RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 010250
(514 letters)
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 681 bits (1760), Expect = 0.0
Identities = 177/465 (38%), Positives = 272/465 (58%), Gaps = 5/465 (1%)
Query: 48 GTDASSQKEDSTTNGFKGHD---MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLD 104
G + + ++ L FT +V+ EG Y+ DVNG++YLD
Sbjct: 6 GGQQMGRGSMNKPQSWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLD 65
Query: 105 SLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAK 164
+ +GLW G L+ AA AQ P YH+F+ R + ++ L+++L+E+ + +
Sbjct: 66 ANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEV-SPFDSGR 124
Query: 165 VFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF 224
VF+TNSGSEANDT VK++W+ + A G+P K+K + R +YHG T ++AS++G P + F
Sbjct: 125 VFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPY-NSVF 183
Query: 225 DLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAG 284
LP P +H CPHYWRY GETEE++ RLA LE+ I +EG +TIA F AEPV+GAG
Sbjct: 184 GLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAG 243
Query: 285 GVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSS 344
GVIPP YF+ + +++KYDI I+DEVIC FGR G +GC Y PD + +K L++
Sbjct: 244 GVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTA 303
Query: 345 AYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQV 404
+ P+GA+++ PE+S+ + + + F HGFT SGHPV CA+A++A+ + + E V
Sbjct: 304 GFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENV 363
Query: 405 NKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEK 464
++AP+F++ +K ++ P IGE RG G + E +K+ PF + C
Sbjct: 364 RRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTD 423
Query: 465 HGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATEERVKE 509
G++ R G ++++ PPFI++ ++DE+ K KAL V
Sbjct: 424 LGLICRPLGQSVVLCPPFILTEAQMDEMFDKLEKALDKVFAEVAA 468
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 657 bits (1698), Expect = 0.0
Identities = 179/445 (40%), Positives = 265/445 (59%), Gaps = 6/445 (1%)
Query: 68 MLAPFT--AGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAA 125
P T + ++ EG V+D NG+K +D+ AGL+C +G ++ A
Sbjct: 17 FFHPSTHMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAI 76
Query: 126 TAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYY 185
Q L +YH++ T+ S+ LAK +++ M++V+F SGS+AN+T +KL+WYY
Sbjct: 77 ATQAKNLAYYHAYVGHGTEASITLAKMIIDR-APKGMSRVYFGLSGSDANETNIKLIWYY 135
Query: 186 NNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHP 245
NN LGRP KKK I+R + YHGS ++ SL+GL H FDLP VLHT+ P+Y+R
Sbjct: 136 NNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDR 195
Query: 246 GETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD 305
+EE++S A+ LE++IL EGPETIAAFI EP++G GG++PPPA Y+EK+QAV+KKYD
Sbjct: 196 SMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYD 255
Query: 306 ILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQ 365
+L +ADEV+ FGRLGTMFG D Y IKPDL++ AK L+SAY P+ ++V+ V +V+
Sbjct: 256 VLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQG 315
Query: 366 SNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDG-VKAFSDSPII 424
S+ LGS HG+TYS HP+ A + L++ E ++V + F+ KA +
Sbjct: 316 SDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNV 375
Query: 425 GEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV--SGDNIMMSPPF 482
GE+RG G++ EF +K F IG G++ R GD + +PP
Sbjct: 376 GEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQGDILGFAPPL 435
Query: 483 IMSPEEVDELISKYGKALKATEERV 507
++ E+ D ++SK A+K+ +
Sbjct: 436 CLTREQADIVVSKTADAVKSVFANL 460
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 657 bits (1698), Expect = 0.0
Identities = 171/459 (37%), Positives = 265/459 (57%), Gaps = 11/459 (2%)
Query: 56 EDSTTNGFKGHD---MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCT 112
+ TT+ ++ D L PFT V+ + EG Y++D G K +D +AGLWC
Sbjct: 3 KQRTTSQWRELDAAHHLHPFTDTASLNQAGARVMTRGEGVYLWDSEGNKIIDGMAGLWCV 62
Query: 113 ALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGS 172
+G AA Q+ LPFY++F+ T ++L+ L E+ T + +VF+TNSGS
Sbjct: 63 NVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEV-TPAGFDRVFYTNSGS 121
Query: 173 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVL 232
E+ DT +++V Y + G+P KK I R YHGST+ ASL G+ +H++ DLP P +
Sbjct: 122 ESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMA 181
Query: 233 HTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPAT 292
H + P ++++ T +E+ A LE+ IL+ G + +AAF+ EP+ GAGGVI PPAT
Sbjct: 182 HIEQPWWYKHG-KDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPAT 240
Query: 293 YFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAI 352
Y+ +++ + +KYD+L +ADEVIC FGR G FG + +PDL + AK LSS Y+PIGA+
Sbjct: 241 YWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAV 300
Query: 353 LVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQV-NKIAPKF 411
V V+E + + G F+HGFTYSGHPV AVA + ++ IV++V + I P
Sbjct: 301 FVGKRVAEGLIAG----GDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYM 356
Query: 412 QDGVK-AFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR 470
Q + FS + ++RG G++ NK+ E FP IG ++ +++R
Sbjct: 357 QKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMR 416
Query: 471 VSGDNIMMSPPFIMSPEEVDELISKYGKALKATEERVKE 509
GD+I+ +PP +M+ EVDE+++ + L+ E+ +K
Sbjct: 417 ACGDHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQTLKA 455
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 655 bits (1691), Expect = 0.0
Identities = 137/442 (30%), Positives = 235/442 (53%), Gaps = 5/442 (1%)
Query: 68 MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 127
+L P + V+ +EG YV+ +G++ +D AG+WC +G +V A
Sbjct: 22 ILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAH 81
Query: 128 QLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNN 187
Q LP+ + T P+ LA+++ + T + ++FFT GS A D+ ++ +YNN
Sbjct: 82 QAMVLPYASPW-YMATSPAARLAEKIATL-TPGDLNRIFFTTGGSTAVDSALRFSEFYNN 139
Query: 188 ALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGE 247
LGRP KK+ I R YHGST + A+ +G FD+ + P+
Sbjct: 140 VLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRH--AGNR 197
Query: 248 TEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDIL 307
++E + L ED I GP+TIAAF+AEP++ +GGVI PPA Y + +A+ +K+DIL
Sbjct: 198 SQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDIL 257
Query: 308 FIADEVICAFGRLGTMFGCDK-YSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQS 366
+I+DEV+ FGR G F +K + + PD+++FAK ++S Y+P+G + +S V I ++
Sbjct: 258 YISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGEN 317
Query: 367 NTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGE 426
F++G+TYS PV+CA A+ +++ + IV+Q ++A F + + D P + E
Sbjct: 318 AKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLRDLPGVAE 377
Query: 427 IRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSP 486
R GL+ + + + + + +C + G++VR GD ++SPP I+S
Sbjct: 378 TRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPLGDLCVISPPLIISR 437
Query: 487 EEVDELISKYGKALKATEERVK 508
++DE+++ +A+
Sbjct: 438 AQIDEMVAIMRQAITEVSAAHG 459
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 649 bits (1677), Expect = 0.0
Identities = 170/463 (36%), Positives = 266/463 (57%), Gaps = 13/463 (2%)
Query: 52 SSQKEDSTTNGFKGHD---MLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAG 108
++ T + D L PF+A + VI ++ G ++ D G++ LD++AG
Sbjct: 4 ATITNHMPTAELQALDAAHHLHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAMAG 63
Query: 109 LWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFT 168
LWC +G L A Q+ LP+Y++F+ T P++ LA++L E+ + VFF
Sbjct: 64 LWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAEL-APGDLNHVFFA 122
Query: 169 NSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPA 228
GSEANDT +++V Y G+P K I+R+ +YHGST+ +++L G+ +H + L
Sbjct: 123 GGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLI- 181
Query: 229 PFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIP 288
P V H + P++W + EE+ A LE+ IL+ G +AAFIAEPV GAGGVI
Sbjct: 182 PDVHHINQPNWWAEGGDMD-PEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIV 240
Query: 289 PPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMP 348
P +Y+ ++Q + KYDIL IADEVIC FGR G FG I+P +++ AK LSS Y P
Sbjct: 241 APDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAP 300
Query: 349 IGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKI- 407
IG +V EV+ VI F+HG+TYSGHPV+ AVA+E L+I +E NI++ V +
Sbjct: 301 IGGSIVCDEVAHVIGK-----DEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVA 355
Query: 408 APKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWG-IGAYFGAQCEKHG 466
AP ++ +A +D P++GE + G++ NK+ F E G IG +C +
Sbjct: 356 APYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANN 415
Query: 467 MLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATEERVKE 509
+++R GD +++SPP +++P E+DE+ + K+L + +++
Sbjct: 416 LIMRHVGDRMIISPPLVITPAEIDEMFVRIRKSLDEAQAEIEK 458
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 633 bits (1636), Expect = 0.0
Identities = 139/437 (31%), Positives = 215/437 (49%), Gaps = 11/437 (2%)
Query: 71 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 130
P+TA P +I +EGS++ D G+K DSL+GLW G + + A QL+
Sbjct: 22 PYTANRNFLR-DPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLS 80
Query: 131 TLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 190
TL + F S LA+++ ++ T + VFFT+SGSE T VK+V Y G
Sbjct: 81 TLDYSPGF-QYGHPLSFQLAEKITDL-TPGNLNHVFFTDSGSECALTAVKMVRAYWRLKG 138
Query: 191 RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 250
+ K K I R + YHG + SL G+ + F P V H A+ +
Sbjct: 139 QATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPK 198
Query: 251 EYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA 310
E LA+ L LI IAA EP+ G+ GV+ PP Y ++ + + +++IL +
Sbjct: 199 EGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVF 258
Query: 311 DEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNT-- 368
DEVI FGR G+MFG D + + PDL+ AK +++ +P+GA++ S E+ + +Q
Sbjct: 259 DEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEY 318
Query: 369 LGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR 428
F HG+TYS HPV+CA + AL + ++ N+V+ V ++AP F+ + + + +IR
Sbjct: 319 AVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIR 378
Query: 429 GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEE 488
GL + A P E G+ + K G VR GD + P F P++
Sbjct: 379 NFGLAGAIQIAPRDGDAIVRPFEAGMALW------KAGFYVRFGGDTLQFGPTFNSKPQD 432
Query: 489 VDELISKYGKALKATEE 505
+D L G+ L +
Sbjct: 433 LDRLFDAVGEVLNKLLD 449
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 613 bits (1583), Expect = 0.0
Identities = 137/432 (31%), Positives = 232/432 (53%), Gaps = 16/432 (3%)
Query: 79 TDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSF 138
+ V K+EG +V D+ GK+YLD ++GLWC G L AA QL TL ++
Sbjct: 28 SPNSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFP-- 85
Query: 139 WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 198
+++ +P++ LA++L E +FF+NSGSEAN+T K+ Y G P++ KF+
Sbjct: 86 MSQSHEPAIKLAEKLNEW--LGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFM 143
Query: 199 ARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 258
+R + YHG+T+ + +G +++ A LH P +R E E Y
Sbjct: 144 SRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPG-IERENIYDVECVK 202
Query: 259 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 318
++ ++ E ETIAAFI EP+I GG++ P Y + V +K+ L I+DEVIC FG
Sbjct: 203 EVDRVMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFG 262
Query: 319 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 378
R G FG Y +KPD+++ AK ++SAY+P+ A V E+ E + F H T+
Sbjct: 263 RTGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKG-EYEFFRHINTF 321
Query: 379 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTGLILGTE 437
G+P +CA+A++ L+I + N++E+ ++ + +K + P++G+IRG GL++G E
Sbjct: 322 GGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIE 381
Query: 438 FADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG-------DNIMMSPPFIMSPEEVD 490
++K EP + C++ G+++ +G + + ++PP ++S EE+
Sbjct: 382 LVNDKETKEPIDNDKIASVV--NACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIA 439
Query: 491 ELISKYGKALKA 502
+I A++
Sbjct: 440 FVIGTLKTAMER 451
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 579 bits (1496), Expect = 0.0
Identities = 129/432 (29%), Positives = 209/432 (48%), Gaps = 26/432 (6%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 142
V + EG ++YD G++YLD +G +G + AQ LPF H +
Sbjct: 12 YPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGS-QFS 70
Query: 143 TKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQK 202
+ + A L + + + GSEA ++ VKL Y+ G P + K I R
Sbjct: 71 SDVLEEYAGRLARF-VGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVP 129
Query: 203 SYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLED 262
SYHG++L + + SG+ A + + P + P P A L
Sbjct: 130 SYHGASLGSLAASGMGARRELYT---PLMRPEAWPKL-----PKPDPARNGAEDAEGLRA 181
Query: 263 LILKEGPETIAAFIAEPVIGA-GGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG 321
L+ +EGPET+AAF+AEPV+GA + P Y+E+V+ + + I+FIADEV+ GR G
Sbjct: 182 LLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCG 241
Query: 322 TMFGCDKYS-IKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSG 380
+ ++S + PD+ K L++ Y P+ +L +P+V E + S G+F HGFTY+G
Sbjct: 242 SPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGS---GAFMHGFTYAG 298
Query: 381 HPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTGLILGTEFA 439
HPVS A + L I + ++ + + G++A + P + ++RGTGL+LG
Sbjct: 299 HPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLG 358
Query: 440 DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVR--------VSGDNIMMSPPFIMSPEEVDE 491
D + + F GI + GA K G++ GD++++ PP ++ EVD
Sbjct: 359 D-LATGQAFETP-GIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDG 416
Query: 492 LISKYGKALKAT 503
L++ AL+
Sbjct: 417 LLALLAGALEDV 428
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 485 bits (1250), Expect = e-169
Identities = 135/434 (31%), Positives = 223/434 (51%), Gaps = 7/434 (1%)
Query: 71 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 130
PFT + D +PL+IE G V D+NGK+Y D + +W G + L A QL
Sbjct: 16 PFTQ-MKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLG 74
Query: 131 TLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 190
+ + + T P+ LA+ L+++ + K+ +VF+++SG+EA + +K+ + Y +G
Sbjct: 75 KIA-HSTLLGMTNVPATQLAETLIDI-SPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIG 132
Query: 191 RPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEE 250
+P K+KFIA + YHG T+ A S+ + H + P+ +R +
Sbjct: 133 KPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYR--SESGDPD 190
Query: 251 EYSTRLANNLEDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKYDILFI 309
E + L L L+E E IAA E ++ GA G+I P Y V+ + YD+L I
Sbjct: 191 ECRDQCLRELAQL-LEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMI 249
Query: 310 ADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTL 369
DEV FGR G MF C+ +++PDL++ K ++ Y+PI + ++ + + L
Sbjct: 250 VDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENL 309
Query: 370 GSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRG 429
+F HG +Y+G+ + CAVA+E L +++ NIVEQV + + K ++ P +G+IR
Sbjct: 310 KTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQ 369
Query: 430 TGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEV 489
G + G E +K EP+P + IG + + GML R GD I PP + EE+
Sbjct: 370 LGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFLPPLASTAEEL 429
Query: 490 DELISKYGKALKAT 503
E+++ +A+
Sbjct: 430 SEMVAIMKQAIHEV 443
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 370 bits (952), Expect = e-124
Identities = 108/427 (25%), Positives = 196/427 (45%), Gaps = 26/427 (6%)
Query: 82 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 141
P++IE+++GS+VYD +G+ LD +G LG P +V+ L H F
Sbjct: 25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLD--HLFSEM 82
Query: 142 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 201
++P +DLA L + T + + ++G+E+N+ +++ G+ + +
Sbjct: 83 LSRPVVDLATRLANI-TPPGLDRALLLSTGAESNEAAIRMAKLVT---GKY---EIVGFA 135
Query: 202 KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLE 261
+S+HG T AAS + + A P +R +Y +
Sbjct: 136 QSWHGMTGAAASATYSAG-RKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYL-AELDYAF 193
Query: 262 DLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG 321
DLI ++ +AAFIAEP++ +GG+I P Y ++ + +L I DE GR G
Sbjct: 194 DLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG 253
Query: 322 TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGH 381
TMF C + + PD+++ +K L + +P+ AI+ S + E H + T+
Sbjct: 254 TMFACQRDGVTPDILTLSKTLGA-GLPLAAIVTSAAIEERAHE-----LGYLFYTTHVSD 307
Query: 382 PVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFAD 440
P+ AV + L + + +V + N + + + G+ + IG++RG GL+LG E
Sbjct: 308 PLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVK 367
Query: 441 NKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS-----GDNIMMSPPFIMSPEEVDELISK 495
++ EP GA +C G+ + + G ++PP +S +E+D +S
Sbjct: 368 DRRTKEPADGL---GAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSL 424
Query: 496 YGKALKA 502
G+A++
Sbjct: 425 LGQAIER 431
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 351 bits (903), Expect = e-112
Identities = 96/487 (19%), Positives = 160/487 (32%), Gaps = 61/487 (12%)
Query: 71 PFTA--GWQSTDVHPLVIEKSEGSYVYDVNG----KKYLDSLAGLWCTALG-GSEPRLVA 123
PFT V + E +Y + + D+ A W + L
Sbjct: 345 PFTQHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAR 404
Query: 124 AATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVW 183
+ F +P+L A+ LL+ ++V+F+++GS A + +K+ +
Sbjct: 405 EMGYTAARFG-HVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAF 463
Query: 184 YY---------NNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFD--------- 225
+ K IA + SYHG TL A
Sbjct: 464 RKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGL 523
Query: 226 ---------------LPAPFVLHTDCPHYWRYAHPGET----------EEEYSTRLANNL 260
+ P P Y + E YS L+ +L
Sbjct: 524 FLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHL 583
Query: 261 EDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 319
++ + A I EPVI GAGG+ + + + I I DEV F R
Sbjct: 584 QEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWR 643
Query: 320 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 379
LG + KPD+ FAK L+ +P+ L + V + S + HG +YS
Sbjct: 644 LGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKL-KALLHGHSYS 702
Query: 380 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKF-----QDGVKAFSDSPIIGEIRGTGLIL 434
H + CA A +A++ +K+ + ++ V+ S + + G +
Sbjct: 703 AHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLF 762
Query: 435 GTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELIS 494
E + S + + G+ R G+ I + SPE L++
Sbjct: 763 ALELKADASNS---GYASLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLT 819
Query: 495 KYGKALK 501
K K L
Sbjct: 820 KLYKRLG 826
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 336 bits (865), Expect = e-111
Identities = 102/438 (23%), Positives = 195/438 (44%), Gaps = 35/438 (7%)
Query: 71 PFTAGWQSTDVHPLVIEKSEGSYVY---DVNGKKYLDSLAGLWCTALGGSEPRLVAAATA 127
P+++ V P+V + G+++ D + LD+++ W G P L A T
Sbjct: 44 PYSS-IGREAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTT 102
Query: 128 QLNTLPFYHS-FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYN 186
QL + H F T +P+ LAK L+++ T + + VFF++SGS + + K+ Y
Sbjct: 103 QLRVMN--HVMFGGLTHEPAARLAKLLVDI-TPAGLDTVFFSDSGSVSVEVAAKMALQYW 159
Query: 187 NALGRPNKKKFIARQKSYHGSTLIAASLSGLPAL-HQKFDLPAPFVLHTDCPHYWRYAHP 245
G P K++ + + YHG T +A S+ H + + P
Sbjct: 160 RGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQV-------P 212
Query: 246 GETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKY 304
+ + Y + E L + +AA + EPV+ GAGG+ Y ++ + ++Y
Sbjct: 213 RDYDPAY----SAAFEAQ-LAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRY 267
Query: 305 DILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHS 364
++L I DE+ FGR G +F D + PD++ KAL+ Y+ + A L + +V+ I +
Sbjct: 268 EVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISA 327
Query: 365 QSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPII 424
+ G+ HG T+ +P++CAV++ ++++ ++ ++ ++A G+ P +
Sbjct: 328 GAA--GALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAV 385
Query: 425 GEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIM 484
++R G I E P G+ +R + + PP+I
Sbjct: 386 TDVRVCGAIGVIECDRPVDLAVATP-----------AALDRGVWLRPFRNLVYAMPPYIC 434
Query: 485 SPEEVDELISKYGKALKA 502
+P E+ ++ S + +
Sbjct: 435 TPAEITQITSAMVEVARL 452
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold
type I, subclass II, homodimer; HET: LLP; 1.71A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A*
1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A*
1dty_A*
Length = 429
Score = 334 bits (858), Expect = e-110
Identities = 111/435 (25%), Positives = 202/435 (46%), Gaps = 30/435 (6%)
Query: 71 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 130
PFT+ ++ + + +EG + +G++ +D ++ W G + P+L AA +Q++
Sbjct: 16 PFTS--MTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQID 73
Query: 131 TLPFYHS-FWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNAL 189
+ H F T P+++L ++L+ M T + VF +SGS A + +K+ Y A
Sbjct: 74 AMS--HVMFGGITHAPAIELCRKLVAM-TPQPLECVFLADSGSVAVEVAMKMALQYWQAK 130
Query: 190 GRPNKKKFIARQKSYHGSTLIAASLSGLPAL-HQKFDLPAPFVLHTDCPHYWRYAHPGET 248
G +++F+ + YHG T A S+ H + P L P
Sbjct: 131 GEA-RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRM------- 182
Query: 249 EEEYSTRLANNLEDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKYDIL 307
+ E+ R L + IAA I EP++ GAGG+ + ++++ + + IL
Sbjct: 183 DGEWDERDMVGFARL-MAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGIL 241
Query: 308 FIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSN 367
IADE+ FGR G +F C+ I PD++ KAL+ M + A L + EV+E I +
Sbjct: 242 LIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETIS--NG 299
Query: 368 TLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEI 427
G F HG T+ G+P++CA A +L I + + +QV I + ++ + D+ ++ ++
Sbjct: 300 EAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADV 359
Query: 428 RGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 487
R G I E + + G+ +R G I + PP+I+ P+
Sbjct: 360 RVLGAIGVVETTHPVNMAALQ-----------KFFVEQGVWIRPFGKLIYLMPPYIILPQ 408
Query: 488 EVDELISKYGKALKA 502
++ L + +A++
Sbjct: 409 QLQRLTAAVNRAVQD 423
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 331 bits (850), Expect = e-109
Identities = 102/427 (23%), Positives = 189/427 (44%), Gaps = 25/427 (5%)
Query: 82 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 141
P+ ++ G V DV+G + +D +G+ T +G S P++V A +Q+ F
Sbjct: 43 MPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHT-CFMVT 101
Query: 142 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 201
+ + + ++L + + NSGSEA + VK+ + +P +A
Sbjct: 102 PYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHT---HKPA---VVAFD 155
Query: 202 KSYHGSTLIAASLSGLPALHQK-FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 260
+YHG T + +L+ ++ F AP + + +R A G+ A
Sbjct: 156 HAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRA 215
Query: 261 EDLILKE-GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 319
+I K+ G + +AA + EP+ G GG I P + + +K D++FIADEV F R
Sbjct: 216 ITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFAR 275
Query: 320 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 379
G MF C+ I PDL+ AK ++ +P+ A+ E+ + H G TY
Sbjct: 276 TGAMFACEHEGIDPDLIVTAKGIAGG-LPLSAVTGRAEIMDSPHVS-------GLGGTYG 327
Query: 380 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGTEF 438
G+P++CA A+ ++ + +V + +I +D + ++ IG++RG G ++ E
Sbjct: 328 GNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMEL 387
Query: 439 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIM-MSPPFIMSPEEVDELISK 495
+ P+ + A G++V G N++ PP + + ++E +
Sbjct: 388 VKAGTT----EPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDV 443
Query: 496 YGKALKA 502
+ L+
Sbjct: 444 LEEVLRG 450
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 329 bits (845), Expect = e-108
Identities = 108/430 (25%), Positives = 200/430 (46%), Gaps = 32/430 (7%)
Query: 82 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 141
HP+ +++E V+DV G++YLD G+ G P++VAA AQL L F
Sbjct: 23 HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHT-CFQVL 81
Query: 142 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 201
+P L+L + + + K +GSEA + VK+ R IA
Sbjct: 82 AYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT---KRSG---TIAFS 135
Query: 202 KSYHGSTLIAASLSGLPALHQK-FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 260
+YHG T +L+G + L V P G +E++ ++
Sbjct: 136 GAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLH----GISEDDA----IASI 187
Query: 261 EDLILKE-GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 319
+ + PE IAA + EPV G GG + ++++A+ ++ I+ IADEV GR
Sbjct: 188 HRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGR 247
Query: 320 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 379
GT+F ++ + PDL +FAK+++ P+ + EV + + G TY+
Sbjct: 248 TGTLFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPG-------GLGGTYA 299
Query: 380 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEF 438
G+P++C A+E LK++++ N++++ N + K +DG+ A ++ P IG++RG G ++ E
Sbjct: 300 GNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIEL 359
Query: 439 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIM-MSPPFIMSPEEVDELISK 495
++ N+P + A A+ G+++ G N++ + P + ++ + +
Sbjct: 360 FEDGDHNKPDA---KLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEI 416
Query: 496 YGKALKATEE 505
+ ++
Sbjct: 417 ISQCFDEAKQ 426
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 326 bits (839), Expect = e-108
Identities = 121/433 (27%), Positives = 204/433 (47%), Gaps = 45/433 (10%)
Query: 81 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGG-SEPRLVAAATAQLNTLPFYH-SF 138
+ PLVI+ EG ++YDV+G KYLD +G+ LG S P ++ Q+ H +
Sbjct: 23 LFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQK--LAHAAA 80
Query: 139 WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 198
+ P L+LAK+L+ + KVFF+NSG+EA + +K+V GR I
Sbjct: 81 NDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNT----GRKY---II 133
Query: 199 ARQKSYHGSTLIAASLSGLPALHQK-FDLPAPFVLHT---DCPHYWRYAHPGETEEEYST 254
A +HG T + SL+ A+ + P V+H + + + E E
Sbjct: 134 AFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVN 193
Query: 255 RLANNLEDLILKE--GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADE 312
R+ +ED I PE +A EP+ G GG + PP +F ++Q + KKY IL + DE
Sbjct: 194 RVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDE 253
Query: 313 VICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSF 372
V GR G +F + ++ PD+++ AKAL MPIGA + ++
Sbjct: 254 VQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD---------FKPG 304
Query: 373 SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGL 432
H T+ G+ ++CA+ + + I K+ ++ VN+I F + ++ + ++RG GL
Sbjct: 305 MHSNTFGGNALACAIGSKVIDIVKD--LLPHVNEIGKIFAEELQG-----LADDVRGIGL 357
Query: 433 ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDE 491
G E+ + K + + K G+L+ +G + + + PP ++S EE +
Sbjct: 358 AWGLEYNEKKVRDR-----------IIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQ 406
Query: 492 LISKYGKALKATE 504
+ K +K +
Sbjct: 407 GLDILKKVIKVVK 419
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 326 bits (839), Expect = e-107
Identities = 98/446 (21%), Positives = 178/446 (39%), Gaps = 29/446 (6%)
Query: 72 FTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNT 131
Q PL I G+ + + NG++ +D +LG P +VAA +A
Sbjct: 15 AIGNLQKLRFFPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAAN 74
Query: 132 LPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR 191
+ + P++ LA+ LL F K++F +SGS+AN+ + + GR
Sbjct: 75 PAGAT-ILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKAT---GR 130
Query: 192 PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEE 251
IA +YHG T+ + + SG Q A ++ P +R +
Sbjct: 131 SG---VIAFAGAYHGCTVGSMAFSGHSV--QADAAKADGLILLPYPDPYR----PYRNDP 181
Query: 252 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIAD 311
+ L + + +I A EP+ GG+I PP + K + + + IL + D
Sbjct: 182 TGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCD 241
Query: 312 EVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGS 371
EV R G + + PD++ K L +P+ A++ E+ + +
Sbjct: 242 EVKVGLARSGRLHCFEHEGFVPDILVLGKGLGGG-LPLSAVIAPAEILDCASA------- 293
Query: 372 FSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGT 430
T G+P+S A + L+ ++ + +DG+ + P+IG+IRG
Sbjct: 294 -FAMQTLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGR 352
Query: 431 GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIM-MSPPFIMSPE 487
GL G E ++ EP E A + + G++V G N++ +PP ++
Sbjct: 353 GLACGMELVCDRQSREPARAE---TAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITET 409
Query: 488 EVDELISKYGKALKATEERVKELKSQ 513
++ + + +A E +Q
Sbjct: 410 DIHKALDLLDRAFSELSAVSNEEIAQ 435
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 322 bits (827), Expect = e-105
Identities = 112/430 (26%), Positives = 193/430 (44%), Gaps = 28/430 (6%)
Query: 82 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 141
P+ ++G + D +G ++D AG+ T +G S P + AA Q F
Sbjct: 46 APVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHT-CFMVT 104
Query: 142 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 201
+ + +A+ L + + NSG+EA + +K+ GRP +A
Sbjct: 105 PYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLAT---GRPA---VVAFD 158
Query: 202 KSYHGSTLIAASLSGLPALHQK-FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 260
+YHG T + +L+ ++ F AP V + R PG T EE + R + +
Sbjct: 159 NAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDE-PGLTGEEAARRAISRI 217
Query: 261 EDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRL 320
E I G +++AA I EP+ G GG I P + + A + ++FIADEV F R
Sbjct: 218 ETQI---GAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFART 274
Query: 321 GTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSG 380
G F + I PD+V+ AK ++ MP+ A+ E+ + +++ G TY G
Sbjct: 275 GAWFASEHEGIVPDIVTMAKGIAGG-MPLSAVTGRAELMDAVYAG-------GLGGTYGG 326
Query: 381 HPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEFA 439
+PV+CA A+ AL + +E ++ + I + A ++ IIGE+RG G +L E
Sbjct: 327 NPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIV 386
Query: 440 DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--DNIM-MSPPFIMSPEEVDELISKY 496
+ P+ + A+ G+L+ G N++ + PP ++ + +DE I+
Sbjct: 387 KPGTL----EPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITAL 442
Query: 497 GKALKATEER 506
++A
Sbjct: 443 SDIIRAKASH 452
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 308 bits (791), Expect = e-100
Identities = 121/432 (28%), Positives = 195/432 (45%), Gaps = 53/432 (12%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 139
P+V+++++G +VYDVN K+Y D L+ G P ++ A Q L F+
Sbjct: 48 PVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNL--TICSRAFF 105
Query: 140 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNALGRPNKKKF 197
+ P + L + KV N+G+EAN+T KL W Y N K
Sbjct: 106 S---VPLGICERYLTNLL---GYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKI 159
Query: 198 IARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 257
+ + ++ G TL S S F PF P ++ Y
Sbjct: 160 VVCKNNFSGRTLGCISASTTKKCTSNFG---PFA-------------PQFSKVPY----- 198
Query: 258 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 317
++LE L + + AFI EP+ G GVI P Y + V + KKY++LF+ADEV
Sbjct: 199 DDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGL 258
Query: 318 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT 377
GR G + Y++KPD++ KALS + PI A+L + ++ VI G HG T
Sbjct: 259 GRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKP-----G--EHGST 311
Query: 378 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF-SDSPIIGEIRGTGLILGT 436
Y G+P++ ++ +EAL + + E K+ F + +K DS I+ ++RG GL+
Sbjct: 312 YGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAI 371
Query: 437 EFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISK 495
EF I + +++G++ R D + ++PP ++ E++DE
Sbjct: 372 EF------KNELVNVLDI----CLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEI 421
Query: 496 YGKALKATEERV 507
K +K +ER
Sbjct: 422 IVKTVKFFDERF 433
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 303 bits (779), Expect = 1e-98
Identities = 111/426 (26%), Positives = 188/426 (44%), Gaps = 52/426 (12%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 139
P+ +E+ +G Y++DV G+KY D L+ G P++V A +Q++ L + F+
Sbjct: 59 PVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKL--TLTSRAFY 116
Query: 140 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNALGRPNKKKF 197
N + + + ++F KV N+G EA +T KL W Y + K K
Sbjct: 117 N---NVLGEYEEYITKLF---NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKI 170
Query: 198 IARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 257
+ ++ G TL A S S P + F PF+ PG Y
Sbjct: 171 VFAAGNFWGRTLSAISSSTDPTSYDGF---GPFM-------------PGFDIIPY----- 209
Query: 258 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 317
N+L L +AAF+ EP+ G GV+ P Y V+ + ++ +LFIADE+
Sbjct: 210 NDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGL 269
Query: 318 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT 377
R G D +++PD+V KALS P+ A+L ++ I G HG T
Sbjct: 270 ARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKP-----G--EHGST 322
Query: 378 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTE 437
Y G+P+ C VAI AL++ +E N+ E +K+ ++ + S ++ +RG GL+
Sbjct: 323 YGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNAIV 381
Query: 438 FADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKY 496
+ + +G+L + + +I+ +PP ++ +E+ E I
Sbjct: 382 IK---------ETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEII 432
Query: 497 GKALKA 502
K + +
Sbjct: 433 NKTILS 438
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 299 bits (767), Expect = 2e-97
Identities = 116/424 (27%), Positives = 195/424 (45%), Gaps = 57/424 (13%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 139
P+VI K+EG +V D G +Y+D L+ G P+++ A Q N + + F
Sbjct: 19 PIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRV--TLTSRAFH 76
Query: 140 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLV--WYYNNALGRPNKKKF 197
+ +++ ++ V N+G+EA +T +K W Y+ N+ +
Sbjct: 77 S---DQLGPWYEKVAKLT---NKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEI 130
Query: 198 IARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA 257
I + ++HG T+ A S+S + F P + PG Y
Sbjct: 131 IVCEDNFHGRTMGAVSMSSNEEYKRGFG---PML-------------PGIIVIPY----- 169
Query: 258 NNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF 317
+LE L P T AAFI EP+ G G+ PPA + ++ V KK ++LF+ADE+
Sbjct: 170 GDLEALKAAITPNT-AAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGL 228
Query: 318 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT 377
GR G +F CD ++ PD+ KAL PI + ++ V G SHG T
Sbjct: 229 GRTGKVFACDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEP-----G--SHGST 281
Query: 378 YSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTE 437
+ G+P++CAV+I AL++ +E + E+ ++ K +K D+P+I E+RG GL +G E
Sbjct: 282 FGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEI-DNPMITEVRGKGLFIGIE 340
Query: 438 FADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKY 496
P Q + G+L + + +N++ ++PP ++S E+++ K
Sbjct: 341 LN---------EPARPY----CEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKI 387
Query: 497 GKAL 500
L
Sbjct: 388 KAVL 391
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 295 bits (759), Expect = 3e-96
Identities = 105/422 (24%), Positives = 185/422 (43%), Gaps = 59/422 (13%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 139
L+I + +G+ V+D G +Y+D + G LG P +V A Q TL
Sbjct: 28 DLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETL--MAMPQTLP 85
Query: 140 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 199
+ + L + ++ +VF NSG+EAN+ +K + +KKF+A
Sbjct: 86 T---PMRGEFYRTLTAI-LPPELNRVFPVNSGTEANEAALKFARAH------TGRKKFVA 135
Query: 200 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 259
+ + G T+ + S++ P + F P V Y N+
Sbjct: 136 AMRGFSGRTMGSLSVTWEPKYREPF---LPLV-------------EPVEFIPY-----ND 174
Query: 260 LEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 319
+E L ET AA I EPV G GGV P + + + ++ L I DE+ GR
Sbjct: 175 VEALKRAVDEET-AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGR 233
Query: 320 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 379
G F + + I PD+++ AKAL +P+G ++ EV+ + G HG T+
Sbjct: 234 TGKRFAFEHFGIVPDILTLAKALGGG-VPLGVAVMREEVARSM-----PKG--GHGTTFG 285
Query: 380 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFA 439
G+P++ A + A++ + + E+ ++ P F + ++A SP I E+RG GL++G E
Sbjct: 286 GNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLELK 344
Query: 440 DNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYGK 498
+ +P Y ++H +L +G ++ PP ++ E+++ ++
Sbjct: 345 EKAAP------------YIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRA 392
Query: 499 AL 500
L
Sbjct: 393 VL 394
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 291 bits (748), Expect = 7e-94
Identities = 78/435 (17%), Positives = 152/435 (34%), Gaps = 38/435 (8%)
Query: 83 PLVIEKSEGSYVYD-VNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTL---PFYHSF 138
L + +S GSY+ D + G++YLD + +ALG + P LV + S
Sbjct: 36 VLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSN 95
Query: 139 WNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPN----- 193
+ + + + + +FF G+ A + +K + + + + +
Sbjct: 96 SDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 194 -KKKFIARQKSYHGSTLIAASLSGLPALHQKFD--LPAPFVLHTDCPHYWRYAHPGETEE 250
+ + + ++HG + SL+ P + D P Y R
Sbjct: 156 LGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRI---DAP-YMRPGLDEPAMA 211
Query: 251 EYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA 310
+ P IA F+AEP+ G GG +F ++ + ++D L I
Sbjct: 212 ALEAEALRQARAAF-ETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIF 270
Query: 311 DEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLG 370
DEV G GT + + + PD+V+F K + G + +
Sbjct: 271 DEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADNVF-------AV 323
Query: 371 SFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSD--SPIIGEIR 428
T+ G+ A L++ + + E+ + + + + ++ + R
Sbjct: 324 PSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPR 383
Query: 429 GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSPE 487
G GL+ +E Q + ++V +G + + PP +S
Sbjct: 384 GRGLMCAFSLPTTADRDE-----------LIRQLWQRAVIVLPAGADTVRFRPPLTVSTA 432
Query: 488 EVDELISKYGKALKA 502
E+D I+ AL
Sbjct: 433 EIDAAIAAVRSALPV 447
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 289 bits (741), Expect = 4e-93
Identities = 118/425 (27%), Positives = 197/425 (46%), Gaps = 52/425 (12%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 139
+ K +GS V+D GK+Y+D G+ TALG P LV A +Q TL +H+ F
Sbjct: 40 DFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETL--WHTSNVFT 97
Query: 140 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 199
N +P+L L ++L++ A+ +V F NSG+EAN+T KL +Y P K K IA
Sbjct: 98 N---EPALRLGRKLID---ATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIA 151
Query: 200 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 259
++HG +L S+ G P F P + N+
Sbjct: 152 FHNAFHGRSLFTVSVGGQPKYSDGF---GPKP-------------ADIIHVPF-----ND 190
Query: 260 LEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 319
L + T A + EP+ G GGV + + ++ + ++ L + DEV C GR
Sbjct: 191 LHAVKAVMDDHT-CAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGR 249
Query: 320 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 379
G +F Y + PD+++ AKAL P+ A+L + E++ +G SHG TY
Sbjct: 250 TGDLFAYMHYGVTPDILTSAKALGGG-FPVSAMLTTQEIASAF-----HVG--SHGSTYG 301
Query: 380 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEF 438
G+P++CAVA A I +++ ++ +F ++A + I +IRG GL++G E
Sbjct: 302 GNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAEL 361
Query: 439 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYG 497
P G F + G++V +G ++M +P ++ ++ E + ++
Sbjct: 362 K---------PKYKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFA 412
Query: 498 KALKA 502
+A+
Sbjct: 413 QAVGK 417
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 287 bits (736), Expect = 8e-93
Identities = 122/425 (28%), Positives = 203/425 (47%), Gaps = 54/425 (12%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 139
+V+EK +G Y++D KKYLD +G+ ALG + + A AQ++ L H+ ++
Sbjct: 19 DIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKL--LHTSNLYY 76
Query: 140 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 199
N + AK L + AS + +VFFTNSG+E+ + +K Y G +FIA
Sbjct: 77 N---ENIAAAAKNLAK---ASALERVFFTNSGTESIEGAMKTARKYAFNKG-VKGGQFIA 129
Query: 200 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 259
+ S+HG TL A SL+ + F P + G +Y N+
Sbjct: 130 FKHSFHGRTLGALSLTANEKYQKPF---KPLI-------------SGVKFAKY-----ND 168
Query: 260 LEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 319
+ + +T A I E V G GG+ P +++ ++ + + DIL IADE+ C GR
Sbjct: 169 ISSVEKLVNEKT-CAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGR 227
Query: 320 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 379
G F + I PD+++ AKAL + +GA +++ +V+ SN+L + HG TY
Sbjct: 228 SGKFFAYEHAQILPDIMTSAKALGCG-LSVGAFVINQKVA------SNSLEAGDHGSTYG 280
Query: 380 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEF 438
G+P+ CA +I+KE I+E VNK+ P + + + + +G G + G
Sbjct: 281 GNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSL 340
Query: 439 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYG 497
+ + +C+++ +L+ G+N + PP I+ E +DE+ K
Sbjct: 341 DKSVKVAK-----------VIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLR 389
Query: 498 KALKA 502
KALK+
Sbjct: 390 KALKS 394
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 284 bits (728), Expect = 2e-91
Identities = 118/425 (27%), Positives = 196/425 (46%), Gaps = 56/425 (13%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 139
P +GS++YD G YLD +G+ LG S PRLV A Q L H FW
Sbjct: 23 PATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKL--IHCSNLFW 80
Query: 140 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 199
N +P ++LA+ L + + KVFF N+G+EAN+ +K+ Y K + ++
Sbjct: 81 N---RPQMELAELLSK---NTFGGKVFFANTGTEANEAAIKIARKYGKKKS-EKKYRILS 133
Query: 200 RQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 259
S+HG TL + + +G P + F P V PG E+ NN
Sbjct: 134 AHNSFHGRTLGSLTATGQPKYQKPF---EPLV-------------PGFEYFEF-----NN 172
Query: 260 LEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 319
+EDL K + A EP+ G G++P + E+ + + +YD L + DEV C GR
Sbjct: 173 VEDLRRKMSEDV-CAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGR 231
Query: 320 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 379
G +F KY + PD+++ AK L +PIGA++V+ + L HG T+
Sbjct: 232 TGKLFAYQKYGVVPDVLTTAKGLGGG-VPIGAVIVNERAN--------VLEPGDHGTTFG 282
Query: 380 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS-PIIGEIRGTGLILGTEF 438
G+P++C + +K + +E+V + ++ + ++ ++RG GL++G +F
Sbjct: 283 GNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQF 342
Query: 439 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYG 497
+ S E +C ++ +LV +G+N + PP + E+D +
Sbjct: 343 REEVSNRE-----------VATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLK 391
Query: 498 KALKA 502
K L+
Sbjct: 392 KVLQG 396
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 281 bits (721), Expect = 2e-89
Identities = 81/454 (17%), Positives = 160/454 (35%), Gaps = 57/454 (12%)
Query: 82 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYH--SFW 139
E+S G+Y+ DV+G + LD + + +G S P LV N F + +
Sbjct: 45 FFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALG 104
Query: 140 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYY-------------- 185
+ ++ +E L M+++ GS +N+ K ++ +
Sbjct: 105 ILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKE 164
Query: 186 -------NNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH 238
N A G P ++ ++HG T+ + + A+H K D+P+ P
Sbjct: 165 ELETCMINQAPGCP-DYSILSFMGAFHGRTMGCLATTHSKAIH-KIDIPSFDWPIAPFPR 222
Query: 239 Y-WRYAHPGETEEEYSTRLANNLEDLILK--EGPETIAAFIAEPVIGAGGVIPPPATYFE 295
+ + ++ R +EDLI+K + +T+A I EP+ GG +F
Sbjct: 223 LKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFR 282
Query: 296 KVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIK--PDLVSFAKALSSAYMPIGAIL 353
K++ + +K+ F+ DEV G G + + + + D+++F+K + +
Sbjct: 283 KLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTG-GFFHKEE 341
Query: 354 VSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQD 413
P + T+ G P + E + I K +++
Sbjct: 342 FRPNA------------PYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLT 389
Query: 414 GVKAFSD--SPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV 471
G+ I +RG G + D N+ + G+++
Sbjct: 390 GLLDLQARYPQFISRVRGRGTFCSFDTPDESIRNK-----------LISIARNKGVMLGG 438
Query: 472 SGDN-IMMSPPFIMSPEEVDELISKYGKALKATE 504
GD I P + ++ + L +
Sbjct: 439 CGDKSIRFRPTLVFRDHHAHLFLNIFSDILADFK 472
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 273 bits (701), Expect = 1e-87
Identities = 117/423 (27%), Positives = 195/423 (46%), Gaps = 63/423 (14%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHS---FW 139
P+ + +G Y+YD GK+YLD ++G+ +LG + P+L A Q+ L H +
Sbjct: 11 PVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKL--LHVSNLYE 68
Query: 140 NRTTKPSLDLAKELLEMFTASKM-AKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFI 198
N +LA +L++ KVFF NSG+E+ + +KL Y G NK KFI
Sbjct: 69 N---PWQEELAHKLVK---HFWTEGKVFFANSGTESVEAAIKLARKYWRDKG-KNKWKFI 121
Query: 199 ARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLAN 258
+ + S+HG T + S +G P H+ F P V PG + + N
Sbjct: 122 SFENSFHGRTYGSLSATGQPKFHKGF---EPLV-------------PGFSYAKL-----N 160
Query: 259 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 318
+++ + ET A I E + G GGV + K+Q + K+ D+L I DEV G
Sbjct: 161 DIDSVYKLLDEET-AGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIG 219
Query: 319 RLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY 378
R G + +++KPD+++ AK L +PIGAIL EV++ T G SHG T+
Sbjct: 220 RTGEFYAYQHFNLKPDVIALAKGLGGG-VPIGAILAREEVAQSF-----TPG--SHGSTF 271
Query: 379 SGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEF 438
G+P++C + ++ ++ V ++ F++ +K +++G GL+LG E
Sbjct: 272 GGNPLACRAGTVVVDEVEK--LLPHVREVGNYFKEKLKELGKG----KVKGRGLMLGLEL 325
Query: 439 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIM-MSPPFIMSPEEVDELISKYG 497
+ + + G+L+ + ++ PP I+ E +D IS
Sbjct: 326 ERECKD-------------YVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLR 372
Query: 498 KAL 500
+ L
Sbjct: 373 EIL 375
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 137 bits (347), Expect = 1e-35
Identities = 92/459 (20%), Positives = 161/459 (35%), Gaps = 101/459 (22%)
Query: 82 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNT-----LPFY 135
H L I ++G + DV+G YLD G LG PR+ AA L+
Sbjct: 39 HGLFISDAQGVHKTDVDGNVYLD-FFGGHGALVLGHGHPRVNAAIAEALSHGVQYAAS-- 95
Query: 136 HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 195
+ A+ ++ F + + K+ FT SG+E +++ A ++
Sbjct: 96 -------HPLEVRWAERIVAAFPS--IRKLRFTGSGTETTLLALRV------ARAFTGRR 140
Query: 196 KFIARQKSYHG-STLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 254
+ + YHG A+ PAP V ET T
Sbjct: 141 MILRFEGHYHGWHDFSASG-YNSHF----DGQPAPGV-------------LPETTAN--T 180
Query: 255 RLA--NNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA 310
L +++E + + IAAFIAEPV GV P ++ + + ++Y LFI
Sbjct: 181 LLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFIL 240
Query: 311 DEVICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVSPEVSE 360
DEVI F R+G ++PDL AKA + +P G + ++S
Sbjct: 241 DEVISGF-RVG--NHGMQALLDVQPDLTCLAKASAGG-LPGGILGGREDVMGVLSRGSDR 296
Query: 361 VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVK-AFS 419
+ T +G+P++ A AI A+ E ++ ++N + ++ + F+
Sbjct: 297 KVL-HQGTF---------TGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFA 346
Query: 420 DSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWG---------IGAYFGAQCEKHGMLVR 470
+ G + + I A +++
Sbjct: 347 RKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMR------MALILE 400
Query: 471 VSGDNIMMSPP----FI---MSPEEVDELISKYGKALKA 502
G +I F+ E V+ L++ + + L
Sbjct: 401 --GVDI---GGRGSVFLSAQHEREHVEHLVTTFDRVLDR 434
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 130 bits (329), Expect = 3e-33
Identities = 75/353 (21%), Positives = 124/353 (35%), Gaps = 79/353 (22%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNT-----LPFYH 136
PLVI + GS DV+G Y++ G + G S P + AA L
Sbjct: 83 PLVIAQGTGSRFQDVDGHAYVN-FLGEYTAGLFGHSHPVIRAAVERALAVGLNLSTQ--- 138
Query: 137 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 196
T+ A+ + + F + + V FTNSG+EAN + A +K
Sbjct: 139 ------TENEALFAEAVCDRFPS--IDLVRFTNSGTEANLMALAT------ATAITGRKT 184
Query: 197 FIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRL 256
+A YHG L+ + P + +
Sbjct: 185 VLAFDGGYHGG-LLNFASGHAPTNAPYHVVLGVY-------------------------- 217
Query: 257 ANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVI 314
N++E +LK AA + EP++GAGG +P + + ++A + L I DEV+
Sbjct: 218 -NDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVM 276
Query: 315 CAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVSPEVSEVIHS 364
RL G + I DL + K + M GA P
Sbjct: 277 T--SRLS--GGGAQEMLGISADLTTLGKYIGGG-MSFGAFGGRRDLMERFDPARD----- 326
Query: 365 QSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA 417
G+F+H T++ + ++ + AL R ++ +F+ +
Sbjct: 327 -----GAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLNR 374
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 121 bits (305), Expect = 5e-30
Identities = 97/463 (20%), Positives = 167/463 (36%), Gaps = 114/463 (24%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNT-----LPFYH 136
P +++ EG+Y+Y V+G + +D L + LG PR++ A L P
Sbjct: 39 PFYVKRGEGAYLYTVDGARIVD-LVLAYGPLILGHKHPRVLEAVEEALARGWLYGAP--- 94
Query: 137 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 196
+ + LA+++L + F NSG+EA T ++L A G +
Sbjct: 95 ------GEAEVLLAEKILGYVKR--GGMIRFVNSGTEATMTAIRL------ARGYTGRDL 140
Query: 197 FIARQKSYHG---STLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWRYAHPGETEEEY 252
+ YHG + L+AA S A H + +P + V P
Sbjct: 141 ILKFDGCYHGSHDAVLVAAG-SA--AAH--YGVPTSAGV-------------PEAVARL- 181
Query: 253 STRLA--NNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILF 308
T + N++E L + E + IA I EPVI GVIPP + +Q + ++ L
Sbjct: 182 -TLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALL 240
Query: 309 IADEVICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVSPEV 358
I DEV+ F RLG ++I+ D++ K + P+GA+ L++P
Sbjct: 241 ILDEVVTGF-RLG--LEGAQGYFNIEGDIIVLGKIIGGG-FPVGAVAGSREVMSLLTP-- 294
Query: 359 SEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVK-A 417
G + T++ HP++ A + LK +E + + A ++
Sbjct: 295 ----------QGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEV 344
Query: 418 FSDSPIIGEIRGTGLILGTEFADN---------KSPNEPFPPEWGIGAYFGAQCEKHGML 468
+ + I ++ K+ + + ML
Sbjct: 345 LDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFY------VKLH------EEML 392
Query: 469 VRVSGDNIMMSPP------FI---MSPEEVDELISKYGKALKA 502
R G I P F E ++ + +LK
Sbjct: 393 RR--GVFI---APSNLEAVFTGLPHQGEALEIAVEGLRSSLKT 430
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 120 bits (304), Expect = 6e-30
Identities = 108/466 (23%), Positives = 171/466 (36%), Gaps = 120/466 (25%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNT-----LPFYH 136
P+ +E+ +G+Y +DV+G KY+D + G + P + A T P
Sbjct: 38 PIAMERGKGAYFWDVDGNKYID-YLAAYGPIITGHAHPHITKAITTAAENGVLYGTP--- 93
Query: 137 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 196
T + AK L E A + KV F NSG+EA T +++ A + K
Sbjct: 94 ------TALEVKFAKMLKEAMPA--LDKVRFVNSGTEAVMTTIRV------ARAYTGRTK 139
Query: 197 FIARQKSYHG---STLIAASLSGLPALHQKFDLP------APFVLHTDCPHYWRYAHPGE 247
+ YHG L+AA SG P +
Sbjct: 140 IMKFAGCYHGHSDLVLVAAG-SGPST----LGTPDSAGVPQSIAQEVITVPF-------- 186
Query: 248 TEEEYSTRLANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD 305
NN+E L L + +AA + EP++G G++ P + EKV +V +
Sbjct: 187 ----------NNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAG 236
Query: 306 ILFIADEVICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVS 355
L I DEVI AF R +G D + PDL + K + +PIGA V+
Sbjct: 237 ALVIYDEVITAF-RFM--YGGAQDLLGVTPDLTALGKVIGGG-LPIGAYGGKKEIMEQVA 292
Query: 356 PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV 415
P LG T +G+P S A I L++ ++ + E+++++ + G+
Sbjct: 293 P------------LGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGI 340
Query: 416 K-AFSDSPIIGEIRGTGLILGTEFADN---------KSPNEPFPPEWGIGAYFGAQCEKH 465
+ I + L F N + E F G +F
Sbjct: 341 LEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMF------GKFF------K 388
Query: 466 GMLVRVSGDNIMMSPP------FI---MSPEEVDELISKYGKALKA 502
ML G N+ P F+ + E+++ I G+A A
Sbjct: 389 LMLQE--GVNL---APSKYEAWFLTTEHTKEDIEYTIEAVGRAFAA 429
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 119 bits (301), Expect = 2e-29
Identities = 88/357 (24%), Positives = 151/357 (42%), Gaps = 74/357 (20%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNT-----LPFYH 136
P+V ++ + +Y +DV+G +Y+D G W A G + P ++ A + P
Sbjct: 35 PIVFDRVKDAYAWDVDGNRYID-YVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAP--- 90
Query: 137 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 196
LA+ + + + + V F NSG+EA +++ + K
Sbjct: 91 ------CALENVLAEMVNDAVPS--IEMVRFVNSGTEACMAVLRI------MRAYTGRDK 136
Query: 197 FIARQKSYHG---STLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWRYAHPGETEEEY 252
I + YHG L+ A SG+ LP +P V P +T
Sbjct: 137 IIKFEGCYHGHADMFLVKAG-SGVAT----LGLPSSPGV-------------PKKTTANT 178
Query: 253 STRLANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIA 310
T N+LE + + E P IA I EP++G G I P A + E ++ + ++D L +
Sbjct: 179 LTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVF 238
Query: 311 DEVICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVSPEVSE 360
DEVI F R+ +G +K+ + PDL + K + +P+GA LV+P
Sbjct: 239 DEVITGF-RIA--YGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAP---- 290
Query: 361 VIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA 417
G T SG+P++ I+ L++ ++ E +++I + DG+ A
Sbjct: 291 --------AGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLA 339
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 117 bits (297), Expect = 5e-29
Identities = 85/362 (23%), Positives = 139/362 (38%), Gaps = 84/362 (23%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNT-----LPFYH 136
PL IE+++G+Y++DV+GK Y+D G W LG + P + A + P
Sbjct: 36 PLFIERADGAYLFDVDGKAYID-YVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAP--- 91
Query: 137 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 196
T+ + +A+ + ++ M V NSG+EA + ++L A G + K
Sbjct: 92 ------TEMEVKMAQLVTDLVPT--MDMVRMVNSGTEATMSAIRL------ARGYTGRDK 137
Query: 197 FIARQKSYHG---STLIAASLSGLPALHQKFDLP------APFVLHTDCPHYWRYAHPGE 247
I + YHG L+ A SG P F HT Y
Sbjct: 138 IIKFEGCYHGHADCLLVKAG-SGALT----LGQPNSPGVPTDFAKHTLTCTY-------- 184
Query: 248 TEEEYSTRLANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD 305
N+L + ++ P+ +A I EPV G IPP + ++A+ ++
Sbjct: 185 ----------NDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFG 234
Query: 306 ILFIADEVICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVS 355
L I DEV+ F R+ D Y + PDL K + MP+GA ++
Sbjct: 235 ALLIIDEVMTGF-RVA--LAGAQDYYHVIPDLTCLGKIIGGG-MPVGAFGGRREVMNALA 290
Query: 356 PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV 415
P G T SG+P++ A L + + E + ++ G+
Sbjct: 291 P------------TGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGL 338
Query: 416 KA 417
+
Sbjct: 339 RH 340
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 114 bits (288), Expect = 8e-28
Identities = 95/354 (26%), Positives = 146/354 (41%), Gaps = 69/354 (19%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAA--ATAQLNTLPFYHSFW 139
PL +E+ +GS VYD++G +Y+D W G + R+V A A A+ T SF
Sbjct: 36 PLFMERGKGSKVYDIDGNEYID-YVLSWGPLIHGHANDRVVEALKAVAERGT-----SF- 88
Query: 140 NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIA 199
T+ LAK ++E + + V NSG+EA + ++L A G + K +
Sbjct: 89 GAPTEIENKLAKLVIERVPS--IEIVRMVNSGTEATMSALRL------ARGYTGRNKILK 140
Query: 200 RQKSYHG---STLIAASLSGLPALHQKFDLP-APFVLHTDCPHYWRYAHPGETEEEYSTR 255
YHG S LI A SG+ LP +P V P + T
Sbjct: 141 FIGCYHGHGDSLLIKAG-SGVAT----LGLPDSPGV-------------PEGVAKNTITV 182
Query: 256 LANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEV 313
N+LE + ++ + IA I EPV G GV+PP + E ++ V ++ L I DEV
Sbjct: 183 AYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEV 242
Query: 314 ICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVSPEVSEVIH 363
+ F R+ + C Y + PDL K + +P+GA V+P
Sbjct: 243 MTGF-RVA--YNCGQGYYGVTPDLTCLGKVIGGG-LPVGAYGGKAEIMRQVAP------- 291
Query: 364 SQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA 417
G T SG+P++ A E L + + A + G++
Sbjct: 292 -----SGPIYQAGTLSGNPLAMAAGYETLVQLTP-ESYVEFERKAEMLEAGLRK 339
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus
thermophilus}
Length = 424
Score = 108 bits (273), Expect = 7e-26
Identities = 92/363 (25%), Positives = 145/363 (39%), Gaps = 86/363 (23%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTA-LGGSEPRLVAAATAQLNT-----LPFYH 136
P + + EG+YV+D +G +YLD W LG + P+++A L P
Sbjct: 35 PPFLVRGEGAYVWDADGNRYLD-YVMSWGPLILGHAHPKVLARVRETLERGLTFGAP--- 90
Query: 137 SFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKK 196
+ + LAK++ + + V F NSG+EA + ++L A G +
Sbjct: 91 ------SPLEVALAKKVKRAYPF--VDLVRFVNSGTEATMSALRL------ARGYTGRPY 136
Query: 197 FIARQKSYHG---STLIAASLSGLPALHQKFDLP------APFVLHTDCPHYWRYAHPGE 247
+ + +YHG L+ A SG +P + T Y
Sbjct: 137 IVKFRGNYHGHADGLLVEAG-SGALT----LGVPSSAGVPEEYAKLTLVLEY-------- 183
Query: 248 TEEEYSTRLANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYD 305
N+ E L +LK E IAA I EPV+G GV+ P + + + K Y
Sbjct: 184 ----------NDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYG 232
Query: 306 ILFIADEVICAFGRLGTMFGC--DKYSIKPDLVSFAKALSSAYMPIGAI--------LVS 355
+L IADEV+ F RL FG + +KPDLV+ K L +P A V+
Sbjct: 233 VLLIADEVMTGF-RLA--FGGATELLGLKPDLVTLGKILGGG-LPAAAYAGRREIMEKVA 288
Query: 356 PEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIV-EQVNKIAPKFQDG 414
P LG T SG+P++ A + L++ +E + + + + G
Sbjct: 289 P------------LGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAG 336
Query: 415 VKA 417
+K
Sbjct: 337 LKE 339
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 58.6 bits (141), Expect = 2e-09
Identities = 33/256 (12%), Positives = 72/256 (28%), Gaps = 31/256 (12%)
Query: 162 MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 221
+ + G A + K + + +T L+G A+
Sbjct: 91 YDYIIPAHQGRGAE--NILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAI- 147
Query: 222 QKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVI 281
++ ++ W+ L++ I + G + I A ++
Sbjct: 148 ---NIVTEKAFDSETYDDWK-----------GDFDIKKLKENIAQHGADNIVAIVSTVTC 193
Query: 282 GAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAF------GRLGTMFGCDKYSIKPDL 335
+ G P + ++V + K++ I + D R + D+
Sbjct: 194 NSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDM 253
Query: 336 VSFAKALS-----SAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIE 390
+A AL+ + IG ++ + E+ TY G +
Sbjct: 254 YKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLA---GRDMA 310
Query: 391 ALKIYKERNIVEQVNK 406
A+ E E+
Sbjct: 311 AMVQGLEEGTEEEYLH 326
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 1e-08
Identities = 86/584 (14%), Positives = 155/584 (26%), Gaps = 222/584 (38%)
Query: 14 SSLKSQIGSFTKHFSASKSLSENLYQ-------IPLLARFYGTDASSQKEDSTTNGFKG- 65
S L+ Q F K +E L+ +F G SS E S F
Sbjct: 31 SQLQEQ---FNKILPEP---TEGFAADDEPTTPAELVGKFLGY-VSSLVEPSKVGQFDQV 83
Query: 66 -HDMLAPFTAGW-QSTDVHPLV-------------------------------IEKSEGS 92
+ L F + + D+H L +K S
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 93 -----------YVYDV-----NGKKYLDSLAGLWCTALGGSEP---RLVAAATAQLNTLP 133
+ + N Y + L L+ T L+ + L+ L
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT----YHVLVGDLIKFSAETLSELI 199
Query: 134 ---------FYHSF----W--NRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQ 178
F W N + P D + S + G Q
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKD--------YLLS--IPISCPLIGV----IQ 245
Query: 179 VKLVWYYN--NALG-RPNKKKFIARQKSYHGSTLIAA---------------SLSGLPAL 220
L Y LG P + + + + H L+ A + L
Sbjct: 246 --LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 221 -------HQKF---DLPAPFVLHTDCPHYWRYAHP-----GETEEEYSTRLANNLEDLIL 265
++ + LP P +L + P T+E+ ++D +
Sbjct: 304 FFIGVRCYEAYPNTSLP-PSILEDSLENNEGVPSPMLSISNLTQEQ--------VQDYVN 354
Query: 266 K---EGPETIAAFIA---EP---VIGAGGVIPPPATY-----FEKVQAVVKKYDILFIAD 311
K P I+ V+ +G PP + Y K +A
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVV-SG---PPQSLYGLNLTLRKAKAPS---------- 400
Query: 312 EVICAFGRLGTMFGCDKYSIKPDLVSFAK---ALSSAYMPIGAILVSPEVSEVIHSQSNT 368
G D+ I F++ S+ ++P+ + S + +
Sbjct: 401 -------------GLDQSRIP-----FSERKLKFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 369 LGSFSHGFTYSGH----PVSCAVAIEALKIYKE---RNIVEQVNKIAPKFQDGVKAFSDS 421
L + +++ PV L++ IV+ + + P + F +
Sbjct: 443 LV--KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR-LPVKWETTTQFKAT 499
Query: 422 PII----GEI-----------RGTG--LILGTEFADNKSPNEPF 448
I+ G GTG +I+ + +P++ +
Sbjct: 500 HILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL--DINPDDDY 541
Score = 52.0 bits (124), Expect = 4e-07
Identities = 70/407 (17%), Positives = 113/407 (27%), Gaps = 161/407 (39%)
Query: 5 KMVTSKLLQSSLKSQI---------GSFTKHFSASKSLSENLYQI--PLLARFYGTDA-- 51
K S L ++ + G+ +F + L + LYQ L+ A
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF---EELRD-LYQTYHVLVGDLIKFSAET 194
Query: 52 ----SSQKEDSTTNGFKGHDMLAPFTAGW--QSTDVH------------PLVIEKSEGSY 93
D+ +G ++L W ++ PL+ Y
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILE-----WLENPSNTPDKDYLLSIPISCPLIGVIQLAHY 249
Query: 94 -----VYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLP-FYHS--------FW 139
+ + L G A G S+ + A A A+ ++ F+ S F+
Sbjct: 250 VVTAKLLGFTPGELRSYLKG----ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Query: 140 --NRTTK--PSLDLAKELLEMF------TASKMAKVFFTNSGSEANDTQV-KLVWYYNNA 188
R + P+ L +LE S M + S QV V N+
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI----SN--LTQEQVQDYVNKTNSH 359
Query: 189 LGRPNKKKFIARQKSYHGSTLI-----------AASLSGL-------------------- 217
L K+ I+ L+ SL GL
Sbjct: 360 LP-AGKQVEIS---------LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 218 ----PALHQKFDLP--APFVLHTDCPHYWRYAHPGETEEE----------------YSTR 255
+F LP +PF H+ H A ++ Y T
Sbjct: 410 SERKLKFSNRF-LPVASPF--HS---HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 256 LANNLE-----------DLILKEGP---ETIAAFIAEPVI--GAGGV 286
++L D I++ P ET F A ++ G GG
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRL-PVKWETTTQFKATHILDFGPGGA 509
Score = 42.7 bits (100), Expect = 3e-04
Identities = 44/298 (14%), Positives = 70/298 (23%), Gaps = 110/298 (36%)
Query: 162 MAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALH 221
M + S + + VW N A ++ T G L
Sbjct: 1631 MGMDLYKTSKA------AQDVW--NRA-------------DNHFKDTY------GFSILD 1663
Query: 222 QKFDLPAPFVLHTDCPH----YWRY-AHPGETEEEYSTRLANNLEDL------ILKEGPE 270
+ P +H Y A ET + + +++ +
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Query: 271 -----T-----------IAAFIAEPVIGAGGVIPPPATYF------EKVQAVVKKY---- 304
T AAF E + + G+IP A F E Y
Sbjct: 1724 GLLSATQFTQPALTLMEKAAF--E-DLKSKGLIPADA-TFAGHSLGE--------YAALA 1771
Query: 305 ---DILFIAD--EVICAFGRL------GTMFGCDKYSIKPDLVSFAKALSSAYMP--IGA 351
D++ I EV+ G G Y + A P + A
Sbjct: 1772 SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM------------IAINPGRVAA 1819
Query: 352 ILVSPEVSEVIHSQSNTLGSF-------SHGFTY--SGHPVSCAVAIEALKIYKERNI 400
+ V+ G Y +G + L K + I
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877
Score = 37.3 bits (86), Expect = 0.013
Identities = 46/314 (14%), Positives = 92/314 (29%), Gaps = 122/314 (38%)
Query: 240 WRYA--HPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGG-VIP---PPATY 293
W A H ++ Y + + I+ P + G G I +
Sbjct: 1646 WNRADNH---FKDTYGFSILD-----IVINNPVNLTIHFG----GEKGKRIRENYSAMIF 1693
Query: 294 FEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAIL 353
V +K I +E ++ F +K + F + P A+
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSY-----TFRSEKGLL--SATQFTQ-------P--ALT 1737
Query: 354 -VSPEVSEVIHSQSNTLGSFSHGFTYSGHPV---S--CAVA----IE-ALKIYKER---- 398
+ E + S+ G T++GH + + ++A IE +++ R
Sbjct: 1738 LMEKAAFEDLKSK----GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTM 1793
Query: 399 -NIVEQ------------VN--KIAPKF-QDGVKAFSDSPIIGEI-RGTGLILGTEFA-D 440
V + +N ++A F Q+ ++ ++ + + TG ++ E
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY-----VVERVGKRTGWLV--EIVNY 1846
Query: 441 NKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKAL 500
N N+ Q V +GD +AL
Sbjct: 1847 N-VENQ--------------Q------YV-AAGDL----------------------RAL 1862
Query: 501 KATEERVKELKSQQ 514
+ +K Q+
Sbjct: 1863 DTVTNVLNFIKLQK 1876
Score = 28.1 bits (62), Expect = 8.4
Identities = 39/197 (19%), Positives = 61/197 (30%), Gaps = 69/197 (35%)
Query: 355 SPEVSEV-----IHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAP 409
S +V H + +T G FS +PV+ + K + I E N A
Sbjct: 1639 SKAAQDVWNRADNHFK-DTYG-FSILDIVINNPVNLTIHFGG---EKGKRIRE--NYSAM 1691
Query: 410 KFQDGVKAFSDS-PIIGEI---------RG-TGLILGTEFADNKSPNEPFPP-------- 450
F+ V + I EI R GL+ T+F P
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ---------PALTLMEKA 1742
Query: 451 ------EWGI---GAYF-GAQCEKH--G---MLVRVSGDNIMMSPPFIMSPEEVDELISK 495
G+ A F G H G L ++ +MS E + E++
Sbjct: 1743 AFEDLKSKGLIPADATFAG-----HSLGEYAALASLAD---------VMSIESLVEVVFY 1788
Query: 496 YGKALKATEERVKELKS 512
G ++ R + +S
Sbjct: 1789 RGMTMQVAVPRDELGRS 1805
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 6e-07
Identities = 59/340 (17%), Positives = 99/340 (29%), Gaps = 98/340 (28%)
Query: 59 TTNGFKGHDMLAPFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLD-SLAGLWCTALGGS 117
TT + D L+ T S D H + + E + KYLD L L +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL----LKYLDCRPQDLPREVLTTN 326
Query: 118 EPRLVAAATAQLNTLPFYHSFW--------NRTTKPSLDL--AKELLEMFTASKMAKVFF 167
PR ++ + W + SL++ E +MF VF
Sbjct: 327 -PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF---DRLSVF- 381
Query: 168 TNSGSEANDTQV-----KLVWYYN---------NALGRPNKKKFIARQK-----SYHGST 208
+ L+W+ N L +K + +Q S
Sbjct: 382 ------PPSAHIPTILLSLIWFDVIKSDVMVVVNKL---HKYSLVEKQPKESTISIPSIY 432
Query: 209 L-IAASLSGLPALHQK----------FDLPAPFVLHTDCPHYWRYAHPG------ETEEE 251
L + L ALH+ FD + D Y+ Y+H G E E
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD--QYF-YSHIGHHLKNIEHPER 489
Query: 252 YS--TRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFI 309
+ + + F+ + + + +Q +K Y +I
Sbjct: 490 MTLFRMVFLDFR-------------FLEQKIRHDSTAWNASGSILNTLQ-QLKFYK-PYI 534
Query: 310 AD------EVICAFG----RLGTMFGCDKYSIKPDLVSFA 339
D ++ A ++ C KY+ DL+ A
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYT---DLLRIA 571
Score = 39.5 bits (91), Expect = 0.003
Identities = 48/365 (13%), Positives = 96/365 (26%), Gaps = 133/365 (36%)
Query: 217 LPALHQKF----------DLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILK 266
L F D+P + + H + T L +L
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII-----MSKDAVSGTLR---LFWTLLS 73
Query: 267 EGPETIAAFIAEPV----------IGAGGVIPPPAT--YFEKVQ------AVVKKYDI-- 306
+ E + F+ E + I P T Y E+ V KY++
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 307 --LFIA----------DEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSA--------- 345
++ + + G + G K + + S
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDG----VLGSGK-TW---VA--LDVCLSYKVQCKMDFK 183
Query: 346 --YMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT-YSGHPVSCAVAIEALKIYKERNIVE 402
++ + SPE V+ L +T S H + + I +++ R +
Sbjct: 184 IFWLNLKNCN-SPE--TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 403 QVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADN-KSPNEPFPPEWGIGAYFGAQ 461
+ + L+L N ++ F
Sbjct: 241 KPYENCL----------------------LVL-----LNVQNAK--------AWNAFNLS 265
Query: 462 CEKHGMLV---------RVSGDN----IMMSPPFIMSPEEVDELISKYGKALKATEERVK 508
C+ +L+ +S + ++P+EV L+ KY + R +
Sbjct: 266 CK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY------LDCRPQ 316
Query: 509 ELKSQ 513
+L +
Sbjct: 317 DLPRE 321
Score = 33.7 bits (76), Expect = 0.18
Identities = 26/172 (15%), Positives = 50/172 (29%), Gaps = 44/172 (25%)
Query: 357 EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALK----------IYKERNIVEQVNK 406
E E + + L F F + C + K I ++ V +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDN---FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 407 I----APKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQC 462
+ K ++ V+ F L + +F + E P Y
Sbjct: 67 LFWTLLSKQEEMVQKFV---------EEVLRINYKFLMSPIKTEQRQPSMMTRMYI---- 113
Query: 463 EKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKATEERVKELKSQQ 514
E+ R+ DN + + + + +L +AL EL+ +
Sbjct: 114 EQRD---RLYNDNQVFAKYNVSRLQPYLKLR----QAL-------LELRPAK 151
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
structural genomics, JCSG; HET: MSE LLP; 1.70A
{Eubacterium rectale}
Length = 376
Score = 32.2 bits (74), Expect = 0.40
Identities = 28/141 (19%), Positives = 49/141 (34%), Gaps = 26/141 (18%)
Query: 295 EKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPD-LVSFA-KALSSAYMP--IG 350
+ KK ++ F+ D V AF F ++ D +++ + K L+ P I
Sbjct: 164 MMIGEFCKKNNMFFVCDCV-SAFL--ADPFNMNECGA--DVMITGSQKVLA---CPPGIS 215
Query: 351 AILVSPEVSEVIHSQSNT---------LGSFSHGFTYSGHPVSCAVAI-EALKIYKERNI 400
I+++P E + L + G T V + I E LK K+
Sbjct: 216 VIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGG 275
Query: 401 VEQV----NKIAPKFQDGVKA 417
+ A F+ +K
Sbjct: 276 ADAEVARIASQAADFRAKIKD 296
>2x47_A Macro domain-containing protein 1; signaling protein, signal
transduction, estrogen signaling; 1.70A {Homo sapiens}
Length = 235
Score = 30.4 bits (69), Expect = 1.00
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 14/65 (21%)
Query: 224 FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLA----NNLEDLILKEGPETIAAFIAEP 279
+ LPA +V+HT P + + E L ++L+ L+L+ ++ AF P
Sbjct: 126 YRLPAKYVIHTVGPIAYGEPSASQAAE-----LRSCYLSSLD-LLLEHRLRSV-AF---P 175
Query: 280 VIGAG 284
I G
Sbjct: 176 CISTG 180
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 31.0 bits (71), Expect = 1.0
Identities = 33/173 (19%), Positives = 53/173 (30%), Gaps = 36/173 (20%)
Query: 269 PETIAAFIAEPVIGA---------GGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 319
PE +A + GV+ P E + A+ K+ LF D V G
Sbjct: 113 PEAVARALKRRRYRMVALVHGETSTGVLNP----AEAIGALAKEAGALFFLDAV-TTLG- 166
Query: 320 LGTMFGCDKYSIKPDLVSFA--KALSSAYMP--IGAILVSPEVSEVIHSQ-------SNT 368
F + D K LS P + I S E + + +
Sbjct: 167 -MLPFSMRAMGV--DYAFTGSQKCLS---APPGLAPIAASLEARKAFTGKRGWYLDLARV 220
Query: 369 LGSFSHGFTYSGHPVSCAVAI-EALKIYKE---RNIVEQVNKIAPKFQDGVKA 417
+ G + PV A+ EAL + E + ++ + +KA
Sbjct: 221 AEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKA 273
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A
{Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 29.9 bits (68), Expect = 2.3
Identities = 23/143 (16%), Positives = 40/143 (27%), Gaps = 28/143 (19%)
Query: 295 EKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMP--IG 350
+ + A+V + I D V +FG G + D+ K L P +
Sbjct: 154 DAIGALVSAHGAYLIVDAV-SSFG--GMKTHPEDCKA--DIYVTGPNKCLG---APPGLT 205
Query: 351 AILVSPEVSEVIHSQSNTLGSF------------SHGFTYSGHPVSCAVAI-EALKIYKE 397
+ VS + + + VS + AL +Y
Sbjct: 206 MMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLN 265
Query: 398 R---NIVEQVNKIAPKFQDGVKA 417
+ + A + GV A
Sbjct: 266 EGPEAVWARHALTAKAMRAGVTA 288
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: PLP; 1.70A {Nostoc SP}
SCOP: c.67.1.3
Length = 393
Score = 29.9 bits (68), Expect = 2.3
Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 28/143 (19%)
Query: 295 EKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMP--IG 350
E V + +++ L + D V + G G D + + DL K L
Sbjct: 179 EGVGELCREFGTLLLVDTV-TSLG--GVPIFLDAWGV--DLAYSCSQKGLG---CSPGAS 230
Query: 351 AILVSPEVSEVIHSQSNTLGSF------------SHGFTYSGHPVSCAVAI-EALKIYKE 397
+S E + + + ++ S + P++ A+ EAL++ +
Sbjct: 231 PFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQ 290
Query: 398 R---NIVEQVNKIAPKFQDGVKA 417
N ++ K + ++
Sbjct: 291 EGLANCWQRHQKNVEYLWERLED 313
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein,
PLP-dependent transferase; HET: LLP; 1.75A {Aedes
aegypti} PDB: 2hui_A* 2huu_A*
Length = 393
Score = 29.5 bits (67), Expect = 2.5
Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 31/146 (21%)
Query: 295 EKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMP--IG 350
E V A+ +++ L I D V + G G D++ I D + K L P I
Sbjct: 164 EGVGALCHQHNCLLIVDTV-ASLG--GAPMFMDRWEI--DAMYTGSQKVLG---APPGIT 215
Query: 351 AILVSPEVSEVIHSQSNTLGSF------------SHGFTYSGH---PVSCAVAI-EALKI 394
+ S E ++ + + G H + + EA+ +
Sbjct: 216 PVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAM 275
Query: 395 YKER---NIVEQVNKIAPKFQDGVKA 417
E ++ + A + G++
Sbjct: 276 ACEEGLPALIARHEDCAKRLYRGLQD 301
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative
aminotransferase, structural genomics, center for
structural genomics, JCSG; HET: PLP; 1.65A {Mus
musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Length = 393
Score = 29.5 bits (67), Expect = 2.6
Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 31/146 (21%)
Query: 295 EKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMP--IG 350
+ + +Y L + D V + G G D+ I D++ + K L+ P I
Sbjct: 168 DGFGELCHRYQCLLLVDSV-ASLG--GVPIYMDQQGI--DIMYSSSQKVLN---APPGIS 219
Query: 351 AILVSPEVSEVIHSQSNTLGSF---------------SHGFTYSGHPVSCAVAI-EALKI 394
I + + ++S+ SF + PV+ + E+L +
Sbjct: 220 LISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLAL 279
Query: 395 YKER---NIVEQVNKIAPKFQDGVKA 417
E+ N + + ++
Sbjct: 280 IAEQGLENCWRRHREATAHLHKHLQE 305
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 2.8
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 17/43 (39%)
Query: 86 IEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQ 128
++K + S K Y D S P L AT +
Sbjct: 22 LKKLQASL------KLYAD-----------DSAPALAIKATME 47
Score = 27.6 bits (60), Expect = 5.9
Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 22/38 (57%)
Query: 10 KLLQSSLKSQIGSFTKHFSASKSLSENLY---QIPLLA 44
K LQ+SLK LY P LA
Sbjct: 23 KKLQASLK-------------------LYADDSAPALA 41
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural
genomics consortium, SGC, transferase, PARP14 macro 2;
HET: AR6; 2.20A {Homo sapiens}
Length = 221
Score = 28.8 bits (65), Expect = 3.6
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 224 FDLPAPFVLHTDCPHYWRYAHPGETEEE 251
++L +VLH P + G T
Sbjct: 107 WNLDCRYVLHVVAPEW----RNGSTSSL 130
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 28.7 bits (65), Expect = 4.2
Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 31/144 (21%)
Query: 295 EKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMP--IG 350
++ V K++D L D V A G G DK+ + D+V + KA +P +
Sbjct: 166 PELAKVAKEHDKLVFVDAV-SAMG--GADIKFDKWGL--DVVFSSSQKAFG---VPPGLA 217
Query: 351 AILVSPEVSEVIHSQSNTLGSF------------SHGFTYSGHPVSCAVAI-EALKIYKE 397
S E+ + + T S P+ I AL+I ++
Sbjct: 218 IGAFSERFLEIA--EKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEK 275
Query: 398 RNIVEQVNK----IAPKFQDGVKA 417
E+ + A ++GV+
Sbjct: 276 MGGKEKWLEMYEKRAKMVREGVRE 299
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat
repeat, VON willebrand factor A, rossmann fold, midas
motif', RNA binding protein; 1.95A {Xenopus laevis}
SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Length = 538
Score = 29.1 bits (64), Expect = 4.5
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 205 HGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 259
GST A + + D+ F++ TDC HP ++Y ++
Sbjct: 442 MGSTDCALPMLWAQKTNTAADI---FIVFTDCETNVEDVHPATALKQYREKMGIP 493
>3frm_A Uncharacterized conserved protein; APC61048, staphylococcus
epidermidis ATCC structural genomics, PSI-2, protein
structure initiative; HET: MES; 2.32A {Staphylococcus
epidermidis}
Length = 254
Score = 28.4 bits (63), Expect = 4.8
Identities = 22/156 (14%), Positives = 48/156 (30%), Gaps = 12/156 (7%)
Query: 134 FYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPN 193
+ + W T P+++ + +E+ K N S + + N +
Sbjct: 37 YASNTWIYKTMPTMNQWLKDIEVQ------KKMHLNQSSY----HLSFSFPANEKIDEVL 86
Query: 194 KKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWR--YAHPGETEEE 251
+K L L L +K D+ V + Y A +
Sbjct: 87 LEKIRELGFQIGVLELYVIEAKALKELSRKRDVDIQLVSSNNINDYLHVYDAFARPFGDS 146
Query: 252 YSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVI 287
Y+ + ++ + E + A++ +G +I
Sbjct: 147 YANMVKQHIYSSYNLDDIERLVAYVNHQPVGIVDII 182
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent
enzymes, purine metabolism transaminases,
aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Length = 416
Score = 28.4 bits (64), Expect = 5.3
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
Query: 295 EKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMP--IG 350
+ + + D LFI D V G G D++ I D K LS +P +
Sbjct: 156 KAIGEACRTEDALFIVDAV-ATIG--GCEVKVDEWKI--DAAIGGTQKCLS---VPSGMA 207
Query: 351 AILVSPEVSEVIHS 364
I + V++VI +
Sbjct: 208 PITYNERVADVIAA 221
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 28.3 bits (64), Expect = 6.7
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 10/78 (12%)
Query: 295 EKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFA--KALSSAYMP-IGA 351
++V A+ +Y +I D + +FG G I D + + K + +P
Sbjct: 151 DEVGALAHRYGKTYIVDAM-SSFG--GIPMDIAALHI--DYLISSANKCIQG--VPGFAF 203
Query: 352 ILVSPEVSEVIHSQSNTL 369
++ + S +L
Sbjct: 204 VIAREQKLAACKGHSRSL 221
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON
willebrand factor A domain, beta- RNA binding protein;
1.89A {Deinococcus radiodurans}
Length = 535
Score = 28.3 bits (62), Expect = 7.3
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 201 QKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANN 259
Q G T A + D FV++TD + HP ++Y+ ++
Sbjct: 434 QSVSFGGTDCAQPILWAAQERLDVDT---FVVYTDNETWAGQVHPTVALDQYAQKMGRA 489
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 28.0 bits (63), Expect = 8.0
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 295 EKVQAVVKKYDILFIADEV 313
E V ++ +++D++ I DEV
Sbjct: 197 ELVASLCQQHDVVCITDEV 215
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein,
oxidoreductase, thiamine diphosphate, thiamine
pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A
{Escherichia coli} PDB: 2jgd_B*
Length = 933
Score = 28.3 bits (64), Expect = 8.3
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 483 IMSPEEVDELISKYGKALKATEERVKELKSQQ 514
+ + E+ E+++ Y AL A + V E +
Sbjct: 496 VATLEDATEMVNLYRDALDAGDCVVAEWRPMN 527
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 28.1 bits (63), Expect = 8.5
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 295 EKVQAVVKKYDILFIADEV 313
E V + KK+++L ++DEV
Sbjct: 205 EVVANLCKKWNVLCVSDEV 223
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase,
polymorphism, rotamase, structural genomics, structural
genomics consortium, SGC; 1.80A {Homo sapiens}
Length = 102
Score = 26.4 bits (59), Expect = 9.2
Identities = 8/15 (53%), Positives = 8/15 (53%), Gaps = 1/15 (6%)
Query: 282 GAGGVIPPPAT-YFE 295
GA IP AT FE
Sbjct: 76 GAPPKIPGGATLVFE 90
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 28.0 bits (63), Expect = 9.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 295 EKVQAVVKKYDILFIADEV 313
+ + + K+D L I+DEV
Sbjct: 190 QVIADLCVKHDTLCISDEV 208
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 27.7 bits (62), Expect = 9.4
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 295 EKVQAVVKKYDILFIADEV 313
+ + K++++ I+DEV
Sbjct: 224 TTLGNICVKHNVVIISDEV 242
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain,
NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A
{Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A
3ewp_A*
Length = 176
Score = 27.2 bits (61), Expect = 9.5
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 13/61 (21%)
Query: 224 FDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGA 283
F V + P R+ E+ + N +L +G PV+
Sbjct: 87 FVKGIQCVNNVVGP---RHGDNNLHEKLVAA-YKN-----VLVDGVVNY-VV---PVLSL 133
Query: 284 G 284
G
Sbjct: 134 G 134
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.393
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,890,508
Number of extensions: 489614
Number of successful extensions: 1585
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1377
Number of HSP's successfully gapped: 92
Length of query: 514
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 416
Effective length of database: 3,965,535
Effective search space: 1649662560
Effective search space used: 1649662560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)