Query 010252
Match_columns 514
No_of_seqs 302 out of 932
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 23:11:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vfk_A AKAP18 delta; APO, hydr 100.0 1.8E-30 6.2E-35 247.6 14.9 203 285-510 1-204 (205)
2 1vgj_A Hypothetical protein PH 99.9 1.5E-27 5E-32 223.3 14.6 180 289-507 3-182 (184)
3 1iuh_A 2'-5' RNA ligase; riken 99.9 6.6E-24 2.2E-28 202.4 14.6 174 289-510 3-182 (198)
4 2d4g_A Hypothetical protein BS 99.8 2.8E-20 9.6E-25 172.0 11.6 166 289-509 3-169 (171)
5 1jh6_A Cyclic phosphodiesteras 99.7 9.2E-18 3.1E-22 159.1 14.1 171 289-510 10-182 (189)
6 2cte_A Vigilin; K homology typ 99.5 6.7E-14 2.3E-18 118.8 7.7 73 151-224 14-87 (94)
7 2dgr_A Ring finger and KH doma 99.4 2.3E-13 7.9E-18 113.2 8.2 71 150-221 6-76 (83)
8 2ctl_A Vigilin; K homology typ 99.4 1.1E-12 3.7E-17 112.1 9.1 72 152-224 15-90 (97)
9 1vig_A Vigilin; RNA-binding pr 99.4 8.1E-13 2.8E-17 106.5 6.6 66 153-219 4-70 (71)
10 2ctj_A Vigilin; K homology typ 99.3 1.3E-12 4.3E-17 111.4 7.2 71 152-223 15-87 (95)
11 2ctm_A Vigilin; K homology typ 99.3 2.3E-12 8E-17 109.7 8.6 73 151-224 14-88 (95)
12 2ctk_A Vigilin; K homology typ 99.3 2.3E-12 7.7E-17 111.5 7.5 70 153-223 16-86 (104)
13 2ctf_A Vigilin; K homology typ 99.3 7E-12 2.4E-16 108.1 7.9 69 153-224 26-95 (102)
14 1zzk_A Heterogeneous nuclear r 99.2 2.9E-11 9.8E-16 99.9 8.1 71 151-222 4-77 (82)
15 2opv_A KHSRP protein; KH domai 99.2 3E-11 1E-15 100.4 7.7 67 153-220 13-84 (85)
16 1x4n_A FAR upstream element bi 99.2 3.9E-11 1.3E-15 101.2 7.2 72 152-224 13-87 (92)
17 1wvn_A Poly(RC)-binding protei 99.2 2.8E-11 9.4E-16 99.9 6.1 72 150-222 2-76 (82)
18 1dtj_A RNA-binding neurooncolo 99.2 2.5E-11 8.7E-16 98.4 5.6 67 153-220 2-74 (76)
19 1x4m_A FAR upstream element bi 99.2 3.3E-11 1.1E-15 102.1 6.2 70 151-221 12-86 (94)
20 2axy_A Poly(RC)-binding protei 99.1 3.9E-11 1.3E-15 97.0 6.0 69 152-221 3-72 (73)
21 1j5k_A Heterogeneous nuclear r 99.1 4E-11 1.4E-15 100.5 6.1 72 150-222 10-84 (89)
22 2jzx_A Poly(RC)-binding protei 99.1 6.6E-11 2.3E-15 108.6 7.6 106 152-258 3-117 (160)
23 2p2r_A Poly(RC)-binding protei 99.1 4.8E-11 1.6E-15 97.0 5.7 69 152-221 3-74 (76)
24 1ec6_A RNA-binding protein NOV 99.1 6.2E-11 2.1E-15 98.9 6.3 70 153-223 2-77 (87)
25 3krm_A Insulin-like growth fac 99.1 2E-10 7E-15 105.7 9.4 105 153-258 2-113 (163)
26 1we8_A Tudor and KH domain con 99.1 1.1E-10 3.7E-15 100.7 6.7 69 152-221 13-86 (104)
27 2hh3_A KH-type splicing regula 99.1 1.8E-10 6.2E-15 99.9 7.6 71 153-224 10-83 (106)
28 2anr_A Neuro-oncological ventr 99.1 1.2E-10 4.1E-15 108.8 6.6 108 150-258 2-132 (178)
29 1j4w_A FUSE binding protein; s 99.1 2.5E-10 8.5E-15 106.4 8.2 105 153-258 2-132 (174)
30 3n89_A Defective in GERM LINE 99.1 1.3E-10 4.6E-15 120.8 7.0 66 151-217 27-102 (376)
31 2jvz_A KH type-splicing, FAR u 99.0 2.5E-10 8.6E-15 104.8 6.7 104 154-258 2-119 (164)
32 2hh2_A KH-type splicing regula 99.0 2.4E-10 8E-15 99.2 6.0 66 155-221 8-79 (107)
33 1k1g_A SF1-BO isoform; splicin 99.0 2.9E-10 1E-14 102.2 6.7 71 151-221 4-99 (131)
34 2yqr_A KIAA0907 protein; struc 98.9 2.4E-09 8.3E-14 94.6 7.5 70 154-223 12-101 (119)
35 3krm_A Insulin-like growth fac 98.9 2.7E-09 9.3E-14 98.1 8.0 72 152-224 83-159 (163)
36 2cpq_A FragIle X mental retard 98.8 1.9E-09 6.6E-14 90.9 4.2 67 150-218 11-78 (91)
37 2jvz_A KH type-splicing, FAR u 98.8 2.8E-09 9.6E-14 97.8 5.3 68 154-222 91-161 (164)
38 2jzx_A Poly(RC)-binding protei 98.8 7.4E-09 2.5E-13 94.9 6.4 69 152-221 87-159 (160)
39 2anr_A Neuro-oncological ventr 98.7 1.2E-08 4.2E-13 95.1 5.5 68 153-221 103-175 (178)
40 3n89_A Defective in GERM LINE 98.7 1.8E-08 6E-13 104.9 6.3 69 148-217 180-257 (376)
41 1j4w_A FUSE binding protein; s 98.7 1.5E-08 5E-13 94.3 5.2 65 153-218 103-173 (174)
42 2bl5_A MGC83862 protein, quaki 98.6 5.3E-08 1.8E-12 88.3 5.7 65 155-219 3-99 (140)
43 2qnd_A FMR1 protein; KH domain 98.5 7.4E-08 2.5E-12 87.6 5.3 65 156-221 69-142 (144)
44 2e3u_A PH-DIM2P, hypothetical 98.4 3.3E-07 1.1E-11 89.0 6.7 63 155-219 35-101 (219)
45 3u1k_A Polyribonucleotide nucl 98.2 7.9E-07 2.7E-11 98.4 4.4 64 153-219 566-629 (630)
46 2qnd_A FMR1 protein; KH domain 98.1 1.8E-06 6.1E-11 78.4 4.3 94 152-258 2-95 (144)
47 2e3u_A PH-DIM2P, hypothetical 97.9 1.5E-05 5.3E-10 77.3 6.4 53 164-221 139-191 (219)
48 1tua_A Hypothetical protein AP 97.7 4.1E-05 1.4E-09 72.8 6.8 64 155-220 5-72 (191)
49 1tua_A Hypothetical protein AP 97.5 5.4E-05 1.8E-09 72.0 4.4 54 163-221 107-160 (191)
50 4aid_A Polyribonucleotide nucl 97.5 2.1E-05 7.3E-10 88.1 0.9 65 154-221 570-634 (726)
51 3v69_A Protein filia; RNA-bind 96.8 0.0024 8.3E-08 57.2 7.1 68 156-224 58-127 (140)
52 2fsq_A ATU0111 protein; alpha- 96.5 0.0033 1.1E-07 61.8 6.7 168 288-490 43-226 (243)
53 3cdi_A Polynucleotide phosphor 95.2 0.0032 1.1E-07 70.8 0.0 65 154-221 560-624 (723)
54 1e3p_A Guanosine pentaphosphat 94.9 0.0015 5E-08 73.8 -4.1 62 155-219 599-660 (757)
55 2z0s_A Probable exosome comple 80.6 3.3 0.00011 40.0 7.1 63 156-221 150-212 (235)
56 2ba0_A Archeal exosome RNA bin 75.0 3.5 0.00012 39.7 5.5 61 156-220 138-198 (229)
57 2ja9_A Exosome complex exonucl 71.3 3.6 0.00012 38.1 4.4 58 157-217 94-152 (175)
58 2cxc_A NUSA; transcription ter 68.7 2.9 9.7E-05 37.7 3.0 37 154-190 36-72 (144)
59 2cxc_A NUSA; transcription ter 64.4 1.5 5E-05 39.6 0.1 38 153-190 102-139 (144)
60 2ctf_A Vigilin; K homology typ 62.3 0.091 3.1E-06 44.6 -7.8 51 200-258 5-55 (102)
61 2nn6_G Exosome complex exonucl 56.9 3.9 0.00013 40.9 1.7 59 156-217 212-270 (289)
62 2je6_I RRP4, exosome complex R 54.8 1.9 6.5E-05 42.2 -1.0 60 156-218 157-216 (251)
63 2asb_A Transcription elongatio 50.3 9.6 0.00033 37.3 3.3 39 154-192 184-222 (251)
64 2pt7_G HP1451, hypothetical pr 47.0 9.3 0.00032 34.6 2.4 102 155-296 34-137 (152)
65 1k0r_A NUSA; two component arr 44.2 13 0.00044 38.4 3.2 40 153-192 306-345 (366)
66 1hh2_P NUSA, N utilization sub 44.0 12 0.00042 38.2 3.1 39 153-191 302-340 (344)
67 3i24_A HIT family hydrolase; s 42.2 39 0.0013 30.1 5.8 83 348-430 46-139 (149)
68 1jh6_A Cyclic phosphodiesteras 36.5 41 0.0014 30.6 5.1 41 394-445 5-45 (189)
69 2o5a_A BH1328 protein; BHR21, 33.8 1.1E+02 0.0038 26.6 7.1 63 354-431 4-66 (125)
70 3udc_A Small-conductance mecha 33.0 1.8E+02 0.0061 28.2 9.4 71 356-431 193-267 (285)
71 2fsq_A ATU0111 protein; alpha- 32.3 27 0.00092 34.0 3.2 66 292-372 142-210 (243)
72 1j26_A Immature colon carcinom 30.6 24 0.00081 30.3 2.2 30 195-224 75-108 (112)
73 2id1_A Hypothetical protein; a 30.1 1.4E+02 0.0049 26.0 7.3 62 355-431 5-66 (130)
74 3ohe_A Histidine triad (HIT) p 30.0 1.1E+02 0.0039 26.4 6.7 81 347-427 45-136 (137)
75 1wh9_A 40S ribosomal protein S 29.9 20 0.00069 29.6 1.6 30 155-184 36-65 (92)
76 2vv5_A MSCS, small-conductance 29.9 1.6E+02 0.0055 28.6 8.5 83 342-431 186-268 (286)
77 3i0u_A Phosphothreonine lyase 24.5 2.6E+02 0.0087 26.3 8.1 79 340-432 80-172 (218)
78 3iev_A GTP-binding protein ERA 24.3 41 0.0014 32.9 3.0 37 153-189 239-284 (308)
79 3ups_A Iojap-like protein; PSI 22.9 1.6E+02 0.0054 26.0 6.2 63 354-431 20-82 (136)
80 3i4s_A Histidine triad protein 22.1 1.6E+02 0.0053 26.1 6.1 77 349-425 52-139 (149)
81 1fit_A FragIle histidine prote 21.6 2.5E+02 0.0085 24.1 7.3 47 335-384 36-82 (147)
82 4dh9_Y YAEJ; ribosome, YAEJ, r 21.3 1.1E+02 0.0038 27.1 4.9 56 169-226 23-102 (140)
83 3bo6_A Hydrophilic protein, VI 20.2 3.3E+02 0.011 25.7 7.9 90 339-442 81-184 (220)
84 3gku_A Probable RNA-binding pr 20.1 32 0.0011 33.1 1.1 36 154-189 92-127 (225)
No 1
>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A
Probab=99.97 E-value=1.8e-30 Score=247.61 Aligned_cols=203 Identities=21% Similarity=0.379 Sum_probs=162.6
Q ss_pred ccCCceEEEEecCCcchhhHhhhhccccccccccccCCCCCCCCCCCCcccccCCCCceEEeeccccCCHHHHHHHHHHH
Q 010252 285 VDQEHKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVL 364 (514)
Q Consensus 285 ~rpn~FVAv~i~~~~~~~~vk~~q~~i~~~~~~~~~~r~~~~~~~Gi~~s~fv~p~~LHLTL~fLgl~~eeev~~A~~~L 364 (514)
+++++||||.+.++++.+.|..+|+.+.- ..+|++ ..|+++++|||||.|||++++++++++.++|
T Consensus 1 ~~~r~Fial~~~~~~~~~~l~~~~~~l~~-------------~~~~~~-~~~v~~~~~HiTL~flg~~~~~~~~~l~~~l 66 (205)
T 2vfk_A 1 YQPNYFLSIPITNKKITAGIKVLQNSILR-------------QDNRLT-KAMVGDGSFHITLLVMQLLNEDEVNIGTDAL 66 (205)
T ss_dssp CCCCEEEEEECCCHHHHHHHHHHHHHHHH-------------HCGGGG-GGBCCTTCCEEEEEEECCCSHHHHHHHHHHH
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHHHHHh-------------cCcchH-HHhCCcCccEEEEEEEEcCCHHHHHHHHHHH
Confidence 46899999999987889999999987730 011332 3799999999999999999999999999999
Q ss_pred HHhHHhhhhhcCCCCeEEEecccccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCccccCCCCCceeeEE
Q 010252 365 KSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHAT 444 (514)
Q Consensus 365 ~~i~~~i~e~l~~~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~La~~L~~~f~~~Gl~~e~~~~r~fkPHiT 444 (514)
+++...+.+++..+||.|+|+|+|+|++ +|||+++.+.++.+.|.+|++.|.+.|..+|+... +.++|+||||
T Consensus 67 ~~~~~~~~~~~~~~pf~l~l~g~~~F~~-----~vl~~~v~~~~~~~~L~~L~~~l~~~~~~~g~~~~--~~~~f~PHiT 139 (205)
T 2vfk_A 67 LELKPFVEEILEGKHLTLPFHGIGTFQG-----QVGFVKLADGDHVSALLEIAETAKRTFQEKGILAG--ESRTFKPHLT 139 (205)
T ss_dssp HHHHHHHHHHTTTSCCEEEEEEEEEETT-----TEEEEEECCSHHHHHHHHHHHHHHHHHHTTTCCBC--CSSCCCCCEE
T ss_pred HHHHHHHHHHhCCCCcEEEEechhhCCC-----cEEEEeecccccHHHHHHHHHHHHHHHHHcCCCcC--CCCCcceEEE
Confidence 9987666667767999999999999987 79999998532347899999999999999999542 2689999999
Q ss_pred eeeecccccccCCCccccccHHHHHHHhCCCccccEEecEEEEeeec-cCCCCCceeEEEEEeCCCC
Q 010252 445 LMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRF-VYDESGFYHCCASIPFPEN 510 (514)
Q Consensus 445 Lar~k~~~~~~~~~~~~~fda~~il~~~~~~~fG~~~V~eI~Ls~l~-~~~~~g~Y~~lasi~L~~~ 510 (514)
|+|.++...... .....++ .++++.+.++.||.+.|++|+|+++. ..+.+|+|.++++|+|++.
T Consensus 140 lar~~~~~~~~~-~~~~~~~-~~~l~~~~~~~~~~~~v~~i~L~~~~~~~~~~g~Y~~~~~~~L~~~ 204 (205)
T 2vfk_A 140 FMKLSKAPMLWK-KGVRKIE-PGLYEQFIDHRFGEEILYQIDLCSMLKKKQSNGYYHCESSIVIGEK 204 (205)
T ss_dssp EEEGGGCHHHHH-TTCSSCC-GGGGGGGTTCEEEEEECCEEEEEESSSCCCTTSCCCEEEEEECSSC
T ss_pred EEecccchhhhh-ccccccC-HHHHHHhcCCcCcEEEeCEEEEEEcCCCCCCCCcEEEEEEEecCCC
Confidence 999865310000 0011233 36778889999999999999998865 4456799999999999864
No 2
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=99.95 E-value=1.5e-27 Score=223.30 Aligned_cols=180 Identities=17% Similarity=0.322 Sum_probs=150.2
Q ss_pred ceEEEEecCCcchhhHhhhhccccccccccccCCCCCCCCCCCCcccccCCCCceEEeeccccCCHHHHHHHHHHHHHhH
Q 010252 289 HKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSIS 368 (514)
Q Consensus 289 ~FVAv~i~~~~~~~~vk~~q~~i~~~~~~~~~~r~~~~~~~Gi~~s~fv~p~~LHLTL~fLgl~~eeev~~A~~~L~~i~ 368 (514)
+||||.+.. ++.+.+..+|+.+. ..+. ...|++|++|||||.|||++++++++++.++|+++.
T Consensus 3 ~Fial~~p~-~~~~~l~~~~~~l~---------------~~~~-~~~~v~~~~lHiTL~flg~~~~~~~~~l~~~l~~~~ 65 (184)
T 1vgj_A 3 AFIAIDVNE-SVRDSLVRAQDYIG---------------SKEA-KIKFVERENLHITLKFLGEITEEQAEEIKNILKKIA 65 (184)
T ss_dssp EEEEEECCH-HHHHHHHHHHHHHC---------------SSSE-EEEECCGGGCEEEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCH-HHHHHHHHHHHHHh---------------hcCC-CcEecCccccEEEEEeecCCCHHHHHHHHHHHHHHH
Confidence 799999986 67899999998773 1121 237999999999999999999999999999998873
Q ss_pred HhhhhhcCCCCeEEEecccccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCccccCCCCCceeeEEeeee
Q 010252 369 SKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNI 448 (514)
Q Consensus 369 ~~i~e~l~~~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~La~~L~~~f~~~Gl~~e~~~~r~fkPHiTLar~ 448 (514)
. ..+||.|+|.|+|+|++ +++|||||+++++ + ..|.+|++.|.+.+...|+..+ . +|+|||||+|.
T Consensus 66 ~------~~~pf~l~l~g~g~F~~-~~~p~vl~~~v~~--~-~~L~~L~~~l~~~l~~~g~~~~---~-~f~PHiTLar~ 131 (184)
T 1vgj_A 66 E------KYKKHEVKVKGIGVFPN-PNYIRVIWAGIEN--D-EIIREMAREIEDELAKLGFKKE---G-NFVAHITLGRV 131 (184)
T ss_dssp T------TSBCEEEEEEEEEEEEC-SSSEEEEEEEEET--C-HHHHHHHHHHHHHHHTTTCCCC---C-CCCCEEEEEEE
T ss_pred c------cCCCeEEEEeeEeeCCC-CCCCcEEEEEecC--C-HHHHHHHHHHHHHHHHcCCCCC---C-CccceEEEEee
Confidence 2 35899999999999997 7889999999985 2 7899999999999999999875 4 89999999997
Q ss_pred cccccccCCCccccccHHHHHHHhCCCccccEEecEEEEeeeccCCCCCceeEEEEEeC
Q 010252 449 RHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDESGFYHCCASIPF 507 (514)
Q Consensus 449 k~~~~~~~~~~~~~fda~~il~~~~~~~fG~~~V~eI~Ls~l~~~~~~g~Y~~lasi~L 507 (514)
+.... ..++.++++.+.++.+|.+.|++|+|+++.....++.|.++++|+|
T Consensus 132 ~~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~L~~s~~~~~g~~y~~l~~~~L 182 (184)
T 1vgj_A 132 KFVKD--------KLGLTMKLKELANEDFGSFVVDAIELKKSTLTPKGPIYETLARFEL 182 (184)
T ss_dssp EEESC--------HHHHHHHHHHTTTCEEEEEEECEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred cccCc--------HHHHHHHHHHhcCCCCCcEEEeEEEEEEeeecCCCCceeEEEEEeC
Confidence 53221 0135577888889999999999999976654444699999999999
No 3
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2
Probab=99.91 E-value=6.6e-24 Score=202.35 Aligned_cols=174 Identities=16% Similarity=0.173 Sum_probs=139.1
Q ss_pred ceEEEEecCCcchhhHhhhhccccccccccccCCCCCCCCCCCCcccccCCCCceEEeeccccCCHHHHHHHHHHHHHhH
Q 010252 289 HKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSIS 368 (514)
Q Consensus 289 ~FVAv~i~~~~~~~~vk~~q~~i~~~~~~~~~~r~~~~~~~Gi~~s~fv~p~~LHLTL~fLgl~~eeev~~A~~~L~~i~ 368 (514)
+||||.+.. ++.+.|..+|+.+. . +.. ..|++++++||||.|+|++++++++++.++|.++.
T Consensus 3 lFial~~p~-~~~~~l~~~~~~l~---------------~-~~~-~r~v~~~~~HiTL~flgev~~~~~~~l~~~l~~~~ 64 (198)
T 1iuh_A 3 LFYAVFLPE-EVRAALVEAQTKVR---------------P-FRG-WKPVPPHQLHLTLLFLGERPEEELPDYLALGHRLA 64 (198)
T ss_dssp EEEEEECCH-HHHHHHHHHHGGGT---------------T-CTT-EEECCGGGCEEEEEEEEECCGGGHHHHHHHHHHHH
T ss_pred EEEEEeCCH-HHHHHHHHHHHHhh---------------h-hcC-CcccCCCCCEEEEEeCCcCCHHHHHHHHHHHHHHh
Confidence 799999975 67899999998763 1 111 36999999999999999999999999999998874
Q ss_pred HhhhhhcCCCCeEEEecccccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHC-C-----CccccCCCCCceee
Q 010252 369 SKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEA-G-----LVFHRDYNKKLKLH 442 (514)
Q Consensus 369 ~~i~e~l~~~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~La~~L~~~f~~~-G-----l~~e~~~~r~fkPH 442 (514)
. ..+||.|+|.|+|+|++ ..+|||||+++ . ...|.+|++.|.+.+... | +..+ .++|+||
T Consensus 65 ~------~~~pf~l~l~g~g~F~~-~~~p~vl~l~v-~---~~~L~~L~~~l~~~l~~~~g~~~~~~~~~---~~~f~PH 130 (198)
T 1iuh_A 65 R------LEAPFRARLRGTGYFPN-EGTPRVWFAKA-E---AEGFLRLAEGLRAGVEELLGEEAVRIPGW---DKPFKPH 130 (198)
T ss_dssp H------HSCCEEEEEEEEEEESS-SSSCSEEEEEE-E---CHHHHHHHHHHHHHHHHHHGGGGGGSTTT---TSCCCCE
T ss_pred c------cCCCeEEEEcceEECCC-CCCCCEEEEEC-C---CHHHHHHHHHHHHHHHHhcCCCcccccCC---CCCCCCc
Confidence 2 25899999999999987 67899999999 4 478999999999999999 9 8765 5799999
Q ss_pred EEeeeecccccccCCCccccccHHHHHHHhCCCccccEEecEEEEeeeccCCCCCceeEEEEEeCCCC
Q 010252 443 ATLMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDESGFYHCCASIPFPEN 510 (514)
Q Consensus 443 iTLar~k~~~~~~~~~~~~~fda~~il~~~~~~~fG~~~V~eI~Ls~l~~~~~~g~Y~~lasi~L~~~ 510 (514)
|||+|.+.... ++.. ... .| .+.|++|+|.+......++.|.++++|+|.+.
T Consensus 131 iTLar~~~~~~----------~l~~---~l~--~~-~~~v~~~~L~~S~l~~~G~~y~~l~~~~L~~~ 182 (198)
T 1iuh_A 131 ITLARRKAPAP----------RVPP---VLF--GL-EWPVEGFALVRSELKPKGPVYTVLEKFSLRGE 182 (198)
T ss_dssp EEEEEESSCCC----------CCCC---CCC--CE-EEEECEEEEEEEEECSSSEEEEEEEEEECCCC
T ss_pred EEeEeccCcch----------hHHH---hhc--Cc-eEEecEEEEEEEEeCCCCCeeeEEEEEECCCC
Confidence 99999753211 1001 111 34 78999999966544334589999999999754
No 4
>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}
Probab=99.82 E-value=2.8e-20 Score=172.00 Aligned_cols=166 Identities=14% Similarity=0.171 Sum_probs=128.4
Q ss_pred ceEEEEecCCcchhhHhhhhccccccccccccCCCCCCCCCCCCcccccCCCCceEEeeccccCCHHHHHHHHHHHHHhH
Q 010252 289 HKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSIS 368 (514)
Q Consensus 289 ~FVAv~i~~~~~~~~vk~~q~~i~~~~~~~~~~r~~~~~~~Gi~~s~fv~p~~LHLTL~fLgl~~eeev~~A~~~L~~i~ 368 (514)
+||||.+.. ++.+.+..+|+.+. .+ ..|++| ||||.|+|++++++++++.++|+++.
T Consensus 3 ~Fiai~~~~-~~~~~l~~~~~~~~----------------~~---~~~v~p---HiTL~f~g~~~~~~~~~l~~~l~~~~ 59 (171)
T 2d4g_A 3 YGIVLFPSK-KLQDLANSYRKRYD----------------PS---YSLIPP---HLTLRASFECAEEKADQLVSHLRNIA 59 (171)
T ss_dssp EEEEBCCCH-HHHHHHHHHHHHHC----------------GG---GGTSCS---CBCCSSCEECCGGGHHHHHHHHHHHH
T ss_pred EEEEEeCCH-HHHHHHHHHHHHhC----------------cc---cCCCCC---eEEeecCCcCChHHHHHHHHHHHHHH
Confidence 799999875 67888999987652 01 258888 99999999999999999999998874
Q ss_pred HhhhhhcCCCCeEEEecccccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCccccCCCCCceeeEEeeee
Q 010252 369 SKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNI 448 (514)
Q Consensus 369 ~~i~e~l~~~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~La~~L~~~f~~~Gl~~e~~~~r~fkPHiTLar~ 448 (514)
. ..+||.|+|.|+|+|+. . ..|||+++++ ...|.+|++.|.+.|... .+ .++|+|||||+|.
T Consensus 60 ~------~~~pf~l~l~~~g~F~~--~-~~vl~l~~~~---~~~L~~L~~~l~~~~~~~---~~---~~~f~PHiTLar~ 121 (171)
T 2d4g_A 60 K------ESHPLVLKMTKYSSFAP--V-NNVIYIKAEP---TEELKTLNEKLYTGVLAG---EQ---EYNFVPHVTVGQN 121 (171)
T ss_dssp H------TCCCEEEEEEEEEECTT--T-CCCEEEEECC---CHHHHHHHHHTTSGGGCS---CC---CSCCCCEEEEECS
T ss_pred c------cCCCEEEEECCcEEeCC--C-CcEEEEEccC---ChHHHHHHHHHHhccccc---cc---CCCCCCeEEeecC
Confidence 2 35899999999999973 1 1399999985 378999999998876541 22 5789999999984
Q ss_pred cccccccCCCccccccHHHHHHHhCCCcc-ccEEecEEEEeeeccCCCCCceeEEEEEeCCC
Q 010252 449 RHKKRRKGTRRVDYFDARDIFKQFGSKEW-GEYLIKEAHLSQRFVYDESGFYHCCASIPFPE 509 (514)
Q Consensus 449 k~~~~~~~~~~~~~fda~~il~~~~~~~f-G~~~V~eI~Ls~l~~~~~~g~Y~~lasi~L~~ 509 (514)
... -++..+++.+....+ +.+.|++|+|... ..++.|.++++++|.+
T Consensus 122 ~~~-----------~~~~~~~~~~~~~~~~~~~~v~~i~L~~s---~~g~~y~~l~~~~L~~ 169 (171)
T 2d4g_A 122 LSD-----------DEHSDVLGQLKMQEVSHEEIVDRFHLLYQ---LENGSWTVYETFLLGR 169 (171)
T ss_dssp CCH-----------HHHHHHHHHHTTSCCCEEEEECEEEEEEE---CTTSCEEEEEEEECC-
T ss_pred CCH-----------HHHHHHHHHhcCCCCceeEEECeEEEEEE---CCCCcEEEEEEEecCC
Confidence 311 123466777544444 5899999999876 3468999999999965
No 5
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=99.75 E-value=9.2e-18 Score=159.06 Aligned_cols=171 Identities=9% Similarity=-0.005 Sum_probs=128.4
Q ss_pred ceEEEEecCCcchhhHhhhhccccccccccccCCCCCCCCCCCCcccccCCCCceEEeeccccCCHHHHHHHHHHHHHhH
Q 010252 289 HKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSIS 368 (514)
Q Consensus 289 ~FVAv~i~~~~~~~~vk~~q~~i~~~~~~~~~~r~~~~~~~Gi~~s~fv~p~~LHLTL~fLgl~~eeev~~A~~~L~~i~ 368 (514)
.|+++. .+++.+.|..+++.+. ...+.++.++|||| ||.++.+ ++.+.+.|+++.
T Consensus 10 ~f~~~p--p~~~~~~l~~~~~~l~--------------------~~~~~~~~~~HiTL--lG~~~~~-~~~l~~~L~~~a 64 (189)
T 1jh6_A 10 SVWALP--DEESEPRFKKLMEALR--------------------SEFTGPRFVPHVTV--AVSAYLT-ADEAKKMFESAC 64 (189)
T ss_dssp EEEEEE--CTTTHHHHHHHHHHHH--------------------HHHTCCCCCCCEEE--EEEEEEC-HHHHHHHHHHHH
T ss_pred EEEEEC--CHHHHHHHHHHHHHHH--------------------HHcCCCCCCCEEEE--eCCCCCC-HHHHHHHHHHHH
Confidence 466666 6678899999988763 11245778999999 8999776 888888888874
Q ss_pred HhhhhhcCCCCeEEEecccccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCccccCCCCCceeeEEeeee
Q 010252 369 SKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNI 448 (514)
Q Consensus 369 ~~i~e~l~~~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~La~~L~~~f~~~Gl~~e~~~~r~fkPHiTLar~ 448 (514)
. ..+||.|+|.|+|+|. ..|||||++|++ ...|.+|++.+++. +|+.. .++|.|||||+|.
T Consensus 65 ~------~~~pf~l~l~g~g~~~---~~~rvlw~~v~~---~~~L~~L~~~v~~~---~g~~~----~~~f~PHlTLar~ 125 (189)
T 1jh6_A 65 D------GLKAYTATVDRVSTGT---FFFQCVFLLLQT---TPEVMEAGEHCKNH---FNCST----TTPYMPHLSLLYA 125 (189)
T ss_dssp H------TCBCEEEEEEEEEEEE---ETTEEEEEEECC---CHHHHHHHHHHHHH---TTCCC----CSCCCCEEEEECC
T ss_pred h------hCCCeEEEEcceeccC---ccceEEEEeecC---CHHHHHHHHHHHHH---hCCCC----CCCCCCeEEEEEe
Confidence 2 2589999999999963 367999999985 37899999999886 68875 3799999999986
Q ss_pred cccccccCCCccccccHHHHHHHh-CCCccccEEecEEEEeeecc-CCCCCceeEEEEEeCCCC
Q 010252 449 RHKKRRKGTRRVDYFDARDIFKQF-GSKEWGEYLIKEAHLSQRFV-YDESGFYHCCASIPFPEN 510 (514)
Q Consensus 449 k~~~~~~~~~~~~~fda~~il~~~-~~~~fG~~~V~eI~Ls~l~~-~~~~g~Y~~lasi~L~~~ 510 (514)
+.... ..-++.+.++.+ .++.++.|.|++|.|.+... .+.-.-|..+++++|+..
T Consensus 126 ~~~~~-------~~~~~~~~l~~~~~~~~~~~~~v~~~~L~~s~~~~~~~~~w~l~~~~~~~~~ 182 (189)
T 1jh6_A 126 ELTEE-------EKKNAQEKAYTLDSSLDGLSFRLNRLALCKTDTEDKTLETWETVAVCNLNPG 182 (189)
T ss_dssp CCCHH-------HHHHHHHHHHHHCTTCTTCEEEEEEEEEEECCTTCTTCTTCEEEEEEECBC-
T ss_pred cCCHH-------HHHHHHHHHHhhccCCCCCcEEeeEEEEEEeCCCCCccCeEEEEEEEEcCCC
Confidence 42211 012344556556 56788999999999966644 224578999999999753
No 6
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.47 E-value=6.7e-14 Score=118.81 Aligned_cols=73 Identities=26% Similarity=0.417 Sum_probs=67.5
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010252 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (514)
Q Consensus 151 ~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~-~~~I~I~G~s~~~v~~A~~~I~~iv~~~~~ 224 (514)
..+++..+.||+++||+|||+||.++|+|+++|||+|+||+.++ ++.|+|+|. ++++++|++.|+.++.+..+
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~-~e~v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT-KEGIEKARHEVLLISAEQDK 87 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEEC-HHHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEEC-HHHHHHHHHHHHHHhhcccc
Confidence 56889999999999999999999999999999999999998654 578999998 89999999999999998655
No 7
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=2.3e-13 Score=113.16 Aligned_cols=71 Identities=27% Similarity=0.436 Sum_probs=64.4
Q ss_pred CCCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 010252 150 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 221 (514)
Q Consensus 150 ~~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~iv~~ 221 (514)
...+.+..+.||.+++|+||||+|+|+|+|+++|||+|+||+.++...|+|+|. +++|++|++.|+.++..
T Consensus 6 ~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~ItG~-~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 6 SGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGM-PENVDRAREEIEAHITL 76 (83)
T ss_dssp SCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEEEEC-TTTHHHHHHHHHHHHHS
T ss_pred CCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCCCCCeEEEEcC-HHHHHHHHHHHHHHHhc
Confidence 346788999999999999999999999999999999999998777778999996 69999999999997654
No 8
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.38 E-value=1.1e-12 Score=112.11 Aligned_cols=72 Identities=26% Similarity=0.377 Sum_probs=65.5
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC----CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010252 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK----EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (514)
Q Consensus 152 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~----~~~I~I~G~s~~~v~~A~~~I~~iv~~~~~ 224 (514)
..++..+.||+++|+.||||||+++++|+++|||+|+||..++ .+.|+|+|. ++++.+|++.|+.|+.+...
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~-~e~v~~A~~~I~~iv~e~e~ 90 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY-EKNTEAARDAILRIVGELEQ 90 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC-HHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHHHHh
Confidence 4679999999999999999999999999999999999998764 358999997 89999999999999988654
No 9
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.36 E-value=8.1e-13 Score=106.48 Aligned_cols=66 Identities=18% Similarity=0.405 Sum_probs=59.5
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHH
Q 010252 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAII 219 (514)
Q Consensus 153 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~-~~~I~I~G~s~~~v~~A~~~I~~iv 219 (514)
-.+..+.||+++||.|||+||.++++|+++|||+|+||..++ ++.|+|+|+ .+++++|++.|+.++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~-~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGD-PQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEES-SHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcC-HHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999998764 458999998 689999999998764
No 10
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.34 E-value=1.3e-12 Score=111.35 Aligned_cols=71 Identities=24% Similarity=0.396 Sum_probs=64.2
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHh-CcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHHhh
Q 010252 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEM-GVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAV 223 (514)
Q Consensus 152 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT-~~kI~iP~~~~-~~~I~I~G~s~~~v~~A~~~I~~iv~~~~ 223 (514)
...+..+.||+++|+.|||+||.++|+|+++| ||+|+||..++ ++.|+|.|++ .+|++|+++|+.|+.+..
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~-~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPS-SDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCH-HHHHHHHHHHHHHHHHHS
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCH-HHHHHHHHHHHHHHhhhh
Confidence 35567899999999999999999999999999 99999999775 5689999985 599999999999999854
No 11
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.34 E-value=2.3e-12 Score=109.65 Aligned_cols=73 Identities=23% Similarity=0.307 Sum_probs=65.9
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC--CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010252 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK--EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (514)
Q Consensus 151 ~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~--~~~I~I~G~s~~~v~~A~~~I~~iv~~~~~ 224 (514)
..+.+..+.||+++||.|||++|.++|+|+++|||+|+||..++ .+.|+|+|. .++|++|++.|+.|+.+..+
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~-~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGL-PENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESC-HHHHHHHHHHHHHHHHHHHT
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcC-HHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999998764 347999997 69999999999999998665
No 12
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.32 E-value=2.3e-12 Score=111.49 Aligned_cols=70 Identities=26% Similarity=0.399 Sum_probs=64.1
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHHhh
Q 010252 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAV 223 (514)
Q Consensus 153 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~-~~~I~I~G~s~~~v~~A~~~I~~iv~~~~ 223 (514)
.....+.||+++||.|||+||.++|+|+++|||+|+||..+. ++.|+|+|. .+++++|++.|+.++.+..
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~-~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL-AANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC-HHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC-HHHHHHHHHHHHHHHhhHH
Confidence 578899999999999999999999999999999999998765 458999997 5999999999999997744
No 13
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.27 E-value=7e-12 Score=108.07 Aligned_cols=69 Identities=30% Similarity=0.446 Sum_probs=63.5
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHH-hCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010252 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKE-MGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (514)
Q Consensus 153 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~e-T~~kI~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~iv~~~~~ 224 (514)
..+.++.||+.+|++|||++|+++|+|+++ ++++|+||+ .++.|+|+|+ ++.|++|+.+|+.++++...
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~--~~~~ItI~G~-~~~V~~a~~~I~~~v~el~~ 95 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE--GEDKITLEGP-TEDVSVAQEQIEGMVKDLIN 95 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS--SSCEEEEEEC-HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC--CCCEEEEECC-HHHHHHHHHHHHHHHHHHHh
Confidence 378899999999999999999999999997 699999998 4578999998 89999999999999998765
No 14
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.21 E-value=2.9e-11 Score=99.85 Aligned_cols=71 Identities=21% Similarity=0.283 Sum_probs=63.4
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHh
Q 010252 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEA 222 (514)
Q Consensus 151 ~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~iv~~~ 222 (514)
..+.+..+.||.++++.||||+|+++|+|+++|||+|+|+.... .+.|+|+|. +++|++|+..|+.++.+.
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-QDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEEC-HHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeC-HHHHHHHHHHHHHHHHhc
Confidence 34788999999999999999999999999999999999987522 357999995 899999999999999874
No 15
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.19 E-value=3e-11 Score=100.42 Aligned_cols=67 Identities=25% Similarity=0.374 Sum_probs=59.6
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHH
Q 010252 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIA 220 (514)
Q Consensus 153 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~-----~~~I~I~G~s~~~v~~A~~~I~~iv~ 220 (514)
.....+.||.+++|.||||+|+|+|+|+++|||+|+|+..+. ...|+|+| +++.+++|++.|+.++.
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G-~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDILR 84 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEE-CHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999999999999999998543 12499999 78999999999999875
No 16
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.17 E-value=3.9e-11 Score=101.24 Aligned_cols=72 Identities=22% Similarity=0.391 Sum_probs=64.4
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010252 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (514)
Q Consensus 152 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~iv~~~~~ 224 (514)
...+..+.||.++++.||||+|+++++|+++|||+|+|+.... ...|+|+|. .++|++|+..|+.++.+.+.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~-~e~v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT-PESVQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHhccc
Confidence 4578899999999999999999999999999999999997533 357999997 89999999999999998654
No 17
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.17 E-value=2.8e-11 Score=99.90 Aligned_cols=72 Identities=17% Similarity=0.308 Sum_probs=62.7
Q ss_pred CCCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHh
Q 010252 150 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEA 222 (514)
Q Consensus 150 ~~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~iv~~~ 222 (514)
.+.+.+..+.||.+++|.||||+|+++++|+++|||+|+|+.... .+.|+|+|. .++|.+|+..|+.++.+.
T Consensus 2 ~g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 2 LGSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGS-AASISLAQYLINARLSSE 76 (82)
T ss_dssp CTTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHTC--
T ss_pred CCCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHhh
Confidence 456788999999999999999999999999999999999987422 457999996 599999999999998763
No 18
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.16 E-value=2.5e-11 Score=98.39 Aligned_cols=67 Identities=18% Similarity=0.321 Sum_probs=59.5
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHHHH
Q 010252 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIA 220 (514)
Q Consensus 153 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~------~~~I~I~G~s~~~v~~A~~~I~~iv~ 220 (514)
+.+..+.||.+++|.||||+|+++++|+++|||+|+|++.++ .+.|.|+|. ++++.+|+..|+.++.
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVT 74 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEES-HHHHHHHHHHHHHHCC
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999998532 357999997 8999999999998764
No 19
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.16 E-value=3.3e-11 Score=102.13 Aligned_cols=70 Identities=23% Similarity=0.378 Sum_probs=63.2
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHHH
Q 010252 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (514)
Q Consensus 151 ~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~-----~~~I~I~G~s~~~v~~A~~~I~~iv~~ 221 (514)
..+....+.||.++++.||||+|+++|+|+++|||+|+|+..+. ...|+|+| +++.|++|++.|+.++.+
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG-DPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEE-CTTTHHHHHHHHHHHHCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999987643 34699999 589999999999999876
No 20
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.15 E-value=3.9e-11 Score=97.03 Aligned_cols=69 Identities=25% Similarity=0.333 Sum_probs=61.8
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHH
Q 010252 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (514)
Q Consensus 152 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~-~~~I~I~G~s~~~v~~A~~~I~~iv~~ 221 (514)
.+....+.||.+.+|.||||||+++|+|+++|||+|+|+..+. ...|.|+|. .+++.+|...|..++.+
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~-~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC-HHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC-HHHHHHHHHHHHHHHhc
Confidence 4578899999999999999999999999999999999998644 346899997 89999999999988764
No 21
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.14 E-value=4e-11 Score=100.53 Aligned_cols=72 Identities=21% Similarity=0.281 Sum_probs=64.1
Q ss_pred CCCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHh
Q 010252 150 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEA 222 (514)
Q Consensus 150 ~~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~iv~~~ 222 (514)
...+.+..+.||.++++.||||+|+++|+|+++|||+|+|+.... .+.|+|+|. +++|++|+..|+.++.+.
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~-~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-QDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEE-HHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcC-HHHHHHHHHHHHHHHHhh
Confidence 345788899999999999999999999999999999999987422 467999997 899999999999999874
No 22
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.13 E-value=6.6e-11 Score=108.63 Aligned_cols=106 Identities=21% Similarity=0.215 Sum_probs=89.7
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHHhhhC-----
Q 010252 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAVES----- 225 (514)
Q Consensus 152 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~-~~~I~I~G~s~~~v~~A~~~I~~iv~~~~~~----- 225 (514)
......+.||...+|.||||+|+++|+|+++|||+|+|+..+. ...|+|+|. .++|.+|+..|..++.+....
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i~e~~~~~~~~~ 81 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMIIDKLEEDISSSMTNS 81 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEE-HHHHHHHHHHHHHHHHHHHTSCCCSS
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeC-HHHHHHHHHHHHHHHHhhccccCCCC
Confidence 4567899999999999999999999999999999999998644 357899997 799999999999887663221
Q ss_pred ---CCCcceEEEEeccccchhhhccHHHHHHHHhcc
Q 010252 226 ---PSLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (514)
Q Consensus 226 ---~k~~~tHFIsIPl~~hp~I~~~~~~f~~sIl~~ 258 (514)
+..+.+..+.||-..+..|+|+.+..++.|.+.
T Consensus 82 ~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~ 117 (160)
T 2jzx_A 82 TAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 117 (160)
T ss_dssp SCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHH
Confidence 122457788899988999999999999999876
No 23
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.13 E-value=4.8e-11 Score=97.00 Aligned_cols=69 Identities=17% Similarity=0.334 Sum_probs=61.2
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHH
Q 010252 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (514)
Q Consensus 152 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~iv~~ 221 (514)
...+..+.||.+++|.||||+|+++++|+++|||+|+|+.... .+.|.|+|. +++|.+|+..|+.++.+
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGS-AASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeC-HHHHHHHHHHHHHHHHc
Confidence 3577899999999999999999999999999999999987422 467999997 89999999999988754
No 24
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.12 E-value=6.2e-11 Score=98.86 Aligned_cols=70 Identities=17% Similarity=0.294 Sum_probs=62.0
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHHHHHhh
Q 010252 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAEAV 223 (514)
Q Consensus 153 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~------~~~I~I~G~s~~~v~~A~~~I~~iv~~~~ 223 (514)
+.+..+.||.+.+|.||||+|+++++|+++|||+|+|+..++ .+.|+|+|. .+++.+|+..|..++.+..
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS-HHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhccc
Confidence 356789999999999999999999999999999999997532 357999996 8999999999999987743
No 25
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.10 E-value=2e-10 Score=105.67 Aligned_cols=105 Identities=18% Similarity=0.272 Sum_probs=87.1
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC----CCcEEEEccChhHHHHHHHHHHHHHHHhhh-CC-
Q 010252 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK----EDSIIIEGNSTDSVAKASEKIQAIIAEAVE-SP- 226 (514)
Q Consensus 153 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~----~~~I~I~G~s~~~v~~A~~~I~~iv~~~~~-~~- 226 (514)
+-+..+.||.+.+|.||||+|+++++|+++|||+|+|+..+. ...|+|+| +.+++.+|+..|..++.+... .|
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G-~~e~v~~A~~~I~~~~~e~~~~~~~ 80 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITG-PPEAQFKAQGRIYGKLKEENFFGPK 80 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEE-CHHHHHHHHHHHHHHHHHTTSSCSS
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHhcccccccc
Confidence 446789999999999999999999999999999999988542 24599999 489999999999999887421 11
Q ss_pred -CCcceEEEEeccccchhhhccHHHHHHHHhcc
Q 010252 227 -SLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (514)
Q Consensus 227 -k~~~tHFIsIPl~~hp~I~~~~~~f~~sIl~~ 258 (514)
....+..+.||-..+..|+|+.+..++.|.+.
T Consensus 81 ~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~ 113 (163)
T 3krm_A 81 EEVKLETHIRVPASAAGRVIGKGGKTVNELQNL 113 (163)
T ss_dssp CCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHH
T ss_pred cCCceEEEEEcChhheeeEEcCCChHHHHHHHH
Confidence 11234567799999999999999999999875
No 26
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.09 E-value=1.1e-10 Score=100.69 Aligned_cols=69 Identities=25% Similarity=0.253 Sum_probs=61.3
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHHH
Q 010252 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (514)
Q Consensus 152 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~-----~~~I~I~G~s~~~v~~A~~~I~~iv~~ 221 (514)
......+.||.+++|.||||+|+++|+|+++|||+|+|+...+ .+.|+|+|. .+.|++|++.|+.++.+
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~-~~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGT-QKEVAAAKHLILEKVSE 86 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEE-HHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcC-HHHHHHHHHHHHHHHhh
Confidence 3467899999999999999999999999999999999997543 467999997 56899999999999876
No 27
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.08 E-value=1.8e-10 Score=99.89 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=61.2
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010252 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (514)
Q Consensus 153 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~iv~~~~~ 224 (514)
..+..+.||.++++.||||+|+|+|+|+++|+|+|+|+.... ...|+|+|. +++|++|++.|+.++.+...
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~-~e~v~~A~~~I~~ii~~~~~ 83 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARIINDLLQSLRS 83 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESS-HHHHHHHHHHHHHHHHHHC-
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHhcccc
Confidence 447899999999999999999999999999999999986443 236999996 89999999999999988554
No 28
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.07 E-value=1.2e-10 Score=108.83 Aligned_cols=108 Identities=22% Similarity=0.232 Sum_probs=89.1
Q ss_pred CCCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHHHHHhh
Q 010252 150 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAEAV 223 (514)
Q Consensus 150 ~~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~------~~~I~I~G~s~~~v~~A~~~I~~iv~~~~ 223 (514)
..++++..+.||..++|.||||+|+++|+|+++|||+|+|+..++ ...|+|+|. .++|.+|+..|..++.+..
T Consensus 2 l~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~-~~~v~~A~~~I~~~~~~~~ 80 (178)
T 2anr_A 2 LGSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT-IEALNAVHGFIAEKIREMP 80 (178)
T ss_dssp -CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEEC-HHHHHHHHHHHHHHHTCCC
T ss_pred CCCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeC-HHHHHHHHHHHHHHHhccC
Confidence 356789999999999999999999999999999999999987542 236899996 7999999999998886531
Q ss_pred hC-----------------CCCcceEEEEeccccchhhhccHHHHHHHHhcc
Q 010252 224 ES-----------------PSLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (514)
Q Consensus 224 ~~-----------------~k~~~tHFIsIPl~~hp~I~~~~~~f~~sIl~~ 258 (514)
.. +....+..+.||...+..|+|+.+..++.|.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~ 132 (178)
T 2anr_A 81 QNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQ 132 (178)
T ss_dssp CC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred CccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHH
Confidence 10 001246778899998999999999999999876
No 29
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.06 E-value=2.5e-10 Score=106.39 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=86.7
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHhhhCC---
Q 010252 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAVESP--- 226 (514)
Q Consensus 153 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~iv~~~~~~~--- 226 (514)
..+..+.||..++|.||||+|+++|+|+++|||+|+|+.... ...|.|+|. .++|.+|+..|..++.+.....
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~~~~~~~~~~~~ 80 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGP-PDRAQHAAEIITDLLRSVQAGNPGG 80 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEEC-HHHHHHHHHHHHHHHHHHC------
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHhcccCCCCC
Confidence 467899999999999999999999999999999999975322 246899997 7999999999999998753210
Q ss_pred --------------------CCcceEEEEeccccchhhhccHHHHHHHHhcc
Q 010252 227 --------------------SLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (514)
Q Consensus 227 --------------------k~~~tHFIsIPl~~hp~I~~~~~~f~~sIl~~ 258 (514)
....+..+.||-..+..|+|+.+..++.|.+.
T Consensus 81 ~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~ 132 (174)
T 1j4w_A 81 PGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQ 132 (174)
T ss_dssp -----------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHH
T ss_pred CCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHH
Confidence 00136677899998999999999999999876
No 30
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.06 E-value=1.3e-10 Score=120.77 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=60.7
Q ss_pred CCCeEEEEeccccccccccCCCc--hhHHHHHHHhCcEEEcCCCC--------CCCcEEEEccChhHHHHHHHHHHH
Q 010252 151 AERHSLSVEVGASVIRFIKGKEG--STQKKFEKEMGVKIILPSSK--------KEDSIIIEGNSTDSVAKASEKIQA 217 (514)
Q Consensus 151 ~~~~~~~v~Vp~~~~~~IIGk~G--~t~k~iE~eT~~kI~iP~~~--------~~~~I~I~G~s~~~v~~A~~~I~~ 217 (514)
.++++.+++||+.+|++|||||| +++++|.+||||+|+||..+ .++.|+|+|. +++|++|+.+|+.
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~-~enVE~AR~~I~~ 102 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGY-FGDVDRARMLMRR 102 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEE-HHHHHHHHHHHHH
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcC-HHHHHHHHHHHHh
Confidence 46899999999999999999999 99999999999999999876 1467999997 8999999999985
No 31
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.03 E-value=2.5e-10 Score=104.83 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=85.2
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHHHhhhCC--
Q 010252 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAEAVESP-- 226 (514)
Q Consensus 154 ~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~-----~~~I~I~G~s~~~v~~A~~~I~~iv~~~~~~~-- 226 (514)
.+..+.||..++|.||||+|+++|+|+++|||+|+|+..+. ...|+|+|. .++|.+|+..|..++.+.....
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~ii~e~~~~~~~ 80 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGD-PYKVQQACEMVMDILRERDQGGFG 80 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEEC-HHHHHHHHHHHHHHTTCSSSCCCS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHhccCCCCC
Confidence 46789999999999999999999999999999999976432 246899994 7999999999999987633110
Q ss_pred -------CCcceEEEEeccccchhhhccHHHHHHHHhcc
Q 010252 227 -------SLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (514)
Q Consensus 227 -------k~~~tHFIsIPl~~hp~I~~~~~~f~~sIl~~ 258 (514)
+...+..+.||...+..|+|+.+..++.|.++
T Consensus 81 ~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~ 119 (164)
T 2jvz_A 81 DRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQND 119 (164)
T ss_dssp SCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHH
T ss_pred CccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHH
Confidence 00124567799988999999999999999876
No 32
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.02 E-value=2.4e-10 Score=99.17 Aligned_cols=66 Identities=17% Similarity=0.294 Sum_probs=59.8
Q ss_pred EEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHHHHH
Q 010252 155 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (514)
Q Consensus 155 ~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~------~~~I~I~G~s~~~v~~A~~~I~~iv~~ 221 (514)
+..+.||.++++.||||+|+++|+|+++|||+|+|+.... ...|+|+| +.++|++|+..|+.++.+
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G-~~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRG-SPQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEES-CHHHHHHHHHHHHHHSCS
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEEC-CHHHHHHHHHHHHHHHhc
Confidence 7799999999999999999999999999999999987642 25799999 689999999999988865
No 33
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.02 E-value=2.9e-10 Score=102.19 Aligned_cols=71 Identities=28% Similarity=0.417 Sum_probs=62.5
Q ss_pred CCCeEEEEecccc------ccccccCCCchhHHHHHHHhCcEEEcCCCC-------------------CCCcEEEEccCh
Q 010252 151 AERHSLSVEVGAS------VIRFIKGKEGSTQKKFEKEMGVKIILPSSK-------------------KEDSIIIEGNST 205 (514)
Q Consensus 151 ~~~~~~~v~Vp~~------~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~-------------------~~~~I~I~G~s~ 205 (514)
..+++..|.||.+ |+|.|||++|.|+|+||+||||+|.|...+ +...|.|+|.+.
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~ 83 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM 83 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH
Confidence 4578899999988 888999999999999999999999996643 145799999999
Q ss_pred hHHHHHHHHHHHHHHH
Q 010252 206 DSVAKASEKIQAIIAE 221 (514)
Q Consensus 206 ~~v~~A~~~I~~iv~~ 221 (514)
+.+++|++.|+.|+..
T Consensus 84 e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 84 ENVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999865
No 34
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=2.4e-09 Score=94.62 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=59.4
Q ss_pred eEEEEecccc-------ccccccCCCchhHHHHHHHhCcEEEcCCCC-------------CCCcEEEEccChhHHHHHHH
Q 010252 154 HSLSVEVGAS-------VIRFIKGKEGSTQKKFEKEMGVKIILPSSK-------------KEDSIIIEGNSTDSVAKASE 213 (514)
Q Consensus 154 ~~~~v~Vp~~-------~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~-------------~~~~I~I~G~s~~~v~~A~~ 213 (514)
.+..|.||.+ ++|.|||++|.|+|+|++||||+|+|-..+ +...|.|++.+.+.+++|++
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~ 91 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKK 91 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHH
Confidence 4556777754 899999999999999999999999996432 23689999999999999999
Q ss_pred HHHHHHHHhh
Q 010252 214 KIQAIIAEAV 223 (514)
Q Consensus 214 ~I~~iv~~~~ 223 (514)
.|+.|+.+..
T Consensus 92 ~Ie~Ll~~v~ 101 (119)
T 2yqr_A 92 LCENLLQTVH 101 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhchH
Confidence 9999987744
No 35
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.89 E-value=2.7e-09 Score=98.11 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=63.6
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CC--cEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010252 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---ED--SIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (514)
Q Consensus 152 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~---~~--~I~I~G~s~~~v~~A~~~I~~iv~~~~~ 224 (514)
......+.||..++|.||||+|+++++|+++|||+|+||..+. .+ .|.|+| +.++|.+|+..|..+++++.+
T Consensus 83 ~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~~~~~ 159 (163)
T 3krm_A 83 VKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIG-HFYASQMAQRKIRDILAQVKQ 159 (163)
T ss_dssp CCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEE-CHHHHHHHHHHHHHHHHHHTC
T ss_pred CceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHHHHHH
Confidence 3567789999999999999999999999999999999987643 22 589999 589999999999999999765
No 36
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.82 E-value=1.9e-09 Score=90.89 Aligned_cols=67 Identities=25% Similarity=0.287 Sum_probs=60.0
Q ss_pred CCCCeEEEEeccccccccccCCCchhHHHHHHHhCcE-EEcCCCCCCCcEEEEccChhHHHHHHHHHHHH
Q 010252 150 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVK-IILPSSKKEDSIIIEGNSTDSVAKASEKIQAI 218 (514)
Q Consensus 150 ~~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~k-I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~i 218 (514)
....+...+.||++.+|.+||++|.++|+|.++||++ |+|.. +++.|.|.|.+.+.+.+|++.|+.+
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e--ddG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE--DTGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET--TTTEEEEEESSHHHHHHHHHHHSCC
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc--CCCEEEEEECCHHHHHHHHHHHHhh
Confidence 4567889999999999999999999999999999998 99953 3588999999999999999999643
No 37
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.81 E-value=2.8e-09 Score=97.77 Aligned_cols=68 Identities=22% Similarity=0.360 Sum_probs=61.2
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHh
Q 010252 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEA 222 (514)
Q Consensus 154 ~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~iv~~~ 222 (514)
.+..+.||..++|+||||+|.++++|+++|||+|+|+.... .+.|+|+|. .++|..|+..|+.+++++
T Consensus 91 ~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~ 161 (164)
T 2jvz_A 91 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARIINDLLQSL 161 (164)
T ss_dssp SSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESC-HHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcC-HHHHHHHHHHHHHHHhhh
Confidence 45788999999999999999999999999999999987644 357999997 899999999999999874
No 38
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.76 E-value=7.4e-09 Score=94.89 Aligned_cols=69 Identities=23% Similarity=0.336 Sum_probs=61.1
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCC---C-CCcEEEEccChhHHHHHHHHHHHHHHH
Q 010252 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSK---K-EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (514)
Q Consensus 152 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~---~-~~~I~I~G~s~~~v~~A~~~I~~iv~~ 221 (514)
......+.||..++|.||||+|.++++|+++|||+|+|++.. . .+.|+|+| +.++|.+|+..|..++.|
T Consensus 87 ~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 87 PPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG-IPQSIIECVKQICVVMLE 159 (160)
T ss_dssp CSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEE-CHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999999999999998632 2 46799999 589999999999988765
No 39
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.69 E-value=1.2e-08 Score=95.11 Aligned_cols=68 Identities=25% Similarity=0.322 Sum_probs=60.6
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHHH
Q 010252 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (514)
Q Consensus 153 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~-----~~~I~I~G~s~~~v~~A~~~I~~iv~~ 221 (514)
.....+.||.+++|.||||+|.++|+|+++|||+|+|+.... .+.|+|+|. .++|.+|+..|..++.+
T Consensus 103 ~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 103 ANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGE-PEQNRKAVELIIQKIQE 175 (178)
T ss_dssp GGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESS-HHHHHHHHHHHHHHHHS
T ss_pred ceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHh
Confidence 468899999999999999999999999999999999987532 357999997 69999999999988875
No 40
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.66 E-value=1.8e-08 Score=104.89 Aligned_cols=69 Identities=20% Similarity=0.232 Sum_probs=57.4
Q ss_pred ccCCCCeEEEEeccccccccccCCCc--hhHHHHHHHhCcEEEcCCCCC-------CCcEEEEccChhHHHHHHHHHHH
Q 010252 148 VPSAERHSLSVEVGASVIRFIKGKEG--STQKKFEKEMGVKIILPSSKK-------EDSIIIEGNSTDSVAKASEKIQA 217 (514)
Q Consensus 148 ~~~~~~~~~~v~Vp~~~~~~IIGk~G--~t~k~iE~eT~~kI~iP~~~~-------~~~I~I~G~s~~~v~~A~~~I~~ 217 (514)
..+...++..+.||+.+|++|||++| .++++|+++|||+|+||..++ ...|+|+|. +++|..|++.|+.
T Consensus 180 ~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs-~e~V~~Ark~I~~ 257 (376)
T 3n89_A 180 PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGN-IDNVLKARRYIMD 257 (376)
T ss_dssp CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESC-HHHHHHHHHHHHH
T ss_pred cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeC-HHHHHHHHHHHHh
Confidence 34556799999999999999999999 566999999999999998654 246999995 8999999999973
No 41
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.66 E-value=1.5e-08 Score=94.34 Aligned_cols=65 Identities=22% Similarity=0.290 Sum_probs=57.1
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHH
Q 010252 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAI 218 (514)
Q Consensus 153 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~------~~~I~I~G~s~~~v~~A~~~I~~i 218 (514)
.....+.||..++|.||||+|.++|+|+++|||+|+|+.... ...|+|+| +.++|.+|+..|+.+
T Consensus 103 ~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~ 173 (174)
T 1j4w_A 103 LQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRG-TPQQIDYARQLIEEK 173 (174)
T ss_dssp -CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEEC-CHHHHHHHHHHHHHH
T ss_pred cEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEEC-CHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999987532 35799999 589999999999875
No 42
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.56 E-value=5.3e-08 Score=88.27 Aligned_cols=65 Identities=22% Similarity=0.366 Sum_probs=51.0
Q ss_pred EEEEeccc------cccccccCCCchhHHHHHHHhCcEEEcCCCCC---------------------CCcEEEEccChh-
Q 010252 155 SLSVEVGA------SVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---------------------EDSIIIEGNSTD- 206 (514)
Q Consensus 155 ~~~v~Vp~------~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~---------------------~~~I~I~G~s~~- 206 (514)
+..|.||. .|+|.|||++|+|+|+||++|||+|.|-..|+ .-.|.|+|.+.+
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~ 82 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQN 82 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCH
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchh
Confidence 34566664 56999999999999999999999999987663 117889997654
Q ss_pred ----HHHHHHHHHHHHH
Q 010252 207 ----SVAKASEKIQAII 219 (514)
Q Consensus 207 ----~v~~A~~~I~~iv 219 (514)
.+++|++.|+.++
T Consensus 83 ~~~~~l~~A~~~I~~lL 99 (140)
T 2bl5_A 83 RAELKLKRAVEEVKKLL 99 (140)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHC
Confidence 6777877777554
No 43
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.51 E-value=7.4e-08 Score=87.61 Aligned_cols=65 Identities=17% Similarity=0.325 Sum_probs=57.4
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCc-EEEcCCCCCC------C--cEEEEccChhHHHHHHHHHHHHHHH
Q 010252 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGV-KIILPSSKKE------D--SIIIEGNSTDSVAKASEKIQAIIAE 221 (514)
Q Consensus 156 ~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~-kI~iP~~~~~------~--~I~I~G~s~~~v~~A~~~I~~iv~~ 221 (514)
..+.||...++++|||+|.|+|.|.+.||+ +|+|++.++. + .|+|+|. +++|+.|+..|+.++.+
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~-~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGT-KDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEE-HHHHHHHHHHHHHHHHT
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeC-HHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999996 9999875432 2 3789996 79999999999988865
No 44
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.39 E-value=3.3e-07 Score=88.99 Aligned_cols=63 Identities=29% Similarity=0.327 Sum_probs=58.0
Q ss_pred EEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccC----hhHHHHHHHHHHHHH
Q 010252 155 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNS----TDSVAKASEKIQAII 219 (514)
Q Consensus 155 ~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~~~~I~I~G~s----~~~v~~A~~~I~~iv 219 (514)
...+.||+..++.|||++|.+++.|+++||++|+|+. +++.|.|.|.+ ++.+++|++.|.+|+
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~--~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS--ETGEVWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT--TTCEEEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc--CCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 5589999999999999999999999999999999985 35789999865 799999999999998
No 45
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.18 E-value=7.9e-07 Score=98.40 Aligned_cols=64 Identities=23% Similarity=0.233 Sum_probs=57.8
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHH
Q 010252 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAII 219 (514)
Q Consensus 153 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~iv 219 (514)
--...++||++.+|.|||+||.++|+|+++|||+|+|. +++.|.|.|.+++.+++|++.|+.|+
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~---d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV---DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC---SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc---CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 44788999999999999999999999999999999997 36899999999999999999998775
No 46
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.10 E-value=1.8e-06 Score=78.45 Aligned_cols=94 Identities=18% Similarity=0.217 Sum_probs=73.8
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHHhhhCCCCcce
Q 010252 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVESPSLDYS 231 (514)
Q Consensus 152 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~iv~~~~~~~k~~~t 231 (514)
.+++..+.||...+|.+||++|+++++|++|+|+.|...+ .+...+++.|.+++.|.+|+..+. - .+
T Consensus 2 ~~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~-~~~~~~i~~~~~p~~v~~~~~~l~-------~-----~e 68 (144)
T 2qnd_A 2 SRFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLD-EDTCTFHIYGEDQDAVKKARSFLE-------F-----AE 68 (144)
T ss_dssp --CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHC-------E-----EE
T ss_pred CceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccC-CCchheeeccCCHHHHHHHHHhhh-------c-----ce
Confidence 4678899999999999999999999999999995444333 234567888878889988865321 1 13
Q ss_pred EEEEeccccchhhhccHHHHHHHHhcc
Q 010252 232 HFVSLPLAVHPELVDKLVNFQNTILGI 258 (514)
Q Consensus 232 HFIsIPl~~hp~I~~~~~~f~~sIl~~ 258 (514)
..|.+|-..+..++|+.+..++.+.+.
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~ 95 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDK 95 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHH
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHH
Confidence 667799988999999999999988765
No 47
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.87 E-value=1.5e-05 Score=77.26 Aligned_cols=53 Identities=23% Similarity=0.316 Sum_probs=48.3
Q ss_pred ccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 010252 164 VIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 221 (514)
Q Consensus 164 ~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~iv~~ 221 (514)
..|.||||+|+|++.||+.|||+|.|+. ..|.|.|. .++++.|++.|..++..
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~----~~v~i~G~-~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYG----KTVAIIGN-PIQIEIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEET----TEEEEEEC-HHHHHHHHHHHHHHHTT
T ss_pred hhheeECCCchHHHHHHHHhCceEEECC----eEEEEEeC-HHHHHHHHHHHHHHHcC
Confidence 5788999999999999999999999974 57999996 79999999999999855
No 48
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.74 E-value=4.1e-05 Score=72.81 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=56.5
Q ss_pred EEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEc----cChhHHHHHHHHHHHHHH
Q 010252 155 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEG----NSTDSVAKASEKIQAIIA 220 (514)
Q Consensus 155 ~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~~~~I~I~G----~s~~~v~~A~~~I~~iv~ 220 (514)
...+.||+...+.|||++|++++.|++++|++|+|.. .++.|.|+. .++..+.+|++-|.+|..
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~--~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~r 72 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT--ENSMVIVEPEAEGIPPVNLMKAAEVVKAISL 72 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET--TTTEEEEEESSTTSCHHHHHHHHHHHHHHHH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc--CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 3689999999999999999999999999999999965 456788871 357999999999999985
No 49
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.53 E-value=5.4e-05 Score=71.97 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=48.7
Q ss_pred cccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 010252 163 SVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 221 (514)
Q Consensus 163 ~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~iv~~ 221 (514)
...|.||||+|.|++.||+-|||+|.|.. ..|.|.|. .++++.|++.|..++..
T Consensus 107 r~~GrIIGk~G~tik~iE~~Tg~~I~v~~----~~v~i~G~-~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 107 RIKGRIIGEGGRARRTIEEMTDTYINVGE----YEVAIIGD-YERAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTCEEEECS----SEEEEEEE-HHHHHHHHHHHHHHHTT
T ss_pred HHhhheeCCCccHHHHHHHHHCceEEEcC----CEEEEEeC-hHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999975 48999996 79999999999998853
No 50
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.47 E-value=2.1e-05 Score=88.12 Aligned_cols=65 Identities=15% Similarity=0.281 Sum_probs=14.0
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 010252 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 221 (514)
Q Consensus 154 ~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~iv~~ 221 (514)
-...+.||++.++-+||+||.++|+|.++||++|+|- +.+.|.|.+.+++.+++|+++|+.|+.+
T Consensus 570 ~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~---ddG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 570 KIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN---DDGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp C----------------------------------------------CCSCHHHHHHHHHC-------
T ss_pred eEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE---CCceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 3678999999999999999999999999999999996 3588999999999999999999998865
No 51
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=96.81 E-value=0.0024 Score=57.19 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=58.2
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC--CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010252 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK--EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (514)
Q Consensus 156 ~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~--~~~I~I~G~s~~~v~~A~~~I~~iv~~~~~ 224 (514)
..+.|...+.+.|+|++|+.++.||..++|.|++.+-+. ...|+|-|+ ...-.+|+..|+.+.+--++
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~g~tEVtIfG~-~~~Q~rak~MI~sLA~~hr~ 127 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGP-PPFRRDVDRMLTDLAHYCRM 127 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTTSCEEEEEESC-HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCCCCcEEEEEECC-HHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999977655 357999996 67778888888888876444
No 52
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=96.55 E-value=0.0033 Score=61.82 Aligned_cols=168 Identities=11% Similarity=0.034 Sum_probs=97.3
Q ss_pred CceEEEEecCCcchhhHhhhhccccccccccccCCCCCCCCCCCCcccccCCCCceEEeeccccCC-------------H
Q 010252 288 EHKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWN-------------K 354 (514)
Q Consensus 288 n~FVAv~i~~~~~~~~vk~~q~~i~~~~~~~~~~r~~~~~~~Gi~~s~fv~p~~LHLTL~fLgl~~-------------e 354 (514)
|.+|+=--...+....|.++|+.|. . ...-+.=.|+||+.+|+||.=+-... +
T Consensus 43 nTvI~~l~~~s~~~~~l~~iq~~L~---------~-----~~~~~~~~~lPpsS~HMTvfdgv~e~~r~~~~wP~~L~~d 108 (243)
T 2fsq_A 43 NTVVCHLVEGSQTESAIVSTRQRFL---------D-----MPEASQLAFTPVSSLHMTVFQGVIESRRALPYWPQTLPLD 108 (243)
T ss_dssp EEEEEEBCTTSHHHHHHHHHHHHHH---------T-----SGGGGGEEECCGGGCEEEEEEEEETTCCSTTSSCTTSCTT
T ss_pred CeEEEecCCCChHHHHHHHHHHHHH---------h-----ccccCceeeCCchhhhhhhccccccccccCCCCCccCccc
Confidence 4455543334455688999999874 1 11123336999999999997643311 4
Q ss_pred HHHHHHHHHHHHhHHhhhhhcCCCCeEEEecccccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCccccC
Q 010252 355 DRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRD 434 (514)
Q Consensus 355 eev~~A~~~L~~i~~~i~e~l~~~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~La~~L~~~f~~~Gl~~e~~ 434 (514)
..++.+.+.+.+- +...-...||.+.+.|+. +. -|..++..+ .....|.++-+.|.+ ..|+...+
T Consensus 109 ~~l~~~~~~~~~~---l~~~~~~~p~~~~v~~l~--~~-----~v~L~Pade-~~~~~L~~~R~~l~q---~lGi~~p~- 173 (243)
T 2fsq_A 109 TPIDAVTDYYRDR---LSTFPTLPAFNMRVTGLR--PV-----GMVMKGATA-EDDSIVALWRDTFAD---FFGYRHPD- 173 (243)
T ss_dssp CCHHHHHHHHHHH---GGGCCCCCCCCEEEEEEE--TT-----EEEEEESSH-HHHHHHHHHHHHHHH---HHTCCCTT-
T ss_pred chHHHHHHHHHHH---HhcccCCCCeEEEEeccc--cc-----eEEEecCCH-HHHHHHHHHHHHHHH---HhCCCCCC-
Confidence 4566655555432 222222378999999993 22 466666654 234566666555555 46886642
Q ss_pred CCCCceeeEEeeeecccccccCCCccccccHHHHHHHhCC---CccccEEecEEEEeee
Q 010252 435 YNKKLKLHATLMNIRHKKRRKGTRRVDYFDARDIFKQFGS---KEWGEYLIKEAHLSQR 490 (514)
Q Consensus 435 ~~r~fkPHiTLar~k~~~~~~~~~~~~~fda~~il~~~~~---~~fG~~~V~eI~Ls~l 490 (514)
...|+.||||+-.-.+... ...-....+++++.. -.++.+.+....+|.-
T Consensus 174 -hd~y~fHITLgY~~~~l~~-----ee~~~~~~~l~~~~~~l~~~~p~i~l~~~efc~F 226 (243)
T 2fsq_A 174 -HDTYEFHITLSYIVSWFEP-----ECLPRWQAMLDEELEKLRVAAPVIQMRPPAFCEF 226 (243)
T ss_dssp -GGGCCEEEECEEESSCBCG-----GGHHHHHHHHHHHHHHHHHHCSSCCBCCCEEEEE
T ss_pred -CcceEEEEEEEeccCCCCH-----HHHHHHHHHHHHHHHHHHhhCCeeeecCcceEEe
Confidence 5689999999986433211 000112233333322 1234557888888864
No 53
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.24 E-value=0.0032 Score=70.77 Aligned_cols=65 Identities=22% Similarity=0.387 Sum_probs=0.0
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 010252 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 221 (514)
Q Consensus 154 ~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~iv~~ 221 (514)
-...+.||++.++-+||+||.+++.|.++||+.|+|-. .+.|.|.+.+.+.+.+|+++|+.+..+
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~---dg~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED---DGTVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp --------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecC---CccEEEecCCHHHHHHHHHHHHHHhhh
Confidence 35678899999999999999999999999999999864 578999998888899998888877543
No 54
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=94.86 E-value=0.0015 Score=73.84 Aligned_cols=62 Identities=16% Similarity=0.298 Sum_probs=23.8
Q ss_pred EEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHH
Q 010252 155 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAII 219 (514)
Q Consensus 155 ~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~iv 219 (514)
...+.||++.+|-+||++|.++|.|.++||+.|+|-. .+.|.|.+.+.+..++|+++|+.+.
T Consensus 599 ~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~---dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 599 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED---DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CCCC------------------CTTCCCCCSCC-----------CCCBSSHHHHCC---------
T ss_pred eEEEEEChHHeehcccccceeeehhhHhhCCEEEecC---CceEEEecCCHHHHHHHHHHHHHhc
Confidence 4568899999999999999999999999999999973 5789999988888888887776654
No 55
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=80.64 E-value=3.3 Score=39.99 Aligned_cols=63 Identities=25% Similarity=0.271 Sum_probs=53.9
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 010252 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 221 (514)
Q Consensus 156 ~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~iv~~ 221 (514)
.-+.|+....+.++|++|..+..|.+.+++.|.+ |.++-|.|.+.+...+..+..-|+.+-.+
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~v---G~NG~IWi~~~~~~~~~~~~~ai~~~e~~ 212 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFV---ARNGRIHLECPNEDLEAIAVMAIKIIDEE 212 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEE---ETTTEEEEECSCHHHHHHHHHHHHHHHHC
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEE---eCCCEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 5678999999999999999999999999999998 34799999998777787777777766543
No 56
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=75.03 E-value=3.5 Score=39.71 Aligned_cols=61 Identities=26% Similarity=0.376 Sum_probs=49.8
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHH
Q 010252 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIA 220 (514)
Q Consensus 156 ~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~iv~ 220 (514)
.-+.++..+.+.++|++|..+..|.+.+++.|.+ |.++-|.|.+.+ .....+...|+.+-.
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~v---G~NG~IWi~~~~-~~~~~~~~ai~~~e~ 198 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVV---GQNGLIWVNGDR-RKVSIAEEAIYLIEQ 198 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEE---CTTSEEEEESCH-HHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEE---ECCcEEEEeCCc-hhHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999998 468999999863 456666666655543
No 57
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=71.27 E-value=3.6 Score=38.12 Aligned_cols=58 Identities=9% Similarity=0.073 Sum_probs=48.3
Q ss_pred EEeccccccccccCCCch-hHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHH
Q 010252 157 SVEVGASVIRFIKGKEGS-TQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQA 217 (514)
Q Consensus 157 ~v~Vp~~~~~~IIGk~G~-t~k~iE~eT~~kI~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~ 217 (514)
-+.||..+.+.++|++|. .++.|.+++++.|.+= -++-|.|.+.+...+..+..-|+.
T Consensus 94 l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG---~NG~IWi~~~~~~~~~~v~~aI~~ 152 (175)
T 2ja9_A 94 IIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIG---LNGKIWVKCEELSNTLACYRTIME 152 (175)
T ss_dssp EEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEE---TTTEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEE---CCcEEEEecCCHHHHHHHHHHHHH
Confidence 688999999999998888 9999999999999983 478999999876655555555554
No 58
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=68.70 E-value=2.9 Score=37.70 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=32.8
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcC
Q 010252 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILP 190 (514)
Q Consensus 154 ~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP 190 (514)
-...+-|+....|..||++|+.++.|++++|-+|+|=
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV 72 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVV 72 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEE
Confidence 3556778888899999999999999999999999873
No 59
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=64.38 E-value=1.5 Score=39.62 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=34.6
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcC
Q 010252 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILP 190 (514)
Q Consensus 153 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP 190 (514)
.....+.||....+..|||+|.+.+-..+=||.+|+|-
T Consensus 102 ~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 102 VKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred cEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 46778999999999999999999999999999988774
No 60
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=62.35 E-value=0.091 Score=44.64 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=41.5
Q ss_pred EEccChhHHHHHHHHHHHHHHHhhhCCCCcceEEEEeccccchhhhccHHHHHHHHhcc
Q 010252 200 IEGNSTDSVAKASEKIQAIIAEAVESPSLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (514)
Q Consensus 200 I~G~s~~~v~~A~~~I~~iv~~~~~~~k~~~tHFIsIPl~~hp~I~~~~~~f~~sIl~~ 258 (514)
|+|+ +++|.+|+..|..++.+ ..|.-|.||..+|.+|+|+.+..++.|.++
T Consensus 5 i~G~-~~~V~~A~~~i~~~~~~-------~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~ 55 (102)
T 2ctf_A 5 SSGE-PEKLGQALTEVYAKANS-------FTVSSVAAPSWLHRFIIGKKGQNLAKITQQ 55 (102)
T ss_dssp CCCC-CCCCCCSCCCCCCCCCC-------CEEEEEECCSTTHHHHHTTTTCHHHHHHHH
T ss_pred cCcC-HHHHHHHHHHHHHHhcC-------eEEEEEEeCHHHHhhhcCCCCccHHHHHHH
Confidence 5675 68888888888755432 257888899999999999999999999875
No 61
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=56.94 E-value=3.9 Score=40.94 Aligned_cols=59 Identities=14% Similarity=0.194 Sum_probs=48.6
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHH
Q 010252 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQA 217 (514)
Q Consensus 156 ~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~ 217 (514)
.-++||..+.+.++|+++..++.|.+.+++.|.+ |-++-|.|.+.+......+..-|+.
T Consensus 212 ~l~~Vs~~lvrrl~~~~~~~l~~L~~~~~~eI~v---G~NG~IWI~~~~~~~~~~i~~aI~~ 270 (289)
T 2nn6_G 212 LLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVF---GMNGRIWVKAKTIQQTLILANILEA 270 (289)
T ss_dssp EEECCCHHHHHHHHCTTCSHHHHTTCSSSCCCEE---ETTTEEEECCSSHHHHHHHHHHHHH
T ss_pred EEEEEChHHhhhhhcCchhHHHHhcccCCeEEEE---ECCcEEEEecCChhHHHHHHHHHHH
Confidence 3689999999999999999999999999999987 3478999999876666555555543
No 62
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=54.82 E-value=1.9 Score=42.23 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=41.7
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHH
Q 010252 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAI 218 (514)
Q Consensus 156 ~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~i 218 (514)
.-+.++....+.++|++|..+..|.+.+++.|.+ |.++-|.|.+.+...+..+..-|+.+
T Consensus 157 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~v---G~NG~IWi~~~~~~~~~~~~~aI~~~ 216 (251)
T 2je6_I 157 IVIDIMPVKVPRVIGKNKSMYETLTSKSGCSIFV---ANNGRIWATCPSRFSEEILIEAIRKI 216 (251)
T ss_dssp CEEECCGGGHHHHHCGGGHHHHHHHTTC---CEE---CTTSEEEC-----CTTCCTHHHHTTT
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEE---ECCcEEEEeCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999988 45889999986555555555555433
No 63
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=50.31 E-value=9.6 Score=37.33 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=36.0
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCC
Q 010252 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSS 192 (514)
Q Consensus 154 ~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~ 192 (514)
....+.||....+.-|||+|.+.|.--+=||.+|+|-+.
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 568899999999999999999999999999999999653
No 64
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=47.01 E-value=9.3 Score=34.61 Aligned_cols=102 Identities=13% Similarity=0.022 Sum_probs=58.8
Q ss_pred EEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEE--EEccChhHHHHHHHHHHHHHHHhhhCCCCcceE
Q 010252 155 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSII--IEGNSTDSVAKASEKIQAIIAEAVESPSLDYSH 232 (514)
Q Consensus 155 ~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~~~~~~I~--I~G~s~~~v~~A~~~I~~iv~~~~~~~k~~~tH 232 (514)
.+.+.|--+-.|.||||.|.|++.|+-=++--++=-. .-.|. |.|- ++.-+...+++..=+++..+.-+.+.+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn~~~---~~~V~LDve~Y-RerReetL~~lA~~~A~kV~~tgk~v~- 108 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHPTY---GYSIRLEISTF-LQNQEKVMDTQLQSVIMTVHEVGKGQM- 108 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHHHHH---SCEEEEEETTH-HHHHHHHHHHHHHHHHHHHHHTSCEEE-
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHHhhhcC---CceEEEEhHHh-HHHHHHHHHHHHHHHHHHHHHHCCcCC-
Confidence 5677788899999999999999999876643222110 11222 3443 445555554444333333322133332
Q ss_pred EEEeccccchhhhccHHHHHHHHhcccccccccccCCCCCccccchHHhhhcccCCceEEEEec
Q 010252 233 FVSLPLAVHPELVDKLVNFQNTILGITDVCLDENVGSKSNEDASDSEEKEQQVDQEHKVAVELN 296 (514)
Q Consensus 233 FIsIPl~~hp~I~~~~~~f~~sIl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rpn~FVAv~i~ 296 (514)
-|+. . ..++..|++. ...-|+-+|.|+-.
T Consensus 109 ---~p~e--r-------riIH~aLq~~-----------------------~~~eP~R~VvI~~~ 137 (152)
T 2pt7_G 109 ---KAPD--G-------VLTYIALKKL-----------------------RKAFPNKYVSIKTN 137 (152)
T ss_dssp ---ECCS--T-------THHHHHHHHH-----------------------HHHCTTSCEEEEEC
T ss_pred ---CCCc--h-------HHHHHHHHhC-----------------------cccCCCcEEEEEec
Confidence 4432 1 6777788752 11368999999755
No 65
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=44.24 E-value=13 Score=38.42 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=36.5
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCC
Q 010252 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSS 192 (514)
Q Consensus 153 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~~ 192 (514)
.....+.||....+..|||+|.+.+-.-+=||.+|+|-+.
T Consensus 306 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 306 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred CcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 4568899999999999999999999999999999999553
No 66
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=44.04 E-value=12 Score=38.18 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=36.0
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCC
Q 010252 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPS 191 (514)
Q Consensus 153 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~iP~ 191 (514)
.....+.||....+.-|||+|.+.|.--.=||.+|+|-+
T Consensus 302 ~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 302 NKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp TTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred CCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 567899999999999999999999999999999999854
No 67
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=42.17 E-value=39 Score=30.07 Aligned_cols=83 Identities=6% Similarity=0.000 Sum_probs=52.9
Q ss_pred ccccCCHHHHHHHHHHHHHhHHhhhhhcCCCCeEEEecccccC----------CCCCCCceEEEEeee-ccCChhHHHHH
Q 010252 348 MLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLM----------RGSKDKARILYAPVE-EIGDGDRLLHA 416 (514)
Q Consensus 348 fLgl~~eeev~~A~~~L~~i~~~i~e~l~~~pf~L~l~GLg~F----------~~dp~~pRVLyagV~-~~~~~~~L~~L 416 (514)
-|.++++++.......+..+...+.+.++...+.+-.-|-..| .+|+.-|..+|.... ..-+.+.|.++
T Consensus 46 ~l~dL~~e~~~~l~~~~~~va~al~~~~~~~~~Ni~~aGq~V~HlH~HvIPR~~~D~~~~~~vw~~~~~~~~~~eel~~~ 125 (149)
T 3i24_A 46 EIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIGALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGVIRAQSSQTQL 125 (149)
T ss_dssp SGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEECCSSCCSCCEEEEEECTTSTTTTSCSTTCSCCCBCCHHHHHHH
T ss_pred ChhHCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEhhhhCCCCEEEEEEeCCccCCCCCCcceecCCCCCCCCHHHHHHH
Confidence 4556678888777788887777777666555566655554444 234444545554211 11235789999
Q ss_pred HHHHHHHHHHCCCc
Q 010252 417 CQVIIDAFNEAGLV 430 (514)
Q Consensus 417 a~~L~~~f~~~Gl~ 430 (514)
++.|+.+|...|.-
T Consensus 126 a~kIr~~L~~~~~~ 139 (149)
T 3i24_A 126 VDLLRDKLSNISGF 139 (149)
T ss_dssp HHHHHHHHTTSTTC
T ss_pred HHHHHHHHHhccch
Confidence 99999999876543
No 68
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=36.48 E-value=41 Score=30.58 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=26.1
Q ss_pred CCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCccccCCCCCceeeEEe
Q 010252 394 KDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATL 445 (514)
Q Consensus 394 p~~pRVLyagV~~~~~~~~L~~La~~L~~~f~~~Gl~~e~~~~r~fkPHiTL 445 (514)
+...+-+|+-+ +.+-...|.++.+.+...+ |. .++.|||||
T Consensus 5 ~~~~~~f~~~p-p~~~~~~l~~~~~~l~~~~---~~-------~~~~~HiTL 45 (189)
T 1jh6_A 5 KKDVYSVWALP-DEESEPRFKKLMEALRSEF---TG-------PRFVPHVTV 45 (189)
T ss_dssp CCEEEEEEEEE-CTTTHHHHHHHHHHHHHHH---TC-------CCCCCCEEE
T ss_pred CCCcEEEEEEC-CHHHHHHHHHHHHHHHHHc---CC-------CCCCCEEEE
Confidence 44557788876 4334456777776665532 22 247999999
No 69
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=33.82 E-value=1.1e+02 Score=26.58 Aligned_cols=63 Identities=11% Similarity=0.233 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhHHhhhhhcCCCCeEEEecccccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCcc
Q 010252 354 KDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVF 431 (514)
Q Consensus 354 eeev~~A~~~L~~i~~~i~e~l~~~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~La~~L~~~f~~~Gl~~ 431 (514)
.+-+..+.++|.+-+ ...-..|.++|+..+-+ |.-+-...+...++.+++.|.+.+.+.|+.+
T Consensus 4 ~~l~~~i~~al~dkK-------a~DI~vlDv~~~s~~~D--------yfVIatg~S~rqv~Aiad~v~~~lk~~g~~~ 66 (125)
T 2o5a_A 4 QELLQLAVNAVDDKK-------AEQVVALNMKGISLIAD--------FFLICHGNSEKQVQAIAHELKKVAQEQGIEI 66 (125)
T ss_dssp HHHHHHHHHHHHHTT-------CEEEEEEECBTTBC--C--------EEEEEEESSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHcC-------CCCeEEEEcCCCCcccC--------EEEEEEcCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 345556666666543 12446788899998877 4434333346789999999999999998764
No 70
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=33.00 E-value=1.8e+02 Score=28.22 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhHHhhhh---hcCCCCeEEEecccccCCCCCCCceE-EEEeeeccCChhHHHHHHHHHHHHHHHCCCcc
Q 010252 356 RVNAATNVLKSISSKVMD---ALDNRPLFIRLKGLDLMRGSKDKARI-LYAPVEEIGDGDRLLHACQVIIDAFNEAGLVF 431 (514)
Q Consensus 356 ev~~A~~~L~~i~~~i~e---~l~~~pf~L~l~GLg~F~~dp~~pRV-LyagV~~~~~~~~L~~La~~L~~~f~~~Gl~~ 431 (514)
+++++.+.|+++.+.+.+ .+..+|..+.+.+++-. ...+ +|+-+.+.+....-.++...|.++|.+.|+..
T Consensus 193 d~~~v~~~l~~i~~~~~~~~~~~~~~~~~v~~~~~~~s-----~i~~~v~~~~~~~~~~~~~~~l~~~I~~~f~~~gI~i 267 (285)
T 3udc_A 193 DVDKIIEGLQEICEEVKKSRDDLIEGPTVLGITDMQDS-----KLVIMVYAKTQPMQKWAVERDIRYRVKKMFDQKNISF 267 (285)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSSBSSCCEEEEEEEEETT-----EEEEEEEEEESTTCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHHhcccccccCcccccccccCCC-----EEEEEEEEEECcchHHHHHHHHHHHHHHHHHHCCCcC
Confidence 345555555554333322 22235556666665432 2222 34444432222334567888999999999976
No 71
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=32.29 E-value=27 Score=33.95 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=41.3
Q ss_pred EEEecC--CcchhhHhhhhccccccccccccCCCCCCCCCCCCcccccCCCCceEEeeccccC-CHHHHHHHHHHHHHhH
Q 010252 292 AVELNI--GDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLW-NKDRVNAATNVLKSIS 368 (514)
Q Consensus 292 Av~i~~--~~~~~~vk~~q~~i~~~~~~~~~~r~~~~~~~Gi~~s~fv~p~~LHLTL~fLgl~-~eeev~~A~~~L~~i~ 368 (514)
+|.|.- +..-++|..+++.|. +..||.. -....-.+||||++++.+ ++++......+|+++.
T Consensus 142 ~v~L~Pade~~~~~L~~~R~~l~--------------q~lGi~~-p~hd~y~fHITLgY~~~~l~~ee~~~~~~~l~~~~ 206 (243)
T 2fsq_A 142 GMVMKGATAEDDSIVALWRDTFA--------------DFFGYRH-PDHDTYEFHITLSYIVSWFEPECLPRWQAMLDEEL 206 (243)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHH--------------HHHTCCC-TTGGGCCEEEECEEESSCBCGGGHHHHHHHHHHHH
T ss_pred eEEEecCCHHHHHHHHHHHHHHH--------------HHhCCCC-CCCcceEEEEEEEeccCCCCHHHHHHHHHHHHHHH
Confidence 444433 333678888887763 1334422 235567899999999855 4566666667777776
Q ss_pred Hhhh
Q 010252 369 SKVM 372 (514)
Q Consensus 369 ~~i~ 372 (514)
+.+.
T Consensus 207 ~~l~ 210 (243)
T 2fsq_A 207 EKLR 210 (243)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 72
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=30.58 E-value=24 Score=30.33 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=23.6
Q ss_pred CCcEEEEcc----ChhHHHHHHHHHHHHHHHhhh
Q 010252 195 EDSIIIEGN----STDSVAKASEKIQAIIAEAVE 224 (514)
Q Consensus 195 ~~~I~I~G~----s~~~v~~A~~~I~~iv~~~~~ 224 (514)
++.|+|+.. ...+.+.|.+++..++.++..
T Consensus 75 ~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~a~~ 108 (112)
T 1j26_A 75 AGELVLTSESSRYQFRNLAECLQKIRDMIAEASG 108 (112)
T ss_dssp SSEEEEEECCCSSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCccCHHHHHHHHHHHHHHHHHHhhc
Confidence 356888772 357899999999999998655
No 73
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=30.10 E-value=1.4e+02 Score=26.05 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhHHhhhhhcCCCCeEEEecccccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCcc
Q 010252 355 DRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVF 431 (514)
Q Consensus 355 eev~~A~~~L~~i~~~i~e~l~~~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~La~~L~~~f~~~Gl~~ 431 (514)
+-+..+.++|.+-+ ...-..|.++|+..+-+ |.-+-...+...++.+++.|.+.+.+.|+.+
T Consensus 5 ~l~~~i~~al~dkK-------a~DI~vlDv~~~s~~~D--------yfVIaTg~S~rqv~Aiad~v~~~lk~~g~~~ 66 (130)
T 2id1_A 5 EISKLAIEALEDIK-------GKDIIELDTSKLTSLFQ--------RMIVATGDSNRQVKALANSVQVKLKEAGVDI 66 (130)
T ss_dssp HHHHHHHHHHHHTT-------CEEEEEEEGGGTCSSCS--------EEEEEECSSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHcC-------CCCeEEEEcCCCCcccC--------EEEEEEcCCHHHHHHHHHHHHHHHHHcCCcC
Confidence 34455555555532 12446788899998887 4444433356789999999999999999864
No 74
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=29.99 E-value=1.1e+02 Score=26.42 Aligned_cols=81 Identities=5% Similarity=-0.023 Sum_probs=50.4
Q ss_pred eccccCCHHHHHHHHHHHHHhHHhhhhhcCCCCeEEEecccccC----------CCCCCCceEEEEee-eccCChhHHHH
Q 010252 347 LMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLM----------RGSKDKARILYAPV-EEIGDGDRLLH 415 (514)
Q Consensus 347 ~fLgl~~eeev~~A~~~L~~i~~~i~e~l~~~pf~L~l~GLg~F----------~~dp~~pRVLyagV-~~~~~~~~L~~ 415 (514)
.-|.++++++.......+..+...+.+.++...+.+-.-|-..| .+|+.-|..+|... ...-+.+.|.+
T Consensus 45 ~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~~aGq~V~HlH~HviPR~~~D~~~p~~vw~~~~~~~~~~eel~~ 124 (137)
T 3ohe_A 45 REIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVAALGNMVPQLHLHHIVRYQGDPAWPGPVWGKQPPVPYTEEQQAS 124 (137)
T ss_dssp CSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSSCCSCCEEEEEECTTSTTTTSCCTTSSCCCCCCHHHHHH
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeeccCcCCEEEEEEeCCCCCCCCCCcccccCCCCCCCCHHHHHH
Confidence 34567788888878888888877777665544455554443333 34444454556421 11123578999
Q ss_pred HHHHHHHHHHHC
Q 010252 416 ACQVIIDAFNEA 427 (514)
Q Consensus 416 La~~L~~~f~~~ 427 (514)
+++.|+..|.+.
T Consensus 125 ~~~~ir~~L~~~ 136 (137)
T 3ohe_A 125 VKAKLQPLLEQL 136 (137)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999988753
No 75
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=29.93 E-value=20 Score=29.57 Aligned_cols=30 Identities=10% Similarity=0.179 Sum_probs=21.7
Q ss_pred EEEEeccccccccccCCCchhHHHHHHHhC
Q 010252 155 SLSVEVGASVIRFIKGKEGSTQKKFEKEMG 184 (514)
Q Consensus 155 ~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~ 184 (514)
.+.|.|-..+-|.+||++|..+++|.++..
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~l~ 65 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAVVQ 65 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHHHH
Confidence 345556667789999999997777655443
No 76
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=29.90 E-value=1.6e+02 Score=28.62 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=47.6
Q ss_pred ceEEeeccccCCHHHHHHHHHHHHHhHHhhhhhcCCCCeEEEecccccCCCCCCCceEEEEeeeccCChhHHHHHHHHHH
Q 010252 342 FHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVII 421 (514)
Q Consensus 342 LHLTL~fLgl~~eeev~~A~~~L~~i~~~i~e~l~~~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~La~~L~ 421 (514)
..+++.+=. +.+++++.+.|.++.......+..++..+.+.+++-..= .-+| ++-+...+-...-.++...+.
T Consensus 186 ~~~~v~v~y---~~d~~~v~~~l~~~~~~~~~vl~~p~p~v~v~~~~~~~i---~~~v-~~~~~~~~~~~~~~~l~~~i~ 258 (286)
T 2vv5_A 186 NEFIIGVAY---DSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSI---NFVV-RVWSNSGDLQNVYWDVLERIK 258 (286)
T ss_dssp EEEEEEECT---TSCHHHHHHHHHHHHHHCTTBCTTSCEEEEEEEECSSSE---EEEE-EEEEETTTHHHHHHHHHHHHH
T ss_pred EEEEEEEcC---CCCHHHHHHHHHHHHHhCcccccCCCCEEEEEEecCCeE---EEEE-EEEEccchHHHHHHHHHHHHH
Confidence 344444433 345666777777764443344555677888888764211 1122 223332222333456788899
Q ss_pred HHHHHCCCcc
Q 010252 422 DAFNEAGLVF 431 (514)
Q Consensus 422 ~~f~~~Gl~~ 431 (514)
++|.+.|+..
T Consensus 259 ~~~~~~gI~i 268 (286)
T 2vv5_A 259 REFDAAGISF 268 (286)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHCCCcC
Confidence 9999999976
No 77
>3i0u_A Phosphothreonine lyase OSPF; APO-structure, type III effector, phospho lyase, secreted, virulence, structural genomics; 2.70A {Shigella flexneri}
Probab=24.49 E-value=2.6e+02 Score=26.32 Aligned_cols=79 Identities=11% Similarity=0.299 Sum_probs=50.9
Q ss_pred CCceEEeeccccCCHHHHHHHHHHHHHhHHhhhhhcCCCCe-EEEecccccCCCCCCCceE-------EEEeeeccCC--
Q 010252 340 KTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPL-FIRLKGLDLMRGSKDKARI-------LYAPVEEIGD-- 409 (514)
Q Consensus 340 ~~LHLTL~fLgl~~eeev~~A~~~L~~i~~~i~e~l~~~pf-~L~l~GLg~F~~dp~~pRV-------LyagV~~~~~-- 409 (514)
.++||.+ ..++|..|-++|..+--. ...|+ +-++..+..-+ .+.|| ||+++...+.
T Consensus 80 DK~HiSV------~~~qv~~AF~ai~~LL~S-----eDSPvDKWKVTDM~rv~---~qsRV~~GAQfTLY~Kpd~eds~Y 145 (218)
T 3i0u_A 80 DKFHISI------AREQVPLAFQILSGLLFS-----EDSPIDKWKITDMNRVS---QQSRVGIGAQFTLYVKSDQECSQY 145 (218)
T ss_dssp EEEEECB------CGGGHHHHHHHHHHHHTC-----TTCSCSEEEEECTTTCC-------CCSSCCEEEEEECCSSTTCC
T ss_pred ceEEEEe------cHHHHHHHHHHHHHHhcC-----CCCCcceeeecccccCc---chhhhcccceEEEEecCccccccC
Confidence 5789876 468999999999887310 23443 44444444443 23344 9999876542
Q ss_pred ----hhHHHHHHHHHHHHHHHCCCccc
Q 010252 410 ----GDRLLHACQVIIDAFNEAGLVFH 432 (514)
Q Consensus 410 ----~~~L~~La~~L~~~f~~~Gl~~e 432 (514)
..+...+...|+..|..+|+.+-
T Consensus 146 s~~~l~k~r~fi~~iE~~L~~agi~pg 172 (218)
T 3i0u_A 146 SALLLHKIRQFIMCLESNLLRSKIAPG 172 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 33456677889999999999864
No 78
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=24.28 E-value=41 Score=32.92 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=26.6
Q ss_pred CeEEEEecccc-ccccccCCCchhHHH--------HHHHhCcEEEc
Q 010252 153 RHSLSVEVGAS-VIRFIKGKEGSTQKK--------FEKEMGVKIIL 189 (514)
Q Consensus 153 ~~~~~v~Vp~~-~~~~IIGk~G~t~k~--------iE~eT~~kI~i 189 (514)
.....+.|.++ .-+.|||++|+++|+ ||+-+|+++.+
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 45677778875 456689999999987 45556666554
No 79
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=22.88 E-value=1.6e+02 Score=26.01 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhHHhhhhhcCCCCeEEEecccccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCcc
Q 010252 354 KDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVF 431 (514)
Q Consensus 354 eeev~~A~~~L~~i~~~i~e~l~~~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~La~~L~~~f~~~Gl~~ 431 (514)
++-++.+.++|.+-+ ...-..|.++|+..+-+ |.-+-...+...++.+++.|.+.+.+.|+.+
T Consensus 20 ~~l~~~i~~al~dkK-------a~DI~vlDv~~~s~~~D--------yfVIatg~S~rqv~Aiad~v~~~lk~~g~~~ 82 (136)
T 3ups_A 20 EMLLKLVTDSLDDDQ-------ALEIATIPLAGKSSIAD--------YMVIASGRSSRQVTAMAQKLADRIKAATGYV 82 (136)
T ss_dssp HHHHHHHHHHHHHTT-------CEEEEEEECTTTCSSCS--------EEEEEECSSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHcC-------CCCeEEEECCCCCcccC--------EEEEEEcCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 345556666666542 12446788899998887 4444433356789999999999999887643
No 80
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=22.05 E-value=1.6e+02 Score=26.08 Aligned_cols=77 Identities=9% Similarity=0.037 Sum_probs=45.0
Q ss_pred cccCCHHHHHHHHHHHHHhHHhhhhhcCCCCeEEEecccccC----------CCCCCCceEEEEeee-ccCChhHHHHHH
Q 010252 349 LKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLM----------RGSKDKARILYAPVE-EIGDGDRLLHAC 417 (514)
Q Consensus 349 Lgl~~eeev~~A~~~L~~i~~~i~e~l~~~pf~L~l~GLg~F----------~~dp~~pRVLyagV~-~~~~~~~L~~La 417 (514)
|.++++++.......+..+...+.+.+....+.+..-|-..| .+|+.-|..+|.... ..-+.+.|.+++
T Consensus 52 l~dL~~e~~~~l~~~~~~va~~l~~~~~~~g~N~~~aGq~V~HlH~HvIPR~~~D~~~p~pvw~~~~~~~~~~eel~~~a 131 (149)
T 3i4s_A 52 IIDLDEVQQAQLMTEISRVSRALKEITKCDKLNIAALGNLVPQLHVHIIARRTGDAAWPRPVWGVMQPLAHDATEVQNFI 131 (149)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECCSSCCSCCEEEEEECTTSTTTTSCCTTTSCCCCCCHHHHHHHH
T ss_pred hhHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecCCcCCEEEEEEECCcCCCCCCCccccCCCcCCCCCHHHHHHHH
Confidence 445677888777777777776666655444455544443333 344544455553211 111346788999
Q ss_pred HHHHHHHH
Q 010252 418 QVIIDAFN 425 (514)
Q Consensus 418 ~~L~~~f~ 425 (514)
+.|++.|.
T Consensus 132 ~~Ir~~L~ 139 (149)
T 3i4s_A 132 SALRRKIW 139 (149)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99987754
No 81
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=21.56 E-value=2.5e+02 Score=24.10 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=33.1
Q ss_pred cccCCCCceEEeeccccCCHHHHHHHHHHHHHhHHhhhhhcCCCCeEEEe
Q 010252 335 IFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRL 384 (514)
Q Consensus 335 ~fv~p~~LHLTL~fLgl~~eeev~~A~~~L~~i~~~i~e~l~~~pf~L~l 384 (514)
.+|-|.. |+ .-+.+++++++.....+++.+...+...+...++.+-+
T Consensus 36 ~LViPk~-h~--~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~ 82 (147)
T 1fit_A 36 VLVCPLR-PV--ERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSM 82 (147)
T ss_dssp EEEEESS-CC--SSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred EEEEEcc-cc--CChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3454544 64 34567788889888888888877777666666777776
No 82
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=21.27 E-value=1.1e+02 Score=27.11 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=39.6
Q ss_pred cCCCchhHHHHHHHhCcEEE-------cCCC-------------CCCCcEEEEcc----ChhHHHHHHHHHHHHHHHhhh
Q 010252 169 KGKEGSTQKKFEKEMGVKII-------LPSS-------------KKEDSIIIEGN----STDSVAKASEKIQAIIAEAVE 224 (514)
Q Consensus 169 IGk~G~t~k~iE~eT~~kI~-------iP~~-------------~~~~~I~I~G~----s~~~v~~A~~~I~~iv~~~~~ 224 (514)
=|+||.+.++. +|.++|. ||.. ..+|.|+|+.. ...+.+.|.+++..++.++..
T Consensus 23 sGpGGQnVNKv--~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~Nr~~A~~rL~~~l~~a~~ 100 (140)
T 4dh9_Y 23 QGAGGQHVNKT--STAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAMIKELTT 100 (140)
T ss_dssp CSSSSHHHHTT--CCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCccccc--cceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHHHHHHHHHHHHHHHHhcc
Confidence 48999998875 6677776 4430 01355778772 347899999999999999776
Q ss_pred CC
Q 010252 225 SP 226 (514)
Q Consensus 225 ~~ 226 (514)
.|
T Consensus 101 ~p 102 (140)
T 4dh9_Y 101 EK 102 (140)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 83
>3bo6_A Hydrophilic protein, VIRA protein; alpha/beta fold of phosphothreonine lyase; 1.40A {Chromobacterium violaceum} PDB: 2z8n_A 2z8m_A 2z8o_A* 2z8p_A* 2q8y_A*
Probab=20.16 E-value=3.3e+02 Score=25.70 Aligned_cols=90 Identities=14% Similarity=0.257 Sum_probs=56.2
Q ss_pred CCCceEEeeccccCCHHHHHHHHHHHHHhHHhhhhhcCCCCe-EEEecccccCCCCCCCceE-------EEEeeeccCC-
Q 010252 339 PKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPL-FIRLKGLDLMRGSKDKARI-------LYAPVEEIGD- 409 (514)
Q Consensus 339 p~~LHLTL~fLgl~~eeev~~A~~~L~~i~~~i~e~l~~~pf-~L~l~GLg~F~~dp~~pRV-------LyagV~~~~~- 409 (514)
-.++||.+. .++|..|-++|..+-- . ...|+ +-++..+..-.. +.|| ||+++...+.
T Consensus 81 GDKfHiSV~------~~qv~~AF~al~~LL~--S---eDSPvDKWKVTDM~rv~~---qsRV~~GAQfTLY~Kpd~edsq 146 (220)
T 3bo6_A 81 GDKFHISVQ------REQVPQAFQALSGLLF--S---VDSPIDKWKVTDMERVDQ---QSRVAVGAQFTLYVKPDQENSQ 146 (220)
T ss_dssp SEEEEECBC------GGGHHHHHHHHHHHHT--C---TTCSCSEEEEECTTTBCT---TSTTTSSCCEEEECCCSSTTSC
T ss_pred CceEEEEec------HHHHHHHHHHHHHhhc--C---CCCCcceeeeccccccch---hhhhcccceEEEEecCcccccc
Confidence 368898764 6889999999988731 0 23443 444444444432 2343 9999876542
Q ss_pred -----hhHHHHHHHHHHHHHHHCCCccccCCCCCceee
Q 010252 410 -----GDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLH 442 (514)
Q Consensus 410 -----~~~L~~La~~L~~~f~~~Gl~~e~~~~r~fkPH 442 (514)
..+...+...|+..|..+|+.+-+...-.+.|+
T Consensus 147 Ys~~~l~k~r~fi~~lE~~L~~aGi~pg~~P~SDV~p~ 184 (220)
T 3bo6_A 147 YSASSLHNTRQFIECLESRLSESGLMPGQYPESDVHPE 184 (220)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCBCCCCTTCBCCT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCcc
Confidence 334566778899999999998642222335543
No 84
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=20.08 E-value=32 Score=33.10 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=29.8
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEc
Q 010252 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIIL 189 (514)
Q Consensus 154 ~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~kI~i 189 (514)
-.+.+.|..+-.+.|||+.|.|+..|+.=++.-++-
T Consensus 92 ~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~ 127 (225)
T 3gku_A 92 KEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNK 127 (225)
T ss_dssp TEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCccceeecCCCeEhHHHHHHHHHHHHh
Confidence 456677777889999999999999999988866654
Done!