Query 010249
Match_columns 514
No_of_seqs 156 out of 229
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 23:07:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uw4_A UPF3X; nonsense mediate 100.0 2.6E-36 9E-41 256.1 11.7 90 8-99 2-91 (91)
2 2l08_A Regulator of nonsense t 100.0 1.5E-35 5.2E-40 254.6 8.6 90 6-97 8-97 (97)
3 1x4c_A Splicing factor, argini 97.9 0.00012 4.2E-09 60.5 11.4 81 4-95 12-92 (108)
4 2e5h_A Zinc finger CCHC-type a 97.8 0.00017 5.9E-09 57.4 10.5 81 4-93 13-93 (94)
5 4fxv_A ELAV-like protein 1; RN 97.8 0.00013 4.5E-09 60.3 9.3 80 5-93 17-96 (99)
6 2dnz_A Probable RNA-binding pr 97.7 0.0003 1E-08 56.1 10.7 85 3-96 1-85 (95)
7 2div_A TRNA selenocysteine ass 97.7 0.00026 8.9E-09 57.0 10.3 92 3-99 5-97 (99)
8 2dgt_A RNA-binding protein 30; 97.7 0.00021 7.1E-09 57.1 9.4 75 3-94 6-80 (92)
9 2dgp_A Bruno-like 4, RNA bindi 97.7 0.00027 9.1E-09 57.6 9.7 87 3-95 9-95 (106)
10 1x5u_A Splicing factor 3B subu 97.6 0.00037 1.3E-08 56.7 10.3 84 3-95 11-94 (105)
11 2cq3_A RNA-binding protein 9; 97.6 0.00091 3.1E-08 54.3 12.3 84 4-98 12-95 (103)
12 2fy1_A RNA-binding motif prote 97.6 0.00087 3E-08 56.6 12.6 87 1-97 1-87 (116)
13 2do4_A Squamous cell carcinoma 97.6 0.00047 1.6E-08 55.7 10.4 81 3-93 13-93 (100)
14 1x5t_A Splicing factor 3B subu 97.6 0.00036 1.2E-08 55.7 9.6 82 4-94 2-84 (96)
15 2dnp_A RNA-binding protein 14; 97.6 0.00035 1.2E-08 55.6 9.3 77 3-96 5-81 (90)
16 2d9p_A Polyadenylate-binding p 97.6 0.00074 2.5E-08 54.8 11.3 83 3-96 11-93 (103)
17 1whw_A Hypothetical protein ri 97.6 0.0005 1.7E-08 55.3 10.0 86 3-97 4-89 (99)
18 2cqi_A Nucleolysin TIAR; RNA r 97.6 0.0006 2E-08 55.4 10.6 83 2-95 10-92 (103)
19 3mdf_A Peptidyl-prolyl CIS-tra 97.6 0.00046 1.6E-08 53.7 9.5 81 4-93 4-84 (85)
20 1x4e_A RNA binding motif, sing 97.6 0.00022 7.4E-09 55.9 7.7 74 3-80 1-74 (85)
21 3bs9_A Nucleolysin TIA-1 isofo 97.6 0.00041 1.4E-08 54.3 9.2 81 4-93 3-83 (87)
22 2dnh_A Bruno-like 5, RNA bindi 97.6 0.00061 2.1E-08 55.3 10.5 86 4-96 12-97 (105)
23 1x4a_A Splicing factor, argini 97.5 0.00068 2.3E-08 55.7 10.7 80 4-95 19-98 (109)
24 1why_A Hypothetical protein ri 97.5 0.00041 1.4E-08 55.9 9.2 78 4-94 14-91 (97)
25 2cqc_A Arginine/serine-rich sp 97.5 0.00037 1.3E-08 55.4 8.8 82 3-93 11-92 (95)
26 2dgu_A Heterogeneous nuclear r 97.5 0.00059 2E-08 55.7 10.3 77 4-97 8-84 (103)
27 1x5o_A RNA binding motif, sing 97.5 0.00069 2.3E-08 56.0 10.7 86 4-94 22-110 (114)
28 1x5s_A Cold-inducible RNA-bind 97.5 0.00044 1.5E-08 55.9 9.2 82 4-94 9-90 (102)
29 2dnq_A RNA-binding protein 4B; 97.5 0.00051 1.8E-08 54.6 9.4 76 3-95 4-79 (90)
30 2dnm_A SRP46 splicing factor; 97.5 0.00085 2.9E-08 54.5 10.8 85 4-97 10-94 (103)
31 2dgo_A Cytotoxic granule-assoc 97.5 0.00083 2.8E-08 55.6 10.9 86 3-97 11-96 (115)
32 2ywk_A Putative RNA-binding pr 97.5 0.00069 2.3E-08 54.0 10.0 81 3-93 12-92 (95)
33 2x1f_A MRNA 3'-END-processing 97.5 0.00065 2.2E-08 54.6 9.9 83 6-97 1-83 (96)
34 3ulh_A THO complex subunit 4; 97.5 0.0008 2.7E-08 54.8 10.6 81 4-94 26-106 (107)
35 2cph_A RNA binding motif prote 97.5 0.00063 2.2E-08 55.3 9.8 84 4-96 12-97 (107)
36 2do0_A HnRNP M, heterogeneous 97.5 0.0012 4.2E-08 54.3 11.2 83 3-95 11-93 (114)
37 3ex7_B RNA-binding protein 8A; 97.5 0.0008 2.7E-08 56.5 10.2 87 4-99 19-105 (126)
38 2cqb_A Peptidyl-prolyl CIS-tra 97.5 0.0011 3.8E-08 53.6 10.7 85 4-97 9-93 (102)
39 1h2v_Z 20 kDa nuclear CAP bind 97.5 0.00081 2.8E-08 58.8 10.6 82 4-94 36-117 (156)
40 2cqd_A RNA-binding region cont 97.4 0.0011 3.8E-08 55.0 10.8 87 4-100 14-100 (116)
41 2cpd_A Apobec-1 stimulating pr 97.4 0.00069 2.3E-08 54.8 9.3 75 5-94 13-87 (99)
42 2cq0_A Eukaryotic translation 97.4 0.00099 3.4E-08 54.1 10.2 85 3-96 11-95 (103)
43 2lkz_A RNA-binding protein 5; 97.4 0.00069 2.4E-08 56.2 9.4 84 4-93 6-92 (95)
44 2dgs_A DAZ-associated protein 97.4 0.0014 4.7E-08 52.9 10.6 83 3-95 6-88 (99)
45 2cpj_A Non-POU domain-containi 97.4 0.00088 3E-08 54.1 9.4 77 4-95 12-88 (99)
46 2la6_A RNA-binding protein FUS 97.4 0.00088 3E-08 54.1 9.3 82 3-93 9-98 (99)
47 1x4h_A RNA-binding protein 28; 97.4 0.00097 3.3E-08 54.6 9.6 83 3-94 11-99 (111)
48 1b7f_A Protein (SXL-lethal pro 97.4 0.00087 3E-08 57.3 9.6 82 5-93 87-168 (168)
49 2dng_A Eukaryotic translation 97.4 0.00088 3E-08 54.5 9.2 82 3-95 11-92 (103)
50 1x4g_A Nucleolysin TIAR; struc 97.4 0.0009 3.1E-08 55.1 9.3 79 4-97 22-100 (109)
51 2jrs_A RNA-binding protein 39; 97.4 0.00059 2E-08 56.9 8.1 82 3-93 22-103 (108)
52 3md1_A Nuclear and cytoplasmic 97.3 0.0013 4.3E-08 51.0 9.4 78 8-94 2-79 (83)
53 2cpz_A CUG triplet repeat RNA- 97.3 0.0011 3.8E-08 54.9 9.7 82 4-94 22-103 (115)
54 2jvo_A Nucleolar protein 3; nu 97.3 0.0011 3.8E-08 55.4 9.6 74 3-93 27-100 (108)
55 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.3 0.001 3.4E-08 56.3 9.4 81 4-93 60-140 (140)
56 2lxi_A RNA-binding protein 10; 97.3 0.0007 2.4E-08 54.9 7.9 80 8-94 2-81 (91)
57 2khc_A Testis-specific RNP-typ 97.3 0.0012 3.9E-08 54.9 9.3 81 4-93 37-117 (118)
58 3lqv_A PRE-mRNA branch site pr 97.3 0.0016 5.6E-08 53.8 10.0 80 3-94 4-83 (115)
59 1p27_B RNA-binding protein 8A; 97.3 0.0012 4.2E-08 53.7 9.1 81 5-94 21-101 (106)
60 2kt5_A RNA and export factor-b 97.3 0.0022 7.6E-08 53.9 11.0 87 4-100 32-118 (124)
61 2dgv_A HnRNP M, heterogeneous 97.3 0.0013 4.5E-08 52.0 9.0 82 3-95 4-85 (92)
62 1wi8_A EIF-4B, eukaryotic tran 97.3 0.0019 6.5E-08 52.6 10.1 81 4-94 12-92 (104)
63 2cpe_A RNA-binding protein EWS 97.3 0.0015 5.1E-08 53.9 9.5 82 4-94 12-101 (113)
64 3nmr_A Cugbp ELAV-like family 97.3 0.0021 7.1E-08 55.1 10.7 85 6-94 2-86 (175)
65 1fxl_A Paraneoplastic encephal 97.3 0.0013 4.6E-08 55.7 9.5 81 6-93 87-167 (167)
66 1wg1_A KIAA1579 protein, homol 97.3 0.0012 4.2E-08 52.5 8.5 78 5-98 3-80 (88)
67 1b7f_A Protein (SXL-lethal pro 97.2 0.002 7E-08 55.0 10.5 84 5-97 1-84 (168)
68 2e44_A Insulin-like growth fac 97.2 0.0012 4.2E-08 52.7 8.5 80 4-95 12-91 (96)
69 1whx_A Hypothetical protein ri 97.2 0.0019 6.4E-08 54.1 9.9 78 6-98 9-86 (111)
70 2kvi_A Nuclear polyadenylated 97.2 0.0016 5.5E-08 52.6 9.1 80 2-98 5-85 (96)
71 2ytc_A PRE-mRNA-splicing facto 97.2 0.0018 6.3E-08 50.4 9.0 75 4-93 9-84 (85)
72 3nmr_A Cugbp ELAV-like family 97.2 0.002 7E-08 55.2 10.1 81 6-93 94-174 (175)
73 3beg_B Splicing factor, argini 97.2 0.0013 4.3E-08 55.4 8.4 77 6-93 15-91 (115)
74 3s8s_A Histone-lysine N-methyl 97.2 0.0018 6.3E-08 54.6 9.3 84 3-95 2-85 (110)
75 2kxn_B Transformer-2 protein h 97.2 0.0013 4.5E-08 56.8 8.6 82 3-93 42-123 (129)
76 1oo0_B CG8781-PA, drosophila Y 97.2 0.0032 1.1E-07 51.6 10.5 81 5-94 24-104 (110)
77 2xnq_A Nuclear polyadenylated 97.2 0.0029 9.8E-08 51.7 10.1 74 3-93 18-92 (97)
78 2dgw_A Probable RNA-binding pr 97.2 0.0022 7.5E-08 50.9 9.1 80 3-94 6-85 (91)
79 4f25_A Polyadenylate-binding p 97.2 0.0011 3.9E-08 55.5 7.8 80 4-94 2-81 (115)
80 1fxl_A Paraneoplastic encephal 97.2 0.0015 5.1E-08 55.4 8.6 81 7-96 2-82 (167)
81 2fc8_A NCL protein; structure 97.1 0.0019 6.4E-08 52.2 8.6 79 4-94 12-90 (102)
82 3ucg_A Polyadenylate-binding p 97.1 0.0026 8.9E-08 49.9 8.7 77 7-93 6-82 (89)
83 2hvz_A Splicing factor, argini 97.1 0.0015 5.2E-08 52.8 7.5 75 8-96 1-75 (101)
84 2fc9_A NCL protein; structure 97.1 0.003 1E-07 51.1 9.2 80 4-96 12-91 (101)
85 2cqp_A RNA-binding protein 12; 97.1 0.0034 1.2E-07 50.3 9.5 81 4-94 12-93 (98)
86 2la4_A Nuclear and cytoplasmic 97.1 0.0028 9.5E-08 51.2 9.0 66 4-79 24-89 (101)
87 1p1t_A Cleavage stimulation fa 97.1 0.0016 5.4E-08 52.7 7.5 81 6-95 7-87 (104)
88 3md3_A Nuclear and cytoplasmic 97.1 0.0054 1.8E-07 51.9 11.1 81 4-93 84-164 (166)
89 2dh8_A DAZ-associated protein 97.1 0.0024 8.1E-08 52.0 8.6 83 2-94 11-93 (105)
90 1wf1_A RNA-binding protein RAL 97.1 0.005 1.7E-07 50.7 10.6 75 5-96 25-100 (110)
91 2dhg_A TRNA selenocysteine ass 97.1 0.0032 1.1E-07 51.0 9.2 82 3-93 5-87 (104)
92 2err_A Ataxin-2-binding protei 97.0 0.0032 1.1E-07 52.3 9.5 79 4-93 26-104 (109)
93 2cpx_A Hypothetical protein FL 97.0 0.0034 1.2E-07 51.7 9.3 83 4-97 22-106 (115)
94 2cqh_A IGF-II mRNA-binding pro 97.0 0.0027 9.2E-08 50.6 8.4 77 3-94 4-81 (93)
95 1nu4_A U1A RNA binding domain; 97.0 0.0016 5.5E-08 52.0 7.0 81 3-95 4-88 (97)
96 2dgx_A KIAA0430 protein; RRM d 97.0 0.0027 9.1E-08 51.4 8.3 79 4-94 6-88 (96)
97 2cpf_A RNA binding motif prote 97.0 0.0025 8.6E-08 51.1 8.1 86 4-96 2-88 (98)
98 2kn4_A Immunoglobulin G-bindin 97.0 0.0053 1.8E-07 53.3 10.5 84 5-97 68-151 (158)
99 1rk8_A CG8781-PA, CG8781-PA pr 97.0 0.0041 1.4E-07 55.1 10.0 82 5-95 70-151 (165)
100 2cq4_A RNA binding motif prote 97.0 0.0057 2E-07 50.5 10.2 77 7-93 25-101 (114)
101 2g4b_A Splicing factor U2AF 65 96.9 0.0049 1.7E-07 52.9 9.8 80 5-93 92-171 (172)
102 1u6f_A Tcubp1, RNA-binding pro 96.9 0.0036 1.2E-07 53.4 8.9 83 4-95 39-121 (139)
103 2lea_A Serine/arginine-rich sp 96.9 0.0028 9.7E-08 55.0 8.3 87 5-100 45-131 (135)
104 2mss_A Protein (musashi1); RNA 96.9 0.0022 7.6E-08 49.0 6.7 67 9-80 1-67 (75)
105 2jvr_A Nucleolar protein 3; RN 96.9 0.0023 8E-08 54.7 7.5 81 2-94 23-103 (111)
106 1wex_A Hypothetical protein (r 96.9 0.0087 3E-07 50.3 10.9 81 5-99 13-94 (104)
107 2e5j_A Methenyltetrahydrofolat 96.9 0.0031 1.1E-07 50.8 7.7 75 5-93 17-91 (97)
108 2f3j_A RNA and export factor b 96.9 0.004 1.4E-07 56.7 9.1 85 4-98 85-169 (177)
109 2ek1_A RNA-binding protein 12; 96.9 0.0039 1.3E-07 49.6 8.0 80 4-93 12-92 (95)
110 4a8x_A RNA-binding protein wit 96.8 0.0022 7.4E-08 50.1 6.4 80 6-93 3-82 (88)
111 2dis_A Unnamed protein product 96.8 0.0073 2.5E-07 49.2 9.8 90 3-99 4-95 (109)
112 2qfj_A FBP-interacting repress 96.8 0.0046 1.6E-07 55.0 9.1 70 7-80 28-97 (216)
113 2cpy_A RNA-binding protein 12; 96.8 0.0035 1.2E-07 52.3 7.8 80 4-94 12-92 (114)
114 2qfj_A FBP-interacting repress 96.8 0.0077 2.6E-07 53.6 10.4 84 6-98 124-207 (216)
115 3s7r_A Heterogeneous nuclear r 96.8 0.0056 1.9E-07 48.0 8.3 71 3-78 7-77 (87)
116 1fjc_A Nucleolin RBD2, protein 96.8 0.002 6.9E-08 51.4 5.8 77 3-93 12-88 (96)
117 2i2y_A Fusion protein consists 96.8 0.0055 1.9E-07 53.1 8.8 77 4-94 70-146 (150)
118 2yh0_A Splicing factor U2AF 65 96.7 0.0086 2.9E-07 52.6 9.7 80 5-93 112-191 (198)
119 2e5g_A U6 snRNA-specific termi 96.7 0.01 3.5E-07 47.5 9.4 75 5-94 6-80 (94)
120 2cq1_A PTB-like protein L; RRM 96.7 0.012 4.2E-07 49.3 10.1 81 4-99 12-94 (101)
121 3pgw_A U1-A; protein-RNA compl 96.6 0.0089 3E-07 56.1 10.1 75 6-93 206-280 (282)
122 2a3j_A U1 small nuclear ribonu 96.6 0.0057 1.9E-07 53.4 8.1 80 5-94 27-108 (127)
123 2cpi_A CCR4-NOT transcription 96.6 0.0065 2.2E-07 50.5 8.0 84 4-94 12-99 (111)
124 2adc_A Polypyrimidine tract-bi 96.6 0.011 3.9E-07 54.5 10.4 81 4-98 31-112 (229)
125 1sjq_A Polypyrimidine tract-bi 96.6 0.01 3.4E-07 50.9 9.2 83 3-100 12-96 (105)
126 1x4b_A Heterogeneous nuclear r 96.6 0.0075 2.6E-07 50.0 8.2 79 6-94 26-104 (116)
127 3p5t_L Cleavage and polyadenyl 96.6 0.0047 1.6E-07 49.2 6.7 72 7-80 1-72 (90)
128 1fje_B Nucleolin RBD12, protei 96.5 0.0085 2.9E-07 51.9 8.6 75 5-93 97-171 (175)
129 3md3_A Nuclear and cytoplasmic 96.5 0.0084 2.9E-07 50.7 8.4 78 9-96 2-79 (166)
130 3r27_A HnRNP L, heterogeneous 96.5 0.018 6.2E-07 49.0 10.2 81 4-98 18-99 (100)
131 3pgw_S U1-70K; protein-RNA com 96.5 0.0092 3.2E-07 61.9 10.1 81 6-95 101-181 (437)
132 2hzc_A Splicing factor U2AF 65 96.5 0.0068 2.3E-07 47.2 7.0 67 5-80 4-79 (87)
133 2j76_E EIF-4B, EIF4B, eukaryot 96.5 0.0058 2E-07 49.7 6.8 71 4-80 16-87 (100)
134 1l3k_A Heterogeneous nuclear r 96.5 0.0087 3E-07 52.5 8.2 81 4-94 10-90 (196)
135 3egn_A RNA-binding protein 40; 96.4 0.019 6.6E-07 49.3 10.2 81 4-95 42-129 (143)
136 2ad9_A Polypyrimidine tract-bi 96.4 0.01 3.4E-07 51.9 8.4 81 4-98 28-109 (119)
137 2cq2_A Hypothetical protein LO 96.4 0.015 5E-07 50.7 9.3 80 5-94 23-104 (114)
138 1qm9_A Polypyrimidine tract-bi 96.4 0.018 6.2E-07 51.1 9.8 77 7-97 3-80 (198)
139 1iqt_A AUF1, heterogeneous nuc 96.4 0.0063 2.1E-07 46.3 5.9 66 9-79 1-66 (75)
140 3q2s_C Cleavage and polyadenyl 96.3 0.0083 2.8E-07 56.7 7.9 82 6-94 67-148 (229)
141 3pgw_A U1-A; protein-RNA compl 96.3 0.017 5.7E-07 54.2 9.9 80 4-93 6-87 (282)
142 3n9u_C Cleavage and polyadenyl 96.3 0.011 3.9E-07 52.8 8.3 81 6-93 54-134 (156)
143 1qm9_A Polypyrimidine tract-bi 96.3 0.012 4.2E-07 52.1 8.4 75 6-93 119-194 (198)
144 2db1_A Heterogeneous nuclear r 96.3 0.012 4.2E-07 49.6 7.9 71 4-78 14-85 (118)
145 1x4d_A Matrin 3; structural ge 96.3 0.0092 3.2E-07 50.5 7.0 77 4-94 12-90 (102)
146 2ki2_A SS-DNA binding protein 96.3 0.0062 2.1E-07 48.0 5.6 79 8-96 2-80 (90)
147 2jwn_A Embryonic polyadenylate 96.3 0.0097 3.3E-07 49.7 7.1 78 7-94 36-113 (124)
148 1fj7_A Nucleolin RBD1, protein 96.3 0.0023 8E-08 51.7 3.1 78 4-94 14-93 (101)
149 1sjr_A Polypyrimidine tract-bi 96.2 0.013 4.5E-07 54.2 8.4 84 3-97 42-125 (164)
150 1uaw_A Mouse-musashi-1; RNP-ty 96.2 0.011 3.9E-07 44.9 6.7 66 8-78 1-66 (77)
151 2cqg_A TDP-43, TAR DNA-binding 96.2 0.018 6.3E-07 46.5 8.3 83 3-96 11-93 (103)
152 2cjk_A Nuclear polyadenylated 96.2 0.012 4E-07 50.3 7.4 63 6-72 2-64 (167)
153 2adc_A Polypyrimidine tract-bi 96.2 0.018 6.2E-07 53.1 9.1 75 6-93 150-225 (229)
154 1s79_A Lupus LA protein; RRM, 96.1 0.023 8E-07 47.3 8.4 72 3-80 7-78 (103)
155 1wg5_A Heterogeneous nuclear r 96.0 0.026 8.8E-07 46.3 8.4 69 4-78 12-81 (104)
156 3smz_A Protein raver-1, ribonu 96.0 0.024 8.2E-07 53.2 9.3 74 6-95 21-94 (284)
157 2dnl_A Cytoplasmic polyadenyla 96.0 0.028 9.7E-07 46.8 8.7 75 4-81 5-83 (114)
158 1wel_A RNA-binding protein 12; 96.0 0.019 6.4E-07 48.5 7.6 79 4-93 22-101 (124)
159 4f02_A Polyadenylate-binding p 96.0 0.022 7.5E-07 52.0 8.6 71 5-79 13-83 (213)
160 2rs2_A Musashi-1, RNA-binding 96.0 0.026 9E-07 46.8 8.3 82 3-94 21-102 (109)
161 2nlw_A Eukaryotic translation 96.0 0.024 8.3E-07 46.5 7.9 77 7-93 15-97 (105)
162 3tyt_A Heterogeneous nuclear r 95.9 0.028 9.7E-07 51.9 9.1 81 6-93 122-204 (205)
163 2krb_A Eukaryotic translation 95.9 0.019 6.6E-07 44.6 6.8 67 8-80 2-74 (81)
164 1l3k_A Heterogeneous nuclear r 95.9 0.024 8.4E-07 49.6 8.1 80 6-95 103-182 (196)
165 3sde_A Paraspeckle component 1 95.9 0.027 9.3E-07 53.0 8.9 76 4-94 19-94 (261)
166 3zzy_A Polypyrimidine tract-bi 95.9 0.069 2.4E-06 47.5 10.9 85 2-98 23-108 (130)
167 3smz_A Protein raver-1, ribonu 95.8 0.058 2E-06 50.6 10.8 80 5-94 182-262 (284)
168 1wez_A HnRNP H', FTP-3, hetero 95.8 0.025 8.7E-07 46.7 7.4 70 3-79 11-80 (102)
169 2dnn_A RNA-binding protein 12; 95.8 0.022 7.6E-07 48.3 7.1 66 6-78 15-80 (109)
170 2lmi_A GRSF-1, G-rich sequence 95.8 0.021 7.1E-07 47.1 6.7 72 3-78 7-79 (107)
171 2m2b_A RNA-binding protein 10; 95.8 0.018 6.3E-07 49.1 6.6 79 5-93 21-105 (131)
172 2hgl_A HNRPF protein, heteroge 95.7 0.025 8.5E-07 49.9 7.3 72 4-79 41-113 (136)
173 2xs2_A Deleted in azoospermia- 95.6 0.026 8.9E-07 45.5 6.6 66 6-78 8-73 (102)
174 2ghp_A U4/U6 snRNA-associated 95.6 0.043 1.5E-06 51.7 9.0 83 5-96 115-197 (292)
175 2cjk_A Nuclear polyadenylated 95.6 0.032 1.1E-06 47.6 7.4 77 7-93 87-163 (167)
176 1x5p_A Negative elongation fac 95.5 0.11 3.8E-06 41.6 10.1 76 3-95 11-86 (97)
177 2ghp_A U4/U6 snRNA-associated 95.5 0.037 1.3E-06 52.1 8.4 82 3-96 37-118 (292)
178 3ns6_A Eukaryotic translation 95.4 0.017 5.7E-07 47.2 4.9 80 6-93 5-90 (100)
179 1fje_B Nucleolin RBD12, protei 95.3 0.013 4.4E-07 50.8 3.9 82 3-96 9-91 (175)
180 3d2w_A TAR DNA-binding protein 95.2 0.11 3.7E-06 41.7 9.2 75 3-93 7-81 (89)
181 1owx_A Lupus LA protein, SS-B, 95.2 0.054 1.8E-06 47.9 7.8 59 5-73 16-76 (121)
182 2e5i_A Heterogeneous nuclear r 95.2 0.11 3.6E-06 45.6 9.5 81 4-97 22-103 (124)
183 2g4b_A Splicing factor U2AF 65 95.1 0.052 1.8E-06 46.5 7.1 76 6-95 3-87 (172)
184 1x4f_A Matrin 3; structural ge 95.0 0.043 1.5E-06 47.4 6.5 77 4-94 22-100 (112)
185 3sde_A Paraspeckle component 1 95.0 0.12 3.9E-06 48.8 10.0 85 5-95 94-178 (261)
186 1wf0_A TDP-43, TAR DNA-binding 94.9 0.16 5.5E-06 39.9 9.1 74 5-94 3-76 (88)
187 4f02_A Polyadenylate-binding p 94.7 0.09 3.1E-06 47.9 8.2 76 7-93 103-178 (213)
188 2lcw_A RNA-binding protein FUS 93.7 0.0054 1.8E-07 51.0 0.0 82 4-94 4-93 (116)
189 2dha_A FLJ20171 protein; RRM d 94.7 0.074 2.5E-06 46.1 7.1 70 5-78 21-92 (123)
190 2yh0_A Splicing factor U2AF 65 94.4 0.069 2.4E-06 46.8 6.4 74 6-93 3-85 (198)
191 2hgm_A HNRPF protein, heteroge 94.4 0.16 5.4E-06 44.4 8.6 69 4-78 39-108 (126)
192 3tht_A Alkylated DNA repair pr 94.1 0.22 7.4E-06 50.8 10.2 80 4-93 15-96 (345)
193 3tyt_A Heterogeneous nuclear r 94.0 0.3 1E-05 45.0 10.2 79 6-98 3-82 (205)
194 2wbr_A GW182, gawky, LD47780P; 93.9 0.14 4.8E-06 43.3 6.8 73 6-93 6-78 (89)
195 2bz2_A Negative elongation fac 93.7 0.34 1.2E-05 41.3 9.2 77 3-96 35-111 (121)
196 2hgn_A Heterogeneous nuclear r 92.6 0.071 2.4E-06 47.3 3.3 69 4-79 43-111 (139)
197 3u1l_A PRE-mRNA-splicing facto 91.4 0.31 1.1E-05 47.3 6.5 80 6-95 133-228 (240)
198 2dit_A HIV TAT specific factor 90.9 2.2 7.5E-05 35.2 10.4 78 3-93 11-99 (112)
199 2diu_A KIAA0430 protein; struc 90.2 0.79 2.7E-05 39.4 7.2 71 10-97 12-85 (96)
200 2voo_A Lupus LA protein; RNA-b 89.4 1.3 4.6E-05 40.4 8.7 62 8-74 110-171 (193)
201 2pe8_A Splicing factor 45; RRM 88.7 5.6 0.00019 33.1 11.3 83 5-95 6-93 (105)
202 3v4m_A Splicing factor U2AF 65 86.6 1.3 4.4E-05 36.9 6.1 86 6-96 4-97 (105)
203 1jmt_A Splicing factor U2AF 35 82.7 0.95 3.3E-05 37.6 3.6 38 52-94 67-104 (104)
204 2dhx_A Poly (ADP-ribose) polym 81.3 5.5 0.00019 34.8 7.9 59 4-72 5-66 (104)
205 2j8a_A Histone-lysine N-methyl 73.1 8.9 0.0003 34.9 7.1 67 8-78 3-83 (136)
206 3ue2_A Poly(U)-binding-splicin 71.1 9.5 0.00032 32.6 6.6 83 6-95 19-108 (118)
207 2xb2_G Regulator of nonsense t 59.6 4.1 0.00014 32.5 1.9 18 383-400 4-21 (60)
208 3s6e_A RNA-binding protein 39; 54.2 53 0.0018 27.8 8.2 81 4-95 4-92 (114)
209 2d9o_A DNAJ (HSP40) homolog, s 47.3 78 0.0027 26.1 8.0 62 17-94 27-88 (100)
210 1wey_A Calcipressin 1; structu 43.8 20 0.00068 31.2 3.8 70 7-86 5-79 (104)
211 2yh9_A Small protein A, BAME p 34.2 70 0.0024 25.9 5.5 52 11-62 9-64 (88)
212 1ufw_A Synaptojanin 2; RNP dom 32.6 58 0.002 27.8 4.9 61 7-78 15-82 (95)
213 2dnr_A Synaptojanin-1; RRM dom 27.5 85 0.0029 26.5 5.0 61 7-78 7-73 (91)
214 4hat_B RAN-specific GTPase-act 23.0 2E+02 0.0068 25.7 6.9 64 5-75 58-132 (140)
215 3gqq_A Protein UNC-119 homolog 22.4 51 0.0017 31.6 3.0 32 17-48 152-183 (195)
216 3m1i_B RAN-specific GTPase-act 20.3 2.4E+02 0.0081 26.7 7.1 64 5-75 109-183 (191)
217 2pxg_A Outer membrane protein; 20.0 1.6E+02 0.0055 25.4 5.5 20 12-31 23-42 (118)
No 1
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=100.00 E-value=2.6e-36 Score=256.06 Aligned_cols=90 Identities=37% Similarity=0.675 Sum_probs=87.2
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCeee
Q 010249 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFK 87 (514)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne~~ 87 (514)
+|||||||||+|||++|+++|++++ .++|+|||+|+++.++++||||||+|++.|+|.+|.+.|+|++|+|++|++++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~--~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~ 79 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMP--EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYP 79 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCC--CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcc--cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEee
Confidence 7999999999999999999999987 58999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeccCCCCC
Q 010249 88 TIVEYAPSQRVP 99 (514)
Q Consensus 88 AiVEfAPYQKvP 99 (514)
|+||||||||||
T Consensus 80 a~VE~AP~qkvP 91 (91)
T 1uw4_A 80 AIVEFAPFQKAA 91 (91)
T ss_dssp CEEEECSSCCC-
T ss_pred eEEEEcCCCcCc
Confidence 999999999997
No 2
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=254.61 Aligned_cols=90 Identities=32% Similarity=0.661 Sum_probs=87.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCe
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQ 85 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne 85 (514)
..+|||||||||+|||++|+++|+++|+ ++|+|||+|+++.++++||||||+|+++|+|.+|.+.|+|++|+|++|++
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~--~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~ 85 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLE 85 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSS--EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCc--cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCE
Confidence 5689999999999999999999999876 69999999999999999999999999999999999999999999999999
Q ss_pred eeeeEEeccCCC
Q 010249 86 FKTIVEYAPSQR 97 (514)
Q Consensus 86 ~~AiVEfAPYQK 97 (514)
++|+||||||||
T Consensus 86 ~~a~VE~APyqK 97 (97)
T 2l08_A 86 YPAVVEFAPFQK 97 (97)
T ss_dssp EEEEEEECCCCC
T ss_pred eeeEEEecCCCC
Confidence 999999999997
No 3
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.89 E-value=0.00012 Score=60.54 Aligned_cols=81 Identities=16% Similarity=0.221 Sum_probs=66.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
+....+|.|.+||+.+||+++.+.+..+- .|.....+.. .-|||.|.+.+++...++.++|+.|.+..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~i~~~---------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~ 80 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAG--DVCYADVYRD---------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 80 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGS--CEEEEEEETT---------TEEEEEESSHHHHHHHHHHSSSEEEECTTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEeEEEEecC---------CEEEEEECCHHHHHHHHHHHCcCCccCCcC
Confidence 34678999999999999999999998753 4554444332 679999999999999999999999988676
Q ss_pred CeeeeeEEeccC
Q 010249 84 VQFKTIVEYAPS 95 (514)
Q Consensus 84 ne~~AiVEfAPY 95 (514)
......|++|--
T Consensus 81 ~~~~i~V~~a~~ 92 (108)
T 1x4c_A 81 ETAYIRVKVDGP 92 (108)
T ss_dssp CEEEEEEEESSC
T ss_pred cceEEEEEeCCC
Confidence 667788998754
No 4
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=0.00017 Score=57.36 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=61.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
+.+..+|.|++||+.+||+++.+.+..+ +.|....++..+.+.+ ...-|||.|.+.+++....+.++|+.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 85 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKY--GKVVKVTIMKDKDTRK--SKGVAFILFLDKDSAQNCTRAINNKQLFG--- 85 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTT--SCEEEEEECCCSSSCC--CTTCEEEEESCHHHHHHHHHHTTTEEETT---
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCCC--cccEEEEEECCHHHHHHHHHHcCCCeeCC---
Confidence 5577899999999999999999999875 3455555544333221 12459999999999999999999988752
Q ss_pred CeeeeeEEec
Q 010249 84 VQFKTIVEYA 93 (514)
Q Consensus 84 ne~~AiVEfA 93 (514)
....|+||
T Consensus 86 --~~l~v~~a 93 (94)
T 2e5h_A 86 --RVIKASIA 93 (94)
T ss_dssp --EEEEEEEC
T ss_pred --cEEEEEec
Confidence 35667765
No 5
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.75 E-value=0.00013 Score=60.30 Aligned_cols=80 Identities=19% Similarity=0.298 Sum_probs=60.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCC
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGV 84 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGn 84 (514)
.++++|.|++||+.+||+++.+.+..+ |.|.....+.-+.+. ..-.-|||.|.+.+++....+.++|..|.+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg--~~kG~afV~f~~~~~A~~Ai~~lng~~~~g---- 88 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSI--GEVESAKLIRDKVAG--HSLGYGFVNYVTAKDAERAINTLNGLRLQS---- 88 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECSSSC--CEEEEEEEEESSHHHHHHHHHHHTTCEETT----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEeEeeecCCCC--cccccEEEEECCHHHHHHHHHHhCCCEECC----
Confidence 367899999999999999999999875 456555554432221 112359999999999999999999998842
Q ss_pred eeeeeEEec
Q 010249 85 QFKTIVEYA 93 (514)
Q Consensus 85 e~~AiVEfA 93 (514)
..-.|+||
T Consensus 89 -r~l~V~~A 96 (99)
T 4fxv_A 89 -KTIKVSYA 96 (99)
T ss_dssp -EECEEEEC
T ss_pred -EEEEEEEe
Confidence 35678877
No 6
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=0.0003 Score=56.09 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=64.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
++.+..+|.|.+||+.+||+++.+.+..+ +.|....++..+.+.+ ...-|||.|.+.+++...++.++|+.|.+
T Consensus 1 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 74 (95)
T 2dnz_A 1 GSSGSSGLYVGSLHFNITEDMLRGIFEPF--GKIDNIVLMKDSDTGR--SKGYGFITFSDSECARRALEQLNGFELAG-- 74 (95)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEECCSSSCC--CCSEEEEEESCHHHHHHHHHHHTTCCSSS--
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEeecCCCCc--eeeEEEEEECCHHHHHHHHHHhCCCeeCC--
Confidence 35678899999999999999999999875 3455545544332221 23579999999999999999999988843
Q ss_pred CCeeeeeEEeccCC
Q 010249 83 GVQFKTIVEYAPSQ 96 (514)
Q Consensus 83 Gne~~AiVEfAPYQ 96 (514)
....|++|.-+
T Consensus 75 ---~~l~V~~a~~~ 85 (95)
T 2dnz_A 75 ---RPMRVGHVTER 85 (95)
T ss_dssp ---SCCEEEESSCC
T ss_pred ---cEEEEEEcccc
Confidence 35678887543
No 7
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.71 E-value=0.00026 Score=56.99 Aligned_cols=92 Identities=9% Similarity=0.075 Sum_probs=66.2
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCccee-EEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYN-WVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNE 81 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvd-wfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDs 81 (514)
...+..+|.|.+||+.+||+++.+.+..+- .|. ....+..+.+. ....-|||.|.+.+++....+.++|+.|.+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~v~i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMG--ETVMSVKIIRNRLTG--IPAGYCFVEFADLATAEKCLHKINGKPLPGA 80 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTT--CCCCEEEEEECSSSC--CEEEEEEEECSCHHHHHHHHHTTTTSEESSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhC--CcceEEEEeecCCCC--CcCCEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 355778999999999999999999998753 333 33333332221 1224599999999999999999999988554
Q ss_pred CCCeeeeeEEeccCCCCC
Q 010249 82 KGVQFKTIVEYAPSQRVP 99 (514)
Q Consensus 82 KGne~~AiVEfAPYQKvP 99 (514)
.. .-.-.|+||-.++.+
T Consensus 81 ~~-~~~l~v~~a~~~~~~ 97 (99)
T 2div_A 81 TP-AKRFKLNYATYSGPS 97 (99)
T ss_dssp SS-CEECCEEETTCCSSS
T ss_pred Cc-ceeEEEeecCCCCCC
Confidence 32 123678988776654
No 8
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.69 E-value=0.00021 Score=57.15 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=61.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
.+.+..+|.|++||+.+||+++.+.+..+ +.|....++.| -|||.|.+.+++....+.++|+.|.+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~v~~~~~----------~afV~f~~~~~a~~A~~~l~g~~~~g-- 71 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEY--GPVIECDIVKD----------YAFVHMERAEDAVEAIRGLDNTEFQG-- 71 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTT--SCCCEEEECSS----------EEEEEESCHHHHHHHHHHHTTEEETT--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEECC----------EEEEEECCHHHHHHHHHHhCCCeeCC--
Confidence 35677899999999999999999999875 34555555544 79999999999999999999999842
Q ss_pred CCeeeeeEEecc
Q 010249 83 GVQFKTIVEYAP 94 (514)
Q Consensus 83 Gne~~AiVEfAP 94 (514)
....|++|-
T Consensus 72 ---~~l~V~~a~ 80 (92)
T 2dgt_A 72 ---KRMHVQLST 80 (92)
T ss_dssp ---EEEEEEESS
T ss_pred ---cEEEEEEcc
Confidence 467888874
No 9
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.66 E-value=0.00027 Score=57.60 Aligned_cols=87 Identities=13% Similarity=0.154 Sum_probs=64.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
.+.+..+|.|.+||+.+||+++.+.+..+ +.|.....+..+.+.+ .-.-|||.|.+.+++...++.+++..|.+..
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEF--GKIYELTVLKDRFTGM--HKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHH--SCCCEEECCCCSSSCS--CCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEecCCCCC--cceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 35677899999999999999999999875 3455544433322221 1246999999999999999999999876544
Q ss_pred CCeeeeeEEeccC
Q 010249 83 GVQFKTIVEYAPS 95 (514)
Q Consensus 83 Gne~~AiVEfAPY 95 (514)
|. ...|+||--
T Consensus 85 g~--~l~v~~a~~ 95 (106)
T 2dgp_A 85 NR--PIQVKPADS 95 (106)
T ss_dssp SS--CCEEEECCC
T ss_pred Cc--eEEEEECCc
Confidence 43 567787743
No 10
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.64 E-value=0.00037 Score=56.65 Aligned_cols=84 Identities=15% Similarity=0.125 Sum_probs=63.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
.+.+..+|.|.+||+.+||+++.+.+..+ +.|.....+..+... ....-|||.|.+.+++...++.++++.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 84 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQA--GPVVNTHMPKDRVTG--QHQGYGFVEFLSEEDADYAIKIMDMIKLYG-- 84 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCBCSSSC--SBCSCEEEEESSHHHHHHHHHHSSSCBCSS--
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCC--cCCcEEEEEECCHHHHHHHHHHhCCCeECC--
Confidence 45678999999999999999999999875 345554444332221 122469999999999999999999988743
Q ss_pred CCeeeeeEEeccC
Q 010249 83 GVQFKTIVEYAPS 95 (514)
Q Consensus 83 Gne~~AiVEfAPY 95 (514)
....|++|--
T Consensus 85 ---~~l~v~~a~~ 94 (105)
T 1x5u_A 85 ---KPIRVNKASA 94 (105)
T ss_dssp ---CBCEEEETTT
T ss_pred ---eEEEEEECCC
Confidence 3677887744
No 11
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.62 E-value=0.00091 Score=54.29 Aligned_cols=84 Identities=18% Similarity=0.199 Sum_probs=64.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
+.+..+|.|++||+.+||+++.+.+..+ +.|.....+.... ..-.-|||.|.+.+++...++.++|+.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 82 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQF--GKILDVEIIFNER----GSKGFGFVTFENSADADRAREKLHGTVVEG--- 82 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGT--SCEEEEEEECCTT----TTCCEEEEEESCHHHHHHHHHHHTTCEETT---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCC----CCcEEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 5577899999999999999999999875 3455544443321 123579999999999999999999999843
Q ss_pred CeeeeeEEeccCCCC
Q 010249 84 VQFKTIVEYAPSQRV 98 (514)
Q Consensus 84 ne~~AiVEfAPYQKv 98 (514)
....|++|--...
T Consensus 83 --~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 83 --RKIEVNNATARVM 95 (103)
T ss_dssp --EECEEEECCSSCC
T ss_pred --EEEEEEEcccCCC
Confidence 4678888765443
No 12
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.62 E-value=0.00087 Score=56.57 Aligned_cols=87 Identities=18% Similarity=0.206 Sum_probs=67.3
Q ss_pred CCCCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEe
Q 010249 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVN 80 (514)
Q Consensus 1 mk~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvD 80 (514)
|-++.+..+|.|.+||+.+||+++.+.+..+ +.|....++... .. ..-.-|||.|.+.+++...++.++|..|.+
T Consensus 1 m~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~g--~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g 75 (116)
T 2fy1_A 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKH--GPISEVLLIKDR-TS--KSRGFAFITFENPADAKNAAKDMNGKSLHG 75 (116)
T ss_dssp CCTTCSCCEEEEECCTTTCCHHHHHHHHHTS--SCCSEEEEECST-TT--TCCCEEEEECSSHHHHHHHHHHCSSCBCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECC-CC--CcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 6777888999999999999999999999875 345555555444 21 223579999999999999999999999843
Q ss_pred CCCCeeeeeEEeccCCC
Q 010249 81 EKGVQFKTIVEYAPSQR 97 (514)
Q Consensus 81 sKGne~~AiVEfAPYQK 97 (514)
....|++|--..
T Consensus 76 -----~~l~V~~a~~~~ 87 (116)
T 2fy1_A 76 -----KAIKVEQAKKPS 87 (116)
T ss_dssp -----SBCEEEECCCSS
T ss_pred -----EEEEEEECCCCC
Confidence 257788885443
No 13
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=0.00047 Score=55.70 Aligned_cols=81 Identities=14% Similarity=0.221 Sum_probs=61.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
.+.+..+|.|++||+.+||+++.+.+..+ +.|.....+... . .....-|||.|.+.+++...++.++|+.|.+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~--g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 85 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAH--GTVKDLRLVTNR-A--GKPKGLAYVEYENESQASQAVMKMDGMTIKE-- 85 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECT-T--SCEEEEEEEEESSHHHHHHHHHHHTTEESSS--
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEEECC-C--CCEEeEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 35567899999999999999999999875 345554554433 1 1223569999999999999999999988743
Q ss_pred CCeeeeeEEec
Q 010249 83 GVQFKTIVEYA 93 (514)
Q Consensus 83 Gne~~AiVEfA 93 (514)
....|++|
T Consensus 86 ---~~l~v~~a 93 (100)
T 2do4_A 86 ---NIIKVAIS 93 (100)
T ss_dssp ---CEEEEEEC
T ss_pred ---EEEEEEEC
Confidence 25677776
No 14
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.60 E-value=0.00036 Score=55.68 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=60.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEE-EeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWV-SFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwf-yFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
+.+..+|.|++||+.+||+++.+.+..+- .|... ..+..+... ....-|||.|.+.+++...++.++|+.|.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~~i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~--- 74 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFG--VILQTPKIMRDPDTG--NSKGYAFINFASFDASDAAIEAMNGQYLC--- 74 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTS--CBSSCCEECCCTTTC--SCCSEEEEEBSSHHHHHHHHHTTTTCEET---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEEEcCCCC--CcCeEEEEEECCHHHHHHHHHHcCCCEEC---
Confidence 45788999999999999999999998753 33322 222221111 12356999999999999999999999983
Q ss_pred CCeeeeeEEecc
Q 010249 83 GVQFKTIVEYAP 94 (514)
Q Consensus 83 Gne~~AiVEfAP 94 (514)
| ....|+||-
T Consensus 75 g--~~l~v~~a~ 84 (96)
T 1x5t_A 75 N--RPITVSYAF 84 (96)
T ss_dssp T--EECEEEESC
T ss_pred C--EEEEEEEec
Confidence 2 367788874
No 15
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.59 E-value=0.00035 Score=55.55 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=62.3
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
.+.+..+|.|.+||+.+|++++.+.+..+ +.|.....+.| .|||.|.+.+++...++.++|+.|.+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~~~~~~~----------~afV~f~~~~~a~~A~~~l~g~~~~g-- 70 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERR--GRVIECDVVKD----------YAFVHMEKEADAKAAIAQLNGKEVKG-- 70 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHH--SCEEEEEECSS----------CEEEEESCHHHHHHHHHHHTTCEETT--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcC--CCEEEEEEECC----------EEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 35677899999999999999999999875 34655555544 79999999999999999999998842
Q ss_pred CCeeeeeEEeccCC
Q 010249 83 GVQFKTIVEYAPSQ 96 (514)
Q Consensus 83 Gne~~AiVEfAPYQ 96 (514)
....|++|--+
T Consensus 71 ---~~l~v~~a~~~ 81 (90)
T 2dnp_A 71 ---KRINVELSTKG 81 (90)
T ss_dssp ---EECEEEESCCC
T ss_pred ---cEEEEEECCCC
Confidence 36778887543
No 16
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.58 E-value=0.00074 Score=54.84 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=62.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
.+.+..+|.|++||+.+||+++.+.+..+ +.|....++.. ......-|||.|.+.+++...++.++|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~----~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--- 81 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPF--GTITSAKVMME----GGRSKGFGFVCFSSPEEATKAVTEMNGRIVA--- 81 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTT--SCEEEEEEEEC----SSSEEEEEEEEESSHHHHHHHHHHHTTCBSS---
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEcC----CCCcCEEEEEEECCHHHHHHHHHHhCCCEeC---
Confidence 35678999999999999999999999875 34554444432 1123357999999999999999999999983
Q ss_pred CCeeeeeEEeccCC
Q 010249 83 GVQFKTIVEYAPSQ 96 (514)
Q Consensus 83 Gne~~AiVEfAPYQ 96 (514)
| ....|+||--+
T Consensus 82 g--~~l~V~~a~~~ 93 (103)
T 2d9p_A 82 T--KPLYVALAQRK 93 (103)
T ss_dssp S--SBCEEEECSSC
T ss_pred C--cEEEEEEeccc
Confidence 2 36778887543
No 17
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.57 E-value=0.0005 Score=55.32 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=63.8
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
...+..+|.|++||+.+||+++.+.+..+ +.|....++...... ....-|||.|.+.+++...++.++|+.|.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 77 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAY--GPLSELHYPIDSLTK--KPKGFAFVTFMFPEHAVKAYAEVDGQVFQG-- 77 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCCCTTTC--CCCSEEEEEESSHHHHHHHHHHTTTEESSS--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEEecCCCC--CcCeEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 35677899999999999999999999875 345544443322221 123569999999999999999999988753
Q ss_pred CCeeeeeEEeccCCC
Q 010249 83 GVQFKTIVEYAPSQR 97 (514)
Q Consensus 83 Gne~~AiVEfAPYQK 97 (514)
....|++|--++
T Consensus 78 ---~~l~V~~a~~~~ 89 (99)
T 1whw_A 78 ---RMLHVLPSTIKK 89 (99)
T ss_dssp ---CEEEEEECCCCS
T ss_pred ---cEEEEEEcCCCc
Confidence 357788875543
No 18
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.57 E-value=0.0006 Score=55.37 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=63.2
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeC
Q 010249 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNE 81 (514)
Q Consensus 2 k~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDs 81 (514)
....+..+|.|.+||+.+||+++.+.+..+- .|.....+.-... .-.-|||.|.+.+++...++.++++.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~-- 81 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIG--PCKSCKMITEHTS----NDPYCFVEFYEHRDAAAALAAMNGRKIL-- 81 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHS--CEEEEEEECCCCS----SCCEEEEEESSHHHHHHHHHHHTTEEET--
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcC--CEeEEEEEecCCC----CCCEEEEEECCHHHHHHHHHHhCCCCcC--
Confidence 3566789999999999999999999998763 3544444432211 1357999999999999999999999874
Q ss_pred CCCeeeeeEEeccC
Q 010249 82 KGVQFKTIVEYAPS 95 (514)
Q Consensus 82 KGne~~AiVEfAPY 95 (514)
| ....|+||--
T Consensus 82 -g--~~l~V~~a~~ 92 (103)
T 2cqi_A 82 -G--KEVKVNWATT 92 (103)
T ss_dssp -T--EEEEEEECCC
T ss_pred -C--CeEEEEECCC
Confidence 2 3678888754
No 19
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.57 E-value=0.00046 Score=53.74 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=59.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
+.+..+|.|++||+.+||+++.+.+..+ +.|....++...... ....-|||.|.+.+++....+.++|+.|. |
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g 76 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETE--KHRGFAFVEFELAEDAAAAIDNMNESELF---G 76 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGG--SCEEEEECCEETTTT--EECSEEEEEESSHHHHHHHHHHHTTCEET---T
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhcc--CCEEEEEEEECCCCC--ccccEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 4577899999999999999999999875 345444433221111 12346999999999999999999999883 2
Q ss_pred CeeeeeEEec
Q 010249 84 VQFKTIVEYA 93 (514)
Q Consensus 84 ne~~AiVEfA 93 (514)
....|+||
T Consensus 77 --~~l~v~~a 84 (85)
T 3mdf_A 77 --RTIRVNLA 84 (85)
T ss_dssp --EECEEEEC
T ss_pred --cEEEEEEc
Confidence 35566665
No 20
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.57 E-value=0.00022 Score=55.92 Aligned_cols=74 Identities=16% Similarity=0.229 Sum_probs=56.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEe
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVN 80 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvD 80 (514)
++.+..+|.|.+||+.+||+++.+.+..+ +.|.....+..+.+.. .-.-|||.|.+.+++....+.++|+.|..
T Consensus 1 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (85)
T 1x4e_A 1 GSSGSSGLYIRGLQPGTTDQDLVKLCQPY--GKIVSTKAILDKTTNK--CKGYGFVDFDSPSAAQKAVTALKASGVQA 74 (85)
T ss_dssp CCCCCCEEEEESCCTTCCHHHHHTTSTTT--SCEEEEEEECCSSSCS--CCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCC--cCcEEEEEECCHHHHHHHHHHhcCCeEee
Confidence 35678899999999999999999988865 3455544444333222 12459999999999999999999987754
No 21
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.56 E-value=0.00041 Score=54.25 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=59.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
..+..+|.|++||+.+|++++.+.+..+ +.|.....+...... ....-|||.|.+.+++....+.++|+.|.+
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 75 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPF--GRISDARVVKDMATG--KSKGYGFVSFFNKWDAENAIQQMGGQWLGG--- 75 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEEecCCCC--ccceEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 3467899999999999999999999875 345554554433221 123569999999999999999999988742
Q ss_pred CeeeeeEEec
Q 010249 84 VQFKTIVEYA 93 (514)
Q Consensus 84 ne~~AiVEfA 93 (514)
....|++|
T Consensus 76 --~~l~v~~a 83 (87)
T 3bs9_A 76 --RQIRTNWA 83 (87)
T ss_dssp --EECEEEEE
T ss_pred --eEEEEEec
Confidence 35667766
No 22
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.56 E-value=0.00061 Score=55.35 Aligned_cols=86 Identities=13% Similarity=0.130 Sum_probs=64.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
..+..+|.|.+||+.+||+++.+.+..+ +.|....++... . ...-.-|||.|.+.+++...++.++|+.|.+..
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~--g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~- 85 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPF--GVIDECTVLRGP-D--GSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGA- 85 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECS-S--SCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECC-C--CCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCC-
Confidence 3467899999999999999999999875 345555554443 1 122356999999999999999999999887632
Q ss_pred CeeeeeEEeccCC
Q 010249 84 VQFKTIVEYAPSQ 96 (514)
Q Consensus 84 ne~~AiVEfAPYQ 96 (514)
.....|+||--.
T Consensus 86 -~~~l~V~~a~~~ 97 (105)
T 2dnh_A 86 -SSSLVVKFADTD 97 (105)
T ss_dssp -SSCCEEEESCSS
T ss_pred -CccEEEEECccC
Confidence 235678877543
No 23
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.55 E-value=0.00068 Score=55.73 Aligned_cols=80 Identities=20% Similarity=0.341 Sum_probs=61.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
+.+..+|.|.+||+.+||+++.+.+..+ +.|....+.... ....-|||.|.+.+++...++.++++.|. |
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g 88 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKY--GAIRDIDLKNRR-----GGPPFAFVEFEDPRDAEDAVYGRDGYDYD---G 88 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEECCSS-----SSSCCEEEEESCHHHHHHHHHHHTTCEET---T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECC-----CCCcEEEEEECCHHHHHHHHHHcCCCEEC---C
Confidence 4567899999999999999999999885 345544442211 12357999999999999999999999873 2
Q ss_pred CeeeeeEEeccC
Q 010249 84 VQFKTIVEYAPS 95 (514)
Q Consensus 84 ne~~AiVEfAPY 95 (514)
....|+||--
T Consensus 89 --~~l~V~~a~~ 98 (109)
T 1x4a_A 89 --YRLRVEFPRS 98 (109)
T ss_dssp --EECEEECCCC
T ss_pred --eEEEEEEccc
Confidence 3678888744
No 24
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.55 E-value=0.00041 Score=55.90 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=60.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
+.+..+|.|.+||+.+||+++.+.+..+ +.|....+..+ ..-|||.|.+.+++...++.++++.|.. .|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~~-~g 82 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRF--GSIRTIDHVKG--------DSFAYIQYESLDAAQAACAKMRGFPLGG-PD 82 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTT--SCEEEEEECSS--------SCCEEEEESSHHHHHHHHHHHTTCBCSS-SS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEeCC--------CCEEEEEECCHHHHHHHHHHHCCCEeCC-CC
Confidence 4466899999999999999999999875 34555555544 2479999999999999999999998742 12
Q ss_pred CeeeeeEEecc
Q 010249 84 VQFKTIVEYAP 94 (514)
Q Consensus 84 ne~~AiVEfAP 94 (514)
....|+||-
T Consensus 83 --~~l~V~~a~ 91 (97)
T 1why_A 83 --RRLRVDFAK 91 (97)
T ss_dssp --CBCEEEECC
T ss_pred --cEEEEEECC
Confidence 356777763
No 25
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.54 E-value=0.00037 Score=55.41 Aligned_cols=82 Identities=23% Similarity=0.155 Sum_probs=60.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
.+.+..+|.|.+||+.+|++++.+.+..+ +.|....++....+. ....-|||.|.+.+++...++.++|+.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~--- 83 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKY--GPIADVSIVYDQQSR--RSRGFAFVYFENVDDAKEAKERANGMELD--- 83 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTT--SCEEEEEEEECSSSS--SEEEEEEEEESSHHHHHHHHHHHTTEEET---
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCeeEEEEEEcCCCC--CcccEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 35677899999999999999999999875 345544444332211 12356999999999999999999998873
Q ss_pred CCeeeeeEEec
Q 010249 83 GVQFKTIVEYA 93 (514)
Q Consensus 83 Gne~~AiVEfA 93 (514)
| ....|+||
T Consensus 84 g--~~l~v~~a 92 (95)
T 2cqc_A 84 G--RRIRVSGP 92 (95)
T ss_dssp T--EEEEEECC
T ss_pred C--EEEEEEec
Confidence 2 35567665
No 26
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.54 E-value=0.00059 Score=55.68 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=61.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
..+..+|.|++||+.+||+++.+.+..+ +.|.......| -|||.|.+.+++...++.++++.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~~~~~----------~afV~f~~~~~a~~A~~~l~g~~~~g--- 72 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQF--GKLERVKKLKD----------YAFIHFDERDGAVKAMEEMNGKDLEG--- 72 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHH--SCEEEEEECSS----------CEEEEESSHHHHHHHHHHHTTEEETT---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEECC----------EEEEEeCCHHHHHHHHHHHCCCccCC---
Confidence 3456899999999999999999999875 34555555443 69999999999999999999998752
Q ss_pred CeeeeeEEeccCCC
Q 010249 84 VQFKTIVEYAPSQR 97 (514)
Q Consensus 84 ne~~AiVEfAPYQK 97 (514)
....|+||--..
T Consensus 73 --~~l~v~~a~~~~ 84 (103)
T 2dgu_A 73 --ENIEIVFAKPPD 84 (103)
T ss_dssp --EEEEEEECCCCC
T ss_pred --CEEEEEEcCCCc
Confidence 367888885443
No 27
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.54 E-value=0.00069 Score=55.99 Aligned_cols=86 Identities=15% Similarity=0.233 Sum_probs=64.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
..+..+|.|.+||+.+||+++.+.+..+ +.|.....+... . .....-|||.|.+.+++...++.++|+.|.....
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~-~--g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~ 96 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPF--GQVISTRILRDS-S--GTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPG 96 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTT--SCEEEEEEEECS-S--SCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECC-C--CCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcc
Confidence 3567899999999999999999998875 345554444433 1 1223569999999999999999999999876653
Q ss_pred ---CeeeeeEEecc
Q 010249 84 ---VQFKTIVEYAP 94 (514)
Q Consensus 84 ---ne~~AiVEfAP 94 (514)
...+..|.||-
T Consensus 97 ~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 97 VSAPTEPLLCKFSG 110 (114)
T ss_dssp SCCCSSCBEEEECC
T ss_pred ccCCCCceeEEccC
Confidence 22356777774
No 28
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.53 E-value=0.00044 Score=55.94 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=61.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
+.+..+|.|++||+.+||+++.+.+..+- .|....++.-.... ....-|||.|.+.+++...++.++++.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G--~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 81 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQ--RSRGFGFVTFENIDDAKDAMMAMNGKSVDG--- 81 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHS--CCCEEEECCCSSSC--SCCSEEEEECSSHHHHHHHHHHHTTCCTTS---
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcC--CeEEEEEEeCCCCC--CcccEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 45678999999999999999999998763 35444443322211 123479999999999999999999998743
Q ss_pred CeeeeeEEecc
Q 010249 84 VQFKTIVEYAP 94 (514)
Q Consensus 84 ne~~AiVEfAP 94 (514)
....|+||-
T Consensus 82 --~~l~v~~a~ 90 (102)
T 1x5s_A 82 --RQIRVDQAG 90 (102)
T ss_dssp --CCCEEEEEE
T ss_pred --eEEEEEECC
Confidence 356777774
No 29
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.53 E-value=0.00051 Score=54.62 Aligned_cols=76 Identities=12% Similarity=0.148 Sum_probs=61.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
++.+..+|.|++||+.+||+++.+.+..+ +.|.....+. .-|||.|.+.+++....+.++++.|.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~~~~----------g~afV~f~~~~~A~~A~~~l~g~~~~g-- 69 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQY--GKVLECDIIK----------NYGFVHIEDKTAAEDAIRNLHHYKLHG-- 69 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTS--SCEEEEEEET----------TEEEEEESSHHHHHHHHHHHTTCBCSS--
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEC----------CEEEEEECCHHHHHHHHHHhcCCccCC--
Confidence 45678999999999999999999999875 3455555552 369999999999999999999988743
Q ss_pred CCeeeeeEEeccC
Q 010249 83 GVQFKTIVEYAPS 95 (514)
Q Consensus 83 Gne~~AiVEfAPY 95 (514)
....|++|--
T Consensus 70 ---~~l~v~~a~~ 79 (90)
T 2dnq_A 70 ---VNINVEASKN 79 (90)
T ss_dssp ---CBCEEECSSC
T ss_pred ---cEEEEEECCC
Confidence 2567887744
No 30
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.52 E-value=0.00085 Score=54.48 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=64.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
..+..+|.|.+||+.+||+++.+.+..+ +.|....++..+.+. ..-.-|||.|.+.+++...++.++|+.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 82 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKY--GRVGDVYIPREPHTK--APRGFAFVRFHDRRDAQDAEAAMDGAELDG--- 82 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEECCBCSSSC--SBCSCEEEEESSSSHHHHHHHHHSSCCBTT---
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCC--CCCeEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 4567899999999999999999999875 346555544333221 123569999999999999999999998743
Q ss_pred CeeeeeEEeccCCC
Q 010249 84 VQFKTIVEYAPSQR 97 (514)
Q Consensus 84 ne~~AiVEfAPYQK 97 (514)
....|++|-..+
T Consensus 83 --~~l~V~~a~~~~ 94 (103)
T 2dnm_A 83 --RELRVQVARYGR 94 (103)
T ss_dssp --BCCEEEECSSCC
T ss_pred --cEEEEEECCcCC
Confidence 357888886544
No 31
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.52 E-value=0.00083 Score=55.58 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=65.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
.+.+..+|.|++||+.+||+++.+.+..+ +.|....++..+... ....-|||.|.+.+++...++.++|+.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 84 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMATG--KSKGYGFVSFFNKWDAENAIQQMGGQWLGG-- 84 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTC--CEEEEEEEEESSHHHHHHHHHHTTTCEETT--
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCC--CcceEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 46688999999999999999999999875 345544444332211 223579999999999999999999988743
Q ss_pred CCeeeeeEEeccCCC
Q 010249 83 GVQFKTIVEYAPSQR 97 (514)
Q Consensus 83 Gne~~AiVEfAPYQK 97 (514)
....|+||--..
T Consensus 85 ---~~l~V~~a~~~~ 96 (115)
T 2dgo_A 85 ---RQIRTNWATRKP 96 (115)
T ss_dssp ---EECEEEESSCCC
T ss_pred ---EEEEEEEccCCC
Confidence 367888886543
No 32
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.51 E-value=0.00069 Score=53.96 Aligned_cols=81 Identities=20% Similarity=0.184 Sum_probs=61.2
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
.+.+..+|.|.+||+.+||+++.+.+..+ +.|.......... .....-|||.|.+.+++...++.++|+.|.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~--G~i~~v~i~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 84 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQA--GPLTKVTICKDRE---GKPKSFGFVCFKHPESVSYAIALLNGIRLYG-- 84 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECTT---SCEEEEEEEEESSTHHHHHHHHHHTTCEETT--
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEEECCC---CCCceEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 34567899999999999999999999876 3455544443321 2234579999999999999999999998742
Q ss_pred CCeeeeeEEec
Q 010249 83 GVQFKTIVEYA 93 (514)
Q Consensus 83 Gne~~AiVEfA 93 (514)
....|+||
T Consensus 85 ---~~l~V~~a 92 (95)
T 2ywk_A 85 ---RPINVSGP 92 (95)
T ss_dssp ---EECEEECC
T ss_pred ---CEEEEEEc
Confidence 35566665
No 33
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.51 E-value=0.00065 Score=54.63 Aligned_cols=83 Identities=13% Similarity=0.136 Sum_probs=62.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCe
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQ 85 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne 85 (514)
+..+|.|++||+.+||+++.+.+..+ |.|.....+..+.+. ....-|||.|.+.+++....+.++|+.|.+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----- 71 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNV--GPVINLKMMFDPQTG--RSKGYAFIEFRDLESSASAVRNLNGYQLGS----- 71 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCTTTC--CBCSEEEEEESSHHHHHHHHHHHTTCEETT-----
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCC--ccceEEEEEECCHHHHHHHHHHhCCCeECC-----
Confidence 35789999999999999999999875 345554444332221 223579999999999999999999998843
Q ss_pred eeeeEEeccCCC
Q 010249 86 FKTIVEYAPSQR 97 (514)
Q Consensus 86 ~~AiVEfAPYQK 97 (514)
....|+||--..
T Consensus 72 ~~l~V~~a~~~~ 83 (96)
T 2x1f_A 72 RFLKCGYSSNSD 83 (96)
T ss_dssp EECEEEECSCSS
T ss_pred eEEEEEEcCCCC
Confidence 467888875443
No 34
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.51 E-value=0.0008 Score=54.83 Aligned_cols=81 Identities=17% Similarity=0.207 Sum_probs=61.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
..+..+|.|++||+.+||+++.+.+..+ +.|....++... . .....-|||.|.+.+++...++.++|+.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~--g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 97 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEF--GTLKKAAVHYDR-S--GRSLGTADVHFERKADALKAMKQYNGVPLDG--- 97 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECT-T--SCEEEEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECC-C--CCcceEEEEEECCHHHHHHHHHHhCCCEeCC---
Confidence 4567899999999999999999999875 345544444333 1 1224579999999999999999999998832
Q ss_pred CeeeeeEEecc
Q 010249 84 VQFKTIVEYAP 94 (514)
Q Consensus 84 ne~~AiVEfAP 94 (514)
....|+||.
T Consensus 98 --~~l~V~~a~ 106 (107)
T 3ulh_A 98 --RPMNIQLVT 106 (107)
T ss_dssp --EECEEEEEC
T ss_pred --cEEEEEEeC
Confidence 356677764
No 35
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.50 E-value=0.00063 Score=55.30 Aligned_cols=84 Identities=18% Similarity=0.279 Sum_probs=62.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecC-CCCCCCCcceEEEEEcCChhhHHHHHHHh-CCCeeEeC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQG-KTSQKHQSCARAYLDFKKPEDVLEFAEFF-NGHVFVNE 81 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpG-k~S~Kp~~ySRAYI~Fkn~Edl~~F~~~f-dG~vFvDs 81 (514)
..+..+|.|.+||+.+||+++.+.+..+ +.|....++.. +... ....-|||.|.+.+++...++.+ +++.|.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTF--GELKTVRLPKKMTGTG--AHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCCCCSSSC--SSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHcc--CCeEEEEEecCCCCCC--CcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 4567899999999999999999999875 34555444433 2221 12356999999999999999999 89887632
Q ss_pred CCCeeeeeEEeccCC
Q 010249 82 KGVQFKTIVEYAPSQ 96 (514)
Q Consensus 82 KGne~~AiVEfAPYQ 96 (514)
...|+||--+
T Consensus 88 -----~l~v~~a~~~ 97 (107)
T 2cph_A 88 -----RLVLEWADSE 97 (107)
T ss_dssp -----BCEEEECCCC
T ss_pred -----EEEEEeCCCC
Confidence 6778887543
No 36
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=0.0012 Score=54.32 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=62.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
+..+..+|.|++||+.+||+++.+.+..+ +.|.....+..+. .....-|||.|.+.+++...++.++++.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--- 82 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMA--GVVVRADILEDKD---GKSRGIGTVTFEQSIEAVQAISMFNGQLLF--- 82 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECTT---CSEEEEEEEEESSHHHHHHHHHHHTTCEET---
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCC---CCeeeEEEEEECCHHHHHHHHHHhCCCEeC---
Confidence 34567899999999999999999999875 3455544443331 122357999999999999999999999884
Q ss_pred CCeeeeeEEeccC
Q 010249 83 GVQFKTIVEYAPS 95 (514)
Q Consensus 83 Gne~~AiVEfAPY 95 (514)
| ....|++|-.
T Consensus 83 g--~~l~v~~a~~ 93 (114)
T 2do0_A 83 D--RPMHVKMDER 93 (114)
T ss_dssp T--EECEEEECSC
T ss_pred C--CEEEEEEccc
Confidence 2 3577888754
No 37
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.46 E-value=0.0008 Score=56.53 Aligned_cols=87 Identities=9% Similarity=0.150 Sum_probs=64.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
..+..+|.|.+||+.+||+++.+.+..+ +.|....++..+...+ .-.-|||.|.+.+++...++.++|+.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 91 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEY--GEIKNIHLNLDRRTGY--LKGYTLVEYETYKEAQAAMEGLNGQDLMG--- 91 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCTTTSS--BCSCEEEEESSHHHHHHHHHHHTTCBSSS---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCc--cceEEEEEECCHHHHHHHHHHhCCCeeCC---
Confidence 3456799999999999999999999875 3455545543332221 13469999999999999999999999832
Q ss_pred CeeeeeEEeccCCCCC
Q 010249 84 VQFKTIVEYAPSQRVP 99 (514)
Q Consensus 84 ne~~AiVEfAPYQKvP 99 (514)
....|+||--+.-+
T Consensus 92 --~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 92 --QPISVDWCFVRGPP 105 (126)
T ss_dssp --SBCEEEESEESSSC
T ss_pred --eEEEEEEecCCCCC
Confidence 35778888654443
No 38
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.46 E-value=0.0011 Score=53.57 Aligned_cols=85 Identities=14% Similarity=0.171 Sum_probs=62.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
+.+..+|.|++||+.+||+++.+.+..+ +.|....++.-+.+. ....-|||.|.+.+++...++.++|+.|. |
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g 81 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETE--KHRGFAFVEFELAEDAAAAIDNMNESELF---G 81 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTT--SCCCCEECCCCSSSC--CCSSEEEECCSSHHHHHHHHHHHTTEEET---T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcc--CCEEEEEEEecCCCC--CcceEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 4567899999999999999999999875 334444443322221 12356999999999999999999998874 2
Q ss_pred CeeeeeEEeccCCC
Q 010249 84 VQFKTIVEYAPSQR 97 (514)
Q Consensus 84 ne~~AiVEfAPYQK 97 (514)
....|+||--++
T Consensus 82 --~~l~V~~a~~~~ 93 (102)
T 2cqb_A 82 --RTIRVNLAKPMR 93 (102)
T ss_dssp --EEEEEEECCCCC
T ss_pred --cEEEEEeCCCCC
Confidence 367788875443
No 39
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.45 E-value=0.00081 Score=58.77 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=62.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
..+..+|.|.+||+.+||+++.+.+..+- .|....++.-..+. ..-.-|||.|.+.+++...++.++++.|. |
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g 108 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSG--DIKKIIMGLDKMKK--TACGFCFVEYYSRADAENAMRYINGTRLD---D 108 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTC--CEEEEEEEEESSHHHHHHHHHHTTTSEET---T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCC--ccceEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 34678999999999999999999998763 35544444332221 12356999999999999999999999983 2
Q ss_pred CeeeeeEEecc
Q 010249 84 VQFKTIVEYAP 94 (514)
Q Consensus 84 ne~~AiVEfAP 94 (514)
....|++|.
T Consensus 109 --~~l~V~~a~ 117 (156)
T 1h2v_Z 109 --RIIRTDWDA 117 (156)
T ss_dssp --EECEEEEES
T ss_pred --eEEEEEECC
Confidence 467888885
No 40
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.44 E-value=0.0011 Score=54.99 Aligned_cols=87 Identities=17% Similarity=0.165 Sum_probs=64.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
..+..+|.|.+||+.+||+++.+.+..+ +.|.....+..+.+.+ ...-|||.|.+.+++...++.+++ .| +.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~Ai~~~~~-~~-~g-- 85 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGF--GDIEEAVVITDRQTGK--SRGYGFVTMADRAAAERACKDPNP-II-DG-- 85 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTT--SCEEEEEESCCSSSCC--CCSEEEEEESSHHHHHHHHTCSSC-EE-TT--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeeEEEEEEcCCCCc--cceEEEEEECCHHHHHHHHHhCCC-cC-CC--
Confidence 4567899999999999999999999875 3465555544333221 224699999999999999999997 44 32
Q ss_pred CeeeeeEEeccCCCCCC
Q 010249 84 VQFKTIVEYAPSQRVPK 100 (514)
Q Consensus 84 ne~~AiVEfAPYQKvPk 100 (514)
....|++|--...|.
T Consensus 86 --~~l~V~~a~~~~~~~ 100 (116)
T 2cqd_A 86 --RKANVNLAYLGAKPR 100 (116)
T ss_dssp --EECEEEESTTTCCCC
T ss_pred --EEEEEEEcccCCCcc
Confidence 467899987655554
No 41
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.44 E-value=0.00069 Score=54.79 Aligned_cols=75 Identities=23% Similarity=0.265 Sum_probs=60.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCC
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGV 84 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGn 84 (514)
.+..+|.|++||+.+|++++.+.+..+-.+.|.......| -|||.|.+.+++...++.++|+.|. |
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g----------~afV~f~~~~~A~~A~~~l~g~~~~---g- 78 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD----------YAFVHFSNREDAVEAMKALNGKVLD---G- 78 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSS----------EEEEEESSHHHHHHHHHHHSSEEET---T-
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCC----------eEEEEeCCHHHHHHHHHHhCCCEeC---C-
Confidence 4568999999999999999999999864455655444333 7999999999999999999999884 2
Q ss_pred eeeeeEEecc
Q 010249 85 QFKTIVEYAP 94 (514)
Q Consensus 85 e~~AiVEfAP 94 (514)
....|+||-
T Consensus 79 -~~l~v~~a~ 87 (99)
T 2cpd_A 79 -SPIEVTLAK 87 (99)
T ss_dssp -EEEEEECCC
T ss_pred -cEEEEEECC
Confidence 366788773
No 42
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.44 E-value=0.00099 Score=54.08 Aligned_cols=85 Identities=21% Similarity=0.258 Sum_probs=63.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
.+.+..+|.|.+||+.+||+++.+.+..+ +.|....++..+.+. ....-|||.|.+.+++...++.++|+.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-- 84 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPF--GSISRIYLAKDKTTG--QSKGFAFISFHRREDAARAIAGVSGFGYDH-- 84 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTT--CCEEEEEEEECSSSC--SEEEEEEEEESSHHHHHHHHHHTTTCEETT--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEeecCCCC--ceeeEEEEEECCHHHHHHHHHHcCCCeeCC--
Confidence 35678999999999999999999988875 345554444333222 123569999999999999999999998742
Q ss_pred CCeeeeeEEeccCC
Q 010249 83 GVQFKTIVEYAPSQ 96 (514)
Q Consensus 83 Gne~~AiVEfAPYQ 96 (514)
....|+||--.
T Consensus 85 ---~~l~v~~a~~~ 95 (103)
T 2cq0_A 85 ---LILNVEWAKPS 95 (103)
T ss_dssp ---EECEEEESSCC
T ss_pred ---cEEEEEECCCC
Confidence 36778887543
No 43
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.43 E-value=0.00069 Score=56.23 Aligned_cols=84 Identities=13% Similarity=0.209 Sum_probs=58.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCe---eEe
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHV---FVN 80 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~v---FvD 80 (514)
....-.|.||+|||..||+++.+.+.++-.-.+.....+.-+.+.+ .-.-|||.|.+.+++....+.++|.. .+|
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~--srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQ--NRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSS--CSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCC--CceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 3456789999999999999999999986422232333333222211 12459999999999999999999863 344
Q ss_pred CCCCeeeeeEEec
Q 010249 81 EKGVQFKTIVEYA 93 (514)
Q Consensus 81 sKGne~~AiVEfA 93 (514)
.+ +-.|+||
T Consensus 84 Gr----~i~V~~A 92 (95)
T 2lkz_A 84 GK----TIGVDFA 92 (95)
T ss_dssp TE----EEEEEEC
T ss_pred CE----EEEEEEc
Confidence 42 5677776
No 44
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.40 E-value=0.0014 Score=52.87 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=61.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
.+.+..+|.|.+||+.+||+++.+.+..+ +.|....++.-+...+ .-.-|||.|.+.+++...++ ++++.|.+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~A~~-~~~~~~~g-- 78 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKF--GVVTEVVMIYDAEKQR--PRGFGFITFEDEQSVDQAVN-MHFHDIMG-- 78 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSS--SCEEEEEECCCTTTCS--CCSEEEEEESSHHHHHHHHH-HCCCBSSS--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCCC--CCceEEEEECCHHHHHHHHH-hCCCEECC--
Confidence 45677899999999999999999999875 4565555543322221 12569999999999999998 89987743
Q ss_pred CCeeeeeEEeccC
Q 010249 83 GVQFKTIVEYAPS 95 (514)
Q Consensus 83 Gne~~AiVEfAPY 95 (514)
....|++|--
T Consensus 79 ---~~l~V~~a~~ 88 (99)
T 2dgs_A 79 ---KKVEVKRAEP 88 (99)
T ss_dssp ---CBCEEEECCC
T ss_pred ---eEEEEEECCC
Confidence 2567887753
No 45
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.39 E-value=0.00088 Score=54.14 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=60.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
..+..+|.|.+||+.+||+++.+.+..+- .|....+... -.-|||.|.+.+++...++.++|+.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~~~~~--------kg~afV~f~~~~~a~~a~~~l~g~~~~g--- 78 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYG--KAGEVFIHKD--------KGFGFIRLETRTLAEIAKVELDNMPLRG--- 78 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTC--CCSEEEEETT--------TTEEEEECSSSHHHHHHHHHHTTCCBTT---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcC--CeEEEEEecC--------CCEEEEEECCHHHHHHHHHHhCCCEeCC---
Confidence 45678999999999999999999998753 3444444421 2579999999999999999999998743
Q ss_pred CeeeeeEEeccC
Q 010249 84 VQFKTIVEYAPS 95 (514)
Q Consensus 84 ne~~AiVEfAPY 95 (514)
....|+||--
T Consensus 79 --~~l~v~~a~~ 88 (99)
T 2cpj_A 79 --KQLRVRFACH 88 (99)
T ss_dssp --BCCEEEESSC
T ss_pred --ceEEEEEcCC
Confidence 3567888744
No 46
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.39 E-value=0.00088 Score=54.15 Aligned_cols=82 Identities=15% Similarity=0.252 Sum_probs=59.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeE--------EEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNW--------VSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFN 74 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdw--------fyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fd 74 (514)
++.+..+|.|++||+.+||+++.+.+...- .|.. ...+.-+.+. ....-|||.|.+.+++...++.++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~~~~~~~v~i~~~~~~g--~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIG--IIKTNKKTGQPMINLYTDRETG--KLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTS--CBCEETTTTEESEEEEECTTTC--SEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhC--CEeeccccccccEEEEecCCCC--CeeeEEEEEECCHHHHHHHHHHhC
Confidence 467889999999999999999999998753 3433 2332221111 123569999999999999999999
Q ss_pred CCeeEeCCCCeeeeeEEec
Q 010249 75 GHVFVNEKGVQFKTIVEYA 93 (514)
Q Consensus 75 G~vFvDsKGne~~AiVEfA 93 (514)
|+.|.+. ...|++|
T Consensus 85 g~~~~g~-----~l~V~~A 98 (99)
T 2la6_A 85 GKEFSGN-----PIKVSFA 98 (99)
T ss_dssp TCBSSSS-----BCEEEEC
T ss_pred CCEeCCc-----EEEEEec
Confidence 9987532 4566665
No 47
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.38 E-value=0.00097 Score=54.55 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=61.2
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhC------CC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFN------GH 76 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fd------G~ 76 (514)
.+.+..+|.|++||+.+||+++.+.+..+ +.|.....+.-+.+. ....-|||.|.+.+++...++.++ ++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~ 86 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQF--GDLKYVRVVLHPDTE--HSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL 86 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCSSSC--CBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCC--CCccEEEEEECCHHHHHHHHHHhccccccCCc
Confidence 34577899999999999999999999875 345544443322211 123569999999999999999999 87
Q ss_pred eeEeCCCCeeeeeEEecc
Q 010249 77 VFVNEKGVQFKTIVEYAP 94 (514)
Q Consensus 77 vFvDsKGne~~AiVEfAP 94 (514)
.|.+ ....|+||-
T Consensus 87 ~~~g-----~~l~v~~a~ 99 (111)
T 1x4h_A 87 KLDG-----RQLKVDLAV 99 (111)
T ss_dssp ESSS-----CEEEEECCC
T ss_pred EEcC-----EEEEEEECC
Confidence 7632 256778774
No 48
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.38 E-value=0.00087 Score=57.28 Aligned_cols=82 Identities=21% Similarity=0.234 Sum_probs=62.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCC
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGV 84 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGn 84 (514)
.+..+|.|++||+.+|++++.+.+..+ +.|.....+..+...+ .-.-|||.|.+.+++....+.++|..|. |.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~ 159 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKY--GSIVQKNILRDKLTGR--PRGVAFVRYNKREEAQEAISALNNVIPE---GG 159 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSS--SCEEEEEEEECTTTCC--EEEEEEEEESSHHHHHHHHHHHTTCCCT---TC
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcC--CcEEEEEEEEcCCCCC--cceEEEEEECCHHHHHHHHHHhcCCEec---CC
Confidence 456899999999999999999999875 3466656555443222 1245999999999999999999999874 33
Q ss_pred eeeeeEEec
Q 010249 85 QFKTIVEYA 93 (514)
Q Consensus 85 e~~AiVEfA 93 (514)
..+-.|+||
T Consensus 160 ~~~l~V~~A 168 (168)
T 1b7f_A 160 SQPLSVRLA 168 (168)
T ss_dssp SSCCEEEEC
T ss_pred CeEEEEEeC
Confidence 346667775
No 49
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.37 E-value=0.00088 Score=54.51 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=61.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
++.+..+|.|.+||+.+||+++.+.+..+ + |.....+.-+.+. ....-|||.|.+.+++...+ .++|+.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--g-i~~v~i~~~~~~g--~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-- 82 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDL--S-IRSVRLVRDKDTD--KFKGFCYVEFDEVDSLKEAL-TYDGALLGD-- 82 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTS--C-EEEEEEEECSSSC--SEEEEEEEEESSHHHHHHHG-GGTTCEETT--
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhC--C-ceEEEEeecCCCC--ccceEEEEEECCHHHHHHHH-hhCCCeECC--
Confidence 35577899999999999999999999986 3 5554444332211 12346999999999999999 899988732
Q ss_pred CCeeeeeEEeccC
Q 010249 83 GVQFKTIVEYAPS 95 (514)
Q Consensus 83 Gne~~AiVEfAPY 95 (514)
....|++|--
T Consensus 83 ---~~l~V~~a~~ 92 (103)
T 2dng_A 83 ---RSLRVDIAEG 92 (103)
T ss_dssp ---EECEEEECCC
T ss_pred ---eEEEEEEecC
Confidence 3677888753
No 50
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.37 E-value=0.0009 Score=55.14 Aligned_cols=79 Identities=9% Similarity=0.092 Sum_probs=62.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
+....+|.|.+||+.+|++++.+.+..+ +.|....++.. -.-|||.|.+.+++...++.++|+.|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~--------~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 88 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPE--------KGYSFVRFSTHESAAHAIVSVNGTTIEG--- 88 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHH--SCEEEEEEETT--------TTEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeCC--------CCEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 4567899999999999999999999875 34555555443 3579999999999999999999998742
Q ss_pred CeeeeeEEeccCCC
Q 010249 84 VQFKTIVEYAPSQR 97 (514)
Q Consensus 84 ne~~AiVEfAPYQK 97 (514)
....|+||--+.
T Consensus 89 --~~l~v~~a~~~~ 100 (109)
T 1x4g_A 89 --HVVKCYWGKESP 100 (109)
T ss_dssp --EECEEECCCCCC
T ss_pred --cEEEEEecCCCC
Confidence 367788875443
No 51
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.36 E-value=0.00059 Score=56.93 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=60.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
++.+..+|.|++||+.+|++++.+.+..+ |.|....++..+.+. ....-|||.|.+.+++...++.++|+.|.+.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g--~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~- 96 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPF--GRIESIQLMMDSETG--RSKGYGFITFSDSECAKKALEQLNGFELAGR- 96 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTT--SCEEEEEEEEETTTT--EEEEEEEEEESCHHHHHHHHHHHTTCCSSSS-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCC--ccceEEEEEECCHHHHHHHHHHcCCCEECCE-
Confidence 46678899999999999999999999875 345544444322211 1235799999999999999999999887432
Q ss_pred CCeeeeeEEec
Q 010249 83 GVQFKTIVEYA 93 (514)
Q Consensus 83 Gne~~AiVEfA 93 (514)
...|++|
T Consensus 97 ----~l~V~~a 103 (108)
T 2jrs_A 97 ----PMKVGHV 103 (108)
T ss_dssp ----CCEEECS
T ss_pred ----EEEEEEc
Confidence 4566665
No 52
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.35 E-value=0.0013 Score=51.01 Aligned_cols=78 Identities=12% Similarity=0.162 Sum_probs=57.8
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCeee
Q 010249 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFK 87 (514)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne~~ 87 (514)
++|.|++||+.+|++++.+.+... +.|.....+....+. ....-|||.|.+.+++....+.++|+.|. | ..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~--~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g--~~ 72 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDF--PSYLSGHVMWDMQTG--SSRGYGFVSFTSQDDAQNAMDSMQGQDLN---G--RP 72 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTS--TTEEEEEEEECTTTC--CEEEEEEEEESCHHHHHHHHHHHTTCEET---T--EE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEEcCCCC--CccceEEEEECCHHHHHHHHHHhcCCeeC---C--cE
Confidence 589999999999999999999875 345544444332221 22356999999999999999999999983 2 25
Q ss_pred eeEEecc
Q 010249 88 TIVEYAP 94 (514)
Q Consensus 88 AiVEfAP 94 (514)
..|++|-
T Consensus 73 l~v~~a~ 79 (83)
T 3md1_A 73 LRINWAA 79 (83)
T ss_dssp CEEEECC
T ss_pred EEEEecC
Confidence 5677663
No 53
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.34 E-value=0.0011 Score=54.91 Aligned_cols=82 Identities=10% Similarity=0.066 Sum_probs=60.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
..+..+|.|++||+.+||+++.+.+..+- .|.....+..+... ....-|||.|.+.+++...++.++++.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 94 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFG--NVVSAKVFIDKQTN--LSKCFGFVSYDNPVSAQAAIQSMNGFQIGM--- 94 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGS--CCSEEEEEECSSSC--SEEEEEEEECSSHHHHHHHHHHHTTCEETT---
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECCCCC--CcCccEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 34568999999999999999999998752 34444444332211 123459999999999999999999998742
Q ss_pred CeeeeeEEecc
Q 010249 84 VQFKTIVEYAP 94 (514)
Q Consensus 84 ne~~AiVEfAP 94 (514)
....|+||-
T Consensus 95 --~~l~V~~a~ 103 (115)
T 2cpz_A 95 --KRLKVQLKR 103 (115)
T ss_dssp --EECEEECCC
T ss_pred --EEEEEEEcC
Confidence 367788774
No 54
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.34 E-value=0.0011 Score=55.41 Aligned_cols=74 Identities=22% Similarity=0.303 Sum_probs=59.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
.+.+..+|.|.+||+.+||+++.+.+..+- .|....++ -.-|||.|.+.+++....+.++|+.| .
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~i~----------kg~afV~f~~~~~A~~Ai~~l~g~~~---~ 91 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFG--PMKEVKIL----------NGFAFVEFEEAESAAKAIEEVHGKSF---A 91 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTS--CCCEEEEE----------TTEEEEECSSHHHHHHHHHHHTTCEE---T
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcC--CEEEEEEE----------CCEEEEEECCHHHHHHHHHHcCCCEE---C
Confidence 456788999999999999999999998753 45544444 25799999999999999999999998 2
Q ss_pred CCeeeeeEEec
Q 010249 83 GVQFKTIVEYA 93 (514)
Q Consensus 83 Gne~~AiVEfA 93 (514)
| ....|+||
T Consensus 92 g--~~l~V~~a 100 (108)
T 2jvo_A 92 N--QPLEVVYS 100 (108)
T ss_dssp T--EECEEESC
T ss_pred C--eEEEEEEe
Confidence 3 35677776
No 55
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.33 E-value=0.001 Score=56.32 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=59.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
+.+..+|.|++||+.+|++++.+.+..+ +.|.....+..+.+. ..-.-|||.|.+.+++...++.++|+.|. |
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g 132 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYETE--KHRGFAFVEFELAEDAAAAIDNMNESELF---G 132 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGG--SCEEEEECCCCTTTC--CCCSEEEEEESCHHHHHHHHHHSTEEEET---T
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhc--CCEEEEEEeecCCCC--CcCcEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 4567899999999999999999999875 345554443332221 12356999999999999999999998874 2
Q ss_pred CeeeeeEEec
Q 010249 84 VQFKTIVEYA 93 (514)
Q Consensus 84 ne~~AiVEfA 93 (514)
....|+||
T Consensus 133 --~~l~v~~A 140 (140)
T 2ku7_A 133 --RTIRVNLA 140 (140)
T ss_dssp --EEEEEEC-
T ss_pred --EEEEEEeC
Confidence 24566654
No 56
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.32 E-value=0.0007 Score=54.87 Aligned_cols=80 Identities=23% Similarity=0.244 Sum_probs=53.5
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCeee
Q 010249 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFK 87 (514)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne~~ 87 (514)
..|.||+||+.+||+++.+.+...-. .|.....+.-+.+. ..-.-|||.|.+.+++...++.+++....+. ..
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~-~v~~v~i~~d~~t~--~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g----r~ 74 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGV-QAREVRLMRNKSSG--QSRGFAFVEFSHLQDATRWMEANQHSLNILG----QK 74 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTC-CCSBCCSSSCSSSC--CCSSEEEEECSSHHHHHHHHHTTTTEEEETT----EE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCC-EeEEEEEEecCCCC--CcCceEEEEecCHHHHHHHHHhcCCCeEECC----EE
Confidence 36899999999999999999987531 23222222211111 1124599999999999998887765544443 36
Q ss_pred eeEEecc
Q 010249 88 TIVEYAP 94 (514)
Q Consensus 88 AiVEfAP 94 (514)
..|+||-
T Consensus 75 i~V~~a~ 81 (91)
T 2lxi_A 75 VSMHYSD 81 (91)
T ss_dssp EEEECCC
T ss_pred EEEEEcC
Confidence 7788873
No 57
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=97.31 E-value=0.0012 Score=54.94 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=60.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
..+..+|.|++||+.+||+++.+.+..+ +.|.....+..+.+. ....-|||.|.+.++....++.++|+.|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 109 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPF--GNVISAKVFIDKQTS--LSKCFGFVSFDNPDSAQVAIKAMNGFQVGT--- 109 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTS--CEEEEEEECCCSSSS--CCCCEEEEEEESSHHHHHHHHHCCCCEETT---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCCC--CcCcEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 4466899999999999999999999875 345554444332221 123579999999999999999999988742
Q ss_pred CeeeeeEEec
Q 010249 84 VQFKTIVEYA 93 (514)
Q Consensus 84 ne~~AiVEfA 93 (514)
....|+||
T Consensus 110 --~~l~V~~a 117 (118)
T 2khc_A 110 --KRLKVQLK 117 (118)
T ss_dssp --EECCEEEC
T ss_pred --EEEEEEec
Confidence 24566664
No 58
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.29 E-value=0.0016 Score=53.78 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=61.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
+|.+...|.|++||+.+|++++.+.+..+ |.|.....+.. .....-|||.|.+.+++....+.++|+.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~-----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--- 73 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKY--GPIRQIRVGNT-----PETRGTAYVVYEDIFDAKNAVDHLSGFNVS--- 73 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEECS-----TTTTTCEEEEESSHHHHHHHHHHHTTCBSS---
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeC-----CCCCcEEEEEECCHHHHHHHHHHcCCCEEC---
Confidence 45677899999999999999999999875 34544444321 112467999999999999999999999883
Q ss_pred CCeeeeeEEecc
Q 010249 83 GVQFKTIVEYAP 94 (514)
Q Consensus 83 Gne~~AiVEfAP 94 (514)
| ....|+||-
T Consensus 74 g--~~l~v~~a~ 83 (115)
T 3lqv_A 74 N--RYLVVLYYN 83 (115)
T ss_dssp S--CBCEEEECC
T ss_pred C--eEEEEEEec
Confidence 2 256788774
No 59
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.29 E-value=0.0012 Score=53.66 Aligned_cols=81 Identities=9% Similarity=0.139 Sum_probs=60.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCC
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGV 84 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGn 84 (514)
.+..+|.|.+||+.+|++++.+.+..+ |.|..........+. ..-.-|||.|.+.+++...++.++|+.|.+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---- 92 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEY--GEIKNIHLNLDRRTG--YLKGYTLVEYETYKEAQAAMEGLNGQDLMG---- 92 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTS--SEEEEEEEEESCHHHHHHHHHHHTTCBSSS----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc--CCeEEEEEEecCCCC--ceeeEEEEEECCHHHHHHHHHHhcCCEECC----
Confidence 356789999999999999999999876 345554444333221 123569999999999999999999987753
Q ss_pred eeeeeEEecc
Q 010249 85 QFKTIVEYAP 94 (514)
Q Consensus 85 e~~AiVEfAP 94 (514)
....|+||-
T Consensus 93 -~~l~V~~a~ 101 (106)
T 1p27_B 93 -QPISVDWCF 101 (106)
T ss_dssp -SBCEEEESE
T ss_pred -cEEEEEeec
Confidence 256777763
No 60
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.29 E-value=0.0022 Score=53.94 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=65.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
+.+..+|.|++||+.+||+++.+.+..+ +.|.......-. .. ....-|||.|.+.+++....+.++|+.|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~-~g--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--- 103 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEF--GTLKKAAVDYDR-SG--RSLGTADVHFERRADALKAMKQYKGVPLDG--- 103 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTT--SCCSEEEEECCS-SS--SCCSEEEEEESSHHHHHHHHHHHTTEESSS---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEECC-CC--CEeeEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 4567899999999999999999999875 345544444333 21 123579999999999999999999998743
Q ss_pred CeeeeeEEeccCCCCCC
Q 010249 84 VQFKTIVEYAPSQRVPK 100 (514)
Q Consensus 84 ne~~AiVEfAPYQKvPk 100 (514)
....|++|.-...+.
T Consensus 104 --~~l~V~~a~~~~~~~ 118 (124)
T 2kt5_A 104 --RPMDIQLVASQIDLE 118 (124)
T ss_dssp --CEEEEEEECCTTCCC
T ss_pred --cEEEEEEeCCCCCCC
Confidence 367889887665543
No 61
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.28 E-value=0.0013 Score=52.01 Aligned_cols=82 Identities=18% Similarity=0.301 Sum_probs=61.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
+..+..+|.|.+||+.+|++++.+.+..+ +.|....... + .......|||.|.+.+++...++.++|+.|.+.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~~~i~~-~---~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~- 76 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNEC--GHVLYADIKM-E---NGKSKGCGVVKFESPEVAERACRMMNGMKLSGR- 76 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTT--SCEEEEEEEE-S---SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB-
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEc-c---CCCcceEEEEEECCHHHHHHHHHHhCCCEECCc-
Confidence 34577899999999999999999999875 3455444443 1 112235699999999999999999999987432
Q ss_pred CCeeeeeEEeccC
Q 010249 83 GVQFKTIVEYAPS 95 (514)
Q Consensus 83 Gne~~AiVEfAPY 95 (514)
...|++|--
T Consensus 77 ----~l~v~~a~~ 85 (92)
T 2dgv_A 77 ----EIDVRIDRN 85 (92)
T ss_dssp ----CCCCEECSC
T ss_pred ----EEEEEEcCC
Confidence 456666643
No 62
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.28 E-value=0.0019 Score=52.62 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=59.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
..+..+|.|++||+.+||+++.+.+..+ + |.....+...... .....-|||.|.+.+++...+ .++++.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G-i~~v~i~~~~~~~-g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--- 83 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGL--N-ISAVRLPREPSNP-ERLKGFGYAEFEDLDSLLSAL-SLNEESLGN--- 83 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTS--C-EEEEECCBCSSCT-TSBCSCEEEEESSHHHHHHHH-GGGTCEETT---
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHC--C-ceEEEEecCCCCC-CCcCeEEEEEECCHHHHHHHH-hcCCCEeCC---
Confidence 3467899999999999999999999875 4 5554443332210 111245999999999999999 999998732
Q ss_pred CeeeeeEEecc
Q 010249 84 VQFKTIVEYAP 94 (514)
Q Consensus 84 ne~~AiVEfAP 94 (514)
....|++|-
T Consensus 84 --~~l~V~~a~ 92 (104)
T 1wi8_A 84 --KRIRVDVAD 92 (104)
T ss_dssp --EECEEEECC
T ss_pred --cEEEEEEcc
Confidence 356788774
No 63
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.27 E-value=0.0015 Score=53.89 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=59.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCccee--------EEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYN--------WVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNG 75 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvd--------wfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG 75 (514)
..+..+|.|.+||+.+|++++.+.+..+- .|. ....+..+... ....-|||.|.+.+++...++.++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~~~~~~~v~i~~~~~~g--~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCG--VVKMNKRTGQPMIHIYLDKETG--KPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTS--CBCBCSSSCCBSEECCBCTTTC--SBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcC--CEeEccccCccCEEEEEeCCCC--CeeeEEEEEECCHHHHHHHHHHcCC
Confidence 45778999999999999999999998753 232 11222211111 1235699999999999999999999
Q ss_pred CeeEeCCCCeeeeeEEecc
Q 010249 76 HVFVNEKGVQFKTIVEYAP 94 (514)
Q Consensus 76 ~vFvDsKGne~~AiVEfAP 94 (514)
+.|.+ ....|++|-
T Consensus 88 ~~~~g-----~~l~V~~a~ 101 (113)
T 2cpe_A 88 KDFQG-----SKLKVSLAR 101 (113)
T ss_dssp CEETT-----EECEEECSS
T ss_pred CccCC-----CEEEEEECC
Confidence 99842 356777763
No 64
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.27 E-value=0.0021 Score=55.13 Aligned_cols=85 Identities=14% Similarity=0.168 Sum_probs=61.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCe
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQ 85 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne 85 (514)
+..+|.|++||+.+||+++.+.+..+ |.|.....+............-|||.|.+.+++....+.++|..+.+..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~- 78 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQY--GAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHH- 78 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSS-
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCcc-
Confidence 46799999999999999999999875 345554444333321112345699999999999999999999988766544
Q ss_pred eeeeEEecc
Q 010249 86 FKTIVEYAP 94 (514)
Q Consensus 86 ~~AiVEfAP 94 (514)
...|.++.
T Consensus 79 -~~~~~~~~ 86 (175)
T 3nmr_A 79 -PIQMKPAD 86 (175)
T ss_dssp -CCEEEECG
T ss_pred -ceEEcccc
Confidence 33444443
No 65
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.26 E-value=0.0013 Score=55.70 Aligned_cols=81 Identities=20% Similarity=0.230 Sum_probs=60.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCe
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQ 85 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne 85 (514)
...+|.|++||+.+|++++.+.+..+ +.+....+....... ..-.-|||.|.+.++.....+.++|..|. |..
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~ 159 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVTG--VSRGVGFIRFDKRIEAEEAIKGLNGQKPS---GAT 159 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCCCT---TCS
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhc--CCEeEEEEEecCCCC--CccceEEEEeCCHHHHHHHHHHhcCCccC---CCc
Confidence 56789999999999999999999976 345555554433221 12345999999999999999999999873 333
Q ss_pred eeeeEEec
Q 010249 86 FKTIVEYA 93 (514)
Q Consensus 86 ~~AiVEfA 93 (514)
.+..|.||
T Consensus 160 ~~i~v~~A 167 (167)
T 1fxl_A 160 EPITVKFA 167 (167)
T ss_dssp SCCEEEEC
T ss_pred cceEEEeC
Confidence 45677776
No 66
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.25 E-value=0.0012 Score=52.48 Aligned_cols=78 Identities=14% Similarity=0.271 Sum_probs=61.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCC
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGV 84 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGn 84 (514)
....+|.|++||+.+||+++.+.+..+ . |..... . ..-.-|||.|.+.+++....+.++|+.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~--v~~~~i-~-------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---- 67 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-D--LKYCYV-D-------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG---- 67 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-C--CCCEEE-E-------GGGTEEEECCSCHHHHHHHHHHHTTEEETT----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-C--eEEEEE-e-------CCCcEEEEEECCHHHHHHHHHHhCCCeECC----
Confidence 457899999999999999999999886 2 333333 1 223579999999999999999999998743
Q ss_pred eeeeeEEeccCCCC
Q 010249 85 QFKTIVEYAPSQRV 98 (514)
Q Consensus 85 e~~AiVEfAPYQKv 98 (514)
....|++||-..+
T Consensus 68 -~~l~V~~a~~~~~ 80 (88)
T 1wg1_A 68 -KDLIVQLQPTDAL 80 (88)
T ss_dssp -EEEEEEECCCCCC
T ss_pred -cEEEEEEcCCCce
Confidence 3678999876543
No 67
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.25 E-value=0.002 Score=54.97 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=60.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCC
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGV 84 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGn 84 (514)
++..+|.|++||+.+||+++.+.+..+ |.|....++..+.+. ....-|||.|.+.+++....+.++|..|. |
T Consensus 1 ~~~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g- 72 (168)
T 1b7f_A 1 ASNTNLIVNYLPQDMTDRELYALFRAI--GPINTCRIMRDYKTG--YSYGYAFVDFTSEMDSQRAIKVLNGITVR---N- 72 (168)
T ss_dssp -CCSEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCEETTTT--EECSEEEEEESSHHHHHHHHHHHTTCEET---T-
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEEeCCCC--ccceEEEEEECCHHHHHHHHHhcCCCEeC---C-
Confidence 356899999999999999999999875 345444443322111 12256999999999999999999999883 2
Q ss_pred eeeeeEEeccCCC
Q 010249 85 QFKTIVEYAPSQR 97 (514)
Q Consensus 85 e~~AiVEfAPYQK 97 (514)
....|+++.-+.
T Consensus 73 -~~l~v~~~~~~~ 84 (168)
T 1b7f_A 73 -KRLKVSYARPGG 84 (168)
T ss_dssp -EECEEEECCCCS
T ss_pred -cEEEEEecCCCc
Confidence 356777776443
No 68
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.24 E-value=0.0012 Score=52.70 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=59.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
+....+|.|.+||+.+|++++.+.+..+ +.|....++.-+. ...+|||.|.+.+++...++.++|+.|. |
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~~~~i~~~~-----~~~~afV~f~~~~~a~~Ai~~l~g~~~~---g 81 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQY--GVVESCEQVNTDS-----ETAVVNVTYSSKDQARQALDKLNGFQLE---N 81 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHH--SCEEEEEEECCSS-----SSEEEEEEESSHHHHHHHHHHHTTCBCS---S
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhc--CCeEEEEEeecCC-----CCCEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 3457899999999999999999999875 3455442232221 1233999999999999999999999884 2
Q ss_pred CeeeeeEEeccC
Q 010249 84 VQFKTIVEYAPS 95 (514)
Q Consensus 84 ne~~AiVEfAPY 95 (514)
. ...|+||.-
T Consensus 82 ~--~l~V~~a~~ 91 (96)
T 2e44_A 82 F--TLKVAYIPD 91 (96)
T ss_dssp C--BCEEEECCC
T ss_pred c--EEEEEEcCc
Confidence 2 567887753
No 69
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.23 E-value=0.0019 Score=54.13 Aligned_cols=78 Identities=19% Similarity=0.304 Sum_probs=60.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCe
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQ 85 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne 85 (514)
...+|.|++||+.+||+++.+.+..+ |.|......+. -.-|||.|.+.+++..-++.++|+.|.+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g----- 73 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRF--GSLGRVLLPEG--------GITAIVEFLEPLEARKAFRHLAYSKFHH----- 73 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCSS--------SSCEEEEESCHHHHHHHHHHHTTCBSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEeCC--------CCEEEEEeCCHHHHHHHHHHhCCCEECC-----
Confidence 35789999999999999999999875 44655444321 1249999999999999999999998853
Q ss_pred eeeeEEeccCCCC
Q 010249 86 FKTIVEYAPSQRV 98 (514)
Q Consensus 86 ~~AiVEfAPYQKv 98 (514)
....|+||+-..+
T Consensus 74 ~~l~V~~a~~~~~ 86 (111)
T 1whx_A 74 VPLYLEWAPIGVF 86 (111)
T ss_dssp SBCEEEEEETTTT
T ss_pred eEEEEEECCCCcc
Confidence 2568999976443
No 70
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0016 Score=52.59 Aligned_cols=80 Identities=16% Similarity=0.279 Sum_probs=60.4
Q ss_pred CCCCCCceEEEecCCC-CCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEe
Q 010249 2 KGPLDRTKVVVRNLPP-AITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVN 80 (514)
Q Consensus 2 k~p~~~~KVVIRrLPP-~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvD 80 (514)
....+..+|.|.+||+ .+||+++.+.+..+ +.|...... -.-|||.|.+.+++...++.++|..|.+
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~--G~v~~v~i~----------~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPY--GHIMQINIK----------NAFGFIQFDNPQSVRDAIECESQEMNFG 72 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTT--CCCCEEEEE----------TTEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhc--CCEEEEEEe----------CCEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 3456788999999999 99999999999875 334443442 2479999999999999999999998863
Q ss_pred CCCCeeeeeEEeccCCCC
Q 010249 81 EKGVQFKTIVEYAPSQRV 98 (514)
Q Consensus 81 sKGne~~AiVEfAPYQKv 98 (514)
. ...|++|.-..-
T Consensus 73 ~-----~l~V~~a~~~~~ 85 (96)
T 2kvi_A 73 K-----KLILEVSSSNAR 85 (96)
T ss_dssp T-----TBCEEEEECCCC
T ss_pred c-----EEEEEEcCcCCC
Confidence 2 567888754443
No 71
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.21 E-value=0.0018 Score=50.42 Aligned_cols=75 Identities=17% Similarity=0.139 Sum_probs=58.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHh-CCCeeEeCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFF-NGHVFVNEK 82 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~f-dG~vFvDsK 82 (514)
+.+..+|.|.+||+.+|++++.+.+..+ +.|....+... -.-|||.|.+.+++....+.+ +|+.|.+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~--G~i~~~~~~~~--------kg~afV~f~~~~~A~~a~~~l~~~~~~~g-- 76 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQF--GEIRTITVVQR--------QQCAFIQFATRQAAEVAAEKSFNKLIVNG-- 76 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTT--SCEEEEEEEGG--------GTEEEEEESSHHHHHHHHHTTTTTCEETT--
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhC--CCEeEEEEECC--------CCEEEEEECCHHHHHHHHHHhcCCeeECC--
Confidence 4466899999999999999999999875 34555555541 257999999999999999988 8877743
Q ss_pred CCeeeeeEEec
Q 010249 83 GVQFKTIVEYA 93 (514)
Q Consensus 83 Gne~~AiVEfA 93 (514)
....|+||
T Consensus 77 ---~~l~v~~a 84 (85)
T 2ytc_A 77 ---RRLNVKWG 84 (85)
T ss_dssp ---EECCEEEC
T ss_pred ---CEEEEEec
Confidence 35566665
No 72
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.21 E-value=0.002 Score=55.17 Aligned_cols=81 Identities=11% Similarity=0.121 Sum_probs=60.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCe
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQ 85 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne 85 (514)
+..+|.|++||+.+|++++.+.+..+ +.|....+..... ...-.-|||.|.+.+++....+.++|..+.+..|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~v~~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~-- 166 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSF--GQIEECRILRGPD---GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCS-- 166 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTT---SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCS--
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhC--CCEEEEEEEECCC---CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCC--
Confidence 56789999999999999999999876 3455545544321 1112349999999999999999999988776432
Q ss_pred eeeeEEec
Q 010249 86 FKTIVEYA 93 (514)
Q Consensus 86 ~~AiVEfA 93 (514)
.+..|.||
T Consensus 167 ~~l~V~~a 174 (175)
T 3nmr_A 167 SPMVVKFA 174 (175)
T ss_dssp SCCEEEEC
T ss_pred CCeEEEec
Confidence 35567765
No 73
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.19 E-value=0.0013 Score=55.41 Aligned_cols=77 Identities=18% Similarity=0.302 Sum_probs=58.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCe
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQ 85 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne 85 (514)
...+|.|.+||+.+||+++.+.+..+ +.|.....+.. .-|||.|.+.+++...++.++|+.|.+.....
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~~---------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~ 83 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREA--GDVCYADVYRD---------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 83 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGG--SCEEEEEECTT---------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEecC---------CEEEEEECCHHHHHHHHHHhCCCEECCcEeee
Confidence 56899999999999999999999875 34544333221 67999999999999999999999998766544
Q ss_pred eeeeEEec
Q 010249 86 FKTIVEYA 93 (514)
Q Consensus 86 ~~AiVEfA 93 (514)
....|+.+
T Consensus 84 ~~i~v~~~ 91 (115)
T 3beg_B 84 AYIRVKVD 91 (115)
T ss_dssp CBCEEEEC
T ss_pred EEEEeccC
Confidence 44555544
No 74
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.18 E-value=0.0018 Score=54.57 Aligned_cols=84 Identities=10% Similarity=0.046 Sum_probs=61.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
.+.+..+|.|++||+.+||+++.+.+..+ +.|.....+.-..+. ..-.-|||.|.+.+++..-++.++|..|..
T Consensus 2 g~~p~~~lfV~nL~~~~te~~L~~~F~~~--G~i~~v~i~~d~~tg--~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g-- 75 (110)
T 3s8s_A 2 GQIPLKEVTFARLNDNVRETFLKDMCRKY--GEVEEVEILLHPRTR--KHLGLARVLFTSTRGAKETVKNLHLTSVMG-- 75 (110)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred CCCCCcEEEEECCCCCCCHHHHHHHHHhc--CCeeEEEEEECCCCC--ceeeEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 35677899999999999999999999875 345443332222111 123459999999999999999999998843
Q ss_pred CCeeeeeEEeccC
Q 010249 83 GVQFKTIVEYAPS 95 (514)
Q Consensus 83 Gne~~AiVEfAPY 95 (514)
..-.|++|+.
T Consensus 76 ---r~i~V~~a~~ 85 (110)
T 3s8s_A 76 ---NIIHAQLDIK 85 (110)
T ss_dssp ---EECEEEECST
T ss_pred ---eEEEEEECCC
Confidence 2567888864
No 75
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=97.18 E-value=0.0013 Score=56.80 Aligned_cols=82 Identities=22% Similarity=0.180 Sum_probs=61.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
.+.+..+|.|.+||+.+||+++.+.+..+ +.|.....+....+. ....-|||.|.+.+++...++.++|..|.+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg--~~~G~afV~F~~~~~A~~Ai~~lng~~i~g-- 115 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKY--GPIADVSIVYDQQSR--RSRGFAFVYFENVDDAKEAKERANGMELDG-- 115 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTT--SCEEEEEEECCSSSS--CCCCEEEEEESCHHHHHHHHHHHTTCCSSS--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCC--ccceEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 35678899999999999999999999875 345554444332221 123569999999999999999999988743
Q ss_pred CCeeeeeEEec
Q 010249 83 GVQFKTIVEYA 93 (514)
Q Consensus 83 Gne~~AiVEfA 93 (514)
....|+||
T Consensus 116 ---~~l~V~~a 123 (129)
T 2kxn_B 116 ---RRIRVDFS 123 (129)
T ss_dssp ---SCCEESCC
T ss_pred ---EEEEEEEe
Confidence 24566665
No 76
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.17 E-value=0.0032 Score=51.64 Aligned_cols=81 Identities=14% Similarity=0.210 Sum_probs=61.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCC
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGV 84 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGn 84 (514)
.+..+|.|.+||+.+|++++.+.+..+ |.|....++...... ..-.-|||.|.+.+++...++.++|+.|. |
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g- 95 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDY--GEIKNIHLNLDRRTG--FSKGYALVEYETHKQALAAKEALNGAEIM---G- 95 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEECCBCTTTS--SBCSEEEEEESSHHHHHHHHHHHTTCEET---T-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCC--CcceEEEEEECCHHHHHHHHHHcCCCEEC---C-
Confidence 356789999999999999999999876 345554444332221 12357999999999999999999999883 2
Q ss_pred eeeeeEEecc
Q 010249 85 QFKTIVEYAP 94 (514)
Q Consensus 85 e~~AiVEfAP 94 (514)
....|+||-
T Consensus 96 -~~l~V~~a~ 104 (110)
T 1oo0_B 96 -QTIQVDWCF 104 (110)
T ss_dssp -EECEEEESE
T ss_pred -cEEEEEEcc
Confidence 367788774
No 77
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.17 E-value=0.0029 Score=51.66 Aligned_cols=74 Identities=18% Similarity=0.314 Sum_probs=58.9
Q ss_pred CCCCCceEEEecCCC-CCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeC
Q 010249 3 GPLDRTKVVVRNLPP-AITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNE 81 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP-~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDs 81 (514)
.+.+..+|.|++||+ .+|++++.+.+..+ |.|...... -.-|||.|.+.+++....+.++|..|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~--G~v~~v~i~----------~g~afV~f~~~~~A~~Ai~~l~g~~~~g- 84 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPY--GHIMQINIK----------NAFGFIQFDNPQSVRDAIEXESQEMNFG- 84 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGG--SCEEEEEEC----------SSEEEEEESSHHHHHHHHHHHTTSEETT-
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhc--CCEEEEEEe----------CCEEEEEECCHHHHHHHHHHcCCCEECC-
Confidence 355788999999999 99999999999875 345554442 3579999999999999999999998742
Q ss_pred CCCeeeeeEEec
Q 010249 82 KGVQFKTIVEYA 93 (514)
Q Consensus 82 KGne~~AiVEfA 93 (514)
....|+||
T Consensus 85 ----~~l~V~~a 92 (97)
T 2xnq_A 85 ----KKLILEVS 92 (97)
T ss_dssp ----EECEEEEC
T ss_pred ----EEEEEEec
Confidence 35677776
No 78
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.16 E-value=0.0022 Score=50.87 Aligned_cols=80 Identities=14% Similarity=0.083 Sum_probs=58.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
.+....+|.|++||+.+||+++.+.+..+ . |.....+.. . . ...-.-|||.|.+.+++...++ ++|..|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~--i~~v~i~~~-~-~-g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g-- 76 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-K--PVAIRIVRN-A-H-GNKTGYIFVDFSNEEEVKQALK-CNREYMGG-- 76 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-C--CSEEEEEEC-T-T-SCEEEEEEEECSSHHHHHHHHH-SCSEEETT--
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-C--ceEEEEEEC-C-C-CCCceEEEEEECCHHHHHHHHH-hCCceeCC--
Confidence 45678899999999999999999999986 2 444444333 1 1 1223579999999999999999 99988743
Q ss_pred CCeeeeeEEecc
Q 010249 83 GVQFKTIVEYAP 94 (514)
Q Consensus 83 Gne~~AiVEfAP 94 (514)
..-.|++|-
T Consensus 77 ---r~i~v~~a~ 85 (91)
T 2dgw_A 77 ---RYIEVFREK 85 (91)
T ss_dssp ---EEEEEEEES
T ss_pred ---cEEEEEECC
Confidence 245666653
No 79
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.16 E-value=0.0011 Score=55.54 Aligned_cols=80 Identities=19% Similarity=0.247 Sum_probs=57.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
|...++|.|++||+.+||+++.+.+..+ |.|.....+.-+- ..-.-|||.|.+.+++...++.++|+.|.+
T Consensus 2 P~~~~~lfV~nLp~~~te~~L~~~F~~~--G~v~~v~i~~d~~----~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g--- 72 (115)
T 4f25_A 2 PLGSGNIFIKNLDKSIDNKALYDTFSAF--GNILSCKVVCDEN----GSKGYGFVHFETQEAAERAIEKMNGMLLND--- 72 (115)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEEETT----EEEEEEEEEESCHHHHHHHHHHHTTCEETT---
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHhcc--CCEEEEEEeecCC----CCCceEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 5567899999999999999999999875 3454433332111 112459999999999999999999998743
Q ss_pred CeeeeeEEecc
Q 010249 84 VQFKTIVEYAP 94 (514)
Q Consensus 84 ne~~AiVEfAP 94 (514)
....|++|-
T Consensus 73 --~~i~V~~a~ 81 (115)
T 4f25_A 73 --RKVFVGRFK 81 (115)
T ss_dssp --EECEEEESS
T ss_pred --EEEEEEECC
Confidence 256677764
No 80
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.15 E-value=0.0015 Score=55.45 Aligned_cols=81 Identities=22% Similarity=0.356 Sum_probs=60.8
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCee
Q 010249 7 RTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQF 86 (514)
Q Consensus 7 ~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne~ 86 (514)
.++|.|++||+.+||+++.+.+..+ |.|.....+..+.+. ....-|||.|.+.+++....+.++|..|.+ .
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~v~~~~~~~~~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-----~ 72 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSI--GEIESCKLVRDKITG--QSLGYGFVNYIDPKDAEKAINTLNGLRLQT-----K 72 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCCC--cceeEEEEEECCHHHHHHHHHHcCCCccCC-----c
Confidence 5789999999999999999999875 345555554433222 123569999999999999999999988842 3
Q ss_pred eeeEEeccCC
Q 010249 87 KTIVEYAPSQ 96 (514)
Q Consensus 87 ~AiVEfAPYQ 96 (514)
...|+++.-.
T Consensus 73 ~l~v~~~~~~ 82 (167)
T 1fxl_A 73 TIKVSYARPS 82 (167)
T ss_dssp ECEEEECCCC
T ss_pred eEEEEecCCC
Confidence 5667777543
No 81
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.13 E-value=0.0019 Score=52.21 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=58.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
+.+..+|.|.+||+.+||+++.+.+..+. .+. .+.-+.. .....-|||.|.+.+++...++.++|+.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~--~~~---~~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 81 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV--RAR---IVTDRET--GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG--- 81 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS--EEE---EEECSSS--CSEEEEEEEECSSHHHHHHHHHHHTTCEETT---
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe--EEE---EEecCCC--CCcCcEEEEEECCHHHHHHHHHHhCCCeECC---
Confidence 45778999999999999999999888542 222 2221111 1123469999999999999999999998742
Q ss_pred CeeeeeEEecc
Q 010249 84 VQFKTIVEYAP 94 (514)
Q Consensus 84 ne~~AiVEfAP 94 (514)
....|+||-
T Consensus 82 --~~l~V~~a~ 90 (102)
T 2fc8_A 82 --NKVTLDWAK 90 (102)
T ss_dssp --EECEEEECC
T ss_pred --eEEEEEEec
Confidence 367888874
No 82
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=97.07 E-value=0.0026 Score=49.85 Aligned_cols=77 Identities=21% Similarity=0.218 Sum_probs=57.2
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCee
Q 010249 7 RTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQF 86 (514)
Q Consensus 7 ~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne~ 86 (514)
..+|.|++||+.+||+++.+.+..+ +.|..........+.+ ...-|||.|.+.+++.... .++|+.|.+ .
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~a~-~~~g~~~~g-----~ 75 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGC--GSVNRVTILCDKFSGH--PKGFAYIEFSDKESVRTSL-ALDESLFRG-----R 75 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGG--CCEEEEEEEESCSSSS--CCEEEEEEESSTHHHHHHG-GGTTCEETT-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEecCCCCC--cceEEEEEECCHHHHHHHH-hcCCCEECC-----c
Confidence 4689999999999999999999875 3455555543332222 2356999999999999998 999998743 2
Q ss_pred eeeEEec
Q 010249 87 KTIVEYA 93 (514)
Q Consensus 87 ~AiVEfA 93 (514)
...|++|
T Consensus 76 ~l~V~~a 82 (89)
T 3ucg_A 76 QIKVIPK 82 (89)
T ss_dssp ECEEEET
T ss_pred EEEEEEc
Confidence 4566666
No 83
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.07 E-value=0.0015 Score=52.80 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=58.2
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCeee
Q 010249 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFK 87 (514)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne~~ 87 (514)
++|.|.+||+.+||+++.+.+..+- .|........ .-.-|||.|.+.+++....+.++|+.|.+. .
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-----~ 66 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYG--PLRTVWIARN-------PPGFAFVEFEDPRDAEDAVRGLDGKVICGS-----R 66 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHC--CCSEEEEESS-------SSSEEEEECSSHHHHHHHHHHHHHSCSSSC-----C
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeeC-------CCCEEEEEECCHHHHHHHHHHHCCCeECCc-----E
Confidence 4799999999999999999998753 3554444443 235799999999999999999999987432 4
Q ss_pred eeEEeccCC
Q 010249 88 TIVEYAPSQ 96 (514)
Q Consensus 88 AiVEfAPYQ 96 (514)
..|++|--.
T Consensus 67 l~V~~a~~~ 75 (101)
T 2hvz_A 67 VRVELSTGM 75 (101)
T ss_dssp CEEEESSSC
T ss_pred EEEEEccCC
Confidence 678887543
No 84
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.07 E-value=0.003 Score=51.06 Aligned_cols=80 Identities=19% Similarity=0.174 Sum_probs=59.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
+.+..+|.|++||+.+||+++.+.+..+ +.|. .+. +. ......-|||.|.+.+++...++.++++.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--g~v~---~~~-~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 80 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKA--TFIK---VPQ-NQ--NGKSKGYAFIEFASFEDAKEALNSCNKREIEG--- 80 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSC--SEEE---CCB-CS--SSCBCSEEEEECSSHHHHHHHHHHTSSEEETT---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CEEE---EEE-CC--CCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC---
Confidence 4567899999999999999999998874 3341 111 11 11223579999999999999999999988752
Q ss_pred CeeeeeEEeccCC
Q 010249 84 VQFKTIVEYAPSQ 96 (514)
Q Consensus 84 ne~~AiVEfAPYQ 96 (514)
....|+||--+
T Consensus 81 --~~l~v~~a~~~ 91 (101)
T 2fc9_A 81 --RAIRLELQGPR 91 (101)
T ss_dssp --EEEEEEECSSC
T ss_pred --eEEEEEEcCCC
Confidence 35778887443
No 85
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.07 E-value=0.0034 Score=50.30 Aligned_cols=81 Identities=12% Similarity=0.086 Sum_probs=57.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCc-ceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGG-RYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~g-kvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
+....+|.|++||+.+||+++.+.+..+-.- .+.+..... ......-|||.|.+.+++...++.++|+.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~-----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-- 84 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE-----KGMPTGEAMVAFESRDEATAAVIDLNDRPIGS-- 84 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECS-----SSCEEEEEEEEESCHHHHHHHHHHTTTCEETT--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECC-----CCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC--
Confidence 3456899999999999999999998875311 122222211 01123569999999999999999999998743
Q ss_pred CCeeeeeEEecc
Q 010249 83 GVQFKTIVEYAP 94 (514)
Q Consensus 83 Gne~~AiVEfAP 94 (514)
....|++|-
T Consensus 85 ---~~l~V~~a~ 93 (98)
T 2cqp_A 85 ---RKVKLVLGS 93 (98)
T ss_dssp ---EECEEEESS
T ss_pred ---eEEEEEEcC
Confidence 356777763
No 86
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.0028 Score=51.21 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=53.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeE
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFV 79 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFv 79 (514)
+....+|.|.+||+.+||+++.+.+..+ +.|....... .-.-|||.|.+.+++...++.++|+.|.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~~~~--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 89 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNF--GFILDFKHYP--------EKGCCFIKYDTHEQAAVCIVALANFPFQ 89 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTT--SCCSEEEEET--------TTTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhC--CCEEEEEEec--------CCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 4457899999999999999999999875 3455444441 1356999999999999999999999875
No 87
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.06 E-value=0.0016 Score=52.68 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=59.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCe
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQ 85 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne 85 (514)
+..+|.|++||+.+|++++.+.+..+ +.|..........+ .....-|||.|.+.+++....+.++|+.|.+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~~~--g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----- 77 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEV--GPVVSFRLVYDRET--GKPKGYGFCEYQDQETALSAMRNLNGREFSG----- 77 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTT--SCCSEEEEEEETTT--TEEEEEEEEECSCHHHHHHHHHHSSSBSCSS-----
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhc--CCeeEEEEEeCCCC--CccceEEEEEECCHHHHHHHHHHhCCCeeCC-----
Confidence 34789999999999999999999875 23444333322211 1123569999999999999999999999832
Q ss_pred eeeeEEeccC
Q 010249 86 FKTIVEYAPS 95 (514)
Q Consensus 86 ~~AiVEfAPY 95 (514)
....|++|--
T Consensus 78 ~~l~v~~a~~ 87 (104)
T 1p1t_A 78 RALRVDNAAS 87 (104)
T ss_dssp SCBEEEETTC
T ss_pred cEEEEEeCCC
Confidence 2567887754
No 88
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.0054 Score=51.93 Aligned_cols=81 Identities=12% Similarity=0.159 Sum_probs=60.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
..+...|.|++||+.+|++++.+.+..+ +.|.....+...... ....-|||.|.+.+++....+.++|..|- |
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g 156 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDF--PSYLSGHVMWDMQTG--SSRGYGFVSFTSQDDAQNAMDSMQGQDLN---G 156 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTS--TTEEEEEEEECTTTC--CEEEEEEEEESCHHHHHHHHHHHTTCEET---T
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhcc--CCeeEEEEEecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCCccC---C
Confidence 4457789999999999999999999875 345555554332221 12345999999999999999999999873 2
Q ss_pred CeeeeeEEec
Q 010249 84 VQFKTIVEYA 93 (514)
Q Consensus 84 ne~~AiVEfA 93 (514)
..-.|+||
T Consensus 157 --~~i~v~~a 164 (166)
T 3md3_A 157 --RPLRINWA 164 (166)
T ss_dssp --EECEEEES
T ss_pred --cEEEEEec
Confidence 35566665
No 89
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.06 E-value=0.0024 Score=51.99 Aligned_cols=83 Identities=19% Similarity=0.132 Sum_probs=60.3
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeC
Q 010249 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNE 81 (514)
Q Consensus 2 k~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDs 81 (514)
..+.+..+|.|++||+.+||+++.+.+..+ +.|....++..+... ....-|||.|.+.+++...++. +++.|.+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~g--~~~g~afV~f~~~~~a~~a~~~-~~~~~~g- 84 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQY--GEVVDCVIMKDKTTN--QSRGFGFVKFKDPNCVGTVLAS-RPHTLDG- 84 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTT--SCEEEEEEEECSSSC--CEEEEEEEEESSTTHHHHHHHH-CSEEETT-
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeCCCCC--CcceEEEEEECCHHHHHHHHHh-CCCeECC-
Confidence 356778999999999999999999999875 345554444432221 1224699999999999999998 8887753
Q ss_pred CCCeeeeeEEecc
Q 010249 82 KGVQFKTIVEYAP 94 (514)
Q Consensus 82 KGne~~AiVEfAP 94 (514)
....|++|-
T Consensus 85 ----~~l~V~~a~ 93 (105)
T 2dh8_A 85 ----RNIDPKPCT 93 (105)
T ss_dssp ----EEEBCCCSC
T ss_pred ----EEEEEEEcc
Confidence 245566653
No 90
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.06 E-value=0.005 Score=50.70 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=58.7
Q ss_pred CCCceEEEecCCCC-CCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 5 LDRTKVVVRNLPPA-ITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 5 ~~~~KVVIRrLPP~-LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
....+|.|.+||+. +||+++.+.+..+- .|..... .-.-|||.|.+.+++...++.++|+.|. |
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G--~v~~v~i----------~~g~afV~f~~~~~A~~A~~~l~g~~~~---g 89 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYG--RVAGCSV----------HKGYAFVQYSNERHARAAVLGENGRVLA---G 89 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGS--CCSEEEE----------ETTEEEEECSSSHHHHHHHHHHTTCEET---T
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCC--CeEEEEE----------eCCEEEEEECCHHHHHHHHHHcCCCEEC---C
Confidence 34589999999999 99999999998753 3433333 1256999999999999999999999884 2
Q ss_pred CeeeeeEEeccCC
Q 010249 84 VQFKTIVEYAPSQ 96 (514)
Q Consensus 84 ne~~AiVEfAPYQ 96 (514)
....|++|--.
T Consensus 90 --~~l~V~~a~~~ 100 (110)
T 1wf1_A 90 --QTLDINMAGEP 100 (110)
T ss_dssp --EECCEEESCCC
T ss_pred --eEEEEEECCCC
Confidence 36788887543
No 91
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.05 E-value=0.0032 Score=51.02 Aligned_cols=82 Identities=11% Similarity=0.074 Sum_probs=60.3
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCe-eEeC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHV-FVNE 81 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~v-FvDs 81 (514)
.+.+..+|.|.+||+.+||+++.+.+...+ +.|.....+... .. ..-.-|||.|.+.+++...++.++++. |.+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~-G~v~~v~i~~~~-~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~ 80 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVY-PSCRGGKVVLDQ-TG--VSKGYGFVKFTDELEQKRALTECQGAVGLGSK 80 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHC-TTEEEEEEEECT-TC--CEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhC-CCeEEEEEEECC-CC--CccceEEEEECCHHHHHHHHHHccCCcccCCE
Confidence 456789999999999999999999998722 235444444333 21 123569999999999999999999988 6432
Q ss_pred CCCeeeeeEEec
Q 010249 82 KGVQFKTIVEYA 93 (514)
Q Consensus 82 KGne~~AiVEfA 93 (514)
...|++|
T Consensus 81 -----~l~v~~a 87 (104)
T 2dhg_A 81 -----PVRLSVA 87 (104)
T ss_dssp -----CCCCCBC
T ss_pred -----eEEEEEc
Confidence 4556665
No 92
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.05 E-value=0.0032 Score=52.27 Aligned_cols=79 Identities=19% Similarity=0.205 Sum_probs=59.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
..+..+|.|++||+.+||+++.+.+..+ |.|.....+..+. + .-.-|||.|.+.+++....+.++|+.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~--~--~kg~afV~f~~~~~A~~Ai~~l~g~~~~g--- 96 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQF--GKILDVEIIFNER--G--SKGFGFVTFENSADADRAREKLHGTVVEG--- 96 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGT--CCCSCEEECCBTT--B--CTTEEEEECCCSHHHHHHHHHHTTCEETT---
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhc--CCEEEEEEEECCC--C--CceEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 4567899999999999999999999875 3344433332211 1 23579999999999999999999998743
Q ss_pred CeeeeeEEec
Q 010249 84 VQFKTIVEYA 93 (514)
Q Consensus 84 ne~~AiVEfA 93 (514)
....|++|
T Consensus 97 --~~l~V~~a 104 (109)
T 2err_A 97 --RKIEVNNA 104 (109)
T ss_dssp --EECEEEEC
T ss_pred --EEEEEEEC
Confidence 35667776
No 93
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.02 E-value=0.0034 Score=51.74 Aligned_cols=83 Identities=14% Similarity=0.228 Sum_probs=59.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCc-ce-eEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGG-RY-NWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNE 81 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~g-kv-dwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDs 81 (514)
+.+..+|.|.+||+.+||+++.+.+..+-.- .+ .......|+. ..-|||.|.+.+++...++.++|+.|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~------~g~afV~f~~~~~a~~Ai~~l~g~~~~-- 93 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRM------RGQAFITFPNKEIAWQALHLVNGYKLY-- 93 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSS------CSEEEEECSSHHHHHHHHHHSTTCBCS--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCcc------ceEEEEEECCHHHHHHHHHHhCCCEeC--
Confidence 3466899999999999999999888764210 01 1222333321 247999999999999999999999882
Q ss_pred CCCeeeeeEEeccCCC
Q 010249 82 KGVQFKTIVEYAPSQR 97 (514)
Q Consensus 82 KGne~~AiVEfAPYQK 97 (514)
| ....|+||--.+
T Consensus 94 -g--~~l~v~~a~~~~ 106 (115)
T 2cpx_A 94 -G--KILVIEFGKNKK 106 (115)
T ss_dssp -S--CBCEEEECCCCS
T ss_pred -C--cEEEEEEccCCC
Confidence 3 267888875433
No 94
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.01 E-value=0.0027 Score=50.57 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=57.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCC-CeeEeC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNG-HVFVNE 81 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG-~vFvDs 81 (514)
.+.+..+|.|.+||+.+||+++.+.+..+-. -+...... ...-|||.|.+.+++...++.++| +.|.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-vv~~~~~~---------~~g~afV~f~~~~~A~~A~~~l~g~~~~~-- 71 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKL-PLAGQVLL---------KSGYAFVDYPDQNWAIRAIETLSGKVELH-- 71 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTC-CCSSCEEE---------ETTEEEECCSCHHHHHHHHHHHTTTCEET--
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCC-ceEEEEEc---------CCCEEEEEECCHHHHHHHHHHccCCeeEC--
Confidence 4567789999999999999999998887532 01111111 134699999999999999999999 7763
Q ss_pred CCCeeeeeEEecc
Q 010249 82 KGVQFKTIVEYAP 94 (514)
Q Consensus 82 KGne~~AiVEfAP 94 (514)
| ....|++|-
T Consensus 72 -g--~~l~v~~a~ 81 (93)
T 2cqh_A 72 -G--KIMEVDYSV 81 (93)
T ss_dssp -T--EECEEEECC
T ss_pred -C--EEEEEEEcc
Confidence 2 467788874
No 95
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.01 E-value=0.0016 Score=51.99 Aligned_cols=81 Identities=14% Similarity=0.177 Sum_probs=57.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHH----HHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCee
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFT----EQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVF 78 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~----eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vF 78 (514)
+..+..+|.|++||+.+|++++. +.+..+ |.|....... ......-|||.|.+.+++....+.++|+.|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~--G~i~~v~i~~-----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRF--GQILDILVSR-----SLKMRGQAFVIFKEVSSATNALRSMQGFPF 76 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGG--SCEEEEECCH-----HHHHTTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhC--CCEEEEEEEc-----CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 45677899999999999999998 555543 3344333321 001124699999999999999999999988
Q ss_pred EeCCCCeeeeeEEeccC
Q 010249 79 VNEKGVQFKTIVEYAPS 95 (514)
Q Consensus 79 vDsKGne~~AiVEfAPY 95 (514)
. | ....|+||--
T Consensus 77 ~---g--~~l~v~~a~~ 88 (97)
T 1nu4_A 77 Y---D--KPMRIQYAKT 88 (97)
T ss_dssp T---T--EECEEEECSS
T ss_pred C---C--cEEEEEEccC
Confidence 2 3 4677887743
No 96
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.00 E-value=0.0027 Score=51.40 Aligned_cols=79 Identities=14% Similarity=0.157 Sum_probs=59.3
Q ss_pred CCCCceEEEecCCCCCCHHHHH----HHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeE
Q 010249 4 PLDRTKVVVRNLPPAITQPAFT----EQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFV 79 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~----eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFv 79 (514)
..+..+|.|.+||+.+||+++. +.+..+ +.|.....+..+.. -..|||.|.+.+++..-++.++|+.|.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~--G~v~~v~i~~~~~~-----rg~afV~f~~~~~A~~Ai~~l~g~~~~ 78 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARH--GKVKSVELSPHTDY-----QLKAVVQMENLQDAIGAVNSLHRYKIG 78 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECSCCST-----TCCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhcccc--CcEEEEEEEeCCCC-----CeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4578899999999999999999 666544 34554444433222 236999999999999999999999874
Q ss_pred eCCCCeeeeeEEecc
Q 010249 80 NEKGVQFKTIVEYAP 94 (514)
Q Consensus 80 DsKGne~~AiVEfAP 94 (514)
+ ....|++|-
T Consensus 79 g-----r~l~V~~a~ 88 (96)
T 2dgx_A 79 S-----KKILVSLAT 88 (96)
T ss_dssp T-----EEEEEEECC
T ss_pred C-----eEEEEEEcC
Confidence 2 367788873
No 97
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.00 E-value=0.0025 Score=51.08 Aligned_cols=86 Identities=16% Similarity=0.240 Sum_probs=61.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCC-CCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQK-HQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~K-p~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
..+..+|.|++||+.+||+++.+.+..+ +.|.....+....... .....-|||.|.+.+++...++.++|+.|.+
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 77 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKV--GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG-- 77 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC--
Confidence 3567899999999999999999999875 3454444432222100 0223569999999999999999999998752
Q ss_pred CCeeeeeEEeccCC
Q 010249 83 GVQFKTIVEYAPSQ 96 (514)
Q Consensus 83 Gne~~AiVEfAPYQ 96 (514)
....|++|--.
T Consensus 78 ---~~l~V~~a~~~ 88 (98)
T 2cpf_A 78 ---HKLEVRISERA 88 (98)
T ss_dssp ---EECEEECSSCS
T ss_pred ---eEEEEEEccCC
Confidence 36778877443
No 98
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.97 E-value=0.0053 Score=53.31 Aligned_cols=84 Identities=19% Similarity=0.211 Sum_probs=62.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCC
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGV 84 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGn 84 (514)
....+|.|++||+.+||+++.+.+..+ +.|.....+....+. ..-.-|||.|.+.+++...++.++|+.|.+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~--G~v~~~~i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---- 139 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKY--GRVGDVYIPRDRYTK--ESRGFAFVRFHDKRDAEDAMDAMDGAVLDG---- 139 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHH--SCEEEEECCCCSSCT--TSCCEEEEEESBHHHHHHHHHHSTTEESSS----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeecCCCC--ccceEEEEEECCHHHHHHHHHHhCCCEECC----
Confidence 456899999999999999999999875 345544433322221 123469999999999999999999998742
Q ss_pred eeeeeEEeccCCC
Q 010249 85 QFKTIVEYAPSQR 97 (514)
Q Consensus 85 e~~AiVEfAPYQK 97 (514)
....|+||--++
T Consensus 140 -~~l~v~~a~~~~ 151 (158)
T 2kn4_A 140 -RELRVQMARYGR 151 (158)
T ss_dssp -SEEEEEEECCSS
T ss_pred -eEEEEEECCCCC
Confidence 367888886544
No 99
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=96.97 E-value=0.0041 Score=55.12 Aligned_cols=82 Identities=13% Similarity=0.204 Sum_probs=61.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCC
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGV 84 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGn 84 (514)
.+..+|.|.+||+.+|++++.+.+..+ |.|....++..+.+. ....-|||.|.+.+++...++.++|+.|. |
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g- 141 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDY--GEIKNIHLNLDRRTG--FSKGYALVEYETHKQALAAKEALNGAEIM---G- 141 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTS--SEEEEEEEEESSHHHHHHHHHHHTTCEET---T-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcC--CCEEEEEEEecCCCC--cEeeEEEEEECCHHHHHHHHHHhCCCEEC---C-
Confidence 345689999999999999999999876 345555554433222 12356999999999999999999999883 2
Q ss_pred eeeeeEEeccC
Q 010249 85 QFKTIVEYAPS 95 (514)
Q Consensus 85 e~~AiVEfAPY 95 (514)
....|+||--
T Consensus 142 -~~l~V~~a~~ 151 (165)
T 1rk8_A 142 -QTIQVDWCFV 151 (165)
T ss_dssp -EECEEEESEE
T ss_pred -EEEEEEEecC
Confidence 3677888744
No 100
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.96 E-value=0.0057 Score=50.53 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=56.6
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCee
Q 010249 7 RTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQF 86 (514)
Q Consensus 7 ~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne~ 86 (514)
..+|.|.+||+.+||+++.+.+..+ +.|.....+.-+.+. ..-.-|||.|.+.+++...+ .++|+.|.+ .
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-----~ 94 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAV--GKVRDVRIISDRNSR--RSKGIAYVEFCEIQSVPLAI-GLTGQRLLG-----V 94 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEECCSCCSS--SCCCCEEEEESCGGGHHHHH-HHTTEEETT-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC--CCEeEEEEEecCCCC--ccCcEEEEEeCcHHHHHHHH-HcCCCEeCC-----e
Confidence 3589999999999999999999875 345554443322211 11246999999999999999 999998832 3
Q ss_pred eeeEEec
Q 010249 87 KTIVEYA 93 (514)
Q Consensus 87 ~AiVEfA 93 (514)
...|++|
T Consensus 95 ~l~V~~a 101 (114)
T 2cq4_A 95 PIIVQAS 101 (114)
T ss_dssp EEEEEEH
T ss_pred EEEEEec
Confidence 5677776
No 101
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=96.93 E-value=0.0049 Score=52.95 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=59.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCC
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGV 84 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGn 84 (514)
....+|.|++||+.+|++++.+.+..+ |.|............ ..-.-|||.|.+.++.....+.++|+.|. |
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g- 163 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSF--GPLKAFNLVKDSATG--LSKGYAFCEYVDINVTDQAIAGLNGMQLG---D- 163 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTT--SCEEEEEEEECTTTC--SEEEEEEEEESSTTHHHHHHHHHTTCEET---T-
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhc--CCceEEEEEecCCCC--CcceEEEEEeCCHHHHHHHHHHcCCCEEC---C-
Confidence 346889999999999999999999975 346555554433221 11245999999999999999999999883 2
Q ss_pred eeeeeEEec
Q 010249 85 QFKTIVEYA 93 (514)
Q Consensus 85 e~~AiVEfA 93 (514)
..-.|+||
T Consensus 164 -~~l~V~~A 171 (172)
T 2g4b_A 164 -KKLLVQRA 171 (172)
T ss_dssp -EECEEEEC
T ss_pred -eEEEEEeC
Confidence 35666665
No 102
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=96.93 E-value=0.0036 Score=53.36 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=61.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
+.+..+|.|.+||+.+||+++.+.+..+ +.|.....+..+.+. ....-|||.|.+.+++...++.++|..|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 111 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERY--GPIESVKIVCDRETR--QSRGYGFVKFQSGSSAQQAIAGLNGFNILN--- 111 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHH--SCEEEEEEEEETTTT--EEEEEEEEEESSHHHHHHHHHHTTTEECSS---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCCC--CcceEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 4456899999999999999999999875 345544444332221 123569999999999999999999988753
Q ss_pred CeeeeeEEeccC
Q 010249 84 VQFKTIVEYAPS 95 (514)
Q Consensus 84 ne~~AiVEfAPY 95 (514)
....|++|--
T Consensus 112 --~~l~v~~a~~ 121 (139)
T 1u6f_A 112 --KRLKVALAAS 121 (139)
T ss_dssp --CEEEEEESSC
T ss_pred --eEEEEEECCC
Confidence 2567887743
No 103
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=96.91 E-value=0.0028 Score=55.00 Aligned_cols=87 Identities=18% Similarity=0.181 Sum_probs=63.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCC
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGV 84 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGn 84 (514)
.+..+|.|++||+.+||+++.+.+..+- .|.....+..+...+ .-.-|||.|.+.+++...++.++|+.|.+
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~--~~G~afV~F~~~~~A~~Ai~~l~g~~i~g---- 116 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYG--RVGDVYIPRDRYTKE--SRGFAFVRFHDKRDAEDAMDAMDGAVLDG---- 116 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGS--CCSEEECCCCSSSSS--CCSCCEEECSCHHHHHHHHTTTTTCCSSS----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEecCCCCc--cceEEEEEECCHHHHHHHHHHcCCCEECC----
Confidence 3567899999999999999999998753 344444433222211 12459999999999999999999998753
Q ss_pred eeeeeEEeccCCCCCC
Q 010249 85 QFKTIVEYAPSQRVPK 100 (514)
Q Consensus 85 e~~AiVEfAPYQKvPk 100 (514)
....|++|--++-+.
T Consensus 117 -~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 117 -RELRVQMARYGRPPD 131 (135)
T ss_dssp -SCCEEEECCCCCCCT
T ss_pred -EEEEEEECCCCCCCc
Confidence 266888886655443
No 104
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=96.91 E-value=0.0022 Score=48.98 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=48.7
Q ss_pred eEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEe
Q 010249 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVN 80 (514)
Q Consensus 9 KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvD 80 (514)
||.|.+||+.+|++++.+.+... +.|........+.+. ....-|||.|.+.+++....+ ++|+.|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~a~~-~~~~~~~g 67 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF--GKVDDAMLMFDKTTN--RHRGFGFVTFESEDIVEKVCE-IHFHEINN 67 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT--SCCSEECCCBCSSST--TSCBEEEEECSCHHHHHHHHS-SSCCCSSS
T ss_pred CEEEecCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCC--CcCcEEEEEECCHHHHHHHHH-CCCCEECC
Confidence 68999999999999999999875 334443333322221 123569999999999988887 88888743
No 105
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=96.90 E-value=0.0023 Score=54.71 Aligned_cols=81 Identities=20% Similarity=0.195 Sum_probs=59.5
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeC
Q 010249 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNE 81 (514)
Q Consensus 2 k~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDs 81 (514)
+.|...++|.|++||+.+||+++.+.+...-. .|.+.....++ ...-|||.|.+.+++..-++.++|..|.+.
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~-~v~~v~i~~~~------~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr 95 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSL-ETTFSSVNTRD------FDGTGALEFPSEEILVEALERLNNIEFRGS 95 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTC-CCSEEECSSCS------SSCCEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCC-eeEEEEEEcCC------CCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 35778899999999999999999998887531 34443322221 235699999999999999999999887432
Q ss_pred CCCeeeeeEEecc
Q 010249 82 KGVQFKTIVEYAP 94 (514)
Q Consensus 82 KGne~~AiVEfAP 94 (514)
.-.|++|-
T Consensus 96 -----~i~V~~a~ 103 (111)
T 2jvr_A 96 -----VITVERDD 103 (111)
T ss_dssp -----EEEEEESC
T ss_pred -----EEEEEECC
Confidence 45677663
No 106
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.90 E-value=0.0087 Score=50.31 Aligned_cols=81 Identities=17% Similarity=0.276 Sum_probs=61.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCe-eEeCCC
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHV-FVNEKG 83 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~v-FvDsKG 83 (514)
.+..+|.|++||+.+||+++.+.+.++ |.|.....+.+ -.-|||.|.+.++...-++.+++.. .++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~f--G~V~~v~i~~~--------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G-- 80 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKF--GTICYVMMMPF--------KRQALVEFENIDSAKECVTFAADVPVYIAG-- 80 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTT--SCEEEEEEETT--------TTEEEEEESSHHHHHHHHHHHHHSCCBSSS--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEECC--------CCEEEEEECCHHHHHHHHHHhccCCceECC--
Confidence 456789999999999999999999875 45666555543 2469999999999999998887653 2222
Q ss_pred CeeeeeEEeccCCCCC
Q 010249 84 VQFKTIVEYAPSQRVP 99 (514)
Q Consensus 84 ne~~AiVEfAPYQKvP 99 (514)
.+..|+||-.+.+-
T Consensus 81 --r~l~V~~a~~~~~~ 94 (104)
T 1wex_A 81 --QQAFFNYSTSKRIT 94 (104)
T ss_dssp --SBCEEEECSSSSCC
T ss_pred --EEEEEEEccCcccc
Confidence 25679998766543
No 107
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.87 E-value=0.0031 Score=50.81 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=56.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCC
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGV 84 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGn 84 (514)
....+|.|.+||+.+||+++.+.+..+-. |. ...+.+ ....-|||.|.+.+++...++.++|..|.+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~--v~-~~~~~~------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--- 84 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGS--VP-LRLTWQ------GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD--- 84 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTC--CC-SEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCCSSSS---
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCC--EE-EEEEcC------CCCcEEEEEECCHHHHHHHHHHhCCCEECCc---
Confidence 34689999999999999999998887532 22 122222 1224699999999999999999999988532
Q ss_pred eeeeeEEec
Q 010249 85 QFKTIVEYA 93 (514)
Q Consensus 85 e~~AiVEfA 93 (514)
...|++|
T Consensus 85 --~l~V~~a 91 (97)
T 2e5j_A 85 --TLRVALA 91 (97)
T ss_dssp --CCEEEEC
T ss_pred --EEEEEEc
Confidence 4667776
No 108
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=96.85 E-value=0.004 Score=56.71 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=62.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
+.+.++|.|.+||+.+||+++.+.+..+ +.|.....+... .. ..-.-|||.|.+.+++...++.++|+.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~-~g--~~kG~afV~F~~~~~A~~Ai~~lng~~l~G--- 156 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEF--GTLKKAAVDYDR-SG--RSLGTADVHFERRADALKAMKQYKGVPLDG--- 156 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHT--SCCSEEEECCCT-TS--SCSCCEEEEESCHHHHHHHHHHSTTCBCSS---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECC-CC--CEeeEEEEEeCCHHHHHHHHHHhCCCEECC---
Confidence 4467899999999999999999998875 234443333222 11 123569999999999999999999998743
Q ss_pred CeeeeeEEeccCCCC
Q 010249 84 VQFKTIVEYAPSQRV 98 (514)
Q Consensus 84 ne~~AiVEfAPYQKv 98 (514)
....|+||.-...
T Consensus 157 --r~l~V~~a~~~~~ 169 (177)
T 2f3j_A 157 --RPMDIQLVASQID 169 (177)
T ss_dssp --SBCEEEEESSGGG
T ss_pred --EEEEEEEecCCCC
Confidence 3567888865543
No 109
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=96.85 E-value=0.0039 Score=49.57 Aligned_cols=80 Identities=13% Similarity=0.071 Sum_probs=54.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCc-ceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGG-RYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~g-kvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
+.+..+|.|++||+.+||+++.+.+..+-.- .+...... . ......-|||.|.+.+++...++.++++.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~---~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-- 84 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN---E--KGMPTGEAMVAFESRDEATAAVIDLNDRPIGS-- 84 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEEC---T--TSCEEEEEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeC---C--CCCEeeEEEEEECCHHHHHHHHHHhCCCeECC--
Confidence 3456899999999999999999998875211 12222211 0 11123569999999999999999999998843
Q ss_pred CCeeeeeEEec
Q 010249 83 GVQFKTIVEYA 93 (514)
Q Consensus 83 Gne~~AiVEfA 93 (514)
....|++|
T Consensus 85 ---r~l~v~~a 92 (95)
T 2ek1_A 85 ---RKVKLSGP 92 (95)
T ss_dssp ---EECEEECC
T ss_pred ---cEEEEEec
Confidence 25566665
No 110
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=96.85 E-value=0.0022 Score=50.06 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=58.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCe
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQ 85 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne 85 (514)
...+|.|++||+.+||+++.+.+..+ |.|.....+...... .....-|||.|.+.+++....+.++|+.|.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----- 74 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTY--GKIKMIDMPVERMHP-HLSKGYAYVEFENPDEAEKALKHMDGGQIDG----- 74 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCEETTEE-EEECSEEEEEESSHHHHHHHHHHHTTCEETT-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEeCCCCC-CCCCcEEEEEEecHHHHHHHHHHcCCCeECC-----
Confidence 45789999999999999999999875 345443332221110 1123579999999999999999999999843
Q ss_pred eeeeEEec
Q 010249 86 FKTIVEYA 93 (514)
Q Consensus 86 ~~AiVEfA 93 (514)
....|++|
T Consensus 75 ~~l~v~~a 82 (88)
T 4a8x_A 75 QEITATAV 82 (88)
T ss_dssp EECEEEEE
T ss_pred eEEEEEEC
Confidence 25677776
No 111
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.84 E-value=0.0073 Score=49.24 Aligned_cols=90 Identities=10% Similarity=0.117 Sum_probs=62.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhC--CCeeEe
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFN--GHVFVN 80 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fd--G~vFvD 80 (514)
...+..+|.|.+||+.+||+++.+.+..+-.+ |.....+.-+... ...-.-|||.|.+.+++...++.++ ++.|.+
T Consensus 4 ~s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~-v~~v~i~~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g 81 (109)
T 2dis_A 4 GSSGNCRLFIGGIPKMKKREEILEEIAKVTEG-VLDVIVYASAADK-MKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 81 (109)
T ss_dssp CCCCSEEEEEECCCTTSCHHHHHHHHHHHSTT-EEEEECCSSSCTT-TTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred cccCCCEEEEeCCCCcCCHHHHHHHHHHhcCC-ceEEEEEccCCCC-CCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence 34567899999999999999999999876321 4444443122111 1223579999999999999999996 455533
Q ss_pred CCCCeeeeeEEeccCCCCC
Q 010249 81 EKGVQFKTIVEYAPSQRVP 99 (514)
Q Consensus 81 sKGne~~AiVEfAPYQKvP 99 (514)
....|+||--+..+
T Consensus 82 -----~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 82 -----HQIAVDWAEPEIDV 95 (109)
T ss_dssp -----BCCEEEESCSSCST
T ss_pred -----CeEEEEEcCCCCCc
Confidence 25688888655443
No 112
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.82 E-value=0.0046 Score=55.04 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=53.1
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEe
Q 010249 7 RTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVN 80 (514)
Q Consensus 7 ~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvD 80 (514)
..+|.|++||+.+||+++.+.+..+ +.|....++.-..+. ....-|||.|.+.+++...++.++|..|.+
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 97 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPF--GPIKSIDMSWDSVTM--KHKGFAFVEYEVPEAAQLALEQMNSVMLGG 97 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEECCC-CC---CCCSEEEEEESSHHHHHHHHHHHSSCCCC-
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhC--CCEEEEEEeecCCCC--ccCceEEEEeCCHHHHHHHHHHccCCeeCC
Confidence 4689999999999999999999876 345554554322111 123569999999999999999999988743
No 113
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.81 E-value=0.0035 Score=52.31 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=56.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcce-eEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRY-NWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkv-dwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
+.+..+|.|++||+.+||+++.+.+..+ +.+ .....+.-+ ..+ .-.-|||.|.+.+++...++. +++.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--g~v~~~v~i~~d~-~g~--~~G~afV~F~~~~~a~~Al~~-~~~~~~g-- 83 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGI--PVDENAVHVLVDN-NGQ--GLGQALVQFKNEDDARKSERL-HRKKLNG-- 83 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTS--CCCSTTEEECCCT-TSS--CSSCEEEECSSHHHHHHHGGG-CSEEETT--
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhC--CCcCCeEEEEECC-CCC--cceEEEEEECCHHHHHHHHHh-CCCccCC--
Confidence 5677899999999999999999999875 344 222333222 111 124599999999999998887 8876632
Q ss_pred CCeeeeeEEecc
Q 010249 83 GVQFKTIVEYAP 94 (514)
Q Consensus 83 Gne~~AiVEfAP 94 (514)
....|++|-
T Consensus 84 ---r~i~v~~a~ 92 (114)
T 2cpy_A 84 ---REAFVHVVT 92 (114)
T ss_dssp ---EEEEEEEEC
T ss_pred ---eEEEEEECC
Confidence 245677664
No 114
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.81 E-value=0.0077 Score=53.60 Aligned_cols=84 Identities=10% Similarity=0.136 Sum_probs=63.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCe
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQ 85 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne 85 (514)
...+|.|++||+.+|++++.+.+..+ +.|....++......+ ...-|||.|.+.+++....+.++|+.|-+
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~g~--~~g~afV~F~~~~~A~~A~~~l~g~~~~g----- 194 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAF--GKIKSATLARDPTTGK--HKGYGFIEYEKAQSSQDAVSSMNLFDLGG----- 194 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTS--SCEEEEEEEECTTTCC--EEEEEEEEESSHHHHHHHHHHHTTCBCSS-----
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhcc--CCeeEEEEEecCCCCC--cCceEEEEecCHHHHHHHHHHccCCEeCC-----
Confidence 45789999999999999999999875 4566666655433221 23459999999999999999999998732
Q ss_pred eeeeEEeccCCCC
Q 010249 86 FKTIVEYAPSQRV 98 (514)
Q Consensus 86 ~~AiVEfAPYQKv 98 (514)
....|+||--...
T Consensus 195 ~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 195 QYLRVGKAVTPPM 207 (216)
T ss_dssp SBCEEEECSSCSS
T ss_pred cEEEEEEecCCCC
Confidence 2567888765433
No 115
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=96.78 E-value=0.0056 Score=48.01 Aligned_cols=71 Identities=14% Similarity=0.161 Sum_probs=51.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCee
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVF 78 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vF 78 (514)
.+.+..+|.|++||+.+||+++.+.+..+ +.|.....+..+.+. ....-|||.|.+.+++....+. +++.|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~-~~~~~ 77 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKF--GEVVDCTIKMDPNTG--RSRGFGFILFKDAASVEKVLDQ-KEHRL 77 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTTC--CEEEEEEEEESSTHHHHHHHHS-SCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEeecCCCC--ccccEEEEEECCHHHHHHHHHh-CCCEE
Confidence 45678899999999999999999999875 345555554333221 1234599999999999988865 55543
No 116
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.77 E-value=0.002 Score=51.44 Aligned_cols=77 Identities=22% Similarity=0.225 Sum_probs=57.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
...+..+|.|++||+.+|++++.+.+..+ +.|... .. ....-.-|||.|.+.+++....+.++|+.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~--g~v~~~-----~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--- 79 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDA--LEIRLV-----SQ--DGKSKGIAYIEFKSEADAEKNLEEKQGAEID--- 79 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSE--EEECCE-----EE--TTEEEEEEEEEESSHHHHHHHHHHTTEEEET---
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhC--CcEEEe-----CC--CCCcceEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 34567899999999999999999998875 333322 11 1112346999999999999999999998873
Q ss_pred CCeeeeeEEec
Q 010249 83 GVQFKTIVEYA 93 (514)
Q Consensus 83 Gne~~AiVEfA 93 (514)
| ....|++|
T Consensus 80 g--~~l~v~~a 88 (96)
T 1fjc_A 80 G--RSVSLYYT 88 (96)
T ss_dssp T--EEEEEEEC
T ss_pred C--eEEEEEEc
Confidence 2 24677776
No 117
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.75 E-value=0.0055 Score=53.14 Aligned_cols=77 Identities=19% Similarity=0.227 Sum_probs=60.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
..+..+|.|.+||+.+||+++.+.+..+ +.|.....+.. .-.-|||.|.+.+++....+.++|+.|. |
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~---g 137 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYY--GPLRSVWVARN-------PPGFAFVEFEDPRDAADAVRELDGRTLC---G 137 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHH--SCEEEEEECSS-------SCSEEEEEESSHHHHHHHHHHHSSSCSS---S
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhh--CCEEEEEEeeC-------CCcEEEEEECCHHHHHHHHHHcCCCEEC---C
Confidence 4567899999999999999999999875 34555444332 1357999999999999999999999873 2
Q ss_pred CeeeeeEEecc
Q 010249 84 VQFKTIVEYAP 94 (514)
Q Consensus 84 ne~~AiVEfAP 94 (514)
....|+||-
T Consensus 138 --~~l~v~~a~ 146 (150)
T 2i2y_A 138 --CRVRVELSN 146 (150)
T ss_dssp --SCCEEEECC
T ss_pred --eEEEEEEcC
Confidence 256777763
No 118
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=96.68 E-value=0.0086 Score=52.58 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=60.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCC
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGV 84 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGn 84 (514)
.+..+|.|++||+.+|++++.+.+..+ +.|............ ....-|||.|.+.++.....+.++|+.|. |
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~~~~~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g- 183 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSF--GPLKAFNLVKDSATG--LSKGYAFCEYVDINVTDQAIAGLNGMQLG---D- 183 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTB--SCEEEEEEEECTTTC--SEEEEEEEEESSSSHHHHHHHHHTTCEET---T-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc--CCccEEEEeecCCCC--CcceEEEEEECCHHHHHHHHHHcCCCEEC---C-
Confidence 567899999999999999999999875 345554444332211 12356999999999999999999999882 2
Q ss_pred eeeeeEEec
Q 010249 85 QFKTIVEYA 93 (514)
Q Consensus 85 e~~AiVEfA 93 (514)
....|+||
T Consensus 184 -~~l~v~~a 191 (198)
T 2yh0_A 184 -KKLLVQRA 191 (198)
T ss_dssp -EECEEEES
T ss_pred -EEEEEEEC
Confidence 35677776
No 119
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.68 E-value=0.01 Score=47.48 Aligned_cols=75 Identities=13% Similarity=0.062 Sum_probs=54.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCC
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGV 84 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGn 84 (514)
....+|.|.+||+.+||+++.+.+..+ +.|... +.-+...+ -|||.|.+.+++...++ ++|+.|.+
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~v~~v--~~~~~~g~-----~afV~f~~~~~a~~ai~-l~g~~~~g---- 71 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAF--GPVASV--VMDKDKGV-----FAIVEMGDVGAREAVLS-QSQHSLGG---- 71 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGT--SCEEEE--EECSSSCC-----EEEEEESSHHHHHHHHT-CSCCEETT----
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEE--EEcCCCCc-----EEEEEECCHHHHHHHHh-cCCeEECC----
Confidence 345699999999999999999999875 334432 11111111 89999999999999999 99998853
Q ss_pred eeeeeEEecc
Q 010249 85 QFKTIVEYAP 94 (514)
Q Consensus 85 e~~AiVEfAP 94 (514)
....|++|.
T Consensus 72 -~~l~V~~a~ 80 (94)
T 2e5g_A 72 -HRLRVRPRE 80 (94)
T ss_dssp -EECCCBCSC
T ss_pred -EEEEEEECC
Confidence 245566554
No 120
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.68 E-value=0.012 Score=49.27 Aligned_cols=81 Identities=12% Similarity=0.262 Sum_probs=60.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCC--eeEeC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGH--VFVNE 81 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~--vFvDs 81 (514)
..+..+|.|++||+.+||+++.+.+.++ |.|.....+.+ -.-|||.|.+.++....++.+++. .| +
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~f--G~v~~v~i~~~--------kg~aFVef~~~~~A~~Ai~~l~~~~~~~-~- 79 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPF--GKVTNILMLKG--------KNQAFLELATEEAAITMVNYYSAVTPHL-R- 79 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTT--SCEEEEEEETT--------TTEEEEEESSHHHHHHHHHHHHHSCCEE-T-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEECC--------CCEEEEEECCHHHHHHHHHHhccCCceE-C-
Confidence 3466789999999999999999998875 45655555543 357999999999999988887643 33 2
Q ss_pred CCCeeeeeEEeccCCCCC
Q 010249 82 KGVQFKTIVEYAPSQRVP 99 (514)
Q Consensus 82 KGne~~AiVEfAPYQKvP 99 (514)
| .+..|+||-.+.+-
T Consensus 80 -G--r~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 80 -N--QPIYIQYSNHKELK 94 (101)
T ss_dssp -T--EECEEEECSCSSCC
T ss_pred -C--cEEEEEEcCcccCc
Confidence 2 36789999766554
No 121
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=96.64 E-value=0.0089 Score=56.10 Aligned_cols=75 Identities=12% Similarity=0.213 Sum_probs=60.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCe
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQ 85 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne 85 (514)
+...|.|++||+.+|++++.+.+..+ +.|....+++++ ..-|||.|.+.++....++.++|+.|.+ |
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~--G~i~~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~~--g-- 272 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQF--PGFKEVRLVPGR-------HDIAFVEFDNEVQAGAARDALQGFKITQ--N-- 272 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhc--CCeEEEEEecCC-------CcEEEEEeCCHHHHHHHHHHcCCcEeCC--C--
Confidence 56789999999999999999999875 456666666544 2589999999999999999999988873 2
Q ss_pred eeeeEEec
Q 010249 86 FKTIVEYA 93 (514)
Q Consensus 86 ~~AiVEfA 93 (514)
..-.|+||
T Consensus 273 ~~l~v~~a 280 (282)
T 3pgw_A 273 NAMKISFA 280 (282)
T ss_pred CEEEEEEe
Confidence 25567765
No 122
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=96.63 E-value=0.0057 Score=53.38 Aligned_cols=80 Identities=18% Similarity=0.319 Sum_probs=55.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccC--CcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAF--GGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~--~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
.+..+|.|++||+.+|++++.+.|..+| -|.|....... . ...-..|||.|.+.++....++.++|+.|.+.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~--~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr- 100 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---S--DDNSGKAYIVFATQESAQAFVEAFQGYPFQGN- 100 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---C--CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---C--CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC-
Confidence 4568999999999999998765443333 13343322211 1 11134699999999999999999999988543
Q ss_pred CCeeeeeEEecc
Q 010249 83 GVQFKTIVEYAP 94 (514)
Q Consensus 83 Gne~~AiVEfAP 94 (514)
+-.|+||-
T Consensus 101 ----~l~V~~a~ 108 (127)
T 2a3j_A 101 ----PLVITFSE 108 (127)
T ss_dssp ----CCEEEECC
T ss_pred ----EEEEEEcc
Confidence 56788774
No 123
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.62 E-value=0.0065 Score=50.46 Aligned_cols=84 Identities=19% Similarity=0.264 Sum_probs=60.7
Q ss_pred CCCCceEEEecCCCCCCHHHHH---HHhcccCCcceeEEEeecCCCCCC-CCcceEEEEEcCChhhHHHHHHHhCCCeeE
Q 010249 4 PLDRTKVVVRNLPPAITQPAFT---EQIDGAFGGRYNWVSFRQGKTSQK-HQSCARAYLDFKKPEDVLEFAEFFNGHVFV 79 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~---eqL~p~~~gkvdwfyFVpGk~S~K-p~~ySRAYI~Fkn~Edl~~F~~~fdG~vFv 79 (514)
..+..+|.|.+||+.+||++++ +.+..+ +.|.....+......+ .....-|||.|.+.+++...++.++|+.|.
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~--G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKF--GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTT--SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhcc--CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 3467899999999999999998 776654 3455544443332111 122367999999999999999999999873
Q ss_pred eCCCCeeeeeEEecc
Q 010249 80 NEKGVQFKTIVEYAP 94 (514)
Q Consensus 80 DsKGne~~AiVEfAP 94 (514)
| ....|+||-
T Consensus 90 ---g--r~l~V~~a~ 99 (111)
T 2cpi_A 90 ---G--RTLKASLGT 99 (111)
T ss_dssp ---T--EEEEEESCC
T ss_pred ---C--EEEEEEecc
Confidence 2 256788774
No 124
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=96.61 E-value=0.011 Score=54.45 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=62.8
Q ss_pred CCCCceEEEecCCC-CCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 4 PLDRTKVVVRNLPP-AITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 4 p~~~~KVVIRrLPP-~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
+.+..+|.|++||+ .+||+++.+.+..+ |.|....++..+ ..-|||.|.+.+++....+.++|..|.+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~--G~i~~v~i~~~~-------~g~afV~F~~~~~A~~Ai~~l~g~~~~g-- 99 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVY--GDVQRVKILFNK-------KENALVQMADGNQAQLAMSHLNGHKLHG-- 99 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHH--TCEEEEEECCTT-------SCCEEEEESCHHHHHHHHHHHTTCBCSS--
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhC--CCeEEEEEEECC-------CCEEEEEECCHHHHHHHHHHhCCCeECC--
Confidence 45678999999999 99999999999875 345555554322 2349999999999999999999998833
Q ss_pred CCeeeeeEEeccCCCC
Q 010249 83 GVQFKTIVEYAPSQRV 98 (514)
Q Consensus 83 Gne~~AiVEfAPYQKv 98 (514)
....|++|..+..
T Consensus 100 ---~~l~v~~a~~~~~ 112 (229)
T 2adc_A 100 ---KPIRITLSKHQNV 112 (229)
T ss_dssp ---SBCEEECCSCCCC
T ss_pred ---eEEEEEEecCccc
Confidence 3667888865543
No 125
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.60 E-value=0.01 Score=50.94 Aligned_cols=83 Identities=12% Similarity=0.271 Sum_probs=63.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCC--CeeEe
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNG--HVFVN 80 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG--~vFvD 80 (514)
.+.+..+|-|++||+.+||+++.+.+.++ |.|.....+.+ -.-|||.|.+.++...-++.+++ ..| +
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~f--G~V~~v~i~~~--------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l-~ 80 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPF--GKVTNLLMLKG--------KNQAFIEMNTEEAANTMVNYYTSVTPVL-R 80 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHH--CCEEEEEEETT--------TTEEEEEESSHHHHHHHHHHHTTSCCEE-T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEcC--------CCEEEEEECCHHHHHHHHHHhccCCceE-C
Confidence 46788999999999999999999999886 45666565554 25799999999999999998875 344 2
Q ss_pred CCCCeeeeeEEeccCCCCCC
Q 010249 81 EKGVQFKTIVEYAPSQRVPK 100 (514)
Q Consensus 81 sKGne~~AiVEfAPYQKvPk 100 (514)
| .+..|+||-.+.+..
T Consensus 81 --G--r~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 81 --G--QPIYIQFSNHKELKT 96 (105)
T ss_dssp --T--EECCBCCCSSSSCCC
T ss_pred --C--EEEEEEEcCCCCCCc
Confidence 2 266788886655543
No 126
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.60 E-value=0.0075 Score=49.97 Aligned_cols=79 Identities=13% Similarity=0.076 Sum_probs=57.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCe
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQ 85 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne 85 (514)
+..+|.|.+||+.+||+++.+.+..+ +.|.....+..+.+.+ ...-|||.|.+.+++...++. +++.|.+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g~--~~g~afV~f~~~~~a~~Ai~~-~~~~~~g----- 95 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQW--GKLTDCVVMRDPASKR--SRGFGFVTFSSMAEVDAAMAA-RPHSIDG----- 95 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSS--CCCSEEEEECCTTTSS--CCSEEEEECSSHHHHHHHHTS-CSEEETT-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECCCCCC--cCceEEEEeCCHHHHHHHHHh-CCcEECC-----
Confidence 34789999999999999999999875 3454444443322221 225699999999999999988 8877632
Q ss_pred eeeeEEecc
Q 010249 86 FKTIVEYAP 94 (514)
Q Consensus 86 ~~AiVEfAP 94 (514)
....|++|-
T Consensus 96 ~~l~V~~a~ 104 (116)
T 1x4b_A 96 RVVEPKRAV 104 (116)
T ss_dssp EEEEEECCS
T ss_pred EEEEEEECC
Confidence 366777764
No 127
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=96.58 E-value=0.0047 Score=49.25 Aligned_cols=72 Identities=14% Similarity=0.096 Sum_probs=50.1
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEe
Q 010249 7 RTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVN 80 (514)
Q Consensus 7 ~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvD 80 (514)
+.+|.|++||+.+||+++.+.+..+-...+.....+..+.+. ..-.-|||.|.+.+++...++.++|+.|.+
T Consensus 1 r~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g--~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g 72 (90)
T 3p5t_L 1 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANG--QSKGFALVGVGSEASSKKLMDLLPKRELHG 72 (90)
T ss_dssp ---CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTC--CEEEEEEECC-CHHHHHHHHHHGGGSCSSS
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCC--ccCcEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 468999999999999999999987531134444444332221 123569999999999999999999998753
No 128
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=96.55 E-value=0.0085 Score=51.87 Aligned_cols=75 Identities=20% Similarity=0.192 Sum_probs=57.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCC
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGV 84 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGn 84 (514)
.+..+|.|++||+.+|++++.+.+... +.|.. + .. ....-.-|||.|.+.+++....+.++|+.|.+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~--g~v~~---~--~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---- 163 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDA--LEIRL---V--SQ--DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG---- 163 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTC--SEEEE---E--CS--SSSCCSEEEEECSSHHHHHHHHHHHTEEEETT----
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhc--CeEEE---e--cC--CCCCceEEEEEECCHHHHHHHHHHhCCCEECC----
Confidence 356899999999999999999999874 34543 3 11 11223469999999999999999999988742
Q ss_pred eeeeeEEec
Q 010249 85 QFKTIVEYA 93 (514)
Q Consensus 85 e~~AiVEfA 93 (514)
..-.|+||
T Consensus 164 -~~i~v~~a 171 (175)
T 1fje_B 164 -RSVSLYYT 171 (175)
T ss_dssp -EEEEEEEC
T ss_pred -eEEEEEec
Confidence 35678777
No 129
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.0084 Score=50.72 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=58.7
Q ss_pred eEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCeeee
Q 010249 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKT 88 (514)
Q Consensus 9 KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne~~A 88 (514)
+|.|++||+.+||+++.+.+..+ |.|....++..+.. ....-|||.|.+.+++....+.++|..|.+ ...
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-----~~i 71 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVG--GPIANIKIMIDKNN---KNVNYAFVEYHQSHDANIALQTLNGKQIEN-----NIV 71 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGG--SCEEEEEEECCCC----CCEEEEEEEESSHHHHHHHHHHHTTCEETT-----EEC
T ss_pred EEEECCCCCcCCHHHHHHHHHhc--CCeEEEEEEECCCC---CCCCEEEEEeCCHHHHHHHHHHcCCCccCC-----Cee
Confidence 68999999999999999999875 34555555443321 123569999999999999999999998832 356
Q ss_pred eEEeccCC
Q 010249 89 IVEYAPSQ 96 (514)
Q Consensus 89 iVEfAPYQ 96 (514)
.|+++.-.
T Consensus 72 ~v~~~~~~ 79 (166)
T 3md3_A 72 KINWAFQS 79 (166)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 67776443
No 130
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=96.51 E-value=0.018 Score=49.02 Aligned_cols=81 Identities=16% Similarity=0.291 Sum_probs=63.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCee-EeCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVF-VNEK 82 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vF-vDsK 82 (514)
..+...|-|++||+..||+++.+.+.+. |.|.....++.+ .-|+|.|.+.++...-.+.+++..+ ++.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~f--G~V~~v~i~~~k--------g~AFVef~~~~~A~~Av~~ln~~~~~i~G- 86 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEF--GPISYVVVMPKK--------RQALVEFEDVLGACNAVNYAADNQIYIAG- 86 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEETTT--------TEEEEEESSHHHHHHHHHHHHHSCEEETT-
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcc--CCEEEEEEEcCC--------CEEEEEECCHHHHHHHHHHhcCCCceeCC-
Confidence 3466789999999999999999999986 457666665422 4799999999999999999998753 333
Q ss_pred CCeeeeeEEeccCCCC
Q 010249 83 GVQFKTIVEYAPSQRV 98 (514)
Q Consensus 83 Gne~~AiVEfAPYQKv 98 (514)
.+..|+||=.+.+
T Consensus 87 ---r~i~V~~S~~k~l 99 (100)
T 3r27_A 87 ---HPAFVNYSTSQKI 99 (100)
T ss_dssp ---EEEEEEECSCSCC
T ss_pred ---cEEEEEecccccc
Confidence 2678898865543
No 131
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=96.51 E-value=0.0092 Score=61.86 Aligned_cols=81 Identities=12% Similarity=0.192 Sum_probs=60.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCe
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQ 85 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne 85 (514)
+..+|.|.+||+.+|+++|.+.|..+ |.|....++..+.+.+ .-.-|||.|.+.+++...++.++|+.|.+
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg~--~kG~aFV~F~~~e~A~~Ai~~lng~~i~g----- 171 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVY--GPIKRIHMVYSKRSGK--PRGYAFIEYEHERDMHSAYKHADGKKIDG----- 171 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHc--CCeeEEEeeccCCCCC--ccceEEEeeccHHHHHHHHHHcCCCEECC-----
Confidence 45799999999999999999999875 3455444443322221 23569999999999999999999998832
Q ss_pred eeeeEEeccC
Q 010249 86 FKTIVEYAPS 95 (514)
Q Consensus 86 ~~AiVEfAPY 95 (514)
....|+||--
T Consensus 172 r~i~V~~a~~ 181 (437)
T 3pgw_S 172 RRVLVDVERG 181 (437)
T ss_pred EEEEEEEeCC
Confidence 3677888763
No 132
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=96.51 E-value=0.0068 Score=47.23 Aligned_cols=67 Identities=24% Similarity=0.397 Sum_probs=51.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccC--Cc-------ceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCC
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAF--GG-------RYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNG 75 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~--~g-------kvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG 75 (514)
.+..+|.|.+||+.+|++++.+.+.... .+ .+........ -.-|||.|.+.+++.... .++|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--------kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--------KNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--------SSEEEEEESSHHHHHHHG-GGTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--------CcEEEEEcCCHHHHHHHH-hcCC
Confidence 4568999999999999999999888651 11 3444333321 357999999999999999 9999
Q ss_pred CeeEe
Q 010249 76 HVFVN 80 (514)
Q Consensus 76 ~vFvD 80 (514)
+.|.+
T Consensus 75 ~~~~g 79 (87)
T 2hzc_A 75 IIFQG 79 (87)
T ss_dssp CEETT
T ss_pred CEECC
Confidence 98743
No 133
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=96.49 E-value=0.0058 Score=49.75 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=51.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCC-CCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEe
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGK-TSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVN 80 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk-~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvD 80 (514)
+....+|.|++||+.+||+++.+.+..+ | |.....+... .+.+ .-.-|||.|.+.+++...+ .++|+.|.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G-i~~v~i~~~~~~~g~--~~g~afV~f~~~~~a~~Ai-~l~g~~~~g 87 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGL--N-ISAVRLPREPSNPER--LKGFGYAEFEDLDSLLSAL-SLNEESLGN 87 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSS--C-EEEEECSCCTTTTCC--CCSCEEEEECCHHHHHHHH-HTTTCCBTT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc--C-CeEEEEEecCCcCCc--cCeEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 4567899999999999999999999875 4 6555544332 1111 1246999999999999999 899998743
No 134
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=96.46 E-value=0.0087 Score=52.46 Aligned_cols=81 Identities=12% Similarity=0.095 Sum_probs=57.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
+.+..+|.|++||+.+||+++.+.+..+ |.|.....+.-..+. ....-|||.|.+.+++...++. +++.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~-~~~~~~g--- 81 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQW--GTLTDCVVMRDPNTK--RSRGFGFVTYATVEEVDAAMNA-RPHKVDG--- 81 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTC--CEEEEEEEEESSHHHHHHHHHT-CSCEETT---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEEcCCCC--CccceEEEEeCCHHHHHHHHhc-CCCEECC---
Confidence 5567899999999999999999999976 345554444332211 1234699999999999999877 6665522
Q ss_pred CeeeeeEEecc
Q 010249 84 VQFKTIVEYAP 94 (514)
Q Consensus 84 ne~~AiVEfAP 94 (514)
....|+++.
T Consensus 82 --~~l~v~~~~ 90 (196)
T 1l3k_A 82 --RVVEPKRAV 90 (196)
T ss_dssp --EECEEEECC
T ss_pred --EEeeeeccc
Confidence 244566654
No 135
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=96.45 E-value=0.019 Score=49.28 Aligned_cols=81 Identities=15% Similarity=0.241 Sum_probs=60.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCc-c------eeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGG-R------YNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGH 76 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~g-k------vdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~ 76 (514)
..+..+|.|++||+.+|++++.+.+..+-.- . ++......|+ ...-|||.|.+.+++...++.++|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~------~~g~afV~f~~~~~A~~Ai~~lng~ 115 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGR------MKGQAFIGLPNEKAAAKALKEANGY 115 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETT------TEEEEEEECSSHHHHHHHHHHHTTB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCC------cccEEEEEeCCHHHHHHHHHHhCCC
Confidence 4567899999999999999999999875311 1 1222222222 2467999999999999999999999
Q ss_pred eeEeCCCCeeeeeEEeccC
Q 010249 77 VFVNEKGVQFKTIVEYAPS 95 (514)
Q Consensus 77 vFvDsKGne~~AiVEfAPY 95 (514)
.|. | ....|+||-.
T Consensus 116 ~~~---g--~~l~V~~a~~ 129 (143)
T 3egn_A 116 VLF---G--KPMVVQFARS 129 (143)
T ss_dssp EET---T--EECEEEECCC
T ss_pred EeC---C--cEEEEEECCC
Confidence 983 2 3678888843
No 136
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.44 E-value=0.01 Score=51.85 Aligned_cols=81 Identities=11% Similarity=0.253 Sum_probs=60.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCC-eeEeCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGH-VFVNEK 82 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~-vFvDsK 82 (514)
..+..+|.|++||+.+||+++.+.+.++ |.|.....+.+ -.-|||.|.+.++....++.+++. ..++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~f--G~V~~v~i~~~--------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~-- 95 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPF--GKVTNLLMLKG--------KNQAFIEMNTEEAANTMVNYYTSVTPVLR-- 95 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTT--SCCCEEEEEGG--------GTEEEEECSCHHHHHHHHHHHHHHCCCBT--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhccCCceEC--
Confidence 4467889999999999999999999876 34655555543 256999999999999998888753 1222
Q ss_pred CCeeeeeEEeccCCCC
Q 010249 83 GVQFKTIVEYAPSQRV 98 (514)
Q Consensus 83 Gne~~AiVEfAPYQKv 98 (514)
| .+..|+||-.+.+
T Consensus 96 G--r~l~V~~a~~k~~ 109 (119)
T 2ad9_A 96 G--QPIYIQFSNHKEL 109 (119)
T ss_dssp T--BCCEEEECSSSSC
T ss_pred C--eEEEEEEccCCCC
Confidence 2 2568899865544
No 137
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.43 E-value=0.015 Score=50.65 Aligned_cols=80 Identities=11% Similarity=0.196 Sum_probs=62.2
Q ss_pred CCCceEEEec--CCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 5 LDRTKVVVRN--LPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 5 ~~~~KVVIRr--LPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
.+..+|.|++ ||..+||+++.+.+..+- .|.......+ -.-|||.|.+.++...-++.++|+.|.+.-
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG--~v~~v~i~~~--------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~l 92 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCG--LVDALLMPPN--------KPYSFARYRTTEESKRAYVTLNGKEVVDDL 92 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHS--CEEEEECCTT--------CSCEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcC--CeEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCEEcccc
Confidence 3567899955 999999999999998863 4655444433 247999999999999999999999985555
Q ss_pred CCeeeeeEEecc
Q 010249 83 GVQFKTIVEYAP 94 (514)
Q Consensus 83 Gne~~AiVEfAP 94 (514)
|.-.+..|.||-
T Consensus 93 g~g~~l~v~~a~ 104 (114)
T 2cq2_A 93 GQKITLYLNFVE 104 (114)
T ss_dssp SCEEECEEEEES
T ss_pred CCCcEEEEEecc
Confidence 555667788764
No 138
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=96.38 E-value=0.018 Score=51.05 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=59.6
Q ss_pred CceEEEecCCC-CCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCe
Q 010249 7 RTKVVVRNLPP-AITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQ 85 (514)
Q Consensus 7 ~~KVVIRrLPP-~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne 85 (514)
..+|.|++||+ .+||+++.+.+..+ |.|....++..+ ..-|||.|.+.+++....+.++|..|.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~--G~i~~v~i~~~~-------~g~afV~f~~~~~a~~A~~~l~~~~~~g----- 68 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVY--GDVQRVKILFNK-------KENALVQMADGNQAQLAMSHLNGHKLHG----- 68 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTT--CCCSEEECSTTC-------SSCCEEECTTTHHHHHHHHHHTTCCCSS-----
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhc--CCEEEEEEEeCC-------CCEEEEEECCHHHHHHHHHHhCCCeecC-----
Confidence 57899999999 99999999999875 335544444322 2359999999999999999999998833
Q ss_pred eeeeEEeccCCC
Q 010249 86 FKTIVEYAPSQR 97 (514)
Q Consensus 86 ~~AiVEfAPYQK 97 (514)
....|++|..+.
T Consensus 69 ~~l~v~~a~~~~ 80 (198)
T 1qm9_A 69 KPIRITLSKHQN 80 (198)
T ss_dssp CCCEEEECCCCS
T ss_pred eEEEEEEecCCC
Confidence 356788876554
No 139
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=96.36 E-value=0.0063 Score=46.29 Aligned_cols=66 Identities=18% Similarity=0.238 Sum_probs=45.9
Q ss_pred eEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeE
Q 010249 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFV 79 (514)
Q Consensus 9 KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFv 79 (514)
+|.|++||+.+||+++.+.+..+- .|........+.+. ....-|||.|.+.+++....+. +++.|.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~Ai~~-~~~~~~ 66 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFG--EVESIELPMDNKTN--KRRGFCFITFKEEEPVKKIMEK-KYHNVG 66 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHS--CCSEECCCCSCCCS--SSCCCEEEECSSSHHHHHHHTT-SSCCBT
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCC--CcCCEEEEEECCHHHHHHHHHh-CCCeEC
Confidence 588999999999999999888752 34333222221111 1234599999999999988885 666653
No 140
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=96.34 E-value=0.0083 Score=56.74 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=59.6
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCe
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQ 85 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne 85 (514)
..++|.|.+||+.+||+++.+.+..+-...|.....+.-+.+. ..-.-|||.|.+.+++...++.++++.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg--~skGfaFV~f~~~~~a~~Ai~~lng~~~~G----- 139 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANG--QSKGFALVGVGSEASSKKLMDLLPKRELHG----- 139 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTC--CEEEEEEEEESCTTHHHHHHTTSTTSCBTT-----
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCC--ccceEEEEEECCHHHHHHHHHHcCCCeECC-----
Confidence 5678999999999999999999987531146555554433322 122459999999999999999999998753
Q ss_pred eeeeEEecc
Q 010249 86 FKTIVEYAP 94 (514)
Q Consensus 86 ~~AiVEfAP 94 (514)
....|++|-
T Consensus 140 r~l~V~~a~ 148 (229)
T 3q2s_C 140 QNPVVTPVN 148 (229)
T ss_dssp BCCEEEECC
T ss_pred EEeEEEECC
Confidence 256777763
No 141
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=96.34 E-value=0.017 Score=54.24 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=57.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccC--CcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAF--GGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNE 81 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~--~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDs 81 (514)
..+..+|.|++||+.+||+++...|..++ -|.|....... . ...-.-|||.|.+.+++...++.++|..|.+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~----~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g- 79 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR----S-LKMRGQAFVIFKEVSSATNALRSMQGFPFYD- 79 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC----C-CCcceEEEEEECCHHHHHHHHHHhcCCeeCC-
Confidence 45778999999999999999664333332 13444433332 1 1123569999999999999999999988854
Q ss_pred CCCeeeeeEEec
Q 010249 82 KGVQFKTIVEYA 93 (514)
Q Consensus 82 KGne~~AiVEfA 93 (514)
....|+||
T Consensus 80 ----~~l~v~~a 87 (282)
T 3pgw_A 80 ----KPMRIQYA 87 (282)
T ss_pred ----cEEEEEEe
Confidence 35678887
No 142
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=96.32 E-value=0.011 Score=52.76 Aligned_cols=81 Identities=19% Similarity=0.097 Sum_probs=59.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCe
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQ 85 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne 85 (514)
...+|.|++||+.+||+++.+.+..+-...|....++.-+.+.+ .-.-|||.|.+.+++...++.++|+.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~--skGfaFV~f~~~~~A~~Ai~~lng~~~~G----- 126 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQ--SKGYAEVVVASENSVHKLLELLPGKVLNG----- 126 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCC--EEEEEEEEESCHHHHHHHHHHSTTCEETT-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCc--cceEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 45799999999999999999999875311455555544333221 23469999999999999999999998743
Q ss_pred eeeeEEec
Q 010249 86 FKTIVEYA 93 (514)
Q Consensus 86 ~~AiVEfA 93 (514)
....|++|
T Consensus 127 r~l~V~~a 134 (156)
T 3n9u_C 127 EKVDVRPA 134 (156)
T ss_dssp EECEEEEC
T ss_pred eEeEEEEc
Confidence 25667776
No 143
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=96.31 E-value=0.012 Score=52.13 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=59.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCc-ceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCC
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGG-RYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGV 84 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~g-kvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGn 84 (514)
+...|.|++||+.+|++++.+.+..+ | .|....+++-. -.-|||.|.+.++.....+.++|+.|.+ |
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~--G~~v~~v~i~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~~--g- 186 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSN--GGVVKGFKFFQKD-------RKMALIQMGSVEEAVQALIDLHNHDLGE--N- 186 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHT--TSCCCEEEESSTT-------SSCEEEECSSHHHHHHHHHHHTSSCCSS--C-
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHc--CCCceEEEEEeCC-------CcEEEEEeCCHHHHHHHHHHhcCCccCC--C-
Confidence 46789999999999999999999886 4 56665554521 3579999999999999999999999831 2
Q ss_pred eeeeeEEec
Q 010249 85 QFKTIVEYA 93 (514)
Q Consensus 85 e~~AiVEfA 93 (514)
..-.|+||
T Consensus 187 -~~l~v~~a 194 (198)
T 1qm9_A 187 -HHLRVSFS 194 (198)
T ss_dssp -CSCCEEEE
T ss_pred -CeEEEEee
Confidence 25566665
No 144
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.30 E-value=0.012 Score=49.63 Aligned_cols=71 Identities=13% Similarity=0.104 Sum_probs=50.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCC-cceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCee
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFG-GRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVF 78 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~-gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vF 78 (514)
+....+|.|++||+..||+++.+.+..+-. +.|.....+..+. -..-.-|||.|.+.+++...++ ++++.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~---g~~~G~afV~F~~~~~a~~Al~-~~g~~~ 85 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE---GRQSGEAFVELESEDDVKLALK-KDRESM 85 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS---SCEEEEEEEEBSSHHHHHHHGG-GTTEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC---CCCCeEEEEEECCHHHHHHHHh-cCCCeE
Confidence 446789999999999999999999987521 1123223332222 1123569999999999999998 888766
No 145
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.29 E-value=0.0092 Score=50.46 Aligned_cols=77 Identities=12% Similarity=0.134 Sum_probs=59.0
Q ss_pred CCCCceEEEecCCC-CCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCe-eEeC
Q 010249 4 PLDRTKVVVRNLPP-AITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHV-FVNE 81 (514)
Q Consensus 4 p~~~~KVVIRrLPP-~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~v-FvDs 81 (514)
+.+..+|-|++||+ .+||+++.+.+.++ |.|.....+..+ .-|||.|.+.++....++.+++.. -++
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~f--G~V~~v~i~~~k--------g~aFVef~~~~~A~~Ai~~l~~~~~~~~- 80 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPF--GVISNHLILNKI--------NEAFIEMATTEDAQAAVDYYTTTPALVF- 80 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGG--SCEEEEEECSSS--------SCEEEEESSHHHHHHHHHHHHHSCCEET-
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhc--CCEEEEEEEcCC--------CEEEEEECCHHHHHHHHHHHcCCCceEC-
Confidence 44678999999999 99999999999876 456665555432 249999999999999999888753 122
Q ss_pred CCCeeeeeEEecc
Q 010249 82 KGVQFKTIVEYAP 94 (514)
Q Consensus 82 KGne~~AiVEfAP 94 (514)
| .+..|+||-
T Consensus 81 -G--r~l~V~~a~ 90 (102)
T 1x4d_A 81 -G--KPVRVHLSQ 90 (102)
T ss_dssp -T--EECEEEEEC
T ss_pred -C--cEEEEEECC
Confidence 2 256888886
No 146
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=96.28 E-value=0.0062 Score=48.04 Aligned_cols=79 Identities=15% Similarity=0.171 Sum_probs=55.2
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCeee
Q 010249 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFK 87 (514)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne~~ 87 (514)
.+|.|.+||+.+||+++.+.+... |.|........+.+. ..-.-|||.|.+.+ ....++.++|+.|.+. .
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~-----~ 71 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF--GKVFNVKLIYDRETK--KPKGFGFVEMQEES-VSEAIAKLDNTDFMGR-----T 71 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH--TCCSEEEECCCSSSC--CCCEEEEEEECTTH-HHHHHHTSCSSCCSSS-----S
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc--CCEEEEEEEEcCCCC--CcceEEEEEECCHH-HHHHHHHhCCCEECCe-----E
Confidence 478999999999999998888765 234444443322221 12357999999999 9999999999987532 5
Q ss_pred eeEEeccCC
Q 010249 88 TIVEYAPSQ 96 (514)
Q Consensus 88 AiVEfAPYQ 96 (514)
..|++|.-.
T Consensus 72 l~V~~a~~~ 80 (90)
T 2ki2_A 72 IRVTEANPK 80 (90)
T ss_dssp CSEEEC---
T ss_pred EEEEEcCCC
Confidence 667776543
No 147
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=96.27 E-value=0.0097 Score=49.73 Aligned_cols=78 Identities=19% Similarity=0.192 Sum_probs=57.4
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCee
Q 010249 7 RTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQF 86 (514)
Q Consensus 7 ~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne~ 86 (514)
..+|.|++||+.+||+++.+.+..+ +.|.....+..+... ....-|||.|.+.+++.... .++|+.|.+ .
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-----~ 105 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSC--GSINRITILCDKFSG--HPKGYAYIEFAERNSVDAAV-AMDETVFRG-----R 105 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTT--SCEEEEEEEEECTTS--SCEEEEEEEESSHHHHHHHH-TTTTCEETT-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCCC--CcccEEEEEECCHHHHHHHH-hcCCCeECC-----e
Confidence 4689999999999999999999875 345444443322211 12357999999999999999 799998832 3
Q ss_pred eeeEEecc
Q 010249 87 KTIVEYAP 94 (514)
Q Consensus 87 ~AiVEfAP 94 (514)
...|++|-
T Consensus 106 ~l~V~~a~ 113 (124)
T 2jwn_A 106 TIKVLPKR 113 (124)
T ss_dssp ECEEEESS
T ss_pred EEEEEECC
Confidence 56788764
No 148
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.26 E-value=0.0023 Score=51.67 Aligned_cols=78 Identities=21% Similarity=0.274 Sum_probs=54.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCC--cceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFG--GRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNE 81 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~--gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDs 81 (514)
+.+..+|.|.+||+.+||+++.+.+..+.. ..+-. .-..| ....-|||.|.+.+++...++ ++|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~-~~~~g------~~~g~afV~f~~~~~a~~A~~-l~g~~~~-- 83 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVV-DVRTG------TNRKFGYVDFESAEDLEKALE-LTGLKVF-- 83 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCC-EEEEE------TTTTEEEEEESSHHHHHHHHH-GGGCCBT--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEe-cCCCC------CcCcEEEEEECCHHHHHHHHh-cCCcEEC--
Confidence 346789999999999999999988876521 01100 00011 112459999999999999998 9999885
Q ss_pred CCCeeeeeEEecc
Q 010249 82 KGVQFKTIVEYAP 94 (514)
Q Consensus 82 KGne~~AiVEfAP 94 (514)
| ....|++|-
T Consensus 84 -g--~~l~V~~a~ 93 (101)
T 1fj7_A 84 -G--NEIKLEKPK 93 (101)
T ss_dssp -T--BCCEEECCS
T ss_pred -C--cEEEEEEcC
Confidence 2 256677763
No 149
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=96.24 E-value=0.013 Score=54.16 Aligned_cols=84 Identities=13% Similarity=0.142 Sum_probs=62.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
+|..-++|.|.+||+.+||+++.+.+..+ |.|.....+.. . .---|||.|.+.++...-++.++|+.|.+.
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~f--G~V~~V~i~~k-----~-~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~- 112 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKF--GTVLKIITFTK-----N-NQFQALLQYADPVSAQHAKLSLDGQNIYNA- 112 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHH--SCEEEEEEEES-----S-SCEEEEEEESCHHHHHHHHHHSTTBCSSSS-
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhc--CCEEEEEEEeC-----C-CCCEEEEEECCHHHHHHHHHHhCCCEecCC-
Confidence 46667889999999999999999999876 34443332221 1 123699999999999999999999998753
Q ss_pred CCeeeeeEEeccCCC
Q 010249 83 GVQFKTIVEYAPSQR 97 (514)
Q Consensus 83 Gne~~AiVEfAPYQK 97 (514)
| ..-.|+||--..
T Consensus 113 g--~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 113 C--CTLRIDFSKLTS 125 (164)
T ss_dssp C--SCEEEEECSSSS
T ss_pred C--cEEEEEEecCCc
Confidence 1 256789885443
No 150
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.23 E-value=0.011 Score=44.94 Aligned_cols=66 Identities=14% Similarity=0.076 Sum_probs=48.1
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCee
Q 010249 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVF 78 (514)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vF 78 (514)
++|.|++||+.+|++++.+.+...- .+........+.+. ....-|||.|.+.+++....+.++ +.|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G--~v~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~a~~~~~-~~~ 66 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFG--EVKECLVMRDPLTK--RSRGFGFVTFMDQAGVDKVLAQSR-HEL 66 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTS--CCCCEEEECCCCSS--SCSSEEEECCCCTTHHHHHHHTTT-CCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEecCCCCC--CcCceEEEEEcCHHHHHHHHHhCC-Ccc
Confidence 4789999999999999999998752 34433343322211 123579999999999999999887 554
No 151
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.23 E-value=0.018 Score=46.51 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=56.8
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
+..+..+|.|++||+.+||+++.+.+..+ +.|.....+..+.+. ..-.-|||.|.+.+++...++ +++.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~a~~A~~--~~~~~~--- 81 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTF--GEVLMVQVKKDLKTG--HSKGFGFVRFTEYETQVKVMS--QRHMID--- 81 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGG--SCEEEEEEEECSSSC--SEEEEEEEEESSHHHHHHHHH--SCEEET---
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhc--CCeEEEEEEecCCCC--CccceEEEEECCHHHHHHHHH--cCCeeC---
Confidence 34567899999999999999999999875 345444444332221 123469999999999998887 344332
Q ss_pred CCeeeeeEEeccCC
Q 010249 83 GVQFKTIVEYAPSQ 96 (514)
Q Consensus 83 Gne~~AiVEfAPYQ 96 (514)
| ....|++|--.
T Consensus 82 g--~~l~v~~a~~~ 93 (103)
T 2cqg_A 82 G--RWCDCKLPNSK 93 (103)
T ss_dssp T--EEEEEECCCTT
T ss_pred C--eEEEEEecCCC
Confidence 2 35677777543
No 152
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=96.21 E-value=0.012 Score=50.29 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=46.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHH
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEF 72 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~ 72 (514)
+..+|.|++||+.+||+++.+.+..+ |.|.....+.-..+.+ .-.-|||.|.+.+++....+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g~--~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKY--GTVTDLKIMKDPATGR--SRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTT--CCEEEEECCCCTTTSS--CCSCEEEEESSTHHHHHHHHS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEECCCCCC--ccceEEEEEccHHHHHHHHhc
Confidence 45789999999999999999999875 3455544443222211 124599999999999988885
No 153
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=96.19 E-value=0.018 Score=53.12 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=59.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCc-ceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCC
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGG-RYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGV 84 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~g-kvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGn 84 (514)
+..+|.|++||+.+|++++.+.+..+ + .|....+++-. -..|||.|.+.+++....+.++|..|.+ |
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~--G~~i~~v~i~~~~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~~--g- 217 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSN--GGVVKGFKFFQKD-------RKMALIQMGSVEEAVQALIDLHNHDLGE--N- 217 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTT--SCCEEEEEECSSS-------TTCEEEEESSHHHHHHHHHHHTTCBSSS--S-
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHc--CCCeeEEEEEECC-------CcEEEEEECCHHHHHHHHHHHCCCccCC--C-
Confidence 35889999999999999999999986 4 56666665521 2479999999999999999999998841 2
Q ss_pred eeeeeEEec
Q 010249 85 QFKTIVEYA 93 (514)
Q Consensus 85 e~~AiVEfA 93 (514)
..-.|+||
T Consensus 218 -~~l~v~~a 225 (229)
T 2adc_A 218 -HHLRVSFS 225 (229)
T ss_dssp -CBCEEEEC
T ss_pred -CeEEEEEe
Confidence 25667776
No 154
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.06 E-value=0.023 Score=47.31 Aligned_cols=72 Identities=17% Similarity=0.287 Sum_probs=53.2
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEe
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVN 80 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvD 80 (514)
......+|-|.+||+.+||+++.+.+..+ |.|.....+.... + ..-.-|||.|.+.+++...++ .+|+.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~--G~v~~v~i~~d~~--g-~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g 78 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDK--GQVLNIQMRRTLH--K-AFKGSIFVVFDSIESAKKFVE-TPGQKYKE 78 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTS--SCEEEEEEECCCT--T-SCCCEEEEEESSHHHHHHHHT-SSCCCCTT
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhc--CCEEEEEEEECCC--C-CCccEEEEEECCHHHHHHHHH-cCCCEECC
Confidence 34566899999999999999999999875 3455444433222 1 122469999999999999998 78887743
No 155
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.05 E-value=0.026 Score=46.31 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=49.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeE-EEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCee
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNW-VSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVF 78 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdw-fyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vF 78 (514)
+....+|.|++||+..||+++.+.+..+ +.|.. ...+. +.. . ..-.-|||.|.+.+++...++. +++.|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~v~~~v~i~~-~~~-g-~~~G~afV~F~~~~~a~~A~~~-~~~~~ 81 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGL--EIVPNGMTLPV-DFQ-G-RSTGEAFVQFASQEIAEKALKK-HKERI 81 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTC--CEEEEEEECCB-CSS-S-CBCSEEEEEESSHHHHHHHHTT-TTCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCcceeEEEEE-CCC-C-CcceEEEEEECCHHHHHHHHHh-Ccchh
Confidence 4567999999999999999999999875 33432 22221 111 1 1225699999999999999987 77665
No 156
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=96.03 E-value=0.024 Score=53.21 Aligned_cols=74 Identities=16% Similarity=0.280 Sum_probs=57.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCe
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQ 85 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne 85 (514)
+..+|.|++||+.+||+++.+.+..+ | |..... |+. -.-|||.|.+.+++....+.++|..|.+
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~--G-i~~~~~--~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~g----- 84 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDY--E-LKYCFV--DKY------KGTAFVTLLNGEQAEAAINAFHQSRLRE----- 84 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTS--C-EEEEEE--ETT------TTEEEEEESSHHHHHHHHHHHTTCEETT-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHc--C-CEEEEE--ecC------CCEEEEEeCCHHHHHHHHHHcCCCeeCC-----
Confidence 56889999999999999999999875 3 444332 221 2369999999999999999999998753
Q ss_pred eeeeEEeccC
Q 010249 86 FKTIVEYAPS 95 (514)
Q Consensus 86 ~~AiVEfAPY 95 (514)
....|+++|-
T Consensus 85 ~~i~v~~~~~ 94 (284)
T 3smz_A 85 RELSVQLQPT 94 (284)
T ss_dssp EECEEEECCC
T ss_pred eEEEEEecCC
Confidence 3566777663
No 157
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.02 E-value=0.028 Score=46.76 Aligned_cols=75 Identities=21% Similarity=0.331 Sum_probs=52.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCC-CCCcceEEEEEcCChhhHHHHHHHh---CCCeeE
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQ-KHQSCARAYLDFKKPEDVLEFAEFF---NGHVFV 79 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~-Kp~~ySRAYI~Fkn~Edl~~F~~~f---dG~vFv 79 (514)
.....+|.|.+||+.+||+++.+.+..+ +.|. ...+.-.... .-..-.-|||.|.+.+++...++.+ +|+.|+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~--G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRF--GPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTT--CCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhc--CCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEE
Confidence 3567899999999999999999999875 3444 3332222111 0112356999999999999888887 888765
Q ss_pred eC
Q 010249 80 NE 81 (514)
Q Consensus 80 Ds 81 (514)
-.
T Consensus 82 ~~ 83 (114)
T 2dnl_A 82 CV 83 (114)
T ss_dssp EE
T ss_pred ec
Confidence 43
No 158
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.01 E-value=0.019 Score=48.47 Aligned_cols=79 Identities=9% Similarity=0.037 Sum_probs=54.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCc-ceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGG-RYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~g-kvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
+.+..+|.|++||+.+||+++.+.+..+-.- .+....... . ...-.-|||.|.+.+++...++ ++++.|.+-
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~---~--g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr- 94 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGP---N--GKATGEGFVEFRNEADYKAALC-RHKQYMGNR- 94 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECT---T--SSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS-
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECC---C--CCCCeEEEEEECCHHHHHHHHH-hCCCeECCc-
Confidence 4567899999999999999999998875311 111211111 0 1123569999999999999999 898876432
Q ss_pred CCeeeeeEEec
Q 010249 83 GVQFKTIVEYA 93 (514)
Q Consensus 83 Gne~~AiVEfA 93 (514)
...|++|
T Consensus 95 ----~i~V~~a 101 (124)
T 1wel_A 95 ----FIQVHPI 101 (124)
T ss_dssp ----CBEEEEE
T ss_pred ----EEEEEEC
Confidence 4456655
No 159
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=96.00 E-value=0.022 Score=51.97 Aligned_cols=71 Identities=21% Similarity=0.310 Sum_probs=52.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeE
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFV 79 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFv 79 (514)
.+...|-|++||+.+||+++.+.+..+ |.|.....+.-+.+. ....-|||.|.+.+++..-++.+++..|.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~tg--~~~G~afV~F~~~~~A~~Ai~~~~~~~~~ 83 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPA--GPILSIRVCRDMITR--RSLGYAYVNFQQPADAERALDTMNFDVIK 83 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhh--CCEEEEEEecccCCC--CccccccceeCCHHHHHHHHHHhhhhhcC
Confidence 356789999999999999999999875 345544443322211 12356999999999999999999998874
No 160
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=95.99 E-value=0.026 Score=46.83 Aligned_cols=82 Identities=13% Similarity=0.039 Sum_probs=53.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
.+.+..+|.|.+||+.+||+++.+.+..+ |.|.....+....+. ..-.-|||.|.+.+++...++.. ++.| +.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~tg--~~kg~afV~f~~~~~A~~Ai~~~-~~~l-~g- 93 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQF--GEVKECLVMRDPLTK--RSRGFGFVTFMDQAGVDKVLAQS-RHEL-DS- 93 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEECCCTTTC--CCTTCEEEEESSHHHHHHHHHSS-CEEE-TT-
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHcc--CCeEEEEEEECCCCC--CcCcEEEEEECCHHHHHHHHHHC-CCcC-CC-
Confidence 45678899999999999999999999875 345544443322211 12346999999999999988875 3333 22
Q ss_pred CCeeeeeEEecc
Q 010249 83 GVQFKTIVEYAP 94 (514)
Q Consensus 83 Gne~~AiVEfAP 94 (514)
....|++|-
T Consensus 94 ---~~l~V~~a~ 102 (109)
T 2rs2_A 94 ---KTIDPKVAF 102 (109)
T ss_dssp ---EEEEEEECC
T ss_pred ---EEEEEEEcc
Confidence 245677663
No 161
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=95.96 E-value=0.024 Score=46.54 Aligned_cols=77 Identities=12% Similarity=0.196 Sum_probs=56.8
Q ss_pred CceEEEecCCCCC------CHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEe
Q 010249 7 RTKVVVRNLPPAI------TQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVN 80 (514)
Q Consensus 7 ~~KVVIRrLPP~L------TEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvD 80 (514)
..+|.|.+||+.. |++++.+.+..+ |.|..... + ..+ ...-.-|||.|.+.+++..-++.++|+.|.+
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~v~~v~i-~-~~~--g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFY-P-EED--GKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGG--SCEEEEEC-C-CBT--TBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcC--CCEEEEEe-e-CCC--CCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 5799999999999 789999998875 34554433 3 111 1223579999999999999999999998853
Q ss_pred CCCCeeeeeEEec
Q 010249 81 EKGVQFKTIVEYA 93 (514)
Q Consensus 81 sKGne~~AiVEfA 93 (514)
. ....|++|
T Consensus 89 ~----~~l~V~~a 97 (105)
T 2nlw_A 89 Q----HTFRVNLF 97 (105)
T ss_dssp T----CEEEEECS
T ss_pred C----ceEEEEEc
Confidence 2 24566666
No 162
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=95.93 E-value=0.028 Score=51.94 Aligned_cols=81 Identities=21% Similarity=0.250 Sum_probs=60.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCcce--eEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRY--NWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkv--dwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
+..+|.|++||+.+||+++.+.+.+.- .| .-...++.+ .+ ...-|||.|.+.++...-+..++|+.+....+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G--~v~~~~v~~~~~~--~~--~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~ 195 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELG--VKRPTSVKVFSGK--SE--RSSSGLLEWDSKSDALETLGFLNHYQMKNPNG 195 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHT--CCCCSEEEECSCC--SS--SSEEEEEECSSHHHHHHHHHHHTTCEECCSSS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcC--CcceEEEEEEcCC--CC--CceEEEEEeCCHHHHHHHHHHhCCCCccCCCC
Confidence 345799999999999999999998753 23 333444433 11 12789999999999999999999998765544
Q ss_pred CeeeeeEEec
Q 010249 84 VQFKTIVEYA 93 (514)
Q Consensus 84 ne~~AiVEfA 93 (514)
.++-+|.||
T Consensus 196 -~~p~~vk~~ 204 (205)
T 3tyt_A 196 -PYPYTLKLC 204 (205)
T ss_dssp -SSCEECEEE
T ss_pred -CcceEEEec
Confidence 466666665
No 163
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=95.91 E-value=0.019 Score=44.64 Aligned_cols=67 Identities=12% Similarity=0.233 Sum_probs=50.5
Q ss_pred ceEEEecCCCCC------CHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEe
Q 010249 8 TKVVVRNLPPAI------TQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVN 80 (514)
Q Consensus 8 ~KVVIRrLPP~L------TEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvD 80 (514)
.+|.|.+||+.. ||+++.+.+..+ |.|..... + +.+. ..-.-|||.|.+.+++....+.++|+.|.+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~i-~-~~~g--~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 74 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFY-P-EEDG--KTKGYIFLEYASPAHAVDAVKNADGYKLDK 74 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEEC-C-CBTT--BCCCEEEEEESSHHHHHHHHTTSSSCCCSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEEe-c-CCCC--cEeEEEEEEECCHHHHHHHHHHhcCcccCC
Confidence 579999999999 789999888875 34544443 3 1111 123569999999999999999999998754
No 164
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=95.89 E-value=0.024 Score=49.57 Aligned_cols=80 Identities=14% Similarity=0.163 Sum_probs=56.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCe
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQ 85 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne 85 (514)
+..+|.|++||+.+|++++.+.+..+ +.|.....+...... ..-.-|||.|.+.+++....+. +|+.|.+
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~g--~~~g~afV~F~~~~~A~~A~~~-~~~~~~G----- 172 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQY--GKIEVIEIMTDRGSG--KKRGFAFVTFDDHDSVDKIVIQ-KYHTVNG----- 172 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTT--SCEEEEEEEECTTTC--CEEEEEEEEESSHHHHHHHHHC-SCCEETT-----
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcC--CCeEEEEEeecCCCC--CccceEEEEECCHHHHHHHHHh-CCcEECC-----
Confidence 44789999999999999999999875 456665555433221 1224599999999999888776 6665532
Q ss_pred eeeeEEeccC
Q 010249 86 FKTIVEYAPS 95 (514)
Q Consensus 86 ~~AiVEfAPY 95 (514)
....|.+|.-
T Consensus 173 ~~i~v~~a~~ 182 (196)
T 1l3k_A 173 HNCEVRKALS 182 (196)
T ss_dssp EECEEEECC-
T ss_pred EEEEEEecCC
Confidence 2566777643
No 165
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=95.88 E-value=0.027 Score=53.05 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=58.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
..+..+|.|++||+.+||+++.+.+..+ |.|........ -.-|||.|.+.+++......++|..|. |
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~--------kg~afV~f~~~~~A~~A~~~l~g~~i~---g 85 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERY--GEPSEVFINRD--------RGFGFIRLESRTLAEIAKAELDGTILK---S 85 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGG--CCCSEEEEETT--------TTEEEEECSSHHHHHHHHHHHTTCEET---T
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEeCC--------CcEEEEEECCHHHHHHHHHHcCCcEEC---C
Confidence 4566799999999999999999999875 33444333221 257999999999999999999999873 2
Q ss_pred CeeeeeEEecc
Q 010249 84 VQFKTIVEYAP 94 (514)
Q Consensus 84 ne~~AiVEfAP 94 (514)
....|++|.
T Consensus 86 --~~l~v~~a~ 94 (261)
T 3sde_A 86 --RPLRIRFAT 94 (261)
T ss_dssp --EECEEEECC
T ss_pred --ceeEeeecc
Confidence 356777764
No 166
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=95.86 E-value=0.069 Score=47.46 Aligned_cols=85 Identities=13% Similarity=0.103 Sum_probs=63.2
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceE-EEEEcCChhhHHHHHHHhCCCeeEe
Q 010249 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCAR-AYLDFKKPEDVLEFAEFFNGHVFVN 80 (514)
Q Consensus 2 k~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySR-AYI~Fkn~Edl~~F~~~fdG~vFvD 80 (514)
.+|..-++|.|++||..+||+++.+.++.+- .|.-..-+. + . -.- |+|.|.+.++...-++.++|..|.+
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG--~V~~V~i~~-~----~--~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFG--TVLKIITFT-K----N--NQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHTTSS--CEEEEEEEE-E----T--TEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHhCcC--CEEEEEEEc-C----C--CCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 3567779999999999999999999999763 333222111 1 1 123 9999999999999999999999987
Q ss_pred CCCCeeeeeEEeccCCCC
Q 010249 81 EKGVQFKTIVEYAPSQRV 98 (514)
Q Consensus 81 sKGne~~AiVEfAPYQKv 98 (514)
. .-.-.|+||--..+
T Consensus 94 ~---~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 94 A---CCTLRIDFSKLTSL 108 (130)
T ss_dssp T---EEEEEEEECSCSSC
T ss_pred C---CcEEEEEecCCCce
Confidence 2 24668999965544
No 167
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=95.81 E-value=0.058 Score=50.57 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=61.0
Q ss_pred CCCceEEEecCCCCC-CHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCC
Q 010249 5 LDRTKVVVRNLPPAI-TQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKG 83 (514)
Q Consensus 5 ~~~~KVVIRrLPP~L-TEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKG 83 (514)
.+...|.|++||+.+ ||+++.+.+..+ |.|.......... .....-|||.|.+.++.......++|+.| .|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~--G~i~~v~i~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g 253 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAV--HSPTFCQLACGQD---GQLKGFAVLEYETAEMAEEAQQQADGLSL---GG 253 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSS--SCCSEEEEEECSS---CCEEEEEEEECSSHHHHHHHHHHHTTCEE---TT
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCC--CCeEEEEEEECCC---CCcccEEEEEeCCHHHHHHHHHHhCCCcc---CC
Confidence 456789999999997 999999999875 3455544444321 22346799999999999999999999999 22
Q ss_pred CeeeeeEEecc
Q 010249 84 VQFKTIVEYAP 94 (514)
Q Consensus 84 ne~~AiVEfAP 94 (514)
..-.|.||.
T Consensus 254 --~~l~v~~a~ 262 (284)
T 3smz_A 254 --SHLRVSFCA 262 (284)
T ss_dssp --EECEEEECC
T ss_pred --eEEEEEEec
Confidence 367788873
No 168
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.80 E-value=0.025 Score=46.71 Aligned_cols=70 Identities=16% Similarity=0.108 Sum_probs=50.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeE
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFV 79 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFv 79 (514)
.+....+|.|++||+.+||+++.+.+.++-. + ....+..+ . -..-.-|||.|.+.+++...++ .+++.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~--~-~v~i~~d~-~--g~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP--M-RVHIEIGP-D--GRVTGEADVEFATHEDAVAAMA-KDKANMQ 80 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC--S-EEEEEESS-S--SCEEEEEEEECSSSHHHHHHHT-TSSCCSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc--e-EEEEEECC-C--CCEeeEEEEEECCHHHHHHHHH-hCCCeEC
Confidence 3567789999999999999999999987532 2 22222222 1 1122459999999999998885 5876653
No 169
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.78 E-value=0.022 Score=48.28 Aligned_cols=66 Identities=18% Similarity=0.257 Sum_probs=49.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCee
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVF 78 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vF 78 (514)
+..+|.|++||+..||+++.+.+.++ .|.....+..+. .. .-.-|||.|.+.+++...+ .++++.|
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~---~v~~v~i~~d~~--g~-~~G~afV~F~~~~~a~~Al-~~~~~~~ 80 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL---RVDAVHLLKDHV--GR-NNGNGLVKFLSPQDTFEAL-KRNRMLM 80 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS---CCCEEEECCCTT--CC-CCSEEEEECSSHHHHHHHH-HTTTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC---CeeEEEEEECCC--CC-CCeEEEEEECCHHHHHHHH-hcCCCeE
Confidence 35799999999999999999999986 244444443221 11 1356999999999999888 5787765
No 170
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=95.76 E-value=0.021 Score=47.07 Aligned_cols=72 Identities=14% Similarity=0.065 Sum_probs=51.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCC-cceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCee
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFG-GRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVF 78 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~-gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vF 78 (514)
++....+|.|++||+..||+++.+.+..+-. +.|....++..+. . ..-.-|||.|.+.+++...++ +++..|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~--g-~~~G~afV~F~~~~~a~~Al~-~~~~~~ 79 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD--G-KRRGDALIEMESEQDVQKALE-KHRMYM 79 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT--S-TTCSEEEEEBSSHHHHHHHHT-TTTCCS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC--C-CEeeEEEEEECCHHHHHHHHH-hCccee
Confidence 3567889999999999999999998887421 1133333332221 1 122569999999999999988 887665
No 171
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=95.76 E-value=0.018 Score=49.07 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=55.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCcceeE--EEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCC----ee
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNW--VSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGH----VF 78 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdw--fyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~----vF 78 (514)
.+..+|.|++||+.+||+++.+.+..+- .|.. ...+.-+.+. ..-.-|||.|.+. +....++.++|+ .|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G--~v~~~~v~i~~d~~tg--~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYA--VLSSSNVRVIKDKQTQ--LNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGC--CCCTTTEECCBCSSSS--SBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhC--CcceeeEEEEEcCCCC--CcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 4678999999999999999999998753 2321 2232222211 1135699999999 999999999998 55
Q ss_pred EeCCCCeeeeeEEec
Q 010249 79 VNEKGVQFKTIVEYA 93 (514)
Q Consensus 79 vDsKGne~~AiVEfA 93 (514)
.+ ....|+||
T Consensus 96 ~g-----r~l~V~~a 105 (131)
T 2m2b_A 96 DG-----KTINVEFA 105 (131)
T ss_dssp GG-----CCCCCEEC
T ss_pred CC-----EEEEEEEC
Confidence 32 24566766
No 172
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=95.69 E-value=0.025 Score=49.93 Aligned_cols=72 Identities=13% Similarity=0.069 Sum_probs=51.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCc-ceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeE
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGG-RYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFV 79 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~g-kvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFv 79 (514)
+.+.++|.|++||+..||+++.+.+..+-.- .|.....+..+. -..-.-|||.|.+.+++..-++ ++++.|-
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~---g~srG~aFV~F~~~e~a~~Al~-~~g~~l~ 113 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE---GRQSGEAFVELGSEDDVKMALK-KDRESMG 113 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS---SCEEEEEEEECSSHHHHHHHHT-TTEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC---CCCCeEEEEEECCHHHHHHHHh-cCCCEEC
Confidence 4567899999999999999999999875320 023223332221 1123469999999999999988 8887663
No 173
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=95.60 E-value=0.026 Score=45.52 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=49.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCee
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVF 78 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vF 78 (514)
...+|.|.+||+.+||+++.+.+..+ |.|.....+... . ...-.-|||.|.+.+++....+ +++.|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~--g~~~g~afV~f~~~~~a~~Ai~--~~~~~ 73 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARY--GSVKEVKIITDR-T--GVSKGYGFVSFYNDVDVQKIVE--SQINF 73 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECT-T--SCEEEEEEEEESSCCCHHHHTT--CCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEEECC-C--CCccceEEEEECCHHHHHHHHh--CCCeE
Confidence 45789999999999999999999875 345554444433 2 1223579999999999998888 55544
No 174
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=95.57 E-value=0.043 Score=51.68 Aligned_cols=83 Identities=18% Similarity=0.205 Sum_probs=59.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCC
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGV 84 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGn 84 (514)
....+|.|++||+.+|++++.+.+..+- ..|....++.-.. ...-.-|||.|.+.+++....+.++|+.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~~i~~v~i~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---- 186 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDIN-VVALSIRLPSLRF---NTSRRFAYIDVTSKEDARYCVEKLNGLKIEG---- 186 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTT-CCCCEEECC----------CCEEEEECSSHHHHHHHHHHHTTCEETT----
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhC-CCeEEEEEEeCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEeCC----
Confidence 3568999999999999999999998753 0455444432221 1123569999999999999999999998832
Q ss_pred eeeeeEEeccCC
Q 010249 85 QFKTIVEYAPSQ 96 (514)
Q Consensus 85 e~~AiVEfAPYQ 96 (514)
....|++|--+
T Consensus 187 -~~l~v~~a~~~ 197 (292)
T 2ghp_A 187 -YTLVTKVSNPL 197 (292)
T ss_dssp -EECEEEECCCC
T ss_pred -cEEEEEECCCC
Confidence 46678877543
No 175
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=95.56 E-value=0.032 Score=47.56 Aligned_cols=77 Identities=17% Similarity=0.167 Sum_probs=54.1
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCee
Q 010249 7 RTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQF 86 (514)
Q Consensus 7 ~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne~ 86 (514)
..+|.|++||+.+|++++.+.+..+ |.|.....+..+... ..-.-|||.|.+.+++....+ .+|..|.+ .
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~~g--~~~g~afV~f~~~~~a~~A~~-~~~~~~~g-----~ 156 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQW--GTIIDAQLMLDKDTG--QSRGFGFVTYDSADAVDRVCQ-NKFIDFKD-----R 156 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTT--SCCSEEECCCSSSSS--TTSEEEEEEESSHHHHHHHHH-CSEECSSS-----S
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhC--ccEEEEEEEEcCCCC--ccceEEEEEECCHHHHHHHHh-CCCEEeCC-----e
Confidence 4589999999999999999999875 345554444332221 122469999999999998887 66666532 2
Q ss_pred eeeEEec
Q 010249 87 KTIVEYA 93 (514)
Q Consensus 87 ~AiVEfA 93 (514)
...|+||
T Consensus 157 ~i~V~~a 163 (167)
T 2cjk_A 157 KIEIKRA 163 (167)
T ss_dssp CEEEEEC
T ss_pred EEEEeec
Confidence 4566665
No 176
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.54 E-value=0.11 Score=41.62 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=57.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
.+.+..+|.|.+| .+||+++.+.+..+ +.|...... ..-..|||.|.+.+++...++.++|+.|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~--G~i~~v~i~--------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--- 75 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPF--GNIIDLSMD--------PPRNCAFVTYEKMESADQAVAELNGTQVE--- 75 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTT--SCEEEEEEE--------TTTTEEEEEESSHHHHHHHHHHTTTEEET---
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhC--CCEEEEEec--------CCCCEEEEEECCHHHHHHHHHHhCCCeEC---
Confidence 3457789999997 99999999999875 345443331 11246999999999999999999999883
Q ss_pred CCeeeeeEEeccC
Q 010249 83 GVQFKTIVEYAPS 95 (514)
Q Consensus 83 Gne~~AiVEfAPY 95 (514)
| ....|+||--
T Consensus 76 g--~~l~v~~a~~ 86 (97)
T 1x5p_A 76 S--VQLKVNIARK 86 (97)
T ss_dssp T--EEEEEECCSS
T ss_pred C--eEEEEEECCC
Confidence 3 3667888743
No 177
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=95.54 E-value=0.037 Score=52.11 Aligned_cols=82 Identities=18% Similarity=0.161 Sum_probs=57.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
.+.+...|.|++||+.+||+++.+.+..+ |.|.....+..... ...-|||.|.+.+++....+ ++|..|.+
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~----~~g~afV~f~~~~~A~~A~~-~~~~~~~g-- 107 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHC--GPIIHVDVADSLKK----NFRFARIEFARYDGALAAIT-KTHKVVGQ-- 107 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGG--SCEEEEEEEECTTS----SSEEEEEEESSHHHHHHHHT-TTTCEETT--
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCC----CcEEEEEEECCHHHHHHHHH-hCCcEeCC--
Confidence 35568899999999999999999999875 34544444432211 13789999999999999995 88887733
Q ss_pred CCeeeeeEEeccCC
Q 010249 83 GVQFKTIVEYAPSQ 96 (514)
Q Consensus 83 Gne~~AiVEfAPYQ 96 (514)
....|++++..
T Consensus 108 ---~~i~v~~~~~~ 118 (292)
T 2ghp_A 108 ---NEIIVSHLTEC 118 (292)
T ss_dssp ---EECEEEECCSC
T ss_pred ---cEEEEEECCCC
Confidence 25567776543
No 178
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=95.43 E-value=0.017 Score=47.21 Aligned_cols=80 Identities=14% Similarity=0.210 Sum_probs=56.9
Q ss_pred CCceEEEecCCC------CCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeE
Q 010249 6 DRTKVVVRNLPP------AITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFV 79 (514)
Q Consensus 6 ~~~KVVIRrLPP------~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFv 79 (514)
....|.|.+||+ .+||+++.+.+..+ |.|.....+.-+.+. ..-.-|||.|.+.+++...++.++|+.|.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~--G~i~~v~i~~d~~tg--~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKA--GKVVNMEFPIDEATG--KTKGFLFVECGSMNDAKKIIKSFHGKRLD 80 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTT--SCEEEEECCEETTTT--EECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhc--CCEeEEEEEEcCCCC--ccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence 457899999999 99999999999875 345443332211111 12256999999999999999999999885
Q ss_pred eCCCCeeeeeEEec
Q 010249 80 NEKGVQFKTIVEYA 93 (514)
Q Consensus 80 DsKGne~~AiVEfA 93 (514)
.. ....|++|
T Consensus 81 g~----r~l~V~~a 90 (100)
T 3ns6_A 81 LK----HRLFLYTM 90 (100)
T ss_dssp SS----CBCEEEES
T ss_pred CC----eEEEEEEC
Confidence 42 24455555
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=95.26 E-value=0.013 Score=50.75 Aligned_cols=82 Identities=20% Similarity=0.274 Sum_probs=56.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCc-ceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGG-RYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNE 81 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~g-kvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDs 81 (514)
.+.+..+|.|++||+.+||+++.+.+..+..- .+.......|. .-.-|||.|.+.+++....+ ++|..|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~------~~g~afV~f~~~~~a~~A~~-l~g~~~~g- 80 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGT------NRKFGYVDFESAEDLEKALE-LTGLKVFG- 80 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEET------TTTEEEEEESSHHHHHHHHH-GGGEEETT-
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCc------cccEEEEEECCHHHHHHHHh-cCCCEeCC-
Confidence 56788999999999999999988887765310 00111111121 23579999999999999994 99988762
Q ss_pred CCCeeeeeEEeccCC
Q 010249 82 KGVQFKTIVEYAPSQ 96 (514)
Q Consensus 82 KGne~~AiVEfAPYQ 96 (514)
....|++|.-.
T Consensus 81 ----~~l~v~~~~~~ 91 (175)
T 1fje_B 81 ----NEIKLEKPKGR 91 (175)
T ss_dssp ----EEEEEECCCCS
T ss_pred ----eEEEEecCCCc
Confidence 25667776543
No 180
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=95.25 E-value=0.11 Score=41.74 Aligned_cols=75 Identities=17% Similarity=0.123 Sum_probs=49.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
++.+..+|.|.+||+.+||+++.+.+..+ |.|.....+. + .-.-|||.|.+.+++. .+++..|.- +
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~--G~i~~v~i~~-~------srGfaFV~F~~~~~A~----~~~~~~~~~-~ 72 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQY--GEVVDVFIPK-P------FRAFAFVTFADDKVAQ----SLCGEDLII-K 72 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEECCS-S------CCSEEEEEESCHHHHH----HHTTCEEEE-T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcc--CCEEEEEEee-C------CCCEEEEEECCHHHHH----HHcCCCccc-C
Confidence 46678999999999999999999999875 4455433322 1 1246999999999886 466664431 2
Q ss_pred CCeeeeeEEec
Q 010249 83 GVQFKTIVEYA 93 (514)
Q Consensus 83 Gne~~AiVEfA 93 (514)
| ....|.+|
T Consensus 73 g--~~v~v~~a 81 (89)
T 3d2w_A 73 G--ISVHISNA 81 (89)
T ss_dssp T--EEEEEEEC
T ss_pred C--EEEEEEEc
Confidence 2 34556655
No 181
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.23 E-value=0.054 Score=47.85 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=52.4
Q ss_pred CCCceEEEecCCCC-CCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCC-hhhHHHHHHHh
Q 010249 5 LDRTKVVVRNLPPA-ITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKK-PEDVLEFAEFF 73 (514)
Q Consensus 5 ~~~~KVVIRrLPP~-LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn-~Edl~~F~~~f 73 (514)
..++-|.|..||+. .|+++|.+.+..+ +.|.|..|+.|... |||.|.+ .++...++..+
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~--G~V~~Vd~~~g~~t--------gfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNH--GEIKWIDFVRGAKE--------GIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSS--CCEEEEECCTTCSE--------EEEEESSCHHHHHHHHHHT
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhc--CCEEEEEEecCCCE--------EEEEECCChHHHHHHHHHh
Confidence 46889999999999 9999999999974 46999999998874 9999999 78888888876
No 182
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.15 E-value=0.11 Score=45.57 Aligned_cols=81 Identities=14% Similarity=0.089 Sum_probs=59.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcce-EEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCA-RAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~yS-RAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
|..-++|.|.+||..+||+++.+.++.+- .|....-+. + . . .|+|.|.+.++...-++.++|..|.+.
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG--~V~~v~i~~-~-----~--Gf~aFVef~~~~~A~~A~~~LnG~~i~g~- 90 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVG--KVQRIVIFK-R-----N--GIQAMVEFESVLCAQKAKAALNGADIYAG- 90 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTS--CEEEEEEEE-S-----S--SEEEEEEESSHHHHHHHHHHHTTCCCBTT-
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcC--CEEEEEEEe-C-----C--CCEEEEEECCHHHHHHHHHHhCCCEecCC-
Confidence 34456677999999999999999999863 343322222 1 1 4 499999999999999999999988652
Q ss_pred CCeeeeeEEeccCCC
Q 010249 83 GVQFKTIVEYAPSQR 97 (514)
Q Consensus 83 Gne~~AiVEfAPYQK 97 (514)
.....|+||--..
T Consensus 91 --~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 91 --CCTLKIEYARPTR 103 (124)
T ss_dssp --BSEEEEECCSCSC
T ss_pred --CeEEEEEEecCCc
Confidence 2356788885443
No 183
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=95.05 E-value=0.052 Score=46.48 Aligned_cols=76 Identities=22% Similarity=0.379 Sum_probs=53.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccC--Cc-------ceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCC
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAF--GG-------RYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGH 76 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~--~g-------kvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~ 76 (514)
+..+|.|++||+.+||+++.+.+.... .+ .+....... .-.-|||.|.+.+++.... .++|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--------~~g~afV~f~~~~~A~~A~-~~~~~ 73 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--------DKNFAFLEFRSVDETTQAM-AFDGI 73 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--------TTTEEEEEESSHHHHHHHG-GGTTC
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC--------CCCEEEEEeCCHHHHHHHH-HhCCc
Confidence 457899999999999999999888751 11 232222211 1367999999999999999 89998
Q ss_pred eeEeCCCCeeeeeEEeccC
Q 010249 77 VFVNEKGVQFKTIVEYAPS 95 (514)
Q Consensus 77 vFvDsKGne~~AiVEfAPY 95 (514)
.|. | ....|+++.-
T Consensus 74 ~~~---g--~~i~v~~~~~ 87 (172)
T 2g4b_A 74 IFQ---G--QSLKIRRPHD 87 (172)
T ss_dssp EET---T--EECEEECCSS
T ss_pred Eec---C--ceeeecCCcc
Confidence 873 2 2455666543
No 184
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.03 E-value=0.043 Score=47.36 Aligned_cols=77 Identities=13% Similarity=0.201 Sum_probs=56.4
Q ss_pred CCCCceEEEecCCCC-CCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCe-eEeC
Q 010249 4 PLDRTKVVVRNLPPA-ITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHV-FVNE 81 (514)
Q Consensus 4 p~~~~KVVIRrLPP~-LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~v-FvDs 81 (514)
..+..+|-|++||+. +||+++.+.+.++ |.|.....+.. -.-|||.|.+.++....++.+++.. .++
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~f--G~V~~v~i~~~--------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~- 90 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPY--GKIKNYILMRM--------KSQAFIEMETREDAMAMVDHCLKKALWFQ- 90 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTT--SCCSEEEEETT--------TTEEEEECSSHHHHHHHHHHHHHSCCCSS-
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhc--CCEEEEEEecC--------CCEEEEEECCHHHHHHHHHHhccCCceEC-
Confidence 456789999999998 9999999988875 34555555432 2469999999999999998886532 122
Q ss_pred CCCeeeeeEEecc
Q 010249 82 KGVQFKTIVEYAP 94 (514)
Q Consensus 82 KGne~~AiVEfAP 94 (514)
| ....|+||-
T Consensus 91 -G--r~l~V~~a~ 100 (112)
T 1x4f_A 91 -G--RCVKVDLSE 100 (112)
T ss_dssp -S--SCCEEEEEC
T ss_pred -C--EEEEEEECc
Confidence 2 256788873
No 185
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=95.02 E-value=0.12 Score=48.75 Aligned_cols=85 Identities=13% Similarity=0.182 Sum_probs=60.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCC
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGV 84 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGn 84 (514)
.+..+|.|++||+.+|++++.+.+..+ |.|.....+... . ...-.-|||.|.+.+++...++.+++..|......
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~~--~-g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 168 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQF--GPVEKAVVVVDD--R-GRATGKGFVEFAAKPPARKALERCGDGAFLLTTTP 168 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEEET--T-SCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSC
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhc--CCeEEEEeeeCC--C-CCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCC
Confidence 356789999999999999999999875 345554444332 1 11235699999999999999999966555543222
Q ss_pred eeeeeEEeccC
Q 010249 85 QFKTIVEYAPS 95 (514)
Q Consensus 85 e~~AiVEfAPY 95 (514)
.+..|++|--
T Consensus 169 -r~i~v~~~~~ 178 (261)
T 3sde_A 169 -RPVIVEPMEQ 178 (261)
T ss_dssp -CBCEEEECCC
T ss_pred -ceEEEeeccc
Confidence 3667777654
No 186
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.92 E-value=0.16 Score=39.86 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=50.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCC
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGV 84 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGn 84 (514)
.+..+|.|.+||+.+||+++.+.+..+ +.|.....+. + .-.-|||.|.+.+++. .+++..+.-. |
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~-~------~~g~afV~f~~~~~a~----~~~~~~~~~~-g- 67 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQY--GDVMDVFIPK-P------FRAFAFVTFADDQIAQ----SLCGEDLIIK-G- 67 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTT--SCCCEEECCS-S------CCSCCEEECSCHHHHH----HTTTCEEEET-T-
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc--CCeeEEEEec-C------CCCEEEEEECCHHHHH----HHhcCCceeC-C-
Confidence 466899999999999999999999875 3344433321 1 1245999999999885 3555543221 2
Q ss_pred eeeeeEEecc
Q 010249 85 QFKTIVEYAP 94 (514)
Q Consensus 85 e~~AiVEfAP 94 (514)
....|++|.
T Consensus 68 -~~l~v~~a~ 76 (88)
T 1wf0_A 68 -ISVHISNAE 76 (88)
T ss_dssp -EEEEEECCC
T ss_pred -EEEEEEecC
Confidence 355677664
No 187
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=94.75 E-value=0.09 Score=47.90 Aligned_cols=76 Identities=17% Similarity=0.207 Sum_probs=56.7
Q ss_pred CceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCee
Q 010249 7 RTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQF 86 (514)
Q Consensus 7 ~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne~ 86 (514)
..+|.|++||+.+||+++.+.+..+ +.|.....+.-. ...-.-|||.|.+.+++..-++.++|+.|.+ .
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~~~i~~d~----~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g-----~ 171 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAF--GNILSCKVVCDE----NGSKGYGFVHFETQEAAERAIEKMNGMLLND-----R 171 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEEET----TEEEEEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred cccceECCcccccHHHHHHHHHhhc--CCeEEEEeeccC----CCCceEEEEEeCCHHHHHHHHHHhCCCEECC-----E
Confidence 4689999999999999999999876 345443332211 1113459999999999999999999998732 2
Q ss_pred eeeEEec
Q 010249 87 KTIVEYA 93 (514)
Q Consensus 87 ~AiVEfA 93 (514)
.-.|++|
T Consensus 172 ~i~V~~a 178 (213)
T 4f02_A 172 KVFVGRF 178 (213)
T ss_dssp ECEEEEC
T ss_pred EEEEEEc
Confidence 5677876
No 188
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=93.74 E-value=0.0054 Score=50.98 Aligned_cols=82 Identities=15% Similarity=0.250 Sum_probs=55.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeE--------EEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCC
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNW--------VSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNG 75 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdw--------fyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG 75 (514)
..+..+|.|.+||+.+|++++.+.+..+- .|.. ...+..... .....-|||.|.+.+++...++.++|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~~~~~~~v~i~~~~~~--g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIG--IIKTNKKTGQPMINLYTDRET--GKLKGEATVSFDDPPSAKAAIDWFDG 79 (116)
Confidence 34668899999999999999998887652 2221 111111010 11124699999999999999999999
Q ss_pred CeeEeCCCCeeeeeEEecc
Q 010249 76 HVFVNEKGVQFKTIVEYAP 94 (514)
Q Consensus 76 ~vFvDsKGne~~AiVEfAP 94 (514)
+.|.+. ...|++|-
T Consensus 80 ~~~~g~-----~l~V~~a~ 93 (116)
T 2lcw_A 80 KEFSGN-----PIKVSFAT 93 (116)
Confidence 887532 45666653
No 189
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.67 E-value=0.074 Score=46.13 Aligned_cols=70 Identities=14% Similarity=0.100 Sum_probs=48.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhcccCC--cceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCee
Q 010249 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFG--GRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVF 78 (514)
Q Consensus 5 ~~~~KVVIRrLPP~LTEEeF~eqL~p~~~--gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vF 78 (514)
.+..+|.|++||...||+++.+.+..+-. +.+.-...+.-. .. ..-.-|||.|.+.+++..-++. +++.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~--~g-r~~G~aFV~F~~~~~A~~Al~~-~~~~l 92 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP--DG-RPTGDAFVLFACEEYAQNALRK-HKDLL 92 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT--TS-CEEEEEEECCSSHHHHHHHHTT-TTEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC--CC-CEeeEEEEEECCHHHHHHHHHh-CCCee
Confidence 45689999999999999999999887632 222322333221 11 1235699999999999988876 76544
No 190
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=94.43 E-value=0.069 Score=46.75 Aligned_cols=74 Identities=20% Similarity=0.343 Sum_probs=51.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccC--Cc-------ceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCC
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAF--GG-------RYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGH 76 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~--~g-------kvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~ 76 (514)
...+|.|++||+.+||+++.+.+..+. .+ .+..... |. .-.-|||.|.+.+++.... .++|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~--~~------~~g~afV~F~~~~~A~~Al-~l~g~ 73 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI--NQ------DKNFAFLEFRSVDETTQAM-AFDGI 73 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE--ET------TTTEEEEEESCSHHHHHHG-GGTTE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe--cC------CCCEEEEEeCCHHHHHHHH-HhcCC
Confidence 457899999999999999999888651 01 2222121 11 1256999999999999999 89998
Q ss_pred eeEeCCCCeeeeeEEec
Q 010249 77 VFVNEKGVQFKTIVEYA 93 (514)
Q Consensus 77 vFvDsKGne~~AiVEfA 93 (514)
.|.+ ....|+++
T Consensus 74 ~~~g-----~~i~v~~~ 85 (198)
T 2yh0_A 74 IFQG-----QSLKIRRP 85 (198)
T ss_dssp EETT-----EEEEEECC
T ss_pred EEcC-----ceEEEeCC
Confidence 8732 24556654
No 191
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=94.41 E-value=0.16 Score=44.45 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=48.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCccee-EEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCee
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYN-WVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVF 78 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvd-wfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vF 78 (514)
+....+|.|++||+..||+++.+.+..+ . -+. ....+..+. .. .-.-|||.|.+.+++...++. ++..|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~-i~~~~v~i~~d~~--Gr-srGfaFV~F~~~e~A~~Al~~-~~~~l 108 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-E-IVPNGITLPVDPE--GK-ITGEAFVQFASQELAEKALGK-HKERI 108 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-C-EEEEEEECCCCSS--SS-SCSEEEEEESSTTHHHHHHTT-TTCCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-C-ceeeEEEEEECCC--CC-CceEEEEEECCHHHHHHHHHH-CCCEE
Confidence 4567899999999999999999999986 2 221 323322221 11 125699999999999988875 55443
No 192
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=94.13 E-value=0.22 Score=50.79 Aligned_cols=80 Identities=13% Similarity=0.249 Sum_probs=64.7
Q ss_pred CCCCceEEEec--CCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeC
Q 010249 4 PLDRTKVVVRN--LPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNE 81 (514)
Q Consensus 4 p~~~~KVVIRr--LPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDs 81 (514)
..+..+|.|.+ |+.++||+++.+.++.+ |.|.-....++ -+.|||.|.+.++....++.++|..+.+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~--G~V~~v~~~~~--------kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 84 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKC--GLVDALLMPPN--------KPYSFARYRTTEESKRAYVTLNGKEVVDD 84 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTT--SCEEEEECCTT--------CSEEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhc--CCeEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCccccc
Confidence 45667899999 57899999999999986 45665555442 27999999999999999999999999888
Q ss_pred CCCeeeeeEEec
Q 010249 82 KGVQFKTIVEYA 93 (514)
Q Consensus 82 KGne~~AiVEfA 93 (514)
.|......|.|+
T Consensus 85 ~g~~~~ly~~~~ 96 (345)
T 3tht_A 85 LGQKITLYLNFV 96 (345)
T ss_dssp TSCEEECEEEEC
T ss_pred cCCceEEEEEEe
Confidence 787555566666
No 193
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=94.03 E-value=0.3 Score=45.00 Aligned_cols=79 Identities=15% Similarity=0.098 Sum_probs=61.4
Q ss_pred CCceEEEecCC-CCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCC
Q 010249 6 DRTKVVVRNLP-PAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGV 84 (514)
Q Consensus 6 ~~~KVVIRrLP-P~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGn 84 (514)
+...|.|.+|| +.+||+++.+.+..+ |.|.....+..+ -.-|||.|.+.++...-++.++|+.|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~--G~v~~v~i~~~~-------~g~afV~f~~~~~A~~Ai~~lng~~~~g---- 69 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLY--GNVEKVKFMKSK-------PGAAMVEMADGYAVDRAITHLNNNFMFG---- 69 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTT--SCEEEEEECTTS-------TTCEEEEESSHHHHHHHHHHHTTCEETT----
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhc--CCeEEEEEecCC-------CCEEEEEECCHHHHHHHHHHhCCCEECC----
Confidence 56789999999 699999999999875 456554444321 2459999999999999999999998854
Q ss_pred eeeeeEEeccCCCC
Q 010249 85 QFKTIVEYAPSQRV 98 (514)
Q Consensus 85 e~~AiVEfAPYQKv 98 (514)
..-.|+||-.+.+
T Consensus 70 -~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 70 -QKMNVCVSKQPAI 82 (205)
T ss_dssp -EECEEEECSCSCC
T ss_pred -ceEEEEEccCCcc
Confidence 3567888866553
No 194
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=93.85 E-value=0.14 Score=43.32 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=57.0
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCe
Q 010249 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQ 85 (514)
Q Consensus 6 ~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne 85 (514)
...-|+||+|+|..||+.+++.+..+ |.|..+.++. .-.-|+|.|.+.++...-++.+++..+.+.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~--G~V~~~~l~~--------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr---- 71 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQH--GPLVSFHPYL--------NQGIALCKYTTREEANKAQMALNNCVLANT---- 71 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHH--SCEEEEEEET--------TTTEEEEEESSHHHHHHHHHHHTTEEETTE----
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhh--CCEEEEEEcC--------CCcEEEEEECCHHHHHHHHHHhcCCEECCc----
Confidence 34678999999999999999999876 3466666543 247899999999999999999999776432
Q ss_pred eeeeEEec
Q 010249 86 FKTIVEYA 93 (514)
Q Consensus 86 ~~AiVEfA 93 (514)
.-.|++|
T Consensus 72 -~I~V~~A 78 (89)
T 2wbr_A 72 -TIFAESP 78 (89)
T ss_dssp -EEEEECC
T ss_pred -EEEEEEC
Confidence 3455555
No 195
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=93.71 E-value=0.34 Score=41.25 Aligned_cols=77 Identities=16% Similarity=0.099 Sum_probs=57.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCC
Q 010249 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK 82 (514)
Q Consensus 3 ~p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsK 82 (514)
.+.+..+|.|.+| .+||+++.+.+..+- .|...... ..-.-|||.|.+.+++...++.++|+.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G--~I~~v~i~--------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~--- 99 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFG--NIIDLSMD--------PPRNCAFVTYEKMESADQAVAELNGTQVE--- 99 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTC--CCSCEEEE--------TTTTEEEEECSSHHHHHHHHHHHTTCBCS---
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccC--CEEEEEEe--------CCCCEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 3567789999996 699999999998752 34333332 11246999999999999999999999883
Q ss_pred CCeeeeeEEeccCC
Q 010249 83 GVQFKTIVEYAPSQ 96 (514)
Q Consensus 83 Gne~~AiVEfAPYQ 96 (514)
| ....|+||--+
T Consensus 100 g--~~l~V~~a~~~ 111 (121)
T 2bz2_A 100 S--VQLKVNIARKQ 111 (121)
T ss_dssp S--CBCEEEECCSS
T ss_pred C--eEEEEEEeCCC
Confidence 2 35678887544
No 196
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=92.60 E-value=0.071 Score=47.26 Aligned_cols=69 Identities=14% Similarity=0.075 Sum_probs=48.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeE
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFV 79 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFv 79 (514)
+....+|.|++||+..||+++.+.+..+- +.....+.-+. . ..-.-|||.|.+.+++...+ .++++.|-
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G---i~~v~i~~d~~--g-~srGfaFV~F~~~e~A~~Al-~~~g~~l~ 111 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN---PVRVHIEIGPD--G-RVTGEADVEFATHEEAVAAM-SKDRANMQ 111 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC---CSEEECCCSSS--S-CSSCCCEEECSHHHHHHHHT-TCCSCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC---CeEEEEEECCC--C-CCceEEEEEeCCHHHHHHHH-hhCCCEEC
Confidence 45678999999999999999999998753 22222222111 1 11245999999999999888 66776653
No 197
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=91.42 E-value=0.31 Score=47.34 Aligned_cols=80 Identities=10% Similarity=0.189 Sum_probs=61.9
Q ss_pred CCceEEEecCCCCC---------CHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCC
Q 010249 6 DRTKVVVRNLPPAI---------TQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGH 76 (514)
Q Consensus 6 ~~~KVVIRrLPP~L---------TEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~ 76 (514)
...+|-|.+||+.+ ||+++.+.+..+ |.|.....++. -.-|||.|.+.+++..-++.++|.
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~~~--------kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYVES--------KNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEEGG--------GTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEECC--------CCEEEEEeCCHHHHHHHHHHhCCC
Confidence 56789999999998 799999999876 45776666642 256999999999999999999999
Q ss_pred eeE-------eCCCCeeeeeEEeccC
Q 010249 77 VFV-------NEKGVQFKTIVEYAPS 95 (514)
Q Consensus 77 vFv-------DsKGne~~AiVEfAPY 95 (514)
.|. |.++.-....|.||--
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred EEeccccccccccCCCCEEEEEEccC
Confidence 983 2222334678888843
No 198
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.88 E-value=2.2 Score=35.19 Aligned_cols=78 Identities=14% Similarity=0.214 Sum_probs=52.8
Q ss_pred CCCCCceEEEecC--CCCCC---------HHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHH
Q 010249 3 GPLDRTKVVVRNL--PPAIT---------QPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAE 71 (514)
Q Consensus 3 ~p~~~~KVVIRrL--PP~LT---------EEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~ 71 (514)
.|.+..-|+|++| |+.|. |+++.+.+..+ |.|... ++.-+ ..-.-|||.|.+.+++..-++
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v-~i~~~-----~~~G~afV~f~~~~~A~~Ai~ 82 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKL-LLFDR-----HPDGVASVSFRDPEEADYCIQ 82 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEE-EEETT-----CTTCEEEEECSCHHHHHHHHH
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEE-EEecC-----CCCEEEEEEECCHHHHHHHHH
Confidence 3566677999999 44332 45666666544 345444 33211 124579999999999999999
Q ss_pred HhCCCeeEeCCCCeeeeeEEec
Q 010249 72 FFNGHVFVNEKGVQFKTIVEYA 93 (514)
Q Consensus 72 ~fdG~vFvDsKGne~~AiVEfA 93 (514)
.++|+.|- | ....|+||
T Consensus 83 ~lng~~~~---g--r~l~v~~a 99 (112)
T 2dit_A 83 TLDGRWFG---G--RQITAQAW 99 (112)
T ss_dssp HSTTCEET---T--EECEEEEC
T ss_pred HcCCCEEC---C--cEEEEEEe
Confidence 99999883 2 35678876
No 199
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.21 E-value=0.79 Score=39.35 Aligned_cols=71 Identities=18% Similarity=0.303 Sum_probs=54.8
Q ss_pred EEEecCCCCCCHHHHHHHhcccC--C-cceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCee
Q 010249 10 VVVRNLPPAITQPAFTEQIDGAF--G-GRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQF 86 (514)
Q Consensus 10 VVIRrLPP~LTEEeF~eqL~p~~--~-gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne~ 86 (514)
|-|++||-.++++++...|..++ . |+|-.. -| ..|||.|.+.++...-.+.++|..|.+.
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V---tg---------G~AfV~F~~~esA~~A~~~l~G~~l~gr----- 74 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI---TG---------CSAILRFINQDSAERAQKRMENEDVFGN----- 74 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC---CT---------TCEEEEESSHHHHHHHHHHHTTCCSSSS-----
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE---ec---------CEEEEEECCHHHHHHHHHHhcCCccCCc-----
Confidence 55999999999999877666554 2 344322 12 8999999999999999999999987654
Q ss_pred eeeEEeccCCC
Q 010249 87 KTIVEYAPSQR 97 (514)
Q Consensus 87 ~AiVEfAPYQK 97 (514)
+-.|.||+...
T Consensus 75 ~i~v~~A~~~s 85 (96)
T 2diu_A 75 RIIVSFTPKNR 85 (96)
T ss_dssp CCEEESSCCSC
T ss_pred eEEEEecCCCc
Confidence 56788887654
No 200
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=89.42 E-value=1.3 Score=40.44 Aligned_cols=62 Identities=16% Similarity=0.238 Sum_probs=45.9
Q ss_pred ceEEEecCCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhC
Q 010249 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFN 74 (514)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fd 74 (514)
.+|.|++||+..|++++.+.+..+ |.|......... . ...-.-|||.|.+.+++....+..+
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~-~--~~~kG~aFVeF~~~e~A~~A~~~~~ 171 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDK--GQVLNIQMRRTL-H--KAFKGSIFVVFDSIESAKKFVETPG 171 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTS--CCEEEEEEEECT-T--CCEEEEEEEEESSHHHHHHHHHCTT
T ss_pred CEEEecCCCCcCCHHHHHHHHhcC--CCEEEEEEEECC-C--CCcccEEEEEECCHHHHHHHHHhCC
Confidence 579999999999999999999875 345544433322 1 1223569999999999999887653
No 201
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=88.70 E-value=5.6 Score=33.11 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=55.5
Q ss_pred CCCceEEEecCCC--CC---CHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeE
Q 010249 5 LDRTKVVVRNLPP--AI---TQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFV 79 (514)
Q Consensus 5 ~~~~KVVIRrLPP--~L---TEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFv 79 (514)
.+..-|+|++|.. .| +++++.+.+..+ |.|.......-... ....-..|||.|.+.++...-++.++|+.|-
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~--G~V~~v~i~~~~~~-~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~ 82 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKY--GKVGKCVIFEIPGA-PDDEAVRIFLEFERVESAIKAVVDLNGRYFG 82 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGG--SCEEEEEEEECSSC-CTTTSEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc--CCEEEEEEecCCCC-CCCCcEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4556799999962 23 577777777654 34544333221111 1122478999999999999999999999993
Q ss_pred eCCCCeeeeeEEeccC
Q 010249 80 NEKGVQFKTIVEYAPS 95 (514)
Q Consensus 80 DsKGne~~AiVEfAPY 95 (514)
| -.-.|+||+-
T Consensus 83 ---G--r~i~v~~a~~ 93 (105)
T 2pe8_A 83 ---G--RVVKACFYNL 93 (105)
T ss_dssp ---T--EECEEEECCH
T ss_pred ---C--cEEEEEEcCH
Confidence 2 3567888754
No 202
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=86.62 E-value=1.3 Score=36.95 Aligned_cols=86 Identities=12% Similarity=0.229 Sum_probs=52.3
Q ss_pred CCceEEEecC--CCCCCHHHHH----HHhcccC--CcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCe
Q 010249 6 DRTKVVVRNL--PPAITQPAFT----EQIDGAF--GGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHV 77 (514)
Q Consensus 6 ~~~KVVIRrL--PP~LTEEeF~----eqL~p~~--~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~v 77 (514)
|-.=|||+++ |-.|.+++.+ +.|...+ -|.|.-..-..............|||.|.+.++...-++.++|..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3345789998 6667654322 2222222 245554332221111112345789999999999999999999999
Q ss_pred eEeCCCCeeeeeEEeccCC
Q 010249 78 FVNEKGVQFKTIVEYAPSQ 96 (514)
Q Consensus 78 FvDsKGne~~AiVEfAPYQ 96 (514)
|- | -.-.|+|++-.
T Consensus 84 f~---G--R~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FA---N--RVVVTKYCDPD 97 (105)
T ss_dssp ET---T--EECEEEEECHH
T ss_pred eC---C--CEEEEEEeCHH
Confidence 93 2 35677777643
No 203
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=82.69 E-value=0.95 Score=37.62 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=31.5
Q ss_pred cceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCeeeeeEEecc
Q 010249 52 SCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAP 94 (514)
Q Consensus 52 ~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne~~AiVEfAP 94 (514)
....|||.|.+.++...-.+.++|+.|-. -.-.|+|+|
T Consensus 67 ~~G~~fV~f~~~~~A~~A~~~lng~~~~G-----r~i~v~~sp 104 (104)
T 1jmt_A 67 LVGNVYVKFRREEDAEKAVIDLNNRWFNG-----QPIHAELSP 104 (104)
T ss_dssp SEEEEEEEESCHHHHHHHHHHHTTCEETT-----EECCEEECC
T ss_pred ccEEEEEEECCHHHHHHHHHHHCCCEECC-----EEEEEEEcC
Confidence 35789999999999999999999998743 255788887
No 204
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.28 E-value=5.5 Score=34.77 Aligned_cols=59 Identities=24% Similarity=0.268 Sum_probs=42.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcc---cCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHH
Q 010249 4 PLDRTKVVVRNLPPAITQPAFTEQIDG---AFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEF 72 (514)
Q Consensus 4 p~~~~KVVIRrLPP~LTEEeF~eqL~p---~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~ 72 (514)
..-+.+|.|+.|||.+.++-+.--+.. ...|.|....|.+ ..|+|.|.+.+.+......
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----------~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----------CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----------TEEEEEESSHHHHHHHHTC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----------CcEEEEEcChHHHHHHhcC
Confidence 346789999999999998755444444 2345566555543 6789999999988777655
No 205
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=73.06 E-value=8.9 Score=34.85 Aligned_cols=67 Identities=10% Similarity=0.076 Sum_probs=44.5
Q ss_pred ceEEEecC----CCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCC----hhh----HHHHHH--Hh
Q 010249 8 TKVVVRNL----PPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKK----PED----VLEFAE--FF 73 (514)
Q Consensus 8 ~KVVIRrL----PP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn----~Ed----l~~F~~--~f 73 (514)
++|||.+| |+..||+++.+.+..+ |.|..+..+-...+-.+ -.-|.|.|.+ +++ ....+. .+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~f--GeV~~~~li~Dp~Tg~s--lGfgfVef~d~~g~~d~a~kAA~kAi~~~~l 78 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKY--GEISHFEAFNDPNSALP--LHVYLIKYASSDGKINDAAKAAFSAVRKHES 78 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTT--SCCSEEEEEECTTTCCE--EEEEEEECC------CCHHHHHHHHHHHTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCCCce--eeEEEEEECCCCCCcchHHHHHHHHHHHhhh
Confidence 79999999 9999999999999965 35666665544443211 3568899986 444 556655 33
Q ss_pred CCCee
Q 010249 74 NGHVF 78 (514)
Q Consensus 74 dG~vF 78 (514)
+|+.|
T Consensus 79 ng~~I 83 (136)
T 2j8a_A 79 SGCFI 83 (136)
T ss_dssp TCEEE
T ss_pred cCCee
Confidence 44443
No 206
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=71.08 E-value=9.5 Score=32.62 Aligned_cols=83 Identities=23% Similarity=0.332 Sum_probs=49.8
Q ss_pred CCceEEEecCC--CCCC---HHHHHHHhcccCCcceeEEEeecCCCCC--CCCcceEEEEEcCChhhHHHHHHHhCCCee
Q 010249 6 DRTKVVVRNLP--PAIT---QPAFTEQIDGAFGGRYNWVSFRQGKTSQ--KHQSCARAYLDFKKPEDVLEFAEFFNGHVF 78 (514)
Q Consensus 6 ~~~KVVIRrLP--P~LT---EEeF~eqL~p~~~gkvdwfyFVpGk~S~--Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vF 78 (514)
+..=|+|+++- -.|. ++++.+.+..+ |.|....-+.-..+. ....-..+||.|.+.++...-++.++|..|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~--G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF--GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT--SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 34557889983 3333 34444444432 344432222111110 112336799999999999999999999998
Q ss_pred EeCCCCeeeeeEEeccC
Q 010249 79 VNEKGVQFKTIVEYAPS 95 (514)
Q Consensus 79 vDsKGne~~AiVEfAPY 95 (514)
- | -.-.|+|++-
T Consensus 97 ~---G--R~i~v~~~~~ 108 (118)
T 3ue2_A 97 A---G--RKVVAEVYDQ 108 (118)
T ss_dssp T---T--EECEEEEECH
T ss_pred C---C--cEEEEEEcCh
Confidence 3 2 2566777764
No 207
>2xb2_G Regulator of nonsense transcripts 3B; EXON junction complex, nonsense-mediated mRNA decay, translation, UPF3B, hydrolase; HET: ANP; 3.40A {Homo sapiens}
Probab=59.62 E-value=4.1 Score=32.51 Aligned_cols=18 Identities=39% Similarity=0.608 Sum_probs=16.5
Q ss_pred HHhhhccCCCCCCccccc
Q 010249 383 QERRTRNKDRPDRAAWTL 400 (514)
Q Consensus 383 ~er~tRnkDRpdrgvw~p 400 (514)
.++|.||||||---++-|
T Consensus 4 ~~~rirnKDRP~~qiYqP 21 (60)
T 2xb2_G 4 KRDRIRNKDRPAMQLYQP 21 (60)
T ss_pred HhhhhhhcCCceeeeeCC
Confidence 478999999999999999
No 208
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=54.17 E-value=53 Score=27.80 Aligned_cols=81 Identities=12% Similarity=0.216 Sum_probs=50.8
Q ss_pred CCCCceEEEecCCC--CCC----HHHHHHHhcccC--CcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCC
Q 010249 4 PLDRTKVVVRNLPP--AIT----QPAFTEQIDGAF--GGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNG 75 (514)
Q Consensus 4 p~~~~KVVIRrLPP--~LT----EEeF~eqL~p~~--~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG 75 (514)
|.+-.=|||+++=- .|. .+++.+.|...+ -|.|.-. +++-. .....+||.|.+.++...-++.++|
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v-~i~~~-----~~~G~~fV~f~~~e~A~~Ai~~lnG 77 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHI-YVDKN-----SAQGNVYVKCPSIAAAIAAVNALHG 77 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEE-EECTT-----CTTCCEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEE-EEecC-----CCcEEEEEEECCHHHHHHHHHHhCC
Confidence 44555688888733 232 244444444443 2344432 23211 1257799999999999999999999
Q ss_pred CeeEeCCCCeeeeeEEeccC
Q 010249 76 HVFVNEKGVQFKTIVEYAPS 95 (514)
Q Consensus 76 ~vFvDsKGne~~AiVEfAPY 95 (514)
..|- | -.-.|+|++-
T Consensus 78 ~~f~---G--R~i~v~~~~~ 92 (114)
T 3s6e_A 78 RWFA---G--KMITAAYVPL 92 (114)
T ss_dssp CEET---T--EECEEEEECH
T ss_pred CEEC---C--EEEEEEEEcH
Confidence 9983 2 2567888763
No 209
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.32 E-value=78 Score=26.14 Aligned_cols=62 Identities=5% Similarity=-0.060 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeCCCCeeeeeEEecc
Q 010249 17 PAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAP 94 (514)
Q Consensus 17 P~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDsKGne~~AiVEfAP 94 (514)
+.+||+++.+.+..+- .|..... .+ ..-.-|||.|.+.+++...++..++. .| .+..|+||-
T Consensus 27 ~~~te~~L~~~F~~~G--~V~~v~i-~~------~~rGfaFVeF~~~~~A~~Ai~~~~~~-----~g--~~l~V~~a~ 88 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYG--EVLNLVL-SS------KKPGTAVVEFATVKAAELAVQNEVGL-----VD--NPLKISWLE 88 (100)
T ss_dssp CSCCHHHHHHHHHTTS--CEEEEEE-ES------SSSSEEEEEESCHHHHHHHHHTCCBC-----SS--SBCEEECSS
T ss_pred CCCCHHHHHHHHHhcC--CEEEEEE-cc------CCCCEEEEEECCHHHHHHHHHhcCCC-----CC--CeEEEEEcc
Confidence 6799999999998763 4555443 33 12356999999999998888774442 12 245677763
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=43.85 E-value=20 Score=31.16 Aligned_cols=70 Identities=10% Similarity=0.181 Sum_probs=49.0
Q ss_pred CceEEEecCCCCC-CHH----HHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCeeEeC
Q 010249 7 RTKVVVRNLPPAI-TQP----AFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNE 81 (514)
Q Consensus 7 ~~KVVIRrLPP~L-TEE----eF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vFvDs 81 (514)
..-|+|-+||+.+ ..+ +|.+.+... ...+.|.+| ..+-|+-|+|.++++...-+..+++..|.+.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~-~~~~tF~~l---------kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~ 74 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTY-DKDTTFQYF---------KSFKRVRINFSNPLSAADARLRLHKTEFLGK 74 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTT-CSSCEEEEE---------TTTTEEEEECSSTTHHHHHHHTSTTSEETTE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhh-CcCcceeec---------CcceEEEEEeCChHHHHHHHHHhccceecCc
Confidence 4568999998865 433 444444432 333456554 1256999999999999999999999999876
Q ss_pred CCCee
Q 010249 82 KGVQF 86 (514)
Q Consensus 82 KGne~ 86 (514)
+=..|
T Consensus 75 ~~r~Y 79 (104)
T 1wey_A 75 EMKLY 79 (104)
T ss_dssp ECEEE
T ss_pred eeEEE
Confidence 43333
No 211
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=34.18 E-value=70 Score=25.89 Aligned_cols=52 Identities=13% Similarity=0.230 Sum_probs=30.3
Q ss_pred EEecCCCCCCHHHHHHHhcccC-C---cceeEEEeecCCCCCCCCcceEEEEEcCC
Q 010249 11 VVRNLPPAITQPAFTEQIDGAF-G---GRYNWVSFRQGKTSQKHQSCARAYLDFKK 62 (514)
Q Consensus 11 VIRrLPP~LTEEeF~eqL~p~~-~---gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn 62 (514)
.|..|.|+||.++....|+... . +.-.|.|-..=..........+..|.|.+
T Consensus 9 ~~~~i~~GmTk~qV~~lLG~P~~~~~f~~~~W~Yv~~~~~g~~~~~~~~l~V~Fd~ 64 (88)
T 2yh9_A 9 DVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNS 64 (88)
T ss_dssp -CTTCCTTCBHHHHHHHHCSCSEECCTTCSEEEEECCSCTTCCSSSCCEEEEEECT
T ss_pred HHHhccCCCCHHHHHHHcCCCcccccccCCeEEEEEEeecCCCCcEEEEEEEEEcC
Confidence 4678999999999999999532 1 11235332221111123445667777764
No 212
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.60 E-value=58 Score=27.82 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=40.7
Q ss_pred CceEEEecCCCCCCH-----HHHHHHhcccC--CcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCee
Q 010249 7 RTKVVVRNLPPAITQ-----PAFTEQIDGAF--GGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVF 78 (514)
Q Consensus 7 ~~KVVIRrLPP~LTE-----EeF~eqL~p~~--~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vF 78 (514)
.--|||..||+...| ++|+..|-..+ -|.+.-..|+-++ ++|.|.+.+.+..-++ ++|..+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----------EEEEEcChHHHHHHHh-cCCeee
Confidence 356899999976332 22223233222 1345566777665 9999999999988887 998765
No 213
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.47 E-value=85 Score=26.51 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=42.2
Q ss_pred CceEEEecCC----CCCCHHHHHHHhcccC--CcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHhCCCee
Q 010249 7 RTKVVVRNLP----PAITQPAFTEQIDGAF--GGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVF 78 (514)
Q Consensus 7 ~~KVVIRrLP----P~LTEEeF~eqL~p~~--~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~fdG~vF 78 (514)
.--|||..+| .+.-.++|...|-..+ -|.+.-..|+-++ ++|.|.+.+....-++ ++|..+
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----------~fVtF~d~~sAlaAi~-mnG~~v 73 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----------MWVTFLEGSSALNVLS-LNGKEL 73 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----------EEEEESSHHHHHHGGG-GTTCEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----------EEEEECChHHHHHHHh-cCCeEe
Confidence 3458888888 3444444544444433 2456667777765 8999999999988888 998853
No 214
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=23.02 E-value=2e+02 Score=25.66 Aligned_cols=64 Identities=17% Similarity=0.360 Sum_probs=36.9
Q ss_pred CCCceEEEec-----------CCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHh
Q 010249 5 LDRTKVVVRN-----------LPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFF 73 (514)
Q Consensus 5 ~~~~KVVIRr-----------LPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~f 73 (514)
.....||+|+ |-|.|+ +.+.....-.|...+.-+++...+.+--.=|.|++.|...+|.+.|
T Consensus 58 ~~k~RllmR~d~~~kv~lN~~i~~~m~-------~~~~~~s~k~~v~~~~~D~sdg~~~~~~~~iRfk~~e~A~~f~~~~ 130 (140)
T 4hat_B 58 TNKVRILMRRDKTLKICANHIIAPEYT-------LKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEF 130 (140)
T ss_dssp TCCEEEEEECTTTCCEEEEEECCTTCC-------CBCCTTCSSEEEEEEEEECTTSSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCeEEEEEEecCcceEEEEeEecCCeE-------EeEcCCCCceEEEEccccCCCCCCceEEEEEEECCHHHHHHHHHHH
Confidence 3456777776 566665 2222111122332223334443344455567899999999999988
Q ss_pred CC
Q 010249 74 NG 75 (514)
Q Consensus 74 dG 75 (514)
..
T Consensus 131 ee 132 (140)
T 4hat_B 131 EK 132 (140)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 215
>3gqq_A Protein UNC-119 homolog A; human retinal protein 4, HRG4, U119A_human, HR3066A, NESG, structural genomics, PSI-2, protein structure initiative; 1.95A {Homo sapiens} PDB: 3rbq_A*
Probab=22.44 E-value=51 Score=31.60 Aligned_cols=32 Identities=13% Similarity=0.264 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHhcccCCcceeEEEeecCCCCC
Q 010249 17 PAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQ 48 (514)
Q Consensus 17 P~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~ 48 (514)
|.|+++...+.|...|+-+-|.||||.+++=.
T Consensus 152 P~l~~~~i~emi~~P~et~SDSFYFVd~kLvM 183 (195)
T 3gqq_A 152 PPLSEELISEMIRHPYETQSDSFYFVDDRLVM 183 (195)
T ss_dssp CCCCHHHHHHHHHSTTCEEEEEEEEETTEEEE
T ss_pred CCCCHHHHHHHHhCCCccccceeEEECCEEEE
Confidence 88999988888888887777999999887643
No 216
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=20.34 E-value=2.4e+02 Score=26.71 Aligned_cols=64 Identities=17% Similarity=0.360 Sum_probs=36.8
Q ss_pred CCCceEEEec-----------CCCCCCHHHHHHHhcccCCcceeEEEeecCCCCCCCCcceEEEEEcCChhhHHHHHHHh
Q 010249 5 LDRTKVVVRN-----------LPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFF 73 (514)
Q Consensus 5 ~~~~KVVIRr-----------LPP~LTEEeF~eqL~p~~~gkvdwfyFVpGk~S~Kp~~ySRAYI~Fkn~Edl~~F~~~f 73 (514)
.....||+|+ |-|.|+ |.+.....-.|...+.-+++...+..--.=|.|++.+....|.+.|
T Consensus 109 t~k~RllMR~d~~~kV~LN~~I~~~m~-------~~~~~~sdks~v~~~~~D~sdge~k~e~~aIRFk~~E~A~eF~~~~ 181 (191)
T 3m1i_B 109 TNKVRILMRRDKTLKICANHIIAPEYT-------LKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEF 181 (191)
T ss_dssp TCCEEEEEECTTTCCEEEEEECCTTCC-------CBCCTTCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHH
T ss_pred CCeEEEEEEecCcceEEEeeecCCCcE-------EeECCCCCceEEEEecCcCCCCCcceEEEEEEECCHHHHHHHHHHH
Confidence 3457788886 566665 2222111112332322234433344445567899999999999988
Q ss_pred CC
Q 010249 74 NG 75 (514)
Q Consensus 74 dG 75 (514)
..
T Consensus 182 ee 183 (191)
T 3m1i_B 182 EK 183 (191)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 217
>2pxg_A Outer membrane protein; two layer alpha/beta plait, two layer sandwich architecture; NMR {Xanthomonas axonopodis PV}
Probab=20.01 E-value=1.6e+02 Score=25.41 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=17.5
Q ss_pred EecCCCCCCHHHHHHHhccc
Q 010249 12 VRNLPPAITQPAFTEQIDGA 31 (514)
Q Consensus 12 IRrLPP~LTEEeF~eqL~p~ 31 (514)
|..|-|+||.++....|+..
T Consensus 23 v~ql~~GMTk~QV~~lLGtP 42 (118)
T 2pxg_A 23 VEQLQVGQSKQQVSALLGTP 42 (118)
T ss_dssp TTTTCCCSCHHHHHHHHTSC
T ss_pred HHHccCCCCHHHHHHHcCCC
Confidence 46899999999999999863
Done!