RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 010250
(514 letters)
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 286 bits (732), Expect = 1e-92
Identities = 102/431 (23%), Positives = 177/431 (41%), Gaps = 46/431 (10%)
Query: 75 GWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF 134
G + P+ +E+ +G Y++DV G+KY D L+ + G P++V A +Q++ L
Sbjct: 16 GAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTL 75
Query: 135 YHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPN- 193
+ L + + KV N+G EA +T KL + +
Sbjct: 76 TSRAFYNN-----VLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQK 130
Query: 194 -KKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEY 252
K K + ++ G TL A S S P + F P
Sbjct: 131 YKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY---------------- 174
Query: 253 STRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADE 312
N+L L +AAF+ EP+ G GV+ P Y V+ + ++ +LFIADE
Sbjct: 175 -----NDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADE 229
Query: 313 VICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSF 372
+ R G D +++PD+V KALS P+ A+L ++ I
Sbjct: 230 IQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIK-------PG 282
Query: 373 SHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGL 432
H TY G+P+ C VAI AL++ +E N+ E +K+ ++ + ++ +RG GL
Sbjct: 283 EHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPS-DVVTAVRGKGL 341
Query: 433 ILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSPEEVDE 491
+ + K + + +G+L + + + I +PP ++ +E+ E
Sbjct: 342 LNAIVIKETKDWD---------AWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRE 392
Query: 492 LISKYGKALKA 502
I K + +
Sbjct: 393 SIEIINKTILS 403
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 275 bits (704), Expect = 2e-88
Identities = 105/432 (24%), Positives = 178/432 (41%), Gaps = 43/432 (9%)
Query: 75 GWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPF 134
G + D P+V+++++G +VYDVN K+Y D L+ G P ++ A Q L
Sbjct: 14 GAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTI 73
Query: 135 YHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNK 194
+ L + + L + T + + ++ W Y N
Sbjct: 74 CSRAF---FSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENM 130
Query: 195 KKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYST 254
K + + ++ G TL S S F AP
Sbjct: 131 AKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEA------------- 177
Query: 255 RLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVI 314
L + + AFI EP+ G GVI P Y + V + KKY++LF+ADEV
Sbjct: 178 --------LEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQ 229
Query: 315 CAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSH 374
GR G + Y++KPD++ KALS + PI A+L + ++ VI H
Sbjct: 230 TGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIK-------PGEH 282
Query: 375 GFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGV-KAFSDSPIIGEIRGTGLI 433
G TY G+P++ ++ +EAL + + E K+ F + + + DS I+ ++RG GL+
Sbjct: 283 GSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLL 342
Query: 434 LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSPEEVDEL 492
EF + + +++G++ R D I ++PP ++ E++DE
Sbjct: 343 CAIEFKNELVNV----------LDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDEC 392
Query: 493 ISKYGKALKATE 504
K +K +
Sbjct: 393 TEIIVKTVKFFD 404
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 274 bits (701), Expect = 9e-88
Identities = 103/430 (23%), Positives = 197/430 (45%), Gaps = 30/430 (6%)
Query: 81 VHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWN 140
+HP+ +++E V+DV G++YLD G+ G P++VAA AQL L + F
Sbjct: 21 IHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS-HTCFQV 79
Query: 141 RTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIAR 200
+P L+L + + + K +GSEA + VK+ + IA
Sbjct: 80 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATK------RSGTIAF 133
Query: 201 QKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNL 260
+YHG T +L+G + + H +R +P ++
Sbjct: 134 SGAYHGRTHYTLALTGKVNPYSAG-------MGLMPGHVYRALYPCPLHGISEDDAIASI 186
Query: 261 EDLILKEG-PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGR 319
+ + PE IAA + EPV G GG + ++++A+ ++ I+ IADEV GR
Sbjct: 187 HRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGR 246
Query: 320 LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYS 379
GT+F ++ + PDL +FAK+++ + P+ + EV + + G TY+
Sbjct: 247 TGTLFAMEQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAVA-------PGGLGGTYA 298
Query: 380 GHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDG-VKAFSDSPIIGEIRGTGLILGTEF 438
G+P++C A+E LK++++ N++++ N + K +DG + P IG++RG G ++ E
Sbjct: 299 GNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIEL 358
Query: 439 ADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN---IMMSPPFIMSPEEVDELISK 495
++ N+ P+ + A A+ G+++ G + + P + ++ + +
Sbjct: 359 FEDGDHNK---PDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEI 415
Query: 496 YGKALKATEE 505
+ ++
Sbjct: 416 ISQCFDEAKQ 425
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 264 bits (675), Expect = 2e-84
Identities = 103/420 (24%), Positives = 177/420 (42%), Gaps = 53/420 (12%)
Query: 82 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 141
H L+I + +G+ V+D G +Y+D + G LG P +V A Q TL
Sbjct: 19 HDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTL-- 76
Query: 142 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 201
P L ++ +VF NSG+EAN+ +K + +KKF+A
Sbjct: 77 -PTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTG------RKKFVAAM 129
Query: 202 KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLE 261
+ + G T+ + S++ P + F P V + Y N++E
Sbjct: 130 RGFSGRTMGSLSVTWEPKYREPF---LPLVEPVEFIPY------------------NDVE 168
Query: 262 DLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG 321
L + E AA I EPV G GGV P + + + ++ L I DE+ GR G
Sbjct: 169 ALK-RAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG 227
Query: 322 TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGH 381
F + + I PD+++ AKAL A++ + HG T+ G+
Sbjct: 228 KRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPK--------GGHGTTFGGN 279
Query: 382 PVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADN 441
P++ A + A++ + + E+ ++ P F + ++A SP I E+RG GL++G E +
Sbjct: 280 PLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLELKEK 338
Query: 442 KSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSPEEVDELISKYGKAL 500
+P Y ++H +L +G I PP ++ E+++ ++ L
Sbjct: 339 AAP------------YIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 386
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 237 bits (606), Expect = 1e-73
Identities = 109/433 (25%), Positives = 199/433 (45%), Gaps = 28/433 (6%)
Query: 71 PFTAGWQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLN 130
PFT+ V+P + +EG + +G++ +D ++ W G + P+L AA +Q++
Sbjct: 16 PFTSMTSPLPVYP--VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQID 73
Query: 131 TLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALG 190
+ + F T P+++L ++L+ T + VF +SGS A + +K+ Y A
Sbjct: 74 AMS-HVMFGGITHAPAIELCRKLV-AMTPQPLECVFLADSGSVAVEVAMKMALQYWQAK- 130
Query: 191 RPNKKKFIARQKSYHGSTLIAASLSGLPALHQK-FDLPAPFVLHTDCPHYWRYAHPGETE 249
+++F+ + YHG T A S+ + P L P E +
Sbjct: 131 GEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERD 190
Query: 250 EEYSTRLANNLEDLILKEGPETIAAFIAEPVI-GAGGVIPPPATYFEKVQAVVKKYDILF 308
R ++ IAA I EP++ GAGG+ + ++++ + + IL
Sbjct: 191 MVGFAR--------LMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILL 242
Query: 309 IADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNT 368
IADE+ FGR G +F C+ I PD++ KAL+ M + A L + EV+E I +
Sbjct: 243 IADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGE-- 300
Query: 369 LGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIR 428
G F HG T+ G+P++CA A +L I + + +QV I + ++ + D+ ++ ++R
Sbjct: 301 AGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVR 360
Query: 429 GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEE 488
G I E + A + G+ +R G I + PP+I+ P++
Sbjct: 361 VLGAIGVVETTHPVN-----------MAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQ 409
Query: 489 VDELISKYGKALK 501
+ L + +A++
Sbjct: 410 LQRLTAAVNRAVQ 422
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 236 bits (603), Expect = 2e-73
Identities = 81/432 (18%), Positives = 165/432 (38%), Gaps = 38/432 (8%)
Query: 76 WQSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFY 135
++S P+V ++ + +Y +DV+G +Y+D + G + P ++ A + +
Sbjct: 28 FKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSF 87
Query: 136 HSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKK 195
+ LA+ + + + V F NSG+EA ++L+ Y +
Sbjct: 88 GAPCA----LENVLAEMVNDAV--PSIEMVRFVNSGTEACMAVLRLMRAYT------GRD 135
Query: 196 KFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTR 255
K I + YHG + +G +P V + +
Sbjct: 136 KIIKFEGCYHGHADMFLVKAGSGVATLGLP-SSPGVPKKTTANTLTTPY----------- 183
Query: 256 LANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEV 313
N+LE + + E P IA I EP++G G I P A + E ++ + ++D L + DEV
Sbjct: 184 --NDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEV 241
Query: 314 ICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFS 373
+ F +K+ + PDL + K + A E+ +++ G
Sbjct: 242 MTGFRI-AYGGVQEKFGVTPDLTTLGKIIGGGLPVG-AYGGKREIMQLVAPA----GPMY 295
Query: 374 HGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKA-FSDSPIIGEIRGTGL 432
T SG+P++ I+ L++ ++ E +++I + DG+ A ++
Sbjct: 296 QAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSG 355
Query: 433 ILGTEFADNKSPN--EPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVD 490
+ G F + N + + + F + G+ + S + E++D
Sbjct: 356 MFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGF-TSLAHTEEDID 414
Query: 491 ELISKYGKALKA 502
++ + A
Sbjct: 415 ATLAAARTVMSA 426
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 221 bits (562), Expect = 3e-67
Identities = 102/428 (23%), Positives = 186/428 (43%), Gaps = 26/428 (6%)
Query: 82 HPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNR 141
P++IE+++GS+VYD +G+ LD +G LG P +V+ L H F
Sbjct: 23 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLD--HLFSEM 80
Query: 142 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 201
++P +DLA L + T + + ++G+E+N+ +++ K + +
Sbjct: 81 LSRPVVDLATRLANI-TPPGLDRALLLSTGAESNEAAIRMAKLV------TGKYEIVGFA 133
Query: 202 KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLE 261
+S+HG T AAS + +K PA + +
Sbjct: 134 QSWHGMTGAAASATYSA--GRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAF 191
Query: 262 DLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLG 321
DLI ++ +AAFIAEP++ +GG+I P Y ++ + +L I DE GR G
Sbjct: 192 DLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG 251
Query: 322 TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGH 381
TMF C + + PD+++ +K L + + + + T+
Sbjct: 252 TMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHE------LGYLFYTTHVSD 305
Query: 382 PVSCAVAIEALKIYKERNIVEQVNKIAPKFQDG-VKAFSDSPIIGEIRGTGLILGTEFAD 440
P+ AV + L + + +V + N + + + G + IG++RG GL+LG E
Sbjct: 306 PLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVK 365
Query: 441 NKSPNEPFPPEWGIGAYFGAQCEKHGMLVRV-----SGDNIMMSPPFIMSPEEVDELISK 495
++ EP G+GA +C G+ + + G ++PP +S +E+D +S
Sbjct: 366 DRRTKEPA---DGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSL 422
Query: 496 YGKALKAT 503
G+A++
Sbjct: 423 LGQAIERA 430
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 194 bits (494), Expect = 4e-57
Identities = 73/448 (16%), Positives = 145/448 (32%), Gaps = 53/448 (11%)
Query: 83 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRT 142
E+S G+Y+ DV+G + LD + + +G S P LV N F +
Sbjct: 36 FCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI 95
Query: 143 TKPSLDLAK--ELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPN------- 193
P + K E L M+++ GS +N+ K ++ + + R
Sbjct: 96 LPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEE 155
Query: 194 -------------KKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYW 240
++ ++HG T+ + + A+H+ + + +
Sbjct: 156 LETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKY 215
Query: 241 RYAHPGETEEEYSTRLANNLEDL--ILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQ 298
+ ++ R +EDL ++ +T+A I EP+ GG +F K++
Sbjct: 216 PLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLR 275
Query: 299 AVVKKYDILFIADEVICAFGRLG--TMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSP 356
+ +K+ F+ DEV G G D+++F+K + +
Sbjct: 276 DISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFF-------- 327
Query: 357 EVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVK 416
+ + T+ G P + E + I K +++ G+
Sbjct: 328 -----HKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLL 382
Query: 417 AFSD--SPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGD 474
I +RG G + D I + G+++ GD
Sbjct: 383 DLQARYPQFISRVRGRGTFCSFDTPDES-----------IRNKLISIARNKGVMLGGCGD 431
Query: 475 N-IMMSPPFIMSPEEVDELISKYGKALK 501
I P + ++ + L
Sbjct: 432 KSIRFRPTLVFRDHHAHLFLNIFSDILA 459
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 118 bits (297), Expect = 2e-29
Identities = 55/393 (13%), Positives = 116/393 (29%), Gaps = 53/393 (13%)
Query: 149 LAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGST 208
LA+ + +F T+ G A + ++ ++ K +A + +T
Sbjct: 79 LAESVKNIF---GYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTT 135
Query: 209 LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG 268
+ ++G ++ T + ++ LE I + G
Sbjct: 136 QGHSQINGCTVR----NVYIKEAFDTGVRYDFKGNFD-----------LEGLERGIEEVG 180
Query: 269 PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA------FGRLGT 322
P + +A + G P + + ++ KKYDI + D A R
Sbjct: 181 PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAE 240
Query: 323 MFGCDKYSIKPDLVSFAKALSSA-----YMPIGAILV--SPEVSEVIHSQSNTLGSFSHG 375
I + +A L+ + +P+G +L +V
Sbjct: 241 YKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGF 300
Query: 376 FTYSGHPVSCAVAIEA-LKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLIL 434
TY G + L + + DG++ + + G +
Sbjct: 301 PTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI--GVVCQQAGGHAAFV 358
Query: 435 GTEFADNKSPNEPFPPEWG--------------IGAYFGAQCEKHGMLVRVSGDNIMMSP 480
P + FP + IG++ + K G + + + ++
Sbjct: 359 DAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTI 418
Query: 481 P-FIMSPEEVDELISKYGKALKATEERVKELKS 512
P + +D +I +A K +E +K
Sbjct: 419 PRATYTQTHMDFII----EAFKHVKENAANIKG 447
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 109 bits (273), Expect = 2e-26
Identities = 53/394 (13%), Positives = 119/394 (30%), Gaps = 57/394 (14%)
Query: 149 LAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGST 208
L + E+F + + G A + ++ Y G+ FI+ +H T
Sbjct: 80 LKDKAKELF---NYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISN---FHFDT 133
Query: 209 LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG 268
A ++ ++ W+ L++ I + G
Sbjct: 134 TAAHVELNGCKAI---NIVTEKAFDSETYDDWKGDFD-----------IKKLKENIAQHG 179
Query: 269 PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICA------FGRLGT 322
+ I A ++ + G P + ++V + K++ I + D R
Sbjct: 180 ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPK 239
Query: 323 MFGCDKYSIKPDLVSFAKALSSA-----YMPIGAILVSPEVSEVIHSQSNTLGSFSHGFT 377
+ D+ +A AL+ + + IG ++ + E+ T
Sbjct: 240 YKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVT 299
Query: 378 YSGHPVSCAVAI-----EALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGL 432
Y G A+ E + + QV + + ++ PI G +
Sbjct: 300 YGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGI-----PIQYPTGGHAV 354
Query: 433 ILGTEFADNKSPNEPFPPEWG--------------IGAYFGAQCEKHGMLVRVSGDNIMM 478
+ + + P + FP + IG++ + G + + +
Sbjct: 355 FVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRL 414
Query: 479 S-PPFIMSPEEVDELISKYGKALKATEERVKELK 511
+ + + + +D + LK +K L+
Sbjct: 415 TIARRVYTNDHMDYIADAL-IGLKEKFATLKGLE 447
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 50.6 bits (119), Expect = 2e-07
Identities = 40/389 (10%), Positives = 85/389 (21%), Gaps = 61/389 (15%)
Query: 115 GGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEA 174
G+ P + A + + T + + + ++ E+F + +VF +G+ A
Sbjct: 13 AGASPEVAQALVKHSSG----QAGPYGTDELTAQVKRKFCEIF--ERDVEVFLVPTGTAA 66
Query: 175 NDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHT 234
N + + S L A +
Sbjct: 67 N------ALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVR 120
Query: 235 DCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYF 294
T
Sbjct: 121 LRERTREKVGD-----------------------VHTTQPACVSITQATEVGSIYTLDEI 157
Query: 295 EKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILV 354
E + V K + D A + + + K + + + + +
Sbjct: 158 EAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLA----- 212
Query: 355 SPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDG 414
E + ++ T S+ ++ + + + K Q
Sbjct: 213 -AEAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRL 271
Query: 415 VKAFSDSPIIGEIRGT-GLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVS- 472
+ + + GT IL K G
Sbjct: 272 AQGLEGLGGVEVLGGTEANILFCRLDSAMI----------------DALLKAGFGFYHDR 315
Query: 473 -GDN-IMMSPPFIMSPEEVDELISKYGKA 499
G N + F + E+VD L+++ A
Sbjct: 316 WGPNVVRFVTSFATTAEDVDHLLNQVRLA 344
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 50.5 bits (119), Expect = 2e-07
Identities = 40/354 (11%), Positives = 89/354 (25%), Gaps = 53/354 (14%)
Query: 149 LAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGST 208
L + E F F SG+ N + + G
Sbjct: 39 LERLAAETF---GKEAALFVPSGTMGNQVSIMAH--------------------TQRGDE 75
Query: 209 LIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEG 268
+I + S + V+ P P + + R +
Sbjct: 76 VILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPR------- 128
Query: 269 PETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDK 328
+ E G P +++ + K++ I D + + +
Sbjct: 129 ---TSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKE 185
Query: 329 YSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVA 388
Y+ D V F + ++ + E A
Sbjct: 186 YAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERAR-------KARKMLGGGMRQAGVLAA 238
Query: 389 IEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPF 448
+ + K + +++ ++ A +K S +++ +IL
Sbjct: 239 AGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILR------------T 286
Query: 449 PPEWGIGAYFGAQCEKHGMLVRVSGDN-IMMSPPFIMSPEEVDELISKYGKALK 501
F G+L D I + +S +++E ++ + K +
Sbjct: 287 DNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFR 340
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 46.7 bits (110), Expect = 4e-06
Identities = 64/441 (14%), Positives = 130/441 (29%), Gaps = 99/441 (22%)
Query: 85 VIEKSEGSYVYDVNGKKYLDSLAGLWCTA--LG-GSEPRLVAAATAQLNTLPFYHSFWNR 141
+I ++ + + +G ++ +C LG + P L+AAA A +++ F +
Sbjct: 30 IITSAQQADITVADGSHVIN-----FCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRF 84
Query: 142 TTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQ 201
D+ +L F+ +
Sbjct: 85 I-----------------------------CGTQDSHKELEQKLA---------AFLGME 106
Query: 202 KSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLE 261
+ S+ A+ L D L+ + + +
Sbjct: 107 DAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEA 166
Query: 262 DLI-LKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADE-----VIC 315
L +E + V GVI + V + KYD L + D+ +
Sbjct: 167 RLKEAREAGARHVLIATDGVFSMDGVIA----NLKGVCDLADKYDALVMVDDSHAVGFVG 222
Query: 316 AFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHG 375
GR G+ CD + D+++ + G EV E + +S +
Sbjct: 223 ENGR-GSHEYCDVMG-RVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSR-----PYL 275
Query: 376 FTYSGHP-VSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAF------SDSPIIGEIR 428
F+ S P + A + + +++ A +F++ + A +D II
Sbjct: 276 FSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTLAGADHAII---- 331
Query: 429 GTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSG--------DNIMMSP 480
++LG D + F + +K G+ V I
Sbjct: 332 --PVMLG----DAVVAQK-----------FARELQKEGIYVTGFFYPVVPKGQARIRTQM 374
Query: 481 PFIMSPEEVDELISKYGKALK 501
+PE++ + + + K
Sbjct: 375 SAAHTPEQITRAVEAFTRIGK 395
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 43.0 bits (100), Expect = 6e-05
Identities = 49/379 (12%), Positives = 86/379 (22%), Gaps = 54/379 (14%)
Query: 148 DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGS 207
L ++++ +A F + + T L + RP K I + S
Sbjct: 98 SLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHK----RPKAKYIIW-PRIDQKS 152
Query: 208 TLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKE 267
+ +G + + L TD +E I +
Sbjct: 153 CFKSMVTAGFEPVVIENV-LEGDELRTDLKA---------------------VEAKIQEL 190
Query: 268 GPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGT---MF 324
GPE I + A V E++ + YDI + +
Sbjct: 191 GPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQ 246
Query: 325 GCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTY------ 378
G I + S K + + I S S
Sbjct: 247 GARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLS 306
Query: 379 ---SGHPVSCAVAIEALKIYKER------NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRG 429
SG+ E + E++ + +
Sbjct: 307 LGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAV 366
Query: 430 TGLI--LGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPE 487
T L L T + G F + + M +
Sbjct: 367 TQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADN---YPCAYLNAAAAIGMKMQ 423
Query: 488 EVDELISKYGKALKATEER 506
+VD I + K L +
Sbjct: 424 DVDLFIKRLDKCLNIVRKE 442
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 39.9 bits (91), Expect = 5e-04
Identities = 41/384 (10%), Positives = 83/384 (21%), Gaps = 60/384 (15%)
Query: 114 LGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSE 173
G P+++ A L+ A V F + G++
Sbjct: 9 SVGMHPKILDLMARDNM-----TQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQ 63
Query: 174 ANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 233
N L A L
Sbjct: 64 TNLIACSLALRPWEA--------------------------------VIATQLGHISTHE 91
Query: 234 TDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATY 293
T + + R+A+ L + +
Sbjct: 92 TGAIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQE 151
Query: 294 FEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAIL 353
E + A K++ + D A + I F + A G L
Sbjct: 152 LEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEAL 211
Query: 354 VSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQD 413
+ + +++ G + + +K + NK+A +
Sbjct: 212 IILNDALKPNARHLI---KQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKA 268
Query: 414 GVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFP--PEWGIGAYFGAQCEKHGMLVRV 471
G++ G A + N+ FP I A + + +
Sbjct: 269 GLE----------------ACGIRLAWPSASNQLFPILENTMI-AELNNDFDMYTVEPLK 311
Query: 472 SGDN-IMMSPPFIMSPEEVDELIS 494
G + + + +E +
Sbjct: 312 DGTCIMRLCTSWATEEKECHRFVE 335
>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus
thermophilus [TaxId: 274]}
Length = 382
Score = 37.8 bits (87), Expect = 0.002
Identities = 28/162 (17%), Positives = 46/162 (28%), Gaps = 6/162 (3%)
Query: 227 PAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGV 286
P ET E + E + P T A + P G V
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVP--DPERVRRAITPRTKALVVNSPNNPTGAV 180
Query: 287 IPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLV--SFAKALSS 344
P E + + ++D ++DE+ G F + + + L AKA +
Sbjct: 181 YPKE--VLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAM 238
Query: 345 AYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCA 386
IG EV + + S S + +
Sbjct: 239 TGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALT 280
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 30.2 bits (66), Expect = 0.61
Identities = 44/392 (11%), Positives = 102/392 (26%), Gaps = 53/392 (13%)
Query: 120 RLVAAATAQLNTLPFYHSFWNRTTKPSLDLAK-----ELLEMFTAS--KMAKVFFTNSGS 172
+L A L +S + T LD K + + TN
Sbjct: 13 KLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAR 72
Query: 173 EANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVL 232
EA + +L + + + Y + L
Sbjct: 73 EAKFAVMH-------SLAKKDAWVVMDENCHYSSYVAAERA-------------GLNIAL 112
Query: 233 HTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPVIGAGGVIPPPAT 292
+ P + L L P+ G +P
Sbjct: 113 VPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDG-----------NYGNLPDVKK 161
Query: 293 YFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAI 352
+ +YD+ + + ++ I +A PIG +
Sbjct: 162 IAKVCS----EYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSM----AASGPIGVM 213
Query: 353 LVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNI--VEQVNKIAPK 410
+ E +E++ +S + + + + A + I ++ + A +
Sbjct: 214 GMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARR 273
Query: 411 FQDGVKAFSDSPIIGEIRGTGLILGTEFADNKSPNEPFPPEWGIGAYFGAQCEKHGML-V 469
F ++ + L+ F + E G + + + + +
Sbjct: 274 FAAEMEKLGIKQLGDNPHNHDLM----FFHAEVLYEISKKAKGGRFFLYRELKSRKIHGI 329
Query: 470 RVSGDNIMMSPPFIMSPEEVDELISKYGKALK 501
+ + +S EEVD +++ + + ++
Sbjct: 330 KPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIE 361
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 29.8 bits (66), Expect = 0.81
Identities = 45/259 (17%), Positives = 93/259 (35%), Gaps = 39/259 (15%)
Query: 259 NLEDLILKEGPETIAAFIAEPVIGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFG 318
N+++L +T A I P G V+ E++ V ++D++ I+DEV F
Sbjct: 148 NVDELKKYVTDKTRALIINSPCNPTGAVLTKKD--LEEIADFVVEHDLIVISDEVYEHFI 205
Query: 319 R-------LGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGS 371
+ ++ G + +I + F+K + +G + +
Sbjct: 206 YDDARHYSIASLDGMFERTIT--VNGFSKTFAMTGWRLGFV-------AAPSWIIERMVK 256
Query: 372 FSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTG 431
F A +ALK + VE++ K + + V + + ++ G
Sbjct: 257 FQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKG 316
Query: 432 -LILGTEFADNKSPNEPFPP----EWGI----GAYFGAQCEKHGMLVRVSGDNIMMSPPF 482
+ D ++ F E + G+ FG E + VR+S +
Sbjct: 317 AFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGY---VRIS---------Y 364
Query: 483 IMSPEEVDELISKYGKALK 501
+ E+++E + + + LK
Sbjct: 365 ATAYEKLEEAMDRMERVLK 383
>d2nxya1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency
virus type 1 [TaxId: 11676]}
Length = 316
Score = 28.9 bits (65), Expect = 1.6
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 416 KAFSDSPIIGEIRG----TGLILGTEFADNKSPNEPFPP 450
KA PI G+IR TGL+L + ++ + +E F P
Sbjct: 257 KAMYAPPISGQIRCSSNITGLLLTRDGGNSNNESEIFRP 295
>d1jlia_ a.26.1.2 (A:) Interleukin-3 (IL-3) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 112
Score = 27.6 bits (61), Expect = 1.7
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 149 LAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGST 208
+ E++ + N SE D + L PN F+ K ++
Sbjct: 6 MIDEIIHHLKRPPNPLLDPNNLNSEDMDILM------ERNLRTPNLLAFVRAVKHLENAS 59
Query: 209 LIAASLSGLP 218
I + L L
Sbjct: 60 AIESILKNLL 69
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 264
Score = 28.4 bits (63), Expect = 2.0
Identities = 12/86 (13%), Positives = 21/86 (24%), Gaps = 2/86 (2%)
Query: 206 GSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYS-TRLANNLEDLI 264
GS + L + +++H + N
Sbjct: 103 GSATVVDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNA 162
Query: 265 LKEGPETIAAFIAEPVIGAGGVIPPP 290
L P+ I + P + G PP
Sbjct: 163 LMHSPKDIDG-LIIPGLCTGYAGVPP 187
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides
thetaiotaomicron [TaxId: 818]}
Length = 154
Score = 27.8 bits (61), Expect = 2.3
Identities = 10/82 (12%), Positives = 22/82 (26%), Gaps = 7/82 (8%)
Query: 227 PAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLI--LKEGPETIAAFIAEPVIGAG 284
+V + H G Y + + + + A + P IG G
Sbjct: 71 NKLYVANMIGQHGIYKDSKGLPPIRY-----DAVRQCLKEVALFTIAHKASVHMPRIGCG 125
Query: 285 GVIPPPATYFEKVQAVVKKYDI 306
+ ++ + +I
Sbjct: 126 LAGGKWELMEQIIKEELITKEI 147
>d1el6a_ d.182.1.1 (A:) Baseplate structural protein gp11
{Bacteriophage T4 [TaxId: 10665]}
Length = 208
Score = 27.9 bits (62), Expect = 2.6
Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 10/117 (8%)
Query: 345 AYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEAL----KIYKERNI 400
+ +G I+ + +FS T P + +
Sbjct: 52 SIKDVGTIITNKTGVSPEGVSQTDYWAFSGTVTDDSLPPGSPITVLVFGLPVSATTGMTA 111
Query: 401 VEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGL---ILGTEFADNKSPNEPFPPEWGI 454
+E V K+ Q+ A + I + L + DN+ +GI
Sbjct: 112 IEFVAKVRVALQE---AIASFTAINSYKDHPTDGSKLEVTYLDNQKHVLSTYSTYGI 165
>d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 161
Score = 26.6 bits (58), Expect = 5.2
Identities = 12/90 (13%), Positives = 21/90 (23%), Gaps = 3/90 (3%)
Query: 171 GSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFD---LP 227
+ D + + + K G L AA P
Sbjct: 53 STPIGDAVEARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAP 112
Query: 228 APFVLHTDCPHYWRYAHPGETEEEYSTRLA 257
+ P + + P T ++ R A
Sbjct: 113 MTLNVKNPDPIFDKRFMPLTTSKKMLVRTA 142
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 26.9 bits (59), Expect = 5.4
Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 458 FGAQCEKHGMLVRVSGDNIMMS------PPF-IMSPEEVDELISKYGKALKATEER 506
G + + +NI + F +SPEE+ + + + ++ ++
Sbjct: 188 LGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 243
>d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana
[TaxId: 5665]}
Length = 249
Score = 26.7 bits (58), Expect = 5.6
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 286 VIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCD 327
V+ P + VQA ++ + A I G
Sbjct: 39 VVAPTFVHIPLVQAKLRNPKYVISAQNAIAKSGAFTGEVSMP 80
>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli
[TaxId: 562]}
Length = 172
Score = 26.7 bits (58), Expect = 5.6
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 7/84 (8%)
Query: 221 HQKFDLPAPFVLHTDCPHYWRYAHPGETEEEYSTRLANNLEDLILKEGPETIAAFIAEPV 280
DLPA V+HT P + + E++ N L+ ++A P
Sbjct: 66 TLAGDLPAKAVVHTVGPVWR---GGEQNEDQLLQDAYLNSLRLVAANSYTSVAF----PA 118
Query: 281 IGAGGVIPPPATYFEKVQAVVKKY 304
I G P A E V ++
Sbjct: 119 ISTGVYGYPRAAAAEIAVKTVSEF 142
>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase
{Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}
Length = 388
Score = 26.6 bits (57), Expect = 7.7
Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 7/53 (13%)
Query: 451 EWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALKAT 503
+ + G RV + +++ + + ++LKAT
Sbjct: 337 NFSLEVQGGLGPTFGKA-WRVG------IMGECSTVQKIQFYLYGFKESLKAT 382
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 26.7 bits (58), Expect = 8.3
Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 28/113 (24%)
Query: 399 NIVEQVNKIAPKFQDGVKAFSDSPIIGEIRGTGLILGTE----------FADNKSPNEPF 448
+ Q KI Q+G ++PII I G G +G + A K+
Sbjct: 6 VVPAQGKKI--TLQNGKLNVPENPIIPYIEGDG--IGVDVTPAMLKVVDAAVEKAYKGER 61
Query: 449 PPEWGIGAYFGAQCEKHGMLVRVSGDNIMMSPPFIMSPEEVDELISKYGKALK 501
W + + G ++ + P E +LI +Y A+K
Sbjct: 62 KISWMEIYTGEKSTQVY-------GQDVWL-------PAETLDLIREYRVAIK 100
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 26.3 bits (57), Expect = 8.5
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 472 SGDNIMMS-----PPFIMSPEEVDELISKYGK 498
SGD I + + SPEEV+++++K+ K
Sbjct: 171 SGDGIDVVKITEDEFYQYSPEEVEQILAKFRK 202
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 26.1 bits (57), Expect = 8.9
Identities = 9/41 (21%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 472 SGDNIMMS-----PPF-IMSPEEVDELISKYGKALKATEER 506
G NI ++ I++PEE+++ +++ K + E++
Sbjct: 201 GGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENEKK 241
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.393
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,904,383
Number of extensions: 90364
Number of successful extensions: 385
Number of sequences better than 10.0: 1
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 33
Length of query: 514
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 425
Effective length of database: 1,185,626
Effective search space: 503891050
Effective search space used: 503891050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.7 bits)