BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010252
(514 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D8Z1|ASCC1_MOUSE Activating signal cointegrator 1 complex subunit 1 OS=Mus musculus
GN=Ascc1 PE=2 SV=1
Length = 356
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 17/197 (8%)
Query: 326 SSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVM-DALDNRPLFIRL 384
S D G+D +IF PK HLT+ ML L ++ + +L+ + + D RPL + +
Sbjct: 161 SKDRGVDSTIFQNPKKLHLTIGMLVLLSEQEIQQTCEILQRCKEEFINDISGGRPLEVEM 220
Query: 385 KGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHAT 444
G++ M +LYA V +RL +++ F GL+ +++ +KLHAT
Sbjct: 221 AGIEYMNDDPAMVDVLYAKVHMKDGSNRLQELVDRVLERFQSLGLIV-KEWTS-VKLHAT 278
Query: 445 LMNIRHKKRRKGTRRVDY--------------FDARDIFKQFGSKEWGEYLIKEAHLSQR 490
+MN +K R + FD R+I K F + +G + H+SQR
Sbjct: 279 VMNTLLRKDPNAEGRYNLYTADGKYIFKERESFDGRNILKTFENFYFGSLRLNSIHISQR 338
Query: 491 FVYDESGFYHCCASIPF 507
F D G Y C + F
Sbjct: 339 FTVDSFGNYASCGHVDF 355
Score = 40.4 bits (93), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 154 HSLSVEVGASVIRF--IKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKA 211
H V A + + I GK G T+KK E E I +P E I+I G + V A
Sbjct: 56 HGFRATVSAPSLLYKHIVGKRGDTKKKIEVETKTSINIPKHGHEGEIVITGQHRNGVVSA 115
Query: 212 SEKIQAIIAEAVESPSLDYSHFVSLPLAVHPELVDKLVNFQNTIL 256
+I ++ ++HF+S L E+ ++ + FQ +L
Sbjct: 116 RTRIDVLLDTFRRRQP--FTHFLSFFLN-EVEVQERFLMFQEEVL 157
>sp|Q8N9N2|ASCC1_HUMAN Activating signal cointegrator 1 complex subunit 1 OS=Homo sapiens
GN=ASCC1 PE=1 SV=1
Length = 400
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 92/184 (50%), Gaps = 6/184 (3%)
Query: 326 SSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVM-DALDNRPLFIRL 384
S D G+D SIF PK HLT+ ML L +++ + +L+ + + D +PL + +
Sbjct: 190 SMDHGVDSSIFQNPKKLHLTIGMLVLLSEEEIQQTCEMLQQCKEEFINDISGGKPLEVEM 249
Query: 385 KGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHAT 444
G++ M +LYA V +RL +++ F +GL+ +++N +KLHAT
Sbjct: 250 AGIEYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIV-KEWN-SVKLHAT 307
Query: 445 LMNIRHKKRRKGTRRVDYFDA--RDIFKQFGSKEWGEYLIKEAHLSQRFVYDESGFYHCC 502
+MN +K R + + A + IFK+ S + G ++K L R Y+++ HC
Sbjct: 308 VMNTLFRKDPNAEGRYNLYTAEGKYIFKERESFD-GRNILKSFALLPRLEYNDAISAHCN 366
Query: 503 ASIP 506
+P
Sbjct: 367 LCLP 370
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 166 RFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVES 225
R I GK G T+KK E E I +P ++ I+I G + V A +I ++
Sbjct: 99 RHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISARTRIDVLLDTFRRK 158
Query: 226 PSLDYSHFVSLPLAVHPELVDKLVNFQNTILG 257
++HF++ L E+ + + FQ +L
Sbjct: 159 QP--FTHFLAFFLN-EVEVQEGFLRFQEEVLA 187
>sp|Q7TN79|AKA7G_MOUSE A-kinase anchor protein 7 isoform gamma OS=Mus musculus GN=Akap7
PE=1 SV=2
Length = 314
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 20/171 (11%)
Query: 341 TFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARIL 400
+FH+T+L+++L N+D VN T+ L + V + L+ + L + +G+ +G
Sbjct: 91 SFHITLLVMQLLNEDEVNIGTDALLELKPFVEEILEGKHLALPFQGIGTFQGQ------- 143
Query: 401 YAPVEEIGDGDR---LLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKK--RRK 455
++ DGD LL + F E G++ ++ K H T M + R+K
Sbjct: 144 -VGFVKLADGDHVSALLEIAETAKRTFREKGILAGE--SRTFKPHLTFMKLSKAPMLRKK 200
Query: 456 GTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDES-GFYHCCASI 505
G R+++ +++QF +GE L+ + L +S G+YHC +SI
Sbjct: 201 GVRKIE----PGLYEQFIDHRFGEELLYQIDLCSMLKKKQSNGYYHCESSI 247
>sp|Q6JP77|AKA7G_RAT A-kinase anchor protein 7 isoforms delta and gamma OS=Rattus
norvegicus GN=Akap7 PE=1 SV=1
Length = 353
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 20/171 (11%)
Query: 341 TFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARIL 400
+FH+T+L+++L N+D VN T+ L + V + L+ + L + G+ +G +
Sbjct: 130 SFHITLLVMQLLNEDEVNIGTDALLELKPFVEEILEGKHLTLPFHGIGTFQGQVGFVK-- 187
Query: 401 YAPVEEIGDGDR---LLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKKR--RK 455
+ DGD LL + F E G++ ++ K H T M + +K
Sbjct: 188 ------LADGDHVSALLEIAETAKRTFQEKGILAGE--SRTFKPHLTFMKLSKAPMLWKK 239
Query: 456 GTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDES-GFYHCCASI 505
G R+++ +++QF +GE ++ + L +S G+YHC +SI
Sbjct: 240 GVRKIE----PGLYEQFIDHRFGEEILYQIDLCSMLKKKQSNGYYHCESSI 286
>sp|Q9P0M2|AKA7G_HUMAN A-kinase anchor protein 7 isoform gamma OS=Homo sapiens GN=AKAP7
PE=1 SV=2
Length = 348
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 14/168 (8%)
Query: 341 TFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARIL 400
+FH+T+L+++L N+D VN + L + + + L + L + +G+ ++
Sbjct: 125 SFHITLLVMQLLNEDEVNIGIDALLELKPFIEELLQGKHLTLPFQGIGTFGN-----QVG 179
Query: 401 YAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKK--RRKGTR 458
+ + E + LL + F E G++ ++ K H T M + R+ G +
Sbjct: 180 FVKLAEGDHVNSLLEIAETANRTFQEKGILVGE--SRSFKPHLTFMKLSKSPWLRKNGVK 237
Query: 459 RVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDES-GFYHCCASI 505
++D D++++F S +GE ++ L +S G+YHC +SI
Sbjct: 238 KID----PDLYEKFISHRFGEEILYRIDLCSMLKKKQSNGYYHCESSI 281
>sp|A6X982|YOGD_SCHPO Uncharacterized protein C15D4.13c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC15D4.13c PE=4 SV=2
Length = 204
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 18/186 (9%)
Query: 325 TSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRL 384
TS+D I S F P+ HLT+ M+ + N + V + L + ++ + + + I L
Sbjct: 28 TSNDPMI-LSGFRGPRVSHLTIGMIPVKNDEDVLKCMDFLYNKEDEIRKSYGEKKITIDL 86
Query: 385 KGLDLMRGSKDKARILYA-PVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHA 443
KG S +A++LYA PV++ + +++ F E L F +D + L LH
Sbjct: 87 KGTSFFGKSPQEAKVLYATPVDKHNEWLKVI---------FTEHNL-FTKD-ARPLTLHC 135
Query: 444 TLMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYL-IKEAHLSQRFVYDESG--FYH 500
TL+N R+ K + RR+ +F++ +++G W + + + + + E G +Y
Sbjct: 136 TLLNSRYIKYQ--GRRIRFFNSEPFMEKYGQFLWAHNIELDKLSIMKTGAVGEPGNMYYE 193
Query: 501 CCASIP 506
ASIP
Sbjct: 194 ELASIP 199
>sp|Q473U7|PNP_CUPPJ Polyribonucleotide nucleotidyltransferase OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=pnp PE=3
SV=1
Length = 728
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 165 IRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEA 222
IR + GK GST + KE G I + +++ +I I STD +A+A +I+ I AEA
Sbjct: 567 IREVIGKGGSTIQALTKETGTTIDI---QEDGTITIASTSTDGMAEAKRRIEGITAEA 621
>sp|Q0KCT4|PNP_CUPNH Polyribonucleotide nucleotidyltransferase OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=pnp
PE=3 SV=1
Length = 723
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 165 IRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEA 222
IR + GK GST + KE G I + +++ +I I STD +A+A +I+ I AEA
Sbjct: 567 IREVIGKGGSTIQALTKETGTTIDI---QEDGTITIASTSTDGMAEAKRRIEGITAEA 621
>sp|Q1LPW7|PNP_RALME Polyribonucleotide nucleotidyltransferase OS=Ralstonia
metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
GN=pnp PE=3 SV=1
Length = 725
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 165 IRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEA 222
IR + GK GST + KE G I + +++ +I I STD +A+A +I+ I AEA
Sbjct: 567 IREVIGKGGSTIQALTKETGTTIDI---QEDGTITIASTSTDGMAEAKRRIEGITAEA 621
>sp|Q31GI3|UVRC_THICR UvrABC system protein C OS=Thiomicrospira crunogena (strain XCL-2)
GN=uvrC PE=3 SV=1
Length = 613
Score = 36.6 bits (83), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 52/126 (41%), Gaps = 21/126 (16%)
Query: 337 IKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDK 396
+K + L L++ K ++N A +V K++ LDN PL KG G K
Sbjct: 457 VKKEGLPLPDLIVIDGGKGQLNKAIDVFKTLE------LDNLPLVSVAKG----EGRKAG 506
Query: 397 ARILYAPVEEIG----DGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNI---- 448
ILY P E G D LH I D + + HR +K + H+ L +I
Sbjct: 507 LEILYTPFNEEGIDLEADDIALHLLNYIRDEAHRFAITSHRSRRQKAQTHSRLEDIPGVG 566
Query: 449 ---RHK 451
RHK
Sbjct: 567 AKTRHK 572
>sp|B3R3W3|PNP_CUPTR Polyribonucleotide nucleotidyltransferase OS=Cupriavidus
taiwanensis (strain R1 / LMG 19424) GN=pnp PE=3 SV=1
Length = 723
Score = 36.6 bits (83), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 165 IRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEA 222
IR + GK GST + KE G I + +++ +I I ST+ +A+A +I+ I AEA
Sbjct: 567 IREVIGKGGSTIQALTKETGTTIDI---QEDGTITIASTSTEGMAEAKRRIEGITAEA 621
>sp|B7IUK0|TRMD_BACC2 tRNA (guanine-N(1)-)-methyltransferase OS=Bacillus cereus (strain
G9842) GN=trmD PE=3 SV=1
Length = 244
Score = 32.7 bits (73), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 19/85 (22%)
Query: 415 HACQVIIDAFNEAGLVFHRDYNKK-----LKLHATLMNIRHKK----------RRKGTRR 459
HA QV D+F+ GL+ H Y + +K+ LM+ HK RR TRR
Sbjct: 163 HASQVE-DSFS-TGLLEHPHYTRPADFRGMKVPDVLMSGNHKNIDEWRHKESLRRTYTRR 220
Query: 460 VDYFDARDIFKQFGSKEWGEYLIKE 484
D D RD+ KQ K+W E + +E
Sbjct: 221 PDLLDDRDLSKQ--EKKWLEEIKRE 243
>sp|P41993|YKC2_CAEEL Uncharacterized protein B0280.2 OS=Caenorhabditis elegans
GN=B0280.2 PE=4 SV=3
Length = 627
Score = 32.3 bits (72), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 92/222 (41%), Gaps = 27/222 (12%)
Query: 101 HCSTSSNVSDAQLGVEVAEA----VNEGTDLTLSSSVSLDDIKDETLEGEPVP-SAERHS 155
HCS +++A L V A + G L L++S L P P AE S
Sbjct: 390 HCSEKP-IAEAPLRPPVRPAPIVPTSAGLCLVLAASFPTSSTPSRFLNPFPAPLPAE--S 446
Query: 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIIL---PSSKKEDSIIIEGNSTDSVAKAS 212
+ + FIK Q+ F+ + ++ I PSS ++ II+G S++ +S
Sbjct: 447 FFGNSKSKIAYFIKPTNEQPQELFQTPVQIEKIFSSTPSSPVSNAAIIDGMKNISLSDSS 506
Query: 213 EKIQAIIAEAVESPSLDYSHFVSLPLAVHP---------ELVDKLVNFQNTILGITDVCL 263
+ IA V +P S +S + P E+VD+ + T + +T+ C
Sbjct: 507 TSVAQDIAMKVPTPLPRTSKIISASSPLPPSQDEINPLIEMVDQSSSKSETQIPVTE-C- 564
Query: 264 DENVGSKSNEDASDSEEKEQQVDQEHKVAVELNIGDNSERVK 305
S+S+ + S + Q D + + L+I NSE+ K
Sbjct: 565 -----SQSHLNGKGSAAQIQSADFDKVLNQLLSIKVNSEKSK 601
>sp|Q64213|SF01_MOUSE Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=6
Length = 653
Score = 32.3 bits (72), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 19/81 (23%)
Query: 165 IRFIKGKEGSTQKKFEKEMGVKII-------------------LPSSKKEDSIIIEGNST 205
+ + G G+T K EKE KI+ LP + ++ N+
Sbjct: 153 VGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM 212
Query: 206 DSVAKASEKIQAIIAEAVESP 226
++V KA E+I+ I+ + +E+P
Sbjct: 213 ENVKKAVEQIRNILKQGIETP 233
>sp|Q15637|SF01_HUMAN Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4
Length = 639
Score = 32.3 bits (72), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 19/81 (23%)
Query: 165 IRFIKGKEGSTQKKFEKEMGVKII-------------------LPSSKKEDSIIIEGNST 205
+ + G G+T K EKE KI+ LP + ++ N+
Sbjct: 153 VGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM 212
Query: 206 DSVAKASEKIQAIIAEAVESP 226
++V KA E+I+ I+ + +E+P
Sbjct: 213 ENVKKAVEQIRNILKQGIETP 233
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,458,295
Number of Sequences: 539616
Number of extensions: 7856824
Number of successful extensions: 26811
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 26742
Number of HSP's gapped (non-prelim): 212
length of query: 514
length of database: 191,569,459
effective HSP length: 122
effective length of query: 392
effective length of database: 125,736,307
effective search space: 49288632344
effective search space used: 49288632344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)