Query 010251
Match_columns 514
No_of_seqs 222 out of 2050
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 22:48:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00165 aspartyl protease; Pr 100.0 6E-66 1.3E-70 547.4 40.9 368 29-514 63-447 (482)
2 cd05490 Cathepsin_D2 Cathepsin 100.0 1.3E-62 2.7E-67 503.0 38.4 324 83-512 1-325 (325)
3 cd06098 phytepsin Phytepsin, a 100.0 9.6E-63 2.1E-67 502.1 36.3 317 79-512 1-317 (317)
4 cd05487 renin_like Renin stimu 100.0 1.5E-61 3.2E-66 495.3 39.5 325 81-513 1-326 (326)
5 cd05486 Cathespin_E Cathepsin 100.0 6.5E-62 1.4E-66 495.9 36.0 316 89-512 1-316 (316)
6 cd05485 Cathepsin_D_like Cathe 100.0 1.5E-60 3.3E-65 488.2 38.7 327 79-512 2-329 (329)
7 cd05478 pepsin_A Pepsin A, asp 100.0 1.8E-60 3.8E-65 485.5 37.8 317 79-512 1-317 (317)
8 cd05488 Proteinase_A_fungi Fun 100.0 3.7E-60 8.1E-65 483.7 37.8 320 79-512 1-320 (320)
9 cd05477 gastricsin Gastricsins 100.0 7.9E-60 1.7E-64 481.0 38.6 317 86-513 1-318 (318)
10 PTZ00147 plasmepsin-1; Provisi 100.0 5.6E-59 1.2E-63 490.5 39.5 323 75-514 126-450 (453)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 5.6E-58 1.2E-62 482.1 39.2 324 74-514 124-449 (450)
12 PF00026 Asp: Eukaryotic aspar 100.0 2.5E-55 5.3E-60 446.4 30.4 316 88-513 1-317 (317)
13 cd06097 Aspergillopepsin_like 100.0 1.3E-51 2.9E-56 412.6 31.1 219 89-315 1-225 (278)
14 KOG1339 Aspartyl protease [Pos 100.0 1.1E-50 2.4E-55 425.3 32.1 320 77-513 35-392 (398)
15 cd05473 beta_secretase_like Be 100.0 1.3E-50 2.8E-55 420.5 32.2 316 87-514 2-346 (364)
16 PLN03146 aspartyl protease fam 100.0 3.2E-49 7E-54 416.9 33.8 304 85-513 81-426 (431)
17 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.8E-49 3.9E-54 406.0 30.3 283 87-514 2-324 (326)
18 cd05474 SAP_like SAPs, pepsin- 100.0 5.3E-49 1.1E-53 396.7 33.3 278 88-513 2-295 (295)
19 cd05472 cnd41_like Chloroplast 100.0 1.3E-48 2.8E-53 394.9 29.7 287 88-513 1-297 (299)
20 cd05471 pepsin_like Pepsin-lik 100.0 4.2E-46 9E-51 372.2 34.4 227 89-317 1-231 (283)
21 cd05476 pepsin_A_like_plant Ch 100.0 2.5E-45 5.3E-50 364.8 27.9 248 88-514 1-264 (265)
22 cd05475 nucellin_like Nucellin 100.0 4.8E-45 1E-49 364.2 28.6 258 87-514 1-272 (273)
23 cd05489 xylanase_inhibitor_I_l 100.0 1E-41 2.3E-46 352.3 28.3 313 95-513 2-361 (362)
24 cd05470 pepsin_retropepsin_lik 99.9 5.3E-22 1.1E-26 170.1 13.0 108 91-199 1-109 (109)
25 PF14543 TAXi_N: Xylanase inhi 99.9 1.2E-20 2.6E-25 173.8 16.1 136 89-247 1-164 (164)
26 PF14541 TAXi_C: Xylanase inhi 99.8 2.3E-18 5E-23 158.3 14.5 150 267-512 1-161 (161)
27 cd05483 retropepsin_like_bacte 97.9 3.7E-05 8.1E-10 63.4 7.0 91 88-200 2-93 (96)
28 PF05184 SapB_1: Saposin-like 97.7 2.9E-05 6.3E-10 53.3 2.4 38 386-423 2-39 (39)
29 TIGR02281 clan_AA_DTGA clan AA 97.2 0.0023 5E-08 55.8 9.0 101 79-201 2-103 (121)
30 PF13650 Asp_protease_2: Aspar 96.5 0.015 3.3E-07 47.0 8.4 88 91-200 1-89 (90)
31 PF11925 DUF3443: Protein of u 95.7 0.12 2.7E-06 52.7 11.7 196 90-305 25-272 (370)
32 cd05479 RP_DDI RP_DDI; retrope 95.3 0.11 2.4E-06 45.3 8.7 90 86-200 14-106 (124)
33 COG3577 Predicted aspartyl pro 94.7 0.27 5.9E-06 46.1 9.8 105 75-201 92-197 (215)
34 PF03489 SapB_2: Saposin-like 94.4 0.025 5.5E-07 37.6 1.7 34 322-355 2-35 (35)
35 cd05484 retropepsin_like_LTR_2 94.0 0.25 5.3E-06 40.4 7.3 75 89-181 1-78 (91)
36 cd05479 RP_DDI RP_DDI; retrope 92.5 0.7 1.5E-05 40.2 8.2 26 485-510 99-124 (124)
37 PF08284 RVP_2: Retroviral asp 91.8 0.58 1.3E-05 41.5 6.9 27 486-512 105-131 (135)
38 cd06095 RP_RTVL_H_like Retrope 91.7 0.99 2.1E-05 36.5 7.7 81 92-201 2-84 (86)
39 TIGR02281 clan_AA_DTGA clan AA 90.2 4.1 8.9E-05 35.3 10.6 37 264-310 8-44 (121)
40 KOG1340 Prosaposin [Lipid tran 89.5 0.53 1.1E-05 45.1 4.7 96 323-435 78-174 (218)
41 smart00741 SapB Saposin (B) Do 88.5 0.41 8.8E-06 37.0 2.8 37 387-423 2-38 (76)
42 PF07966 A1_Propeptide: A1 Pro 87.3 0.33 7.1E-06 30.9 1.2 24 30-53 1-24 (29)
43 TIGR03698 clan_AA_DTGF clan AA 84.2 4.8 0.00011 34.1 7.3 24 485-508 84-107 (107)
44 PF13975 gag-asp_proteas: gag- 84.0 1.7 3.8E-05 33.9 4.2 34 85-120 5-38 (72)
45 PF00077 RVP: Retroviral aspar 74.2 3.8 8.3E-05 33.7 3.5 29 90-120 7-35 (100)
46 PF12384 Peptidase_A2B: Ty3 tr 72.8 7.8 0.00017 35.3 5.2 27 286-312 43-69 (177)
47 PF13650 Asp_protease_2: Aspar 72.4 5 0.00011 31.9 3.7 29 275-310 3-31 (90)
48 PF13975 gag-asp_proteas: gag- 67.0 9.9 0.00021 29.5 4.2 30 274-310 12-41 (72)
49 PF09668 Asp_protease: Asparty 65.7 14 0.0003 32.3 5.2 79 87-181 23-103 (124)
50 PF07172 GRP: Glycine rich pro 64.5 4.6 0.0001 33.5 1.9 24 1-26 1-24 (95)
51 cd05484 retropepsin_like_LTR_2 62.0 11 0.00024 30.5 3.8 30 274-310 4-33 (91)
52 cd05483 retropepsin_like_bacte 60.7 13 0.00028 29.8 4.0 30 274-310 6-35 (96)
53 cd05482 HIV_retropepsin_like R 59.0 12 0.00026 30.5 3.4 26 92-119 2-27 (87)
54 smart00741 SapB Saposin (B) Do 58.3 6.9 0.00015 29.9 1.9 36 320-355 41-76 (76)
55 PF08284 RVP_2: Retroviral asp 55.9 69 0.0015 28.3 8.0 29 87-117 20-48 (135)
56 cd06095 RP_RTVL_H_like Retrope 54.6 15 0.00032 29.6 3.3 29 275-310 3-31 (86)
57 cd06094 RP_Saci_like RP_Saci_l 39.3 1.9E+02 0.004 23.8 7.3 64 100-181 8-73 (89)
58 COG5550 Predicted aspartyl pro 37.0 21 0.00045 31.0 1.6 21 290-310 28-49 (125)
59 PF00077 RVP: Retroviral aspar 36.0 29 0.00062 28.4 2.3 27 274-307 9-35 (100)
60 KOG1340 Prosaposin [Lipid tran 35.8 20 0.00042 34.5 1.4 44 314-357 162-205 (218)
61 COG3577 Predicted aspartyl pro 34.3 79 0.0017 30.1 5.1 36 265-310 103-138 (215)
62 PF12384 Peptidase_A2B: Ty3 tr 32.0 56 0.0012 30.0 3.5 28 90-117 34-61 (177)
63 PF09668 Asp_protease: Asparty 31.4 54 0.0012 28.6 3.3 30 274-310 28-57 (124)
64 cd05481 retropepsin_like_LTR_1 29.6 51 0.0011 27.0 2.8 23 289-311 11-33 (93)
65 cd05470 pepsin_retropepsin_lik 27.4 52 0.0011 27.1 2.5 20 286-305 9-28 (109)
66 TIGR03698 clan_AA_DTGF clan AA 27.1 67 0.0015 27.0 3.1 66 91-172 2-73 (107)
67 PRK02710 plastocyanin; Provisi 23.0 1.2E+02 0.0025 26.1 3.9 35 1-35 1-35 (119)
No 1
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=6e-66 Score=547.38 Aligned_cols=368 Identities=36% Similarity=0.686 Sum_probs=305.7
Q ss_pred ceEEEeeeeeccchhhhhccCcccchhhcccccccccccCCCCCCCCcceEeceeccCceEEEEEEEcCCCceEEEEecC
Q 010251 29 GLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDT 108 (514)
Q Consensus 29 ~~~ripL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDT 108 (514)
.++||||+|.++.++++.+.+...-..+++. .+.+.............++|.||.|.+|+++|+||||||+|+|+|||
T Consensus 63 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DT 140 (482)
T PTZ00165 63 PAHKVELHRFALLKKKRKKNSEKGYISRVLT--KHKYLETKDPNGLQYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDT 140 (482)
T ss_pred heEEeeeEEcchHHHhhhhHHHHHhhhhhhh--ccccccccccccccccceecccccCCeEEEEEEeCCCCceEEEEEeC
Confidence 5899999998777665443311000001111 00010000000013467999999999999999999999999999999
Q ss_pred CCCceeeeCCCCCCCcccccCCcccCCCCCceee--cCe---EEEEEeccceEEEEEEEEEEEECCEEecceeEEEEEec
Q 010251 109 GSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKR--NGT---SAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKE 183 (514)
Q Consensus 109 GSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~--~~~---~~~~~Yg~gs~~G~~~~D~v~igg~~v~~~~fg~~~~~ 183 (514)
||+++|||+..|. ..+|..|+.||+++|+||+. .+. .+.++|++|++.|.+++|+|++|+..++++.||++...
T Consensus 141 GSS~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~~~ 219 (482)
T PTZ00165 141 GSSNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLAIEE 219 (482)
T ss_pred CCCCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEEEec
Confidence 9999999999996 56899999999999999998 555 67899999999999999999999999999999999987
Q ss_pred ccccccccccceEEeecccccc---cCCCCchHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEEECCcCCCCc--ccceE
Q 010251 184 ASITFLAAKFDGILGLGFQEIS---IGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGGVDPDHY--KGEHT 258 (514)
Q Consensus 184 ~~~~~~~~~~~GIlGLg~~~~s---~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg~D~s~~--~g~l~ 258 (514)
.+..|....+|||||||++..+ .....|++++|++||+|++++||+||.+.. ..+|+|+|||+|+.++ .|++.
T Consensus 220 s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~--~~~G~l~fGGiD~~~~~~~g~i~ 297 (482)
T PTZ00165 220 SLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDL--NQPGSISFGSADPKYTLEGHKIW 297 (482)
T ss_pred cccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCC--CCCCEEEeCCcCHHHcCCCCceE
Confidence 6655666789999999998873 345789999999999999999999997653 2379999999999877 57899
Q ss_pred EEecccCCceEEEEceEEECCeeecccCCCceEEEcCCCCCcccCHHHHHHHHHHhccCcccccchhhHHhhhhhHHHHH
Q 010251 259 YVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEM 338 (514)
Q Consensus 259 ~~pl~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~ 338 (514)
|+|+.+.+||+|.+++|++|++.+..+..++.|++||||+++++|++++++|.+++++.
T Consensus 298 ~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~--------------------- 356 (482)
T PTZ00165 298 WFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE--------------------- 356 (482)
T ss_pred EEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc---------------------
Confidence 99999999999999999999988776667889999999999999999999999988654
Q ss_pred HHhccCcccccccCcccccCCCCcccccceeeeccCCCCCCCCCCCcccchhhhHHHHHHHHHHhhchhhHHHHhhhhcc
Q 010251 339 LIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQILNYVNQL 418 (514)
Q Consensus 339 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (514)
T Consensus 357 -------------------------------------------------------------------------------- 356 (482)
T PTZ00165 357 -------------------------------------------------------------------------------- 356 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCeeeeCCCCCCCCcEEEEECCE-----EEEeCcCcceEEec--cCccceeEeeeEecccCCCCCCeeEecH
Q 010251 419 CDRLPSPNGESAVDCDNLSSMPNVSFTIGGK-----VFDLAPNEYVLEVG--EGVAAQCISGFTAFDVAPPRGPLWILGD 491 (514)
Q Consensus 419 c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~-----~~~l~~~~y~~~~~--~~~~~~C~~~~~~~~~~~~~~~~~iLG~ 491 (514)
.+|+....+|+|+|+|+|. +|+|+|++|+++.. ......|.++|..++.+.+.++.||||+
T Consensus 357 ------------~~C~~~~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd 424 (482)
T PTZ00165 357 ------------EDCSNKDSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGN 424 (482)
T ss_pred ------------ccccccccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEch
Confidence 2788777899999999864 89999999999752 3344689999999887666778999999
Q ss_pred hhhcceEEEEECCCCeEEEEecC
Q 010251 492 VFMGRYHTVFDYGNLSIGFAEAA 514 (514)
Q Consensus 492 ~fl~~~y~vfD~~~~rIGfa~a~ 514 (514)
+|||+||++||.+++|||||+++
T Consensus 425 ~Flr~yy~VFD~~n~rIGfA~a~ 447 (482)
T PTZ00165 425 NFIRKYYSIFDRDHMMVGLVPAK 447 (482)
T ss_pred hhheeEEEEEeCCCCEEEEEeec
Confidence 99999999999999999999985
No 2
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.3e-62 Score=503.01 Aligned_cols=324 Identities=53% Similarity=1.002 Sum_probs=286.2
Q ss_pred eccCceEEEEEEEcCCCceEEEEecCCCCceeeeCCCCCC-CcccccCCcccCCCCCceeecCeEEEEEeccceEEEEEE
Q 010251 83 NFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYF-SVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFS 161 (514)
Q Consensus 83 n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~G~~~ 161 (514)
|+.|.+|+++|.||||||+|+|++||||+++||+|..|.. ...|..++.|+|++|+||+..++.+.+.|++|++.|.++
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~ 80 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLS 80 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEe
Confidence 5678999999999999999999999999999999999953 247888899999999999999999999999999999999
Q ss_pred EEEEEECCEEecceeEEEEEecccccccccccceEEeecccccccCCCCchHHHHHHcCCCCCCEEEEEecCCCCCCCCc
Q 010251 162 QDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGG 241 (514)
Q Consensus 162 ~D~v~igg~~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G 241 (514)
+|+|+||+..++++.||++....+..|....++||||||++..+.....|++++|++||.|.+++||+||.+..+...+|
T Consensus 81 ~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G 160 (325)
T cd05490 81 QDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGG 160 (325)
T ss_pred eeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCC
Confidence 99999999999999999998776544555678999999999888777889999999999999999999998754333479
Q ss_pred EEEECCcCCCCcccceEEEecccCCceEEEEceEEECCeeecccCCCceEEEcCCCCCcccCHHHHHHHHHHhccCcccc
Q 010251 242 EIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVIS 321 (514)
Q Consensus 242 ~L~fGg~D~s~~~g~l~~~pl~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l~~~i~~~~~~~ 321 (514)
+|+|||+|+++|.|++.|+|+.+..+|.|++++|.||+... .+.....++|||||+++++|.+++++|.+++++.
T Consensus 161 ~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~-~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~---- 235 (325)
T cd05490 161 ELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV---- 235 (325)
T ss_pred EEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeee-ecCCCCEEEECCCCccccCCHHHHHHHHHHhCCc----
Confidence 99999999999999999999988899999999999988643 2445678999999999999999999999988643
Q ss_pred cchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCCcccccceeeeccCCCCCCCCCCCcccchhhhHHHHHHHHH
Q 010251 322 QECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNK 401 (514)
Q Consensus 322 ~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (514)
T Consensus 236 -------------------------------------------------------------------------------- 235 (325)
T cd05490 236 -------------------------------------------------------------------------------- 235 (325)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhchhhHHHHhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceEEeccCccceeEeeeEecccCC
Q 010251 402 LRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAP 481 (514)
Q Consensus 402 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~ 481 (514)
+...+.|.++|+....+|+|+|+|+|+.|+|+|++|+++........|+++|+..+...
T Consensus 236 ---------------------~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~ 294 (325)
T cd05490 236 ---------------------PLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPP 294 (325)
T ss_pred ---------------------cccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeEEEECCCCC
Confidence 11245688999988889999999999999999999999765444468999998877655
Q ss_pred CCCCeeEecHhhhcceEEEEECCCCeEEEEe
Q 010251 482 PRGPLWILGDVFMGRYHTVFDYGNLSIGFAE 512 (514)
Q Consensus 482 ~~~~~~iLG~~fl~~~y~vfD~~~~rIGfa~ 512 (514)
+.++.||||++|||++|+|||++++|||||+
T Consensus 295 ~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 295 PAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 5567899999999999999999999999996
No 3
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=9.6e-63 Score=502.09 Aligned_cols=317 Identities=82% Similarity=1.416 Sum_probs=284.4
Q ss_pred EeceeccCceEEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeecCeEEEEEeccceEEE
Q 010251 79 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISG 158 (514)
Q Consensus 79 ~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~G 158 (514)
++|.|+.+.+|+++|+||||||+++|+|||||+++||++..|.....|..++.|++++|+|++..+..+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G 80 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISG 80 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEE
Confidence 47899999999999999999999999999999999999999964568999999999999999999999999999999999
Q ss_pred EEEEEEEEECCEEecceeEEEEEecccccccccccceEEeecccccccCCCCchHHHHHHcCCCCCCEEEEEecCCCCCC
Q 010251 159 FFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGE 238 (514)
Q Consensus 159 ~~~~D~v~igg~~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~ 238 (514)
.+++|+|++|+..++++.||++....+..|....++||||||++..+..+..|++++|++||.|++++||+||.+..+..
T Consensus 81 ~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~ 160 (317)
T cd06098 81 FFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEE 160 (317)
T ss_pred EEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCC
Confidence 99999999999999999999998776555666778999999999887777888999999999999999999998754334
Q ss_pred CCcEEEECCcCCCCcccceEEEecccCCceEEEEceEEECCeeecccCCCceEEEcCCCCCcccCHHHHHHHHHHhccCc
Q 010251 239 EGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASG 318 (514)
Q Consensus 239 ~~G~L~fGg~D~s~~~g~l~~~pl~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l~~~i~~~~ 318 (514)
..|+|+|||+|+++|.|+++|+|+...++|.|.+++|.|+++.+..+.....++|||||+++++|++++++|.
T Consensus 161 ~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~------- 233 (317)
T cd06098 161 EGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN------- 233 (317)
T ss_pred CCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh-------
Confidence 5899999999999999999999999889999999999999998766667789999999999999998765441
Q ss_pred ccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCCcccccceeeeccCCCCCCCCCCCcccchhhhHHHHHH
Q 010251 319 VISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWM 398 (514)
Q Consensus 319 ~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (514)
T Consensus 234 -------------------------------------------------------------------------------- 233 (317)
T cd06098 234 -------------------------------------------------------------------------------- 233 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhchhhHHHHhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceEEeccCccceeEeeeEecc
Q 010251 399 QNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFD 478 (514)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~ 478 (514)
|.++|+....+|+|+|+|+|+.|+|+|++|+++..++....|+++|+..+
T Consensus 234 ------------------------------~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~ 283 (317)
T cd06098 234 ------------------------------SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALD 283 (317)
T ss_pred ------------------------------ccCCccccccCCcEEEEECCEEEEEChHHeEEeecCCCCCEEeceEEECC
Confidence 23589877789999999999999999999999876555568999998877
Q ss_pred cCCCCCCeeEecHhhhcceEEEEECCCCeEEEEe
Q 010251 479 VAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAE 512 (514)
Q Consensus 479 ~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIGfa~ 512 (514)
.....++.||||++|||++|+|||++++|||||+
T Consensus 284 ~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 284 VPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 5555566899999999999999999999999996
No 4
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.5e-61 Score=495.28 Aligned_cols=325 Identities=46% Similarity=0.892 Sum_probs=288.4
Q ss_pred ceeccCceEEEEEEEcCCCceEEEEecCCCCceeeeCCCCCC-CcccccCCcccCCCCCceeecCeEEEEEeccceEEEE
Q 010251 81 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYF-SVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGF 159 (514)
Q Consensus 81 l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~G~ 159 (514)
|.|+.+.+|+++|+||||||+++|++||||+++||++..|.. ...|..++.|+|++|+|++..++.+.+.|++|++.|.
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~ 80 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGF 80 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEE
Confidence 568889999999999999999999999999999999999963 2478889999999999999999999999999999999
Q ss_pred EEEEEEEECCEEecceeEEEEEecccccccccccceEEeecccccccCCCCchHHHHHHcCCCCCCEEEEEecCCCCCCC
Q 010251 160 FSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEE 239 (514)
Q Consensus 160 ~~~D~v~igg~~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~ 239 (514)
+++|+|++++..+. +.||++.......|....++||||||++..+..+..|++++|++||.|++++||+||.+.++...
T Consensus 81 ~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~ 159 (326)
T cd05487 81 LSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSL 159 (326)
T ss_pred EeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCC
Confidence 99999999998884 88999887654445556789999999988777778899999999999999999999987643345
Q ss_pred CcEEEECCcCCCCcccceEEEecccCCceEEEEceEEECCeeecccCCCceEEEcCCCCCcccCHHHHHHHHHHhccCcc
Q 010251 240 GGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGV 319 (514)
Q Consensus 240 ~G~L~fGg~D~s~~~g~l~~~pl~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l~~~i~~~~~ 319 (514)
.|+|+|||+|+++|.|+++|+|+...++|+|.++++.|+++.+. +..+..++|||||+++++|.+++++|++++++..
T Consensus 160 ~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~- 237 (326)
T cd05487 160 GGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGAKE- 237 (326)
T ss_pred CcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCCcc-
Confidence 79999999999999999999999989999999999999998764 3456789999999999999999999999987650
Q ss_pred cccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCCcccccceeeeccCCCCCCCCCCCcccchhhhHHHHHHH
Q 010251 320 ISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQ 399 (514)
Q Consensus 320 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (514)
T Consensus 238 -------------------------------------------------------------------------------- 237 (326)
T cd05487 238 -------------------------------------------------------------------------------- 237 (326)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhchhhHHHHhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceEEeccCccceeEeeeEeccc
Q 010251 400 NKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDV 479 (514)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~ 479 (514)
..+.|.+||+....+|+|+|+|+|++++|++++|+++..+.....|++.|+..+.
T Consensus 238 -------------------------~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~ 292 (326)
T cd05487 238 -------------------------RLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDI 292 (326)
T ss_pred -------------------------cCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCC
Confidence 1346889999888899999999999999999999998665555789999998775
Q ss_pred CCCCCCeeEecHhhhcceEEEEECCCCeEEEEec
Q 010251 480 APPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 513 (514)
Q Consensus 480 ~~~~~~~~iLG~~fl~~~y~vfD~~~~rIGfa~a 513 (514)
.++.++.||||++|||++|++||++++|||||+|
T Consensus 293 ~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 293 PPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 4445568999999999999999999999999986
No 5
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=6.5e-62 Score=495.86 Aligned_cols=316 Identities=48% Similarity=0.926 Sum_probs=281.3
Q ss_pred EEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeecCeEEEEEeccceEEEEEEEEEEEEC
Q 010251 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKVG 168 (514)
Q Consensus 89 Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~G~~~~D~v~ig 168 (514)
|+++|+||||||+++|+|||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|.+++|+|+++
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig 79 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT-SQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVE 79 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEEC
Confidence 899999999999999999999999999999996 5689999999999999999999999999999999999999999999
Q ss_pred CEEecceeEEEEEecccccccccccceEEeecccccccCCCCchHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEEECCc
Q 010251 169 DLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFGGV 248 (514)
Q Consensus 169 g~~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg~ 248 (514)
+..++++.||++....+..|....++||||||++..+.....|++++|++||.|++++||+||.+.++....|+|+|||+
T Consensus 80 ~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~ 159 (316)
T cd05486 80 GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGF 159 (316)
T ss_pred CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEccc
Confidence 99999999999877655445556789999999998887778889999999999999999999987543445799999999
Q ss_pred CCCCcccceEEEecccCCceEEEEceEEECCeeecccCCCceEEEcCCCCCcccCHHHHHHHHHHhccCcccccchhhHH
Q 010251 249 DPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLV 328 (514)
Q Consensus 249 D~s~~~g~l~~~pl~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l~~~i~~~~~~~~~c~~~~ 328 (514)
|+++|.|++.|+|+...++|.|.+++|.|+++.+. +..+..++|||||+++++|++++++|.+++++.
T Consensus 160 d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~----------- 227 (316)
T cd05486 160 DTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGAT----------- 227 (316)
T ss_pred CHHHcccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCc-----------
Confidence 99999999999999999999999999999998764 345678999999999999999999998887654
Q ss_pred hhhhhHHHHHHHhccCcccccccCcccccCCCCcccccceeeeccCCCCCCCCCCCcccchhhhHHHHHHHHHHhhchhh
Q 010251 329 DQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETA 408 (514)
Q Consensus 329 ~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (514)
T Consensus 228 -------------------------------------------------------------------------------- 227 (316)
T cd05486 228 -------------------------------------------------------------------------------- 227 (316)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceEEeccCccceeEeeeEecccCCCCCCeeE
Q 010251 409 DQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWI 488 (514)
Q Consensus 409 ~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~i 488 (514)
...+.|.++|+....+|+|+|+|+|+.++|+|++|++.........|+++|+..+..+..++.||
T Consensus 228 ---------------~~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~I 292 (316)
T cd05486 228 ---------------ATDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWI 292 (316)
T ss_pred ---------------ccCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEE
Confidence 01356889999877899999999999999999999987533334689999988765444556899
Q ss_pred ecHhhhcceEEEEECCCCeEEEEe
Q 010251 489 LGDVFMGRYHTVFDYGNLSIGFAE 512 (514)
Q Consensus 489 LG~~fl~~~y~vfD~~~~rIGfa~ 512 (514)
||++|||++|+|||.+++|||||+
T Consensus 293 LGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 293 LGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EchHHhcceEEEEeCCCCEeeccC
Confidence 999999999999999999999996
No 6
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.5e-60 Score=488.22 Aligned_cols=327 Identities=55% Similarity=1.040 Sum_probs=289.8
Q ss_pred EeceeccCceEEEEEEEcCCCceEEEEecCCCCceeeeCCCCCC-CcccccCCcccCCCCCceeecCeEEEEEeccceEE
Q 010251 79 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYF-SVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAIS 157 (514)
Q Consensus 79 ~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~ 157 (514)
.+|+|+.+.+|+++|+||||+|++.|++||||+++||+|..|.. ...|..++.|+|++|+|++..++.|.+.|++|++.
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~ 81 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLS 81 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEE
Confidence 47899999999999999999999999999999999999999953 23788888999999999999999999999999999
Q ss_pred EEEEEEEEEECCEEecceeEEEEEecccccccccccceEEeecccccccCCCCchHHHHHHcCCCCCCEEEEEecCCCCC
Q 010251 158 GFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEG 237 (514)
Q Consensus 158 G~~~~D~v~igg~~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~ 237 (514)
|.+++|+|++++..++++.||++....+..|.....+||||||+...+.....|++.+|++||.|.+++||+||.+....
T Consensus 82 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~ 161 (329)
T cd05485 82 GFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSA 161 (329)
T ss_pred EEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCC
Confidence 99999999999999999999999876654455567899999999988776778899999999999999999999875433
Q ss_pred CCCcEEEECCcCCCCcccceEEEecccCCceEEEEceEEECCeeecccCCCceEEEcCCCCCcccCHHHHHHHHHHhccC
Q 010251 238 EEGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 317 (514)
Q Consensus 238 ~~~G~L~fGg~D~s~~~g~l~~~pl~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l~~~i~~~ 317 (514)
...|+|+|||+|+++|.|+++|+|+...++|.|.++++.++++.+. ..+..++|||||+++++|++++++|.+++++.
T Consensus 162 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~--~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~ 239 (329)
T cd05485 162 KEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFC--SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK 239 (329)
T ss_pred CCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeec--CCCcEEEEccCCcceeCCHHHHHHHHHHhCCc
Confidence 3579999999999999999999999989999999999999998763 45678999999999999999999999988654
Q ss_pred cccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCCcccccceeeeccCCCCCCCCCCCcccchhhhHHHHH
Q 010251 318 GVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIW 397 (514)
Q Consensus 318 ~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (514)
.
T Consensus 240 ~------------------------------------------------------------------------------- 240 (329)
T cd05485 240 P------------------------------------------------------------------------------- 240 (329)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHhhchhhHHHHhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceEEeccCccceeEeeeEec
Q 010251 398 MQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAF 477 (514)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~ 477 (514)
...+.|.++|+....+|+|+|+|||++++|+|++|+++........|+++|+..
T Consensus 241 --------------------------~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~ 294 (329)
T cd05485 241 --------------------------IIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGI 294 (329)
T ss_pred --------------------------ccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeeeEEEC
Confidence 013458899998778999999999999999999999987654557899999877
Q ss_pred ccCCCCCCeeEecHhhhcceEEEEECCCCeEEEEe
Q 010251 478 DVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAE 512 (514)
Q Consensus 478 ~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIGfa~ 512 (514)
+.++..++.||||++|||++|+|||++++|||||+
T Consensus 295 ~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 295 DIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred cCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 65555556899999999999999999999999985
No 7
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.8e-60 Score=485.52 Aligned_cols=317 Identities=47% Similarity=0.872 Sum_probs=282.4
Q ss_pred EeceeccCceEEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeecCeEEEEEeccceEEE
Q 010251 79 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISG 158 (514)
Q Consensus 79 ~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~G 158 (514)
.||.|+.+.+|+++|+||||||++.|+|||||+++||+|..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G 79 (317)
T cd05478 1 EPLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS-SQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTG 79 (317)
T ss_pred CccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC-cccccccCcCCCCCCcceeeCCcEEEEEECCceEEE
Confidence 3789999999999999999999999999999999999999996 457988999999999999999999999999999999
Q ss_pred EEEEEEEEECCEEecceeEEEEEecccccccccccceEEeecccccccCCCCchHHHHHHcCCCCCCEEEEEecCCCCCC
Q 010251 159 FFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGE 238 (514)
Q Consensus 159 ~~~~D~v~igg~~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~ 238 (514)
.+++|+|++|+..++++.||++....+..+.....+||||||++..+..+..|++++|++||+|++++||+||.+.. .
T Consensus 80 ~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~--~ 157 (317)
T cd05478 80 ILGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNG--Q 157 (317)
T ss_pred EEeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCC--C
Confidence 99999999999999999999998765532333457999999998887767788999999999999999999998763 2
Q ss_pred CCcEEEECCcCCCCcccceEEEecccCCceEEEEceEEECCeeecccCCCceEEEcCCCCCcccCHHHHHHHHHHhccCc
Q 010251 239 EGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASG 318 (514)
Q Consensus 239 ~~G~L~fGg~D~s~~~g~l~~~pl~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l~~~i~~~~ 318 (514)
.+|+|+|||+|+++|.|+++|+|+....+|.|.++++.||++.+. ...+..++|||||+++++|++++++|.+++++..
T Consensus 158 ~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~-~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~ 236 (317)
T cd05478 158 QGSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVA-CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ 236 (317)
T ss_pred CCeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEc-cCCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc
Confidence 379999999999999999999999988999999999999999875 3456789999999999999999999999886540
Q ss_pred ccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCCcccccceeeeccCCCCCCCCCCCcccchhhhHHHHHH
Q 010251 319 VISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWM 398 (514)
Q Consensus 319 ~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (514)
T Consensus 237 -------------------------------------------------------------------------------- 236 (317)
T cd05478 237 -------------------------------------------------------------------------------- 236 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhchhhHHHHhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceEEeccCccceeEeeeEecc
Q 010251 399 QNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFD 478 (514)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~ 478 (514)
...+.|.++|+....+|.|+|+|+|+.|+|+|++|+.+. ...|++.|+..+
T Consensus 237 -------------------------~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~----~~~C~~~~~~~~ 287 (317)
T cd05478 237 -------------------------NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD----QGSCTSGFQSMG 287 (317)
T ss_pred -------------------------ccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC----CCEEeEEEEeCC
Confidence 124568899998888999999999999999999999864 358999887543
Q ss_pred cCCCCCCeeEecHhhhcceEEEEECCCCeEEEEe
Q 010251 479 VAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAE 512 (514)
Q Consensus 479 ~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIGfa~ 512 (514)
.++.||||++|||++|++||++++||||||
T Consensus 288 ----~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 288 ----LGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred ----CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 235899999999999999999999999996
No 8
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=3.7e-60 Score=483.71 Aligned_cols=320 Identities=49% Similarity=0.924 Sum_probs=285.1
Q ss_pred EeceeccCceEEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeecCeEEEEEeccceEEE
Q 010251 79 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISG 158 (514)
Q Consensus 79 ~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~G 158 (514)
+||.|+.+.+|+++|+||||+|++.|++||||+++||+|..|. ...|..++.|++++|+|++..++.+.+.|++|+++|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G 79 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG-SIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEG 79 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC-CcccCCcceECCCCCcceeeCCCEEEEEECCceEEE
Confidence 4789999999999999999999999999999999999999996 558998899999999999999999999999999999
Q ss_pred EEEEEEEEECCEEecceeEEEEEecccccccccccceEEeecccccccCCCCchHHHHHHcCCCCCCEEEEEecCCCCCC
Q 010251 159 FFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGE 238 (514)
Q Consensus 159 ~~~~D~v~igg~~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~ 238 (514)
.+++|+|++++..++++.||++....+..|.....+||||||++..+.....|.+.+|++||.|++++||+||.+.. .
T Consensus 80 ~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~ 157 (320)
T cd05488 80 FVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--E 157 (320)
T ss_pred EEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--C
Confidence 99999999999999999999998766544545578999999999887666778889999999999999999999753 2
Q ss_pred CCcEEEECCcCCCCcccceEEEecccCCceEEEEceEEECCeeecccCCCceEEEcCCCCCcccCHHHHHHHHHHhccCc
Q 010251 239 EGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASG 318 (514)
Q Consensus 239 ~~G~L~fGg~D~s~~~g~l~~~pl~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l~~~i~~~~ 318 (514)
..|+|+|||+|++++.|+++|+|+...++|.|.+++|.||++.+.. .+..++|||||+++++|++++++|.+++++..
T Consensus 158 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~--~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~ 235 (320)
T cd05488 158 DGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELEL--ENTGAAIDTGTSLIALPSDLAEMLNAEIGAKK 235 (320)
T ss_pred CCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEecc--CCCeEEEcCCcccccCCHHHHHHHHHHhCCcc
Confidence 3799999999999999999999999889999999999999987753 45689999999999999999999999886540
Q ss_pred ccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCCcccccceeeeccCCCCCCCCCCCcccchhhhHHHHHH
Q 010251 319 VISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWM 398 (514)
Q Consensus 319 ~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (514)
T Consensus 236 -------------------------------------------------------------------------------- 235 (320)
T cd05488 236 -------------------------------------------------------------------------------- 235 (320)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhchhhHHHHhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceEEeccCccceeEeeeEecc
Q 010251 399 QNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFD 478 (514)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~ 478 (514)
...+.|.++|+....+|+|+|+|+|++++|+|++|+++.. +.|++.+...+
T Consensus 236 -------------------------~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~----g~C~~~~~~~~ 286 (320)
T cd05488 236 -------------------------SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEVS----GSCISAFTGMD 286 (320)
T ss_pred -------------------------ccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecCC----CeEEEEEEECc
Confidence 1245688999988789999999999999999999998532 47999998776
Q ss_pred cCCCCCCeeEecHhhhcceEEEEECCCCeEEEEe
Q 010251 479 VAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAE 512 (514)
Q Consensus 479 ~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIGfa~ 512 (514)
.+...++.||||++|||++|++||++++|||||+
T Consensus 287 ~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 287 FPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 5444456899999999999999999999999996
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=7.9e-60 Score=480.95 Aligned_cols=317 Identities=45% Similarity=0.901 Sum_probs=282.0
Q ss_pred CceEEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeecCeEEEEEeccceEEEEEEEEEE
Q 010251 86 DAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNV 165 (514)
Q Consensus 86 ~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~G~~~~D~v 165 (514)
|.+|+++|+||||||++.|++||||+++||++..|. ...|..++.|+|++|+||+..++.|.+.|++|++.|.++.|+|
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i 79 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQ-SQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTV 79 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCC-CccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEE
Confidence 468999999999999999999999999999999996 5589989999999999999999999999999999999999999
Q ss_pred EECCEEecceeEEEEEecccccccccccceEEeecccccccCCCCchHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEEE
Q 010251 166 KVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVF 245 (514)
Q Consensus 166 ~igg~~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~f 245 (514)
++|+..++++.|||+....+..+.....+||||||++..+....++++++|+++|.|++++||+||.+.. ....|+|+|
T Consensus 80 ~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~f 158 (318)
T cd05477 80 TVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVF 158 (318)
T ss_pred EECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEE
Confidence 9999999999999999765544445567999999999888777789999999999999999999998752 234799999
Q ss_pred CCcCCCCcccceEEEecccCCceEEEEceEEECCeeecccCCCceEEEcCCCCCcccCHHHHHHHHHHhccCcccccchh
Q 010251 246 GGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECK 325 (514)
Q Consensus 246 Gg~D~s~~~g~l~~~pl~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l~~~i~~~~~~~~~c~ 325 (514)
||+|++++.|++.|+|+...++|.|.+++|.|+++.+..+..+..++|||||+++++|++++++|++++++.
T Consensus 159 Gg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~-------- 230 (318)
T cd05477 159 GGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQ-------- 230 (318)
T ss_pred cccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCc--------
Confidence 999999999999999999889999999999999988765666778999999999999999999999988765
Q ss_pred hHHhhhhhHHHHHHHhccCcccccccCcccccCCCCcccccceeeeccCCCCCCCCCCCcccchhhhHHHHHHHHHHhhc
Q 010251 326 TLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRN 405 (514)
Q Consensus 326 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (514)
T Consensus 231 -------------------------------------------------------------------------------- 230 (318)
T cd05477 231 -------------------------------------------------------------------------------- 230 (318)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceEEeccCccceeEeeeEecccCCCCC-
Q 010251 406 ETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRG- 484 (514)
Q Consensus 406 ~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~- 484 (514)
....+.|.++|+....+|+|+|+|+|++++|+|++|+.+. ...|.++|+....+...+
T Consensus 231 -----------------~~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~----~~~C~~~i~~~~~~~~~~~ 289 (318)
T cd05477 231 -----------------QDQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN----NGYCTVGIEPTYLPSQNGQ 289 (318)
T ss_pred -----------------cccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC----CCeEEEEEEecccCCCCCC
Confidence 0124568899998888999999999999999999999864 258998887665433333
Q ss_pred CeeEecHhhhcceEEEEECCCCeEEEEec
Q 010251 485 PLWILGDVFMGRYHTVFDYGNLSIGFAEA 513 (514)
Q Consensus 485 ~~~iLG~~fl~~~y~vfD~~~~rIGfa~a 513 (514)
+.||||++|||++|++||++++|||||+|
T Consensus 290 ~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 290 PLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred ceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 47999999999999999999999999986
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=5.6e-59 Score=490.55 Aligned_cols=323 Identities=35% Similarity=0.664 Sum_probs=280.5
Q ss_pred CcceEeceeccCceEEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeecCeEEEEEeccc
Q 010251 75 DTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTG 154 (514)
Q Consensus 75 ~~~~~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~g 154 (514)
....++|.|+.+.+|+++|+||||||+|+|+|||||+++||+|..|. ...|..++.|||+.|+||+..++.+.+.|++|
T Consensus 126 ~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~-~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~G 204 (453)
T PTZ00147 126 EFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT-TEGCETKNLYDSSKSKTYEKDGTKVEMNYVSG 204 (453)
T ss_pred CCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCC-cccccCCCccCCccCcceEECCCEEEEEeCCC
Confidence 56789999999999999999999999999999999999999999996 56899999999999999999999999999999
Q ss_pred eEEEEEEEEEEEECCEEecceeEEEEEecccc--cccccccceEEeecccccccCCCCchHHHHHHcCCCCCCEEEEEec
Q 010251 155 AISGFFSQDNVKVGDLVVKNQDFIEATKEASI--TFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLN 232 (514)
Q Consensus 155 s~~G~~~~D~v~igg~~v~~~~fg~~~~~~~~--~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~ 232 (514)
++.|.++.|+|++|+..++ ..|+++.+..+. .+....++||||||++..+.....|++.+|++||.|++++||+||.
T Consensus 205 svsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~ 283 (453)
T PTZ00147 205 TVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLP 283 (453)
T ss_pred CEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEec
Confidence 9999999999999999988 578887765432 1334568999999999888777889999999999999999999998
Q ss_pred CCCCCCCCcEEEECCcCCCCcccceEEEecccCCceEEEEceEEECCeeecccCCCceEEEcCCCCCcccCHHHHHHHHH
Q 010251 233 RDIEGEEGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINH 312 (514)
Q Consensus 233 ~~~~~~~~G~L~fGg~D~s~~~g~l~~~pl~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l~~ 312 (514)
+.. ...|.|+|||+|+++|.|++.|+|+....+|.|.++ +.+++... ....|+|||||+++++|+++++++.+
T Consensus 284 ~~~--~~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~~----~~~~aIiDSGTsli~lP~~~~~ai~~ 356 (453)
T PTZ00147 284 PED--KHKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVSS----EKANVIVDSGTSVITVPTEFLNKFVE 356 (453)
T ss_pred CCC--CCCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEec----CceeEEECCCCchhcCCHHHHHHHHH
Confidence 642 237999999999999999999999998899999998 57776432 46789999999999999999999999
Q ss_pred HhccCcccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCCcccccceeeeccCCCCCCCCCCCcccchhhh
Q 010251 313 AIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACE 392 (514)
Q Consensus 313 ~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (514)
++++..
T Consensus 357 ~l~~~~-------------------------------------------------------------------------- 362 (453)
T PTZ00147 357 SLDVFK-------------------------------------------------------------------------- 362 (453)
T ss_pred HhCCee--------------------------------------------------------------------------
Confidence 886540
Q ss_pred HHHHHHHHHHhhchhhHHHHhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceEEeccCccceeEe
Q 010251 393 MAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCIS 472 (514)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~ 472 (514)
. ...+.|.++|+. ..+|+|+|+|+|..++|+|++|+.+........|++
T Consensus 363 -----------------------------~-~~~~~y~~~C~~-~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~~ 411 (453)
T PTZ00147 363 -----------------------------V-PFLPLYVTTCNN-TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCML 411 (453)
T ss_pred -----------------------------c-CCCCeEEEeCCC-CCCCeEEEEECCEEEEECHHHheeccccCCCcEEEE
Confidence 0 013457889986 579999999999999999999998654444568999
Q ss_pred eeEecccCCCCCCeeEecHhhhcceEEEEECCCCeEEEEecC
Q 010251 473 GFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 514 (514)
Q Consensus 473 ~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIGfa~a~ 514 (514)
+|++.+. .++.||||++|||++|+|||++++|||||+|+
T Consensus 412 ~i~~~~~---~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 412 NIIPIDL---EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 8886542 23579999999999999999999999999985
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=5.6e-58 Score=482.08 Aligned_cols=324 Identities=34% Similarity=0.667 Sum_probs=278.5
Q ss_pred CCcceEeceeccCceEEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeecCeEEEEEecc
Q 010251 74 SDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGT 153 (514)
Q Consensus 74 ~~~~~~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~ 153 (514)
+....++|.|+.+.+|+++|+||||||+|+|+|||||+++||++..|. ...|..++.|+|+.|+|++..++.+.+.|++
T Consensus 124 ~~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~-~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG~ 202 (450)
T PTZ00013 124 SENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD-SIGCSIKNLYDSSKSKSYEKDGTKVDITYGS 202 (450)
T ss_pred cCCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC-ccccccCCCccCccCcccccCCcEEEEEECC
Confidence 356689999999999999999999999999999999999999999996 5689999999999999999999999999999
Q ss_pred ceEEEEEEEEEEEECCEEecceeEEEEEeccc--ccccccccceEEeecccccccCCCCchHHHHHHcCCCCCCEEEEEe
Q 010251 154 GAISGFFSQDNVKVGDLVVKNQDFIEATKEAS--ITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWL 231 (514)
Q Consensus 154 gs~~G~~~~D~v~igg~~v~~~~fg~~~~~~~--~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l 231 (514)
|++.|.+++|+|++|+.+++ ..|+++..... ..+....++||||||++..+.....|++++|++||.|++++||+||
T Consensus 203 Gsv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L 281 (450)
T PTZ00013 203 GTVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYL 281 (450)
T ss_pred ceEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEe
Confidence 99999999999999999987 57887765432 1233457899999999988776788999999999999999999999
Q ss_pred cCCCCCCCCcEEEECCcCCCCcccceEEEecccCCceEEEEceEEECCeeecccCCCceEEEcCCCCCcccCHHHHHHHH
Q 010251 232 NRDIEGEEGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQIN 311 (514)
Q Consensus 232 ~~~~~~~~~G~L~fGg~D~s~~~g~l~~~pl~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l~ 311 (514)
.+.. ..+|+|+|||+|+++|.|+++|+|+....+|.|.++ +.+|.... ....|++||||+++++|+++++++.
T Consensus 282 ~~~~--~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~~~~i~ 354 (450)
T PTZ00013 282 PVHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEFLNKFF 354 (450)
T ss_pred cCCC--CCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccCCHHHHHHHH
Confidence 8642 237999999999999999999999998899999998 66765432 3568999999999999999999999
Q ss_pred HHhccCcccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCCcccccceeeeccCCCCCCCCCCCcccchhh
Q 010251 312 HAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSAC 391 (514)
Q Consensus 312 ~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
+++++..
T Consensus 355 ~~l~~~~------------------------------------------------------------------------- 361 (450)
T PTZ00013 355 ANLNVIK------------------------------------------------------------------------- 361 (450)
T ss_pred HHhCCee-------------------------------------------------------------------------
Confidence 9886540
Q ss_pred hHHHHHHHHHHhhchhhHHHHhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceEEeccCccceeE
Q 010251 392 EMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCI 471 (514)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~y~~~~~~~~~~~C~ 471 (514)
....+.|.++|+. ..+|+|+|+|+|.+++|+|++|+.+........|+
T Consensus 362 -------------------------------~~~~~~y~~~C~~-~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~ 409 (450)
T PTZ00013 362 -------------------------------VPFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCM 409 (450)
T ss_pred -------------------------------cCCCCeEEeecCC-CCCCeEEEEECCEEEEECHHHheehhccCCCCeeE
Confidence 0113458889985 57899999999999999999999864333346899
Q ss_pred eeeEecccCCCCCCeeEecHhhhcceEEEEECCCCeEEEEecC
Q 010251 472 SGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 514 (514)
Q Consensus 472 ~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIGfa~a~ 514 (514)
+.+.+.+. .++.||||++|||++|+|||++++|||||+|+
T Consensus 410 ~~i~~~~~---~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 410 ITMLPVDI---DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred EEEEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 98876542 23589999999999999999999999999985
No 12
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2.5e-55 Score=446.44 Aligned_cols=316 Identities=39% Similarity=0.744 Sum_probs=280.4
Q ss_pred eEEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeecCeEEEEEeccceEEEEEEEEEEEE
Q 010251 88 QYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKV 167 (514)
Q Consensus 88 ~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~G~~~~D~v~i 167 (514)
+|+++|+||||+|+++|++||||+++||++..|..+..|..+..|++..|+|++..++.+.+.|++|+++|.+++|+|.|
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~i 80 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSI 80 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEee
Confidence 69999999999999999999999999999999963335788899999999999999999999999999999999999999
Q ss_pred CCEEecceeEEEEEecccccccccccceEEeecccccccCC-CCchHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEEEC
Q 010251 168 GDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGK-AIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFG 246 (514)
Q Consensus 168 gg~~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~-~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fG 246 (514)
++..+.++.||++....+..+....++||||||++..+... ..+++++|+++|+|++++||++|.+.. ...|+|+||
T Consensus 81 g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~G 158 (317)
T PF00026_consen 81 GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFG 158 (317)
T ss_dssp TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEES
T ss_pred eeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheee
Confidence 99999999999999876655667788999999988776554 788999999999999999999999874 447999999
Q ss_pred CcCCCCcccceEEEecccCCceEEEEceEEECCeeecccCCCceEEEcCCCCCcccCHHHHHHHHHHhccCcccccchhh
Q 010251 247 GVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKT 326 (514)
Q Consensus 247 g~D~s~~~g~l~~~pl~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l~~~i~~~~~~~~~c~~ 326 (514)
|+|+++|.|+++|+|+...++|.+.+++|.+++... .......++||||++++++|++++++|++++++..
T Consensus 159 g~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~-~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~-------- 229 (317)
T PF00026_consen 159 GYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESV-FSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSY-------- 229 (317)
T ss_dssp SEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEE-EEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEE--------
T ss_pred ccccccccCceeccCccccccccccccccccccccc-ccccceeeecccccccccccchhhHHHHhhhcccc--------
Confidence 999999999999999999999999999999999832 23456789999999999999999999999997761
Q ss_pred HHhhhhhHHHHHHHhccCcccccccCcccccCCCCcccccceeeeccCCCCCCCCCCCcccchhhhHHHHHHHHHHhhch
Q 010251 327 LVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNE 406 (514)
Q Consensus 327 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (514)
T Consensus 230 -------------------------------------------------------------------------------- 229 (317)
T PF00026_consen 230 -------------------------------------------------------------------------------- 229 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceEEeccCccceeEeeeEecccCCCCCCe
Q 010251 407 TADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPL 486 (514)
Q Consensus 407 ~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~ 486 (514)
..+.|.++|+....+|.|+|+|++.+++|+|++|+.+........|.+.|..++. ....+.
T Consensus 230 ------------------~~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~-~~~~~~ 290 (317)
T PF00026_consen 230 ------------------SDGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDS-SDDSDD 290 (317)
T ss_dssp ------------------ECSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEESS-TTSSSE
T ss_pred ------------------cceeEEEecccccccceEEEeeCCEEEEecchHhcccccccccceeEeeeecccc-cccCCc
Confidence 0156899999887899999999999999999999998876655689999998664 345578
Q ss_pred eEecHhhhcceEEEEECCCCeEEEEec
Q 010251 487 WILGDVFMGRYHTVFDYGNLSIGFAEA 513 (514)
Q Consensus 487 ~iLG~~fl~~~y~vfD~~~~rIGfa~a 513 (514)
||||.+|||++|++||++++|||||+|
T Consensus 291 ~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 291 WILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred eEecHHHhhceEEEEeCCCCEEEEecC
Confidence 999999999999999999999999997
No 13
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.3e-51 Score=412.58 Aligned_cols=219 Identities=36% Similarity=0.541 Sum_probs=192.2
Q ss_pred EEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceee-cCeEEEEEeccce-EEEEEEEEEEE
Q 010251 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKR-NGTSAAIQYGTGA-ISGFFSQDNVK 166 (514)
Q Consensus 89 Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~-~~~~~~~~Yg~gs-~~G~~~~D~v~ 166 (514)
|+++|+||||||++.|+|||||+++||++..|. ...|..+..|+++.|+|++. .++.+.+.|++|+ +.|.+++|+|+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~-~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ 79 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP-AAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVS 79 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC-chhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEE
Confidence 799999999999999999999999999999996 33455677899999999987 5789999999997 89999999999
Q ss_pred ECCEEecceeEEEEEecccccccccccceEEeecccccccC---CCCchHHHHHHcCCCCCCEEEEEecCCCCCCCCcEE
Q 010251 167 VGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIG---KAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEI 243 (514)
Q Consensus 167 igg~~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~---~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L 243 (514)
+++..++++.||++....+..+....++||||||++..+.. ...+++++|.+|+. +++||+||.+. ..|+|
T Consensus 80 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~----~~G~l 153 (278)
T cd06097 80 IGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKA----APGFY 153 (278)
T ss_pred ECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCC----CCcEE
Confidence 99999999999999886554455567899999999876542 35678999999975 79999999863 27999
Q ss_pred EECCcCCCCcccceEEEeccc-CCceEEEEceEEECCeeecccCCCceEEEcCCCCCcccCHHHHHHHHHHhc
Q 010251 244 VFGGVDPDHYKGEHTYVPVTK-KGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIG 315 (514)
Q Consensus 244 ~fGg~D~s~~~g~l~~~pl~~-~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l~~~i~ 315 (514)
+|||+|+++|.|+++|+|+.. .++|.|.+++|.|+++... ...+..++|||||+++++|++++++|.+++.
T Consensus 154 ~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~ 225 (278)
T cd06097 154 TFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVP 225 (278)
T ss_pred EEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCc
Confidence 999999999999999999976 7899999999999997443 3467889999999999999999999999884
No 14
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-50 Score=425.26 Aligned_cols=320 Identities=43% Similarity=0.797 Sum_probs=265.6
Q ss_pred ceEeceeccCceEEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCccccc-CCc-ccCCCCCceeecCeE--------
Q 010251 77 DIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYF-HSK-YKSSHSSTYKRNGTS-------- 146 (514)
Q Consensus 77 ~~~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~-~~~-f~~~~SsT~~~~~~~-------- 146 (514)
...++..+.+.+|+++|+||||||+|+|++||||+++||+|..|.. .|.. +.. |+|+.|+||+..+|.
T Consensus 35 ~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~--~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~ 112 (398)
T KOG1339|consen 35 LPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS--ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLP 112 (398)
T ss_pred cccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc--cccccCCCccCccccccccccCCCCccccccc
Confidence 3456677778899999999999999999999999999999999952 7875 455 999999999997743
Q ss_pred ----------EEEEeccc-eEEEEEEEEEEEECC---EEecceeEEEEEecccccccc-cccceEEeecccccccCCCCc
Q 010251 147 ----------AAIQYGTG-AISGFFSQDNVKVGD---LVVKNQDFIEATKEASITFLA-AKFDGILGLGFQEISIGKAIP 211 (514)
Q Consensus 147 ----------~~~~Yg~g-s~~G~~~~D~v~igg---~~v~~~~fg~~~~~~~~~~~~-~~~~GIlGLg~~~~s~~~~~~ 211 (514)
|.+.|++| +++|++++|+|++++ ..++++.|||+....+. +.. .+++||||||+..++...+.+
T Consensus 113 ~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~~ 191 (398)
T KOG1339|consen 113 QSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQLP 191 (398)
T ss_pred cCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceeecc
Confidence 99999995 589999999999998 78888999999988765 444 678999999999998655443
Q ss_pred hHHHHHHcCCCCCCEEEEEecCCCCC-CCCcEEEECCcCCCCcccceEEEecccCC--ceEEEEceEEECCee----ecc
Q 010251 212 VWYNMLDQGLVKEPVFSFWLNRDIEG-EEGGEIVFGGVDPDHYKGEHTYVPVTKKG--YWQFEMGDVLIDGET----TGY 284 (514)
Q Consensus 212 ~~~~L~~qg~i~~~~FSl~l~~~~~~-~~~G~L~fGg~D~s~~~g~l~~~pl~~~~--~w~v~l~~i~vgg~~----~~~ 284 (514)
.+.++ .++||+||.+.... ..+|.|+||++|+.++.++++|+|+.... +|.|.+++|.|+++. ..+
T Consensus 192 ~~~~~-------~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~ 264 (398)
T KOG1339|consen 192 SFYNA-------INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLF 264 (398)
T ss_pred cccCC-------ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceE
Confidence 33222 13899999987432 25899999999999999999999998776 999999999999843 222
Q ss_pred cCCCceEEEcCCCCCcccCHHHHHHHHHHhccCcccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCCccc
Q 010251 285 CSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFS 364 (514)
Q Consensus 285 ~~~~~~aiiDTGTs~i~lp~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 364 (514)
+.+...+|+||||+++++|+++|++|.+++++.-
T Consensus 265 ~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~---------------------------------------------- 298 (398)
T KOG1339|consen 265 CTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEV---------------------------------------------- 298 (398)
T ss_pred ecCCCCEEEECCcceeeccHHHHHHHHHHHHhhe----------------------------------------------
Confidence 3346889999999999999999999999997750
Q ss_pred ccceeeeccCCCCCCCCCCCcccchhhhHHHHHHHHHHhhchhhHHHHhhhhccccCCCCCCCCeeeeCCCCCC----CC
Q 010251 365 MGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSS----MP 440 (514)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~----~P 440 (514)
+.....+.+.++|..... +|
T Consensus 299 --------------------------------------------------------~~~~~~~~~~~~C~~~~~~~~~~P 322 (398)
T KOG1339|consen 299 --------------------------------------------------------SVVGTDGEYFVPCFSISTSGVKLP 322 (398)
T ss_pred --------------------------------------------------------eccccCCceeeecccCCCCcccCC
Confidence 001235567788887766 99
Q ss_pred cEEEEEC-CEEEEeCcCcceEEeccCccceeEeeeEecccCCCCCCeeEecHhhhcceEEEEECC-CCeEEEEec
Q 010251 441 NVSFTIG-GKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYG-NLSIGFAEA 513 (514)
Q Consensus 441 ~l~f~fg-g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~-~~rIGfa~a 513 (514)
.|+|+|+ |+.|.+++++|+++...+... |++.+...+.+ +.||||+.|+|+++++||.. ++|||||++
T Consensus 323 ~i~~~f~~g~~~~l~~~~y~~~~~~~~~~-Cl~~~~~~~~~----~~~ilG~~~~~~~~~~~D~~~~~riGfa~~ 392 (398)
T KOG1339|consen 323 DITFHFGGGAVFSLPPKNYLVEVSDGGGV-CLAFFNGMDSG----PLWILGDVFQQNYLVVFDLGENSRVGFAPA 392 (398)
T ss_pred cEEEEECCCcEEEeCccceEEEECCCCCc-eeeEEecCCCC----ceEEEchHHhCCEEEEEeCCCCCEEEeccc
Confidence 9999998 899999999999987765222 99888765422 68999999999999999999 999999985
No 15
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.3e-50 Score=420.54 Aligned_cols=316 Identities=27% Similarity=0.455 Sum_probs=247.1
Q ss_pred ceEEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeecCeEEEEEeccceEEEEEEEEEEE
Q 010251 87 AQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVK 166 (514)
Q Consensus 87 ~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~G~~~~D~v~ 166 (514)
..|+++|+||||||+|.|+|||||+++||+|..| |..++.|+|++|+|++..++.|.++|++|++.|.+++|+|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~-----~~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ 76 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPH-----PFIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVS 76 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCC-----ccccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEE
Confidence 3699999999999999999999999999999877 33467899999999999999999999999999999999999
Q ss_pred ECCEEeccee----EEEEEecccccccccccceEEeeccccccc--CCCCchHHHHHHcCCCCCCEEEEEecCCC-----
Q 010251 167 VGDLVVKNQD----FIEATKEASITFLAAKFDGILGLGFQEISI--GKAIPVWYNMLDQGLVKEPVFSFWLNRDI----- 235 (514)
Q Consensus 167 igg~~v~~~~----fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~--~~~~~~~~~L~~qg~i~~~~FSl~l~~~~----- 235 (514)
|++. .++. |+++....+.......++||||||++.++. ....|++++|++|+.+ +++||+||+...
T Consensus 77 ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~ 153 (364)
T cd05473 77 IPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNG 153 (364)
T ss_pred ECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEeccccccccc
Confidence 9863 2333 344443333212223679999999998764 2467899999999987 579999986321
Q ss_pred --CCCCCcEEEECCcCCCCcccceEEEecccCCceEEEEceEEECCeeecccCC---CceEEEcCCCCCcccCHHHHHHH
Q 010251 236 --EGEEGGEIVFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCST---GCNAIADSGTSLLAGPTTIITQI 310 (514)
Q Consensus 236 --~~~~~G~L~fGg~D~s~~~g~l~~~pl~~~~~w~v~l~~i~vgg~~~~~~~~---~~~aiiDTGTs~i~lp~~~~~~l 310 (514)
.....|+|+|||+|+++|.|++.|+|+....+|.|.+++|.|+++.+..... ...+||||||+++++|++++++|
T Consensus 154 ~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l 233 (364)
T cd05473 154 SASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAA 233 (364)
T ss_pred ccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHH
Confidence 1234799999999999999999999999889999999999999988764321 24699999999999999999999
Q ss_pred HHHhccCcccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCCcccccceeeeccCCCCCCCCCCCcccchh
Q 010251 311 NHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSA 390 (514)
Q Consensus 311 ~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
.+++++... .+
T Consensus 234 ~~~l~~~~~------------------------~~--------------------------------------------- 244 (364)
T cd05473 234 VDAIKAASL------------------------IE--------------------------------------------- 244 (364)
T ss_pred HHHHHhhcc------------------------cc---------------------------------------------
Confidence 999976510 00
Q ss_pred hhHHHHHHHHHHhhchhhHHHHhhhhccccCCCCC-CCCeeeeCCCCC-----CCCcEEEEECC------EEEEeCcCcc
Q 010251 391 CEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSP-NGESAVDCDNLS-----SMPNVSFTIGG------KVFDLAPNEY 458 (514)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~~~~C~~~~-----~~P~l~f~fgg------~~~~l~~~~y 458 (514)
..+.. .+.+.++|.... .+|+|+|+|+| .+++|+|++|
T Consensus 245 ------------------------------~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y 294 (364)
T cd05473 245 ------------------------------DFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQLY 294 (364)
T ss_pred ------------------------------cCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHHHh
Confidence 00000 122346786543 58999999964 4789999999
Q ss_pred eEEecc-CccceeEeeeEecccCCCCCCeeEecHhhhcceEEEEECCCCeEEEEecC
Q 010251 459 VLEVGE-GVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 514 (514)
Q Consensus 459 ~~~~~~-~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIGfa~a~ 514 (514)
+..... .....|+. +... ...+.||||+.|||++|++||++++|||||+++
T Consensus 295 ~~~~~~~~~~~~C~~-~~~~----~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~ 346 (364)
T cd05473 295 LRPVEDHGTQLDCYK-FAIS----QSTNGTVIGAVIMEGFYVVFDRANKRVGFAVST 346 (364)
T ss_pred hhhhccCCCcceeeE-Eeee----cCCCceEEeeeeEcceEEEEECCCCEEeeEecc
Confidence 986432 22357984 2211 123479999999999999999999999999874
No 16
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=3.2e-49 Score=416.94 Aligned_cols=304 Identities=21% Similarity=0.376 Sum_probs=236.9
Q ss_pred cCceEEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccc--cCCcccCCCCCceeecC------------------
Q 010251 85 MDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCY--FHSKYKSSHSSTYKRNG------------------ 144 (514)
Q Consensus 85 ~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~--~~~~f~~~~SsT~~~~~------------------ 144 (514)
.+.+|+++|+||||||++.|++||||+++||+|.+|. .|. .++.|||++|+||+...
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~---~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD---DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc---ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC
Confidence 4678999999999999999999999999999999995 676 45799999999998742
Q ss_pred --eEEEEEeccce-EEEEEEEEEEEECC-----EEecceeEEEEEecccccccccccceEEeecccccccCCCCchHHHH
Q 010251 145 --TSAAIQYGTGA-ISGFFSQDNVKVGD-----LVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNM 216 (514)
Q Consensus 145 --~~~~~~Yg~gs-~~G~~~~D~v~igg-----~~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L 216 (514)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||+....+. |. ...+||||||+...+ ++.||
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~-f~-~~~~GilGLG~~~~S------l~sql 229 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT-FD-EKGSGIVGLGGGPLS------LISQL 229 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC-cc-CCCceeEecCCCCcc------HHHHh
Confidence 79999999998 58999999999987 46889999999876542 32 257999999998766 45565
Q ss_pred HHcCCCCCCEEEEEecCCC-CCCCCcEEEECCcCCCCccc-ceEEEeccc---CCceEEEEceEEECCeeecccCC----
Q 010251 217 LDQGLVKEPVFSFWLNRDI-EGEEGGEIVFGGVDPDHYKG-EHTYVPVTK---KGYWQFEMGDVLIDGETTGYCST---- 287 (514)
Q Consensus 217 ~~qg~i~~~~FSl~l~~~~-~~~~~G~L~fGg~D~s~~~g-~l~~~pl~~---~~~w~v~l~~i~vgg~~~~~~~~---- 287 (514)
..+ +. ++||+||.+.. +....|.|+||+. .++.| .+.|+|+.. ..+|.|.+++|.||++.+.+...
T Consensus 230 ~~~--~~-~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~ 304 (431)
T PLN03146 230 GSS--IG-GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNG 304 (431)
T ss_pred hHh--hC-CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCcccccc
Confidence 442 44 49999997532 2234799999984 44544 488999963 47999999999999988764322
Q ss_pred --CceEEEcCCCCCcccCHHHHHHHHHHhccCcccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCCcccc
Q 010251 288 --GCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSM 365 (514)
Q Consensus 288 --~~~aiiDTGTs~i~lp~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 365 (514)
...+||||||++++||+++|++|.+++.+. +......
T Consensus 305 ~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~----------------------~~~~~~~------------------- 343 (431)
T PLN03146 305 VEEGNIIIDSGTTLTLLPSDFYSELESAVEEA----------------------IGGERVS------------------- 343 (431)
T ss_pred CCCCcEEEeCCccceecCHHHHHHHHHHHHHH----------------------hccccCC-------------------
Confidence 247999999999999999999998887544 0000000
Q ss_pred cceeeeccCCCCCCCCCCCcccchhhhHHHHHHHHHHhhchhhHHHHhhhhccccCCCCCCCCeeeeCCCC---CCCCcE
Q 010251 366 GIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNL---SSMPNV 442 (514)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~---~~~P~l 442 (514)
. ...+..+|... ..+|+|
T Consensus 344 ----------------------------------------------------------~-~~~~~~~C~~~~~~~~~P~i 364 (431)
T PLN03146 344 ----------------------------------------------------------D-PQGLLSLCYSSTSDIKLPII 364 (431)
T ss_pred ----------------------------------------------------------C-CCCCCCccccCCCCCCCCeE
Confidence 0 00011233321 368999
Q ss_pred EEEECCEEEEeCcCcceEEeccCccceeEeeeEecccCCCCCCeeEecHhhhcceEEEEECCCCeEEEEec
Q 010251 443 SFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 513 (514)
Q Consensus 443 ~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIGfa~a 513 (514)
+|+|+|+++.|+|++|+++..++ ..|+. +... .+.||||+.|||++|++||++++|||||++
T Consensus 365 ~~~F~Ga~~~l~~~~~~~~~~~~--~~Cl~-~~~~------~~~~IlG~~~q~~~~vvyDl~~~~igFa~~ 426 (431)
T PLN03146 365 TAHFTGADVKLQPLNTFVKVSED--LVCFA-MIPT------SSIAIFGNLAQMNFLVGYDLESKTVSFKPT 426 (431)
T ss_pred EEEECCCeeecCcceeEEEcCCC--cEEEE-EecC------CCceEECeeeEeeEEEEEECCCCEEeeecC
Confidence 99999999999999999976543 57985 3321 236999999999999999999999999986
No 17
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.8e-49 Score=405.96 Aligned_cols=283 Identities=29% Similarity=0.458 Sum_probs=235.7
Q ss_pred ceEEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccc--cCCcccCCCCCceeec----------------CeEEE
Q 010251 87 AQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCY--FHSKYKSSHSSTYKRN----------------GTSAA 148 (514)
Q Consensus 87 ~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~--~~~~f~~~~SsT~~~~----------------~~~~~ 148 (514)
.+|+++|+||||||+++|+|||||+++||+|..|. .|. .++.|+|++|+|++.. .|.|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~---~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK---NCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC---CcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEE
Confidence 47999999999999999999999999999999996 565 3578999999999863 57999
Q ss_pred EEeccce-EEEEEEEEEEEECCEEec-------ceeEEEEEecccccccccccceEEeecccccccCCCCchHHHHHHcC
Q 010251 149 IQYGTGA-ISGFFSQDNVKVGDLVVK-------NQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQG 220 (514)
Q Consensus 149 ~~Yg~gs-~~G~~~~D~v~igg~~v~-------~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg 220 (514)
+.|++|+ +.|.++.|+|+|++..+. ++.|||+....+ .|.....+||||||+...+. ..+.+..|++++
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~ 155 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNG--LPTPIILLFTKR 155 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccc--cCchhHHHHHhc
Confidence 9999997 799999999999986553 467999887654 24455789999999986542 233455578887
Q ss_pred CCCC--CEEEEEecCCCCCCCCcEEEECCcCCCCcc----------cceEEEecccCCceEEEEceEEECCee-ecccCC
Q 010251 221 LVKE--PVFSFWLNRDIEGEEGGEIVFGGVDPDHYK----------GEHTYVPVTKKGYWQFEMGDVLIDGET-TGYCST 287 (514)
Q Consensus 221 ~i~~--~~FSl~l~~~~~~~~~G~L~fGg~D~s~~~----------g~l~~~pl~~~~~w~v~l~~i~vgg~~-~~~~~~ 287 (514)
.+.. ++||+||.+. .|.|+|||+|++++. +++.|+|+....+|.|.+++|+++++. ......
T Consensus 156 ~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~ 230 (326)
T cd06096 156 PKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTK 230 (326)
T ss_pred ccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceeccc
Confidence 7664 9999999864 799999999999987 889999998889999999999999886 112346
Q ss_pred CceEEEcCCCCCcccCHHHHHHHHHHhccCcccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCCcccccc
Q 010251 288 GCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGI 367 (514)
Q Consensus 288 ~~~aiiDTGTs~i~lp~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 367 (514)
...++|||||++++||++++++|.++
T Consensus 231 ~~~aivDSGTs~~~lp~~~~~~l~~~------------------------------------------------------ 256 (326)
T cd06096 231 GLGMLVDSGSTLSHFPEDLYNKINNF------------------------------------------------------ 256 (326)
T ss_pred CCCEEEeCCCCcccCCHHHHHHHHhh------------------------------------------------------
Confidence 77899999999999999999887542
Q ss_pred eeeeccCCCCCCCCCCCcccchhhhHHHHHHHHHHhhchhhHHHHhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEEC
Q 010251 368 ESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIG 447 (514)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fg 447 (514)
+|+|+|+|+
T Consensus 257 -----------------------------------------------------------------------~P~i~~~f~ 265 (326)
T cd06096 257 -----------------------------------------------------------------------FPTITIIFE 265 (326)
T ss_pred -----------------------------------------------------------------------cCcEEEEEc
Confidence 289999997
Q ss_pred -CEEEEeCcCcceEEeccCccceeEeeeEecccCCCCCCeeEecHhhhcceEEEEECCCCeEEEEecC
Q 010251 448 -GKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 514 (514)
Q Consensus 448 -g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIGfa~a~ 514 (514)
|++++++|++|+++.... .|...+.. ..+.||||++|||++|++||++++|||||++.
T Consensus 266 ~g~~~~i~p~~y~~~~~~~---~c~~~~~~------~~~~~ILG~~flr~~y~vFD~~~~riGfa~~~ 324 (326)
T cd06096 266 NNLKIDWKPSSYLYKKESF---WCKGGEKS------VSNKPILGASFFKNKQIIFDLDNNRIGFVESN 324 (326)
T ss_pred CCcEEEECHHHhccccCCc---eEEEEEec------CCCceEEChHHhcCcEEEEECcCCEEeeEcCC
Confidence 899999999999875433 46655542 22579999999999999999999999999873
No 18
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=5.3e-49 Score=396.73 Aligned_cols=278 Identities=33% Similarity=0.550 Sum_probs=240.3
Q ss_pred eEEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeecCeEEEEEeccc-eEEEEEEEEEEE
Q 010251 88 QYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTG-AISGFFSQDNVK 166 (514)
Q Consensus 88 ~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~g-s~~G~~~~D~v~ 166 (514)
.|+++|+||||+|+++|++||||+++||+ .|.+.|++| ++.|.+++|+|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------~~~~~Y~~g~~~~G~~~~D~v~ 52 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------DFSISYGDGTSASGTWGTDTVS 52 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------eeEEEeccCCcEEEEEEEEEEE
Confidence 69999999999999999999999999996 588899995 589999999999
Q ss_pred ECCEEecceeEEEEEecccccccccccceEEeeccccccc-----CCCCchHHHHHHcCCCCCCEEEEEecCCCCCCCCc
Q 010251 167 VGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI-----GKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGG 241 (514)
Q Consensus 167 igg~~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~-----~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G 241 (514)
+++..++++.|||+... ...+||||||+...+. ...++++++|.+||.|++++||+||.+.. ...|
T Consensus 53 ~g~~~~~~~~fg~~~~~-------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g 123 (295)
T cd05474 53 IGGATVKNLQFAVANST-------SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTG 123 (295)
T ss_pred ECCeEecceEEEEEecC-------CCCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCce
Confidence 99999999999999873 2468999999988743 34567999999999999999999998753 2379
Q ss_pred EEEECCcCCCCcccceEEEecccC------CceEEEEceEEECCeeec--ccCCCceEEEcCCCCCcccCHHHHHHHHHH
Q 010251 242 EIVFGGVDPDHYKGEHTYVPVTKK------GYWQFEMGDVLIDGETTG--YCSTGCNAIADSGTSLLAGPTTIITQINHA 313 (514)
Q Consensus 242 ~L~fGg~D~s~~~g~l~~~pl~~~------~~w~v~l~~i~vgg~~~~--~~~~~~~aiiDTGTs~i~lp~~~~~~l~~~ 313 (514)
.|+|||+|+++|.|+++|+|+... .+|.|.+++|.+++.... .......++|||||+++++|.+++++|.++
T Consensus 124 ~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~ 203 (295)
T cd05474 124 SILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQ 203 (295)
T ss_pred eEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHH
Confidence 999999999999999999999754 789999999999998753 234567899999999999999999999999
Q ss_pred hccCcccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCCcccccceeeeccCCCCCCCCCCCcccchhhhH
Q 010251 314 IGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEM 393 (514)
Q Consensus 314 i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
+++..
T Consensus 204 ~~~~~--------------------------------------------------------------------------- 208 (295)
T cd05474 204 LGATY--------------------------------------------------------------------------- 208 (295)
T ss_pred hCCEE---------------------------------------------------------------------------
Confidence 87651
Q ss_pred HHHHHHHHHhhchhhHHHHhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECCEEEEeCcCcceEEecc--CccceeE
Q 010251 394 AVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGE--GVAAQCI 471 (514)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg~~~~l~~~~y~~~~~~--~~~~~C~ 471 (514)
....+.|.++|+.... |+|+|+|+|++++|++++|+++... .....|.
T Consensus 209 -----------------------------~~~~~~~~~~C~~~~~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~ 258 (295)
T cd05474 209 -----------------------------DSDEGLYVVDCDAKDD-GSLTFNFGGATISVPLSDLVLPASTDDGGDGACY 258 (295)
T ss_pred -----------------------------cCCCcEEEEeCCCCCC-CEEEEEECCeEEEEEHHHhEeccccCCCCCCCeE
Confidence 0013458899998766 9999999999999999999997642 3347899
Q ss_pred eeeEecccCCCCCCeeEecHhhhcceEEEEECCCCeEEEEec
Q 010251 472 SGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 513 (514)
Q Consensus 472 ~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIGfa~a 513 (514)
+.|+..+ . +.||||++|||++|++||.+++|||||+|
T Consensus 259 ~~i~~~~----~-~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 259 LGIQPST----S-DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EEEEeCC----C-CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 8888643 1 58999999999999999999999999997
No 19
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.3e-48 Score=394.95 Aligned_cols=287 Identities=25% Similarity=0.395 Sum_probs=223.6
Q ss_pred eEEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeecCeEEEEEeccce-EEEEEEEEEEE
Q 010251 88 QYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA-ISGFFSQDNVK 166 (514)
Q Consensus 88 ~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs-~~G~~~~D~v~ 166 (514)
+|+++|+||||||++.|++||||+++||+|..| |.|.++|++|+ ++|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------~~~~i~Yg~Gs~~~G~~~~D~v~ 56 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------CLYQVSYGDGSYTTGDLATDTLT 56 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------CeeeeEeCCCceEEEEEEEEEEE
Confidence 599999999999999999999999999976544 67999999998 58999999999
Q ss_pred ECCE-EecceeEEEEEecccccccccccceEEeecccccccCCCCchHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEEE
Q 010251 167 VGDL-VVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVF 245 (514)
Q Consensus 167 igg~-~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~f 245 (514)
|++. .++++.|||+....+. + ...+||||||+...+ +..++..+ .+++||+||.+.. ...+|+|+|
T Consensus 57 ig~~~~~~~~~Fg~~~~~~~~-~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~f 123 (299)
T cd05472 57 LGSSDVVPGFAFGCGHDNEGL-F--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSF 123 (299)
T ss_pred eCCCCccCCEEEECCccCCCc-c--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEe
Confidence 9998 8999999999876542 2 267999999987665 34455544 3589999998743 234899999
Q ss_pred CCcCCCCcccceEEEeccc----CCceEEEEceEEECCeeeccc---CCCceEEEcCCCCCcccCHHHHHHHHHHhccCc
Q 010251 246 GGVDPDHYKGEHTYVPVTK----KGYWQFEMGDVLIDGETTGYC---STGCNAIADSGTSLLAGPTTIITQINHAIGASG 318 (514)
Q Consensus 246 Gg~D~s~~~g~l~~~pl~~----~~~w~v~l~~i~vgg~~~~~~---~~~~~aiiDTGTs~i~lp~~~~~~l~~~i~~~~ 318 (514)
||+|++ .|++.|+|+.. ..+|.|++++|+||++.+... .....++|||||+++++|++++++|.+++.+..
T Consensus 124 Gg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~ 201 (299)
T cd05472 124 GAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAAM 201 (299)
T ss_pred CCcccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHHh
Confidence 999998 89999999965 369999999999999887642 245689999999999999999999999986540
Q ss_pred ccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCCcccccceeeeccCCCCCCCCCCCcccchhhhHHHHHH
Q 010251 319 VISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWM 398 (514)
Q Consensus 319 ~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (514)
.+.......
T Consensus 202 ----------------------~~~~~~~~~------------------------------------------------- 210 (299)
T cd05472 202 ----------------------AAYPRAPGF------------------------------------------------- 210 (299)
T ss_pred ----------------------ccCCCCCCC-------------------------------------------------
Confidence 000000000
Q ss_pred HHHHhhchhhHHHHhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEEC-CEEEEeCcCcceEEeccCccceeEeeeEec
Q 010251 399 QNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIG-GKVFDLAPNEYVLEVGEGVAAQCISGFTAF 477 (514)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fg-g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~ 477 (514)
+.-+.|+.. +|.....+|+|+|+|+ |+.++|+|++|+++.. .....|+ ++...
T Consensus 211 ---------------~~~~~C~~~---------~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~-~~~~~C~-~~~~~ 264 (299)
T cd05472 211 ---------------SILDTCYDL---------SGFRSVSVPTVSLHFQGGADVELDASGVLYPVD-DSSQVCL-AFAGT 264 (299)
T ss_pred ---------------CCCCccCcC---------CCCcCCccCCEEEEECCCCEEEeCcccEEEEec-CCCCEEE-EEeCC
Confidence 000012221 2333357999999996 8999999999998432 2236797 45432
Q ss_pred ccCCCCCCeeEecHhhhcceEEEEECCCCeEEEEec
Q 010251 478 DVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 513 (514)
Q Consensus 478 ~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIGfa~a 513 (514)
+ ..++.||||+.|||++|+|||++++|||||++
T Consensus 265 ~---~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~ 297 (299)
T cd05472 265 S---DDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPG 297 (299)
T ss_pred C---CCCCCEEEchHHccceEEEEECCCCEEeEecC
Confidence 2 13457999999999999999999999999986
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=4.2e-46 Score=372.18 Aligned_cols=227 Identities=48% Similarity=0.868 Sum_probs=199.8
Q ss_pred EEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCc--ccCCCCCceeecCeEEEEEeccceEEEEEEEEEEE
Q 010251 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSK--YKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVK 166 (514)
Q Consensus 89 Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~--f~~~~SsT~~~~~~~~~~~Yg~gs~~G~~~~D~v~ 166 (514)
|+++|.||||+|+++|++||||+++||+|..|. ...|..... |++..|+++....+.+.+.|++|++.|.++.|+|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~ 79 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT-SCSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVT 79 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC-ccccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEE
Confidence 789999999999999999999999999999996 223333333 89999999999999999999999999999999999
Q ss_pred ECCEEecceeEEEEEecccccccccccceEEeecccccccCCCCchHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEEEC
Q 010251 167 VGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIVFG 246 (514)
Q Consensus 167 igg~~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fG 246 (514)
+++..++++.|||+..... .+.....+||||||+...+.....+++++|.+++.|.+++||+||.+.......|.|+||
T Consensus 80 ~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~G 158 (283)
T cd05471 80 IGGLTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFG 158 (283)
T ss_pred ECCEEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEc
Confidence 9999999999999998764 344567899999999987766678899999999999999999999885322348999999
Q ss_pred CcCCCCcccceEEEeccc--CCceEEEEceEEECCeeecccCCCceEEEcCCCCCcccCHHHHHHHHHHhccC
Q 010251 247 GVDPDHYKGEHTYVPVTK--KGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 317 (514)
Q Consensus 247 g~D~s~~~g~l~~~pl~~--~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l~~~i~~~ 317 (514)
|+|++++.+++.|+|+.. ..+|.|.+++|.+++...........++|||||+++++|.+++++|.+++.+.
T Consensus 159 g~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~ 231 (283)
T cd05471 159 GIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAA 231 (283)
T ss_pred ccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCc
Confidence 999999999999999987 78999999999999974222456789999999999999999999999999876
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.5e-45 Score=364.76 Aligned_cols=248 Identities=28% Similarity=0.486 Sum_probs=210.3
Q ss_pred eEEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeecCeEEEEEeccce-EEEEEEEEEEE
Q 010251 88 QYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA-ISGFFSQDNVK 166 (514)
Q Consensus 88 ~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs-~~G~~~~D~v~ 166 (514)
+|+++|+||||||+++|+|||||+++||+| |.+.++|++|+ ++|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------~~~~~~Y~dg~~~~G~~~~D~v~ 53 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------CSYEYSYGDGSSTSGVLATETFT 53 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------CceEeEeCCCceeeeeEEEEEEE
Confidence 599999999999999999999999999975 45888999765 89999999999
Q ss_pred ECCE--EecceeEEEEEecccccccccccceEEeecccccccCCCCchHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEE
Q 010251 167 VGDL--VVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEEGGEIV 244 (514)
Q Consensus 167 igg~--~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~ 244 (514)
|++. .++++.|||+....+ +.....+||||||+...+ ++.+|..++ ++||+||.+..+....|+|+
T Consensus 54 ~g~~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~ 121 (265)
T cd05476 54 FGDSSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLI 121 (265)
T ss_pred ecCCCCccCCEEEEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEE
Confidence 9998 899999999998754 445678999999987654 667787776 79999998753234589999
Q ss_pred ECCcCCCCcccceEEEeccc----CCceEEEEceEEECCeeecc--------cCCCceEEEcCCCCCcccCHHHHHHHHH
Q 010251 245 FGGVDPDHYKGEHTYVPVTK----KGYWQFEMGDVLIDGETTGY--------CSTGCNAIADSGTSLLAGPTTIITQINH 312 (514)
Q Consensus 245 fGg~D~s~~~g~l~~~pl~~----~~~w~v~l~~i~vgg~~~~~--------~~~~~~aiiDTGTs~i~lp~~~~~~l~~ 312 (514)
|||+|++ +.|++.|+|+.. .++|.+.+++|.|+++.+.+ ......++|||||+++++|++
T Consensus 122 fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~------- 193 (265)
T cd05476 122 LGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDP------- 193 (265)
T ss_pred ECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcc-------
Confidence 9999999 999999999965 58999999999999987642 345678999999999999954
Q ss_pred HhccCcccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCCcccccceeeeccCCCCCCCCCCCcccchhhh
Q 010251 313 AIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACE 392 (514)
Q Consensus 313 ~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (514)
T Consensus 194 -------------------------------------------------------------------------------- 193 (265)
T cd05476 194 -------------------------------------------------------------------------------- 193 (265)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhchhhHHHHhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEEC-CEEEEeCcCcceEEeccCccceeE
Q 010251 393 MAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIG-GKVFDLAPNEYVLEVGEGVAAQCI 471 (514)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fg-g~~~~l~~~~y~~~~~~~~~~~C~ 471 (514)
.+|+|+|+|+ ++++.+++++|+++... ...|+
T Consensus 194 ---------------------------------------------~~P~i~~~f~~~~~~~i~~~~y~~~~~~--~~~C~ 226 (265)
T cd05476 194 ---------------------------------------------AYPDLTLHFDGGADLELPPENYFVDVGE--GVVCL 226 (265)
T ss_pred ---------------------------------------------ccCCEEEEECCCCEEEeCcccEEEECCC--CCEEE
Confidence 1288999998 89999999999996433 36897
Q ss_pred eeeEecccCCCCCCeeEecHhhhcceEEEEECCCCeEEEEecC
Q 010251 472 SGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 514 (514)
Q Consensus 472 ~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIGfa~a~ 514 (514)
. +... ...+.||||++|||++|++||.+++|||||++.
T Consensus 227 ~-~~~~----~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~ 264 (265)
T cd05476 227 A-ILSS----SSGGVSILGNIQQQNFLVEYDLENSRLGFAPAD 264 (265)
T ss_pred E-EecC----CCCCcEEEChhhcccEEEEEECCCCEEeeecCC
Confidence 5 4322 244689999999999999999999999999873
No 22
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=4.8e-45 Score=364.19 Aligned_cols=258 Identities=23% Similarity=0.428 Sum_probs=213.0
Q ss_pred ceEEEEEEEcCCCceEEEEecCCCCceeeeCC-CCCCCcccccCCcccCCCCCceeecCeEEEEEeccc-eEEEEEEEEE
Q 010251 87 AQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSA-KCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTG-AISGFFSQDN 164 (514)
Q Consensus 87 ~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~-~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~g-s~~G~~~~D~ 164 (514)
++|+++|.||||||++.|++||||+++||+|. .|. .| .|.|.++|+++ ++.|.+++|+
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~---~c-----------------~c~~~i~Ygd~~~~~G~~~~D~ 60 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT---GC-----------------QCDYEIEYADGGSSMGVLVTDI 60 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC---CC-----------------cCccEeEeCCCCceEEEEEEEE
Confidence 36999999999999999999999999999984 574 45 46799999965 5899999999
Q ss_pred EEECC----EEecceeEEEEEeccccc-ccccccceEEeecccccccCCCCchHHHHHHcCCCCCCEEEEEecCCCCCCC
Q 010251 165 VKVGD----LVVKNQDFIEATKEASIT-FLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDIEGEE 239 (514)
Q Consensus 165 v~igg----~~v~~~~fg~~~~~~~~~-~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FSl~l~~~~~~~~ 239 (514)
|++++ ..++++.|||+....+.. +.....+||||||+...+ ++.+|.+++.| +++||+||.+. .
T Consensus 61 v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~~----~ 129 (273)
T cd05475 61 FSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKIS------LPSQLASQGII-KNVIGHCLSSN----G 129 (273)
T ss_pred EEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCC------HHHHHHhcCCc-CceEEEEccCC----C
Confidence 99953 577899999998654421 234568999999987654 78999999999 89999999863 2
Q ss_pred CcEEEECCcCCCCcccceEEEecccC---CceEEEEceEEECCeeecccCCCceEEEcCCCCCcccCHHHHHHHHHHhcc
Q 010251 240 GGEIVFGGVDPDHYKGEHTYVPVTKK---GYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGA 316 (514)
Q Consensus 240 ~G~L~fGg~D~s~~~g~l~~~pl~~~---~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l~~~i~~ 316 (514)
+|.|+|| |..++.|++.|+|+.+. ++|.|++.+|+||++... .....++|||||+++++|+++|
T Consensus 130 ~g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--~~~~~~ivDTGTt~t~lp~~~y--------- 196 (273)
T cd05475 130 GGFLFFG--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--GKGLEVVFDSGSSYTYFNAQAY--------- 196 (273)
T ss_pred CeEEEEC--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc--CCCceEEEECCCceEEcCCccc---------
Confidence 6899998 45667889999999764 899999999999998543 4567899999999999996521
Q ss_pred CcccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCCcccccceeeeccCCCCCCCCCCCcccchhhhHHHH
Q 010251 317 SGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVI 396 (514)
Q Consensus 317 ~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (514)
T Consensus 197 -------------------------------------------------------------------------------- 196 (273)
T cd05475 197 -------------------------------------------------------------------------------- 196 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhchhhHHHHhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECC----EEEEeCcCcceEEeccCccceeEe
Q 010251 397 WMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGG----KVFDLAPNEYVLEVGEGVAAQCIS 472 (514)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg----~~~~l~~~~y~~~~~~~~~~~C~~ 472 (514)
+|+|+|+|++ ++++|+|++|++....+ ..|+.
T Consensus 197 ------------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~--~~Cl~ 232 (273)
T cd05475 197 ------------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKG--NVCLG 232 (273)
T ss_pred ------------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCC--CEEEE
Confidence 5889999976 79999999999875433 57987
Q ss_pred eeEecccCCCCCCeeEecHhhhcceEEEEECCCCeEEEEecC
Q 010251 473 GFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 514 (514)
Q Consensus 473 ~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIGfa~a~ 514 (514)
.+...+. ..++.||||+.|||++|++||++++|||||++.
T Consensus 233 ~~~~~~~--~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~ 272 (273)
T cd05475 233 ILNGSEI--GLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSD 272 (273)
T ss_pred EecCCCc--CCCceEEECceEEEeeEEEEECcCCEeCcccCC
Confidence 6654321 234589999999999999999999999999874
No 23
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1e-41 Score=352.27 Aligned_cols=313 Identities=17% Similarity=0.248 Sum_probs=230.6
Q ss_pred EcCCCce-EEEEecCCCCceeeeCCC----------CCCCcccccCCcccCCC------CCceeecCeEEEEE-eccce-
Q 010251 95 IGTPSQT-FTVIFDTGSSNLWVPSAK----------CYFSVSCYFHSKYKSSH------SSTYKRNGTSAAIQ-YGTGA- 155 (514)
Q Consensus 95 IGtPpQ~-~~v~lDTGSs~~WV~~~~----------C~~~~~C~~~~~f~~~~------SsT~~~~~~~~~~~-Yg~gs- 155 (514)
+|||-.+ +.|++||||+++||+|.+ |. +..|..+..|++.. ++......|.|... |++|+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~-s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~ 80 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCS-SSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGEC 80 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcC-ChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcE
Confidence 5788777 999999999999997764 43 56777666675542 22333345777554 77885
Q ss_pred EEEEEEEEEEEECC--------EEecceeEEEEEecccccccccccceEEeecccccccCCCCchHHHHHHcCCCCCCEE
Q 010251 156 ISGFFSQDNVKVGD--------LVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVF 227 (514)
Q Consensus 156 ~~G~~~~D~v~igg--------~~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~F 227 (514)
..|++++|+|+|+. ..++++.|||+.......+ ...++||||||+..++ +..||..++. .+++|
T Consensus 81 t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~F 152 (362)
T cd05489 81 ATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARKF 152 (362)
T ss_pred eeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcce
Confidence 78999999999963 3788999999987432122 2348999999999887 4556766655 46899
Q ss_pred EEEecCCCCCCCCcEEEECCcCCCCcc------cceEEEecccC----CceEEEEceEEECCeeeccc--------CCCc
Q 010251 228 SFWLNRDIEGEEGGEIVFGGVDPDHYK------GEHTYVPVTKK----GYWQFEMGDVLIDGETTGYC--------STGC 289 (514)
Q Consensus 228 Sl~l~~~~~~~~~G~L~fGg~D~s~~~------g~l~~~pl~~~----~~w~v~l~~i~vgg~~~~~~--------~~~~ 289 (514)
|+||.+.. ..+|.|+||+.++.++. +++.|+|+..+ .+|.|++++|+||++.+.++ .+..
T Consensus 153 S~CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~ 230 (362)
T cd05489 153 ALCLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPG 230 (362)
T ss_pred EEEeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCC
Confidence 99998753 23799999999988774 78999999753 79999999999999887642 2346
Q ss_pred eEEEcCCCCCcccCHHHHHHHHHHhccCcccccchhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCCccccccee
Q 010251 290 NAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIES 369 (514)
Q Consensus 290 ~aiiDTGTs~i~lp~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 369 (514)
.++|||||++++||+++|++|.+++.+. +........-.
T Consensus 231 g~iiDSGTs~t~lp~~~y~~l~~a~~~~----------------------~~~~~~~~~~~------------------- 269 (362)
T cd05489 231 GVKLSTVVPYTVLRSDIYRAFTQAFAKA----------------------TARIPRVPAAA------------------- 269 (362)
T ss_pred cEEEecCCceEEECHHHHHHHHHHHHHH----------------------hcccCcCCCCC-------------------
Confidence 7999999999999999999999998654 00000000000
Q ss_pred eeccCCCCCCCCCCCcccchhhhHHHHHHHHHHhhchhhHHHHhhhhccccCCCCCCCCeeeeCCCCCCCCcEEEEECC-
Q 010251 370 VIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGG- 448 (514)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fgg- 448 (514)
...+.|+.... ...|+....+|+|+|+|+|
T Consensus 270 --------------------------------------------~~~~~C~~~~~-----~~~~~~~~~~P~it~~f~g~ 300 (362)
T cd05489 270 --------------------------------------------VFPELCYPASA-----LGNTRLGYAVPAIDLVLDGG 300 (362)
T ss_pred --------------------------------------------CCcCccccCCC-----cCCcccccccceEEEEEeCC
Confidence 00124443321 1233334579999999965
Q ss_pred -EEEEeCcCcceEEeccCccceeEeeeEecccCCCCCCeeEecHhhhcceEEEEECCCCeEEEEec
Q 010251 449 -KVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 513 (514)
Q Consensus 449 -~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIGfa~a 513 (514)
++++|+|++|+++..++ ..|+ +|...+.. .++.||||+.|||++|++||.+++|||||++
T Consensus 301 g~~~~l~~~ny~~~~~~~--~~Cl-~f~~~~~~--~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 301 GVNWTIFGANSMVQVKGG--VACL-AFVDGGSE--PRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred CeEEEEcCCceEEEcCCC--cEEE-EEeeCCCC--CCceEEEeeheecceEEEEECCCCEeecccC
Confidence 99999999999986543 6896 57654421 2458999999999999999999999999975
No 24
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.88 E-value=5.3e-22 Score=170.14 Aligned_cols=108 Identities=57% Similarity=0.887 Sum_probs=95.5
Q ss_pred EEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcc-cCCCCCceeecCeEEEEEeccceEEEEEEEEEEEECC
Q 010251 91 GEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKY-KSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVKVGD 169 (514)
Q Consensus 91 ~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f-~~~~SsT~~~~~~~~~~~Yg~gs~~G~~~~D~v~igg 169 (514)
++|.||||||++.|+|||||+++||+|..|. ...|..+..| +++.|++++...+.|.+.|++|++.|.++.|+|+|++
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~-~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~ 79 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ-SLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGD 79 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC-CcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECC
Confidence 4799999999999999999999999999985 3344455666 9999999999999999999999999999999999999
Q ss_pred EEecceeEEEEEecccccccccccceEEee
Q 010251 170 LVVKNQDFIEATKEASITFLAAKFDGILGL 199 (514)
Q Consensus 170 ~~v~~~~fg~~~~~~~~~~~~~~~~GIlGL 199 (514)
..++++.||++....+..+.....+|||||
T Consensus 80 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 80 IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEECCEEEEEEEecCCccccccccccccCC
Confidence 999999999999886644445678999997
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.85 E-value=1.2e-20 Score=173.85 Aligned_cols=136 Identities=34% Similarity=0.523 Sum_probs=106.4
Q ss_pred EEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeec----------------------CeE
Q 010251 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRN----------------------GTS 146 (514)
Q Consensus 89 Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~----------------------~~~ 146 (514)
|+++|.||||+|++.|++||||+.+|++| ..+.|+|.+|+||+.. .|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 89999999999999999999999999987 2467888888888762 268
Q ss_pred EEEEeccce-EEEEEEEEEEEECC-----EEecceeEEEEEecccccccccccceEEeecccccccCCCCchHHHHHHcC
Q 010251 147 AAIQYGTGA-ISGFFSQDNVKVGD-----LVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQG 220 (514)
Q Consensus 147 ~~~~Yg~gs-~~G~~~~D~v~igg-----~~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~qg 220 (514)
|.+.|++++ +.|.+++|+++++. ..+.++.|||+....+. ....+||||||+...+ ++.||.++
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~---~~~~~GilGLg~~~~S------l~sQl~~~- 140 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGL---FYGADGILGLGRGPLS------LPSQLASS- 140 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTS---STTEEEEEE-SSSTTS------HHHHHHHH-
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccC---CcCCCcccccCCCccc------HHHHHHHh-
Confidence 999999887 79999999999975 56888999999987653 2378999999998877 78888888
Q ss_pred CCCCCEEEEEecCCCCCCCCcEEEECC
Q 010251 221 LVKEPVFSFWLNRDIEGEEGGEIVFGG 247 (514)
Q Consensus 221 ~i~~~~FSl~l~~~~~~~~~G~L~fGg 247 (514)
..++||+||.+ .+....|.|+||+
T Consensus 141 --~~~~FSyCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 --SGNKFSYCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp ----SEEEEEB-S--SSSSEEEEEECS
T ss_pred --cCCeEEEECCC-CCCCCCEEEEeCc
Confidence 56899999998 2234589999995
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.78 E-value=2.3e-18 Score=158.28 Aligned_cols=150 Identities=23% Similarity=0.422 Sum_probs=103.4
Q ss_pred ceEEEEceEEECCeeecccCC-------CceEEEcCCCCCcccCHHHHHHHHHHhccCcccccchhhHHhhhhhHHHHHH
Q 010251 267 YWQFEMGDVLIDGETTGYCST-------GCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEML 339 (514)
Q Consensus 267 ~w~v~l~~i~vgg~~~~~~~~-------~~~aiiDTGTs~i~lp~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~ 339 (514)
+|.|++++|+||++.+.+... ...++|||||++++||+++|++|.+++.+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~---------------------- 58 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQ---------------------- 58 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHH----------------------
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHH----------------------
Confidence 588999999999999876543 468999999999999999999999998765
Q ss_pred HhccC---cccccccCcccccCCCCcccccceeeeccCCCCCCCCCCCcccchhhhHHHHHHHHHHhhchhhHHHHhhhh
Q 010251 340 IAETQ---PQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKLRRNETADQILNYVN 416 (514)
Q Consensus 340 ~~~~~---~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (514)
+.... ....-..+
T Consensus 59 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 74 (161)
T PF14541_consen 59 MGAPGVSREAPPFSGF---------------------------------------------------------------- 74 (161)
T ss_dssp HHTCT--CEE---TT-----------------------------------------------------------------
T ss_pred hhhcccccccccCCCC----------------------------------------------------------------
Confidence 00100 01111222
Q ss_pred ccccCCCCCCCCeeeeCCCCCCCCcEEEEEC-CEEEEeCcCcceEEeccCccceeEeeeEecccCCCCCCeeEecHhhhc
Q 010251 417 QLCDRLPSPNGESAVDCDNLSSMPNVSFTIG-GKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMG 495 (514)
Q Consensus 417 ~~c~~~~~~~~~~~~~C~~~~~~P~l~f~fg-g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~ 495 (514)
++|++.+... .+ .....+|+|+|+|. |+.++|+|++|+++..++ ..|+.... . ....++..|||..+|+
T Consensus 75 ~~Cy~~~~~~----~~-~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~--~~Cla~~~-~--~~~~~~~~viG~~~~~ 144 (161)
T PF14541_consen 75 DLCYNLSSFG----VN-RDWAKFPTITLHFEGGADLTLPPENYFVQVSPG--VFCLAFVP-S--DADDDGVSVIGNFQQQ 144 (161)
T ss_dssp S-EEEGGCS-----EE-TTEESS--EEEEETTSEEEEE-HHHHEEEECTT--EEEESEEE-E--TSTTSSSEEE-HHHCC
T ss_pred Cceeeccccc----cc-cccccCCeEEEEEeCCcceeeeccceeeeccCC--CEEEEEEc-c--CCCCCCcEEECHHHhc
Confidence 3555543311 01 11247999999995 899999999999987644 78996443 3 1234468899999999
Q ss_pred ceEEEEECCCCeEEEEe
Q 010251 496 RYHTVFDYGNLSIGFAE 512 (514)
Q Consensus 496 ~~y~vfD~~~~rIGfa~ 512 (514)
+++++||++++||||+|
T Consensus 145 ~~~v~fDl~~~~igF~~ 161 (161)
T PF14541_consen 145 NYHVVFDLENGRIGFAP 161 (161)
T ss_dssp TEEEEEETTTTEEEEEE
T ss_pred CcEEEEECCCCEEEEeC
Confidence 99999999999999997
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.89 E-value=3.7e-05 Score=63.38 Aligned_cols=91 Identities=20% Similarity=0.310 Sum_probs=64.1
Q ss_pred eEEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeecCeEEEEEeccce-EEEEEEEEEEE
Q 010251 88 QYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA-ISGFFSQDNVK 166 (514)
Q Consensus 88 ~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs-~~G~~~~D~v~ 166 (514)
.|++++.||. +++++++|||++.+|+...... .+. . . ........+...+|. .......+.++
T Consensus 2 ~~~v~v~i~~--~~~~~llDTGa~~s~i~~~~~~---~l~---~--~------~~~~~~~~~~~~~G~~~~~~~~~~~i~ 65 (96)
T cd05483 2 HFVVPVTING--QPVRFLLDTGASTTVISEELAE---RLG---L--P------LTLGGKVTVQTANGRVRAARVRLDSLQ 65 (96)
T ss_pred cEEEEEEECC--EEEEEEEECCCCcEEcCHHHHH---HcC---C--C------ccCCCcEEEEecCCCccceEEEcceEE
Confidence 5899999995 9999999999999999764321 111 0 0 112234556666776 34555588999
Q ss_pred ECCEEecceeEEEEEecccccccccccceEEeec
Q 010251 167 VGDLVVKNQDFIEATKEASITFLAAKFDGILGLG 200 (514)
Q Consensus 167 igg~~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg 200 (514)
+|+..+.++.+........ ..+||||+.
T Consensus 66 ig~~~~~~~~~~v~d~~~~------~~~gIlG~d 93 (96)
T cd05483 66 IGGITLRNVPAVVLPGDAL------GVDGLLGMD 93 (96)
T ss_pred ECCcEEeccEEEEeCCccc------CCceEeChH
Confidence 9999999888877754321 569999986
No 28
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=97.66 E-value=2.9e-05 Score=53.33 Aligned_cols=38 Identities=26% Similarity=0.646 Sum_probs=35.9
Q ss_pred ccchhhhHHHHHHHHHHhhchhhHHHHhhhhccccCCC
Q 010251 386 AMCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLP 423 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 423 (514)
..|..|++++.+++++|..|.|+++|..++++.|..+|
T Consensus 2 ~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 2 DECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred CcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 47999999999999999999999999999999999775
No 29
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.19 E-value=0.0023 Score=55.78 Aligned_cols=101 Identities=20% Similarity=0.349 Sum_probs=66.6
Q ss_pred EeceeccCceEEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeecCeEEEEEeccceE-E
Q 010251 79 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAI-S 157 (514)
Q Consensus 79 ~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~-~ 157 (514)
+++.-..++.|++++.|.. +++.+++|||++.+.++...-. .-..++.. ......+.-.+|.. .
T Consensus 2 ~~i~~~~~g~~~v~~~InG--~~~~flVDTGAs~t~is~~~A~-------~Lgl~~~~------~~~~~~~~ta~G~~~~ 66 (121)
T TIGR02281 2 VQLAKDGDGHFYATGRVNG--RNVRFLVDTGATSVALNEEDAQ-------RLGLDLNR------LGYTVTVSTANGQIKA 66 (121)
T ss_pred EEEEEcCCCeEEEEEEECC--EEEEEEEECCCCcEEcCHHHHH-------HcCCCccc------CCceEEEEeCCCcEEE
Confidence 4555566889999999987 8999999999999988543210 00011111 12223334445654 3
Q ss_pred EEEEEEEEEECCEEecceeEEEEEecccccccccccceEEeecc
Q 010251 158 GFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGF 201 (514)
Q Consensus 158 G~~~~D~v~igg~~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg~ 201 (514)
....-|.+.+|+..+.|..+.++.... ..+|+||+.+
T Consensus 67 ~~~~l~~l~iG~~~~~nv~~~v~~~~~-------~~~~LLGm~f 103 (121)
T TIGR02281 67 ARVTLDRVAIGGIVVNDVDAMVAEGGA-------LSESLLGMSF 103 (121)
T ss_pred EEEEeCEEEECCEEEeCcEEEEeCCCc-------CCceEcCHHH
Confidence 455889999999999999977764321 1279999963
No 30
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.54 E-value=0.015 Score=46.96 Aligned_cols=88 Identities=19% Similarity=0.280 Sum_probs=53.5
Q ss_pred EEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeecCeEEEEEeccce-EEEEEEEEEEEECC
Q 010251 91 GEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA-ISGFFSQDNVKVGD 169 (514)
Q Consensus 91 ~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs-~~G~~~~D~v~igg 169 (514)
+++.|+. +++++++|||++.+.+....+. .-...... ......+.-.+|. .......+.+++|+
T Consensus 1 V~v~vng--~~~~~liDTGa~~~~i~~~~~~-------~l~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~i~ig~ 65 (90)
T PF13650_consen 1 VPVKVNG--KPVRFLIDTGASISVISRSLAK-------KLGLKPRP------KSVPISVSGAGGSVTVYRGRVDSITIGG 65 (90)
T ss_pred CEEEECC--EEEEEEEcCCCCcEEECHHHHH-------HcCCCCcC------CceeEEEEeCCCCEEEEEEEEEEEEECC
Confidence 3577876 8999999999998887643321 00011111 1111233333444 34555666899999
Q ss_pred EEecceeEEEEEecccccccccccceEEeec
Q 010251 170 LVVKNQDFIEATKEASITFLAAKFDGILGLG 200 (514)
Q Consensus 170 ~~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg 200 (514)
..+.+..|-.... ....+||||+-
T Consensus 66 ~~~~~~~~~v~~~-------~~~~~~iLG~d 89 (90)
T PF13650_consen 66 ITLKNVPFLVVDL-------GDPIDGILGMD 89 (90)
T ss_pred EEEEeEEEEEECC-------CCCCEEEeCCc
Confidence 9888888766551 24568999973
No 31
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=95.69 E-value=0.12 Score=52.66 Aligned_cols=196 Identities=21% Similarity=0.274 Sum_probs=102.5
Q ss_pred EEEEEEcCCC----ceE-EEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeecCeEE--EEEeccceEEEEEEE
Q 010251 90 FGEVSIGTPS----QTF-TVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSA--AIQYGTGAISGFFSQ 162 (514)
Q Consensus 90 ~~~i~IGtPp----Q~~-~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~--~~~Yg~gs~~G~~~~ 162 (514)
++.|+|=-|. |++ +|+|||||.-+=+..+.-... -........+ .+... -..|.+|..=|-+.+
T Consensus 25 ~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~~----l~~~Lp~~t~-----~g~~laEC~~F~sgytWGsVr~ 95 (370)
T PF11925_consen 25 TVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPSS----LAGSLPQQTG-----GGAPLAECAQFASGYTWGSVRT 95 (370)
T ss_pred eeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhchh----hhccCCcccC-----CCcchhhhhhccCcccccceEE
Confidence 5666665443 666 599999998776654321000 0000111111 11111 246777776788899
Q ss_pred EEEEECCEEecceeEEEEEecc-----------cc---cccccccceEEeecccccccC----------------CC-Cc
Q 010251 163 DNVKVGDLVVKNQDFIEATKEA-----------SI---TFLAAKFDGILGLGFQEISIG----------------KA-IP 211 (514)
Q Consensus 163 D~v~igg~~v~~~~fg~~~~~~-----------~~---~~~~~~~~GIlGLg~~~~s~~----------------~~-~~ 211 (514)
..|+|++....++.+.++.+.. +. .......+||||+|.....-. .. .-
T Consensus 96 AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~sa~~~~YY~C~~~~sC 175 (370)
T PF11925_consen 96 ADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQSALPGNYYSCPSGGSC 175 (370)
T ss_pred EEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhcccCCCceEECCCCCCe
Confidence 9999999766666666664420 10 111346799999997543220 00 00
Q ss_pred hHHHHHHcCCCCCCEEEEEecCCC------------CCCCCcEEEEC-CcCCCC-cccceEEEecccCCceEEEEceEEE
Q 010251 212 VWYNMLDQGLVKEPVFSFWLNRDI------------EGEEGGEIVFG-GVDPDH-YKGEHTYVPVTKKGYWQFEMGDVLI 277 (514)
Q Consensus 212 ~~~~L~~qg~i~~~~FSl~l~~~~------------~~~~~G~L~fG-g~D~s~-~~g~l~~~pl~~~~~w~v~l~~i~v 277 (514)
.-..+-...++..|+..|-.+.+. .....|.|+|| |..... ..+..+..+....++..- ..
T Consensus 176 t~t~v~~~~QV~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgTQsNN~l~~~~~~~~~~~~G~~tt-----~~ 250 (370)
T PF11925_consen 176 TSTTVPLAQQVANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGTQSNNALPSGATVLTTDSNGDFTT-----TF 250 (370)
T ss_pred ecccchhhhcccCcccccCccCCeEEEecCCCCCCCCccceEEEEEecCCcccCcccccceEEeecCCceEEE-----Ee
Confidence 001111112355566555322211 23357999998 322221 122244555555565332 23
Q ss_pred CCeeecccCCCceEEEcCCCCCcccCHH
Q 010251 278 DGETTGYCSTGCNAIADSGTSLLAGPTT 305 (514)
Q Consensus 278 gg~~~~~~~~~~~aiiDTGTs~i~lp~~ 305 (514)
+|.... ...||||+...++|+.
T Consensus 251 ~G~t~~------~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 251 NGQTYS------ASFFDSGSNGYFFPDS 272 (370)
T ss_pred cCceee------eeeEecCCceeeccCC
Confidence 343322 3499999999998854
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.30 E-value=0.11 Score=45.32 Aligned_cols=90 Identities=21% Similarity=0.283 Sum_probs=57.3
Q ss_pred CceEEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeecCeEEE-EEeccc--eEEEEEEE
Q 010251 86 DAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAA-IQYGTG--AISGFFSQ 162 (514)
Q Consensus 86 ~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~-~~Yg~g--s~~G~~~~ 162 (514)
...+++++.|+. +++.+++|||++..++....+. .+.-. .... ..+. ...+.| ...|....
T Consensus 14 ~~~~~v~~~Ing--~~~~~LvDTGAs~s~Is~~~a~---~lgl~----~~~~-------~~~~~~~~g~g~~~~~g~~~~ 77 (124)
T cd05479 14 VPMLYINVEING--VPVKAFVDSGAQMTIMSKACAE---KCGLM----RLID-------KRFQGIAKGVGTQKILGRIHL 77 (124)
T ss_pred eeEEEEEEEECC--EEEEEEEeCCCceEEeCHHHHH---HcCCc----cccC-------cceEEEEecCCCcEEEeEEEE
Confidence 456899999997 8999999999999988653321 11110 0011 1111 122323 24677778
Q ss_pred EEEEECCEEecceeEEEEEecccccccccccceEEeec
Q 010251 163 DNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLG 200 (514)
Q Consensus 163 D~v~igg~~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg 200 (514)
+.+.+++.... ..|.+... ...|+|||+-
T Consensus 78 ~~l~i~~~~~~-~~~~Vl~~--------~~~d~ILG~d 106 (124)
T cd05479 78 AQVKIGNLFLP-CSFTVLED--------DDVDFLIGLD 106 (124)
T ss_pred EEEEECCEEee-eEEEEECC--------CCcCEEecHH
Confidence 89999998765 66655432 2568999985
No 33
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=94.72 E-value=0.27 Score=46.13 Aligned_cols=105 Identities=18% Similarity=0.264 Sum_probs=72.8
Q ss_pred CcceEeceeccCceEEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeecCeEEEEEeccc
Q 010251 75 DTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTG 154 (514)
Q Consensus 75 ~~~~~~l~n~~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~g 154 (514)
+...+.|....++-|+++..|-. |++..++|||-+.+.++..... .--++.+. .+.++.+.-.+|
T Consensus 92 g~~~v~Lak~~~GHF~a~~~VNG--k~v~fLVDTGATsVal~~~dA~-------RlGid~~~------l~y~~~v~TANG 156 (215)
T COG3577 92 GYQEVSLAKSRDGHFEANGRVNG--KKVDFLVDTGATSVALNEEDAR-------RLGIDLNS------LDYTITVSTANG 156 (215)
T ss_pred CceEEEEEecCCCcEEEEEEECC--EEEEEEEecCcceeecCHHHHH-------HhCCCccc------cCCceEEEccCC
Confidence 34478888888999999999998 9999999999999988654321 12344332 234455566778
Q ss_pred eEE-EEEEEEEEEECCEEecceeEEEEEecccccccccccceEEeecc
Q 010251 155 AIS-GFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGF 201 (514)
Q Consensus 155 s~~-G~~~~D~v~igg~~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg~ 201 (514)
... ..+-.|.|.||++.+.|+.--++... ....-+|||.+
T Consensus 157 ~~~AA~V~Ld~v~IG~I~~~nV~A~V~~~g-------~L~~sLLGMSf 197 (215)
T COG3577 157 RARAAPVTLDRVQIGGIRVKNVDAMVAEDG-------ALDESLLGMSF 197 (215)
T ss_pred ccccceEEeeeEEEccEEEcCchhheecCC-------ccchhhhhHHH
Confidence 754 55677999999999988875444321 11245677763
No 34
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=94.39 E-value=0.025 Score=37.63 Aligned_cols=34 Identities=50% Similarity=1.123 Sum_probs=32.0
Q ss_pred cchhhHHhhhhhHHHHHHHhccCcccccccCccc
Q 010251 322 QECKTLVDQYGKTILEMLIAETQPQKICSQMGLC 355 (514)
Q Consensus 322 ~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c 355 (514)
..|+..++.|++.+++++....+|..+|...++|
T Consensus 2 ~~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C 35 (35)
T PF03489_consen 2 DECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred cHHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence 3599999999999999999999999999999988
No 35
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=93.99 E-value=0.25 Score=40.43 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=47.1
Q ss_pred EEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeecCeEEEEEeccce---EEEEEEEEEE
Q 010251 89 YFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA---ISGFFSQDNV 165 (514)
Q Consensus 89 Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs---~~G~~~~D~v 165 (514)
||+++.|+. +++.+++||||+..++....+. ....+. .......+.-.+|. ..|.. .+.+
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~~~~~--------~lg~~~------~~~~~~~v~~a~G~~~~~~G~~-~~~v 63 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISEKTWR--------KLGSPP------LKPTKKRLRTATGTKLSVLGQI-LVTV 63 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCHHHHH--------HhCCCc------cccccEEEEecCCCEeeEeEEE-EEEE
Confidence 578899998 9999999999999999764431 111110 11122333334444 35766 7889
Q ss_pred EECCEEecceeEEEEE
Q 010251 166 KVGDLVVKNQDFIEAT 181 (514)
Q Consensus 166 ~igg~~v~~~~fg~~~ 181 (514)
++++.... ..|-+..
T Consensus 64 ~~~~~~~~-~~~~v~~ 78 (91)
T cd05484 64 KYGGKTKV-LTLYVVK 78 (91)
T ss_pred EECCEEEE-EEEEEEE
Confidence 99997743 5554443
No 36
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=92.50 E-value=0.7 Score=40.24 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=22.9
Q ss_pred CeeEecHhhhcceEEEEECCCCeEEE
Q 010251 485 PLWILGDVFMGRYHTVFDYGNLSIGF 510 (514)
Q Consensus 485 ~~~iLG~~fl~~~y~vfD~~~~rIGf 510 (514)
...|||..||+++-.+.|+.+++|-+
T Consensus 99 ~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 99 VDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred cCEEecHHHHHhCCeEEECCCCEEEC
Confidence 35699999999999999999998853
No 37
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=91.76 E-value=0.58 Score=41.51 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=25.0
Q ss_pred eeEecHhhhcceEEEEECCCCeEEEEe
Q 010251 486 LWILGDVFMGRYHTVFDYGNLSIGFAE 512 (514)
Q Consensus 486 ~~iLG~~fl~~~y~vfD~~~~rIGfa~ 512 (514)
..|||..+|+.+....|..+++|-|..
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 579999999999999999999999864
No 38
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=91.72 E-value=0.99 Score=36.51 Aligned_cols=81 Identities=19% Similarity=0.218 Sum_probs=46.5
Q ss_pred EEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeecCeEEEEEeccceEE-EEEEEE-EEEECC
Q 010251 92 EVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAIS-GFFSQD-NVKVGD 169 (514)
Q Consensus 92 ~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~-G~~~~D-~v~igg 169 (514)
.+.|.. +++++++|||++.+-+....+. . . ....+...+.=.+|... -.-..+ .+.+|+
T Consensus 2 ~v~InG--~~~~fLvDTGA~~tii~~~~a~---~-----~---------~~~~~~~~v~gagG~~~~~v~~~~~~v~vg~ 62 (86)
T cd06095 2 TITVEG--VPIVFLVDTGATHSVLKSDLGP---K-----Q---------ELSTTSVLIRGVSGQSQQPVTTYRTLVDLGG 62 (86)
T ss_pred EEEECC--EEEEEEEECCCCeEEECHHHhh---h-----c---------cCCCCcEEEEeCCCcccccEEEeeeEEEECC
Confidence 456666 8999999999999999765442 0 0 01122233332333321 111123 699999
Q ss_pred EEecceeEEEEEecccccccccccceEEeecc
Q 010251 170 LVVKNQDFIEATKEASITFLAAKFDGILGLGF 201 (514)
Q Consensus 170 ~~v~~~~fg~~~~~~~~~~~~~~~~GIlGLg~ 201 (514)
..+.+ .|...... .++|||+.+
T Consensus 63 ~~~~~-~~~v~~~~---------~~~lLG~df 84 (86)
T cd06095 63 HTVSH-SFLVVPNC---------PDPLLGRDL 84 (86)
T ss_pred EEEEE-EEEEEcCC---------CCcEechhh
Confidence 98875 45443211 378999853
No 39
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=90.16 E-value=4.1 Score=35.31 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=27.8
Q ss_pred cCCceEEEEceEEECCeeecccCCCceEEEcCCCCCcccCHHHHHHH
Q 010251 264 KKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310 (514)
Q Consensus 264 ~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l 310 (514)
..+++.++ +.|||+.+ .++||||.+.+.++.+..+++
T Consensus 8 ~~g~~~v~---~~InG~~~-------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNV-------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 34555544 56778744 689999999999999977665
No 40
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=89.51 E-value=0.53 Score=45.09 Aligned_cols=96 Identities=26% Similarity=0.525 Sum_probs=71.9
Q ss_pred chhhHHhhhhhHHHHHHHhccCcccccccCcccccCCCCcccccceeeeccCCCCCCCCCCCcccchhhhHHHHHHHHHH
Q 010251 323 ECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTFDGTRGFSMGIESVIDKSSDKSSDGVHDSAMCSACEMAVIWMQNKL 402 (514)
Q Consensus 323 ~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (514)
.|...+..|++.+.+++.+.+.|+.+|..+++|--.+. ...+-.++ - ..+..|.+|.+++-.+..+|
T Consensus 78 ~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~~~~~-~~~~~~~~---------~---~~~~~C~~C~~~V~~~~~~l 144 (218)
T KOG1340|consen 78 ECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCSASAG-PVSEVFAS---------Q---PAAGECELCRETVTEADTKL 144 (218)
T ss_pred HHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCCcccc-hhhhhhhh---------c---ccccccHHHHHHHHHHHHhc
Confidence 79999999999999999999999999999999964111 11111111 1 22678999999999999999
Q ss_pred hh-chhhHHHHhhhhccccCCCCCCCCeeeeCCC
Q 010251 403 RR-NETADQILNYVNQLCDRLPSPNGESAVDCDN 435 (514)
Q Consensus 403 ~~-~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~ 435 (514)
+. ++++..+.......|..++ .|.--|++
T Consensus 145 ~d~~~~k~~~~~~~~~~ck~l~----~~~~~Ck~ 174 (218)
T KOG1340|consen 145 QDKPKTKGKIVSLLLKSCKSLP----NYEQKCKQ 174 (218)
T ss_pred ccchhHHHHHHHHHHhhccCCc----cchhHHHH
Confidence 99 8888888888888885443 23334654
No 41
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=88.47 E-value=0.41 Score=37.01 Aligned_cols=37 Identities=32% Similarity=0.733 Sum_probs=35.5
Q ss_pred cchhhhHHHHHHHHHHhhchhhHHHHhhhhccccCCC
Q 010251 387 MCSACEMAVIWMQNKLRRNETADQILNYVNQLCDRLP 423 (514)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 423 (514)
.|..|++++..+++.+..+.+.+.+...+.+.|..++
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~ 38 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLP 38 (76)
T ss_pred cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcC
Confidence 5999999999999999999999999999999999987
No 42
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=87.26 E-value=0.33 Score=30.93 Aligned_cols=24 Identities=33% Similarity=0.221 Sum_probs=16.8
Q ss_pred eEEEeeeeeccchhhhhccCcccc
Q 010251 30 LVRIGLRKKKLDQINRLVGQTVSK 53 (514)
Q Consensus 30 ~~ripL~~~~~~~~~~~~~~~~~~ 53 (514)
++||||+|.++.++.+.+.+...+
T Consensus 1 l~rIPL~K~kS~R~~L~e~g~~~~ 24 (29)
T PF07966_consen 1 LVRIPLKKFKSMRETLREKGTLEE 24 (29)
T ss_dssp -EEEEEEE---HHHHHHHTT-HHH
T ss_pred CEEEeccCCchHHHHHHHcCchHH
Confidence 479999999999999998887665
No 43
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=84.24 E-value=4.8 Score=34.05 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.7
Q ss_pred CeeEecHhhhcceEEEEECCCCeE
Q 010251 485 PLWILGDVFMGRYHTVFDYGNLSI 508 (514)
Q Consensus 485 ~~~iLG~~fl~~~y~vfD~~~~rI 508 (514)
+..+||..||+++-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 357999999999999999988753
No 44
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=84.03 E-value=1.7 Score=33.86 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=29.4
Q ss_pred cCceEEEEEEEcCCCceEEEEecCCCCceeeeCCCC
Q 010251 85 MDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC 120 (514)
Q Consensus 85 ~~~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C 120 (514)
....+++.+.||. +.+..++|||++...++...+
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCHHHH
Confidence 3578999999999 999999999999998876543
No 45
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=74.16 E-value=3.8 Score=33.72 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=24.0
Q ss_pred EEEEEEcCCCceEEEEecCCCCceeeeCCCC
Q 010251 90 FGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC 120 (514)
Q Consensus 90 ~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C 120 (514)
+.+|.|.. +++.+++||||+.+.++...+
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeECC--EEEEEEEecCCCcceeccccc
Confidence 56778887 899999999999998876543
No 46
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=72.77 E-value=7.8 Score=35.32 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=22.1
Q ss_pred CCCceEEEcCCCCCcccCHHHHHHHHH
Q 010251 286 STGCNAIADSGTSLLAGPTTIITQINH 312 (514)
Q Consensus 286 ~~~~~aiiDTGTs~i~lp~~~~~~l~~ 312 (514)
.....+++|||++...+..++.+.|.=
T Consensus 43 ~t~i~vLfDSGSPTSfIr~di~~kL~L 69 (177)
T PF12384_consen 43 GTPIKVLFDSGSPTSFIRSDIVEKLEL 69 (177)
T ss_pred CcEEEEEEeCCCccceeehhhHHhhCC
Confidence 345679999999999999998887733
No 47
>PF13650 Asp_protease_2: Aspartyl protease
Probab=72.43 E-value=5 Score=31.88 Aligned_cols=29 Identities=17% Similarity=0.398 Sum_probs=23.5
Q ss_pred EEECCeeecccCCCceEEEcCCCCCcccCHHHHHHH
Q 010251 275 VLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310 (514)
Q Consensus 275 i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l 310 (514)
+.|||+.+ .+++|||++.+.++++.++++
T Consensus 3 v~vng~~~-------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-------EEEEcCCCCcEEECHHHHHHc
Confidence 56677644 699999999999999977766
No 48
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=66.98 E-value=9.9 Score=29.53 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=24.7
Q ss_pred eEEECCeeecccCCCceEEEcCCCCCcccCHHHHHHH
Q 010251 274 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310 (514)
Q Consensus 274 ~i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l 310 (514)
.+.|++..+ .+++|||.+-.+++.+..+++
T Consensus 12 ~~~I~g~~~-------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQV-------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEE-------EEEEeCCCcceecCHHHHHHh
Confidence 356777654 599999999999999988877
No 49
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=65.69 E-value=14 Score=32.32 Aligned_cols=79 Identities=19% Similarity=0.328 Sum_probs=45.9
Q ss_pred ceEEEEEEEcCCCceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeecCeEEEEEeccc--eEEEEEEEEE
Q 010251 87 AQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTG--AISGFFSQDN 164 (514)
Q Consensus 87 ~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~g--s~~G~~~~D~ 164 (514)
...|+++.|+. +++++++|||...+-+..+ | ...|.-...-+... -...+|-| .+.|.+..-.
T Consensus 23 ~mLyI~~~ing--~~vkA~VDtGAQ~tims~~-~--a~r~gL~~lid~r~----------~g~a~GvG~~~i~G~Ih~~~ 87 (124)
T PF09668_consen 23 SMLYINCKING--VPVKAFVDTGAQSTIMSKS-C--AERCGLMRLIDKRF----------AGVAKGVGTQKILGRIHSVQ 87 (124)
T ss_dssp ---EEEEEETT--EEEEEEEETT-SS-EEEHH-H--HHHTTGGGGEEGGG-----------EE-------EEEEEEEEEE
T ss_pred ceEEEEEEECC--EEEEEEEeCCCCccccCHH-H--HHHcCChhhccccc----------cccccCCCcCceeEEEEEEE
Confidence 35899999998 9999999999999887543 3 13554322222110 01233444 3679999999
Q ss_pred EEECCEEecceeEEEEE
Q 010251 165 VKVGDLVVKNQDFIEAT 181 (514)
Q Consensus 165 v~igg~~v~~~~fg~~~ 181 (514)
+.+|+..++ ..|-+..
T Consensus 88 l~ig~~~~~-~s~~Vle 103 (124)
T PF09668_consen 88 LKIGGLFFP-CSFTVLE 103 (124)
T ss_dssp EEETTEEEE-EEEEEET
T ss_pred EEECCEEEE-EEEEEeC
Confidence 999986665 5554443
No 50
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=64.46 E-value=4.6 Score=33.50 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=11.6
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhhcC
Q 010251 1 MGTKFTAIRVALFLFLILSPAAFALP 26 (514)
Q Consensus 1 M~~~~~~~~~~l~~~~ll~~~~~a~s 26 (514)
|+++..++ +.++|+++++++++++
T Consensus 1 MaSK~~ll--L~l~LA~lLlisSeva 24 (95)
T PF07172_consen 1 MASKAFLL--LGLLLAALLLISSEVA 24 (95)
T ss_pred CchhHHHH--HHHHHHHHHHHHhhhh
Confidence 88766555 3334444444433333
No 51
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=61.99 E-value=11 Score=30.50 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=25.0
Q ss_pred eEEECCeeecccCCCceEEEcCCCCCcccCHHHHHHH
Q 010251 274 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310 (514)
Q Consensus 274 ~i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l 310 (514)
.+.|||+.+ .+++|||++...++.+.+.++
T Consensus 4 ~~~Ing~~i-------~~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPL-------KFQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEE-------EEEEcCCcceEEeCHHHHHHh
Confidence 367788766 589999999999999988766
No 52
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=60.70 E-value=13 Score=29.78 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=23.4
Q ss_pred eEEECCeeecccCCCceEEEcCCCCCcccCHHHHHHH
Q 010251 274 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310 (514)
Q Consensus 274 ~i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l 310 (514)
.+.+|++.+ .+++|||++.+.++.+..+.+
T Consensus 6 ~v~i~~~~~-------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV-------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 356666544 699999999999999877655
No 53
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=58.97 E-value=12 Score=30.50 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=21.4
Q ss_pred EEEEcCCCceEEEEecCCCCceeeeCCC
Q 010251 92 EVSIGTPSQTFTVIFDTGSSNLWVPSAK 119 (514)
Q Consensus 92 ~i~IGtPpQ~~~v~lDTGSs~~WV~~~~ 119 (514)
.+.|+. |.+.+++|||++++-+....
T Consensus 2 ~~~i~g--~~~~~llDTGAd~Tvi~~~~ 27 (87)
T cd05482 2 TLYING--KLFEGLLDTGADVSIIAEND 27 (87)
T ss_pred EEEECC--EEEEEEEccCCCCeEEcccc
Confidence 456675 99999999999999997543
No 54
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=58.34 E-value=6.9 Score=29.86 Aligned_cols=36 Identities=42% Similarity=1.033 Sum_probs=32.0
Q ss_pred cccchhhHHhhhhhHHHHHHHhccCcccccccCccc
Q 010251 320 ISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLC 355 (514)
Q Consensus 320 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c 355 (514)
....|...+..|++.+++.+.....|+.+|..+++|
T Consensus 41 ~~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C 76 (76)
T smart00741 41 LSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 345699999999999999998888899999999987
No 55
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=55.88 E-value=69 Score=28.26 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=24.9
Q ss_pred ceEEEEEEEcCCCceEEEEecCCCCceeeeC
Q 010251 87 AQYFGEVSIGTPSQTFTVIFDTGSSNLWVPS 117 (514)
Q Consensus 87 ~~Y~~~i~IGtPpQ~~~v~lDTGSs~~WV~~ 117 (514)
..-.+.+.|.+ ++..+++|+|++.-++..
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~ 48 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISS 48 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccH
Confidence 35678889998 999999999999988854
No 56
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=54.65 E-value=15 Score=29.57 Aligned_cols=29 Identities=10% Similarity=0.182 Sum_probs=24.1
Q ss_pred EEECCeeecccCCCceEEEcCCCCCcccCHHHHHHH
Q 010251 275 VLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310 (514)
Q Consensus 275 i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l 310 (514)
+.|||+.+ ..++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~-------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-------EEEEECCCCeEEECHHHhhhc
Confidence 56777655 589999999999999988775
No 57
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=39.30 E-value=1.9e+02 Score=23.76 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=37.4
Q ss_pred ceEEEEecCCCCceeeeCCCCCCCcccccCCcccCCCCCceeecCeEEEEEeccceEEEEEEEEEEE--ECCEEecceeE
Q 010251 100 QTFTVIFDTGSSNLWVPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGAISGFFSQDNVK--VGDLVVKNQDF 177 (514)
Q Consensus 100 Q~~~v~lDTGSs~~WV~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs~~G~~~~D~v~--igg~~v~~~~f 177 (514)
....+++|||+...-+|...|. .. ...+++.+.-.+|+....++.-.++ +|....-...|
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~--------~~----------~~~~~~~l~AANgt~I~tyG~~~l~ldlGlrr~~~w~F 69 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTK--------KS----------LKPSPLTLQAANGTPIATYGTRSLTLDLGLRRPFAWNF 69 (89)
T ss_pred CCcEEEEeCCCceEeecccccc--------cc----------ccCCceEEEeCCCCeEeeeeeEEEEEEcCCCcEEeEEE
Confidence 4568999999999999987663 00 1123345555666654455444444 44432333556
Q ss_pred EEEE
Q 010251 178 IEAT 181 (514)
Q Consensus 178 g~~~ 181 (514)
-+++
T Consensus 70 vvAd 73 (89)
T cd06094 70 VVAD 73 (89)
T ss_pred EEcC
Confidence 5544
No 58
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=37.03 E-value=21 Score=31.00 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=18.1
Q ss_pred eEEEcCCCC-CcccCHHHHHHH
Q 010251 290 NAIADSGTS-LLAGPTTIITQI 310 (514)
Q Consensus 290 ~aiiDTGTs-~i~lp~~~~~~l 310 (514)
..+||||.+ ++.+|.++++++
T Consensus 28 ~~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 28 DELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eeEEecCCceeEEeCHHHHHhc
Confidence 348999988 999999988776
No 59
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=36.05 E-value=29 Score=28.37 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=21.1
Q ss_pred eEEECCeeecccCCCceEEEcCCCCCcccCHHHH
Q 010251 274 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTII 307 (514)
Q Consensus 274 ~i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~ 307 (514)
.|.++|..+ .++||||+..+.++.+.+
T Consensus 9 ~v~i~g~~i-------~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKI-------KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEE-------EEEEETTBSSEEESSGGS
T ss_pred EEeECCEEE-------EEEEecCCCcceeccccc
Confidence 466677655 699999999999997643
No 60
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=35.82 E-value=20 Score=34.52 Aligned_cols=44 Identities=25% Similarity=0.622 Sum_probs=38.5
Q ss_pred hccCcccccchhhHHhhhhhHHHHHHHhccCcccccccCccccc
Q 010251 314 IGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQMGLCTF 357 (514)
Q Consensus 314 i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~ 357 (514)
......+...|++.+..|+..++.++..-++|+.+|...+.|..
T Consensus 162 ck~l~~~~~~Ck~fV~~y~p~~i~~l~~~~~p~~vC~~l~~C~~ 205 (218)
T KOG1340|consen 162 CKSLPNYEQKCKQFVHEYGPQLITLLEEGLDPHDVCTALGACPP 205 (218)
T ss_pred ccCCccchhHHHHHHHHhccHHHHHHHHhhCchhHHHHhhcCCc
Confidence 34445667789999999999999999999999999999999974
No 61
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=34.31 E-value=79 Score=30.06 Aligned_cols=36 Identities=14% Similarity=0.294 Sum_probs=28.3
Q ss_pred CCceEEEEceEEECCeeecccCCCceEEEcCCCCCcccCHHHHHHH
Q 010251 265 KGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310 (514)
Q Consensus 265 ~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l 310 (514)
.|++.+ ...|||+.+ ..++|||.|.+.++.+..+++
T Consensus 103 ~GHF~a---~~~VNGk~v-------~fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEA---NGRVNGKKV-------DFLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEE---EEEECCEEE-------EEEEecCcceeecCHHHHHHh
Confidence 455443 467888876 479999999999999988776
No 62
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=31.98 E-value=56 Score=29.96 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=20.9
Q ss_pred EEEEEEcCCCceEEEEecCCCCceeeeC
Q 010251 90 FGEVSIGTPSQTFTVIFDTGSSNLWVPS 117 (514)
Q Consensus 90 ~~~i~IGtPpQ~~~v~lDTGSs~~WV~~ 117 (514)
...+.++.-..++.++|||||..-++..
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~ 61 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRS 61 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeeh
Confidence 3444445545999999999999888754
No 63
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=31.37 E-value=54 Score=28.63 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=23.1
Q ss_pred eEEECCeeecccCCCceEEEcCCCCCcccCHHHHHHH
Q 010251 274 DVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQI 310 (514)
Q Consensus 274 ~i~vgg~~~~~~~~~~~aiiDTGTs~i~lp~~~~~~l 310 (514)
.+++||+.+ .|+||||+-.+.++.+.++++
T Consensus 28 ~~~ing~~v-------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPV-------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEE-------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEE-------EEEEeCCCCccccCHHHHHHc
Confidence 467788766 599999999999999987764
No 64
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=29.59 E-value=51 Score=26.98 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=19.9
Q ss_pred ceEEEcCCCCCcccCHHHHHHHH
Q 010251 289 CNAIADSGTSLLAGPTTIITQIN 311 (514)
Q Consensus 289 ~~aiiDTGTs~i~lp~~~~~~l~ 311 (514)
..+.+|||.+...+|...++++.
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhhc
Confidence 46899999999999999887764
No 65
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=27.41 E-value=52 Score=27.11 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=16.7
Q ss_pred CCCceEEEcCCCCCcccCHH
Q 010251 286 STGCNAIADSGTSLLAGPTT 305 (514)
Q Consensus 286 ~~~~~aiiDTGTs~i~lp~~ 305 (514)
.+...+++|||++.++++.+
T Consensus 9 ~q~~~~~~DTGSs~~Wv~~~ 28 (109)
T cd05470 9 PQTFNVLLDTGSSNLWVPSV 28 (109)
T ss_pred CceEEEEEeCCCCCEEEeCC
Confidence 35568999999999999864
No 66
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=27.09 E-value=67 Score=27.02 Aligned_cols=66 Identities=15% Similarity=0.246 Sum_probs=39.7
Q ss_pred EEEEEcCCC----ceEEEEecCCCCcee-eeCCCCCCCcccccCCcccCCCCCceeecCeEEEEEeccce-EEEEEEEEE
Q 010251 91 GEVSIGTPS----QTFTVIFDTGSSNLW-VPSAKCYFSVSCYFHSKYKSSHSSTYKRNGTSAAIQYGTGA-ISGFFSQDN 164 (514)
Q Consensus 91 ~~i~IGtPp----Q~~~v~lDTGSs~~W-V~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~gs-~~G~~~~D~ 164 (514)
+++.|..|. -++.+++|||.+..- ++...-. .-...+.. .....-++|. ..-....++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~-------~lgl~~~~---------~~~~~tA~G~~~~~~v~~~~ 65 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVN-------KLGLPELD---------QRRVYLADGREVLTDVAKAS 65 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHH-------HcCCCccc---------CcEEEecCCcEEEEEEEEEE
Confidence 567788773 278999999999765 5432110 01112111 1234445664 456677899
Q ss_pred EEECCEEe
Q 010251 165 VKVGDLVV 172 (514)
Q Consensus 165 v~igg~~v 172 (514)
|.++|...
T Consensus 66 v~igg~~~ 73 (107)
T TIGR03698 66 IIINGLEI 73 (107)
T ss_pred EEECCEEE
Confidence 99999765
No 67
>PRK02710 plastocyanin; Provisional
Probab=23.04 E-value=1.2e+02 Score=26.07 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=16.8
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhhcCCCceEEEee
Q 010251 1 MGTKFTAIRVALFLFLILSPAAFALPNDGLVRIGL 35 (514)
Q Consensus 1 M~~~~~~~~~~l~~~~ll~~~~~a~s~~~~~ripL 35 (514)
|.+++.+++..++++++.+++.+..+.+..++|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~V~~ 35 (119)
T PRK02710 1 MAKRLRSIAAALVAVVSSFGLGVSSASAETVEVKM 35 (119)
T ss_pred CchhHHHHHHHHHHHHHHHHhcccccccceEEEEE
Confidence 66666666323333333333333344445556655
Done!