BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010250
(514 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 350 bits (897), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 162/417 (38%), Positives = 252/417 (60%), Gaps = 2/417 (0%)
Query: 84 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTT 143
+V+ EG Y+ DVNG++YLD+ +GLW G L+ AA AQ P YH+F+ R +
Sbjct: 45 VVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMS 104
Query: 144 KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKS 203
++ L+++L+E+ + +VF+TNSGSEANDT VK++W+ + A G+P K+K + R +
Sbjct: 105 DQTVMLSEKLVEV-SPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNA 163
Query: 204 YHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDL 263
YHG T ++AS++G P + F LP P +H CPHYWRY GETEE++ RLA LE+
Sbjct: 164 YHGVTAVSASMTGKP-YNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEET 222
Query: 264 ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTM 323
I +EG +TIA F AE YF+ + +++KYDI I+DEVIC FGR G
Sbjct: 223 IQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNT 282
Query: 324 FGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPV 383
+GC Y PD + +K L++ + P+GA+++ PE+S+ + + + F HGFT SGHPV
Sbjct: 283 WGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPV 342
Query: 384 SCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKS 443
CA+A++A+ + + E V ++AP+F++ +K ++ P IGE RG G + E +K+
Sbjct: 343 GCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKA 402
Query: 444 PNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKAL 500
PF + C G++ R G ++++ PPFI++ ++DE+ K KAL
Sbjct: 403 SKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQMDEMFDKLEKAL 459
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 348 bits (893), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 161/417 (38%), Positives = 250/417 (59%), Gaps = 2/417 (0%)
Query: 84 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTT 143
+V+ EG Y+ DV+G++YLD+ +GLW G L+ AA AQ + P YH+F+ R +
Sbjct: 43 VVVTHGEGPYIVDVHGRRYLDANSGLWNMVAGFDHKGLIEAAKAQYDRFPGYHAFFGRMS 102
Query: 144 KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKS 203
++ L+++L+E+ + +VF+TNSGSEANDT VK++W+ + A G+P K+K + R +
Sbjct: 103 DQTVMLSEKLVEV-SPFDNGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNA 161
Query: 204 YHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDL 263
YHG T ++AS++G P + F LP P +H CPHYWRY GETE ++ RLA LED
Sbjct: 162 YHGVTAVSASMTGKP-YNSVFGLPLPGFIHLTCPHYWRYGEEGETEAQFVARLARELEDT 220
Query: 264 ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTM 323
I +EG +TIA F AE YF+ + +++KYDI I+DEVIC FGR G
Sbjct: 221 ITREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVICGFGRTGNT 280
Query: 324 FGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPV 383
+GC Y PD + + L++ + P+GA+++ P++++ + + + F HGFT SGHPV
Sbjct: 281 WGCLTYDFMPDAIISSXNLTAGFFPMGAVILGPDLAKRVEAAVEAIEEFPHGFTASGHPV 340
Query: 384 SCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKS 443
CA+A++A+ + + E V ++AP+F+ G+K +D P IGE RG G + E +K
Sbjct: 341 GCAIALKAIDVVMNEGLAENVRRLAPRFEAGLKRIADRPNIGEYRGIGFMWALEAVKDKP 400
Query: 444 PNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKAL 500
PF + C G++ R G +I++ PPFI++ ++DE+ K KAL
Sbjct: 401 TKTPFDANLSVSERIANTCTDLGLICRPLGQSIVLCPPFILTEAQMDEMFEKLEKAL 457
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 343 bits (879), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 163/417 (39%), Positives = 247/417 (59%), Gaps = 2/417 (0%)
Query: 84 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTT 143
+V+ EG Y+ DVNG++YLD+ +GLW G L+ AA AQ P YH+F+ R +
Sbjct: 51 VVVTHGEGPYIVDVNGRRYLDANSGLWNXVAGFDHKGLIDAAKAQYERFPGYHAFFGRXS 110
Query: 144 KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKS 203
++ L+++L+E+ + +VF+TNSGSEANDT VK +W+ + A G+P K+K + R +
Sbjct: 111 DQTVXLSEKLVEV-SPFDSGRVFYTNSGSEANDTXVKXLWFLHAAEGKPQKRKILTRWNA 169
Query: 204 YHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDL 263
YHG T ++AS +G P + F LP P +H CPHYWRY GETEE++ RLA LE+
Sbjct: 170 YHGVTAVSASXTGKP-YNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEET 228
Query: 264 ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTM 323
I +EG +TIA F AE YF+ + +++KYDI I+DEVIC FGR G
Sbjct: 229 IQREGADTIAGFFAEPVXGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNT 288
Query: 324 FGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPV 383
+GC Y PD + +K L++ + P GA+++ PE+S+ + + + F HGFT SGHPV
Sbjct: 289 WGCVTYDFTPDAIISSKNLTAGFFPXGAVILGPELSKRLETAIEAIEEFPHGFTASGHPV 348
Query: 384 SCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKS 443
CA+A++A+ + + E V ++AP+F++ +K ++ P IGE RG G E +K+
Sbjct: 349 GCAIALKAIDVVXNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFXWALEAVKDKA 408
Query: 444 PNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKAL 500
PF + C G++ R G ++++ PPFI++ + DE K KAL
Sbjct: 409 SKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQXDEXFDKLEKAL 465
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 336 bits (861), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 156/417 (37%), Positives = 250/417 (59%), Gaps = 2/417 (0%)
Query: 84 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTT 143
+V+ EG Y+ DVNG++YLD+ +GL+ G L+ AA AQ P YH+ + + +
Sbjct: 51 VVVTHGEGPYIVDVNGRRYLDANSGLFNMVAGFDHKGLIDAAKAQYERFPGYHAAFGKMS 110
Query: 144 KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKS 203
++ L+++L+E+ + +VF+TNSGSEANDT VK++W+ + A G+P K+K + R +
Sbjct: 111 DQTVMLSEKLVEV-SPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNA 169
Query: 204 YHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDL 263
YHG+T ++AS++G P + F LP P +H CPHYWRY GETEE++ RLA LE+
Sbjct: 170 YHGATAVSASMTGFP-YNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEET 228
Query: 264 ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTM 323
I +EG +TIA F AE YF+ + +++KYDI I+DEV+C FGR G
Sbjct: 229 IQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVVCGFGRTGNT 288
Query: 324 FGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPV 383
+GC Y PD + + L++ + P+GA+++ PE+S+ + + + F HGFT SGHPV
Sbjct: 289 WGCVTYDFTPDAIISSXNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPV 348
Query: 384 SCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKS 443
CA+A++A+ + + E V ++AP+F++ +K ++ P IGE RG G + E +K+
Sbjct: 349 GCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKA 408
Query: 444 PNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKAL 500
PF + C G++ G ++++ PPFI++ ++DE+ K KAL
Sbjct: 409 SKTPFDGNLSVSERIANTCTDLGLICFPLGQSVVLCPPFILTEAQMDEMFDKLEKAL 465
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 327 bits (837), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 167/419 (39%), Positives = 243/419 (57%), Gaps = 5/419 (1%)
Query: 89 SEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLD 148
EG V+D NG+K +D+ AGL+C +G ++ A Q L +YH++ T+ S+
Sbjct: 40 GEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASIT 99
Query: 149 LAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGST 208
LAK +++ ++V+F SGS+AN+T +KL+WYYNN LGRP KKK I+R + YHGS
Sbjct: 100 LAKXIIDR-APKGXSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSG 158
Query: 209 LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG 268
+ SL+GL H FDLP VLHT+ P+Y+R +EE++S A+ LE+ IL EG
Sbjct: 159 VXTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSXSEEQFSQHCADKLEEXILAEG 218
Query: 269 PETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDK 328
PETIAAFI E Y+EK+QAV+KKYD+L +ADEV+ FGRLGT FG D
Sbjct: 219 PETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTXFGSDH 278
Query: 329 YSIKPDLVSFA-KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 387
Y IKPDL++ A K L+SAY P+ ++V+ V +V+ S+ LGS HG+TYS HP+ A
Sbjct: 279 YGIKPDLITIAXKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAA 338
Query: 388 AIEALKIYKERNIVEQVNKIAPKFQ-DGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNE 446
+ L++ E ++V + F+ + KA +GE+RG G + EF +K
Sbjct: 339 GVANLELIDEXDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGXLAAVEFVADKDDRV 398
Query: 447 PFPPEWGIGAYFGAQCEKHGMLVRV--SGDNIMMSPPFIMSPEEVDELISKYGKALKAT 503
F IG G++ R GD + +PP ++ E+ D ++SK A+K+
Sbjct: 399 FFDASQKIGPQVATALAASGVIGRAXPQGDILGFAPPLCLTREQADIVVSKTADAVKSV 457
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 309 bits (792), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 161/424 (37%), Positives = 241/424 (56%), Gaps = 6/424 (1%)
Query: 85 VIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTK 144
VI+ + G ++ D +G K LD+ AGL+C +G + A Q L +YHS+ T+
Sbjct: 35 VIKTASGVFIEDRDGTKLLDAFAGLYCVNVGYGRQEIAEAIADQARELAYYHSYVGHGTE 94
Query: 145 PSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSY 204
S+ LAK +L+ +KV+F GS+AN+T VKL+WYYNN LGRP KKK I+R + Y
Sbjct: 95 ASITLAKXILDR-APKNXSKVYFGLGGSDANETNVKLIWYYNNILGRPEKKKIISRWRGY 153
Query: 205 HGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLI 264
HGS L+ SL+GL H+KFDLP V+HT+ P+Y+R +TEE++ LE LI
Sbjct: 154 HGSGLVTGSLTGLELFHKKFDLPVEQVIHTEAPYYFRREDLNQTEEQFVAHCVAELEALI 213
Query: 265 LKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTMF 324
+EG +TIAAFI E Y+E +Q V+ K+DIL +ADEV+ FGRLGT F
Sbjct: 214 EREGADTIAAFIGEPILGTGGIVPPPAGYWEAIQTVLNKHDILLVADEVVTGFGRLGTXF 273
Query: 325 GCDKYSIKPDLVSFA-KALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPV 383
G D Y ++PD+++ A K L+SAY P+ +VS +V +V+ ++ G HG+TYS HP+
Sbjct: 274 GSDHYGLEPDIITIAXKGLTSAYAPLSGSIVSDKVWKVLEQGTDENGPIGHGWTYSAHPI 333
Query: 384 SCAVAIEALKIYKERNIVEQVNKIAPKFQ-DGVKAFSDSPIIGEIRGTGLILGTEFADNK 442
A + LK+ E N+V ++ +A S +G++RG GL+ EF ++
Sbjct: 334 GAAAGVANLKLLDELNLVSNAGEVGAYLNATXAEALSQHANVGDVRGEGLLCAVEFVKDR 393
Query: 443 SPNEPFPPEWGIGAYFGAQ-CEKHGMLVRV--SGDNIMMSPPFIMSPEEVDELISKYGKA 499
F IG A+ E+ ++ R GD + +PPF ++ E D+++ +A
Sbjct: 394 DSRTFFDAADKIGPQISAKLLEQDKIIARAXPQGDILGFAPPFCLTRAEADQVVEGTLRA 453
Query: 500 LKAT 503
+KA
Sbjct: 454 VKAV 457
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 302 bits (774), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 161/444 (36%), Positives = 255/444 (57%), Gaps = 12/444 (2%)
Query: 69 LAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQ 128
L PF+A + VI ++ G ++ D G++ LD++AGLWC +G L A Q
Sbjct: 24 LHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQ 83
Query: 129 LNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNA 188
+ LP+Y++F+ T P++ LA++L E+ + VFF GSEANDT +++V Y
Sbjct: 84 MRELPYYNTFFKTTHVPAIALAQKLAEL-APGDLNHVFFAGGGSEANDTNIRMVRTYWQN 142
Query: 189 LGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGET 248
G+P K I+R+ +YHGST+ +++L G+ +H + L P V H + P++W A G+
Sbjct: 143 KGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGL-IPDVHHINQPNWW--AEGGDM 199
Query: 249 E-EEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDIL 307
+ EE+ A LE+ IL+ G +AAFIAE +Y+ ++Q + KYDIL
Sbjct: 200 DPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDIL 259
Query: 308 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 367
IADEVIC FGR G FG I+P +++ AK LSS Y PIG +V EV+ VI
Sbjct: 260 LIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKD-- 317
Query: 368 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKI-APKFQDGVKAFSDSPIIGE 426
F+HG+TYSGHPV+ AVA+E L+I +E NI++ V + AP ++ +A +D P++GE
Sbjct: 318 ---EFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGE 374
Query: 427 IRGTGLILGTEFADNKSPNEPFPPEWG-IGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMS 485
+ G++ NK+ F E G IG +C + +++R GD +++SPP +++
Sbjct: 375 AKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVGDRMIISPPLVIT 434
Query: 486 PEEVDELISKYGKALKATEERVKE 509
P E+DE+ + K+L + +++
Sbjct: 435 PAEIDEMFVRIRKSLDEAQAEIEK 458
>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6R|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6T|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6U|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A6U|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A72|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4AH3|A Chain A, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|B Chain B, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|C Chain C, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|D Chain D, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
Length = 459
Score = 290 bits (741), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 162/443 (36%), Positives = 247/443 (55%), Gaps = 10/443 (2%)
Query: 69 LAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQ 128
L PFT V+ + EG Y++D G K +D +AGLWC +G AA Q
Sbjct: 19 LHPFTDTASLNQAGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQ 78
Query: 129 LNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNA 188
+ LPFY++F+ +TT P++ LL T + +VF+TNSGSE+ DT +++V Y +
Sbjct: 79 MEELPFYNTFF-KTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDV 137
Query: 189 LGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE- 247
G+P KK I R YHGST+ ASL G+ +H++ DLP P + H + P W Y H +
Sbjct: 138 QGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQP--WWYKHGKDM 195
Query: 248 TEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDIL 307
T +E+ A LE+ IL+ G + +AAF+ E TY+ +++ + +KYD+L
Sbjct: 196 TPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVL 255
Query: 308 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 367
+ADEVIC FGR G FG + +PDL + AK LSS Y+PIGA+ V V+E + +
Sbjct: 256 LVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAG-- 313
Query: 368 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQV-NKIAPKFQDGVK-AFSDSPIIG 425
G F+HGFTYSGHPV AVA + ++ IV++V + I P Q + FS +
Sbjct: 314 --GDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVD 371
Query: 426 EIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMS 485
++RG G++ NK+ E FP IG ++ +++R GD+I+ +PP +M+
Sbjct: 372 DVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACGDHIVSAPPLVMT 431
Query: 486 PEEVDELISKYGKALKATEERVK 508
EVDE+++ + L+ E+ +K
Sbjct: 432 RAEVDEMLAVAERCLEEFEQTLK 454
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 242 bits (618), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/423 (32%), Positives = 225/423 (53%), Gaps = 17/423 (4%)
Query: 85 VIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTK 144
V+ +EG YV+ +G++ +D AG+WC +G +V A Q LP Y S W T
Sbjct: 39 VLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLP-YASPWYMATS 97
Query: 145 PSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSY 204
P+ LA E + T + ++FFT GS A D+ ++ +YNN LGRP KK+ I R Y
Sbjct: 98 PAARLA-EKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGY 156
Query: 205 HGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLI 264
HGST + A+ +G FD+ + P+ R+A ++E + L ED I
Sbjct: 157 HGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNP-RHAG-NRSQEAFLDDLVQEFEDRI 214
Query: 265 LKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTMF 324
GP+TIAAF+AE Y + +A+ +K+DIL+I+DEV+ FGR G F
Sbjct: 215 ESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWF 274
Query: 325 GCDK-YSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPV 383
+K + + PD+++FAK ++S Y+P+G + +S V I ++ F++G+TYS PV
Sbjct: 275 ASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPV 334
Query: 384 SCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLI------LGTE 437
+CA A+ +++ + IV+Q ++A F + + D P + E R GL+ L
Sbjct: 335 ACAAALANIELMEREGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPT 394
Query: 438 FADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYG 497
AD + ++ F + +C + G++VR GD ++SPP I+S ++DE+++
Sbjct: 395 RADGTAEDKAFTLK------IDERCFELGLIVRPLGDLCVISPPLIISRAQIDEMVAIMR 448
Query: 498 KAL 500
+A+
Sbjct: 449 QAI 451
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/439 (30%), Positives = 221/439 (50%), Gaps = 23/439 (5%)
Query: 71 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 130
PFT + D +PL+IE G V D+NGK+Y D + +W G + L A QL
Sbjct: 16 PFTQ-MKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLG 74
Query: 131 TLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 190
+ + + T P+ LA+ L+++ + K+ +VF+++SG+EA + +K+ + Y +G
Sbjct: 75 KIA-HSTLLGMTNVPATQLAETLIDI-SPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIG 132
Query: 191 RPNKKKFIARQKSYHGSTLIAASLSGL--------PALHQKFDLPAPFVLHTDCPHYWRY 242
+P K+KFIA + YHG T+ A S+ + P + + + P P+V ++
Sbjct: 133 KPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSES------ 186
Query: 243 AHPGETEEEYSTRLANNLEDLILKEGPETIAAF-IAEXXXXXXXXXXXXXTYFEKVQAVV 301
P E ++ LA +L+E E IAA I Y V+ +
Sbjct: 187 GDPDECRDQXLRELAQ-----LLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELC 241
Query: 302 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEV 361
YD+L I DEV FGR G MF C+ +++PDL++ K ++ Y+PI + ++ +
Sbjct: 242 TTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKA 301
Query: 362 IHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS 421
+ L +F HG +Y+G+ + CAVA+E L +++ NIVEQV + + K ++
Sbjct: 302 FYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHAL 361
Query: 422 PIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPP 481
P +G+IR G + G E +K EP+P + IG + + GML R GD I PP
Sbjct: 362 PHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFLPP 421
Query: 482 FIMSPEEVDELISKYGKAL 500
+ EE+ E+++ +A+
Sbjct: 422 LASTAEELSEMVAIMKQAI 440
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/439 (30%), Positives = 221/439 (50%), Gaps = 23/439 (5%)
Query: 71 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 130
PFT + D +PL+IE G V D+NGK+Y D + +W G + L A QL
Sbjct: 16 PFTQ-MKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLG 74
Query: 131 TLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 190
+ + + T P+ LA+ L+++ + K+ +VF+++SG+EA + +K+ + Y +G
Sbjct: 75 KIA-HSTLLGMTNVPATQLAETLIDI-SPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIG 132
Query: 191 RPNKKKFIARQKSYHGSTLIAASLSGL--------PALHQKFDLPAPFVLHTDCPHYWRY 242
+P K+KFIA + YHG T+ A S+ + P + + + P P+V ++
Sbjct: 133 KPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSES------ 186
Query: 243 AHPGETEEEYSTRLANNLEDLILKEGPETIAAF-IAEXXXXXXXXXXXXXTYFEKVQAVV 301
P E ++ LA +L+E E IAA I Y V+ +
Sbjct: 187 GDPDECRDQCLRELAQ-----LLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELC 241
Query: 302 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEV 361
YD+L I DEV FGR G MF C+ +++PDL++ K ++ Y+PI + ++ +
Sbjct: 242 TTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKA 301
Query: 362 IHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS 421
+ L +F HG +Y+G+ + CAVA+E L +++ NIVEQV + + K ++
Sbjct: 302 FYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHAL 361
Query: 422 PIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPP 481
P +G+IR G + G E +K EP+P + IG + + GML R GD I PP
Sbjct: 362 PHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFLPP 421
Query: 482 FIMSPEEVDELISKYGKAL 500
+ EE+ E+++ +A+
Sbjct: 422 LASTAEELSEMVAIMKQAI 440
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 226 bits (577), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/429 (32%), Positives = 228/429 (53%), Gaps = 22/429 (5%)
Query: 88 KSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 147
K+EG +V D+ GK+YLD +GLWC G L AA QL TL ++ +++ +P++
Sbjct: 37 KAEGCWVEDIQGKRYLDGXSGLWCVNSGYGRKELAEAAYKQLQTLSYFPX--SQSHEPAI 94
Query: 148 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGS 207
LA++L E + +FF+NSGSEAN+T K+ Y G P++ KF +R + YHG+
Sbjct: 95 KLAEKLNEWLGGEYV--IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFXSRYRGYHGN 152
Query: 208 TLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPG-ETEEEYSTRLANNLEDLILK 266
T + +G +++ A LH P +R PG E E Y ++ +
Sbjct: 153 TXATXAATGQAQRRYQYEPFASGFLHVTPPDCYR--XPGIERENIYDVECVKEVDRVXTW 210
Query: 267 EGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGC 326
E ETIAAFI E Y + V +K+ L I+DEVIC FGR G FG
Sbjct: 211 ELSETIAAFIXEPIITGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKAFGF 270
Query: 327 DKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCA 386
Y +KPD+++ AK ++SAY+P+ A V E+ E + F H T+ G+P +CA
Sbjct: 271 XNYDVKPDIITXAKGITSAYLPLSATAVKREIYEAFKGKGE-YEFFRHINTFGGNPAACA 329
Query: 387 VAIEALKIYKERNIVEQVNKIAPKFQDGVK-AFSDSPIIGEIRGTGLILGTEFADNKSPN 445
+A++ L+I + N++E+ + + +K + P++G+IRG GL++G E ++K
Sbjct: 330 LALKNLEIIENENLIERSAQXGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETK 389
Query: 446 EPFPPEWGIGAYFGAQCEKHGMLVRVSG------DNIM-MSPPFIMSPEEVDELISKYGK 498
EP + I + A C++ G+++ +G +NI+ ++PP ++S EE+ +I
Sbjct: 390 EPIDND-KIASVVNA-CKEKGLIIGRNGXTTAGYNNILTLAPPLVISSEEIAFVIG---- 443
Query: 499 ALKATEERV 507
LK ER+
Sbjct: 444 TLKTAXERI 452
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 131/422 (31%), Positives = 203/422 (48%), Gaps = 12/422 (2%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 142
P +I +EGS++ D G+K DSL+GLW G + + A QL+TL + F +
Sbjct: 33 PRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGF--QY 90
Query: 143 TKP-SLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 201
P S LA+++ ++ T + VFFT+SGSE T VK+V Y G+ K K I R
Sbjct: 91 GHPLSFQLAEKITDL-TPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRA 149
Query: 202 KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLE 261
+ YHG + SL G+ + F P V H A+ +E LA+ L
Sbjct: 150 RGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELL 209
Query: 262 DLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLG 321
LI IAA E Y ++ + + +++IL + DEVI FGR G
Sbjct: 210 KLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG 269
Query: 322 TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNT--LGSFSHGFTYS 379
+MFG D + + PDL+ AK +++ +P+GA++ S E+ + +Q F HG+TYS
Sbjct: 270 SMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYS 329
Query: 380 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFA 439
HPV+CA + AL + ++ N+V+ V ++AP F+ + + + +IR GL + A
Sbjct: 330 AHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIA 389
Query: 440 DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKA 499
P E G+ + K G VR GD + P F P+++D L G+
Sbjct: 390 PRDGDAIVRPFEAGMALW------KAGFYVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEV 443
Query: 500 LK 501
L
Sbjct: 444 LN 445
>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
Length = 430
Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 127/429 (29%), Positives = 207/429 (48%), Gaps = 33/429 (7%)
Query: 76 WQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY 135
++S+ +P+ + + EG ++YD G++YLD +G +G + AQ LPF
Sbjct: 6 YRSSKPYPVAV-RGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFV 64
Query: 136 HSFWNRTTKPSLDLAKEL---LEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRP 192
H ++ S D+ +E L F + + + GSEA ++ VKL Y+ G P
Sbjct: 65 HG-----SQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEP 119
Query: 193 NKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEY 252
+ K I R SYHG++L + + SG+ A + +L P + P W P
Sbjct: 120 GRFKVITRVPSYHGASLGSLAASGMGA---RRELYTPLMR----PEAWPKL-PKPDPARN 171
Query: 253 STRLANNLEDLILKEGPETIAAFIAE-XXXXXXXXXXXXXTYFEKVQAVVKKYDILFIAD 311
A L L+ +EGPET+AAF+AE Y+E+V+ + + I+FIAD
Sbjct: 172 GAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIAD 231
Query: 312 EVICAFGRLGTMFGCDKYS-IKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLG 370
EV+ GR G+ ++S + PD+ K L++ Y P+ +L +P+V E + S G
Sbjct: 232 EVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGS---G 288
Query: 371 SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRG 429
+F HGFTY+GHPVS A + L I + ++ + + G++A P + ++RG
Sbjct: 289 AFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRG 348
Query: 430 TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLV--------RVSGDNIMMSPP 481
TGL+LG D + P GI + GA K G++ GD++++ PP
Sbjct: 349 TGLLLGVVLGDLATGQAFETP--GIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPP 406
Query: 482 FIMSPEEVD 490
++ EVD
Sbjct: 407 LSITAAEVD 415
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 126/438 (28%), Positives = 208/438 (47%), Gaps = 47/438 (10%)
Query: 77 QSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALG-GSEPRLVAAATAQLNTLPFY 135
+ ++ PLVI+ EG ++YDV+G KYLD +G+ LG S P ++ Q+ L
Sbjct: 19 RDPELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHA 78
Query: 136 --HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPN 193
+ F+N P L+LAK+L+ + KVFF+NSG+EA + +K+V
Sbjct: 79 AANDFYN---IPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVV-------KNTG 128
Query: 194 KKKFIARQKSYHGSTLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWR---YAHPGETE 249
+K IA +HG T + SL+ A+ + P P V+H P+ +R + + E
Sbjct: 129 RKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENP 188
Query: 250 EEYSTRLANNLEDLILKE--GPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDIL 307
E R+ +ED I PE +A E +F ++Q + KKY IL
Sbjct: 189 SELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGIL 248
Query: 308 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 367
+ DEV GR G +F + ++ PD+++ AKAL MPIGA + ++ SN
Sbjct: 249 LVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLDFKPGMHSN 308
Query: 368 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 427
T G G+ ++CA+ + + I K+ ++ VN+I F + ++ +D ++
Sbjct: 309 TFG---------GNALACAIGSKVIDIVKD--LLPHVNEIGKIFAEELQGLAD-----DV 352
Query: 428 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSP 486
RG GL G E+ + K + IG F K G+L+ +G + I + PP ++S
Sbjct: 353 RGIGLAWGLEYNEKKVRDRI------IGESF-----KRGLLLLPAGRSAIRVIPPLVISE 401
Query: 487 EEVDELISKYGKALKATE 504
EE + + K +K +
Sbjct: 402 EEAKQGLDILKKVIKVVK 419
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 120/435 (27%), Positives = 196/435 (45%), Gaps = 49/435 (11%)
Query: 72 FTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNT 131
T G + D P+V+++ +G +VYD+ ++Y D L+ G P ++ A Q
Sbjct: 18 LTYGAHNYDPIPVVLKRGKGVFVYDIEDRRYYDFLSAYSSVNQGHCHPDILNAMINQAKK 77
Query: 132 LPFY-HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNA 188
L +F++ SL + + L KV N+G+EA++T KL W Y
Sbjct: 78 LTICSRAFFSD----SLGVCERYLTNLFGYD--KVLMMNTGAEASETAYKLCRKWGYEVK 131
Query: 189 LGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGET 248
N K I ++ G TL S S F PFV P++ + +
Sbjct: 132 KIPENSAKIIVCNNNFSGRTLGCVSASTDKKCKNNF---GPFV-----PNFLKVPY---- 179
Query: 249 EEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILF 308
++LE L + + AFI E +YF V ++ KKY++LF
Sbjct: 180 ---------DDLEALEKELQDPNVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLF 230
Query: 309 IADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNT 368
+ADEV GR G + Y +KPD++ KALS + PI AIL + +V V+
Sbjct: 231 VADEVQTGLGRTGKLLCTHHYGVKPDVILLGKALSGGHYPISAILANDDVMLVLKPG--- 287
Query: 369 LGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKI-APKFQDGVKAFSDSPIIGEI 427
HG TY G+P++ A+ +EALK+ + E +K+ AP Q+ + DS ++ E+
Sbjct: 288 ----EHGSTYGGNPLAAAICVEALKVLINEKLCENADKLGAPFLQNLKEQLKDSKVVREV 343
Query: 428 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-VSGDNIMMSPPFIMSP 486
RG GL+ EF ++ W I F +++G++ R V + ++PP ++
Sbjct: 344 RGKGLLCAIEFKND------LVNVWDICLKF----KENGLITRSVHDKTVRLTPPLCITK 393
Query: 487 EEVDELISKYGKALK 501
E++DE K +K
Sbjct: 394 EQLDECTEIIVKTVK 408
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 158 bits (399), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 197/426 (46%), Gaps = 58/426 (13%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS-FWNR 141
P +GS++YD G YLD +G+ LG S PRLV A Q L + FWNR
Sbjct: 11 PATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNR 70
Query: 142 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 201
P ++LA ELL T KVFF N+G+EAN+ +K+ Y K + ++
Sbjct: 71 ---PQMELA-ELLSKNTFG--GKVFFANTGTEANEAAIKIARKYGKKK-SEKKYRILSAH 123
Query: 202 KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLE 261
S+HG TL + + +G P + F+ P V PG E+ NN+E
Sbjct: 124 NSFHGRTLGSLTATGQPKYQKPFE---PLV-------------PGFEYFEF-----NNVE 162
Query: 262 DLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLG 321
DL K + A F+ E + E+ + + +YD L + DEV C GR G
Sbjct: 163 DLRRKMSEDVCAVFL-EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG 221
Query: 322 TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGH 381
+F KY + PD+++ AK L +PIGA++V + ++N L HG T+ G+
Sbjct: 222 KLFAYQKYGVVPDVLTTAKGLGGG-VPIGAVIV--------NERANVLEPGDHGTTFGGN 272
Query: 382 PVSCAVAIEALKIYKERNIVEQV----NKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTE 437
P++C + +K + +E+V N + K Q+ + + ++ ++RG GL++G +
Sbjct: 273 PLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYD---VVADVRGMGLMIGIQ 329
Query: 438 FADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSPEEVDELISKY 496
F + S E +C ++ +LV +G+N I PP + E+D +
Sbjct: 330 FREEVSNRE-----------VATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETL 378
Query: 497 GKALKA 502
K L+
Sbjct: 379 KKVLQG 384
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/433 (26%), Positives = 197/433 (45%), Gaps = 40/433 (9%)
Query: 82 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 141
P++IE+++GS+VYD +G+ LD +G LG P +V+ L H F
Sbjct: 25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLD--HLFSGM 82
Query: 142 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 201
++P +DLA L + T + + ++G+E+N+ +++ K + +
Sbjct: 83 LSRPVVDLATRLANI-TPPGLDRALLLSTGAESNEAAIRMAKLVTG------KYEIVGFA 135
Query: 202 KSYHGSTLIAASLS------GL-PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 254
+S+HG T AAS + G+ PA F +PAPF Y + E + +
Sbjct: 136 QSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAF-- 193
Query: 255 RLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVI 314
DLI ++ +AAFIAE Y ++ + +L I DE
Sbjct: 194 -------DLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQ 246
Query: 315 CAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSH 374
GR GTMF C + + PD+++ +K L A +P+ AI+ S + E H LG +
Sbjct: 247 TGVGRTGTMFACQRDGVTPDILTLSKTL-GAGLPLAAIVTSAAIEERAHE----LGYLFY 301
Query: 375 GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLI 433
T+ P+ AV + L + + +V + N + + + G+ + IG++RG GL+
Sbjct: 302 -TTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLL 360
Query: 434 LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV-----SGDNIMMSPPFIMSPEE 488
LG E ++ EP G+GA +C G+ + + G ++PP +S +E
Sbjct: 361 LGVEIVKDRRTKEPAD---GLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDE 417
Query: 489 VDELISKYGKALK 501
+D +S G+A++
Sbjct: 418 IDLGLSLLGQAIE 430
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/433 (26%), Positives = 197/433 (45%), Gaps = 40/433 (9%)
Query: 82 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 141
P++IE+++GS+VYD +G+ LD +G LG P +V+ L H F
Sbjct: 23 EPMIIERAKGSFVYDADGRAILDFTSGAMSAVLGHCHPEIVSVIGEYAGKLD--HLFSEM 80
Query: 142 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 201
++P +DLA L + T + + ++G+E+N+ +++ K + +
Sbjct: 81 LSRPVVDLATRLANI-TPPGLDRALLLSTGAESNEAAIRMAKLVTG------KYEIVGFA 133
Query: 202 KSYHGSTLIAASLS------GL-PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 254
+S+HG T AAS + G+ PA F +PAPF Y + E + +
Sbjct: 134 QSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAF-- 191
Query: 255 RLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVI 314
DLI ++ +AAFIAE Y ++ + +L I DE
Sbjct: 192 -------DLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQ 244
Query: 315 CAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSH 374
GR GTMF C + + PD+++ +K L A +P+ AI+ S + E H LG +
Sbjct: 245 TGVGRTGTMFACQRDGVTPDILTLSKTL-GAGLPLAAIVTSAAIEERAHE----LGYLFY 299
Query: 375 GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLI 433
T+ P+ AV + L + + +V + N + + + G+ + IG++RG GL+
Sbjct: 300 -TTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLL 358
Query: 434 LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV-----SGDNIMMSPPFIMSPEE 488
LG E ++ EP G+GA +C G+ + + G ++PP +S +E
Sbjct: 359 LGVEIVKDRRTKEPAD---GLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDE 415
Query: 489 VDELISKYGKALK 501
+D +S G+A++
Sbjct: 416 IDLGLSLLGQAIE 428
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 113/433 (26%), Positives = 197/433 (45%), Gaps = 40/433 (9%)
Query: 82 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 141
P++IE+++GS+VYD +G+ LD +G LG P +V+ L H F
Sbjct: 24 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLD--HLFSGM 81
Query: 142 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 201
++P +DLA L + T + + ++G+E+N+ +++ K + +
Sbjct: 82 LSRPVVDLATRLANI-TPPGLDRALLLSTGAESNEAAIRMAKLVTG------KYEIVGFA 134
Query: 202 KSYHGSTLIAASLS------GL-PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 254
+S+HG T AAS + G+ PA F +PAPF Y + E + +
Sbjct: 135 QSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAF-- 192
Query: 255 RLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVI 314
DLI ++ +AAFIAE Y ++ + +L I DE
Sbjct: 193 -------DLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQ 245
Query: 315 CAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSH 374
GR GTMF C + + PD+++ +K L A +P+ AI+ S + E H LG +
Sbjct: 246 TGVGRTGTMFACQRDGVTPDILTLSKTL-GAGLPLAAIVTSAAIEERAHE----LGYLFY 300
Query: 375 GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLI 433
T+ P+ AV + L + + +V + N + + + G+ + IG++RG GL+
Sbjct: 301 -TTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLL 359
Query: 434 LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV-----SGDNIMMSPPFIMSPEE 488
LG E ++ EP G+GA +C G+ + + G ++PP +S +E
Sbjct: 360 LGVEIVKDRRTKEPAD---GLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDE 416
Query: 489 VDELISKYGKALK 501
+D +S G+A++
Sbjct: 417 IDLGLSLLGQAIE 429
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 195/426 (45%), Gaps = 58/426 (13%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS-FWNR 141
P +GS++YD G YLD +G+ LG S PRLV A Q L + FWNR
Sbjct: 23 PATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNR 82
Query: 142 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 201
P +LA ELL T KVFF N+G+EAN+ +K+ Y K + ++
Sbjct: 83 ---PQXELA-ELLSKNTFG--GKVFFANTGTEANEAAIKIARKYGKKK-SEKKYRILSAH 135
Query: 202 KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLE 261
S+HG TL + + +G P + F+ P V PG E+ NN+E
Sbjct: 136 NSFHGRTLGSLTATGQPKYQKPFE---PLV-------------PGFEYFEF-----NNVE 174
Query: 262 DLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLG 321
DL K + A F+ E + E+ + + +YD L + DEV C GR G
Sbjct: 175 DLRRKXSEDVCAVFL-EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGXGRTG 233
Query: 322 TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGH 381
+F KY + PD+++ AK L +PIGA++V + ++N L HG T+ G+
Sbjct: 234 KLFAYQKYGVVPDVLTTAKGLGGG-VPIGAVIV--------NERANVLEPGDHGTTFGGN 284
Query: 382 PVSCAVAIEALKIYKERNIVEQV----NKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTE 437
P++C + +K + +E+V N + K Q+ + + ++ ++RG GL +G +
Sbjct: 285 PLACRAGVTVIKELTKEGFLEEVEEKGNYLXKKLQEXKEEYD---VVADVRGXGLXIGIQ 341
Query: 438 FADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSPEEVDELISKY 496
F + S E +C ++ +LV +G+N I PP + E+D +
Sbjct: 342 FREEVSNRE-----------VATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETL 390
Query: 497 GKALKA 502
K L+
Sbjct: 391 KKVLQG 396
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 113/433 (26%), Positives = 197/433 (45%), Gaps = 40/433 (9%)
Query: 82 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 141
P++IE+++GS+VYD +G+ LD +G LG P +V+ L H F
Sbjct: 25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLD--HLFSEM 82
Query: 142 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 201
++P +DLA L + T + + ++G+E+N+ +++ K + +
Sbjct: 83 LSRPVVDLATRLANI-TPPGLDRALLLSTGAESNEAAIRMAKLVTG------KYEIVGFA 135
Query: 202 KSYHGSTLIAASLS------GL-PALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 254
+S+HG T AAS + G+ PA F +PAPF Y + E + +
Sbjct: 136 QSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAF-- 193
Query: 255 RLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVI 314
DLI ++ +AAFIAE Y ++ + +L I DE
Sbjct: 194 -------DLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQ 246
Query: 315 CAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSH 374
GR GTMF C + + PD+++ +K L A +P+ AI+ S + E H LG +
Sbjct: 247 TGVGRTGTMFACQRDGVTPDILTLSKTL-GAGLPLAAIVTSAAIEERAHE----LGYLFY 301
Query: 375 GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLI 433
T+ P+ AV + L + + +V + N + + + G+ + IG++RG GL+
Sbjct: 302 -TTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLL 360
Query: 434 LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV-----SGDNIMMSPPFIMSPEE 488
LG E ++ EP G+GA +C G+ + + G ++PP +S +E
Sbjct: 361 LGVEIVKDRRTKEPAD---GLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDE 417
Query: 489 VDELISKYGKALK 501
+D +S G+A++
Sbjct: 418 IDLGLSLLGQAIE 430
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 114/416 (27%), Positives = 192/416 (46%), Gaps = 48/416 (11%)
Query: 88 KSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL 147
K +GS V+D GK+Y+D G+ TALG P LV A +Q TL +H+ T +P+L
Sbjct: 45 KGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETL--WHTSNVFTNEPAL 102
Query: 148 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGS 207
L ++L++ A+ +V F NSG+EAN+T KL +Y P K K IA ++HG
Sbjct: 103 RLGRKLID---ATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGR 159
Query: 208 TLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 267
+L S+ G P F ++H N+L +
Sbjct: 160 SLFTVSVGGQPKYSDGFGPKPADIIHVPF---------------------NDLHAVKAVM 198
Query: 268 GPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCD 327
T A + E + + ++ + ++ L + DEV C GR G +F
Sbjct: 199 DDHT-CAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYM 257
Query: 328 KYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 387
Y + PD+++ AKAL + P+ A+L + E++ H SHG TY G+P++CAV
Sbjct: 258 HYGVTPDILTSAKALGGGF-PVSAMLTTQEIASAFHVG-------SHGSTYGGNPLACAV 309
Query: 388 AIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFADN-KSPN 445
A A I +++ ++ +F ++A + I +IRG GL++G E K
Sbjct: 310 AGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRA 369
Query: 446 EPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYGKAL 500
F Y GA+ G++V +G ++M +P ++ ++ E + ++ +A+
Sbjct: 370 RDF-------LYAGAEA---GVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQAV 415
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 114/438 (26%), Positives = 192/438 (43%), Gaps = 51/438 (11%)
Query: 75 GWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF 134
G + D P+V+++++G +VYDVN K+Y D L+ G P ++ A Q L
Sbjct: 40 GAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTI 99
Query: 135 YHSFWNRTTKPSLDLAKELLEMFTASKMA--KVFFTNSGSEANDTQVKLV--WYYNNALG 190
++ + + E + + + KV N+G+EAN+T KL W Y
Sbjct: 100 -------CSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKI 152
Query: 191 RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 250
N K + + ++ G TL S S F PF P + + +
Sbjct: 153 PENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF---GPFA-----PQFSKVPY------ 198
Query: 251 EYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIA 310
++LE L + + AFI E Y + V + KKY++LF+A
Sbjct: 199 -------DDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVA 251
Query: 311 DEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLG 370
DEV GR G + Y++KPD++ KALS + PI A+L + ++ VI
Sbjct: 252 DEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPG----- 306
Query: 371 SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVK-AFSDSPIIGEIRG 429
HG TY G+P++ ++ +EAL + + E K+ F + +K DS I+ ++RG
Sbjct: 307 --EHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRG 364
Query: 430 TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-VSGDNIMMSPPFIMSPEE 488
GL+ EF + E + +++G++ R V I ++PP ++ E+
Sbjct: 365 KGLLCAIEFKN----------ELVNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQ 414
Query: 489 VDELISKYGKALKATEER 506
+DE K +K +ER
Sbjct: 415 LDECTEIIVKTVKFFDER 432
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 151 bits (382), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 121/416 (29%), Positives = 192/416 (46%), Gaps = 61/416 (14%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTL----PFYHSF 138
P+ + +G Y+YD GK+YLD ++G+ +LG + P+L A Q+ L Y +
Sbjct: 11 PVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENP 70
Query: 139 WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 198
W +LA +L++ F KVFF NSG+E+ + +KL Y G+ NK KFI
Sbjct: 71 WQE------ELAHKLVKHFWTE--GKVFFANSGTESVEAAIKLARKYWRDKGK-NKWKFI 121
Query: 199 ARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 258
+ + S+HG T + S +G P H+ F+ P V PG +S N
Sbjct: 122 SFENSFHGRTYGSLSATGQPKFHKGFE---PLV-------------PG-----FSYAKLN 160
Query: 259 NLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFG 318
++ D + K E A I E + K+Q + K+ D+L I DEV G
Sbjct: 161 DI-DSVYKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIG 219
Query: 319 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 378
R G + +++KPD+++ AK L +PIGAIL EV +QS T G SHG T+
Sbjct: 220 RTGEFYAYQHFNLKPDVIALAKGLGGG-VPIGAILAREEV-----AQSFTPG--SHGSTF 271
Query: 379 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEF 438
G+P++C + + + ++ V ++ F++ +K G+++G GL+LG E
Sbjct: 272 GGNPLACRAG--TVVVDEVEKLLPHVREVGNYFKEKLKELGK----GKVKGRGLMLGLEL 325
Query: 439 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELIS 494
E Y EK ++ +G + PP I+ E +D IS
Sbjct: 326 ------------ERECKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAIS 369
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 181/372 (48%), Gaps = 30/372 (8%)
Query: 81 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWN 140
+HP+ +++E V+DV G++YLD G+ G P++VAA AQL L + F
Sbjct: 22 IHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS-HTCFQV 80
Query: 141 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIAR 200
+P L+L + + + K +GSEA + VK+ A + IA
Sbjct: 81 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKI------ARAATKRSGTIAF 134
Query: 201 QKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHP----GETEEEYSTRL 256
+YHG T +L+G K + P + H +R +P G +E++ +
Sbjct: 135 SGAYHGRTHYTLALTG------KVN-PYSAGMGLMPGHVYRALYPCPLHGISEDDAIASI 187
Query: 257 ANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICA 316
++ PE IAA + E + ++++A+ ++ I+ IADEV
Sbjct: 188 HRIFKN---DAAPEDIAAIVIEPVQGSGGFYASSPAFMQRLRALCDEHGIMLIADEVQSG 244
Query: 317 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF 376
GR GT+F ++ + PDL +FAK+++ + P+ + EV + + G
Sbjct: 245 AGRTGTLFAMEQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAV-------APGGLGG 296
Query: 377 TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILG 435
TY+G+P++C A+E LK++++ N++++ N + K +DG+ A ++ P IG++RG G ++
Sbjct: 297 TYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIA 356
Query: 436 TEFADNKSPNEP 447
E ++ N+P
Sbjct: 357 IELFEDGDHNKP 368
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 181/372 (48%), Gaps = 30/372 (8%)
Query: 81 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWN 140
+HP+ +++E V+DV G++YLD G+ G P++VAA AQL L + F
Sbjct: 22 IHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS-HTCFQV 80
Query: 141 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIAR 200
+P L+L + + + K +GSEA + VK+ A + IA
Sbjct: 81 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKI------ARAATKRSGTIAF 134
Query: 201 QKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHP----GETEEEYSTRL 256
+YHG T +L+G K + P + H +R +P G +E++ +
Sbjct: 135 SGAYHGRTHYTLALTG------KVN-PYSAGMGLMPGHVYRALYPCPLHGISEDDAIASI 187
Query: 257 ANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICA 316
++ PE IAA + E + ++++A+ ++ I+ IADEV
Sbjct: 188 HRIFKN---DAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSG 244
Query: 317 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF 376
GR GT+F ++ + PDL +FAK+++ + P+ + EV + + G
Sbjct: 245 AGRTGTLFAMEQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAV-------APGGLGG 296
Query: 377 TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILG 435
TY+G+P++C A+E LK++++ N++++ N + K +DG+ A ++ P IG++RG G ++
Sbjct: 297 TYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIA 356
Query: 436 TEFADNKSPNEP 447
E ++ N+P
Sbjct: 357 IELFEDGDHNKP 368
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 180/372 (48%), Gaps = 30/372 (8%)
Query: 81 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWN 140
+HP+ +++E V+DV G++YLD G G P++VAA AQL L + F
Sbjct: 22 IHPIFADRAENCRVWDVEGREYLDFAGGQAVLNTGHLHPKVVAAVEAQLKKLS-HTCFQV 80
Query: 141 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIAR 200
+P L+L + + + K +GSEA + VK+ A + IA
Sbjct: 81 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKI------ARAATKRSGTIAF 134
Query: 201 QKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHP----GETEEEYSTRL 256
+YHG T +L+G K + P + H +R +P G +E++ +
Sbjct: 135 SGAYHGRTHYTLALTG------KVN-PYSAGMGLMPGHVYRALYPCPLHGISEDDAIASI 187
Query: 257 ANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICA 316
++ PE IAA + E + ++++A+ ++ I+ IADEV
Sbjct: 188 HRIFKN---DAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSG 244
Query: 317 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF 376
GR GT+F ++ + PDL +FAK+++ + P+ + EV + + G
Sbjct: 245 AGRTGTLFAMEQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAV-------APGGLGG 296
Query: 377 TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILG 435
TY+G+P++C A+E LK++++ N++++ N + K +DG+ A ++ P IG++RG G ++
Sbjct: 297 TYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIA 356
Query: 436 TEFADNKSPNEP 447
E ++ N+P
Sbjct: 357 IELFEDGDHNKP 368
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 98/372 (26%), Positives = 180/372 (48%), Gaps = 30/372 (8%)
Query: 81 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWN 140
+HP+ +++E V+DV G++YLD G+ G P++VAA AQL L + F
Sbjct: 22 IHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS-HTCFQV 80
Query: 141 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIAR 200
+P L+L + + + K +GSEA + VK+ A + IA
Sbjct: 81 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKI------ARAATKRSGTIAF 134
Query: 201 QKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHP----GETEEEYSTRL 256
+YHG T +L+G K + P + H +R +P G +E++ +
Sbjct: 135 SGAYHGRTHYTLALTG------KVN-PYSAGMGLMPGHVYRALYPCPLHGISEDDAIASI 187
Query: 257 ANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICA 316
++ PE IAA + E + ++++A+ ++ I+ IADE
Sbjct: 188 HRIFKN---DAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEAQSG 244
Query: 317 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF 376
GR GT+F ++ + PDL +FAK+++ + P+ + EV + + G
Sbjct: 245 AGRTGTLFAMEQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAV-------APGGLGG 296
Query: 377 TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILG 435
TY+G+P++C A+E LK++++ N++++ N + K +DG+ A ++ P IG++RG G ++
Sbjct: 297 TYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIA 356
Query: 436 TEFADNKSPNEP 447
E ++ N+P
Sbjct: 357 IELFEDGDHNKP 368
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 115/421 (27%), Positives = 199/421 (47%), Gaps = 46/421 (10%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 142
P + + EGS ++D GK+Y+D G+ ALG + P L A Q + F+H+ T
Sbjct: 22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYT 79
Query: 143 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 202
+P L LAK+L++ A+ +VFF NSG+EAN+ +KL + + +K +A +
Sbjct: 80 NEPVLRLAKKLID---ATFADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKN 136
Query: 203 SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLED 262
++HG TL S G PA Q F AP P R+A + N+
Sbjct: 137 AFHGRTLFTVSAGGQPAYSQDF---APL------PADIRHAAYNDI---------NSASA 178
Query: 263 LILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGT 322
LI ++ A I E + + ++ + +++ L I DEV GR G
Sbjct: 179 LI----DDSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE 234
Query: 323 MFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHP 382
++ Y + PDL++ AKAL + P+GA+L + E + V+ T+G +HG TY G+P
Sbjct: 235 LYAYMHYGVTPDLLTTAKALGGGF-PVGALLATEECARVM-----TVG--THGTTYGGNP 286
Query: 383 VSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFADN 441
++ AVA + L++ ++ V + F + + + + E+RG GL++G +
Sbjct: 287 LASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNAD 346
Query: 442 KSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYGKAL 500
+ G + K G++V ++G N++ +P +S EEV + ++ A
Sbjct: 347 YA---------GQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAAAC 397
Query: 501 K 501
+
Sbjct: 398 E 398
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 118/430 (27%), Positives = 196/430 (45%), Gaps = 65/430 (15%)
Query: 72 FTAGWQSTDVHPL--VIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQL 129
T + + + HPL VI K+EG +V D G +Y+D L+ G P+++ A Q
Sbjct: 6 LTDTYGANNYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQA 65
Query: 130 NTLPFY-HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYN 186
N + +F + P + +L T +M V N+G+EA +T +K W Y+
Sbjct: 66 NRVTLTSRAFHSDQLGPWYEKVAKL----TNKEM--VLPMNTGAEAVETAIKTARRWAYD 119
Query: 187 NALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFD--LPAPFVLHTDCPHYWRYAH 244
N+ + I + ++HG T+ A S+S + F LP V+ P+
Sbjct: 120 VKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVI----PY------ 169
Query: 245 PGETEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKY 304
+LE L P T AAFI E + ++ V KK
Sbjct: 170 -------------GDLEALKAAITPNT-AAFILEPIQGEAGINIPPAGFLKEALEVCKKE 215
Query: 305 DILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHS 364
++LF+ADE+ GR G +F CD ++ PD+ AL PI +
Sbjct: 216 NVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILGXALGGGVFPISC----------AAA 265
Query: 365 QSNTLGSF---SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS 421
+ LG F SHG T+ G+P++CAV+I AL++ +E + E+ ++ K +K D+
Sbjct: 266 NRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEI-DN 324
Query: 422 PIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSP 480
P+I E+RG GL +G E NEP P + Q + G+L + + +N++ ++P
Sbjct: 325 PMITEVRGKGLFIGIEL------NEPARP-------YCEQLKAAGLLCKETHENVIRIAP 371
Query: 481 PFIMSPEEVD 490
P ++S E+++
Sbjct: 372 PLVISEEDLE 381
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 110/442 (24%), Positives = 202/442 (45%), Gaps = 30/442 (6%)
Query: 63 FKGHDMLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLV 122
F +L P+T+ V+P+V +EG + +G++ +D ++ W G + P+L
Sbjct: 8 FDQRHILHPYTSMTSPLPVYPVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLN 65
Query: 123 AAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV 182
AA +Q++ + + F T P+++L ++L+ M T + VF +SGS A + +K+
Sbjct: 66 AAMKSQIDAMS-HVMFGGITHAPAIELCRKLVAM-TPQPLECVFLADSGSVAVEVAMKMA 123
Query: 183 WYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPHYWR 241
Y A G +++F+ + YHG T A S+ ++H + P L P
Sbjct: 124 LQYWQAKGE-ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQ--- 179
Query: 242 YAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVV 301
+ E+ R L+ E A I + ++++ +
Sbjct: 180 ----SRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKIC 235
Query: 302 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEV 361
+ IL IADE+ FGR G +F C+ I PD++ KAL+ M + A L + EV+E
Sbjct: 236 DREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAET 295
Query: 362 IHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS 421
I + G F HG T+ G+P++CA A +L I + + +QV I + ++ + D+
Sbjct: 296 I--SNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDA 353
Query: 422 PIIGEIRGTGLI--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMS 479
++ ++R G I + T N + + F E G+ +R G I +
Sbjct: 354 EMVADVRVLGAIGVVETTHPVNMAALQKFFVE-------------QGVWIRPFGKLIYLM 400
Query: 480 PPFIMSPEEVDELISKYGKALK 501
PP+I+ P+++ L + +A++
Sbjct: 401 PPYIILPQQLQRLTAAVNRAVQ 422
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 119/421 (28%), Positives = 193/421 (45%), Gaps = 48/421 (11%)
Query: 84 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTT 143
+V+EK +G Y++D KKYLD +G+ ALG + + A AQ++ L + +
Sbjct: 20 IVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNE- 78
Query: 144 KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK-KFIARQK 202
++A + AS + +VFFTNSG+E+ + K Y A + K +FIA +
Sbjct: 79 ----NIAAAAKNLAKASALERVFFTNSGTESIEGAXKTARKY--AFNKGVKGGQFIAFKH 132
Query: 203 SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLED 262
S+HG TL A SL+ ++K+ PF + +Y E +L N
Sbjct: 133 SFHGRTLGALSLTA----NEKYQ--KPFKPLISGVKFAKYNDISSVE-----KLVN---- 177
Query: 263 LILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGT 322
E A I E +++ ++ + + DIL IADE+ C GR G
Sbjct: 178 -------EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSGK 230
Query: 323 MFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHP 382
F + I PD+ + AKAL + +GA +++ +V+ SN+L + HG TY G+P
Sbjct: 231 FFAYEHAQILPDIXTSAKALGCG-LSVGAFVINQKVA------SNSLEAGDHGSTYGGNP 283
Query: 383 VSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNK 442
+ CA +I+KE I+E VNK+ P + + +I E G F
Sbjct: 284 LVCAGVNAVFEIFKEEKILENVNKLTPYLEQSL-----DELINEFDFCKKRKGLGFXQGL 338
Query: 443 SPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSPEEVDELISKYGKALK 501
S ++ I +C+++ +L+ G+N + PP I+ E +DE K KALK
Sbjct: 339 SLDKSVKVAKVI-----QKCQENALLLISCGENDLRFLPPLILQKEHIDEXSEKLRKALK 393
Query: 502 A 502
+
Sbjct: 394 S 394
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 138 bits (347), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 110/442 (24%), Positives = 201/442 (45%), Gaps = 30/442 (6%)
Query: 63 FKGHDMLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLV 122
F +L PFT+ V+P+V +EG + +G++ +D ++ W G + P+L
Sbjct: 8 FDQRHILHPFTSMTSPLPVYPVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLN 65
Query: 123 AAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV 182
AA +Q++ + + F T P+++L ++L+ M T + VF +SGS A + +K+
Sbjct: 66 AAMKSQIDAMS-HVMFGGITHAPAIELCRKLVAM-TPQPLECVFLADSGSVAVEVAMKMA 123
Query: 183 WYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPHYWR 241
Y A G +++F+ + YHG T A S+ ++H + P L P
Sbjct: 124 LQYWQAKGE-ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQ--- 179
Query: 242 YAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVV 301
+ E+ R L+ E A I + ++++ +
Sbjct: 180 ----SRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKIC 235
Query: 302 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEV 361
+ IL IADE+ FGR G +F C+ I PD++ AL+ M + A L + EV+E
Sbjct: 236 DREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAET 295
Query: 362 IHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS 421
I + G F HG T+ G+P++CA A +L I + + +QV I + ++ + D+
Sbjct: 296 I--SNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDA 353
Query: 422 PIIGEIRGTGLI--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMS 479
++ ++R G I + T N + + F E G+ +R G I +
Sbjct: 354 EMVADVRVLGAIGVVETTHPVNMAALQKFFVE-------------QGVWIRPFGKLIYLM 400
Query: 480 PPFIMSPEEVDELISKYGKALK 501
PP+I+ P+++ L + +A++
Sbjct: 401 PPYIILPQQLQRLTAAVNRAVQ 422
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/442 (24%), Positives = 202/442 (45%), Gaps = 30/442 (6%)
Query: 63 FKGHDMLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLV 122
F +L P+T+ V+P+V +EG + +G++ +D ++ W G + P+L
Sbjct: 8 FDQRHILHPYTSMTSPLPVYPVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLN 65
Query: 123 AAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV 182
AA +Q++ + + F T P+++L ++L+ M T + VF +SGS A + +K+
Sbjct: 66 AAMKSQIDAMS-HVMFGGITHAPAIELCRKLVAM-TPQPLECVFLADSGSVAVEVAMKMA 123
Query: 183 WYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPHYWR 241
Y A G +++F+ + YHG+T A S+ ++H + P L P
Sbjct: 124 LQYWQAKGE-ARQRFLTFRNGYHGNTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQ--- 179
Query: 242 YAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVV 301
+ E+ R L+ E A I + ++++ +
Sbjct: 180 ----SRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKIC 235
Query: 302 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEV 361
+ IL IADE+ FGR G +F C+ I PD++ AL+ M + A L + EV+E
Sbjct: 236 DREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAET 295
Query: 362 IHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS 421
I + G F HG T+ G+P++CA A +L I + + +QV I + ++ + D+
Sbjct: 296 I--SNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDA 353
Query: 422 PIIGEIRGTGLI--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMS 479
++ ++R G I + T N + + F E G+ +R G I +
Sbjct: 354 EMVADVRVLGAIGVVETTHPVNMAALQKFFVE-------------QGVWIRPFGKLIYLM 400
Query: 480 PPFIMSPEEVDELISKYGKALK 501
PP+I+ P+++ L + +A++
Sbjct: 401 PPYIILPQQLQRLTAAVNRAVQ 422
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 109/442 (24%), Positives = 201/442 (45%), Gaps = 30/442 (6%)
Query: 63 FKGHDMLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLV 122
F +L P+T+ V+P+V +EG + +G++ +D ++ W G + P+L
Sbjct: 8 FDQRHILHPYTSMTSPLPVYPVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLN 65
Query: 123 AAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV 182
AA +Q++ + + F T P+++L ++L+ M T + VF +SGS A + +K+
Sbjct: 66 AAMKSQIDAMS-HVMFGGITHAPAIELCRKLVAM-TPQPLECVFLADSGSVAVEVAMKMA 123
Query: 183 WYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPHYWR 241
Y A G +++F+ + YHG T A S+ ++H + P L P
Sbjct: 124 LQYWQAKGE-ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQ--- 179
Query: 242 YAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVV 301
+ E+ R L+ E A I + ++++ +
Sbjct: 180 ----SRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKIC 235
Query: 302 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEV 361
+ IL IADE+ FG G +F C+ I PD++ KAL+ M + A L + EV+E
Sbjct: 236 DREGILLIADEIATGFGATGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAET 295
Query: 362 IHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS 421
I + G F HG T+ G+P++CA A +L I + + +QV I + ++ + D+
Sbjct: 296 I--SNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDA 353
Query: 422 PIIGEIRGTGLI--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMS 479
++ ++R G I + T N + + F E G+ +R G I +
Sbjct: 354 EMVADVRVLGAIGVVETTHPVNMAALQKFFVE-------------QGVWIRPFGKLIYLM 400
Query: 480 PPFIMSPEEVDELISKYGKALK 501
PP+I+ P+++ L + +A++
Sbjct: 401 PPYIILPQQLQRLTAAVNRAVQ 422
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 109/442 (24%), Positives = 201/442 (45%), Gaps = 30/442 (6%)
Query: 63 FKGHDMLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLV 122
F +L P+T+ V+P+V +EG + +G++ +D ++ W G + P+L
Sbjct: 8 FDQRHILHPYTSMTSPLPVYPVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLN 65
Query: 123 AAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV 182
AA +Q++ + + F T P+++L ++L+ M T + VF +SGS A + +K+
Sbjct: 66 AAMKSQIDAMS-HVMFGGITHAPAIELCRKLVAM-TPQPLECVFLADSGSVAVEVAMKMA 123
Query: 183 WYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPHYWR 241
Y A G +++F+ + YHG T A S+ ++H + P L P
Sbjct: 124 LQYWQAKGE-ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQ--- 179
Query: 242 YAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVV 301
+ E+ R L+ E A I + ++++ +
Sbjct: 180 ----SRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKIC 235
Query: 302 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEV 361
+ IL IADE+ FGR G +F C+ I PD++ KAL+ M + A L + EV+E
Sbjct: 236 DREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAET 295
Query: 362 IHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS 421
I + G F HG T+ G+P++CA A +L I + + +QV I + ++ + D+
Sbjct: 296 I--SNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDA 353
Query: 422 PIIGEIRGTGLI--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMS 479
++ ++R G I + T N + + F E G+ + G I +
Sbjct: 354 EMVADVRVLGAIGVVETTHPVNMAALQKFFVE-------------QGVWIAPFGKLIYLM 400
Query: 480 PPFIMSPEEVDELISKYGKALK 501
PP+I+ P+++ L + +A++
Sbjct: 401 PPYIILPQQLQRLTAAVNRAVQ 422
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 109/442 (24%), Positives = 200/442 (45%), Gaps = 30/442 (6%)
Query: 63 FKGHDMLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLV 122
F + P+T+ V+P+V +EG + +G++ +D ++ W G + P+L
Sbjct: 8 FDERHIWHPYTSMTSPLPVYPVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLN 65
Query: 123 AAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV 182
AA +Q++ + + F T P+++L ++L+ M T + VF +SGS A + +K+
Sbjct: 66 AAMKSQIDAMS-HVMFGEITHAPAIELCRKLVAM-TPQPLECVFLADSGSVAVEVAMKMA 123
Query: 183 WYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPHYWR 241
Y +A G + +F+ + YHG T A S+ ++H + P L P
Sbjct: 124 LQYWDAKGE-ARDRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQ--- 179
Query: 242 YAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVV 301
+ E+ R L+ E A I + ++++ +
Sbjct: 180 ----SRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKIC 235
Query: 302 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEV 361
+ IL IADE+ FGR G +F C+ I PD++ KAL+ M + A L + EV+E
Sbjct: 236 DREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAET 295
Query: 362 IHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS 421
I G F HG T+ G+P++CA A +L I + + +QV I + ++ + D+
Sbjct: 296 I--SDGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDA 353
Query: 422 PIIGEIRGTGLI--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMS 479
++ ++R G I + T N + + F E G+ +R G I +
Sbjct: 354 EMVADVRVLGAIGVVETTHPVNMAALQKFFVE-------------QGVWIRPFGKLIYLM 400
Query: 480 PPFIMSPEEVDELISKYGKALK 501
PP+I+ P+++ L + +A++
Sbjct: 401 PPYIILPQQLQRLTAAVNRAVQ 422
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 108/442 (24%), Positives = 201/442 (45%), Gaps = 30/442 (6%)
Query: 63 FKGHDMLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLV 122
F +L P+T+ V+P+V +EG + +G++ +D ++ W G + P+L
Sbjct: 8 FDQRHILHPYTSMTSPLPVYPVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLN 65
Query: 123 AAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV 182
AA +Q++ + + F T P+++L ++L+ M T + VF +SGS A + +K+
Sbjct: 66 AAMKSQIDAMS-HVMFGGITHAPAIELCRKLVAM-TPQPLECVFLADSGSVAVEVAMKMA 123
Query: 183 WYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPHYWR 241
Y A G +++F+ + +HG T A S+ ++H + P L P
Sbjct: 124 LQYWQAKGE-ARQRFLTFRNGFHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQ--- 179
Query: 242 YAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVV 301
+ E+ R L+ E A I + ++++ +
Sbjct: 180 ----SRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKIC 235
Query: 302 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEV 361
+ IL IADE+ FGR G +F C+ I PD++ AL+ M + A L + EV+E
Sbjct: 236 DREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAET 295
Query: 362 IHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS 421
I + G F HG T+ G+P++CA A +L I + + +QV I + ++ + D+
Sbjct: 296 I--SNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDA 353
Query: 422 PIIGEIRGTGLI--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMS 479
++ ++R G I + T N + + F E G+ +R G I +
Sbjct: 354 EMVADVRVLGAIGVVETTHPVNMAALQKFFVE-------------QGVWIRPFGKLIYLM 400
Query: 480 PPFIMSPEEVDELISKYGKALK 501
PP+I+ P+++ L + +A++
Sbjct: 401 PPYIILPQQLQRLTAAVNRAVQ 422
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 135 bits (339), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 108/442 (24%), Positives = 201/442 (45%), Gaps = 30/442 (6%)
Query: 63 FKGHDMLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLV 122
F +L P+T+ V+P+V +EG + +G++ +D ++ W G + P+L
Sbjct: 8 FDQRHILHPYTSMTSPLPVYPVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLN 65
Query: 123 AAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV 182
AA +Q++ + + F T P+++L ++L+ M T + VF +SGS A + +K+
Sbjct: 66 AAMKSQIDAMS-HVMFGGITHAPAIELCRKLVAM-TPQPLECVFLADSGSVAVEVAMKMA 123
Query: 183 WYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP-ALHQKFDLPAPFVLHTDCPHYWR 241
Y A G +++F+ + YHG T A S+ ++H + P L P
Sbjct: 124 LQYWQAKGE-ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQ--- 179
Query: 242 YAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVV 301
+ E+ R L+ E A I + ++++ +
Sbjct: 180 ----SRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKIC 235
Query: 302 KKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEV 361
+ IL IADE+ FG+ G +F C+ I PD++ AL+ M + A L + EV+E
Sbjct: 236 DREGILLIADEIATGFGKTGKLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAET 295
Query: 362 IHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS 421
I + G F HG T+ G+P++CA A +L I + + +QV I + ++ + D+
Sbjct: 296 I--SNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDA 353
Query: 422 PIIGEIRGTGLI--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMS 479
++ ++R G I + T N + + F E G+ +R G I +
Sbjct: 354 EMVADVRVLGAIGVVETTHPVNMAALQKFFVE-------------QGVWIRPFGKLIYLM 400
Query: 480 PPFIMSPEEVDELISKYGKALK 501
PP+I+ P+++ L + +A++
Sbjct: 401 PPYIILPQQLQRLTAAVNRAVQ 422
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 108/422 (25%), Positives = 179/422 (42%), Gaps = 48/422 (11%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HSFWNR 141
P+ +E+ +G Y++DV G+KY D L+ + G P++V A +Q++ L +F+N
Sbjct: 59 PVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNN 118
Query: 142 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNALGRPNKKKFIA 199
+ +L KV N+G EA +T KL W Y + K K +
Sbjct: 119 VLGEYEEYITKLFNYH------KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVF 172
Query: 200 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 259
++ G TL A S S P + F PF+ D Y N+
Sbjct: 173 AAGNFWGRTLSAISSSTDPTSYDGF---GPFMPGFDIIPY------------------ND 211
Query: 260 LEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGR 319
L L +AAF+ E Y V+ + ++ +LFIADE+ R
Sbjct: 212 LPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLAR 271
Query: 320 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 379
G D +++PD+V KALS P+ A+L ++ I HG TY
Sbjct: 272 TGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPG-------EHGSTYG 324
Query: 380 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFA 439
G+P+ C VAI AL++ +E N+ E +K+ ++ + S ++ +RG GL+
Sbjct: 325 GNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLP-SDVVTAVRGKGLLNAIVIK 383
Query: 440 DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-VSGDNIMMSPPFIMSPEEVDELISKYGK 498
+ K + W + + +G+L + GD I +PP ++ +E+ E I K
Sbjct: 384 ETKDWD-----AWKV----CLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINK 434
Query: 499 AL 500
+
Sbjct: 435 TI 436
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/422 (25%), Positives = 178/422 (42%), Gaps = 48/422 (11%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HSFWNR 141
P+ +E+ +G Y++DV G+KY D L+ G P++V A +Q++ L +F+N
Sbjct: 59 PVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNN 118
Query: 142 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNALGRPNKKKFIA 199
+ +L KV N+G EA +T KL W Y + K K +
Sbjct: 119 VLGEYEEYITKLFNYH------KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVF 172
Query: 200 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 259
++ G TL A S S P + F PF+ D Y N+
Sbjct: 173 AAGNFWGRTLSAISSSTDPTSYDGF---GPFMPGFDIIPY------------------ND 211
Query: 260 LEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGR 319
L L +AAF+ E Y V+ + ++ +LFIADE+ R
Sbjct: 212 LPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLAR 271
Query: 320 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 379
G D +++PD+V KALS P+ A+L ++ I HG TY
Sbjct: 272 TGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPG-------EHGSTYG 324
Query: 380 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFA 439
G+P+ C VAI AL++ +E N+ E +K+ ++ + S ++ +RG GL+
Sbjct: 325 GNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLP-SDVVTAVRGKGLLNAIVIK 383
Query: 440 DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-VSGDNIMMSPPFIMSPEEVDELISKYGK 498
+ K + W + + +G+L + GD I +PP ++ +E+ E I K
Sbjct: 384 ETKDWD-----AWKV----CLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINK 434
Query: 499 AL 500
+
Sbjct: 435 TI 436
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 108/422 (25%), Positives = 178/422 (42%), Gaps = 48/422 (11%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HSFWNR 141
P+ +E+ +G Y++DV G+KY D L+ G P++V A +Q++ L +F+N
Sbjct: 22 PVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNN 81
Query: 142 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNALGRPNKKKFIA 199
+ +L KV N+G EA +T KL W Y + K K +
Sbjct: 82 VLGEYEEYITKLFNYH------KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVF 135
Query: 200 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 259
++ G TL A S S P + F PF+ D Y N+
Sbjct: 136 AAGNFWGRTLSAISSSTDPTSYDGF---GPFMPGFDIIPY------------------ND 174
Query: 260 LEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGR 319
L L +AAF+ E Y V+ + ++ +LFIADE+ R
Sbjct: 175 LPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLAR 234
Query: 320 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 379
G D +++PD+V KALS P+ A+L ++ I HG TY
Sbjct: 235 TGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPG-------EHGSTYG 287
Query: 380 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFA 439
G+P+ C VAI AL++ +E N+ E +K+ ++ + S ++ +RG GL+
Sbjct: 288 GNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLP-SDVVTAVRGKGLLNAIVIK 346
Query: 440 DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-VSGDNIMMSPPFIMSPEEVDELISKYGK 498
+ K + W + + +G+L + GD I +PP ++ +E+ E I K
Sbjct: 347 ETKDWD-----AWKV----CLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINK 397
Query: 499 AL 500
+
Sbjct: 398 TI 399
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 107/422 (25%), Positives = 178/422 (42%), Gaps = 48/422 (11%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY-HSFWNR 141
P+ +E+ +G Y++DV G+KY D L+ + G P++V A +Q++ L +F+N
Sbjct: 59 PVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNN 118
Query: 142 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNALGRPNKKKFIA 199
+ +L KV N+G EA +T KL W Y + K K +
Sbjct: 119 VLGEYEEYITKLFNYH------KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVF 172
Query: 200 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 259
++ G TL A S S P + F PF+ D Y N+
Sbjct: 173 AAGNFWGRTLSAISSSTDPTSYDGF---GPFMPGFDIIPY------------------ND 211
Query: 260 LEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGR 319
L L +AAF+ E Y V+ + ++ +LFIADE+ R
Sbjct: 212 LPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLAR 271
Query: 320 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 379
G D +++PD+V KALS P+ A+L ++ I H TY
Sbjct: 272 TGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPG-------EHFSTYG 324
Query: 380 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFA 439
G+P+ C VAI AL++ +E N+ E +K+ ++ + S ++ +RG GL+
Sbjct: 325 GNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLP-SDVVTAVRGKGLLNAIVIK 383
Query: 440 DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR-VSGDNIMMSPPFIMSPEEVDELISKYGK 498
+ K + W + + +G+L + GD I +PP ++ +E+ E I K
Sbjct: 384 ETKDWD-----AWKV----CLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINK 434
Query: 499 AL 500
+
Sbjct: 435 TI 436
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/417 (24%), Positives = 182/417 (43%), Gaps = 59/417 (14%)
Query: 82 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 141
H L+I + +G+ V+D G +Y+D + G LG P +V A Q TL
Sbjct: 27 HDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQ---- 82
Query: 142 TTKPSLDLAKELLEMFTA---SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 198
T P+ + E TA ++ +VF NSG+EAN+ +K + +KKF+
Sbjct: 83 -TLPT-PMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHT------GRKKFV 134
Query: 199 ARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 258
A + + G T+ + S++ P + F P V + Y N
Sbjct: 135 AAMRGFSGRTMGSLSVTWEPKYREPF---LPLVEPVEFIPY------------------N 173
Query: 259 NLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFG 318
++E L ET AA I E + + + ++ L I DE+ G
Sbjct: 174 DVEALKRAVDEET-AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMG 232
Query: 319 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 378
R G F + + I PD+++ AKAL +P+G ++ EV + ++ HG T+
Sbjct: 233 RTGKRFAFEHFGIVPDILTLAKALGGG-VPLGVAVMREEV-------ARSMPKGGHGTTF 284
Query: 379 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEF 438
G+P++ A + A++ + + E+ ++ P F + ++A SP I E+RG GL++G E
Sbjct: 285 GGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIP-SPKIREVRGMGLMVGLEL 343
Query: 439 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELIS 494
+ +P Y ++H +L +G ++ PP ++ E+++ ++
Sbjct: 344 KEKAAP------------YIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVE 388
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/407 (22%), Positives = 176/407 (43%), Gaps = 33/407 (8%)
Query: 92 SYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAK 151
+ + D + LD+++ W G P L A T QL + + F T +P+ LAK
Sbjct: 67 TLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN-HVMFGGLTHEPAARLAK 125
Query: 152 ELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA 211
L+++ T + + VFF++SGS + + K+ Y G P K++ + + YHG T +A
Sbjct: 126 LLVDI-TPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLA 184
Query: 212 ASL----SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 267
S+ G+ +L D+ A V P +Y + E + +
Sbjct: 185 MSICDPHGGMHSLWT--DVLAAQVFAPQVP------------RDYDPAYSAAFEAQLAQH 230
Query: 268 GPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCD 327
E A + Y ++ + ++Y++L I DE+ FGR G +F D
Sbjct: 231 AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAAD 290
Query: 328 KYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 387
+ PD++ KAL+ Y+ + A L + +V+ I + G+ HG T+ +P++CAV
Sbjct: 291 HAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTI--SAGAAGALMHGPTFMANPLACAV 348
Query: 388 AIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEP 447
++ ++++ ++ ++ ++A G+ P + ++R G I G D
Sbjct: 349 SVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAI-GVIECDRPVDLAV 407
Query: 448 FPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELIS 494
P G+ +R + + PP+I +P E+ ++ S
Sbjct: 408 ATPA----------ALDRGVWLRPFRNLVYAMPPYICTPAEITQITS 444
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 125 bits (313), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 92/407 (22%), Positives = 175/407 (42%), Gaps = 33/407 (8%)
Query: 92 SYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAK 151
+ + D + LD+++ W G P L A T QL + + F T +P+ LAK
Sbjct: 72 TLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN-HVMFGGLTHEPAARLAK 130
Query: 152 ELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA 211
L+++ T + + VFF++SGS + + K+ Y G P K++ + + YHG T +A
Sbjct: 131 LLVDI-TPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLA 189
Query: 212 ASL----SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 267
S+ G+ +L D+ A V P +Y + E + +
Sbjct: 190 MSICDPHGGMHSLWT--DVLAAQVFAPQVP------------RDYDPAYSAAFEAQLAQH 235
Query: 268 GPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCD 327
E A + Y ++ + ++Y++L I DE+ FGR G +F D
Sbjct: 236 AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAAD 295
Query: 328 KYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 387
+ PD++ KAL+ Y+ + A L + +V+ I + G+ G T+ +P++CAV
Sbjct: 296 HAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTI--SAGAAGALMRGPTFMANPLACAV 353
Query: 388 AIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEP 447
++ ++++ ++ ++ ++A G+ P + ++R G I G D
Sbjct: 354 SVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAI-GVIECDRPVDLAV 412
Query: 448 FPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELIS 494
P G+ +R + + PP+I +P E+ ++ S
Sbjct: 413 ATPA----------ALDRGVWLRPFRNLVYAMPPYICTPAEITQITS 449
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/407 (22%), Positives = 175/407 (42%), Gaps = 33/407 (8%)
Query: 92 SYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAK 151
+ + D + LD+++ W G P L A T QL + + F T +P+ LAK
Sbjct: 47 TLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN-HVMFGGLTHEPAARLAK 105
Query: 152 ELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIA 211
L+++ T + + VFF++SGS + + K+ Y G P K++ + + YHG T +A
Sbjct: 106 LLVDI-TPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLA 164
Query: 212 ASL----SGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 267
S+ G+ +L D+ A V P +Y + E + +
Sbjct: 165 MSICDPHGGMHSLWT--DVLAAQVFAPQVP------------RDYDPAYSAAFEAQLAQH 210
Query: 268 GPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCD 327
E A + Y ++ + ++Y++L I DE+ FGR G +F D
Sbjct: 211 AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAAD 270
Query: 328 KYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAV 387
+ PD++ KAL+ Y+ + A L + +V+ I + G+ G T+ +P++CAV
Sbjct: 271 HAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTI--SAGAAGALMRGPTFMANPLACAV 328
Query: 388 AIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEP 447
++ ++++ ++ ++ ++A G+ P + ++R G I G D
Sbjct: 329 SVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAI-GVIECDRPVDLAV 387
Query: 448 FPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELIS 494
P G+ +R + + PP+I +P E+ ++ S
Sbjct: 388 ATPA----------ALDRGVWLRPFRNLVYAMPPYICTPAEITQITS 424
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 104/424 (24%), Positives = 190/424 (44%), Gaps = 39/424 (9%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 142
P+ + ++ G V D +G + +D +G+ T +G S PR+V A Q+ F H+ + T
Sbjct: 61 PVFVVRAGGGIVEDADGNRLIDLGSGIAVTTIGNSAPRVVDAVRDQVEQ--FTHTCFMVT 118
Query: 143 T-KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 201
+ + +A++L + S + NSG+EA + +K+ + K+ +A
Sbjct: 119 PYEQYVAVAEQLNRITPGSGEKRTVLFNSGAEAVENSIKVARAHTR------KQAVVAFD 172
Query: 202 KSYHGSTLIAASLSGLPALHQK-FDLPAPFVLHTDCPHYWR---YAHPGETEEEYSTRLA 257
+YHG T + +L+ ++ F AP + + +R T+ E + A
Sbjct: 173 YAYHGRTNLTMALTAKSMPYKSGFGPFAPEIYRAPVSYPYRDNLLDKDIATDGELAAERA 232
Query: 258 NNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAF 317
NL D + G +AA I E + +Q + D++FIADEV F
Sbjct: 233 INLIDKQI--GAANLAAVIIEPIAGEGGFIVPADGFLPALQRWCRDNDVVFIADEVQTGF 290
Query: 318 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT 377
R G MF CD +++PDL+ A ++ + P+ A+ E+ + H+ G T
Sbjct: 291 ARTGAMFACDHENVEPDLIVTAXGIADGF-PLSAVTGRAEIMDAPHTS-------GLGGT 342
Query: 378 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQD---GVKAFSDSPIIGEIRGTGLIL 434
+ G+PV+CA A+ ++ + +VE+ +I D ++A D +G++RG G ++
Sbjct: 343 FGGNPVACAAALATIETIERDGMVERARQIERLVMDRLLRLQAADDR--LGDVRGRGAMI 400
Query: 435 GTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---GDNIMMSPPFIMSPEEVDE 491
E + + P+ + A G++V G+ I + PP +S DE
Sbjct: 401 AMELVKSGTAE----PDAALTQKLAAAAHAAGVIVLTCGMFGNVIRLLPPLTIS----DE 452
Query: 492 LISK 495
L+S+
Sbjct: 453 LLSE 456
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 116/440 (26%), Positives = 192/440 (43%), Gaps = 34/440 (7%)
Query: 70 APFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQL 129
A +AG ST P+ ++G + D +G ++D AG+ T +G S P + AA Q
Sbjct: 36 AAVSAGVGST--APVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQA 93
Query: 130 NTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAK-VFFTNSGSEANDTQVKLVWYYNNA 188
F H+ + T ELL T K NSG+EA + +K+ A
Sbjct: 94 TH--FTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARL---A 148
Query: 189 LGRPNKKKFIARQKSYHGSTLIAASLSG--LPALHQKFDLPAPFVLHTDCPHYWRYAHPG 246
GRP +A +YHG T + +L+ +P +F AP V + R PG
Sbjct: 149 TGRP---AVVAFDNAYHGRTNLTMALTAKSMP-YKSQFGPFAPEVYRMPASYPLRD-EPG 203
Query: 247 ETEEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDI 306
T EE + R + +E I G +++AA I E + + A + +
Sbjct: 204 LTGEEAARRAISRIETQI---GAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGV 260
Query: 307 LFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQS 366
+FIADEV F R G F + I PD+V+ A ++ MP+ A+ E+ + +++
Sbjct: 261 VFIADEVQTGFARTGAWFASEHEGIVPDIVTMAXGIAGG-MPLSAVTGRAELMDAVYAGG 319
Query: 367 NTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIG 425
TY G+PV+CA A+ AL + +E ++ + I + A ++ IIG
Sbjct: 320 LG-------GTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIG 372
Query: 426 EIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---GDNIMMSPPF 482
E+RG G +L E + P+ + A+ G+L+ G+ I + PP
Sbjct: 373 EVRGRGAMLAIEIVKPGT----LEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPL 428
Query: 483 IMSPEEVDELISKYGKALKA 502
++ + +DE I+ ++A
Sbjct: 429 VIGDDLLDEGITALSDIIRA 448
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/403 (25%), Positives = 176/403 (43%), Gaps = 36/403 (8%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 142
P+ ++ G V DV+G + +D +G+ T +G S P++V A +Q+ F H+ + T
Sbjct: 44 PVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGD--FTHTCFMVT 101
Query: 143 TKPSLDLAKELLEMFT---ASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 199
E L T K + +F NSGSEA + VK+ + + K +A
Sbjct: 102 PYEGYVAVCEQLNRLTPVRGDKRSALF--NSGSEAVENAVKIARSHTH------KPAVVA 153
Query: 200 RQKSYHGSTLIAASLSG--LPALHQKFDLPAPFVLHTDCPHYWRYAHPGE---TEEEYST 254
+YHG T + +L+ +P F AP + + +R A G+ T+ E +
Sbjct: 154 FDHAYHGRTNLTMALTAKVMP-YKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAA 212
Query: 255 RLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVI 314
+ A + D + G + +AA + E + + +K D++FIADEV
Sbjct: 213 KRAITVIDKQI--GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQ 270
Query: 315 CAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSH 374
F R G MF C+ I PDL+ A ++ +P+ A+ E+ + H
Sbjct: 271 TGFARTGAMFACEHEGIDPDLIVTAXGIAGG-LPLSAVTGRAEIMDSPHVS-------GL 322
Query: 375 GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLI 433
G TY G+P++CA A+ ++ + +V + +I +D + ++ IG++RG G +
Sbjct: 323 GGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAM 382
Query: 434 LGTEF--ADNKSPNEPFPPEWGIGAYFGA----QCEKHGMLVR 470
+ E A P+ GA+ C +G +VR
Sbjct: 383 IAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVR 425
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 109/439 (24%), Positives = 182/439 (41%), Gaps = 50/439 (11%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 142
P+ +E ++G + DV+G ++D +G+ T++G S+P +VAA F H+ + T
Sbjct: 47 PVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAH--FTHTCFMVT 104
Query: 143 TKPSLDLAKELLEMFTASKMAK--VFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIAR 200
E L T AK V F NSG+EA + VK+ A GR +A
Sbjct: 105 PYEGYVAVTEQLNRLTPGDHAKRTVLF-NSGAEAVENAVKVARL---ATGR---DAVVAF 157
Query: 201 QKSYHGSTLIAASLSGLPALHQ-KFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 259
+YHG T + +L+ ++ F AP V + +R +P T E + R
Sbjct: 158 DHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITM 217
Query: 260 LEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGR 319
+E I G + +AA I E + + K+ I+FIADEV F R
Sbjct: 218 IEKQI---GGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCR 274
Query: 320 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF--- 376
G F D + PD+++ AK ++ +P+ AI ++ + +H +
Sbjct: 275 TGEWFAVDHEGVVPDIITMAKGIAGG-LPLSAITGRADLLDAVHPGGLGGTYGGNPVACA 333
Query: 377 -------TYSGHPVSC-AVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR 428
T H ++ A IE L + K R + +++ ++G+IR
Sbjct: 334 AALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSA------------GGGSVVGDIR 381
Query: 429 GTGLILGTEFAD--NKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS---GDNIMMSPPFI 483
G G +L E +K PN A C K G+++ G+ I + PP +
Sbjct: 382 GRGAMLAIELVQPGSKEPNAELT------KAVAAACLKEGVIILTCGTYGNVIRLLPPLV 435
Query: 484 MSPEEVDELISKYGKALKA 502
+S E + + + A+KA
Sbjct: 436 ISDELLIDGLEVLAAAIKA 454
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 96/416 (23%), Positives = 175/416 (42%), Gaps = 33/416 (7%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 142
P+ + + G + D +G + +D +G+ T +G S P +V A T Q+ F H+ + T
Sbjct: 51 PVYVVAAGGGVLADADGNQLIDFGSGIAVTTVGNSAPAVVDAVTQQVAA--FTHTCFMVT 108
Query: 143 T-KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 201
+ + +A+ L + + NSG+EA + VK+ Y ++ +
Sbjct: 109 PYEGYVKVAEHLNRLTPGDHEKRTALFNSGAEAVENAVKIARAYTR------RQAVVVFD 162
Query: 202 KSYHGSTLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 260
+YHG T + +++ A +Q + PF + ++P E A +
Sbjct: 163 HAYHGRTNLTMAMT---AKNQPYKHGFGPFANEV---YRVPTSYPFRDGETDGAAAAAHA 216
Query: 261 EDLILKE-GPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGR 319
DLI K+ G + +AA + E + +Q +F+ADEV F R
Sbjct: 217 LDLINKQVGADNVAAVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQTGFAR 276
Query: 320 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 379
G +F C+ ++ PDL+ AK ++ +P+ A+ E+ + S TY
Sbjct: 277 TGALFACEHENVVPDLIVTAKGIAGG-LPLSAVTGRAEIMDGPQSGGLGG-------TYG 328
Query: 380 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEF 438
G+P++CA A+ + + N+V + I + A + + P IGE+RG G ++ E
Sbjct: 329 GNPLACAAALAVIDTIERENLVARARAIGETMLSRLGALAAADPRIGEVRGRGAMIAVEL 388
Query: 439 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIM-MSPPFIMSPEEVDE 491
+ P+ + A G++V G N++ PP M +DE
Sbjct: 389 VKPGTTE----PDADLTKRVAAAAHAQGLVVLTCGTYGNVLRFLPPLSMPDHLLDE 440
>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
Length = 434
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 139/337 (41%), Gaps = 38/337 (11%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 142
P+ E+ +G+Y +DV+G KY+D LA G + P + A T Y +
Sbjct: 38 PIAXERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGT----P 93
Query: 143 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 202
T + AK L E A + KV F NSG+EA T +++ Y GR KF
Sbjct: 94 TALEVKFAKXLKEAXPA--LDKVRFVNSGTEAVXTTIRVARAYT---GRTKIXKFAG--- 145
Query: 203 SYHGST--LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 260
YHG + ++ A+ SG P L T P +E T NN+
Sbjct: 146 CYHGHSDLVLVAAGSG------------PSTLGTPD----SAGVPQSIAQEVITVPFNNV 189
Query: 261 EDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFG 318
E L L + +AA + E + EKV +V + L I DEVI AF
Sbjct: 190 ETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF- 248
Query: 319 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 378
R D + PDL + + +PIGA E+ E Q LG T
Sbjct: 249 RFXYGGAQDLLGVTPDLTALGXVIGGG-LPIGAYGGKKEIXE----QVAPLGPAYQAGTX 303
Query: 379 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV 415
+G+P S A I L++ ++ + E+++++ + G+
Sbjct: 304 AGNPASXASGIACLEVLQQEGLYEKLDELGATLEKGI 340
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 82/352 (23%), Positives = 149/352 (42%), Gaps = 46/352 (13%)
Query: 76 WQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPF 134
++S P+V ++ + +Y +DV+G +Y+D + G W A+ G + P ++ A +
Sbjct: 28 FKSVGGQPIVFDRVKDAYAWDVDGNRYIDYV-GTWGPAICGHAHPEVIEALKVAMEK--- 83
Query: 135 YHSFWNRTTKPSLDLAKELLEMFTAS--KMAKVFFTNSGSEANDTQVKLVWYYNNALGRP 192
+ L L EM + + V F NSG+EA ++L+ Y
Sbjct: 84 -----GTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYT------ 132
Query: 193 NKKKFIARQKSYHG--STLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWRYAHPGETE 249
+ K I + YHG + + SG+ L LP +P V P +T
Sbjct: 133 GRDKIIKFEGCYHGHADMFLVKAGSGVATL----GLPSSPGV-------------PKKTT 175
Query: 250 EEYSTRLANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDIL 307
T N+LE + + E P IA I E + E ++ + ++D L
Sbjct: 176 ANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDAL 235
Query: 308 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 367
+ DEVI F R+ +K+ + PDL + K + +P+GA E+ +++
Sbjct: 236 LVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPA-- 291
Query: 368 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS 419
G T SG+P++ I+ L++ ++ E +++I + DG+ A +
Sbjct: 292 --GPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIA 341
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 149/347 (42%), Gaps = 44/347 (12%)
Query: 76 WQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTAL-GGSEPRLVAAATAQLNTLPF 134
++S P+V + +G++++DV+G +Y+D + G W A+ G + P ++ A A L
Sbjct: 12 FKSVGGQPIVFDHVKGAHIWDVDGNQYIDYV-GSWGPAIVGHAHPEVIDALHAALEKGTS 70
Query: 135 YHSFWNRTTKPSLDLAKELLEMFTAS--KMAKVFFTNSGSEANDTQVKLVWYYNNALGRP 192
+ + P L L L EM A+ + V F NSG+EA ++L+ Y
Sbjct: 71 FGA-------PCL-LENILAEMVIAAVPSVEMVRFVNSGTEACMAVLRLMRAYT------ 116
Query: 193 NKKKFIARQKSYHG--STLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 250
++K I + YHG + + SG+ L LP D P +
Sbjct: 117 QREKVIKFEGCYHGHADMFLVKAGSGVATL----GLP-------DSPGVPKATTAATLTA 165
Query: 251 EYSTRLANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILF 308
Y N+LE + + ++ P IA I E + E ++ + K+Y L
Sbjct: 166 PY-----NDLEAVSRLFEQYPNDIAGVILEPVVGNAGFIPPDAGFLEGLRELTKQYGALL 220
Query: 309 IADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNT 368
+ DEV+ F R+ +K+ + PDL + K + +P+GA E+ +++
Sbjct: 221 VFDEVMTGF-RIAYGGAQEKFGVTPDLTTLGKVIGGG-LPVGAYGGRAEIMKMVAPA--- 275
Query: 369 LGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV 415
G T SG+P++ I+ L+I E +++I K G+
Sbjct: 276 -GPVYQAGTLSGNPLAMTAGIKTLEILSRPGSYEHLDRITGKLVQGL 321
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 149/352 (42%), Gaps = 46/352 (13%)
Query: 76 WQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPF 134
++S P+V ++ + +Y +DV+G +Y+D + G W A+ G + P ++ A +
Sbjct: 28 FKSVGGQPIVFDRVKDAYAWDVDGNRYIDYV-GTWGPAICGHAHPEVIEALKVAMEK--- 83
Query: 135 YHSFWNRTTKPSLDLAKELLEMFTAS--KMAKVFFTNSGSEANDTQVKLVWYYNNALGRP 192
+ L L EM + + V F NSG+EA ++++ Y
Sbjct: 84 -----GTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYT------ 132
Query: 193 NKKKFIARQKSYHG--STLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWRYAHPGETE 249
+ K I + YHG + + SG+ L LP +P V P +T
Sbjct: 133 GRDKIIKFEGCYHGHADMFLVKAGSGVATL----GLPSSPGV-------------PKKTT 175
Query: 250 EEYSTRLANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDIL 307
T N+LE + + E P IA I E + E ++ + ++D L
Sbjct: 176 ANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDAL 235
Query: 308 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 367
+ DEVI F R+ +K+ + PDL + K + +P+GA E+ +++
Sbjct: 236 LVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPA-- 291
Query: 368 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS 419
G T SG+P++ I+ L++ ++ E +++I + DG+ A +
Sbjct: 292 --GPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIA 341
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 149/352 (42%), Gaps = 46/352 (13%)
Query: 76 WQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPF 134
++S P+V ++ + +Y +DV+G +Y+D + G W A+ G + P ++ A +
Sbjct: 33 FKSVGGQPIVFDRVKDAYAWDVDGNRYIDYV-GTWGPAICGHAHPEVIEALKVAMEK--- 88
Query: 135 YHSFWNRTTKPSLDLAKELLEMFTAS--KMAKVFFTNSGSEANDTQVKLVWYYNNALGRP 192
+ L L EM + + V F NSG+EA ++L+ Y
Sbjct: 89 -----GTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYT------ 137
Query: 193 NKKKFIARQKSYHG--STLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWRYAHPGETE 249
+ K I + YHG + + SG+ L LP +P V P +T
Sbjct: 138 GRDKIIKFEGCYHGHADMFLVKAGSGVATL----GLPSSPGV-------------PKKTT 180
Query: 250 EEYSTRLANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDIL 307
T N+LE + + E P IA I E + E ++ + ++D L
Sbjct: 181 ANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDAL 240
Query: 308 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 367
+ DEV+ F R+ +K+ + PDL + K + +P+GA E+ +++
Sbjct: 241 LVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPA-- 296
Query: 368 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS 419
G T SG+P++ I+ L++ ++ E +++I + DG+ A +
Sbjct: 297 --GPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIA 346
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 149/352 (42%), Gaps = 46/352 (13%)
Query: 76 WQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPF 134
++S P+V ++ + +Y +DV+G +Y+D + G W A+ G + P ++ A +
Sbjct: 28 FKSVGGQPIVFDRVKDAYAWDVDGNRYIDYV-GTWGPAICGHAHPEVIEALKVAMEK--- 83
Query: 135 YHSFWNRTTKPSLDLAKELLEMFTAS--KMAKVFFTNSGSEANDTQVKLVWYYNNALGRP 192
+ L L EM + + V F NSG+EA ++++ Y
Sbjct: 84 -----GTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYT------ 132
Query: 193 NKKKFIARQKSYHG--STLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWRYAHPGETE 249
+ K I + YHG + + SG+ L LP +P V P +T
Sbjct: 133 GRDKIIKFEGCYHGHADMFLVKAGSGVATL----GLPSSPGV-------------PKKTT 175
Query: 250 EEYSTRLANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDIL 307
T N+LE + + E P IA I E + E ++ + ++D L
Sbjct: 176 ANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDAL 235
Query: 308 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 367
+ DEV+ F R+ +K+ + PDL + K + +P+GA E+ +++
Sbjct: 236 LVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPA-- 291
Query: 368 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS 419
G T SG+P++ I+ L++ ++ E +++I + DG+ A +
Sbjct: 292 --GPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIA 341
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 149/352 (42%), Gaps = 46/352 (13%)
Query: 76 WQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPF 134
++S P+V ++ + +Y +DV+G +Y+D + G W A+ G + P ++ A +
Sbjct: 33 FKSVGGQPIVFDRVKDAYAWDVDGNRYIDYV-GTWGPAICGHAHPEVIEALKVAMEK--- 88
Query: 135 YHSFWNRTTKPSLDLAKELLEMFTAS--KMAKVFFTNSGSEANDTQVKLVWYYNNALGRP 192
+ L L EM + + V F NSG+EA ++++ Y
Sbjct: 89 -----GTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYT------ 137
Query: 193 NKKKFIARQKSYHG--STLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWRYAHPGETE 249
+ K I + YHG + + SG+ L LP +P V P +T
Sbjct: 138 GRDKIIKFEGCYHGHADMFLVKAGSGVATL----GLPSSPGV-------------PKKTT 180
Query: 250 EEYSTRLANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDIL 307
T N+LE + + E P IA I E + E ++ + ++D L
Sbjct: 181 ANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDAL 240
Query: 308 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 367
+ DEV+ F R+ +K+ + PDL + K + +P+GA E+ +++
Sbjct: 241 LVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPA-- 296
Query: 368 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFS 419
G T SG+P++ I+ L++ ++ E +++I + DG+ A +
Sbjct: 297 --GPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIA 346
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 98/424 (23%), Positives = 172/424 (40%), Gaps = 23/424 (5%)
Query: 77 QSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYH 136
Q PL I G+ + + NG++ +D L+G W A G + AA + P
Sbjct: 33 QKLRFFPLAISGGRGARLIEENGRELID-LSGAWGAASLGYGHPAIVAAVSAAAANPAGA 91
Query: 137 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 196
+ + + P++ LA+ LL F K++F +SGS+AN+ + + A GR
Sbjct: 92 TILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIV---KATGRSG--- 145
Query: 197 FIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 256
IA +YHG T+ + + SG Q A ++ P +R T + T L
Sbjct: 146 VIAFAGAYHGCTVGSMAFSGHSV--QADAAKADGLILLPYPDPYRPYRNDPTGDAILTLL 203
Query: 257 ANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICA 316
E L AAFI E + K + + + IL + DEV
Sbjct: 204 T---EKLAAVPAGSIGAAFI-EPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVG 259
Query: 317 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF 376
R G + + PD++ K L + +++P +E++ S +F+
Sbjct: 260 LARSGRLHCFEHEGFVPDILVLGKGLGGGLPL--SAVIAP--AEILDCAS----AFAMQ- 310
Query: 377 TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILG 435
T G+P+S A + L+ ++ + +DG+ + P+IG+IRG GL G
Sbjct: 311 TLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACG 370
Query: 436 TEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISK 495
E ++ EP E Y Q V ++G+ + +PP ++ ++ + +
Sbjct: 371 MELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDL 430
Query: 496 YGKA 499
+A
Sbjct: 431 LDRA 434
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 98/424 (23%), Positives = 172/424 (40%), Gaps = 23/424 (5%)
Query: 77 QSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYH 136
Q PL I G+ + + NG++ +D L+G W A G + AA + P
Sbjct: 20 QKLRFFPLAISGGRGARLIEENGRELID-LSGAWGAASLGYGHPAIVAAVSAAAANPAGA 78
Query: 137 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 196
+ + + P++ LA+ LL F K++F +SGS+AN+ + + A GR
Sbjct: 79 TILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIV---KATGRSG--- 132
Query: 197 FIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 256
IA +YHG T+ + + SG Q A ++ P +R T + T L
Sbjct: 133 VIAFAGAYHGCTVGSMAFSGHSV--QADAAKADGLILLPYPDPYRPYRNDPTGDAILTLL 190
Query: 257 ANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICA 316
E L AAFI E + K + + + IL + DEV
Sbjct: 191 T---EKLAAVPAGSIGAAFI-EPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVG 246
Query: 317 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF 376
R G + + PD++ K L + +++P +E++ S +F+
Sbjct: 247 LARSGRLHCFEHEGFVPDILVLGKGLGGGLPL--SAVIAP--AEILDCAS----AFAMQ- 297
Query: 377 TYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILG 435
T G+P+S A + L+ ++ + +DG+ + P+IG+IRG GL G
Sbjct: 298 TLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACG 357
Query: 436 TEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISK 495
E ++ EP E Y Q V ++G+ + +PP ++ ++ + +
Sbjct: 358 MELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDL 417
Query: 496 YGKA 499
+A
Sbjct: 418 LDRA 421
>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Aeropyrum Pernix
pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix
pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
Length = 434
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 132/324 (40%), Gaps = 40/324 (12%)
Query: 82 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 141
+P +++ EG+Y+Y V+G + +D + LG PR++ A L Y +
Sbjct: 38 YPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALARGWLYGA---- 93
Query: 142 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 201
+ + LA+++L M + F NSG+EA T ++L Y GR KF
Sbjct: 94 PGEAEVLLAEKILGYVKRGGMIR--FVNSGTEATMTAIRLARGYT---GRDLILKFDGCY 148
Query: 202 KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA---N 258
H + L+AA + HY G E L N
Sbjct: 149 HGSHDAVLVAAG--------------------SAAAHYGVPTSAGVPEAVARLTLVTPYN 188
Query: 259 NLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICA 316
++E L + E + IA I E + +Q + ++ L I DEV+
Sbjct: 189 DVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTG 248
Query: 317 FGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGF 376
F RLG ++I+ D++ K + + P+GA+ S EV ++ Q F+ G
Sbjct: 249 F-RLGLEGAQGYFNIEGDIIVLGKIIGGGF-PVGAVAGSREVMSLLTPQGKV---FNAG- 302
Query: 377 TYSGHPVSCAVAIEALKIYKERNI 400
T++ HP++ A + LK +E +
Sbjct: 303 TFNAHPITMAAGLATLKALEEEPV 326
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 141/322 (43%), Gaps = 38/322 (11%)
Query: 76 WQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY 135
++S D+ P+ +E+ +GS ++D++G +Y+D + LG + R+V + L + Y
Sbjct: 37 FKSVDMDPIFMERGKGSKIFDIDGNEYIDYVLSWGPLILGHTNDRVVES----LKKVAEY 92
Query: 136 HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 195
+ + T+ +LAK +++ + ++ ++ +SG+EA + ++L A G +
Sbjct: 93 GTSFGAPTEVENELAKLVIDRVPSVEIVRM--VSSGTEATMSALRL------ARGYTGRN 144
Query: 196 KFIARQKSY--HGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYS 253
K + + Y HG +L+ + SG+ L LP D P P +
Sbjct: 145 KILKFEGCYHGHGDSLLIKAGSGVATL----GLP-------DSP-----GVPEGIAKNTI 188
Query: 254 TRLANNLED--LILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIAD 311
T N+LE L ++ E IA I E + + ++ + ++Y L I D
Sbjct: 189 TVPYNDLESVKLAFQQFGEDIAGVIVEPVAGNMGVVPPQEGFLQGLRDITEQYGSLLIFD 248
Query: 312 EVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGS 371
EV+ F R+ + + PDL K + +P+GA E+ E I G
Sbjct: 249 EVMTGF-RVDYNCAQGYFGVTPDLTCLGKVIGGG-LPVGAYGGKAEIMEQIAPS----GP 302
Query: 372 FSHGFTYSGHPVSCAVAIEALK 393
T SG+P++ +E LK
Sbjct: 303 IYQAGTLSGNPLAMTAGLETLK 324
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 133/329 (40%), Gaps = 59/329 (17%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNT-LPFYHSFWNR 141
P + + EG+YV+D +G +YLD + LG + P+++A L L F
Sbjct: 35 PPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGLTF-----GA 89
Query: 142 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 201
+ + LAK++ + + + F NSG+EA + ++L Y GRP KF +
Sbjct: 90 PSPLEVALAKKVKRAYPFVDLVR--FVNSGTEATMSALRLARGYT---GRPYIVKF---R 141
Query: 202 KSYHGS-------------TLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGET 248
+YHG TL S +G+P + K L VL + P R
Sbjct: 142 GNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTL----VLEYNDPEGLRE------ 191
Query: 249 EEEYSTRLANNLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILF 308
+LK E IAA I E + + + K Y +L
Sbjct: 192 ---------------VLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLL 235
Query: 309 IADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNT 368
IADEV+ F RL + +KPDLV+ K L +P A E+ E +
Sbjct: 236 IADEVMTGF-RLAFGGATELLGLKPDLVTLGKILGGG-LPAAAYAGRREIMEKV----AP 289
Query: 369 LGSFSHGFTYSGHPVSCAVAIEALKIYKE 397
LG T SG+P++ A + L++ +E
Sbjct: 290 LGPVYQAGTLSGNPLAMAAGLATLELLEE 318
>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Yersinia Pestis Co92
Length = 429
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 133/338 (39%), Gaps = 38/338 (11%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 142
PL IE+++G+Y++DV+GK Y+D + LG + P A A + + SF
Sbjct: 36 PLFIERADGAYLFDVDGKAYIDYVGSWGPXILGHNHP---AIRQAVIEAVERGLSF-GAP 91
Query: 143 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 202
T+ + A+ + ++ + NSG+EA + ++L A G + K I +
Sbjct: 92 TEXEVKXAQLVTDLVPTXDXVRX--VNSGTEATXSAIRL------ARGYTGRDKIIKFEG 143
Query: 203 SYHG--STLIAASLSGLPALHQKFD--LPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 258
YHG L+ + SG L Q +P F HT Y A + E+Y
Sbjct: 144 CYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQY------ 197
Query: 259 NLEDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFG 318
P+ +A I E + ++A+ ++ L I DEV F
Sbjct: 198 ----------PQEVACIIVEPVAGNXNCIPPLPEFLPGLRALCDEFGALLIIDEVXTGF- 246
Query: 319 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 378
R+ D Y + PDL K + P+GA EV + G T
Sbjct: 247 RVALAGAQDYYHVIPDLTCLGKIIGGG-XPVGAFGGRREVXNALAPT----GPVYQAGTL 301
Query: 379 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVK 416
SG+P++ A L + + E + ++ G++
Sbjct: 302 SGNPIAXAAGFACLTEISQVGVYETLTELTDSLATGLR 339
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 149/368 (40%), Gaps = 36/368 (9%)
Query: 76 WQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY 135
++S +PL E+ +GS VYD++G +Y+D + G + R+V A L +
Sbjct: 29 FKSVGXNPLFXERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEA----LKAVAER 84
Query: 136 HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 195
+ + T+ LAK ++E + ++ + NSG+EA + ++L Y GR
Sbjct: 85 GTSFGAPTEIENKLAKLVIERVPSIEIVRX--VNSGTEATXSALRLARGYT---GRNKIL 139
Query: 196 KFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 255
KFI HG +L+ + SG+ L LP D P P + T
Sbjct: 140 KFIGCYHG-HGDSLLIKAGSGVATL----GLP-------DSP-----GVPEGVAKNTITV 182
Query: 256 LANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEV 313
N+LE + ++ + IA I E + E ++ V ++ L I DEV
Sbjct: 183 AYNDLESVKYAFEQFGDDIACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIFDEV 242
Query: 314 ICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFS 373
F R+ G Y + PDL K + +P+GA E I Q G
Sbjct: 243 XTGF-RVAYNCGQGYYGVTPDLTCLGKVIGGG-LPVGAYGGKAE----IXRQVAPSGPIY 296
Query: 374 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV-KAFSDSPIIGEIRGTGL 432
T SG+P++ A E L + VE K A + G+ KA I I G
Sbjct: 297 QAGTLSGNPLAXAAGYETLVQLTPESYVEFERK-AEXLEAGLRKAAEKHGIPHHINRAGS 355
Query: 433 ILGTEFAD 440
+G F D
Sbjct: 356 XIGIFFTD 363
>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
(D-Phgat) From Pseudomonas Strutzeri St-201
Length = 453
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 146/341 (42%), Gaps = 41/341 (12%)
Query: 73 TAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTL 132
TA ++ D H L I ++G + DV+G YLD G LG PR+ AA L+
Sbjct: 30 TADTRAFDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALS-- 87
Query: 133 PFYHSFWNRTTKP-SLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR 191
H + P + A+ ++ F + + K+ FT SG+E +++ +
Sbjct: 88 ---HGVQYAASHPLEVRWAERIVAAFPSIR--KLRFTGSGTETTLLALRVARAFTG---- 138
Query: 192 PNKKKFIAR-QKSYHGSTLIAASLSGLPALHQKFD-LPAPFVLHTDCPHYWRYAHPGETE 249
++ I R + YHG +AS + FD PAP VL P T
Sbjct: 139 ---RRMILRFEGHYHGWHDFSAS-----GYNSHFDGQPAPGVL------------PETTA 178
Query: 250 EEYSTRLANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDIL 307
R +++E + + IAAFIAE ++ + + ++Y L
Sbjct: 179 NTLLIR-PDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGAL 237
Query: 308 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 367
FI DEVI F R+G ++PDL AKA S+ +P G + +V V+ S+
Sbjct: 238 FILDEVISGF-RVGNHGMQALLDVQPDLTCLAKA-SAGGLPGGILGGREDVMGVLSRGSD 295
Query: 368 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIA 408
H T++G+P++ A AI A+ E ++ ++N +
Sbjct: 296 R--KVLHQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLG 334
>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb).
pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb)
Length = 831
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 91/407 (22%), Positives = 155/407 (38%), Gaps = 55/407 (13%)
Query: 144 KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWY-----YNNALGRPNKK--- 195
+P+L A+ LL+ ++V+F+++GS A + +K+ + +N +K
Sbjct: 424 EPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIV 483
Query: 196 -KFIARQKSYHGSTLIAASLSGLPALHQKF-------------DLPAPFVLHTD------ 235
K IA + SYHG TL A P+ + F D P F+ +
Sbjct: 484 VKVIALRGSYHGDTLGAMEAQA-PSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLP 542
Query: 236 ------CPHYWRYAHPGETEEE----------YSTRLANNLEDLILKEGPETIAAFIAEX 279
P Y + E ++ YS L+ +L++ + A I E
Sbjct: 543 ESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEP 602
Query: 280 XXXXXXXXXXXXTYFEKVQA-VVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF 338
F++V + I I DEV F RLG + KPD+ F
Sbjct: 603 VIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACF 662
Query: 339 AKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE- 397
AK L+ +P+ L + V + S L + HG +YS H + CA A +A++ +K+
Sbjct: 663 AKLLTGGMVPLAVTLATDAVFDSFSGDSK-LKALLHGHSYSAHAMGCATAAKAIQWFKDP 721
Query: 398 ---RNIVEQVNKIAPKF-QDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWG 453
NI Q + + ++ V+ S + + G + E + S N + +
Sbjct: 722 ETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADAS-NSGYASLYA 780
Query: 454 IGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKAL 500
+ G+ R G+ I + SPE L++K K L
Sbjct: 781 KSLLI--MLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLTKLYKRL 825
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 93/440 (21%), Positives = 172/440 (39%), Gaps = 54/440 (12%)
Query: 84 LVIEKSEGSYVYD-VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 142
L + +S GSY+ D + G++YLD + +ALG + P LV + + + +
Sbjct: 37 LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 143 TKPSLDLAKELLEMFTA----SKMAKVFFTNSGSEANDTQVKLVWYYNN----------A 188
S+ +A+ +E F + +FF G+ A + +K + + + A
Sbjct: 97 DVYSVAMAR-FVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 189 LGRPNKKKFIARQKSYHGSTLIAASLSG----LPALHQKFDLPAPFVLHTDCPHYWRYAH 244
LG + + + ++HG + SL+ + A KFD P D P Y
Sbjct: 156 LG----TQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWP-----RIDAP----YMR 202
Query: 245 PGETEEEYSTRLANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVK 302
PG E + A L + P IA F+AE +F ++ +
Sbjct: 203 PGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMRELCD 262
Query: 303 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVI 362
++D L I DEV G GT + + + PD+V+F K + G + EV++ +
Sbjct: 263 EFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRV--DEVADNV 320
Query: 363 HSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDS 421
+ + L S T+ G+ A L++ + + E+ + + + +D
Sbjct: 321 FAVPSRLNS-----TWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADF 375
Query: 422 P-IIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSP 480
P ++ + RG GL+ +E W ++ +++ D + P
Sbjct: 376 PAVVLDPRGRGLMCAFSLPTTADRDELIRQLW----------QRAVIVLPAGADTVRFRP 425
Query: 481 PFIMSPEEVDELISKYGKAL 500
P +S E+D I+ AL
Sbjct: 426 PLTVSTAEIDAAIAAVRSAL 445
>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form.
pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form
Length = 831
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 93/407 (22%), Positives = 157/407 (38%), Gaps = 55/407 (13%)
Query: 144 KPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWY-----YNNALGRPNKK--- 195
+P+L A+ LL+ ++V+F+++GS A + +K + +N +K
Sbjct: 424 EPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKXAFRKFCVDHNFCEATEEEKHIV 483
Query: 196 -KFIARQKSYHGSTLIAASLSGLPALHQKF-------------DLPAPFVLHTD------ 235
K IA + SYHG TL A + P+ + F D P F+ +
Sbjct: 484 VKVIALRGSYHGDTL-GAXEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLP 542
Query: 236 ------CPHYWRYAHPGETEEE----------YSTRLANNLEDLILKEGPETIAAFIAEX 279
P Y + E ++ YS L+ +L++ + A I E
Sbjct: 543 ESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEP 602
Query: 280 XXXXXXXXXXXXTYFEKVQA-VVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSF 338
F++V + I I DEV F RLG + KPD+ F
Sbjct: 603 VIHGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACF 662
Query: 339 AKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKE- 397
AK L+ +P+ L + V + S L + HG +YS H CA A +A++ +K+
Sbjct: 663 AKLLTGGXVPLAVTLATDAVFDSFSGDSK-LKALLHGHSYSAHAXGCATAAKAIQWFKDP 721
Query: 398 ---RNIVEQVNKIAPKF-QDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWG 453
NI Q + + ++ V+ S + + G + E + S N + +
Sbjct: 722 ETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADAS-NSGYASLYA 780
Query: 454 IGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKAL 500
+ + G+ R G+ I + SPE L++K K L
Sbjct: 781 KSLLIXLR--EDGIFTRPLGNVIYLXCGPCTSPEICRRLLTKLYKRL 825
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 93/440 (21%), Positives = 172/440 (39%), Gaps = 54/440 (12%)
Query: 84 LVIEKSEGSYVYD-VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 142
L + +S GSY+ D + G++YLD + +ALG + P LV + + + +
Sbjct: 37 LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 143 TKPSLDLAKELLEMFTA----SKMAKVFFTNSGSEANDTQVKLVWYYNN----------A 188
S+ +A+ +E F + +FF G+ A + +K + + + A
Sbjct: 97 DVYSVAMAR-FVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 189 LGRPNKKKFIARQKSYHGSTLIAASLSG----LPALHQKFDLPAPFVLHTDCPHYWRYAH 244
LG + + + ++HG + SL+ + A KFD P D P Y
Sbjct: 156 LG----TQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWP-----RIDAP----YMR 202
Query: 245 PGETEEEYSTRLANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVK 302
PG E + A L + P IA F+AE +F ++ +
Sbjct: 203 PGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCD 262
Query: 303 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVI 362
++D L I DEV G GT + + + PD+V+F K + G + EV++ +
Sbjct: 263 EFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRV--DEVADNV 320
Query: 363 HSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDS 421
+ + L S T+ G+ A L++ + + E+ + + + +D
Sbjct: 321 FAVPSRLAS-----TWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADF 375
Query: 422 P-IIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSP 480
P ++ + RG GL+ +E W ++ +++ D + P
Sbjct: 376 PAVVLDPRGRGLMCAFSLPTTADRDELIRQLW----------QRAVIVLPAGADTVRFRP 425
Query: 481 PFIMSPEEVDELISKYGKAL 500
P +S E+D I+ AL
Sbjct: 426 PLTVSTAEIDAAIAAVRSAL 445
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 93/440 (21%), Positives = 172/440 (39%), Gaps = 54/440 (12%)
Query: 84 LVIEKSEGSYVYD-VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 142
L + +S GSY+ D + G++YLD + +ALG + P LV + + + +
Sbjct: 37 LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 143 TKPSLDLAKELLEMFTA----SKMAKVFFTNSGSEANDTQVKLVWYYNN----------A 188
S+ +A+ +E F + +FF G+ A + +K + + + A
Sbjct: 97 DVYSVAMAR-FVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 189 LGRPNKKKFIARQKSYHGSTLIAASLSG----LPALHQKFDLPAPFVLHTDCPHYWRYAH 244
LG + + + ++HG + SL+ + A KFD P D P Y
Sbjct: 156 LG----TQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWP-----RIDAP----YMR 202
Query: 245 PGETEEEYSTRLANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVK 302
PG E + A L + P IA F+AE +F ++ +
Sbjct: 203 PGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCD 262
Query: 303 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVI 362
++D L I DEV G GT + + + PD+V+F K + G + EV++ +
Sbjct: 263 EFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRV--DEVADNV 320
Query: 363 HSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDS 421
+ + L S T+ G+ A L++ + + E+ + + + +D
Sbjct: 321 FAVPSRLNS-----TWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADF 375
Query: 422 P-IIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSP 480
P ++ + RG GL+ +E W ++ +++ D + P
Sbjct: 376 PAVVLDPRGRGLMCAFSLPTTADRDELIRQLW----------QRAVIVLPAGADTVRFRP 425
Query: 481 PFIMSPEEVDELISKYGKAL 500
P +S E+D I+ AL
Sbjct: 426 PLTVSTAEIDAAIAAVRSAL 445
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 92/440 (20%), Positives = 172/440 (39%), Gaps = 54/440 (12%)
Query: 84 LVIEKSEGSYVYD-VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 142
L + +S GSY+ D + G++YLD + +ALG + P LV + + + +
Sbjct: 37 LDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS 96
Query: 143 TKPSLDLAKELLEMFTA----SKMAKVFFTNSGSEANDTQVKLVWYYNN----------A 188
S+ +A+ +E F + +FF G+ A + +K + + + A
Sbjct: 97 DVYSVAMAR-FVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 189 LGRPNKKKFIARQKSYHGSTLIAASLSG----LPALHQKFDLPAPFVLHTDCPHYWRYAH 244
LG + + + ++HG + SL+ + A KFD P D P Y
Sbjct: 156 LG----TQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWP-----RIDAP----YMR 202
Query: 245 PGETEEEYSTRLANNLEDL--ILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVK 302
PG E + A L + P IA F+AE +F ++ +
Sbjct: 203 PGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCD 262
Query: 303 KYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVI 362
++D L I DEV G GT + + + PD+V+F K + G + EV++ +
Sbjct: 263 EFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRV--DEVADNV 320
Query: 363 HSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDS 421
+ + L S ++ G+ A L++ + + E+ + + + +D
Sbjct: 321 FAVPSRLNS-----SWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADF 375
Query: 422 P-IIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSP 480
P ++ + RG GL+ +E W ++ +++ D + P
Sbjct: 376 PAVVLDPRGRGLMCAFSLPTTADRDELIRQLW----------QRAVIVLPAGADTVRFRP 425
Query: 481 PFIMSPEEVDELISKYGKAL 500
P +S E+D I+ AL
Sbjct: 426 PLTVSTAEIDAAIAAVRSAL 445
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 122/299 (40%), Gaps = 54/299 (18%)
Query: 87 EKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTT--- 143
E+S G+Y+ DV+G + LD + + +G S P LV N +F NR
Sbjct: 50 EESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNV----STFINRPALGI 105
Query: 144 KPSLDLAKELLEMFTA---SKMAKVFFTNSGSEANDTQVKLV--WY-------------- 184
P + ++L E + M+++ GS +N+ K + WY
Sbjct: 106 LPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEE 165
Query: 185 -----YNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQ----KFDLP-APFVLHT 234
N A G P+ ++ ++HG T+ + + A+H+ FD P APF
Sbjct: 166 LETCMINQAPGCPD-YSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFP--- 221
Query: 235 DCPHYWRYAHPGE----TEEEYSTRLANNLEDLILK--EGPETIAAFIAEXXXXXXXXXX 288
R +P E ++ R +EDLI+K + +T+A I E
Sbjct: 222 ------RLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNH 275
Query: 289 XXXTYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIK--PDLVSFAKALSSA 345
+F K++ + +K+ F+ DEV G G + + + + D+++F+K + +
Sbjct: 276 ASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTG 334
>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AO9|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
Length = 454
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 120/312 (38%), Gaps = 48/312 (15%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 142
PL I + EG+ ++D +G +Y D +A G S P + A + N T
Sbjct: 70 PLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAM------QGGINLT 123
Query: 143 TKPSLD--LAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIAR 200
L+ LA+ + E F ++ ++ FTNSG+EAN + ++ ++K +
Sbjct: 124 GHNLLEGRLARLICERF--PQIEQLRFTNSGTEANLMALTAALHFT------GRRKIVVF 175
Query: 201 QKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 260
YHG L G A +P F++ P+ + T A
Sbjct: 176 SGGYHGGVL------GFGARPSPTTVPFDFLV---LPY-----------NDAQTARAQ-- 213
Query: 261 EDLILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRL 320
I + GPE IA + E + + ++ + L + DEV+ + RL
Sbjct: 214 ---IERHGPE-IAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RL 267
Query: 321 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSG 380
+K I+ DL + K + M GA +V + ++ G +H T++
Sbjct: 268 APHGLANKLGIRSDLTTLGKYIGGG-MSFGAFGGRADVMALFDPRT---GPLAHSGTFNN 323
Query: 381 HPVSCAVAIEAL 392
+ ++ A L
Sbjct: 324 NVMTMAAGYAGL 335
>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
Length = 465
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 73/330 (22%), Positives = 124/330 (37%), Gaps = 43/330 (13%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 142
PLVI + GS DV+G Y++ L G S P + AA L + +T
Sbjct: 83 PLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVE---RALAVGLNLSTQT 139
Query: 143 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 202
+L A+ + + F + + + FTNSG+EAN + A +K +A
Sbjct: 140 ENEAL-FAEAVCDRFPSIDLVR--FTNSGTEAN------LMALATATAITGRKTVLAFDG 190
Query: 203 SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLED 262
YHG L AS AP T+ P++ + E D
Sbjct: 191 GYHGGLLNFASGH------------AP----TNAPYHVVLGVYNDVE---------GTAD 225
Query: 263 LILKEGPETIAAFIAEXXXXXXXXXXXXXTYFEKVQAVVKKYDILFIADEVICAFGRLGT 322
L+ + G + AA + E + + ++A + L I DEV+ + RL
Sbjct: 226 LLKRHGHD-CAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTS--RLSG 282
Query: 323 MFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHP 382
+ I DL + K + M GA ++ E + G+F+H T++ +
Sbjct: 283 GGAQEMLGISADLTTLGKYIGGG-MSFGAFGGRRDLMERFDPARD--GAFAHAGTFNNNI 339
Query: 383 VSCAVAIEALKIYKERNIVEQVNKIAPKFQ 412
++ + AL R ++ +F+
Sbjct: 340 LTMSAGHAALTQIYTRQAASDLSASGDRFR 369
>pdb|3STH|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
Length = 361
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 157 FTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNK 194
F K + VF N+G NDT VKLV +Y+N G N+
Sbjct: 310 FVHCKFSSVFDINAGIMLNDTFVKLVSWYDNEWGYSNR 347
>pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
Length = 334
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 157 FTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 190
F S + +F +G E NDT VKLV +Y+N G
Sbjct: 285 FNGSNHSSIFDAGAGIELNDTFVKLVSWYDNEFG 318
>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
Length = 336
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 157 FTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNK 194
F + +F +G ND VKLV +Y+N G N+
Sbjct: 287 FVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNR 324
>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3V1Y|O Chain O, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|A Chain A, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|B Chain B, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|C Chain C, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
Length = 337
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 157 FTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNK 194
F + +F +G ND VKLV +Y+N G N+
Sbjct: 288 FVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNR 325
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,702,376
Number of Sequences: 62578
Number of extensions: 614262
Number of successful extensions: 1794
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1481
Number of HSP's gapped (non-prelim): 101
length of query: 514
length of database: 14,973,337
effective HSP length: 103
effective length of query: 411
effective length of database: 8,527,803
effective search space: 3504927033
effective search space used: 3504927033
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)