BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010254
(514 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 10/162 (6%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++ V G+ GK+ ++++ ++TFP + VP V + V + + DT E
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQ-E 65
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
D +L R AD +L ++ + + ++ W+PELR VP+I+VG KLDLRD+
Sbjct: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
Query: 135 NQQVSLEQVMMPI-MQQFREIETC------IECSALKQIQVK 169
Q +PI Q E++ IECS+ Q VK
Sbjct: 126 KQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVK 167
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C G GK+ +L S+ F +Y PT + ++ NVV
Sbjct: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV 48
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 10/162 (6%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++ V G+ GK+ L+++ ++TFP + VP V V + + DT E
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ-E 67
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
D +L R AD +L ++ + + +S W+PEL+ VP+++VG KLDLRD+
Sbjct: 68 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD 127
Query: 135 NQ-------QVSLEQVMMPIMQQFREIETCIECSALKQIQVK 169
Q V + V +++ IECS+ Q VK
Sbjct: 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVK 169
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C G GK+ LL S+ F +Y PT + ++ NVV
Sbjct: 10 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV 50
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 66/140 (47%), Gaps = 5/140 (3%)
Query: 3 KASAANSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPD 61
++ A P G V++V+ G+ G GK+SL++ A FP + P V +
Sbjct: 21 QSMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGK 80
Query: 62 RVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACD--RPETLDELSTFWLPELRRLEVK 119
V + I DT +D +L L DA VL D P + D + W PE+ K
Sbjct: 81 PVHLHIWDTAGQ-DDYDRL-RPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKK 138
Query: 120 VPVIVVGCKLDLRDENQQVS 139
VP+IVVGCK DLR + V+
Sbjct: 139 VPIIVVGCKTDLRKDKSLVN 158
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 376 GPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNV 410
G GK+ LL F F ++YTPT ERY VN+
Sbjct: 41 GDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNL 75
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIID 69
P +IVV G+ GK++L+ A D FP N VP V + R+ +++ D
Sbjct: 18 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWD 77
Query: 70 TPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKL 129
T S +DAV++ + RPETLD + W E++ +++VGCK
Sbjct: 78 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKS 137
Query: 130 DLRDE---------NQQVSLEQVMMPIMQQFREIETCIECSALK 164
DLR + ++Q + M + T IECSAL+
Sbjct: 138 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 181
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 374 VFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVN 409
V G + GK+ LL+ F F +NY PT E Y +
Sbjct: 28 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS 63
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 10/169 (5%)
Query: 6 AANSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVP 64
++ P +IVV G+ GK++L+ A D FP N VP V + R+
Sbjct: 18 GSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIE 77
Query: 65 ITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIV 124
+++ DT S +DAV++ + RPETLD + W E++ +++
Sbjct: 78 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 137
Query: 125 VGCKLDLRDE---------NQQVSLEQVMMPIMQQFREIETCIECSALK 164
VGCK DLR + ++Q + M + T IECSAL+
Sbjct: 138 VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 186
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 374 VFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVN 409
V G + GK+ LL+ F F +NY PT E Y +
Sbjct: 33 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS 68
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 16/175 (9%)
Query: 8 NSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPIT 66
G GG ++ VV G+ GK+ L+++ + FP +P V + D P+
Sbjct: 1 GGGSGGSQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDSKPVN 58
Query: 67 I--IDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVI 123
+ DT + ED +L + D ++ ++ P + + + W PE+R P+I
Sbjct: 59 LGLWDT-AGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII 117
Query: 124 VVGCKLDLRDENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
+VG KLDLRD+ + E+ + PI + +EI++ +ECSAL Q +K
Sbjct: 118 LVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLK 172
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 51
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 10 GPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITII 68
G +IVV G+ GK++L+ A D FP N VP V + R+ +++
Sbjct: 1 GSNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLW 60
Query: 69 DTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCK 128
DT S +DAV++ + RPETLD + W E++ +++VGCK
Sbjct: 61 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCK 120
Query: 129 LDLRDE---------NQQVSLEQVMMPIMQQFREIETCIECSALK 164
DLR + ++Q + M + T IECSAL+
Sbjct: 121 SDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 165
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 374 VFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERY 406
V G + GK+ LL+ F F +NY PT E Y
Sbjct: 12 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENY 44
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 16/176 (9%)
Query: 7 ANSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPI 65
+SG G ++ VV G+ GK+ L+++ + FP +P V + D P+
Sbjct: 1 GSSGSSGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPV 58
Query: 66 TI--IDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPV 122
+ DT + ED +L + D ++ ++ P + + + W PE+R P+
Sbjct: 59 NLGLWDT-AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI 117
Query: 123 IVVGCKLDLRDENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
I+VG KLDLRD+ + E+ + PI + +EI +ECSAL Q +K
Sbjct: 118 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 173
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM 52
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 14/181 (7%)
Query: 1 MAKASAANSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYP 60
+ K +A N K ++ VV G+ GK+ L+++ + FP P + +
Sbjct: 140 LIKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMV 198
Query: 61 DRVPITI--IDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLE 117
D P+ + DT + +ED +L + D ++ ++ P + + W PE+R
Sbjct: 199 DGKPVNLGLWDT-AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC 257
Query: 118 VKVPVIVVGCKLDLRDENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQV 168
P+I+VG KLDLRD+ + E+ + PI + +EI +ECSAL Q +
Sbjct: 258 PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 317
Query: 169 K 169
K
Sbjct: 318 K 318
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 364 QAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+A + + +C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 197
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 14/181 (7%)
Query: 1 MAKASAANSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYP 60
+ K +A N K ++ VV G+ GK+ L+++ + FP P + +
Sbjct: 140 LIKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMV 198
Query: 61 DRVPITI--IDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLE 117
D P+ + DT + +ED +L + D ++ ++ P + + W PE+R
Sbjct: 199 DGKPVNLGLWDT-AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC 257
Query: 118 VKVPVIVVGCKLDLRDENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQV 168
P+I+VG KLDLRD+ + E+ + PI + +EI +ECSAL Q +
Sbjct: 258 PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 317
Query: 169 K 169
K
Sbjct: 318 K 318
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 364 QAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+A + + +C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 197
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 14/181 (7%)
Query: 1 MAKASAANSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYP 60
+ K +A N K ++ VV G+ GK+ L+++ + FP P + +
Sbjct: 140 LIKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMV 198
Query: 61 DRVPITI--IDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLE 117
D P+ + DT + +ED +L + D ++ ++ P + + W PE+R
Sbjct: 199 DGKPVNLGLWDT-AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC 257
Query: 118 VKVPVIVVGCKLDLRDENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQV 168
P+I+VG KLDLRD+ + E+ + PI + +EI +ECSAL Q +
Sbjct: 258 PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 317
Query: 169 K 169
K
Sbjct: 318 K 318
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 364 QAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+A + + +C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 197
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 13/200 (6%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++ V G+ GK+ +++ ++ FP + +P V V + + DT E
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQ-E 68
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
D +L R AD VL ++ + + + W+PELRR VP+++VG KLDLRD+
Sbjct: 69 DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDD 128
Query: 135 NQQVSLEQVMMPIMQ--QFRE---IETCIECSALKQIQVKC-FNSP----LQPSEIVGVK 184
++ ++ Q + R+ IECS+ Q VK F++ LQP V
Sbjct: 129 KGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEVP 188
Query: 185 RVVQEKLREGVNERGLTLAG 204
R + R G + + G
Sbjct: 189 RRRKNHRRSGCSIASIVCGG 208
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 10/162 (6%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++ V G+ GK+ ++++ +TFP + VP V V + + DT E
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ-E 65
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
D +L R AD +L ++ + + + WLPEL+ +P+++VG KLDLRD+
Sbjct: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDD 125
Query: 135 NQ----QVSLEQVMMPIMQQFREIETCI---ECSALKQIQVK 169
Q + ++ R++ + ECS+ Q VK
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVK 167
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C G GK+ +L S+ G F +Y PT + ++ NVV
Sbjct: 8 KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV 48
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 17/176 (9%)
Query: 8 NSGPGGKT-GVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPI 65
G GG ++ VV G+ GK+ L+++ + FP +P V + D P+
Sbjct: 1 GGGSGGSMQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDSKPV 58
Query: 66 TI--IDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPV 122
+ DT + ED +L + D ++ ++ P + + + W PE+R P+
Sbjct: 59 NLGLWDT-AGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPI 117
Query: 123 IVVGCKLDLRDENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
I+VG KLDLRD+ + E+ + PI + +EI++ +ECSAL Q +K
Sbjct: 118 ILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLK 173
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 52
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 13/179 (7%)
Query: 2 AKASAANSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYP 60
A S+ GPG ++ VV G+ GK+ L+++ A D FP VP V +
Sbjct: 5 AGRSSMAHGPGALM-LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGG 63
Query: 61 DRVPITIIDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK 119
+ + + DT + ED +L D ++ ++ P + + W+PEL+
Sbjct: 64 KQYLLGLYDT-AGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN 122
Query: 120 VPVIVVGCKLDLRDENQQVSLEQVM--MPI-----MQQFREIETC--IECSALKQIQVK 169
VP +++G ++DLRD+ + ++ M PI + +EI C +ECSAL Q +K
Sbjct: 123 VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLK 181
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNV 410
+ +C V G GK+ LL S+ F + Y PT + YAV+V
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV 59
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 5/131 (3%)
Query: 10 GPGGKTGVR--IVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPIT 66
GP G +R +V+ G+ GK+ L++ + D FP VP V + +V +
Sbjct: 1 GPLGSAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELA 60
Query: 67 IIDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVV 125
+ DT + ED +L D +++ ++ D P++L+ + W PE++ VP+I+V
Sbjct: 61 LWDT-AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 119
Query: 126 GCKLDLRDENQ 136
G K DLR++
Sbjct: 120 GNKKDLRNDEH 130
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITI--IDTPSSV 74
++ VV G+ GK+ L+++ + FP P + + D P+ + DT + +
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDT-AGL 88
Query: 75 EDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD 133
ED +L + D ++ ++ P + + + W PE+R P+I+VG KLDLRD
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148
Query: 134 ENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
+ + E+ + PI + +EI +ECSAL Q +K
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 193
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+ +C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 72
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 16 GVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITI--IDTPS 72
++ VV G+ GK+ L+++ + FP +P V + D P+ + DT +
Sbjct: 6 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDT-A 62
Query: 73 SVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDL 131
+ED +L + D ++ ++ P + + + W PE+R P+I+VG KLDL
Sbjct: 63 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 122
Query: 132 RDENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
RD+ + E+ + PI + +EI +ECSAL Q +K
Sbjct: 123 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 169
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 48
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 33/189 (17%)
Query: 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVL------------PPTRL----- 54
G ++ VV G+ GK+ L+++ + FP P + P L
Sbjct: 1 GSMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 60
Query: 55 --PEDF---YPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFW 109
ED+ P P T+ +T +D G++ AD ++ ++ P + + + W
Sbjct: 61 AGQEDYDRLRPLSYPQTVGETYG--KDITSRGKDKPIADVFLICFSLVSPASFENVRAKW 118
Query: 110 LPELRRLEVKVPVIVVGCKLDLRDENQQVS--LEQVMMPI-----MQQFREIETC--IEC 160
PE+R P+I+VG KLDLRD+ + E+ + PI + +EI +EC
Sbjct: 119 YPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 178
Query: 161 SALKQIQVK 169
SAL Q +K
Sbjct: 179 SALTQRGLK 187
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 47
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 5/124 (4%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED 76
++V+ G+ GK+ L++ + FP VP V + RV + + DT ED
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQ-ED 70
Query: 77 RGKLGEELRRADA--VVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
+L L D+ V++ ++ D P++L+ + W+ E+ VP+I+VGCK+DLR++
Sbjct: 71 YDRL-RPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRND 129
Query: 135 NQQV 138
Q +
Sbjct: 130 PQTI 133
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 14/170 (8%)
Query: 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITI--ID 69
G ++ VV G+ GK+ L+++ + FP P + + D P+ + D
Sbjct: 18 GTMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWD 76
Query: 70 TPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCK 128
T ED +L + D ++ ++ P + + + W PE+R P+I+VG K
Sbjct: 77 TAGQ-EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 135
Query: 129 LDLRDENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
LDLRD+ + E+ + PI + +EI +ECSAL Q +K
Sbjct: 136 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 185
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 364 QAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
Q +C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 17 QGTMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 64
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITI--I 68
G ++ VV G+ GK+ L+++ + FP +P V + D P+ +
Sbjct: 1 GSPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLW 58
Query: 69 DTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGC 127
DT + ED +L + D ++ ++ P + + + W PE+R P+I+VG
Sbjct: 59 DT-AGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 117
Query: 128 KLDLRDENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
KLDLRD+ + E+ + PI + +EI +ECSAL Q +K
Sbjct: 118 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 168
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 47
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 14/165 (8%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITI--IDTPSSV 74
++ VV G+ GK+ L+++ + FP P + + D P+ + DT +
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDT-AGQ 88
Query: 75 EDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD 133
ED +L + D ++ ++ P + + + W PE+R P+I+VG KLDLRD
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148
Query: 134 ENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
+ + E+ + PI + +EI +ECSAL Q +K
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 193
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+ +C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 72
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 16 GVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITI--IDTPS 72
++ VV G+ GK+ L+++ + FP +P V + D P+ + DT +
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDT-A 59
Query: 73 SVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDL 131
+ED +L + D ++ ++ P + + + W PE+R P+I+VG KLDL
Sbjct: 60 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
Query: 132 RDENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
RD+ + E+ + PI + +EI +ECSAL Q +K
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 166
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 16 GVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITI--IDTPS 72
++ VV G+ GK+ L+++ + FP +P V + D P+ + DT +
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDT-A 59
Query: 73 SVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDL 131
+ED +L + D ++ ++ P + + + W PE+R P+I+VG KLDL
Sbjct: 60 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
Query: 132 RDENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
RD+ + E+ + PI + +EI +ECSAL Q +K
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 166
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 16 GVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITI--IDTPS 72
++ VV G+ GK+ L+++ + FP +P V + D P+ + DT +
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDSKPVNLGLWDT-A 59
Query: 73 SVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDL 131
ED +L + D ++ ++ P + + + W PE+R P+I+VG KLDL
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDL 119
Query: 132 RDENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
RD+ + E+ + PI + +EI++ +ECSAL Q +K
Sbjct: 120 RDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLK 166
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 15/127 (11%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPD------RVPITIIDT 70
++V+ G+ GK+ L++ + D FP VP V E++ D +V + + DT
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF------ENYVADIEVDGKQVELALWDT 63
Query: 71 PSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKL 129
+ +ED +L D +++ ++ D P++L+ + W PE++ VP+I+VG K
Sbjct: 64 -AGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 122
Query: 130 DLRDENQ 136
DLR++
Sbjct: 123 DLRNDEH 129
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Query: 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITI--IDTPSS 73
++ VV G+ GK+ L+++ + FP P + + D P+ + DT +
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDT-AG 60
Query: 74 VEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLR 132
ED +L + D ++ ++ P + + + W PE+R P+I+VG KLDLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 120
Query: 133 DENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
D+ + E+ + PI + +EI +ECSAL Q +K
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 166
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 16 GVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITI--IDTPS 72
++ VV G+ GK+ L+++ + FP +P V + D P+ + DT +
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDT-A 59
Query: 73 SVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDL 131
ED +L + D ++ ++ P + + + W PE+R P+I+VG KLDL
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
Query: 132 RDENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
RD+ + E+ + PI + +EI +ECSAL Q +K
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 166
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 16 GVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITI--IDTPS 72
++ VV G+ GK+ L+++ + FP +P V + D P+ + DT +
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDT-A 59
Query: 73 SVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDL 131
ED +L + D ++ ++ P + + + W PE+R P+I+VG KLDL
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
Query: 132 RDENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
RD+ + E+ + PI + +EI +ECSAL Q +K
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 166
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 16 GVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITI--IDTPS 72
++ VV G+ GK+ L+++ + FP +P V + D P+ + DT +
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDT-A 59
Query: 73 SVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDL 131
ED +L + D ++ ++ P + + + W PE+R P+I+VG KLDL
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
Query: 132 RDENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
RD+ + E+ + PI + +EI +ECSAL Q +K
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 166
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 14/166 (8%)
Query: 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITI--IDTPSS 73
++ VV G+ GK+ L+++ + FP P + + D P+ + DT +
Sbjct: 4 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDT-AG 61
Query: 74 VEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLR 132
ED +L + D ++ ++ P + + + W PE+R P+++VG KLDLR
Sbjct: 62 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR 121
Query: 133 DENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
D+ + ++ + PI + REI + +ECSAL Q +K
Sbjct: 122 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLK 167
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 46
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 6/167 (3%)
Query: 5 SAANSGPG----GKTGVRIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFY 59
S N+G G GK ++IVV G+ GK+ L++ + P A VP V +
Sbjct: 7 SDMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYK 66
Query: 60 PDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK 119
+ + + DT E +D V+L +A + + D +ST W PE++
Sbjct: 67 NEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT 126
Query: 120 VPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166
++VG K+DLR + +Q + Q+ + IE S++ +I
Sbjct: 127 AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAY-IEASSVAKI 172
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 14/166 (8%)
Query: 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITI--IDTPSS 73
++ VV G+ GK+ L+++ + FP P + + D P+ + DT +
Sbjct: 4 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDT-AG 61
Query: 74 VEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLR 132
ED +L + D ++ ++ P + + + W PE+R P+++VG KLDLR
Sbjct: 62 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR 121
Query: 133 DENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
D+ + ++ + PI + REI + +ECSAL Q +K
Sbjct: 122 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLK 167
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 46
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 6/171 (3%)
Query: 1 MAKASAANSGPG----GKTGVRIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLP 55
M S N+G G GK ++IVV G+ GK+ L++ + P A VP V
Sbjct: 4 MLAFSDMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHV 63
Query: 56 EDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRR 115
+ + + + DT E +D V+L +A + + D +ST W PE++
Sbjct: 64 MKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH 123
Query: 116 LEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166
++VG K+DLR + +Q + Q+ + IE S++ +I
Sbjct: 124 YIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAY-IEASSVAKI 173
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 16 GVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITI--IDTPS 72
++ VV G+ GK+ L+++ + FP +P V + D P+ + DT +
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDT-A 59
Query: 73 SVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDL 131
ED +L + D ++ ++ P + + + W PE+R P+I+VG KLDL
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
Query: 132 RDENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
RD+ + E+ + PI + +EI +ECSAL Q +K
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 166
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Query: 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITI--IDTPSS 73
++ VV G+ GK+ L+++ + FP P + + D P+ + DT
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 74 VEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLR 132
ED +L + D ++ ++ P + + + W PE+R P+++VG KLDLR
Sbjct: 62 -EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR 120
Query: 133 DENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
D+ + ++ + PI + REI + +ECSAL Q +K
Sbjct: 121 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLK 166
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 16/135 (11%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPD------RVPITIIDT 70
++V+ G+ GK+ L++ + D FP VP V E++ D +V + + DT
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF------ENYIADIEVDGKQVELALWDT 80
Query: 71 PSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKL 129
+ ED +L D +++ ++ D P++L+ + W PE++ VP+I+VG K
Sbjct: 81 -AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKK 139
Query: 130 DLR-DENQQVSLEQV 143
DLR DE+ + L ++
Sbjct: 140 DLRQDEHTRRELAKM 154
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 16 GVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITI--IDTPS 72
++ VV G+ GK+ L+++ + FP +P V + D P+ + DT +
Sbjct: 7 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDT-A 63
Query: 73 SVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDL 131
ED +L + D ++ ++ P + + + W PE+R P+I+VG KLDL
Sbjct: 64 GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 123
Query: 132 RDENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
RD+ + E+ + PI + +EI +ECSAL Q +K
Sbjct: 124 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 170
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 49
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 16 GVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITI--IDTPS 72
++ VV G+ GK+ L+++ + FP +P V + D P+ + DT +
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDT-A 59
Query: 73 SVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDL 131
ED +L + D ++ ++ P + + + W PE+R P+I+VG KLDL
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
Query: 132 RDENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
RD+ + E+ + PI + +EI +ECSAL Q +K
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 166
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED 76
++V+ G+ GK+ L++ + D FP VP V + +V + + DT + ED
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT-AGQED 65
Query: 77 RGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN 135
+L D +++ ++ D P++L+ + W PE++ VP+I+VG K DLR++
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 136 Q 136
Sbjct: 126 H 126
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED 76
++V+ G+ GK+ L++ + D FP VP V + +V + + DT + ED
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT-AGQED 63
Query: 77 RGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN 135
+L D +++ ++ D P++L+ + W PE++ VP+I+VG K DLR++
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 136 Q 136
Sbjct: 124 H 124
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 16 GVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITI--IDTPS 72
++ VV G+ GK+ L+++ + FP +P V + D P+ + DT +
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDT-A 59
Query: 73 SVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDL 131
ED +L + D ++ ++ P + + + W PE+R P+I+VG KLDL
Sbjct: 60 GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
Query: 132 RDENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
RD+ + E+ + PI + +EI +ECSAL Q +K
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 166
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED 76
++V+ G+ GK+ L++ + D FP VP V + +V + + DT + ED
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT-AGQED 65
Query: 77 RGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN 135
+L D +++ ++ D P++L+ + W PE++ VP+I+VG K DLR++
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 136 Q 136
Sbjct: 126 H 126
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED 76
++V+ G+ GK+ L++ + D FP VP V + +V + + DT + ED
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT-AGQED 66
Query: 77 RGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN 135
+L D +++ ++ D P++L+ + W PE++ VP+I+VG K DLR++
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 136 Q 136
Sbjct: 127 H 127
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED 76
++V+ G+ GK+ L++ + D FP VP V + +V + + DT + ED
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT-AGQED 67
Query: 77 RGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN 135
+L D +++ ++ D P++L+ + W PE++ VP+I+VG K DLR++
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 136 Q 136
Sbjct: 128 H 128
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED 76
++V+ G+ GK+ L++ + D FP VP V + +V + + DT + ED
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT-AGQED 63
Query: 77 RGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN 135
+L D +++ ++ D P++L+ + W PE++ VP+I+VG K DLR++
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 136 Q 136
Sbjct: 124 H 124
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPD------RVPITIIDTP 71
++V+ G+ GK+ L++ + D FPA V PT E++ D +V + + DT
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPA----VYVPTVF-ENYVADIEVDGKQVELALWDTA 61
Query: 72 SSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDL 131
+ D +++ ++ D P++L+ + W PE++ VP+I+VG K DL
Sbjct: 62 GQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
Query: 132 RDENQ 136
R++
Sbjct: 122 RNDEH 126
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED 76
++V+ G+ GK+ L++ + D FP VP V + +V + + DT + ED
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT-AGQED 65
Query: 77 RGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN 135
+L D +++ ++ D P++L+ + W PE++ VP+I+VG K DLR++
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 136 Q 136
Sbjct: 126 H 126
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED 76
++V+ G+ GK+ L++ + D FP VP V + +V + + DT + ED
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT-AGQED 68
Query: 77 RGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN 135
+L D +++ ++ D P++L+ + W PE++ VP+I+VG K DLR++
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 136 Q 136
Sbjct: 129 H 129
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED 76
++V+ G+ GK+ L++ + D FP VP V + +V + + DT + ED
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT-AGQED 67
Query: 77 RGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN 135
+L D +++ ++ D P++L+ + W PE++ VP+I+VG K DLR++
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 136 Q 136
Sbjct: 128 H 128
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 16 GVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITI--IDTPS 72
++ VV G+ GK+ L+++ + FP +P V + D P+ + DT +
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDT-A 59
Query: 73 SVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDL 131
ED +L + D ++ ++ P + + + W PE+R P+I+VG KLDL
Sbjct: 60 GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
Query: 132 RDENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
RD+ + E+ + PI + +EI +ECSAL Q +K
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 166
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED 76
++V+ G+ GK+ L++ + D FP VP V + +V + + DT + ED
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT-AGQED 67
Query: 77 RGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN 135
+L D +++ ++ D P++L+ + W PE++ VP+I+VG K DLR++
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 136 Q 136
Sbjct: 128 H 128
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED 76
++V+ G+ GK+ L++ + D FP VP V + +V + + DT + ED
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT-AGQED 65
Query: 77 RGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN 135
+L D +++ ++ D P++L+ + W PE++ VP+I+VG K DLR++
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 136 Q 136
Sbjct: 126 H 126
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED 76
++V+ G+ GK+ L++ + D FP VP V + +V + + DT + ED
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT-AGQED 66
Query: 77 RGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN 135
+L D +++ ++ D P++L+ + W PE++ VP+I+VG K DLR++
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 136 Q 136
Sbjct: 127 H 127
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 16/135 (11%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPD------RVPITIIDT 70
++V+ G+ GK+ L++ + D FP VP V E++ D +V + + DT
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF------ENYIADIEVDGKQVELALWDT 80
Query: 71 PSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKL 129
+ ED +L D +++ ++ D P++L+ + W PE++ VP+I+VG K
Sbjct: 81 -AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 139
Query: 130 DLR-DENQQVSLEQV 143
DLR DE+ + L ++
Sbjct: 140 DLRQDEHTRRELAKM 154
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 16/166 (9%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITI--IDTPSS 73
++ VV G+ GK+ L+++ + P +P V + D P+ + DT +
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVF--DNYSANVMVDGKPVNLGLWDT-AG 87
Query: 74 VEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLR 132
ED +L + D ++ ++ P + + + W PE+R P+I+VG KLDLR
Sbjct: 88 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147
Query: 133 DENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
D+ + E+ + PI + +EI +ECSAL Q +K
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 193
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+ +C V G GK+ LL S+ Y PT + Y+ NV+
Sbjct: 27 QGQAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM 72
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 16/135 (11%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPD------RVPITIIDT 70
++V+ G+ GK+ L++ + D FP VP V E++ D +V + + DT
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF------ENYIADIEVDGKQVELALWDT 60
Query: 71 PSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKL 129
+ ED +L D +++ ++ D P++L+ + W PE++ VP+I+VG K
Sbjct: 61 -AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
Query: 130 DLR-DENQQVSLEQV 143
DLR DE+ + L ++
Sbjct: 120 DLRQDEHTRRELAKM 134
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 14/166 (8%)
Query: 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITI--IDTPSS 73
++ VV G+ GK+ L+++ + F P + + D P+ + DT
Sbjct: 13 AIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQ 71
Query: 74 VEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLR 132
ED +L + D ++ ++ P + + + W PE+R P+I+VG KLDLR
Sbjct: 72 -EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 130
Query: 133 DENQQVS--LEQVMMPI-----MQQFREIETC--IECSALKQIQVK 169
D+ + E+ + PI + +EI +ECSAL Q +K
Sbjct: 131 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 176
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+ +C V G GK+ LL S+ FS Y PT + Y+ NV+
Sbjct: 10 QGQAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM 55
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 12/171 (7%)
Query: 10 GPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITII 68
GP G ++ VV G+ GK+ L+++ + FP+ VP V + + + +
Sbjct: 1 GPLGSQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLF 60
Query: 69 DTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGC 127
DT + ED +L + D ++ ++ P + + + W+PE+ K P ++VG
Sbjct: 61 DT-AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 119
Query: 128 KLDLRDENQQVS--LEQVMMPIMQQF-----REIETC--IECSALKQIQVK 169
++DLRD+ + + PI + R+++ +ECSAL Q +K
Sbjct: 120 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 170
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 6 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 49
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 4/129 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED 76
++VV G+ GK+ L++ + D FP VP V + +V + + DT ED
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ-ED 85
Query: 77 RGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLR-DE 134
+L D +++ ++ D P++L+ + W+PE++ VP+I+V K DLR DE
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145
Query: 135 NQQVSLEQV 143
+ + L ++
Sbjct: 146 HVRTELARM 154
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 12/174 (6%)
Query: 7 ANSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPI 65
+SG G ++ VV G+ GK+ L+++ + FP+ VP V + + +
Sbjct: 1 GSSGSSGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 60
Query: 66 TIIDTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIV 124
+ DT + ED +L + D ++ ++ P + + + W+PE+ K P ++
Sbjct: 61 GLFDT-AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL 119
Query: 125 VGCKLDLRDENQQVS--LEQVMMPIMQQF-----REIETC--IECSALKQIQVK 169
VG ++DLRD+ + + PI + R+++ +ECSAL Q +K
Sbjct: 120 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 173
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 9 QTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVM 52
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 26/171 (15%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED 76
++ VV G+ GK+ L+++ + FP+ P + F V + I P ++
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--------FDNYAVTVMIGGEPYTLGL 55
Query: 77 RGKLGEE----LR-----RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGC 127
R G+E LR + D ++ ++ P + + + W+PE+ K P ++VG
Sbjct: 56 RDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 128 KLDLRDENQQVS--LEQVMMPIMQQF-----REIETC--IECSALKQIQVK 169
++DLRD+ + + PI + R+++ +ECSAL Q +K
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 166
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLRE 425
+C V G GK+ LL S+ F Y PT + YAV V+ GG T+ LR+
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGLRD 57
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 12/171 (7%)
Query: 10 GPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITII 68
G G ++ VV G+ GK+ L+++ + FP+ VP V + + + +
Sbjct: 1 GAMGIQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLF 60
Query: 69 DTPSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGC 127
DT + +ED +L + D ++ ++ P + + + W+PE+ K P ++VG
Sbjct: 61 DT-AGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 119
Query: 128 KLDLRDENQQVS--LEQVMMPIMQQF-----REIETC--IECSALKQIQVK 169
++DLRD+ + + PI + R+++ +ECSAL Q +K
Sbjct: 120 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 170
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 6 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 49
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 78/169 (46%), Gaps = 12/169 (7%)
Query: 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDT 70
G ++ VV G+ GK+ L+++ + FP+ VP V + + + + DT
Sbjct: 1 GSMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 60
Query: 71 PSSVEDRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKL 129
+ ED +L + D ++ ++ P + + + W+PE+ K P ++VG ++
Sbjct: 61 -AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 119
Query: 130 DLRDENQQVS--LEQVMMPIMQQF-----REIETC--IECSALKQIQVK 169
DLRD+ + + PI + R+++ +ECSAL Q +K
Sbjct: 120 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 168
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 4 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 47
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 12/164 (7%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++ VV G+ GK+ L+++ + FP+ VP V + + + + DT + +E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT-AGLE 62
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
D +L + D ++ ++ P + + + W+PE+ K P ++VG ++DLRD+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
Query: 135 NQQVS--LEQVMMPIMQQF-----REIETC--IECSALKQIQVK 169
+ + PI + R+++ +ECSAL Q +K
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 166
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 10 GPGGKTGV-RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDR--VPIT 66
G GK+ + +I++ G+ G GKSSL+ + F + + + L +D D V +
Sbjct: 4 GSAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQ 63
Query: 67 IIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK----VPV 122
I DT R R +D +LT++ D ++ LS + + +VK P
Sbjct: 64 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF 123
Query: 123 IVVGCKLDLRDENQQVSLEQV 143
+++G K D+++ +QVS E+
Sbjct: 124 VILGNKTDIKE--RQVSTEEA 142
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++ VV G+ GK+ L+++ + FP+ VP V + + + + DT + E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDT-AGQE 62
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
D +L + D ++ ++ P + + + W+PE+ K P ++VG ++DLRD+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
Query: 135 NQQVS--LEQVMMPIMQQF-----REIETC--IECSALKQIQVK 169
+ + PI + R+++ +ECSAL Q +K
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 166
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y P + YAV V+
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVM 45
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++ VV G+ GK+ L+++ + FP+ VP V + + + + DT + E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDT-AGQE 62
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
D +L + D ++ ++ P + + + W+PE+ K P ++VG ++DLRD+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
Query: 135 NQQVS--LEQVMMPIMQQF-----REIETC--IECSALKQIQVK 169
+ + PI + R+++ +ECSAL Q +K
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 166
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNV 410
+C V G GK+ LL S+ F Y PT + YAV V
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTV 44
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++ VV G+ GK+ L+++ + FP+ VP V + + + + DT + E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT-AGQE 62
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
D +L + D ++ ++ P + + + W+PE+ K P ++VG ++DLRD+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
Query: 135 NQQVS--LEQVMMPIMQQF-----REIETC--IECSALKQIQVK 169
+ + PI + R+++ +ECSAL Q +K
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 166
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++ VV G+ GK+ L+++ + FP+ VP V + + + + DT + E
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT-AGQE 72
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
D +L + D ++ ++ P + + + W+PE+ K P ++VG ++DLRD+
Sbjct: 73 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 132
Query: 135 NQQVS--LEQVMMPIMQQF-----REIETC--IECSALKQIQVK 169
+ + PI + R+++ +ECSAL Q +K
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 176
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 12 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 55
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++ VV G+ GK+ L+++ + FP+ VP V + + + + DT + E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT-AGQE 65
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
D +L + D ++ ++ P + + + W+PE+ K P ++VG ++DLRD+
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 125
Query: 135 NQQVS--LEQVMMPIMQQF-----REIETC--IECSALKQIQVK 169
+ + PI + R+++ +ECSAL Q +K
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 169
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 365 AERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+ +C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 48
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++ VV G+ GK+ L+++ + FP+ VP V + + + + DT + E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT-AGQE 62
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
D +L + D ++ ++ P + + + W+PE+ K P ++VG ++DLRD+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
Query: 135 NQQVS--LEQVMMPIMQQF-----REIETC--IECSALKQIQVK 169
+ + PI + R+++ +ECSAL Q +K
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 166
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++ VV G+ GK+ L+++ + FP+ VP V + + + + DT + E
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT-AGQE 69
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
D +L + D ++ ++ P + + + W+PE+ K P ++VG ++DLRD+
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 129
Query: 135 NQQVS--LEQVMMPIMQQF-----REIETC--IECSALKQIQVK 169
+ + PI + R+++ +ECSAL Q +K
Sbjct: 130 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 173
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 9 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 52
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 75/164 (45%), Gaps = 12/164 (7%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++ VV G+ GK+ L+++ + FP+ VP V + + + + DT + E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT-AGQE 62
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
D +L + D ++ ++ P + + + W+PE+ K P ++VG ++DLRD+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
Query: 135 ---------NQQVSLEQVMMPIMQQFREIETCIECSALKQIQVK 169
N+Q + + + + +ECSAL Q +K
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLK 166
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++ VV G+ GK+ L+++ + FP+ VP V + + + + DT + E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT-AGQE 62
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
D +L + D ++ ++ P + + + W+PE+ K P ++VG ++DLRD+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
Query: 135 NQQVS--LEQVMMPIMQQF-----REIETC--IECSALKQIQVK 169
+ + PI + R+++ +ECSAL Q +K
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 166
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++ VV G+ GK+ L+++ + FP+ VP V + + + + DT + E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT-AGQE 62
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
D +L + D ++ ++ P + + + W+PE+ K P ++VG ++DLRD+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
Query: 135 NQQVS--LEQVMMPIMQQF-----REIETC--IECSALKQIQVK 169
+ + PI + R+++ +ECSAL Q +K
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLK 166
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
Query: 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDT 70
G G+++V+ G GKSSL+ A A A V + TR L E + D +P+ IIDT
Sbjct: 1 GSHGMKVVIAGRPNAGKSSLL-NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDT 59
Query: 71 PS------SVEDRG--KLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPV 122
VE G + +E+ +AD V+ + +D + W + RL K+P+
Sbjct: 60 AGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPI 118
Query: 123 IVVGCKLDLRDENQQVS 139
VV K D+ E +S
Sbjct: 119 TVVRNKADITGETLGMS 135
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++ VV G+ GK+ L+++ + FP+ VP V + + + + DT + E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT-AGQE 65
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
D +L + D ++ ++ P + + + W+PE+ K P ++VG ++DLRD+
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 125
Query: 135 NQQVS--LEQVMMPIMQQF-----REIETC--IECSALKQIQVK 169
+ + PI + R+++ +ECSAL Q +K
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 169
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 365 AERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+ +C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 48
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++V+ G+ GK++++ A D +P VP V + RV +++ DT S
Sbjct: 28 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 87
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
+DAV+L + RPET+D W E+ V+++GCK DLR +
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 146
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++ VV G+ GK+ L+++ + FP+ VP V + + + + DT + E
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT-AGQE 64
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
D +L + D ++ ++ P + + + W+PE+ K P ++VG ++DLRD+
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 124
Query: 135 NQQVS--LEQVMMPIMQQF-----REIETC--IECSALKQIQVK 169
+ + PI + R+++ +ECSAL Q +K
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 168
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 365 AERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+ +C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 1 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 47
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 26/171 (15%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED 76
V+ V+ G+ GK+SL+V+ + +P +P F +++ P ++
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTE--------YIPTAFDNFSAVVSVDGRPVRLQL 72
Query: 77 RGKLGEE----LR-----RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGC 127
G++ LR D +L ++ P + +S W+PE+R K P+I+VG
Sbjct: 73 CDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGT 132
Query: 128 KLDLR---------DENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVK 169
+ DLR D+ ++ + + ++ + + + IECSAL Q +K
Sbjct: 133 QSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLK 183
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++ VV G+ GK+ L+++ + FP+ VP V + + + + DT + E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT-AGQE 62
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
D +L + D ++ ++ P + + + W+PE+ K P ++VG ++DLRD+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
Query: 135 NQQVS--LEQVMMPIMQQF-----REIETC--IECSALKQIQVK 169
+ + PI + R+++ +ECSAL Q +K
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 166
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++ VV G+ GK+ L+++ + FP+ VP V + + + + DT + E
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT-AGQE 63
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
D +L + D ++ ++ P + + + W+PE+ K P ++VG ++DLRD+
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 123
Query: 135 NQQVS--LEQVMMPIMQQF-----REIETC--IECSALKQIQVK 169
+ + PI + R+++ +ECSAL Q +K
Sbjct: 124 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 167
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 3 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 46
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++ VV G+ GK+ L+++ + FP+ VP V + + + + DT + E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT-AGQE 62
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
D +L + D ++ ++ P + + + W+PE+ K P ++VG ++DLRD+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
Query: 135 NQQVS--LEQVMMPIMQQF-----REIETC--IECSALKQIQVK 169
+ + PI + R+++ +ECSAL Q +K
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 166
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++V+ G+ GK++++ A D +P VP V + RV +++ DT S
Sbjct: 11 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 70
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
+DAV+L + RPET+D W E+ V+++GCK DLR +
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 129
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++V+ G+ GK++++ A D +P VP V + RV +++ DT S
Sbjct: 12 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 71
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
+DAV+L + RPET+D W E+ V+++GCK DLR +
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 130
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 8/147 (5%)
Query: 10 GPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDR--VPITI 67
G G +++++ G+ G GKSSL+ + F + + L D D V + I
Sbjct: 1 GSGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQI 60
Query: 68 IDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK----VPVI 123
DT + R AD +LT++ D ++ + L + + +VK P +
Sbjct: 61 WDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFV 120
Query: 124 VVGCKLDLRDENQQVSLEQVMMPIMQQ 150
V+G K+D E++QV+ E+ M+
Sbjct: 121 VLGNKVD--KEDRQVTTEEAQTWCMEN 145
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++ VV G+ GK+ L+++ + FP+ VP V + + + + DT + E
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT-AGQE 62
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
D +L + D ++ ++ P + + + W+PE+ K P ++VG ++DLRD+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
Query: 135 NQQVS--LEQVMMPIMQQF-----REIETC--IECSALKQIQVK 169
+ + PI + R+++ +ECSAL Q +K
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 166
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ F Y PT + YAV V+
Sbjct: 2 QTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDR--VPITIID 69
G + ++++ G+ G GKSSL+ + F + + L +D D V + I D
Sbjct: 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 62
Query: 70 TPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK----VPVIVV 125
T R R +D +LT++ D ++ LS + + +VK P +++
Sbjct: 63 TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122
Query: 126 GCKLDLRDENQQVSLEQ 142
G K+D+ + +QVS E+
Sbjct: 123 GNKIDISE--RQVSTEE 137
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDR--VPITII 68
G + ++++ G+ G GKSSL+ + F + + L +D D V + I
Sbjct: 4 AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 63
Query: 69 DTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK----VPVIV 124
DT R R +D +LT++ D ++ LS + + +VK P ++
Sbjct: 64 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 123
Query: 125 VGCKLDLRDENQQVSLEQ 142
+G K+D+ + +QVS E+
Sbjct: 124 LGNKIDISE--RQVSTEE 139
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 12/136 (8%)
Query: 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTP 71
+ G+++V+ G GKSSL+ A A A V + TR L E + D +P+ IIDT
Sbjct: 5 REGMKVVIAGRPNAGKSSLL-NALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTA 63
Query: 72 S------SVEDRG--KLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVI 123
VE G + +E+ +AD V+ + +D + W + RL K+P+
Sbjct: 64 GLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPIT 122
Query: 124 VVGCKLDLRDENQQVS 139
VV K D+ E +S
Sbjct: 123 VVRNKADITGETLGMS 138
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 12/164 (7%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75
++ VV G+ GK+ L+++ + P+ VP V + + + + DT + E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT-AGQE 62
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
D +L + D ++ ++ P + + + W+PE+ K P ++VG ++DLRD+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122
Query: 135 NQQVS--LEQVMMPIMQQF-----REIETC--IECSALKQIQVK 169
+ + PI + R+++ +ECSAL Q +K
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 166
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
+C V G GK+ LL S+ Y PT + YAV V+
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVM 45
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 12/132 (9%)
Query: 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDT 70
G G ++V+ G GKSSL+ A A A V + TR L E + D P+ IIDT
Sbjct: 1 GSHGXKVVIAGRPNAGKSSLL-NALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDT 59
Query: 71 PS------SVEDRG--KLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPV 122
VE G + +E+ +AD V+ + +D + W + RL K+P+
Sbjct: 60 AGLREASDEVERIGIERAWQEIEQADRVLFXVDGTTTDAVDP-AEIWPEFIARLPAKLPI 118
Query: 123 IVVGCKLDLRDE 134
VV K D+ E
Sbjct: 119 TVVRNKADITGE 130
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 17/133 (12%)
Query: 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFY-------PDRVPITI 67
T ++I++ GE G GKSSL++ DTF P L T + DF ++ + I
Sbjct: 14 TTLKILIIGESGVGKSSLLLRFTDDTF----DPELAAT-IGVDFKVKTISVDGNKAKLAI 68
Query: 68 IDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVI--VV 125
DT R R A V+L Y R +T +L WL EL + ++ +V
Sbjct: 69 WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNXLV 127
Query: 126 GCKLDLRDENQQV 138
G K+D EN++V
Sbjct: 128 GNKID--KENREV 138
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFY-PDR-VPITIIDTPSSVE 75
++V GE+ GK+SLI D+F + L + Y DR + + + DT
Sbjct: 8 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 67
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDE 134
R + +R + A V+ Y + + +T W+ ++R V +++VG K DL D+
Sbjct: 68 FRSLIPSYIRDSAAAVVVYDITNVNSFQQ-TTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 135 NQQVSLEQ 142
+QVS+E+
Sbjct: 127 -RQVSIEE 133
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFY-PDR-VPITIIDTPSSVE 75
++V GE+ GK+SLI D+F + L + Y DR V + + DT
Sbjct: 3 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDE 134
R + +R + V+ Y + + +T W+ ++R V +++VG K DL D+
Sbjct: 63 FRSLIPSYIRDSTVAVVVYDITNVNSFQQ-TTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 135 NQQVSLEQ 142
+QVS+E+
Sbjct: 122 -RQVSIEE 128
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 6/129 (4%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVED 76
++++ G G GKS+L + D F + P + R + V I I+DT + +ED
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDT-AGLED 67
Query: 77 RGKLGEE-LRRADAVVLTYACDRPETLDELSTF--WLPELRRLEVKVPVIVVGCKLDLRD 133
+ + R + +L ++ E+ + F + ++ E K+P++VVG K DL +
Sbjct: 68 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL-E 126
Query: 134 ENQQVSLEQ 142
E +QV +E+
Sbjct: 127 ERRQVPVEE 135
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 14/145 (9%)
Query: 10 GPGGKTG---------VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFY- 59
GPG TG ++V GE+ GK+SLI D+F + L + Y
Sbjct: 1 GPGMSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL 60
Query: 60 PDR-VPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELR-RLE 117
DR V + + DT R + +R + V+ Y + + +T W+ ++R
Sbjct: 61 EDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQ-TTKWIDDVRTERG 119
Query: 118 VKVPVIVVGCKLDLRDENQQVSLEQ 142
V +++VG K DL D+ +QVS+E+
Sbjct: 120 SDVIIMLVGNKTDLADK-RQVSIEE 143
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 6/129 (4%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVED 76
++++ G G GKS+L + D F + P + R + V I I+DT + +ED
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDT-AGLED 63
Query: 77 RGKLGEE-LRRADAVVLTYACDRPETLDELSTF--WLPELRRLEVKVPVIVVGCKLDLRD 133
+ + R + +L ++ E+ + F + ++ E K+P++VVG K DL +
Sbjct: 64 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL-E 122
Query: 134 ENQQVSLEQ 142
E +QV +E+
Sbjct: 123 ERRQVPVEE 131
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFY-PDR-VPITIIDTPSSVE 75
++V GE+ GK+SLI D+F + L + Y DR V + + DT
Sbjct: 16 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 75
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELR-RLEVKVPVIVVGCKLDLRDE 134
R + +R + V+ Y + + S W+ ++R V +++VG K DL D+
Sbjct: 76 FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSK-WIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 135 NQQVSLEQ 142
+QVS E+
Sbjct: 135 -RQVSTEE 141
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 14/133 (10%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDR-VPITIIDTPSSVE 75
V++ + G G GKS+L+V F P L T + D V + I+DT E
Sbjct: 29 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQ-E 87
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRL--EVKVP----VIVVGCKL 129
D + +R + VL Y + +E+ LP L+ + E+K P +I+VG K
Sbjct: 88 DTIQREGHMRWGEGFVLVYDITDRGSFEEV----LP-LKNILDEIKKPKNVTLILVGNKA 142
Query: 130 DLRDENQQVSLEQ 142
DL D ++QVS E+
Sbjct: 143 DL-DHSRQVSTEE 154
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 16/128 (12%)
Query: 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPI------- 65
G T ++VV G G GKS+L + + F P + ED Y +V I
Sbjct: 1 GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI------EDSYRKQVVIDGETCLL 54
Query: 66 TIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLE--VKVPVI 123
I+DT E + +R + + +A + ++ +++ + +++R++ VP++
Sbjct: 55 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH-HYREQIKRVKDSEDVPMV 113
Query: 124 VVGCKLDL 131
+VG K DL
Sbjct: 114 LVGNKCDL 121
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
++ V G GKS L + F D Y PT ++ Y VV
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV 46
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPEDF-YPDRVPITIIDTPSSVE 75
++++ G GK+S + A DTF PA V V ++ + + RV + I DT
Sbjct: 25 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER 84
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEV-KVPVIVVGCKLDLRDE 134
R R A +L Y E+ + + W +++ VI+VG K D+ +E
Sbjct: 85 YRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYSWDNAQVILVGNKCDMEEE 143
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFY-PDR-VPITIIDTPSSVE 75
++V GE+ GK+SLI D+F + L + Y DR V + + DT
Sbjct: 4 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDE 134
R + +R + V+ Y + + S W+ ++R V +++VG K DL D+
Sbjct: 64 FRSLIPSYIRDSTVAVVVYDITNLNSFQQTSK-WIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 135 NQQVSLEQ 142
+Q+++E+
Sbjct: 123 -RQITIEE 129
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE--DFYPDRVPITIID 69
G +++ + G+ G GKSS++ D+F N+ P + + + + + + I D
Sbjct: 1 GSLRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 60
Query: 70 TPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCK 128
T R R + A ++ Y + ET L W+ ELR+ + V + G K
Sbjct: 61 TAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHGPPSIVVAIAGNK 119
Query: 129 LDLRD 133
DL D
Sbjct: 120 CDLTD 124
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFY-PDR-VPITIIDTPSSVE 75
++V GE+ GK+SLI D+F + L + Y DR + + + DT
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLER 74
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELR-RLEVKVPVIVVGCKLDLRDE 134
R + +R + A V+ Y + + +T W+ ++R V +++VG K DL D+
Sbjct: 75 FRSLIPSYIRDSAAAVVVYDITNVNSFQQ-TTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 135 NQQVSLEQ 142
+QVS+E+
Sbjct: 134 -RQVSIEE 140
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFY-PDR-VPITIIDTPSSVE 75
++V GE+ GK+SLI D+F + L + Y DR V + + DT
Sbjct: 8 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLER 67
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDE 134
R + +R + V+ Y + + +T W+ ++R V +++VG K DL D+
Sbjct: 68 FRSLIPSYIRDSTVAVVVYDITNVNSFQQ-TTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 135 NQQVSLEQ 142
+QVS+E+
Sbjct: 127 -RQVSIEE 133
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPI--TIIDTPSSVE 75
++V+ G+ GTGK++ + F P L P F+ +R PI + DT +
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD 133
G +A ++ + T + W +L R+ +P+++ G K+D++D
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVED 76
++VV G G GKS+L V F P + + R + + + I+DT + +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQF 64
Query: 77 RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCKLDLRDE 134
++ L Y+ T ++L LR + VP+I+VG K DL DE
Sbjct: 65 TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDE 123
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 14/125 (11%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPI-------TIIDT 70
++VV G G GKS+L V F P + ED Y +V + I+DT
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI------EDSYRKQVEVDCQQCMLEILDT 58
Query: 71 PSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCKL 129
+ + ++ L Y+ T ++L LR + + VP+I+VG K
Sbjct: 59 AGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKC 118
Query: 130 DLRDE 134
DL DE
Sbjct: 119 DLEDE 123
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVED 76
++VV G G GKS+L V F P + + R + + + I+DT + +
Sbjct: 7 KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQF 66
Query: 77 RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCKLDLRDE 134
++ L Y+ T ++L LR + VP+I+VG K DL DE
Sbjct: 67 TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDE 125
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 14/125 (11%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPI-------TIIDT 70
++VV G G GKS+L V F P + ED Y +V + I+DT
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTI------EDSYRKQVEVDCQQCMLEILDT 58
Query: 71 PSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCKL 129
+ + ++ L Y+ T ++L LR + + VP+I+VG K
Sbjct: 59 AGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKC 118
Query: 130 DLRDE 134
DL DE
Sbjct: 119 DLEDE 123
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERY 406
++ V G GKS L F+ F D Y PT ++ Y
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSY 40
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 6 AANSGPGGKTGV---RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPD 61
AAN P G+ + ++++ G G GKS+L + D F + P + R +
Sbjct: 2 AANK-PKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 60
Query: 62 RVPITIIDTPSSVEDRGKLGEE-LRRADAVVLTYACDRPETLDELSTFWLPELR-RLEVK 119
V I I+DT ED + + R + + ++ E+ + F LR + +
Sbjct: 61 EVQIDILDTAGQ-EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 119
Query: 120 VPVIVVGCKLDLRDENQQVSLEQ 142
VP ++VG K DL D+ +QVS+E+
Sbjct: 120 VPFLLVGNKSDLEDK-RQVSVEE 141
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE--DFYPDRVPITIIDTPSSVE 75
++V+ GE GK+SL++ + F L + L + + RV + I DT E
Sbjct: 22 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ-E 80
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRR-LEVKVPVIVVGCKLDLRD 133
LG R ++ +L Y ++ ++ W+ ELR+ L ++ + +VG K+DL
Sbjct: 81 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICLCIVGNKIDLEK 139
Query: 134 ENQQVSLEQ 142
E + VS+++
Sbjct: 140 E-RHVSIQE 147
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVED 76
++++ G G GKS+L + D F + P + R + V I I+DT + +ED
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDT-AGLED 66
Query: 77 RGKLGEE-LRRADAVVLTYACDRPETLDELSTFWLPELR-RLEVKVPVIVVGCKLDLRDE 134
+ + R + + ++ E+ + F LR + + VP ++VG K DL D+
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 135 NQQVSLEQ 142
+QVS+E+
Sbjct: 127 -RQVSVEE 133
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPI--TIIDTPSSVE 75
++V GE+ GK+S+I DTF N + L + Y D P+ + DT
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCKLDLRD 133
R + +R + A ++ Y ++ E +T W+ ++ K V + +VG K DL D
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSF-ENTTKWIQDILNERGKDVIIALVGNKTDLGD 120
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE--DFYPDRVPITIIDTPSSV 74
+++ + G+ G GKSS++ D+F N+ P + + + + + + I DT
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 75 EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRD 133
R R + A ++ Y + ET L W+ ELR+ + V + G K DL D
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHGPPSIVVAIAGNKCDLTD 125
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 7/126 (5%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE--DFYPDRVPITIIDTPSSVE 75
+IV+ G G GK+ L+ FP + + + + ++V + I DT
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEV-KVPVIVVGCKLDL--- 131
R R A+A++LTY E+ L WL E+ + KV ++VG K+DL
Sbjct: 88 FRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYASNKVITVLVGNKIDLAER 146
Query: 132 RDENQQ 137
R+ +QQ
Sbjct: 147 REVSQQ 152
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPD--RVPITIIDTPSSVE 75
+IV+ G+ GKSS ++ + F N+ L + D R + + DT
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELR-RLEVKVPVIVVGCKLDLRD 133
R R+AD V+L Y ++ + W+ + VP+++VG K D+RD
Sbjct: 90 FRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE-WVDMIEDAAHETVPIMLVGNKADIRD 147
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVED 76
++++ G G GKS+L + D F + P + R + V I I+DT ED
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ-ED 78
Query: 77 RGKLGEE-LRRADAVVLTYACDRPETLDELSTFWLPELR-RLEVKVPVIVVGCKLDLRDE 134
+ + R + + ++ E+ + F LR + + VP ++VG K DL D+
Sbjct: 79 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 135 NQQVSLEQ 142
+QVS+E+
Sbjct: 139 -RQVSVEE 145
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVED 76
++++ G G GKS+L + D F + P + R + V I I+DT ED
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ-ED 66
Query: 77 RGKLGEE-LRRADAVVLTYACDRPETLDELSTFWLPELR-RLEVKVPVIVVGCKLDLRDE 134
+ + R + + ++ E+ + F LR + + VP ++VG K DL D+
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 135 NQQVSLEQ 142
+QVS+E+
Sbjct: 127 -RQVSVEE 133
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVED 76
++++ G G GKS+L + D F + P + R + V I I+DT ED
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ-ED 64
Query: 77 RGKLGEE-LRRADAVVLTYACDRPETLDELSTFWLPELR-RLEVKVPVIVVGCKLDLRDE 134
+ + R + + ++ E+ + F LR + + VP ++VG K DL D+
Sbjct: 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 135 NQQVSLEQ 142
+QVS+E+
Sbjct: 125 -RQVSVEE 131
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPI--TIIDTPSSVE 75
++V+ G+ GTGK++ + F P L P F+ +R PI + DT +
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD 133
G +A ++ + T + W +L R+ +P+++ G K+D++D
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 16/178 (8%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLP---PTRLPEDFYPDRVPITIIDTPSSV 74
+IV+ G+ G GKS+L+ D F + T+ + + I DT
Sbjct: 9 KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 75 EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELR-RLEVKVPVIVVGCKLDLRD 133
R R A +L Y + + + + WL ELR + + +++VG K DL+
Sbjct: 69 RYRAITSAYYRGAVGALLVYDITKKNSFENIEK-WLKELRDNADSNIVILLVGNKSDLK- 126
Query: 134 ENQQVSLEQVMMPIMQQFREIETC--IECSALKQIQVK-CFNSPLQPSEIVGVKRVVQ 188
L + Q+ + E IE SAL+ V+ F+ L +EI V++ Q
Sbjct: 127 -----HLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLL--NEIYNVRQKKQ 177
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 5/132 (3%)
Query: 4 ASAANSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRV 63
ASAA P + ++V+ G+ GTGK++ + F L P F+ +R
Sbjct: 5 ASAAQGEP--QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 62
Query: 64 PI--TIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP 121
PI + DT + G +A ++ + T + W +L R+ +P
Sbjct: 63 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIP 121
Query: 122 VIVVGCKLDLRD 133
+++ G K+D++D
Sbjct: 122 IVLCGNKVDIKD 133
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVP-------ITIIDT 70
R+ V G G GKSSL++ TF + P + ED Y + + I DT
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV------EDTYRQVISCDKSICTLQITDT 58
Query: 71 PSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFW--LPELRRLEVKVPVIVVGCK 128
S + + + A +L Y+ ++L+EL + + E++ +P+++VG K
Sbjct: 59 TGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK 118
Query: 129 LD 130
D
Sbjct: 119 CD 120
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERY 406
N ++ VFG GKS L+ F+ F ++Y PT ++ Y
Sbjct: 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY 40
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 4/126 (3%)
Query: 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPEDFYPD-RVPITIID 69
G ++++ G GK+S + A D+F PA V V ++ + D R+ + I D
Sbjct: 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWD 77
Query: 70 TPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEV-KVPVIVVGCK 128
T R R A +L Y E+ + W +++ VI+VG K
Sbjct: 78 TAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD-WATQIKTYSWDNAQVILVGNK 136
Query: 129 LDLRDE 134
DL DE
Sbjct: 137 CDLEDE 142
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 13/161 (8%)
Query: 2 AKASAANSGPGGKTGV-RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP--TRLPEDF 58
A + A+ P ++ + +I+V G+ GK+ L A FP + D
Sbjct: 14 AVSGASGCLPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI 73
Query: 59 YPDRVPITIIDTPSSVEDRGKLGEE-LRRADAVVLTYACDRPETLDELSTFWLPELRR-- 115
+R+ I + DT R + + R AVV Y + L W+ E ++
Sbjct: 74 DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPA-WIEECKQHL 132
Query: 116 LEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIET 156
L +P I+VG K DLR S QV + Q+F + +
Sbjct: 133 LANDIPRILVGNKCDLR------SAIQVPTDLAQKFADTHS 167
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPI--TIIDTPSSVE 75
++V+ G+ GTGK++ + F L P F+ +R PI + DT +
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD 133
G +A ++ + T + W +L R+ +P+++ G K+D++D
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 12/144 (8%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP--TRLPEDFYPDRVPITIIDTPSSVE 75
+I+V G+ GK+ L A FP + D +R+ I + DT
Sbjct: 22 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 81
Query: 76 DRGKLGEE-LRRADAVVLTYACDRPETLDELSTFWLPELRR--LEVKVPVIVVGCKLDLR 132
R + + R AVV Y + L W+ E ++ L +P I+VG K DLR
Sbjct: 82 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLR 140
Query: 133 DENQQVSLEQVMMPIMQQFREIET 156
S QV + Q+F + +
Sbjct: 141 ------SAIQVPTDLAQKFADTHS 158
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 4/120 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPEDFYPD-RVPITIIDTPSSVE 75
+I++ G GK+S + A D+F PA V V ++ + D R+ + I DT
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEV-KVPVIVVGCKLDLRDE 134
R R A +L Y E+ + + W +++ V++VG K D DE
Sbjct: 70 YRTITTAYYRGAXGFILXYDITNEESFNAVQD-WSTQIKTYSWDNAQVLLVGNKCDXEDE 128
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 13/139 (9%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLP---PTRLPEDFYPDRVPITIIDTPSSV 74
+IV+ G+ G GKS+L+ D F + TR E ++ I DT
Sbjct: 12 KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIE-VENKKIKAQIWDTAGLE 70
Query: 75 EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELR-RLEVKVPVIVVGCKLDL-- 131
R R A ++ Y + + E WL ELR + V V ++G K DL
Sbjct: 71 RYRAITSAYYRGAVGALIVYDISKSSSY-ENCNHWLTELRENADDNVAVGLIGNKSDLAH 129
Query: 132 -----RDENQQVSLEQVMM 145
DE + ++E M+
Sbjct: 130 LRAVPTDEAKNFAMENQML 148
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPI--TIIDTPSSVE 75
++V+ G+ GTGK++ + F L P F+ +R PI + DT + +E
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT-AGLE 72
Query: 76 DRGKLGEELR-RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
G L + +A ++ + T + W +L R+ +P+++ G K+D++D
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDR 131
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPI--TIIDTPSSVE 75
++V+ G+ GTGK++ + F L P F+ +R PI + DT + +E
Sbjct: 8 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT-AGLE 66
Query: 76 DRGKLGEELR-RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134
G L + +A ++ + T + W +L R+ +P+++ G K+D++D
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDR 125
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 4/135 (2%)
Query: 10 GPGGKTGVRIVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPE-DFYPDRVPITI 67
GP G + ++I++ G+ G GKS L+V D F P+ + + ++ D +V + +
Sbjct: 1 GPLGSSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQL 60
Query: 68 IDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGC 127
DT R R A ++L Y T + ++ + +++VG
Sbjct: 61 WDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 120
Query: 128 KLDLRDENQQVSLEQ 142
K D+ E + V+ +Q
Sbjct: 121 KSDM--ETRVVTADQ 133
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPD--RVPITIIDTPSSVE 75
++++ G G GKS L++ + DT+ + + + D V + I DT
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCKLDLRDE 134
R R + +++ Y E+ + + WL E+ R V ++VG K DL+D+
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLVGNKCDLKDK 128
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLP---PTRLPEDFYPDRVPITIIDTPSSV 74
++++ G+ G GKSSL++ A +TF + + R E ++V + I DT
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVE-INGEKVKLQIWDTAGQE 69
Query: 75 EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLD 130
R R V++ Y E+ + WL E+ + V I+VG K D
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-WLHEINQNCDDVCRILVGNKND 124
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPD--RVPITIIDTPSSVE 75
++++ G G GKS L++ + DT+ + + + D V + I DT
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCKLDLRDE 134
R R + +++ Y E+ + + WL E+ R V ++VG K DL+D+
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLVGNKCDLKDK 128
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 66/147 (44%), Gaps = 28/147 (19%)
Query: 12 GGKTGV-RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDT 70
G K G+ ++++ GE G GKS+L A TF PED Y R+ + +
Sbjct: 18 GQKDGIFKVMLVGESGVGKSTL-----AGTFGGLQGDSAHEPENPEDTYERRIMVDKEEV 72
Query: 71 PSSVED---RGKLGEELR-----RADAVVLTYA-CDR------PETLDELSTFWLPELRR 115
V D +G G LR DA ++ ++ DR PETL L R
Sbjct: 73 TLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAG------R 126
Query: 116 LEVKVPVIVVGCKLDLRDENQQVSLEQ 142
+PVI+VG K DL +++VSLE+
Sbjct: 127 PHHDLPVILVGNKSDL-ARSREVSLEE 152
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPI--TIIDTPSSVE 75
++V+ G+ GTGK++ + F L P F+ +R PI + DT +
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD 133
G +A ++ + T + W +L R+ +P+++ G K+D++D
Sbjct: 65 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 121
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPI--TIIDTPSSVE 75
++V+ G+ GTGK++ + F L P F+ +R PI + DT +
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD 133
G +A ++ + T + W +L R+ +P+++ G K+D++D
Sbjct: 72 YGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPD--RVPITIIDTPSSVE 75
++++ G G GKS L++ + DT+ + + + D V + I DT
Sbjct: 23 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 82
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCKLDLRDE 134
R R + +++ Y E+ + + WL E+ R V ++VG K DL+D+
Sbjct: 83 FRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLVGNKCDLKDK 141
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPI--TIIDTPSSVE 75
++V+ G+ GTGK++ + F L P F+ +R PI + DT +
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD 133
G +A ++ + T + W +L R+ +P+++ G K+D++D
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 19/135 (14%)
Query: 9 SGPGGKTGVRIVVCGEKGTGKSSL--IVTAAADTFPANVPPVLPPTRLPEDFYP------ 60
S G T R+V+ GE+G GKS+L I D+ ++ L ED Y
Sbjct: 30 SSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV------LGEDTYERTLMVD 83
Query: 61 -DRVPITIIDTPSSVEDRGKLGEE-LRRADAVVLTYACDRPETLDELSTFWLPELRRLEV 118
+ I ++D + + L + ++ DA ++ Y+ + ++ S + +LRR
Sbjct: 84 GESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRI-QLRRARQ 142
Query: 119 K--VPVIVVGCKLDL 131
+P+I+VG K DL
Sbjct: 143 TEDIPIILVGNKSDL 157
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPI--TIIDTPSSVE 75
++V+ G+ GTGK++ + F L P F+ +R PI + DT +
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD 133
G +A ++ + T + W +L R+ +P+++ G K+D++D
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPI--TIIDTPSSVE 75
++V+ G+ GTGK++ + F L P F+ +R PI + DT +
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD 133
G +A ++ + T + W +L R+ +P+++ G K+D++D
Sbjct: 72 FGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 336 NLIYIGYPGDPSSAIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSVLLNSFLGRPFS 395
+L +I +PG P+ +VT K ++++K + R V + +G + + + +
Sbjct: 293 SLFWIAHPGGPAILDQVTAKVGLEKEKLKVTRQVLK--DYGNMSSATVFFIMDEMRKKSL 350
Query: 396 DNYTPTTDE--RYAVNVVDQPGGTKKTVVLREIP 427
+N TT E + V PG T +TVVLR +P
Sbjct: 351 ENGQATTGEGLEWGVLFGFGPGITVETVVLRSVP 384
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 336 NLIYIGYPGDPSSAIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSVLLNSFLGRPFS 395
+L +I +PG P+ +VT K ++++K + R V + +G + + + +
Sbjct: 293 SLFWIAHPGGPAILDQVTAKVGLEKEKLKVTRQVLK--DYGNMSSATVFFIMDEMRKKSL 350
Query: 396 DNYTPTTDE--RYAVNVVDQPGGTKKTVVLREIP 427
+N TT E + V PG T +TVVLR +P
Sbjct: 351 ENGQATTGEGLEWGVLFGFGPGITVETVVLRSVP 384
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDR-VPITIIDTPSSVE 75
++++ G+ G GKS L++ A DT+ + + + ++ ++ V + I DT
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQER 70
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCKLDL 131
R R A +++ Y ++ D + W+ E+ R ++ V ++VG K DL
Sbjct: 71 FRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQ-WIQEIDRYAMENVNKLLVGNKCDL 126
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 5/135 (3%)
Query: 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE 428
+F+ + G GKS LL F ++D+Y T + + + T K + +
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 429 EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAK 488
E + S+ + V+D +D S+ + + E+ Y + V L+V K
Sbjct: 69 ERFRTITSS--YYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMEN---VNKLLVGNK 123
Query: 489 DDLDSFAMAIQDSTR 503
DL S + D R
Sbjct: 124 CDLVSKRVVTSDEGR 138
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPI--TIIDTPSSVE 75
++V+ G+ GTGK++ + F L P F+ +R PI + DT + +E
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT-AGLE 70
Query: 76 DRGKLGEELR-RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD 133
G L + +A ++ + T + W +L R+ +P+++ G K+D++D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPI--TIIDTPSSVE 75
++V+ G+ GTGK++ + F L P F+ +R PI + DT +
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD 133
G +A ++ + T + W +L R+ +P+++ G K+D++D
Sbjct: 72 FGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 12/128 (9%)
Query: 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE------DFYPDRVP 64
P G + ++ G+ G GKS L++ F PV T E + ++
Sbjct: 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRF----QPVHDLTIGVEFGARMVNIDGKQIK 71
Query: 65 ITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIV 124
+ I DT R R A +L Y R ET + L++ WL + R+ VI+
Sbjct: 72 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTS-WLEDARQHSSSNMVIM 130
Query: 125 -VGCKLDL 131
+G K DL
Sbjct: 131 LIGNKSDL 138
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 13 GKTGVRIVVCGEKGTGKSSL--IVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDT 70
G T R+V+ GE+G GKS+L I D+ ++ VL D TII
Sbjct: 3 GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATII-L 60
Query: 71 PSSVEDRGK----LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK--VPVIV 124
E++G+ ++ DA ++ Y+ + ++ S + +LRR +P+I+
Sbjct: 61 LDMWENKGENEWLHDHXMQVGDAYLIVYSITDRASFEKASELRI-QLRRARQTEDIPIIL 119
Query: 125 VGCKLDL 131
VG K DL
Sbjct: 120 VGNKSDL 126
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPE-DFYPDRVPITIIDTPSSV 74
+++++ G +G GK+SL+ DTF A V ++ + ++ + I DT
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 75 EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCKLDLRD 133
R A ++L Y + ET D+L W+ + + + +++VG KLD +
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYASEDAELLLVGNKLDC-E 144
Query: 134 ENQQVSLEQ 142
+++++ +Q
Sbjct: 145 TDREITRQQ 153
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPD--RVPITIIDTPSSVE 75
++++ G+ G GKS L++ A DT+ + + D + + I DT
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCKLDL 131
R R A +++ Y E+ + + WL E+ R + V ++VG K DL
Sbjct: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGIKCDL 125
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLP---PTRLPEDFYPDRVPITIIDTPSSV 74
++++ G+ G GKS L++ A DT+ + + R E + + I DT
Sbjct: 35 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQE 93
Query: 75 EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCKLDL 131
R R A +++ Y E+ + + WL E+ R + V ++VG K DL
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDL 150
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLP---PTRLPEDFYPDRVPITIIDTPSSV 74
++++ G+ G GKS L++ A DT+ + + R E + + I DT
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQE 59
Query: 75 EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCKLDL 131
R R A +++ Y E+ + + WL E+ R + V ++VG K DL
Sbjct: 60 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDL 116
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPD--RVPITIIDTPSSVE 75
++++ G+ G GKS L++ A DT+ + + D + + I DT
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCKLDL 131
R R A +++ Y E+ + + WL E+ R + V ++VG K DL
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDL 123
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 19/131 (14%)
Query: 13 GKTGVRIVVCGEKGTGKSSL--IVTAAADTFPANVPPVLPPTRLPEDFYP-------DRV 63
G T R+V+ GE+G GKS+L I D+ ++ L ED Y +
Sbjct: 3 GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEV------LGEDTYERTLMVDGESA 56
Query: 64 PITIIDTPSSVEDRGKLGEE-LRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK--V 120
I ++D + + L + ++ DA ++ Y+ + ++ S + +LRR +
Sbjct: 57 TIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRI-QLRRARQTEDI 115
Query: 121 PVIVVGCKLDL 131
P+I+VG K DL
Sbjct: 116 PIILVGNKSDL 126
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPD--RVPITIIDTPSSVE 75
++++ G+ G GKS L++ A DT+ + + D + + I DT
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCKLDL 131
R R A +++ Y E+ + + WL E+ R + V ++VG K DL
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDL 123
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 4 ASAANSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRV 63
ASAA P + ++V+ G+ GTGK++ + L P F+ +R
Sbjct: 5 ASAAQGEP--QVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRG 62
Query: 64 PI--TIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP 121
PI + DT + G +A ++ + T + W +L R+ +P
Sbjct: 63 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIP 121
Query: 122 VIVVGCKLDLRD 133
+++ G K+D++D
Sbjct: 122 IVLCGNKVDIKD 133
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPD--RVPITIIDTPSSVE 75
++++ G+ G GKS L++ A DT+ + + D + + I DT
Sbjct: 27 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 86
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCKLDL 131
R R A +++ Y E+ + + WL E+ R + V ++VG K DL
Sbjct: 87 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDL 142
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 20/114 (17%)
Query: 29 KSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEE----- 83
KS+L V TF P + EDFY R I + +PS +E G E
Sbjct: 16 KSALTVQFVTGTFIEKYDPTI------EDFY--RKEIEVDSSPSVLEILDTAGTEQFASM 67
Query: 84 ----LRRADAVVLTYACDRPETLDELSTF--WLPELRRLEVKVPVIVVGCKLDL 131
++ +L Y+ ++ ++ + ++R E KVPVI+VG K+DL
Sbjct: 68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE-KVPVILVGNKVDL 120
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLP---PTRLPEDFYPDRVPITIIDTPSSV 74
++++ G+ G GKS L++ A DT+ + + R E + + I DT
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQE 76
Query: 75 EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCKLDL 131
R R A +++ Y E+ + + WL E+ R + V ++VG K DL
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDL 133
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 4/120 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPD--RVPITIIDTPSSVE 75
++V+ GE GKSSL++ F + L + D V I DT
Sbjct: 10 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 69
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEV-KVPVIVVGCKLDLRDE 134
R A A ++ Y ET T W+ EL+R + + + G K DL ++
Sbjct: 70 YHSLAPMYYRGAQAAIVVYDITNQETFARAKT-WVKELQRQASPSIVIALAGNKADLANK 128
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 19/131 (14%)
Query: 13 GKTGVRIVVCGEKGTGKSSL--IVTAAADTFPANVPPVLPPTRLPEDFYP-------DRV 63
G T R+V+ GE+G GKS+L I D+ ++ L ED Y +
Sbjct: 3 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV------LGEDTYERTLMVDGESA 56
Query: 64 PITIIDTPSSVEDRGKLGEE-LRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK--V 120
I ++D + + L + ++ DA ++ Y+ + ++ S + +LRR +
Sbjct: 57 TIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRI-QLRRARQTEDI 115
Query: 121 PVIVVGCKLDL 131
P+I+VG K DL
Sbjct: 116 PIILVGNKSDL 126
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 27/146 (18%)
Query: 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDR-------VP 64
GG ++++ GE G GKS+L A TF ED Y R V
Sbjct: 8 GGDGVFKVMLLGESGVGKSTL-----AGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVT 62
Query: 65 ITIIDTPSSVEDRGKLGEE-LRRADAVVLTYA-CDR------PETLDELSTFWLPELRRL 116
+ + D + G L + L+ DA ++ ++ DR PETL L R
Sbjct: 63 LIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAG------RP 116
Query: 117 EVKVPVIVVGCKLDLRDENQQVSLEQ 142
+PVI+VG K DL +++VSLE+
Sbjct: 117 HHDLPVILVGNKSDL-ARSREVSLEE 141
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPD--RVPITIIDTPSSVE 75
++++ G+ G GK+ L++ A DT+ + + D + + I DT
Sbjct: 18 KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCKLDL 131
R R A +++ Y E+ + + WL E+ R + V ++VG K DL
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDL 133
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE--DFYPDRVPITIIDTPSSVE 75
++V+ GE GK+SL++ + F L + L + + RV + I DT E
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ-E 66
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRR-LEVKVPVIVVGCKLDLRD 133
LG R ++ +L Y ++ ++ W+ ELR+ L ++ + +VG K+DL
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICLCIVGNKIDLEK 125
Query: 134 ENQQVSLEQ 142
E + VS+++
Sbjct: 126 E-RHVSIQE 133
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 33.1 bits (74), Expect = 0.34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPEDFYPD-RVPITIIDTPSSVE 75
+I++ G GK+S + A D+F PA V V ++ + D R+ + I DT
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEV-KVPVIVVGCKLDLRDE 134
R R A +L Y E+ + + W +++ V++VG K D+ DE
Sbjct: 67 YRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQVLLVGNKCDMEDE 125
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 29 KSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVP-ITIIDTPSSVEDRGKLGEE-LRR 86
KS+L + F + P + + + DR + I+DT E+ G + E+ +R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQ-EEFGAMREQYMRT 76
Query: 87 ADAVVLTYACDRPETLDELSTFWLPELR-RLEVKVPVIVVGCKLDLRDENQQVSLEQ 142
+ +L ++ + +E+ F LR + + P+I++G K DL D +QV+ E+
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL-DHQRQVTQEE 132
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 5/125 (4%)
Query: 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE 428
+F+ V G GKS LL+ F+ + F D+ T + +++ G K + +
Sbjct: 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 429 EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAK 488
E + + AA A+ V+D + ++ T L + + ++ K
Sbjct: 70 ERFRSVTRSYYRGAAG--ALLVYDITSRETYNALTNWLTDARMLASQN---IVIILCGNK 124
Query: 489 DDLDS 493
DLD+
Sbjct: 125 KDLDA 129
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE--DFYPDRVPITIIDTPSSVE 75
++V+ GE GK+SL++ + F L + L + + RV + I DT E
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ-E 66
Query: 76 DRGKLGE-ELRRADAVVLTYACDRPETLDELSTFWLPELRR-LEVKVPVIVVGCKLDLRD 133
LG R ++ +L Y ++ ++ W+ ELR+ L ++ + +VG K+DL
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICLCIVGNKIDLEK 125
Query: 134 ENQQVSLEQ 142
E + VS+++
Sbjct: 126 E-RHVSIQE 133
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 5/125 (4%)
Query: 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE 428
+F+ V G GKS LL+ F+ + F D+ T + +++ G K + +
Sbjct: 11 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 429 EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAK 488
E + + AA A+ V+D + ++ T L + + ++ K
Sbjct: 71 ERFRSVTRSYYRGAAG--ALLVYDITSRETYNALTNWLTDARMLASQN---IVIILCGNK 125
Query: 489 DDLDS 493
DLD+
Sbjct: 126 KDLDA 130
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 6/141 (4%)
Query: 6 AANSGPGGK--TGVRIVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPE-DFYPD 61
+A+SG G + ++I++ G+ G GKS L+V D F P+ + + ++ D
Sbjct: 8 SASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGK 67
Query: 62 RVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP 121
+V + + DT R R A ++L Y T + ++ +
Sbjct: 68 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ 127
Query: 122 VIVVGCKLDLRDENQQVSLEQ 142
+++VG K D+ E + V+ +Q
Sbjct: 128 LLLVGNKSDM--ETRVVTADQ 146
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPD--RVPITIIDTPSSVE 75
++++ G+ G GKS L++ A DT+ + + D + + I DT
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCKLDL 131
R R A +++ Y E+ + WL E+ R + V ++VG K DL
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYASENVNKLLVGNKSDL 126
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLP---PTRLPEDFYPDRVPITIIDTPSSV 74
++++ G+ G GKS L++ A DT+ + + R E + + I DT
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQE 69
Query: 75 EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCKLDL 131
R R A +++ Y E+ + WL E+ R + V ++VG K DL
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYASENVNKLLVGNKSDL 126
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 336 NLIYIGYPGDPSSAIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSVLLNSFLGRPFS 395
+L +I +PG P+ V K +D+KK +A R+V +G + + + + +
Sbjct: 884 SLFWIAHPGGPAILDAVEAKLNLDKKKLEATRHVLS--EYGNMSSACVLFILDEMRKKSL 941
Query: 396 DNYTPTTDER--YAVNVVDQPGGTKKTVVLREIP 427
TT E + V PG T +TVVL IP
Sbjct: 942 KGERATTGEGLDWGVLFGFGPGLTIETVVLHSIP 975
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 14/125 (11%)
Query: 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVP-------ITIID 69
+++ + G+ G GKSS++ D F N+ P + + F VP I D
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGAS-----FMTKTVPCGNELHKFLIWD 78
Query: 70 TPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCK 128
T R + A V+ Y + ++ L W+ EL+ + + + + G K
Sbjct: 79 TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK-WVKELKEHGPENIVMAIAGNK 137
Query: 129 LDLRD 133
DL D
Sbjct: 138 CDLSD 142
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 109 WLPELRRLEVKVPVIVVGCKLDLRDENQQVS---------LEQVMMPIMQQFREIETCIE 159
WL ++ PVI+VG LD+ DE Q+ + L + P ++ + + E
Sbjct: 102 WLFNIKARASSSPVILVGTHLDVSDEKQRKACXSKITKELLNKRGFPAIRDYHFVNATEE 161
Query: 160 CSALKQIQVKCFNSPL 175
AL +++ N L
Sbjct: 162 SDALAKLRKTIINESL 177
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 4/123 (3%)
Query: 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPD--RVPITIID 69
G ++V+ GE GKSSL++ F + L + D V I D
Sbjct: 1 GSICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWD 60
Query: 70 TPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEV-KVPVIVVGCK 128
T R A A ++ Y +T W+ EL+R + + + G K
Sbjct: 61 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-WVKELQRQASPNIVIALAGNK 119
Query: 129 LDL 131
DL
Sbjct: 120 ADL 122
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 7/126 (5%)
Query: 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE 428
+F+ V G GKS LL+ F+ + F D+ T + +++ G K V L+
Sbjct: 8 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGG---KYVKLQIWDT 64
Query: 429 EAVAKLLS-NKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAA 487
+ + S + A+ V+D + ++ T L + + ++
Sbjct: 65 AGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN---IVIILCGN 121
Query: 488 KDDLDS 493
K DLD+
Sbjct: 122 KKDLDA 127
>pdb|3L6A|A Chain A, Crystal Structure Of The C-Terminal Region Of Human P97
Length = 364
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 146 PIMQQFREIETCIECSALKQIQVKCFNS 173
P+MQ+F ++ SAL +QV C+NS
Sbjct: 281 PVMQKFLHDHVDLQVSALYALQVHCYNS 308
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 29 KSSLIVTAAADTFPANVPPVLPPTRLPEDFYP-----DRVP--ITIIDTPSSVEDRGKLG 81
KS+L + F ++ P + ED Y D +P + I+DT + E+ G +
Sbjct: 22 KSALTIQFIQSYFVSDYDPTI------EDSYTKICSVDGIPARLDILDT-AGQEEFGAMR 74
Query: 82 EELRRA-DAVVLTYACDRPETLDELSTFWLPELR-RLEVKVPVIVVGCKLDLRDENQ 136
E+ RA +L +A + ++ +E+ + LR + PV++VG K DL + Q
Sbjct: 75 EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ 131
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 10 GPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT 52
G K+ + V+ GE GKSS+++ DTF N + +
Sbjct: 1 GMEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGAS 43
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 4/117 (3%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPD--RVPITIIDTPSSVE 75
++V+ GE GKSSL++ F + L + D V I DT
Sbjct: 5 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 64
Query: 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEV-KVPVIVVGCKLDL 131
R A A ++ Y +T W+ EL+R + + + G K DL
Sbjct: 65 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-WVKELQRQASPNIVIALAGNKADL 120
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 27/140 (19%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDR 77
++++ GE G GKS+L A TF ED Y R+ + + V D
Sbjct: 4 KVMLVGESGVGKSTL-----AGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDI 58
Query: 78 GKLGEE--------LRRADAVVLTYAC-DR------PETLDELSTFWLPELRRLEVKVPV 122
+ G+ L+ DA ++ ++ DR PETL L R +PV
Sbjct: 59 WEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA------GRPHHDLPV 112
Query: 123 IVVGCKLDLRDENQQVSLEQ 142
I+VG K DL +++VSLE+
Sbjct: 113 ILVGNKSDLA-RSREVSLEE 131
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 103 DELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIE------T 156
D +WL + + K PVIVV K+ DEN ++EQ I ++F IE +
Sbjct: 134 DSNKHYWLRHIEKYGGKSPVIVVMNKI---DENPSYNIEQ--KKINERFPAIENRFHRIS 188
Query: 157 CIECSALKQIQVKCFNSPLQPSEIVG 182
C ++ I ++ L P I G
Sbjct: 189 CKNGDGVESIAKSLKSAVLHPDSIYG 214
>pdb|3D3M|A Chain A, The Crystal Structure Of The C-Terminal Region Of Death
Associated Protein 5(Dap5)
pdb|3D3M|B Chain B, The Crystal Structure Of The C-Terminal Region Of Death
Associated Protein 5(Dap5)
Length = 168
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 136 QQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNS 173
Q+ L P+MQ+F ++ SAL +QV C+NS
Sbjct: 75 QEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNS 112
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 363 QQAERNVFQCFVFGPKKAGKSVLLNSFLGRPF 394
Q A+ ++ Q V G + AGKS +L +F+GR F
Sbjct: 25 QNADLDLPQIAVVGGQSAGKSSVLENFVGRDF 56
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 363 QQAERNVFQCFVFGPKKAGKSVLLNSFLGRPF 394
Q A+ ++ Q V G + AGKS +L +F+GR F
Sbjct: 25 QNADLDLPQIAVVGGQSAGKSSVLENFVGRDF 56
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYP-------DRVPITIIDT 70
R+V+ G+ G GK+SL A F L +L ED Y + + ++DT
Sbjct: 6 RVVLLGDPGVGKTSL-----ASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDT 59
Query: 71 PSSVEDRGKLGEE--LRRADAVVLTYACDRPETLDELSTFWLPELRRLEV--KVPVIVVG 126
+ + +E L+ A V+ Y+ + + S + +LRR VP+I+VG
Sbjct: 60 WEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRI-QLRRTHQADHVPIILVG 118
Query: 127 CKLDLRDENQQVSLEQ 142
K DL ++VS+E+
Sbjct: 119 NKADLA-RCREVSVEE 133
>pdb|1DMS|A Chain A, Structure Of Dmso Reductase
Length = 781
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 202 LAGFLFLHALFIEKGRLETTWT-----VLRKFGYNNDIKLADELIP-YSAFKRAPDQSV- 254
+ G F+H ++ R+ W ++ F + + AD ++P ++++R +++
Sbjct: 431 VGGNPFVH--HQDRNRMVKAWEKLETFIVHDFQWTPTARHADIVLPATTSYERNDIETIG 488
Query: 255 ELTNEAIDFLKGIFE-LFDADDDNSLRPIEVEDL-----FSTAP-ECPWDEAPYKDAAEK 307
+ +N I +K I E L++A D + E L F+ E W ++ Y DAA++
Sbjct: 489 DYSNTGILAMKKIVEPLYEARSDYDIFAAVAERLGKGKEFTEGKDEMGWIKSFYDDAAKQ 548
Query: 308 TALGGLSLDGFLSEWA 323
GG+ + F + WA
Sbjct: 549 GKAGGVEMPAFDAFWA 564
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 299
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 363 QQAERNVFQCFVFGPKKAGKSVLLNSFLGRPF 394
Q A+ ++ Q V G + AGKS +L +F+GR F
Sbjct: 20 QNADLDLPQIAVVGGQSAGKSSVLENFVGRDF 51
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 363 QQAERNVFQCFVFGPKKAGKSVLLNSFLGRPF 394
Q A+ ++ Q V G + AGKS +L +F+GR F
Sbjct: 45 QNADLDLPQIAVVGGQSAGKSSVLENFVGRDF 76
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 363 QQAERNVFQCFVFGPKKAGKSVLLNSFLGRPF 394
Q A+ ++ Q V G + AGKS +L +F+GR F
Sbjct: 22 QNADLDLPQIAVVGGQSAGKSSVLENFVGRDF 53
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 49/122 (40%), Gaps = 13/122 (10%)
Query: 19 IVVCGEKGTGKSSLIVTA-AADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDR 77
+ + G+ GKS+L+ P + P RL R I +DTP +
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 69
Query: 78 GKLGE--------ELRRADAVVLTYACDRPET-LDELSTFWLPELRRLEVKVPVIVVGCK 128
LGE L +AVV P T DEL L+ L KVP+++VG K
Sbjct: 70 DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVAR---ALKPLVGKVPILLVGNK 126
Query: 129 LD 130
LD
Sbjct: 127 LD 128
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 23/141 (16%)
Query: 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTP 71
+TG+++ + G GKSSL+ A + + A V + TR + +P+ ++DT
Sbjct: 222 RTGLKVAIVGRPNVGKSSLL-NAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTA 280
Query: 72 SSVEDRG---KLGEELRR-----ADAVVLTYACDRPETLDELSTFWLPELRRLEVKV--- 120
E K+G E R AD V+LT + +T W + + +V
Sbjct: 281 GIRETSDQVEKIGVERSRQAANTADLVLLTI---------DAATGWTTGDQEIYEQVKHR 331
Query: 121 PVIVVGCKLDLRDENQQVSLE 141
P+I+V K+DL ++ SLE
Sbjct: 332 PLILVMNKIDLVEKQLITSLE 352
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
++ V G GKS L + F D Y PT ++ Y VV
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV 46
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 29.3 bits (64), Expect = 5.2, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
++ V G + GKS L + F D Y PT ++ Y VV
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV 45
>pdb|4DMR|A Chain A, Reduced Dmso Reductase From Rhodobacter Capsulatus With
Bound Dmso Substrate
Length = 823
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 202 LAGFLFLHALFIEKGRLETTWT-----VLRKFGYNNDIKLADELIP-YSAFKRAPDQSV- 254
+ G F+H ++ R+ W V+ F + + AD ++P ++++R +++
Sbjct: 473 VGGNPFVH--HQDRNRMVKAWEKLETFVVHDFQWTPTARHADIVLPATTSYERNDIETIG 530
Query: 255 ELTNEAIDFLKGIFE-LFDADDDNSLRPIEVEDLFSTAP------ECPWDEAPYKDAAEK 307
+ +N I +K I E L++A D + E L A E W ++ Y DAA++
Sbjct: 531 DYSNTGILAMKKIVEPLYEARSDYDIFAAVAERLGKGAEFTEGKDEMGWIKSFYDDAAKQ 590
Query: 308 TALGGLSLDGFLSEWA 323
G+ + F + WA
Sbjct: 591 GKAAGVQMPAFDAFWA 606
>pdb|1E5V|A Chain A, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1E5V|C Chain C, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1H5N|A Chain A, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1H5N|C Chain C, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1DMR|A Chain A, Oxidized Dmso Reductase From Rhodobacter Capsulatus
pdb|2DMR|A Chain A, Dithionite Reduced Dmso Reductase From Rhodobacter
Capsulatus
pdb|3DMR|A Chain A, Structure Of Dmso Reductase From Rhodobacter Capsulatus At
Ph 7.0
Length = 823
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 202 LAGFLFLHALFIEKGRLETTWT-----VLRKFGYNNDIKLADELIP-YSAFKRAPDQSV- 254
+ G F+H ++ R+ W V+ F + + AD ++P ++++R +++
Sbjct: 473 VGGNPFVH--HQDRNRMVKAWEKLETFVVHDFQWTPTARHADIVLPATTSYERNDIETIG 530
Query: 255 ELTNEAIDFLKGIFE-LFDADDDNSLRPIEVEDLFSTAP------ECPWDEAPYKDAAEK 307
+ +N I +K I E L++A D + E L A E W ++ Y DAA++
Sbjct: 531 DYSNTGILAMKKIVEPLYEARSDYDIFAAVAERLGKGAEFTEGKDEMGWIKSFYDDAAKQ 590
Query: 308 TALGGLSLDGFLSEWA 323
G+ + F + WA
Sbjct: 591 GKAAGVQMPAFDAFWA 606
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 374 VFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK 433
V G +GK+ L F F Y T + + + PG T+ + +I + +
Sbjct: 11 VLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG 70
Query: 434 LLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493
+ +K A + + V+D ++ S++ + V E++ + +V K DL+
Sbjct: 71 KMLDKYIYGAQGV-LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129
>pdb|1E60|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E60|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E61|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E61|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
Length = 823
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 202 LAGFLFLHALFIEKGRLETTWT-----VLRKFGYNNDIKLADELIP-YSAFKRAPDQSV- 254
+ G F+H ++ R+ W V+ F + + AD ++P ++++R +++
Sbjct: 473 VGGNPFVH--HQDRNRMVKAWEKLETFVVHDFQWTPTARHADIVLPATTSYERNDIETIG 530
Query: 255 ELTNEAIDFLKGIFE-LFDADDDNSLRPIEVEDLFSTAP------ECPWDEAPYKDAAEK 307
+ +N I +K I E L++A D + E L A E W ++ Y DAA++
Sbjct: 531 DYSNTGILAMKKIVEPLYEARSDYDIFAAVAERLGKGAEFTEGKDEMGWIKSFYDDAAKQ 590
Query: 308 TALGGLSLDGFLSEWA 323
G+ + F + WA
Sbjct: 591 GKAAGVEMPAFDAFWA 606
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
++ V G GKS L + F D Y PT ++ Y VV
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV 45
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVV 411
++ V G GKS L + F D Y PT ++ Y VV
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV 45
>pdb|1AJ3|A Chain A, Solution Structure Of The Spectrin Repeat, Nmr, 20
Structures
Length = 110
Score = 28.9 bits (63), Expect = 7.5, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 449 FVHDSSDESSWKRATELLVEVASYGED 475
F D DE SW + +LLV YG D
Sbjct: 12 FFRDMDDEESWIKEKKLLVSSEDYGRD 38
>pdb|2J68|A Chain A, Bacterial Dynamin-Like Protein Bdlp, Gdp Bound
pdb|2J69|A Chain A, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|B Chain B, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|C Chain C, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|D Chain D, Bacterial Dynamin-like Protein Bdlp
pdb|2W6D|A Chain A, Bacterial Dynamin-Like Protein Lipid Tube Bound
pdb|2W6D|B Chain B, Bacterial Dynamin-Like Protein Lipid Tube Bound
Length = 695
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 344 GDPSSAIRVTRKRRIDR---KKQQAERNVFQCFVFGPKKAGKSVLLNSFLG 391
GD SS +++ +R I+ + ++ VF+ V G K GKS LN+ +G
Sbjct: 42 GDSSSG-KLSLERDIEDITIASKNLQQGVFRLLVLGDMKRGKSTFLNALIG 91
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 28.5 bits (62), Expect = 8.9, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 19 IVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPD--RVPITIIDTPSSVED 76
+++ G+ G GKS L++ A DT+ + + D + + I DT
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 77 RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCKLDL 131
R R A +++ Y E+ + + WL E+ R + V ++VG K DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDL 115
>pdb|2EBL|A Chain A, Solution Structure Of The Zinc Finger, C4-type Domain Of
Human Coup Transcription Factor 1
Length = 89
Score = 28.5 bits (62), Expect = 9.3, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 10 GPGGKTGVRIVVCGEKGTGK 29
G G +G+ VVCG+K +GK
Sbjct: 1 GSSGSSGIECVVCGDKSSGK 20
>pdb|3R0X|A Chain A, Crystal Structure Of Selenomethionine Incorporated Apo
D-Serine Deaminase From Salmonella Tyhimurium
Length = 448
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 442 AAC-DIAVFVHDSSDESSWKRAT--ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAI 498
+AC V VH S+D +WK+A V V Y +D G V AA+ D + F +
Sbjct: 177 SACIGFKVTVHXSADARAWKKAKLRSHGVTVVEYEDDYGVAVEQGRKAAQSDPNCFFIDD 236
Query: 499 QDSTRVF 505
++S +F
Sbjct: 237 ENSRTLF 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,300,882
Number of Sequences: 62578
Number of extensions: 655442
Number of successful extensions: 2290
Number of sequences better than 100.0: 229
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 1961
Number of HSP's gapped (non-prelim): 354
length of query: 514
length of database: 14,973,337
effective HSP length: 103
effective length of query: 411
effective length of database: 8,527,803
effective search space: 3504927033
effective search space used: 3504927033
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)