BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010253
(514 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 200 GVEGDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDP 259
G GD Y+++G + S E++KK Y +L+L HPDK P A +AF + A+ L +P
Sbjct: 4 GSSGDY-YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNP 62
Query: 260 EKRKALDE 267
EKRK D+
Sbjct: 63 EKRKQYDQ 70
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 197 RIMGVEGDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKCP-HPQAHQAFIKLNKAFKE 255
R + G+ Y V+G + N ++++IKK Y KL+L HPDK P +P+A F ++N A
Sbjct: 10 RSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAI 69
Query: 256 LQDPEKRKALDE 267
L D KR D+
Sbjct: 70 LTDATKRNIYDK 81
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 207 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPH-PQAHQAFIKLNKAFKELQDPEKRKAL 265
Y ++G + S+ I++ + KL+L +HPDK P+ P AH F+K+N+A++ L+D + RK
Sbjct: 5 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64
Query: 266 DE 267
D+
Sbjct: 65 DK 66
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 207 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPH-PQAHQAFIKLNKAFKELQDPEKRKAL 265
Y ++G + S+ I++ + KL+L +HPDK P+ P AH F+K+N+A++ L+D + RK
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 83
Query: 266 DE 267
D+
Sbjct: 84 DK 85
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 206 PYDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDPEKRKAL 265
PY V+G + S +IKK Y KL+ HPDK P A FI+++KA++ L + EKR
Sbjct: 19 PYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNY 78
Query: 266 D 266
D
Sbjct: 79 D 79
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 207 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDPEKRKALD 266
YDV+G N + E +KK Y KL+L HPDK +P + F ++++A++ L D +KR+ D
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPDK--NPNEGEKFKQISQAYEVLSDAKKRELYD 66
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 207 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDPEKRKALD 266
YD++G + S IKK + KL++ HPDK P A F ++ +A++ L D +RK D
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 207 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCP--HPQAHQAFIKLNKAFKELQDPEKRKA 264
Y+V+G + S E+IKK Y KL+L HPDK P +A + F +++A++ L D +KR
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 265 LD 266
D
Sbjct: 72 YD 73
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 207 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDPEKRKALD 266
YDV+G + S +KK Y K++L HPDK +P + F ++++A++ L D +KR+ D
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDK--NPDGAEQFKQISQAYEVLSDEKKRQIYD 68
Query: 267 E 267
+
Sbjct: 69 Q 69
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 200 GVEGDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKCP-HPQAHQAFIKLNKAFKELQD 258
G GD Y ++G N S + IKK Y++L+ HPD P+A + F +L +A++ L D
Sbjct: 4 GSSGDY-YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSD 62
Query: 259 PEKRKALD 266
KRK D
Sbjct: 63 EVKRKQYD 70
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 207 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDPEKRKALD 266
Y +G S E IK+ Y + +L HPDK P A + F ++ +A+ L DP KR+ D
Sbjct: 6 YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFD 65
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 207 YDVIGANHNMSAENIKKRYWKLSLFVHPDK-------CPHPQAHQAFIKLNKAFKELQDP 259
Y ++GA+ + + ++K++Y KL L HPDK + Q FI++++A+K L +
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78
Query: 260 EKRKALD 266
E +K D
Sbjct: 79 ETKKKYD 85
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 207 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPH--PQAHQAFIKLNKAFKELQDPEKRKA 264
Y+V+ S+E IKK Y KL+L HPDK P +A + F ++ +A++ L D +KR
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71
Query: 265 LD 266
D
Sbjct: 72 YD 73
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 207 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAH-QAFIKLNKAFKELQDPEKRKAL 265
YD++G + + + + +KK Y K +L HPDK P + F ++++AF+ L DP+KR+
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDK---PTGDTEKFKEISEAFEILNDPQKREIY 67
Query: 266 DE 267
D+
Sbjct: 68 DQ 69
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 207 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAF 246
+D++G S + + K Y KL++ +HPDKC P + AF
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAF 69
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 37.0 bits (84), Expect = 0.025, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 207 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPH-------PQAHQAFIKLNKAFKELQDP 259
Y ++GA+ + + ++K++Y KL L HPDK + Q FI++++A+K L +
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72
Query: 260 EKRKALD 266
E ++ D
Sbjct: 73 ETKREYD 79
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 203 GDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKC---PHPQ-AHQAFIKLNKAFKELQD 258
G+ + +G ++ E +KK Y K L VHPDK P+ Q A F++LN A+ E ++
Sbjct: 48 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 107
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 207 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQ--AHQAFIKLNKAFKELQDPEKRKA 264
Y+++ + SA++IKK Y + +L HPDK P + A + F ++ +A++ L D KR+
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 265 LD 266
D
Sbjct: 65 YD 66
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 36.2 bits (82), Expect = 0.042, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 207 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCP-HPQAHQAFIKLNKAFKELQDPEKRKAL 265
Y+++G + I+K Y +L++ HPD+ +A F ++ +A++ L D +KR A
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 266 DE 267
D+
Sbjct: 66 DQ 67
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 207 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCP-HPQAHQAFIKLNKAFKELQDPEKRKAL 265
Y+++G + I+K Y +L++ HPD+ +A F ++ +A++ L D +KR A
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 266 DE 267
D+
Sbjct: 66 DQ 67
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 36.2 bits (82), Expect = 0.045, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 207 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCP-HPQAHQAFIKLNKAFKELQDPEKRKAL 265
Y+++G + I+K Y +L++ HPD+ +A F ++ +A++ L D +KR A
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 266 DE 267
D+
Sbjct: 66 DQ 67
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 203 GDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKC---PHPQ-AHQAFIKLNKAFKELQD 258
G+ + +G ++ E +KK Y K L VHPDK P+ Q A F++LN A+ E ++
Sbjct: 116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 175
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 207 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPH----PQAHQAFIKLNKAFKELQDPEKR 262
Y ++G N + I K Y KL+L HPD + +A + FI + A + L DPE R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXR 444
Query: 263 KALDE 267
K D+
Sbjct: 445 KKFDD 449
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 207 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPH----PQAHQAFIKLNKAFKELQDPEKR 262
Y ++G N + I K Y KL+L HPD + +A + FI + A + L DPE R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444
Query: 263 KALDE 267
K D+
Sbjct: 445 KKFDD 449
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 203 GDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKC---PHPQ-AHQAFIKLNKAFKELQD 258
G+ + +G ++ E +KK Y K L VHPDK P+ Q A F +LN A+ E ++
Sbjct: 35 GETKWKPVGXADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKXIFXELNDAWSEFEN 94
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 32.7 bits (73), Expect = 0.46, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 202 EGDCPY------DVIGANHNMSAENIKKRYWKLSLFVHPDK-CPHPQAHQAFIKLNKAFK 254
+GDC Y D++G + IK Y++ HPD+ +A + F ++++A+
Sbjct: 9 QGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYV 68
Query: 255 ELQDPEKRKALDEKIKLKEE 274
L R+ D + E+
Sbjct: 69 VLGSATLRRKYDRGLLSDED 88
>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
Length = 94
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 203 GDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKC---PHPQ-AHQAFIKLNKAFKELQD 258
G+ + +G ++ E +KK Y K L VHP K P+ Q A F++LN A+ E ++
Sbjct: 33 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 92
>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 92
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 203 GDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKC---PHPQ-AHQAFIKLNKAFKELQD 258
G+ + +G ++ E +KK Y K L VHP K P+ Q A F++LN A+ E ++
Sbjct: 32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 200 GVEGDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDP 259
G E Y ++G + IK Y +L+ HPD P A F ++ +A++ L D
Sbjct: 1 GSELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDE 60
Query: 260 EKRKALDE 267
++R D+
Sbjct: 61 QRRAEYDQ 68
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 207 YDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDPEKRKALD 266
Y ++G + IK Y +L+ HPD A F L +A++ L+D ++R D
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYD 90
Query: 267 E 267
+
Sbjct: 91 Q 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,168,282
Number of Sequences: 62578
Number of extensions: 477281
Number of successful extensions: 1081
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1032
Number of HSP's gapped (non-prelim): 54
length of query: 514
length of database: 14,973,337
effective HSP length: 103
effective length of query: 411
effective length of database: 8,527,803
effective search space: 3504927033
effective search space used: 3504927033
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)