Query 010254
Match_columns 514
No_of_seqs 425 out of 4299
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 22:50:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1707 Predicted Ras related/ 100.0 2.6E-80 5.7E-85 600.4 39.1 490 11-511 4-559 (625)
2 COG1160 Predicted GTPases [Gen 100.0 3.1E-44 6.8E-49 344.6 26.2 280 17-494 4-304 (444)
3 PRK03003 GTP-binding protein D 100.0 9E-38 1.9E-42 319.7 31.3 276 17-493 39-336 (472)
4 TIGR03594 GTPase_EngA ribosome 100.0 6.8E-36 1.5E-40 305.2 29.6 275 18-492 1-296 (429)
5 PRK00093 GTP-binding protein D 100.0 5.3E-35 1.1E-39 298.8 30.2 277 17-494 2-299 (435)
6 PRK09518 bifunctional cytidyla 100.0 4.8E-35 1E-39 313.1 29.8 280 16-494 275-576 (712)
7 COG0486 ThdF Predicted GTPase 100.0 5.9E-33 1.3E-37 267.7 11.4 232 5-272 206-451 (454)
8 KOG0084 GTPase Rab1/YPT1, smal 100.0 3.3E-30 7.2E-35 218.6 14.3 143 366-513 6-150 (205)
9 KOG0092 GTPase Rab5/YPT51 and 100.0 3.5E-28 7.6E-33 205.5 13.6 165 14-195 3-170 (200)
10 KOG0098 GTPase Rab2, small G p 100.0 6.4E-28 1.4E-32 201.7 14.4 143 367-514 4-147 (216)
11 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.2E-27 2.6E-32 203.1 14.2 151 13-168 6-160 (205)
12 KOG0078 GTP-binding protein SE 100.0 1.8E-27 3.9E-32 205.6 14.5 144 365-513 8-152 (207)
13 KOG0080 GTPase Rab18, small G 100.0 8.9E-28 1.9E-32 195.2 11.8 143 367-513 9-152 (209)
14 KOG0394 Ras-related GTPase [Ge 99.9 1.7E-27 3.6E-32 198.9 12.3 145 367-513 7-156 (210)
15 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.9 6E-27 1.3E-31 197.7 14.9 167 11-194 17-187 (221)
16 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.9 7.2E-27 1.6E-31 197.2 13.7 141 369-513 22-163 (221)
17 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2.2E-27 4.7E-32 238.6 12.5 229 10-272 197-439 (442)
18 KOG0079 GTP-binding protein H- 99.9 4.2E-27 9.2E-32 188.5 11.3 139 369-513 8-147 (198)
19 PRK05291 trmE tRNA modificatio 99.9 1.9E-27 4.1E-32 240.7 10.2 224 9-272 208-446 (449)
20 KOG0087 GTPase Rab11/YPT3, sma 99.9 1.1E-26 2.4E-31 199.2 12.7 143 366-513 11-154 (222)
21 KOG0092 GTPase Rab5/YPT51 and 99.9 1.7E-26 3.7E-31 195.3 13.5 141 368-513 4-145 (200)
22 cd04133 Rop_like Rop subfamily 99.9 8.7E-26 1.9E-30 200.3 16.7 161 17-191 2-172 (176)
23 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 1.1E-25 2.3E-30 201.0 16.7 162 14-189 3-177 (182)
24 cd01893 Miro1 Miro1 subfamily. 99.9 1.8E-25 4E-30 197.8 18.0 163 17-191 1-163 (166)
25 KOG0093 GTPase Rab3, small G p 99.9 6.5E-26 1.4E-30 181.5 12.8 143 367-514 19-162 (193)
26 KOG0078 GTP-binding protein SE 99.9 1.6E-25 3.6E-30 193.4 16.2 152 12-168 8-162 (207)
27 cd01875 RhoG RhoG subfamily. 99.9 1.4E-25 3E-30 202.9 16.2 166 14-192 1-177 (191)
28 KOG0080 GTPase Rab18, small G 99.9 8.5E-26 1.8E-30 183.7 12.1 166 11-189 6-175 (209)
29 cd04131 Rnd Rnd subfamily. Th 99.9 2.1E-25 4.6E-30 198.8 16.0 160 16-189 1-173 (178)
30 KOG0098 GTPase Rab2, small G p 99.9 1.8E-25 3.8E-30 187.1 14.1 149 15-168 5-156 (216)
31 KOG0394 Ras-related GTPase [Ge 99.9 7.8E-26 1.7E-30 189.0 11.8 152 14-168 7-166 (210)
32 cd04121 Rab40 Rab40 subfamily. 99.9 3.7E-25 8E-30 198.5 16.9 160 15-191 5-166 (189)
33 cd01874 Cdc42 Cdc42 subfamily. 99.9 4.4E-25 9.5E-30 196.6 16.2 159 17-189 2-172 (175)
34 cd04120 Rab12 Rab12 subfamily. 99.9 7.2E-25 1.6E-29 198.4 16.9 159 17-191 1-162 (202)
35 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 1.3E-24 2.7E-29 200.0 18.1 164 15-191 12-187 (232)
36 KOG0086 GTPase Rab4, small G p 99.9 2E-25 4.4E-30 179.8 11.1 142 366-512 6-148 (214)
37 cd01871 Rac1_like Rac1-like su 99.9 9.6E-25 2.1E-29 194.3 16.2 159 17-189 2-172 (174)
38 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1.9E-24 4.2E-29 192.0 17.2 160 16-192 2-164 (172)
39 cd04136 Rap_like Rap-like subf 99.9 2E-24 4.3E-29 190.7 16.9 159 16-191 1-162 (163)
40 cd04175 Rap1 Rap1 subgroup. T 99.9 3E-24 6.6E-29 189.7 17.0 159 16-191 1-162 (164)
41 cd04122 Rab14 Rab14 subfamily. 99.9 2.9E-24 6.2E-29 190.2 16.7 159 16-191 2-163 (166)
42 cd01865 Rab3 Rab3 subfamily. 99.9 2.5E-24 5.4E-29 190.3 16.2 159 17-192 2-163 (165)
43 cd01867 Rab8_Rab10_Rab13_like 99.9 3.4E-24 7.4E-29 189.9 16.9 159 16-191 3-164 (167)
44 cd04140 ARHI_like ARHI subfami 99.9 3.9E-24 8.5E-29 189.1 17.1 157 16-189 1-162 (165)
45 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 3.5E-24 7.7E-29 196.1 17.3 161 16-189 1-173 (222)
46 PLN03071 GTP-binding nuclear p 99.9 3.3E-24 7.2E-29 197.7 17.0 161 14-193 11-173 (219)
47 cd04138 H_N_K_Ras_like H-Ras/N 99.9 6.4E-24 1.4E-28 187.1 17.2 158 16-191 1-161 (162)
48 cd04176 Rap2 Rap2 subgroup. T 99.9 6.1E-24 1.3E-28 187.6 17.0 159 16-191 1-162 (163)
49 PTZ00369 Ras-like protein; Pro 99.9 5.8E-24 1.3E-28 192.2 17.0 163 14-193 3-168 (189)
50 cd04124 RabL2 RabL2 subfamily. 99.9 4.7E-24 1E-28 187.7 16.0 156 17-192 1-158 (161)
51 cd04134 Rho3 Rho3 subfamily. 99.9 3.6E-24 7.9E-29 193.4 15.4 162 17-192 1-174 (189)
52 cd04127 Rab27A Rab27a subfamil 99.9 5.9E-24 1.3E-28 190.9 16.3 160 15-191 3-176 (180)
53 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 7.9E-24 1.7E-28 187.4 16.8 159 16-191 2-163 (166)
54 cd04103 Centaurin_gamma Centau 99.9 6.1E-24 1.3E-28 185.7 15.8 154 17-190 1-157 (158)
55 cd04106 Rab23_lke Rab23-like s 99.9 5.4E-24 1.2E-28 187.7 15.3 157 17-190 1-161 (162)
56 cd04144 Ras2 Ras2 subfamily. 99.9 6.8E-24 1.5E-28 191.9 16.1 157 18-191 1-162 (190)
57 cd04128 Spg1 Spg1p. Spg1p (se 99.9 9.1E-24 2E-28 189.1 16.6 161 17-193 1-167 (182)
58 cd00877 Ran Ran (Ras-related n 99.9 6.5E-24 1.4E-28 187.6 15.5 158 17-193 1-160 (166)
59 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 7.4E-24 1.6E-28 187.9 15.8 160 18-192 2-165 (170)
60 cd04126 Rab20 Rab20 subfamily. 99.9 1.1E-23 2.5E-28 192.7 17.4 159 17-191 1-189 (220)
61 KOG0095 GTPase Rab30, small G 99.9 2.8E-24 6E-29 172.5 11.6 141 367-512 5-146 (213)
62 KOG0093 GTPase Rab3, small G p 99.9 3.1E-24 6.8E-29 171.9 11.8 148 16-168 21-171 (193)
63 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 1E-23 2.2E-28 192.6 16.8 160 17-192 1-168 (201)
64 cd04142 RRP22 RRP22 subfamily. 99.9 1.7E-23 3.8E-28 189.6 17.9 160 17-192 1-174 (198)
65 cd04117 Rab15 Rab15 subfamily. 99.9 1.2E-23 2.7E-28 185.0 16.3 156 17-189 1-159 (161)
66 smart00174 RHO Rho (Ras homolo 99.9 7E-24 1.5E-28 189.3 14.9 159 19-191 1-171 (174)
67 smart00173 RAS Ras subfamily o 99.9 1.4E-23 3.1E-28 185.4 16.7 159 17-192 1-162 (164)
68 cd04145 M_R_Ras_like M-Ras/R-R 99.9 1.9E-23 4.1E-28 184.6 17.4 159 16-191 2-163 (164)
69 cd04119 RJL RJL (RabJ-Like) su 99.9 1.4E-23 3E-28 186.1 16.3 158 17-191 1-166 (168)
70 cd04132 Rho4_like Rho4-like su 99.9 1.4E-23 3E-28 189.7 16.4 162 17-192 1-167 (187)
71 cd01873 RhoBTB RhoBTB subfamil 99.9 1.8E-23 3.9E-28 188.7 17.0 157 16-189 2-193 (195)
72 cd04121 Rab40 Rab40 subfamily. 99.9 1.7E-23 3.7E-28 187.7 16.5 140 368-513 5-145 (189)
73 KOG0079 GTP-binding protein H- 99.9 2.8E-24 6.2E-29 172.3 9.9 150 17-171 9-161 (198)
74 cd01868 Rab11_like Rab11-like. 99.9 2E-23 4.4E-28 184.6 16.4 159 16-191 3-164 (165)
75 cd04110 Rab35 Rab35 subfamily. 99.9 2.3E-23 5.1E-28 189.7 16.9 160 15-191 5-166 (199)
76 cd04120 Rab12 Rab12 subfamily. 99.9 1.7E-23 3.7E-28 189.4 15.8 139 370-513 1-141 (202)
77 cd01864 Rab19 Rab19 subfamily. 99.9 2.8E-23 6E-28 183.7 16.1 159 16-190 3-164 (165)
78 cd04112 Rab26 Rab26 subfamily. 99.9 2.8E-23 6E-28 188.1 16.5 161 17-194 1-165 (191)
79 cd04109 Rab28 Rab28 subfamily. 99.9 2.4E-23 5.2E-28 192.0 16.1 159 17-192 1-166 (215)
80 cd01866 Rab2 Rab2 subfamily. 99.9 4.1E-23 8.9E-28 183.1 16.9 158 17-191 5-165 (168)
81 cd04135 Tc10 TC10 subfamily. 99.9 2.4E-23 5.2E-28 185.9 15.3 160 17-190 1-172 (174)
82 cd04116 Rab9 Rab9 subfamily. 99.9 3.5E-23 7.6E-28 184.0 16.2 160 14-190 3-169 (170)
83 KOG0087 GTPase Rab11/YPT3, sma 99.9 1.7E-23 3.6E-28 179.8 13.3 156 11-171 9-168 (222)
84 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 3.3E-23 7.2E-28 185.0 15.9 139 368-513 4-157 (182)
85 KOG1191 Mitochondrial GTPase [ 99.9 6E-24 1.3E-28 204.4 11.1 243 8-273 260-529 (531)
86 cd04113 Rab4 Rab4 subfamily. 99.9 4.7E-23 1E-27 181.5 15.9 157 17-190 1-160 (161)
87 cd04130 Wrch_1 Wrch-1 subfamil 99.9 3E-23 6.6E-28 184.9 14.8 158 17-188 1-170 (173)
88 cd04118 Rab24 Rab24 subfamily. 99.9 5.2E-23 1.1E-27 186.9 16.3 159 17-191 1-165 (193)
89 cd04143 Rhes_like Rhes_like su 99.9 4.6E-23 1E-27 192.6 16.2 159 17-191 1-170 (247)
90 PLN03118 Rab family protein; P 99.9 1E-22 2.2E-27 187.4 18.1 169 8-193 6-178 (211)
91 cd04125 RabA_like RabA-like su 99.9 6.7E-23 1.5E-27 185.2 16.4 159 17-192 1-162 (188)
92 COG1159 Era GTPase [General fu 99.9 9E-23 1.9E-27 186.4 17.1 163 13-196 3-176 (298)
93 KOG0088 GTPase Rab21, small G 99.9 5.6E-24 1.2E-28 172.6 8.1 142 367-513 11-153 (218)
94 cd04131 Rnd Rnd subfamily. Th 99.9 5.8E-23 1.3E-27 183.1 15.3 137 370-513 2-153 (178)
95 cd01860 Rab5_related Rab5-rela 99.9 9.8E-23 2.1E-27 179.8 16.6 159 16-191 1-162 (163)
96 cd04133 Rop_like Rop subfamily 99.9 6E-23 1.3E-27 182.1 15.0 137 370-513 2-151 (176)
97 cd04101 RabL4 RabL4 (Rab-like4 99.9 8.9E-23 1.9E-27 180.3 16.1 158 17-191 1-163 (164)
98 PF00071 Ras: Ras family; Int 99.9 7.5E-23 1.6E-27 180.4 15.4 157 18-191 1-160 (162)
99 cd04177 RSR1 RSR1 subgroup. R 99.9 1.2E-22 2.7E-27 180.1 16.8 160 16-191 1-163 (168)
100 KOG0091 GTPase Rab39, small G 99.9 1.7E-23 3.8E-28 170.8 10.1 142 368-513 7-151 (213)
101 cd01861 Rab6 Rab6 subfamily. 99.9 1.3E-22 2.9E-27 178.6 16.4 157 17-190 1-160 (161)
102 cd04122 Rab14 Rab14 subfamily. 99.9 1.4E-22 3.1E-27 179.3 16.6 140 369-513 2-142 (166)
103 cd01870 RhoA_like RhoA-like su 99.9 1E-22 2.2E-27 181.9 15.8 160 17-190 2-173 (175)
104 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 1E-22 2.2E-27 187.4 16.1 138 369-513 13-165 (232)
105 cd04146 RERG_RasL11_like RERG/ 99.9 9.7E-23 2.1E-27 180.2 15.3 157 18-191 1-163 (165)
106 cd01863 Rab18 Rab18 subfamily. 99.9 1.5E-22 3.3E-27 178.2 16.5 156 17-190 1-160 (161)
107 cd04149 Arf6 Arf6 subfamily. 99.9 6.2E-23 1.3E-27 181.6 13.9 157 14-189 7-167 (168)
108 smart00175 RAB Rab subfamily o 99.9 1.3E-22 2.8E-27 179.2 15.8 159 17-192 1-162 (164)
109 smart00176 RAN Ran (Ras-relate 99.9 8.4E-23 1.8E-27 184.7 14.6 152 22-192 1-154 (200)
110 cd04111 Rab39 Rab39 subfamily. 99.9 1.7E-22 3.7E-27 185.3 16.9 160 16-192 2-166 (211)
111 PLN03110 Rab GTPase; Provision 99.9 2E-22 4.4E-27 185.6 17.3 163 13-192 9-174 (216)
112 KOG0091 GTPase Rab39, small G 99.9 1.7E-22 3.7E-27 165.0 14.5 150 14-168 6-161 (213)
113 cd01892 Miro2 Miro2 subfamily. 99.9 1.8E-22 3.9E-27 178.9 15.8 161 14-191 2-165 (169)
114 cd04115 Rab33B_Rab33A Rab33B/R 99.9 2E-22 4.3E-27 179.1 16.0 159 16-191 2-168 (170)
115 cd00157 Rho Rho (Ras homology) 99.9 1.2E-22 2.6E-27 180.7 14.7 160 17-189 1-170 (171)
116 smart00177 ARF ARF-like small 99.9 2.8E-22 6.1E-27 178.7 16.7 156 14-191 11-173 (175)
117 cd04148 RGK RGK subfamily. Th 99.9 2.7E-22 5.8E-27 185.3 16.9 157 17-192 1-163 (221)
118 cd01867 Rab8_Rab10_Rab13_like 99.9 3.1E-22 6.6E-27 177.4 16.6 141 368-513 2-143 (167)
119 KOG0086 GTPase Rab4, small G p 99.9 4.6E-23 9.9E-28 166.3 10.0 152 16-172 9-164 (214)
120 PLN00223 ADP-ribosylation fact 99.9 3.2E-22 7E-27 179.0 16.6 157 14-192 15-178 (181)
121 cd01865 Rab3 Rab3 subfamily. 99.9 4.4E-22 9.5E-27 176.0 16.6 139 370-513 2-141 (165)
122 cd04139 RalA_RalB RalA/RalB su 99.9 5.2E-22 1.1E-26 175.3 16.7 158 17-191 1-161 (164)
123 cd04150 Arf1_5_like Arf1-Arf5- 99.9 4.6E-22 9.9E-27 174.5 16.1 155 17-189 1-158 (159)
124 cd04117 Rab15 Rab15 subfamily. 99.9 4.7E-22 1E-26 174.9 15.9 139 370-513 1-140 (161)
125 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 5.1E-22 1.1E-26 181.3 16.2 142 370-513 1-146 (201)
126 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 4.8E-22 1E-26 176.6 15.6 139 370-513 3-142 (172)
127 cd01862 Rab7 Rab7 subfamily. 99.9 5.7E-22 1.2E-26 176.5 16.1 160 17-192 1-167 (172)
128 PF02421 FeoB_N: Ferrous iron 99.9 9.7E-23 2.1E-27 173.5 10.4 145 17-187 1-156 (156)
129 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 7.3E-22 1.6E-26 174.8 16.5 140 369-513 2-142 (166)
130 cd04123 Rab21 Rab21 subfamily. 99.9 7.3E-22 1.6E-26 173.9 16.3 158 17-191 1-161 (162)
131 PTZ00133 ADP-ribosylation fact 99.9 8.1E-22 1.8E-26 176.7 16.8 157 14-192 15-178 (182)
132 cd04154 Arl2 Arl2 subfamily. 99.9 6.8E-22 1.5E-26 176.2 16.2 160 10-189 8-172 (173)
133 PLN03108 Rab family protein; P 99.9 9.5E-22 2.1E-26 180.4 17.1 160 15-191 5-167 (210)
134 cd04129 Rho2 Rho2 subfamily. 99.9 7.8E-22 1.7E-26 177.9 16.2 162 16-191 1-172 (187)
135 cd01868 Rab11_like Rab11-like. 99.9 9.6E-22 2.1E-26 173.9 16.4 140 369-513 3-143 (165)
136 cd04109 Rab28 Rab28 subfamily. 99.9 7.6E-22 1.6E-26 182.0 16.3 142 370-513 1-144 (215)
137 cd04127 Rab27A Rab27a subfamil 99.9 1.2E-21 2.6E-26 175.9 17.0 142 368-513 3-155 (180)
138 cd01875 RhoG RhoG subfamily. 99.9 7.3E-22 1.6E-26 178.5 15.7 138 369-513 3-155 (191)
139 cd01892 Miro2 Miro2 subfamily. 99.9 7.3E-22 1.6E-26 175.0 15.4 138 367-511 2-141 (169)
140 cd04158 ARD1 ARD1 subfamily. 99.9 1E-21 2.2E-26 174.3 16.3 157 18-194 1-163 (169)
141 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 7.2E-22 1.6E-26 174.1 15.1 158 19-188 2-162 (164)
142 TIGR00436 era GTP-binding prot 99.9 1.3E-21 2.7E-26 186.5 17.3 156 18-196 2-168 (270)
143 cd04128 Spg1 Spg1p. Spg1p (se 99.9 9.2E-22 2E-26 176.1 15.4 138 370-513 1-144 (182)
144 cd04147 Ras_dva Ras-dva subfam 99.9 1.1E-21 2.4E-26 178.6 16.2 161 18-193 1-164 (198)
145 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 1.3E-21 2.7E-26 179.3 16.6 137 370-513 2-153 (222)
146 KOG0097 GTPase Rab14, small G 99.9 3.9E-22 8.4E-27 158.7 11.3 142 367-513 9-151 (215)
147 cd01866 Rab2 Rab2 subfamily. 99.9 1.8E-21 4E-26 172.5 16.7 141 368-513 3-144 (168)
148 cd04116 Rab9 Rab9 subfamily. 99.9 2.1E-21 4.5E-26 172.6 17.0 144 368-513 4-149 (170)
149 cd04136 Rap_like Rap-like subf 99.9 1.3E-21 2.7E-26 172.7 15.1 139 370-513 2-141 (163)
150 cd04110 Rab35 Rab35 subfamily. 99.9 2E-21 4.2E-26 177.0 16.7 140 368-513 5-145 (199)
151 KOG0088 GTPase Rab21, small G 99.9 2.2E-22 4.8E-27 163.3 9.0 166 10-192 7-175 (218)
152 PLN03071 GTP-binding nuclear p 99.9 1.7E-21 3.7E-26 179.6 16.1 140 367-513 11-150 (219)
153 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 2.2E-21 4.8E-26 172.0 16.2 139 371-513 2-143 (170)
154 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1.4E-21 3E-26 175.6 15.0 160 15-192 2-170 (183)
155 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.9E-21 4.2E-26 175.5 15.9 141 370-512 1-167 (202)
156 cd04106 Rab23_lke Rab23-like s 99.9 2E-21 4.4E-26 171.2 15.7 138 370-513 1-141 (162)
157 cd04151 Arl1 Arl1 subfamily. 99.9 2.2E-21 4.9E-26 170.1 15.8 150 18-189 1-157 (158)
158 cd04157 Arl6 Arl6 subfamily. 99.9 1.1E-21 2.3E-26 173.0 13.8 156 18-189 1-161 (162)
159 cd04119 RJL RJL (RabJ-Like) su 99.9 2.3E-21 4.9E-26 171.9 15.9 142 370-513 1-145 (168)
160 KOG0095 GTPase Rab30, small G 99.9 1.2E-21 2.5E-26 157.5 12.2 157 16-189 7-166 (213)
161 cd04111 Rab39 Rab39 subfamily. 99.9 3E-21 6.4E-26 177.1 16.7 141 369-513 2-144 (211)
162 PLN00023 GTP-binding protein; 99.9 2.7E-21 5.8E-26 182.2 16.3 144 366-511 18-190 (334)
163 cd00154 Rab Rab family. Rab G 99.9 2.4E-21 5.1E-26 169.8 15.0 155 17-188 1-158 (159)
164 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 2.6E-21 5.7E-26 172.4 15.3 157 15-189 14-173 (174)
165 cd01874 Cdc42 Cdc42 subfamily. 99.9 2.9E-21 6.4E-26 172.0 15.5 137 370-513 2-153 (175)
166 cd04115 Rab33B_Rab33A Rab33B/R 99.9 4E-21 8.7E-26 170.7 16.4 141 369-513 2-144 (170)
167 cd04114 Rab30 Rab30 subfamily. 99.9 3.9E-21 8.4E-26 170.7 16.3 159 15-190 6-167 (169)
168 cd04125 RabA_like RabA-like su 99.9 3.6E-21 7.9E-26 173.9 16.2 139 370-513 1-140 (188)
169 cd04175 Rap1 Rap1 subgroup. T 99.9 2.5E-21 5.3E-26 171.0 14.8 139 370-513 2-141 (164)
170 cd01864 Rab19 Rab19 subfamily. 99.9 5.2E-21 1.1E-25 169.2 16.8 139 368-511 2-141 (165)
171 PLN03110 Rab GTPase; Provision 99.9 3.7E-21 8.1E-26 177.2 16.3 141 368-513 11-152 (216)
172 PF00071 Ras: Ras family; Int 99.9 2E-21 4.4E-26 171.2 13.7 138 371-513 1-139 (162)
173 cd04137 RheB Rheb (Ras Homolog 99.9 5.1E-21 1.1E-25 171.8 16.4 160 17-192 2-163 (180)
174 cd04138 H_N_K_Ras_like H-Ras/N 99.9 4.7E-21 1E-25 168.7 15.4 139 370-513 2-140 (162)
175 cd04113 Rab4 Rab4 subfamily. 99.9 5.3E-21 1.1E-25 168.4 15.7 139 370-513 1-140 (161)
176 cd04176 Rap2 Rap2 subgroup. T 99.9 3.7E-21 8E-26 169.7 14.7 139 370-513 2-141 (163)
177 KOG0393 Ras-related small GTPa 99.9 4.4E-22 9.5E-27 173.3 8.4 151 14-166 2-165 (198)
178 cd04144 Ras2 Ras2 subfamily. 99.9 3.7E-21 8.1E-26 174.0 14.7 140 371-513 1-141 (190)
179 cd00876 Ras Ras family. The R 99.9 6.1E-21 1.3E-25 167.7 15.5 156 18-190 1-159 (160)
180 PTZ00369 Ras-like protein; Pro 99.9 5.9E-21 1.3E-25 172.5 15.5 141 368-513 4-145 (189)
181 cd04140 ARHI_like ARHI subfami 99.9 8.1E-21 1.8E-25 167.9 15.8 141 370-513 2-143 (165)
182 cd04156 ARLTS1 ARLTS1 subfamil 99.9 3.7E-21 8E-26 169.2 13.5 155 18-189 1-159 (160)
183 PLN03108 Rab family protein; P 99.9 1E-20 2.3E-25 173.5 16.9 141 368-513 5-146 (210)
184 COG1160 Predicted GTPases [Gen 99.9 5.7E-21 1.2E-25 184.5 15.6 160 15-193 177-352 (444)
185 cd01871 Rac1_like Rac1-like su 99.9 9.8E-21 2.1E-25 168.4 16.1 137 370-513 2-153 (174)
186 smart00178 SAR Sar1p-like memb 99.9 1.1E-20 2.3E-25 169.9 16.4 159 14-190 15-183 (184)
187 KOG0081 GTPase Rab27, small G 99.9 2.9E-22 6.3E-27 162.8 5.4 169 17-198 10-191 (219)
188 cd04160 Arfrp1 Arfrp1 subfamil 99.9 4.6E-21 1E-25 169.8 13.7 155 18-189 1-166 (167)
189 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.7E-20 3.6E-25 169.5 17.4 146 17-166 1-176 (202)
190 cd04112 Rab26 Rab26 subfamily. 99.9 1.1E-20 2.3E-25 171.2 16.0 139 370-513 1-141 (191)
191 KOG0083 GTPase Rab26/Rab37, sm 99.9 1.7E-22 3.7E-27 159.1 3.7 135 374-513 2-138 (192)
192 cd00877 Ran Ran (Ras-related n 99.9 8.3E-21 1.8E-25 167.7 14.6 137 370-513 1-137 (166)
193 cd04142 RRP22 RRP22 subfamily. 99.9 6.7E-21 1.4E-25 172.7 14.2 144 370-513 1-152 (198)
194 cd01861 Rab6 Rab6 subfamily. 99.9 1.4E-20 3.1E-25 165.6 15.9 139 370-513 1-140 (161)
195 cd04124 RabL2 RabL2 subfamily. 99.9 1.2E-20 2.6E-25 166.0 15.4 136 370-513 1-136 (161)
196 PRK15494 era GTPase Era; Provi 99.9 1.1E-20 2.4E-25 184.9 16.6 159 15-196 51-220 (339)
197 cd04171 SelB SelB subfamily. 99.9 1.2E-20 2.7E-25 166.5 15.3 158 17-189 1-163 (164)
198 cd01891 TypA_BipA TypA (tyrosi 99.9 2.8E-20 6.2E-25 168.8 18.0 169 18-193 4-193 (194)
199 cd00879 Sar1 Sar1 subfamily. 99.9 1.7E-20 3.6E-25 170.0 16.5 157 14-190 17-189 (190)
200 cd01863 Rab18 Rab18 subfamily. 99.9 1.9E-20 4E-25 164.9 16.1 140 370-513 1-140 (161)
201 cd01890 LepA LepA subfamily. 99.9 1.9E-20 4.1E-25 167.9 16.3 156 18-193 2-178 (179)
202 cd04161 Arl2l1_Arl13_like Arl2 99.9 7.7E-21 1.7E-25 168.1 13.4 162 18-189 1-166 (167)
203 cd04132 Rho4_like Rho4-like su 99.9 1.8E-20 4E-25 169.2 15.9 137 370-513 1-145 (187)
204 smart00173 RAS Ras subfamily o 99.8 1.8E-20 3.8E-25 165.5 14.9 139 370-513 1-140 (164)
205 KOG0081 GTPase Rab27, small G 99.8 3.8E-22 8.3E-27 162.1 3.8 143 368-514 8-160 (219)
206 cd01898 Obg Obg subfamily. Th 99.8 2.7E-20 5.8E-25 165.4 16.1 153 18-190 2-169 (170)
207 cd00878 Arf_Arl Arf (ADP-ribos 99.8 1.7E-20 3.6E-25 164.6 14.6 154 18-189 1-157 (158)
208 cd04145 M_R_Ras_like M-Ras/R-R 99.8 2.2E-20 4.8E-25 164.9 15.4 140 369-513 2-142 (164)
209 cd01897 NOG NOG1 is a nucleola 99.8 3.5E-20 7.6E-25 164.3 16.7 152 18-191 2-167 (168)
210 cd04134 Rho3 Rho3 subfamily. 99.8 1.9E-20 4.1E-25 169.1 15.1 136 371-513 2-152 (189)
211 smart00176 RAN Ran (Ras-relate 99.8 2.2E-20 4.7E-25 168.9 14.4 132 375-513 1-132 (200)
212 smart00175 RAB Rab subfamily o 99.8 4E-20 8.6E-25 163.3 15.7 139 370-513 1-140 (164)
213 PTZ00132 GTP-binding nuclear p 99.8 5.7E-20 1.2E-24 169.7 17.3 163 11-192 4-168 (215)
214 cd01860 Rab5_related Rab5-rela 99.8 5.3E-20 1.2E-24 162.3 16.4 139 370-513 2-141 (163)
215 cd04101 RabL4 RabL4 (Rab-like4 99.8 5.1E-20 1.1E-24 162.6 16.2 138 370-513 1-142 (164)
216 KOG0395 Ras-related GTPase [Ge 99.8 2.7E-20 5.8E-25 166.7 14.5 160 15-191 2-164 (196)
217 KOG0097 GTPase Rab14, small G 99.8 2.2E-20 4.7E-25 148.7 12.1 149 15-168 10-161 (215)
218 cd04126 Rab20 Rab20 subfamily. 99.8 3.1E-20 6.7E-25 170.1 15.0 130 370-509 1-150 (220)
219 cd04118 Rab24 Rab24 subfamily. 99.8 4.4E-20 9.6E-25 167.6 15.7 138 370-513 1-144 (193)
220 KOG0395 Ras-related GTPase [Ge 99.8 2.5E-20 5.4E-25 167.0 12.9 140 369-513 3-143 (196)
221 smart00174 RHO Rho (Ras homolo 99.8 4.6E-20 9.9E-25 164.6 13.8 135 372-513 1-150 (174)
222 cd01873 RhoBTB RhoBTB subfamil 99.8 9.5E-20 2.1E-24 164.5 15.7 137 369-513 2-174 (195)
223 TIGR02528 EutP ethanolamine ut 99.8 3.1E-20 6.7E-25 159.8 11.9 136 18-188 2-141 (142)
224 TIGR03156 GTP_HflX GTP-binding 99.8 5.8E-20 1.3E-24 179.9 15.1 150 15-190 188-350 (351)
225 cd04155 Arl3 Arl3 subfamily. 99.8 1.1E-19 2.3E-24 162.1 15.3 155 13-189 11-172 (173)
226 PRK12299 obgE GTPase CgtA; Rev 99.8 1.5E-19 3.2E-24 175.4 17.0 157 17-193 159-329 (335)
227 cd04130 Wrch_1 Wrch-1 subfamil 99.8 1.1E-19 2.4E-24 161.9 14.9 137 370-513 1-152 (173)
228 cd04159 Arl10_like Arl10-like 99.8 9.7E-20 2.1E-24 159.6 14.3 154 19-189 2-158 (159)
229 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.4E-19 3.1E-24 160.4 15.5 154 18-191 2-165 (168)
230 PRK03003 GTP-binding protein D 99.8 8.5E-20 1.8E-24 187.3 16.0 158 15-193 210-383 (472)
231 cd04103 Centaurin_gamma Centau 99.8 1.2E-19 2.6E-24 158.6 14.4 133 370-513 1-137 (158)
232 cd04177 RSR1 RSR1 subgroup. R 99.8 1.4E-19 3.1E-24 160.4 14.9 139 370-513 2-142 (168)
233 cd04143 Rhes_like Rhes_like su 99.8 1.3E-19 2.8E-24 169.3 15.3 141 370-513 1-149 (247)
234 cd04123 Rab21 Rab21 subfamily. 99.8 2.4E-19 5.3E-24 157.8 16.1 139 370-513 1-140 (162)
235 cd04148 RGK RGK subfamily. Th 99.8 1.6E-19 3.6E-24 166.7 15.6 138 370-513 1-141 (221)
236 PRK00089 era GTPase Era; Revie 99.8 2.6E-19 5.6E-24 173.2 17.6 160 15-195 4-174 (292)
237 PLN03118 Rab family protein; P 99.8 2.3E-19 4.9E-24 165.1 16.1 141 368-513 13-155 (211)
238 cd04146 RERG_RasL11_like RERG/ 99.8 8E-20 1.7E-24 161.5 12.4 139 371-513 1-141 (165)
239 cd00881 GTP_translation_factor 99.8 2.5E-19 5.4E-24 162.0 15.7 160 18-193 1-188 (189)
240 KOG0083 GTPase Rab26/Rab37, sm 99.8 6.7E-21 1.4E-25 150.2 4.4 143 21-168 2-148 (192)
241 cd01894 EngA1 EngA1 subfamily. 99.8 2E-19 4.4E-24 157.4 14.4 145 20-190 1-156 (157)
242 cd01862 Rab7 Rab7 subfamily. 99.8 4.9E-19 1.1E-23 157.6 16.2 141 370-512 1-144 (172)
243 cd01878 HflX HflX subfamily. 99.8 3E-19 6.5E-24 163.6 15.1 151 15-190 40-203 (204)
244 TIGR02729 Obg_CgtA Obg family 99.8 4.7E-19 1E-23 171.9 16.8 154 17-191 158-328 (329)
245 cd01889 SelB_euk SelB subfamil 99.8 3.6E-19 7.7E-24 161.3 14.9 161 17-193 1-187 (192)
246 KOG4252 GTP-binding protein [S 99.8 1.2E-20 2.6E-25 156.6 4.1 140 368-513 19-159 (246)
247 PLN00023 GTP-binding protein; 99.8 3.6E-19 7.9E-24 167.8 14.7 143 9-152 14-188 (334)
248 cd01895 EngA2 EngA2 subfamily. 99.8 1.1E-18 2.4E-23 155.3 17.2 155 16-189 2-172 (174)
249 TIGR03594 GTPase_EngA ribosome 99.8 4.7E-19 1E-23 181.2 16.4 159 14-192 170-344 (429)
250 cd01879 FeoB Ferrous iron tran 99.8 5.5E-19 1.2E-23 154.9 14.4 144 21-190 1-155 (158)
251 PRK15467 ethanolamine utilizat 99.8 3.7E-19 7.9E-24 155.3 13.1 142 18-193 3-148 (158)
252 cd04135 Tc10 TC10 subfamily. 99.8 5.6E-19 1.2E-23 157.6 14.6 137 370-513 1-152 (174)
253 PRK12298 obgE GTPase CgtA; Rev 99.8 7.3E-19 1.6E-23 174.0 16.7 158 18-194 161-335 (390)
254 cd04164 trmE TrmE (MnmE, ThdF, 99.8 8.7E-19 1.9E-23 153.3 15.2 145 16-191 1-156 (157)
255 cd00154 Rab Rab family. Rab G 99.8 1E-18 2.3E-23 153.0 15.6 139 370-513 1-140 (159)
256 cd04114 Rab30 Rab30 subfamily. 99.8 1.6E-18 3.4E-23 153.9 16.2 140 368-512 6-146 (169)
257 TIGR03598 GTPase_YsxC ribosome 99.8 6.2E-19 1.3E-23 157.8 13.6 149 10-167 12-177 (179)
258 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 3.5E-19 7.6E-24 156.9 11.7 133 371-513 1-138 (164)
259 PF00009 GTP_EFTU: Elongation 99.8 1.8E-18 3.8E-23 156.1 15.8 162 15-192 2-187 (188)
260 PRK00454 engB GTP-binding prot 99.8 1.9E-18 4.2E-23 157.3 15.9 166 8-193 16-195 (196)
261 PRK12297 obgE GTPase CgtA; Rev 99.8 2E-18 4.3E-23 171.6 17.1 153 18-194 160-329 (424)
262 TIGR00231 small_GTP small GTP- 99.8 2.6E-18 5.6E-23 150.4 15.9 156 16-188 1-160 (161)
263 PRK00093 GTP-binding protein D 99.8 1.5E-18 3.2E-23 177.6 16.4 157 14-191 171-343 (435)
264 cd04139 RalA_RalB RalA/RalB su 99.8 2.8E-18 6E-23 151.4 15.9 139 370-513 1-140 (164)
265 cd04163 Era Era subfamily. Er 99.8 4E-18 8.7E-23 150.6 16.4 155 15-190 2-167 (168)
266 PRK11058 GTPase HflX; Provisio 99.8 2.9E-18 6.2E-23 171.8 17.1 153 17-193 198-363 (426)
267 PRK12296 obgE GTPase CgtA; Rev 99.8 2.5E-18 5.4E-23 172.7 16.1 157 16-193 159-341 (500)
268 PF00025 Arf: ADP-ribosylation 99.8 8.6E-19 1.9E-23 155.9 11.2 161 14-191 12-175 (175)
269 cd04149 Arf6 Arf6 subfamily. 99.8 3.3E-18 7.2E-23 151.3 14.7 127 368-504 8-134 (168)
270 cd04137 RheB Rheb (Ras Homolog 99.8 4.9E-18 1.1E-22 152.4 15.2 139 370-513 2-141 (180)
271 cd01881 Obg_like The Obg-like 99.8 3.3E-18 7.1E-23 152.9 14.0 150 21-190 1-175 (176)
272 cd04150 Arf1_5_like Arf1-Arf5- 99.8 6.8E-18 1.5E-22 148.0 15.5 115 370-493 1-115 (159)
273 cd01870 RhoA_like RhoA-like su 99.8 8E-18 1.7E-22 150.3 16.2 134 370-510 2-149 (175)
274 cd00876 Ras Ras family. The R 99.8 6.8E-18 1.5E-22 148.2 15.4 138 371-513 1-139 (160)
275 PTZ00132 GTP-binding nuclear p 99.8 7.1E-18 1.5E-22 155.7 16.2 140 367-513 7-146 (215)
276 smart00177 ARF ARF-like small 99.8 7.8E-18 1.7E-22 150.0 15.6 116 369-493 13-128 (175)
277 KOG4252 GTP-binding protein [S 99.8 4.2E-19 9.1E-24 147.5 6.4 150 14-168 18-169 (246)
278 PF08477 Miro: Miro-like prote 99.8 1.8E-18 4E-23 143.8 10.5 113 18-130 1-119 (119)
279 PRK09518 bifunctional cytidyla 99.8 3.8E-18 8.2E-23 183.3 15.6 158 15-193 449-622 (712)
280 PLN00223 ADP-ribosylation fact 99.8 9E-18 2E-22 150.2 15.5 130 368-510 16-145 (181)
281 COG1100 GTPase SAR1 and relate 99.8 8.8E-18 1.9E-22 155.8 16.0 165 14-191 3-184 (219)
282 PRK04213 GTP-binding protein; 99.8 3.9E-18 8.4E-23 155.9 13.3 155 15-194 8-194 (201)
283 cd00157 Rho Rho (Ras homology) 99.8 6.2E-18 1.3E-22 150.3 14.1 137 370-513 1-151 (171)
284 PTZ00133 ADP-ribosylation fact 99.8 1.4E-17 3E-22 149.3 15.8 117 368-493 16-132 (182)
285 KOG1423 Ras-like GTPase ERA [C 99.8 8.7E-18 1.9E-22 152.4 14.1 167 14-197 70-276 (379)
286 cd04147 Ras_dva Ras-dva subfam 99.8 1E-17 2.2E-22 152.5 14.9 118 371-493 1-118 (198)
287 COG0218 Predicted GTPase [Gene 99.8 1.7E-17 3.6E-22 144.0 15.1 168 5-192 13-197 (200)
288 KOG0393 Ras-related small GTPa 99.8 2.5E-18 5.4E-23 149.9 10.0 135 369-510 4-153 (198)
289 PRK09554 feoB ferrous iron tra 99.8 9.6E-18 2.1E-22 179.0 16.3 153 14-192 1-168 (772)
290 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 2E-17 4.3E-22 148.6 15.7 120 369-493 3-123 (183)
291 PF08477 Miro: Miro-like prote 99.8 3.9E-18 8.5E-23 141.8 10.2 114 371-490 1-119 (119)
292 KOG0073 GTP-binding ADP-ribosy 99.8 1.5E-17 3.3E-22 136.7 13.2 148 14-166 14-164 (185)
293 cd01888 eIF2_gamma eIF2-gamma 99.8 2E-17 4.3E-22 150.9 15.4 164 17-195 1-202 (203)
294 cd01893 Miro1 Miro1 subfamily. 99.8 2.4E-17 5.2E-22 145.7 15.5 118 370-495 1-119 (166)
295 cd04154 Arl2 Arl2 subfamily. 99.8 2.1E-17 4.6E-22 147.2 14.8 128 368-505 13-140 (173)
296 cd04158 ARD1 ARD1 subfamily. 99.7 2.1E-17 4.6E-22 146.5 13.9 126 371-506 1-126 (169)
297 cd04161 Arl2l1_Arl13_like Arl2 99.7 3.1E-17 6.7E-22 145.0 14.5 116 371-495 1-116 (167)
298 TIGR00475 selB selenocysteine- 99.7 2.5E-17 5.3E-22 171.9 15.6 160 17-192 1-166 (581)
299 cd04157 Arl6 Arl6 subfamily. 99.7 4.8E-17 1E-21 143.2 15.2 117 371-493 1-118 (162)
300 TIGR00487 IF-2 translation ini 99.7 3.2E-17 7E-22 170.1 16.3 158 12-189 83-247 (587)
301 cd04129 Rho2 Rho2 subfamily. 99.7 4.1E-17 9E-22 147.1 15.0 137 370-513 2-151 (187)
302 cd01884 EF_Tu EF-Tu subfamily. 99.7 5.8E-17 1.3E-21 145.8 15.7 171 16-192 2-193 (195)
303 CHL00189 infB translation init 99.7 3.9E-17 8.4E-22 171.6 16.1 160 12-191 240-409 (742)
304 PRK05306 infB translation init 99.7 4.1E-17 8.9E-22 173.1 16.2 159 11-189 285-449 (787)
305 cd04156 ARLTS1 ARLTS1 subfamil 99.7 7E-17 1.5E-21 141.9 14.8 115 371-493 1-115 (160)
306 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 1.1E-16 2.3E-21 142.7 15.9 116 369-493 15-130 (174)
307 cd04166 CysN_ATPS CysN_ATPS su 99.7 2.5E-17 5.4E-22 150.8 12.1 146 18-168 1-182 (208)
308 TIGR01393 lepA GTP-binding pro 99.7 7.9E-17 1.7E-21 168.2 17.3 159 17-195 4-183 (595)
309 PF08355 EF_assoc_1: EF hand a 99.7 2.6E-18 5.7E-23 125.5 4.3 70 295-364 1-75 (76)
310 KOG0075 GTP-binding ADP-ribosy 99.7 1.4E-17 3E-22 134.0 8.1 157 14-191 18-181 (186)
311 cd00882 Ras_like_GTPase Ras-li 99.7 7.3E-17 1.6E-21 139.9 13.5 153 21-188 1-156 (157)
312 COG0370 FeoB Fe2+ transport sy 99.7 8.9E-17 1.9E-21 162.7 13.5 155 15-195 2-167 (653)
313 smart00178 SAR Sar1p-like memb 99.7 3.7E-16 8E-21 140.4 16.0 116 369-493 17-132 (184)
314 PRK12317 elongation factor 1-a 99.7 1.2E-16 2.6E-21 162.4 14.0 154 14-168 4-193 (425)
315 PTZ00099 rab6; Provisional 99.7 2.6E-16 5.6E-21 139.6 13.5 122 56-194 22-144 (176)
316 cd04104 p47_IIGP_like p47 (47- 99.7 4.3E-16 9.4E-21 141.3 15.1 161 16-194 1-186 (197)
317 PRK10512 selenocysteinyl-tRNA- 99.7 3.3E-16 7.1E-21 163.9 16.3 161 17-193 1-167 (614)
318 cd04151 Arl1 Arl1 subfamily. 99.7 6.2E-16 1.3E-20 135.5 15.5 114 371-493 1-114 (158)
319 cd04165 GTPBP1_like GTPBP1-lik 99.7 4.8E-16 1E-20 143.0 15.1 153 18-189 1-220 (224)
320 TIGR00491 aIF-2 translation in 99.7 4.2E-16 9.2E-21 161.4 16.4 113 17-133 5-135 (590)
321 cd01896 DRG The developmentall 99.7 5.5E-16 1.2E-20 143.9 15.3 148 18-191 2-225 (233)
322 cd00880 Era_like Era (E. coli 99.7 5.4E-16 1.2E-20 135.8 14.5 151 21-190 1-162 (163)
323 cd04105 SR_beta Signal recogni 99.7 3.8E-16 8.2E-21 142.2 13.5 116 18-134 2-124 (203)
324 cd00878 Arf_Arl Arf (ADP-ribos 99.7 8.7E-16 1.9E-20 134.6 15.1 115 371-494 1-115 (158)
325 cd00879 Sar1 Sar1 subfamily. 99.7 1.1E-15 2.3E-20 138.4 15.8 128 369-506 19-146 (190)
326 TIGR02528 EutP ethanolamine ut 99.7 1.2E-16 2.7E-21 137.3 9.0 116 371-513 2-123 (142)
327 cd01878 HflX HflX subfamily. 99.7 7.4E-16 1.6E-20 141.1 14.7 122 366-494 38-168 (204)
328 cd01876 YihA_EngB The YihA (En 99.7 1E-15 2.2E-20 135.5 15.1 155 18-190 1-169 (170)
329 cd04168 TetM_like Tet(M)-like 99.7 1.2E-15 2.7E-20 141.7 16.2 112 18-133 1-130 (237)
330 COG1100 GTPase SAR1 and relate 99.7 7.2E-16 1.6E-20 142.9 14.6 121 370-495 6-127 (219)
331 TIGR00437 feoB ferrous iron tr 99.7 2.7E-16 5.8E-21 164.3 12.8 143 23-191 1-154 (591)
332 KOG0070 GTP-binding ADP-ribosy 99.7 3.3E-16 7.2E-21 132.9 10.8 166 11-192 12-178 (181)
333 cd01885 EF2 EF2 (for archaea a 99.7 2E-15 4.4E-20 138.1 16.7 166 18-193 2-221 (222)
334 cd04160 Arfrp1 Arfrp1 subfamil 99.7 8.8E-16 1.9E-20 135.9 14.0 115 371-493 1-121 (167)
335 TIGR03680 eif2g_arch translati 99.7 7.4E-16 1.6E-20 155.0 15.0 166 14-194 2-198 (406)
336 cd01898 Obg Obg subfamily. Th 99.7 7.5E-16 1.6E-20 136.7 13.4 135 371-507 2-142 (170)
337 PF02421 FeoB_N: Ferrous iron 99.7 1.9E-16 4E-21 135.0 8.9 133 370-513 1-139 (156)
338 cd01858 NGP_1 NGP-1. Autoanti 99.7 1.9E-15 4.1E-20 132.0 15.6 90 81-189 3-92 (157)
339 cd04159 Arl10_like Arl10-like 99.7 1.5E-15 3.3E-20 132.8 14.9 115 372-494 2-116 (159)
340 COG2262 HflX GTPases [General 99.7 9.8E-16 2.1E-20 146.1 14.5 157 15-194 191-358 (411)
341 PRK05433 GTP-binding protein L 99.7 1.3E-15 2.8E-20 159.3 16.7 158 17-194 8-186 (600)
342 cd04167 Snu114p Snu114p subfam 99.7 1.8E-15 4E-20 139.1 15.6 168 18-193 2-212 (213)
343 TIGR03156 GTP_HflX GTP-binding 99.7 1.3E-15 2.9E-20 149.3 14.9 119 368-493 188-315 (351)
344 TIGR00157 ribosome small subun 99.7 1.2E-15 2.6E-20 142.3 13.9 93 74-186 24-117 (245)
345 KOG0073 GTP-binding ADP-ribosy 99.7 1.6E-15 3.5E-20 124.9 12.5 116 369-493 16-131 (185)
346 cd01899 Ygr210 Ygr210 subfamil 99.7 5.1E-15 1.1E-19 142.4 18.1 77 19-98 1-111 (318)
347 PRK12735 elongation factor Tu; 99.7 2.5E-15 5.4E-20 150.7 16.1 176 12-193 8-204 (396)
348 PRK12736 elongation factor Tu; 99.6 2.6E-15 5.7E-20 150.5 15.8 173 13-194 9-203 (394)
349 TIGR01394 TypA_BipA GTP-bindin 99.6 3.4E-15 7.4E-20 155.5 16.6 170 18-194 3-193 (594)
350 TIGR00436 era GTP-binding prot 99.6 2E-15 4.3E-20 144.0 13.6 130 371-509 2-137 (270)
351 cd04105 SR_beta Signal recogni 99.6 2.4E-15 5.1E-20 137.0 13.5 121 371-494 2-124 (203)
352 cd01883 EF1_alpha Eukaryotic e 99.6 1.5E-15 3.3E-20 140.1 12.3 148 18-168 1-193 (219)
353 COG1159 Era GTPase [General fu 99.6 1.3E-15 2.9E-20 139.6 11.5 119 370-496 7-131 (298)
354 TIGR00450 mnmE_trmE_thdF tRNA 99.6 1.3E-15 2.7E-20 153.7 12.4 130 368-512 202-338 (442)
355 PF01926 MMR_HSR1: 50S ribosom 99.6 2.1E-15 4.5E-20 124.7 11.5 104 18-128 1-116 (116)
356 PF08356 EF_assoc_2: EF hand a 99.6 7.4E-16 1.6E-20 115.6 7.9 87 173-260 2-88 (89)
357 PRK04004 translation initiatio 99.6 5.5E-15 1.2E-19 154.0 17.4 115 14-132 4-136 (586)
358 PF10662 PduV-EutP: Ethanolami 99.6 3.1E-15 6.7E-20 124.4 12.3 136 18-188 3-142 (143)
359 COG3596 Predicted GTPase [Gene 99.6 4.2E-15 9.2E-20 134.2 14.0 168 13-195 36-225 (296)
360 TIGR00483 EF-1_alpha translati 99.6 1.9E-15 4.2E-20 153.5 13.4 175 13-189 4-216 (426)
361 PRK10218 GTP-binding protein; 99.6 7.5E-15 1.6E-19 152.7 17.8 174 15-195 4-198 (607)
362 COG1163 DRG Predicted GTPase [ 99.6 7.5E-15 1.6E-19 135.1 15.3 183 16-224 63-339 (365)
363 cd01859 MJ1464 MJ1464. This f 99.6 1.3E-14 2.9E-19 126.6 16.3 93 78-192 4-96 (156)
364 cd04155 Arl3 Arl3 subfamily. 99.6 1.2E-14 2.6E-19 129.4 16.3 116 369-493 14-129 (173)
365 PRK04000 translation initiatio 99.6 5E-15 1.1E-19 148.8 15.3 167 13-194 6-203 (411)
366 CHL00071 tufA elongation facto 99.6 8E-15 1.7E-19 147.7 16.7 176 13-192 9-211 (409)
367 KOG1489 Predicted GTP-binding 99.6 4.4E-15 9.4E-20 136.0 13.1 152 16-189 196-364 (366)
368 COG2229 Predicted GTPase [Gene 99.6 2E-14 4.4E-19 121.8 16.1 160 12-190 6-176 (187)
369 PRK12299 obgE GTPase CgtA; Rev 99.6 4.5E-15 9.8E-20 144.2 13.9 142 370-513 159-306 (335)
370 cd01890 LepA LepA subfamily. 99.6 4.9E-15 1.1E-19 132.7 12.8 131 371-511 2-150 (179)
371 TIGR00485 EF-Tu translation el 99.6 8.8E-15 1.9E-19 146.9 15.9 172 13-192 9-201 (394)
372 cd04171 SelB SelB subfamily. 99.6 6.7E-15 1.5E-19 129.7 12.8 112 371-494 2-119 (164)
373 PF00025 Arf: ADP-ribosylation 99.6 9.7E-15 2.1E-19 129.8 13.7 118 367-493 12-129 (175)
374 KOG0074 GTP-binding ADP-ribosy 99.6 5.8E-15 1.3E-19 118.1 10.4 164 13-193 14-180 (185)
375 cd01891 TypA_BipA TypA (tyrosi 99.6 5.2E-15 1.1E-19 134.2 11.5 127 370-505 3-145 (194)
376 TIGR02729 Obg_CgtA Obg family 99.6 1E-14 2.2E-19 141.8 13.9 142 370-513 158-307 (329)
377 cd04169 RF3 RF3 subfamily. Pe 99.6 2.6E-14 5.7E-19 135.0 15.5 128 17-152 3-152 (267)
378 PRK12289 GTPase RsgA; Reviewed 99.6 2.2E-14 4.8E-19 139.6 14.9 86 80-186 83-169 (352)
379 PLN03127 Elongation factor Tu; 99.6 2.9E-14 6.3E-19 144.1 16.2 174 12-194 57-254 (447)
380 PRK00049 elongation factor Tu; 99.6 2.9E-14 6.3E-19 142.9 16.0 174 13-192 9-203 (396)
381 cd01886 EF-G Elongation factor 99.6 2E-14 4.3E-19 136.0 13.8 141 18-166 1-161 (270)
382 COG1084 Predicted GTPase [Gene 99.6 3.9E-14 8.3E-19 131.1 15.1 155 14-190 166-334 (346)
383 cd01897 NOG NOG1 is a nucleola 99.6 3E-14 6.4E-19 126.2 13.8 133 371-513 2-146 (168)
384 PTZ00099 rab6; Provisional 99.6 2.7E-14 5.8E-19 126.7 13.3 117 392-513 3-120 (176)
385 KOG1673 Ras GTPases [General f 99.6 7.4E-15 1.6E-19 119.5 8.8 162 15-191 19-185 (205)
386 cd01879 FeoB Ferrous iron tran 99.6 1.2E-14 2.5E-19 127.3 10.9 129 374-513 1-135 (158)
387 KOG3883 Ras family small GTPas 99.6 3.6E-14 7.9E-19 115.2 12.7 141 369-512 9-152 (198)
388 KOG0076 GTP-binding ADP-ribosy 99.6 5.9E-15 1.3E-19 122.9 8.0 167 13-194 14-189 (197)
389 KOG3883 Ras family small GTPas 99.6 1.3E-13 2.7E-18 112.1 15.5 167 15-201 8-184 (198)
390 PRK09866 hypothetical protein; 99.6 9.3E-14 2E-18 140.2 18.0 111 63-189 230-350 (741)
391 cd01855 YqeH YqeH. YqeH is an 99.6 3.6E-14 7.9E-19 128.2 13.8 94 76-190 24-123 (190)
392 PRK11058 GTPase HflX; Provisio 99.6 1.9E-14 4.1E-19 144.4 13.1 121 369-493 197-323 (426)
393 TIGR00231 small_GTP small GTP- 99.6 3.5E-14 7.6E-19 124.0 13.2 121 370-495 2-124 (161)
394 PRK15494 era GTPase Era; Provi 99.6 2.8E-14 6.1E-19 139.8 13.7 129 368-508 51-187 (339)
395 COG0486 ThdF Predicted GTPase 99.6 5.8E-15 1.2E-19 143.6 8.7 120 366-494 214-339 (454)
396 PRK05506 bifunctional sulfate 99.6 2.5E-14 5.5E-19 152.2 14.3 152 12-169 20-210 (632)
397 PLN03126 Elongation factor Tu; 99.6 5.5E-14 1.2E-18 142.8 16.1 173 13-191 78-279 (478)
398 cd01856 YlqF YlqF. Proteins o 99.6 5.1E-14 1.1E-18 124.7 13.9 91 77-191 10-100 (171)
399 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 1.2E-13 2.5E-18 125.4 15.9 159 17-193 1-185 (196)
400 KOG0071 GTP-binding ADP-ribosy 99.6 5.5E-14 1.2E-18 112.5 11.8 162 14-192 15-178 (180)
401 TIGR03596 GTPase_YlqF ribosome 99.6 1.3E-13 2.8E-18 131.6 16.5 92 77-192 12-103 (276)
402 PRK05124 cysN sulfate adenylyl 99.6 5.1E-14 1.1E-18 143.8 14.3 152 12-169 23-214 (474)
403 cd01857 HSR1_MMR1 HSR1/MMR1. 99.6 1.2E-13 2.5E-18 118.3 14.4 53 80-134 5-57 (141)
404 TIGR02034 CysN sulfate adenyly 99.5 5.3E-14 1.1E-18 141.5 13.7 150 17-169 1-186 (406)
405 KOG0096 GTPase Ran/TC4/GSP1 (n 99.5 1.2E-14 2.6E-19 122.8 7.2 121 368-494 9-129 (216)
406 cd01849 YlqF_related_GTPase Yl 99.5 1.9E-13 4.1E-18 119.0 15.0 82 88-190 1-83 (155)
407 TIGR03598 GTPase_YsxC ribosome 99.5 8.8E-14 1.9E-18 124.4 13.2 130 367-508 16-161 (179)
408 PRK12288 GTPase RsgA; Reviewed 99.5 1.3E-13 2.8E-18 134.4 15.3 86 84-187 118-203 (347)
409 PTZ00327 eukaryotic translatio 99.5 1.1E-13 2.5E-18 139.4 15.2 166 14-194 32-235 (460)
410 PRK09563 rbgA GTPase YlqF; Rev 99.5 2.5E-13 5.5E-18 130.2 16.1 98 70-192 7-106 (287)
411 cd04170 EF-G_bact Elongation f 99.5 1.8E-13 3.9E-18 130.5 15.0 140 18-167 1-160 (268)
412 PRK09602 translation-associate 99.5 3.2E-13 6.9E-18 134.1 17.2 78 17-97 2-113 (396)
413 PRK00089 era GTPase Era; Revie 99.5 1.2E-13 2.5E-18 133.8 13.5 132 370-509 6-144 (292)
414 KOG0070 GTP-binding ADP-ribosy 99.5 8E-14 1.7E-18 118.5 10.4 118 367-493 15-132 (181)
415 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 1.1E-13 2.4E-18 122.4 11.7 114 371-493 2-116 (168)
416 PF09439 SRPRB: Signal recogni 99.5 5E-14 1.1E-18 122.8 8.9 118 16-134 3-127 (181)
417 PRK05291 trmE tRNA modificatio 99.5 6.4E-14 1.4E-18 142.4 11.2 115 368-493 214-335 (449)
418 PRK00741 prfC peptide chain re 99.5 4E-13 8.6E-18 138.3 17.0 116 14-133 8-145 (526)
419 COG0536 Obg Predicted GTPase [ 99.5 3.2E-13 7E-18 125.5 14.6 157 18-193 161-334 (369)
420 PF05049 IIGP: Interferon-indu 99.5 1.9E-13 4.1E-18 132.2 13.5 167 14-196 33-222 (376)
421 PRK13351 elongation factor G; 99.5 3.8E-13 8.2E-18 144.9 17.2 116 15-134 7-140 (687)
422 PRK12297 obgE GTPase CgtA; Rev 99.5 2.6E-13 5.7E-18 135.2 14.4 138 370-512 159-304 (424)
423 PRK00098 GTPase RsgA; Reviewed 99.5 3.3E-13 7.2E-18 129.9 14.3 85 83-186 77-161 (298)
424 cd00882 Ras_like_GTPase Ras-li 99.5 4.4E-13 9.6E-18 115.9 13.8 117 374-495 1-118 (157)
425 PRK12298 obgE GTPase CgtA; Rev 99.5 2.8E-13 6E-18 134.4 13.7 135 370-509 160-305 (390)
426 cd01881 Obg_like The Obg-like 99.5 1.5E-13 3.2E-18 122.6 10.7 121 374-495 1-136 (176)
427 PRK04213 GTP-binding protein; 99.5 9.5E-14 2.1E-18 126.8 9.6 129 369-510 9-159 (201)
428 PRK12739 elongation factor G; 99.5 7.3E-13 1.6E-17 142.2 17.3 116 15-134 7-140 (691)
429 cd01895 EngA2 EngA2 subfamily. 99.5 3.8E-13 8.2E-18 119.5 12.6 117 369-494 2-128 (174)
430 KOG1673 Ras GTPases [General f 99.5 1.4E-13 3.1E-18 112.1 8.7 140 368-513 19-164 (205)
431 PRK15467 ethanolamine utilizat 99.5 9.2E-14 2E-18 121.3 8.3 116 371-513 3-125 (158)
432 TIGR00484 EF-G translation elo 99.5 5.1E-13 1.1E-17 143.5 15.7 143 16-166 10-172 (689)
433 cd01850 CDC_Septin CDC/Septin. 99.5 4.5E-13 9.8E-18 127.3 13.3 115 16-134 4-158 (276)
434 KOG0096 GTPase Ran/TC4/GSP1 (n 99.5 6.4E-14 1.4E-18 118.5 6.5 147 15-168 9-157 (216)
435 PRK12296 obgE GTPase CgtA; Rev 99.5 5.2E-13 1.1E-17 134.6 13.7 125 369-495 159-300 (500)
436 KOG1145 Mitochondrial translat 99.5 6.5E-13 1.4E-17 129.9 13.3 159 8-190 145-314 (683)
437 cd01882 BMS1 Bms1. Bms1 is an 99.5 3E-12 6.6E-17 118.3 17.3 143 12-166 35-182 (225)
438 COG0532 InfB Translation initi 99.5 3.7E-13 8E-18 132.9 11.7 157 15-190 4-168 (509)
439 cd04163 Era Era subfamily. Er 99.5 7.3E-13 1.6E-17 116.8 12.6 131 369-508 3-141 (168)
440 TIGR00503 prfC peptide chain r 99.5 1.3E-12 2.7E-17 134.7 15.8 116 14-133 9-146 (527)
441 KOG1191 Mitochondrial GTPase [ 99.4 1.7E-13 3.7E-18 132.8 8.2 126 368-494 267-404 (531)
442 KOG0074 GTP-binding ADP-ribosy 99.4 6.8E-13 1.5E-17 106.4 10.1 132 367-510 15-146 (185)
443 cd01854 YjeQ_engC YjeQ/EngC. 99.4 1.7E-12 3.7E-17 124.3 14.6 82 83-185 75-157 (287)
444 cd04164 trmE TrmE (MnmE, ThdF, 99.4 7.2E-13 1.6E-17 115.7 10.6 114 370-494 2-122 (157)
445 TIGR03597 GTPase_YqeH ribosome 99.4 1.5E-12 3.3E-17 128.6 13.9 97 74-188 51-149 (360)
446 PTZ00141 elongation factor 1- 99.4 1.1E-12 2.4E-17 132.9 13.1 152 13-168 4-201 (446)
447 KOG0075 GTP-binding ADP-ribosy 99.4 3.8E-13 8.3E-18 108.6 7.6 116 370-493 21-136 (186)
448 cd00881 GTP_translation_factor 99.4 1.6E-12 3.4E-17 117.4 12.7 114 371-493 1-128 (189)
449 PRK00454 engB GTP-binding prot 99.4 1.8E-12 3.9E-17 117.8 12.9 117 366-494 21-150 (196)
450 PRK00007 elongation factor G; 99.4 1.7E-12 3.7E-17 139.3 14.7 143 15-165 9-171 (693)
451 cd01894 EngA1 EngA1 subfamily. 99.4 5.2E-13 1.1E-17 116.6 8.9 114 373-495 1-121 (157)
452 KOG0072 GTP-binding ADP-ribosy 99.4 6.4E-13 1.4E-17 106.9 8.4 160 15-192 17-179 (182)
453 KOG0462 Elongation factor-type 99.4 2.3E-12 5.1E-17 126.2 13.7 164 15-198 59-241 (650)
454 KOG0071 GTP-binding ADP-ribosy 99.4 3.4E-12 7.3E-17 102.3 12.1 117 369-494 17-133 (180)
455 cd01889 SelB_euk SelB subfamil 99.4 1.2E-12 2.6E-17 118.5 11.1 115 370-493 1-134 (192)
456 PLN00043 elongation factor 1-a 99.4 1.7E-12 3.6E-17 131.6 13.1 152 13-168 4-201 (447)
457 PF04670 Gtr1_RagA: Gtr1/RagA 99.4 4.4E-12 9.6E-17 115.9 14.5 149 18-166 1-163 (232)
458 TIGR00487 IF-2 translation ini 99.4 3.8E-12 8.3E-17 132.5 15.6 116 368-493 86-201 (587)
459 COG0218 Predicted GTPase [Gene 99.4 5.4E-12 1.2E-16 109.9 13.3 131 367-510 22-166 (200)
460 cd04178 Nucleostemin_like Nucl 99.4 7.9E-12 1.7E-16 109.9 14.2 56 368-427 116-171 (172)
461 TIGR01393 lepA GTP-binding pro 99.4 4E-12 8.6E-17 133.1 14.5 132 369-510 3-152 (595)
462 PRK09554 feoB ferrous iron tra 99.4 2.4E-12 5.2E-17 137.9 13.0 133 370-513 4-146 (772)
463 TIGR00991 3a0901s02IAP34 GTP-b 99.4 5.3E-12 1.2E-16 118.9 13.6 119 13-134 35-168 (313)
464 cd01853 Toc34_like Toc34-like 99.4 4.7E-12 1E-16 118.0 13.1 122 11-134 26-164 (249)
465 TIGR02836 spore_IV_A stage IV 99.4 1.4E-11 3.1E-16 118.3 16.3 159 16-192 17-237 (492)
466 KOG1707 Predicted Ras related/ 99.4 2.6E-12 5.7E-17 127.0 11.3 123 368-495 8-131 (625)
467 PRK13796 GTPase YqeH; Provisio 99.4 9.5E-12 2.1E-16 123.1 15.3 91 81-189 63-156 (365)
468 PRK12740 elongation factor G; 99.4 8.2E-12 1.8E-16 134.4 15.9 109 22-134 1-127 (668)
469 PF01926 MMR_HSR1: 50S ribosom 99.4 8.8E-12 1.9E-16 102.9 12.5 105 371-488 1-116 (116)
470 KOG1423 Ras-like GTPase ERA [C 99.4 1.7E-12 3.7E-17 118.4 8.6 120 367-494 70-200 (379)
471 cd04166 CysN_ATPS CysN_ATPS su 99.4 3.8E-12 8.3E-17 116.5 11.1 132 371-510 1-166 (208)
472 cd01850 CDC_Septin CDC/Septin. 99.4 1.2E-11 2.7E-16 117.5 14.6 138 369-514 4-181 (276)
473 TIGR00437 feoB ferrous iron tr 99.4 2.4E-12 5.3E-17 134.8 10.2 127 376-513 1-133 (591)
474 KOG4423 GTP-binding protein-li 99.4 1.8E-14 3.9E-19 121.1 -4.7 142 368-511 24-169 (229)
475 TIGR00491 aIF-2 translation in 99.3 5.1E-12 1.1E-16 131.3 11.9 111 371-493 6-135 (590)
476 cd04169 RF3 RF3 subfamily. Pe 99.3 1.5E-11 3.3E-16 116.3 13.7 131 370-510 3-153 (267)
477 KOG4423 GTP-binding protein-li 99.3 7.6E-14 1.6E-18 117.4 -2.3 160 17-191 26-193 (229)
478 KOG0090 Signal recognition par 99.3 1.8E-11 3.9E-16 106.1 11.9 115 17-134 39-160 (238)
479 cd04168 TetM_like Tet(M)-like 99.3 1.1E-11 2.4E-16 115.2 11.5 115 371-494 1-131 (237)
480 TIGR00475 selB selenocysteine- 99.3 1.4E-11 3E-16 129.0 13.6 124 371-508 2-135 (581)
481 COG4917 EutP Ethanolamine util 99.3 7.1E-12 1.5E-16 98.7 8.0 138 18-190 3-144 (148)
482 COG2262 HflX GTPases [General 99.3 3.2E-11 7E-16 115.5 14.0 122 366-494 189-319 (411)
483 cd01884 EF_Tu EF-Tu subfamily. 99.3 3.3E-11 7.1E-16 108.5 13.0 132 369-510 2-153 (195)
484 COG1084 Predicted GTPase [Gene 99.3 4.9E-11 1.1E-15 110.8 14.3 118 365-493 164-294 (346)
485 COG5256 TEF1 Translation elong 99.3 2.4E-11 5.1E-16 116.3 12.5 154 13-168 4-199 (428)
486 COG2229 Predicted GTPase [Gene 99.3 4.7E-11 1E-15 101.5 12.7 119 368-495 9-137 (187)
487 PTZ00258 GTP-binding protein; 99.3 4E-11 8.7E-16 117.7 13.8 81 14-97 19-126 (390)
488 PF09439 SRPRB: Signal recogni 99.3 5.4E-12 1.2E-16 110.1 6.7 120 371-494 5-127 (181)
489 PRK12317 elongation factor 1-a 99.3 1.8E-11 3.8E-16 124.7 11.3 139 366-510 3-175 (425)
490 KOG1490 GTP-binding protein CR 99.3 2.6E-11 5.6E-16 117.7 11.6 149 13-168 165-329 (620)
491 PRK13768 GTPase; Provisional 99.3 8.7E-11 1.9E-15 110.4 15.0 120 63-194 97-249 (253)
492 cd04167 Snu114p Snu114p subfam 99.3 2.2E-11 4.7E-16 112.1 10.7 113 371-492 2-136 (213)
493 KOG0077 Vesicle coat complex C 99.3 2.2E-11 4.8E-16 100.9 8.9 118 14-134 18-136 (193)
494 CHL00189 infB translation init 99.3 2.9E-11 6.3E-16 127.7 12.0 117 368-493 243-361 (742)
495 cd01885 EF2 EF2 (for archaea a 99.3 5.2E-11 1.1E-15 109.1 11.9 113 371-492 2-138 (222)
496 cd04104 p47_IIGP_like p47 (47- 99.3 3.5E-11 7.6E-16 109.1 10.7 112 370-493 2-121 (197)
497 PF00009 GTP_EFTU: Elongation 99.3 2.6E-11 5.7E-16 109.3 9.6 118 368-494 2-137 (188)
498 PF04548 AIG1: AIG1 family; I 99.3 1.7E-10 3.8E-15 105.7 15.1 166 17-193 1-187 (212)
499 cd01896 DRG The developmentall 99.2 6.6E-11 1.4E-15 109.9 12.3 85 371-457 2-91 (233)
500 COG0481 LepA Membrane GTPase L 99.2 7.6E-11 1.6E-15 113.8 12.5 162 16-197 9-191 (603)
No 1
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=100.00 E-value=2.6e-80 Score=600.37 Aligned_cols=490 Identities=51% Similarity=0.833 Sum_probs=451.1
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 11 ~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
.+.+..+||+++|+.||||||||-+|+..++..++++..+.++++..+.++.++..|+||+.-++......+.+++||+|
T Consensus 4 ~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 4 DETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred ccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEE
Confidence 45678899999999999999999999999999999999999999999999999999999998777777788899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccc-
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI- 166 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~- 166 (514)
++||+++++.+++.+..+|++.+++.. .+.|||+||||+|+... ...+.+..+..++.+|.+++.||+|||++..
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~-~~~s~e~~~~pim~~f~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN-ENNSDEVNTLPIMIAFAEIETCIECSALTLAN 162 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc-cccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence 999999999999999999999999987 78999999999999876 3334455688999999999999999999876
Q ss_pred ----------------------------------------------------------cceecCCCCChhhHHHHHHHHH
Q 010254 167 ----------------------------------------------------------QVKCFNSPLQPSEIVGVKRVVQ 188 (514)
Q Consensus 167 ----------------------------------------------------------~~~~f~~~l~~~~i~~L~~~i~ 188 (514)
++.||+.+++++.++.++..+.
T Consensus 163 ~~e~fYyaqKaVihPt~PLyda~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~ 242 (625)
T KOG1707|consen 163 VSELFYYAQKAVIHPTSPLYDAEEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQ 242 (625)
T ss_pred hHhhhhhhhheeeccCccccccccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 6699999999999999999999
Q ss_pred HHhcCcccCCCcchhhHHHHHHHHHhcCCcchhhHHHhhccCCCccccccCCCCCCCccCCCCCceecChhHHHHHHHHH
Q 010254 189 EKLREGVNERGLTLAGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAIDFLKGIF 268 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~elt~~~~~~L~~iF 268 (514)
+.+|++..+.++++.||++++.+|++|||++++|.+||+|+|++++++..++++. .+..+++++.|+++.+++||..+|
T Consensus 243 e~~p~gv~~~~ltl~GFLfL~~lfiergr~EttW~iLR~fgY~DsleL~~~~l~p-~~~~~p~~s~ELs~~~~~Fl~~~f 321 (625)
T KOG1707|consen 243 EICPDGVYERGLTLPGFLFLNTLFIERGRHETTWTILRKFGYTDSLELTDEYLPP-RLKVPPDQSVELSPKGYRFLVDVF 321 (625)
T ss_pred hhcCchhhhccccccchHHHHHHHHHhccccchhhhhhhcCCcchhhhhhhhcCc-cccCCCCcceeccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999974 999999999999999999999999
Q ss_pred HhhcCCCCCCCCHHhHHhhhccCCCCCCCCCcccccccccCCCcccHHHHHHHhhhhhcCCHHHHHHHHHHhCCCCC---
Q 010254 269 ELFDADDDNSLRPIEVEDLFSTAPECPWDEAPYKDAAEKTALGGLSLDGFLSEWALMTLLDPARSVENLIYIGYPGD--- 345 (514)
Q Consensus 269 ~~fd~~~d~~l~~~~l~~~f~~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~w~~~~~~~~~~~~~~l~~~g~~~~--- 345 (514)
.+||.|+||+|++.|+..+|+++|..||....+++..+.++.|++|+++|+++|+++|++|+..+++||.|+||+..
T Consensus 322 ~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~~~~~G~ltl~g~l~~WsL~Tlld~~~t~~~L~Ylgf~~~~~~ 401 (625)
T KOG1707|consen 322 EKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTVKNERGWLTLNGFLSQWSLMTLLDPRRTLEYLAYLGFPTDAGS 401 (625)
T ss_pred HhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccceecccceeehhhHHHHHHHHhhccHHHHHHHHHhcCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred hhhHHHHhhhhhhhhhhhcccCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEec
Q 010254 346 PSSAIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLRE 425 (514)
Q Consensus 346 ~~~a~~~~~~~~~~~~~~~~~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt 425 (514)
+.++++++|+|+.+++++..+|.+++|+++|+.++|||.|++.|++..+...+..+...++.++.+... ++.+++++.+
T Consensus 402 ~~~ai~vtRkr~~d~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~-g~~k~LiL~e 480 (625)
T KOG1707|consen 402 QASAIRVTRKRKLDRKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVK-GQQKYLILRE 480 (625)
T ss_pred cccceehhhhhhhhhccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeec-cccceEEEee
Confidence 899999999999999999999999999999999999999999999999988666788889999999999 8999999999
Q ss_pred CChhHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc-chhhHHHH
Q 010254 426 IPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM-AIQDSTRV 504 (514)
Q Consensus 426 ~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~ 504 (514)
+|..... ....++ ..||+++++||++++.||+.+...+....... ..||++|++|+|+.+.++ ......++
T Consensus 481 i~~~~~~-~l~~ke--~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~-----~~Pc~~va~K~dlDe~~Q~~~iqpde~ 552 (625)
T KOG1707|consen 481 IGEDDQD-FLTSKE--AACDVACLVYDSSNPRSFEYLAEVYNKYFDLY-----KIPCLMVATKADLDEVPQRYSIQPDEF 552 (625)
T ss_pred cCccccc-cccCcc--ceeeeEEEecccCCchHHHHHHHHHHHhhhcc-----CCceEEEeeccccchhhhccCCChHHH
Confidence 9875332 333344 88999999999999999999988877655443 799999999999988653 33445899
Q ss_pred HHHcCCc
Q 010254 505 FTFLVMV 511 (514)
Q Consensus 505 ~~~~~~~ 511 (514)
|++++++
T Consensus 553 ~~~~~i~ 559 (625)
T KOG1707|consen 553 CRQLGLP 559 (625)
T ss_pred HHhcCCC
Confidence 9999875
No 2
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=3.1e-44 Score=344.64 Aligned_cols=280 Identities=18% Similarity=0.152 Sum_probs=218.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeCCeeEEEEEeCCCCccch-h--------hHHHhh
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYPDRVPITIIDTPSSVEDR-G--------KLGEEL 84 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~~~~~~~l~Dt~G~~~~~-~--------~~~~~~ 84 (514)
..|+|+|+||||||||||||++++ .+++...||+|... ...+.+.+|.++||+|++... + +...++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r--~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRR--IAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCe--eeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 679999999999999999999999 88999999999554 444667889999999998533 1 345679
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccc
Q 010254 85 RRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALK 164 (514)
Q Consensus 85 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 164 (514)
.+||++|||+|+..+.+..+. .+...+++. ++|+|+|+||+|.... ++...++. .+ +++.++++||.|
T Consensus 82 ~eADvilfvVD~~~Git~~D~--~ia~~Lr~~--~kpviLvvNK~D~~~~------e~~~~efy-sl-G~g~~~~ISA~H 149 (444)
T COG1160 82 EEADVILFVVDGREGITPADE--EIAKILRRS--KKPVILVVNKIDNLKA------EELAYEFY-SL-GFGEPVPISAEH 149 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHH--HHHHHHHhc--CCCEEEEEEcccCchh------hhhHHHHH-hc-CCCCceEeehhh
Confidence 999999999998877665544 488999865 7999999999997643 22222222 22 245899999999
Q ss_pred cccceecCCCCChhhHHHHHHHHHHHhcCcccCCCcchhhHHHHHHHHHhcCCcchhhHHHhhccCCCccccccCCCCCC
Q 010254 165 QIQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLADELIPYS 244 (514)
Q Consensus 165 ~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~~~~~~L~~~~~~~~~~~~~~~~~~~ 244 (514)
|. |+.+|++.+.+.+| ..... +
T Consensus 150 g~------------Gi~dLld~v~~~l~-~~e~~-------------------------------------------~-- 171 (444)
T COG1160 150 GR------------GIGDLLDAVLELLP-PDEEE-------------------------------------------E-- 171 (444)
T ss_pred cc------------CHHHHHHHHHhhcC-Ccccc-------------------------------------------c--
Confidence 99 99999999998775 21000 0
Q ss_pred CccCCCCCceecChhHHHHHHHHHHhhcCCCCCCCCHHhHHhhhccCCCCCCCCCcccccccccCCCcccHHHHHHHhhh
Q 010254 245 AFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECPWDEAPYKDAAEKTALGGLSLDGFLSEWAL 324 (514)
Q Consensus 245 ~l~~~~~~~~elt~~~~~~L~~iF~~fd~~~d~~l~~~~l~~~f~~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~w~~ 324 (514)
.+
T Consensus 172 ----------------------------~~-------------------------------------------------- 173 (444)
T COG1160 172 ----------------------------EE-------------------------------------------------- 173 (444)
T ss_pred ----------------------------cc--------------------------------------------------
Confidence 00
Q ss_pred hhcCCHHHHHHHHHHhCCCCChhhHHHHhhhhhhhhhhhcccCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCc
Q 010254 325 MTLLDPARSVENLIYIGYPGDPSSAIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDE 404 (514)
Q Consensus 325 ~~~~~~~~~~~~l~~~g~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~ 404 (514)
.....+||+|+|+||||||||+|+++++++..+++.++++
T Consensus 174 ----------------------------------------~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTT 213 (444)
T COG1160 174 ----------------------------------------EETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTT 213 (444)
T ss_pred ----------------------------------------ccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCcc
Confidence 0013489999999999999999999999999999999999
Q ss_pred cEEEEEEECCCCcEEEEEEecCChhH---------HHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCC
Q 010254 405 RYAVNVVDQPGGTKKTVVLREIPEEA---------VAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGED 475 (514)
Q Consensus 405 ~~~~~~~~~~~~~~~~~i~dt~g~~~---------~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~ 475 (514)
++.+...... +...+.++||||.++ +.++.++...+..+|+|++|.|++++ +.+++..+..+....
T Consensus 214 RD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~~-- 288 (444)
T COG1160 214 RDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEG--ISEQDLRIAGLIEEA-- 288 (444)
T ss_pred ccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCC--chHHHHHHHHHHHHc--
Confidence 9988776655 566777889999322 22234456788899999999999998 666766666655554
Q ss_pred CCCCCcEEEEEeCCCCccc
Q 010254 476 TGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 476 ~~~~~p~ilv~nK~Dl~~~ 494 (514)
+.++++|.||||+.++
T Consensus 289 ---g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 289 ---GRGIVIVVNKWDLVEE 304 (444)
T ss_pred ---CCCeEEEEEccccCCc
Confidence 7999999999998775
No 3
>PRK03003 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=9e-38 Score=319.72 Aligned_cols=276 Identities=21% Similarity=0.158 Sum_probs=194.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccc--------hhhHHHhhh
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVED--------RGKLGEELR 85 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~ 85 (514)
.+|+|+|+||||||||+|+|+++.. +.....+++|.. ..+...+..+.+|||||++.. ......+++
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~--~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRRE--AVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCc--ccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 7899999999999999999999874 444445666632 233455678999999998632 223455789
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccc
Q 010254 86 RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (514)
Q Consensus 86 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~ 165 (514)
+||++|+|+|++++.+.... .|...+++. ++|+++|+||+|+... . .....+. .++ +..+++|||++|
T Consensus 117 ~aD~il~VvD~~~~~s~~~~--~i~~~l~~~--~~piilV~NK~Dl~~~-~-----~~~~~~~-~~g-~~~~~~iSA~~g 184 (472)
T PRK03003 117 TADAVLFVVDATVGATATDE--AVARVLRRS--GKPVILAANKVDDERG-E-----ADAAALW-SLG-LGEPHPVSALHG 184 (472)
T ss_pred hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCCcc-c-----hhhHHHH-hcC-CCCeEEEEcCCC
Confidence 99999999999988776543 377888765 8999999999998643 1 1111111 222 235689999999
Q ss_pred ccceecCCCCChhhHHHHHHHHHHHhcCcccCCCcchhhHHHHHHHHHhcCCcchhhHHHhhccCCCccccccCCCCCCC
Q 010254 166 IQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLADELIPYSA 245 (514)
Q Consensus 166 ~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 245 (514)
. |+++|++.|.+.++..... .
T Consensus 185 ~------------gi~eL~~~i~~~l~~~~~~--------------------------------------------~--- 205 (472)
T PRK03003 185 R------------GVGDLLDAVLAALPEVPRV--------------------------------------------G--- 205 (472)
T ss_pred C------------CcHHHHHHHHhhccccccc--------------------------------------------c---
Confidence 9 9999998887655321000 0
Q ss_pred ccCCCCCceecChhHHHHHHHHHHhhcCCCCCCCCHHhHHhhhccCCCCCCCCCcccccccccCCCcccHHHHHHHhhhh
Q 010254 246 FKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECPWDEAPYKDAAEKTALGGLSLDGFLSEWALM 325 (514)
Q Consensus 246 l~~~~~~~~elt~~~~~~L~~iF~~fd~~~d~~l~~~~l~~~f~~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~w~~~ 325 (514)
T Consensus 206 -------------------------------------------------------------------------------- 205 (472)
T PRK03003 206 -------------------------------------------------------------------------------- 205 (472)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCHHHHHHHHHHhCCCCChhhHHHHhhhhhhhhhhhcccCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCc-
Q 010254 326 TLLDPARSVENLIYIGYPGDPSSAIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDE- 404 (514)
Q Consensus 326 ~~~~~~~~~~~l~~~g~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~- 404 (514)
......+||+++|+||||||||+|+|++.++..++..++++
T Consensus 206 --------------------------------------~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~ 247 (472)
T PRK03003 206 --------------------------------------SASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTV 247 (472)
T ss_pred --------------------------------------cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccC
Confidence 00012378999999999999999999999876544433333
Q ss_pred cEEEEEEECCCCcEEEEEEecCCh----------hHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCC
Q 010254 405 RYAVNVVDQPGGTKKTVVLREIPE----------EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGE 474 (514)
Q Consensus 405 ~~~~~~~~~~~~~~~~~i~dt~g~----------~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~ 474 (514)
+.....+... + ..+.+|||+|. +.|..+ .+...++.+|++++|||++++.+++.+. ++..+...
T Consensus 248 d~~~~~~~~~-~-~~~~l~DTaG~~~~~~~~~~~e~~~~~-~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~~-- 321 (472)
T PRK03003 248 DPVDSLIELG-G-KTWRFVDTAGLRRRVKQASGHEYYASL-RTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIEA-- 321 (472)
T ss_pred CcceEEEEEC-C-EEEEEEECCCccccccccchHHHHHHH-HHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHHc--
Confidence 3333445454 3 34568999994 444433 2245678999999999999998877764 33444332
Q ss_pred CCCCCCcEEEEEeCCCCcc
Q 010254 475 DTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 475 ~~~~~~p~ilv~nK~Dl~~ 493 (514)
++|+|+|+||||+..
T Consensus 322 ----~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 322 ----GRALVLAFNKWDLVD 336 (472)
T ss_pred ----CCCEEEEEECcccCC
Confidence 699999999999975
No 4
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=100.00 E-value=6.8e-36 Score=305.22 Aligned_cols=275 Identities=20% Similarity=0.208 Sum_probs=193.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccc--------hhhHHHhhhc
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVED--------RGKLGEELRR 86 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~~ 86 (514)
+|+|+|+||||||||+|+|++++ .+.+...+++|.. ..+...+..+.+|||||+... ......++++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~--~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKR--DAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC--cceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 58999999999999999999988 4555556666633 334456788999999998432 2334567899
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccc
Q 010254 87 ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (514)
Q Consensus 87 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~ 166 (514)
+|++++|+|+.++.+..+. .+...+++. ++|+++|+||+|+..... ...++ ..+ ++.+++++||++|.
T Consensus 79 ad~vl~vvD~~~~~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~~~------~~~~~-~~l-g~~~~~~vSa~~g~ 146 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE--EIAKWLRKS--GKPVILVANKIDGKKEDA------VAAEF-YSL-GFGEPIPISAEHGR 146 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEECccCCcccc------cHHHH-Hhc-CCCCeEEEeCCcCC
Confidence 9999999999876655543 377777776 899999999999876411 11111 223 23479999999999
Q ss_pred cceecCCCCChhhHHHHHHHHHHHhcCcccCCCcchhhHHHHHHHHHhcCCcchhhHHHhhccCCCccccccCCCCCCCc
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAF 246 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~~~~~~L~~~~~~~~~~~~~~~~~~~~l 246 (514)
|+++|.+.+.+.++.....
T Consensus 147 ------------gv~~ll~~i~~~l~~~~~~------------------------------------------------- 165 (429)
T TIGR03594 147 ------------GIGDLLDAILELLPEEEEE------------------------------------------------- 165 (429)
T ss_pred ------------ChHHHHHHHHHhcCccccc-------------------------------------------------
Confidence 9999998887655431000
Q ss_pred cCCCCCceecChhHHHHHHHHHHhhcCCCCCCCCHHhHHhhhccCCCCCCCCCcccccccccCCCcccHHHHHHHhhhhh
Q 010254 247 KRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECPWDEAPYKDAAEKTALGGLSLDGFLSEWALMT 326 (514)
Q Consensus 247 ~~~~~~~~elt~~~~~~L~~iF~~fd~~~d~~l~~~~l~~~f~~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~w~~~~ 326 (514)
T Consensus 166 -------------------------------------------------------------------------------- 165 (429)
T TIGR03594 166 -------------------------------------------------------------------------------- 165 (429)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCHHHHHHHHHHhCCCCChhhHHHHhhhhhhhhhhhcccCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccE
Q 010254 327 LLDPARSVENLIYIGYPGDPSSAIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERY 406 (514)
Q Consensus 327 ~~~~~~~~~~l~~~g~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~ 406 (514)
.......++|+++|.+|+|||||+|+|++.++...+..++++..
T Consensus 166 ------------------------------------~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~ 209 (429)
T TIGR03594 166 ------------------------------------EEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRD 209 (429)
T ss_pred ------------------------------------ccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceEC
Confidence 00001247899999999999999999999987666554444443
Q ss_pred EE-EEEECCCCcEEEEEEecCChhHHH---------hhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCC
Q 010254 407 AV-NVVDQPGGTKKTVVLREIPEEAVA---------KLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDT 476 (514)
Q Consensus 407 ~~-~~~~~~~~~~~~~i~dt~g~~~~~---------~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~ 476 (514)
.+ ..+... + ..+.+|||+|...+. ....+...++.+|++|+|+|++++.+.+... ++..+...
T Consensus 210 ~~~~~~~~~-~-~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~~---- 282 (429)
T TIGR03594 210 SIDIPFERN-G-KKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILEA---- 282 (429)
T ss_pred cEeEEEEEC-C-cEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHHc----
Confidence 33 233333 3 467789999953221 1222345788999999999999886665543 22223322
Q ss_pred CCCCcEEEEEeCCCCc
Q 010254 477 GFEVPCLIVAAKDDLD 492 (514)
Q Consensus 477 ~~~~p~ilv~nK~Dl~ 492 (514)
++|+++|+||||+.
T Consensus 283 --~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 283 --GKALVIVVNKWDLV 296 (429)
T ss_pred --CCcEEEEEECcccC
Confidence 69999999999997
No 5
>PRK00093 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=5.3e-35 Score=298.80 Aligned_cols=277 Identities=18% Similarity=0.143 Sum_probs=191.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeCCeeEEEEEeCCCCccc--------hhhHHHhhh
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYPDRVPITIIDTPSSVED--------RGKLGEELR 85 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~ 85 (514)
.+|+|+|+||||||||+|+|++++. +.+...+++|... .....+..+.+|||||++.. ......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~--~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRD--AIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc--eeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999999999999873 4444456665332 33455689999999999862 122345789
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccc
Q 010254 86 RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (514)
Q Consensus 86 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~ 165 (514)
++|++++|+|++++.+..+. .+..++++. ++|+++|+||+|+... ++...++ ..++ +..++++||++|
T Consensus 80 ~ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~------~~~~~~~-~~lg-~~~~~~iSa~~g 147 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDE------EADAYEF-YSLG-LGEPYPISAEHG 147 (435)
T ss_pred hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccc------hhhHHHH-HhcC-CCCCEEEEeeCC
Confidence 99999999999876554433 256667666 8999999999997542 1111222 1222 335899999999
Q ss_pred ccceecCCCCChhhHHHHHHHHHHHhcCcccCCCcchhhHHHHHHHHHhcCCcchhhHHHhhccCCCccccccCCCCCCC
Q 010254 166 IQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLADELIPYSA 245 (514)
Q Consensus 166 ~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 245 (514)
. |+++|.+.+.+..+.... .
T Consensus 148 ~------------gv~~l~~~I~~~~~~~~~---------------------------------------------~--- 167 (435)
T PRK00093 148 R------------GIGDLLDAILEELPEEEE---------------------------------------------E--- 167 (435)
T ss_pred C------------CHHHHHHHHHhhCCcccc---------------------------------------------c---
Confidence 9 999988887652111000 0
Q ss_pred ccCCCCCceecChhHHHHHHHHHHhhcCCCCCCCCHHhHHhhhccCCCCCCCCCcccccccccCCCcccHHHHHHHhhhh
Q 010254 246 FKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECPWDEAPYKDAAEKTALGGLSLDGFLSEWALM 325 (514)
Q Consensus 246 l~~~~~~~~elt~~~~~~L~~iF~~fd~~~d~~l~~~~l~~~f~~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~w~~~ 325 (514)
T Consensus 168 -------------------------------------------------------------------------------- 167 (435)
T PRK00093 168 -------------------------------------------------------------------------------- 167 (435)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCHHHHHHHHHHhCCCCChhhHHHHhhhhhhhhhhhcccCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCcc
Q 010254 326 TLLDPARSVENLIYIGYPGDPSSAIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDER 405 (514)
Q Consensus 326 ~~~~~~~~~~~l~~~g~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~ 405 (514)
......++|+++|.+|+|||||+|+|++.++..+...+++++
T Consensus 168 --------------------------------------~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~ 209 (435)
T PRK00093 168 --------------------------------------DEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTR 209 (435)
T ss_pred --------------------------------------cccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceE
Confidence 000124899999999999999999999988776665555555
Q ss_pred EEEEEEECCCCcEEEEEEecCCh----------hHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCC
Q 010254 406 YAVNVVDQPGGTKKTVVLREIPE----------EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGED 475 (514)
Q Consensus 406 ~~~~~~~~~~~~~~~~i~dt~g~----------~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~ 475 (514)
..+...... +...+.++||+|. +.|. ...+...++.+|++|+|+|++++.+.+...- ...+...
T Consensus 210 ~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~-~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i-~~~~~~~--- 283 (435)
T PRK00093 210 DSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYS-VIRTLKAIERADVVLLVIDATEGITEQDLRI-AGLALEA--- 283 (435)
T ss_pred EEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHH-HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHH-HHHHHHc---
Confidence 554333223 3455678999994 2222 2223457789999999999999866554432 2222222
Q ss_pred CCCCCcEEEEEeCCCCccc
Q 010254 476 TGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 476 ~~~~~p~ilv~nK~Dl~~~ 494 (514)
++|+++|+||||+...
T Consensus 284 ---~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 284 ---GRALVIVVNKWDLVDE 299 (435)
T ss_pred ---CCcEEEEEECccCCCH
Confidence 6899999999999753
No 6
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=100.00 E-value=4.8e-35 Score=313.07 Aligned_cols=280 Identities=18% Similarity=0.152 Sum_probs=193.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeCCeeEEEEEeCCCCccc--------hhhHHHhh
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYPDRVPITIIDTPSSVED--------RGKLGEEL 84 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~ 84 (514)
-.+|+|+|+||||||||+|+|++.+ .+++...+++|... .....+..+.+|||||++.. ......++
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~--~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRR--EAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC--ceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 4689999999999999999999987 45555567776332 33345678999999998642 22345578
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccc
Q 010254 85 RRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALK 164 (514)
Q Consensus 85 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 164 (514)
+++|++|+|+|++++.+ ..+..|...++.. ++|+|+|+||+|+... ......+. .++ +...++|||++
T Consensus 353 ~~aD~iL~VvDa~~~~~--~~d~~i~~~Lr~~--~~pvIlV~NK~D~~~~------~~~~~~~~-~lg-~~~~~~iSA~~ 420 (712)
T PRK09518 353 SLADAVVFVVDGQVGLT--STDERIVRMLRRA--GKPVVLAVNKIDDQAS------EYDAAEFW-KLG-LGEPYPISAMH 420 (712)
T ss_pred HhCCEEEEEEECCCCCC--HHHHHHHHHHHhc--CCCEEEEEECcccccc------hhhHHHHH-HcC-CCCeEEEECCC
Confidence 99999999999886544 3333488888776 8999999999998643 11111111 122 33678999999
Q ss_pred cccceecCCCCChhhHHHHHHHHHHHhcCcccCCCcchhhHHHHHHHHHhcCCcchhhHHHhhccCCCccccccCCCCCC
Q 010254 165 QIQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLADELIPYS 244 (514)
Q Consensus 165 ~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~~~~~~L~~~~~~~~~~~~~~~~~~~ 244 (514)
|. |+++|++.|.+.++...... ..+
T Consensus 421 g~------------GI~eLl~~i~~~l~~~~~~~----------------------------------------~a~--- 445 (712)
T PRK09518 421 GR------------GVGDLLDEALDSLKVAEKTS----------------------------------------GFL--- 445 (712)
T ss_pred CC------------CchHHHHHHHHhcccccccc----------------------------------------ccc---
Confidence 99 99999998887554310000 000
Q ss_pred CccCCCCCceecChhHHHHHHHHHHhhcCCCCCCCCHHhHHhhhccCCCCCCCCCcccccccccCCCcccHHHHHHHhhh
Q 010254 245 AFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECPWDEAPYKDAAEKTALGGLSLDGFLSEWAL 324 (514)
Q Consensus 245 ~l~~~~~~~~elt~~~~~~L~~iF~~fd~~~d~~l~~~~l~~~f~~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~w~~ 324 (514)
T Consensus 446 -------------------------------------------------------------------------------- 445 (712)
T PRK09518 446 -------------------------------------------------------------------------------- 445 (712)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCHHHHHHHHHHhCCCCChhhHHHHhhhhhhhhhhhcccCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCc
Q 010254 325 MTLLDPARSVENLIYIGYPGDPSSAIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDE 404 (514)
Q Consensus 325 ~~~~~~~~~~~~l~~~g~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~ 404 (514)
.....+||+++|++|||||||+|+|++.++..+...++++
T Consensus 446 ----------------------------------------~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT 485 (712)
T PRK09518 446 ----------------------------------------TPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTT 485 (712)
T ss_pred ----------------------------------------CCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCC
Confidence 0012368999999999999999999999875444333333
Q ss_pred cEEE-EEEECCCCcEEEEEEecCCh----------hHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcC
Q 010254 405 RYAV-NVVDQPGGTKKTVVLREIPE----------EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYG 473 (514)
Q Consensus 405 ~~~~-~~~~~~~~~~~~~i~dt~g~----------~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~ 473 (514)
+..+ ..+.+. +. .+.+|||+|. +.|.. ..+...++.+|++++|+|+++..+++.... +..+...
T Consensus 486 ~d~~~~~~~~~-~~-~~~liDTaG~~~~~~~~~~~e~~~~-~r~~~~i~~advvilViDat~~~s~~~~~i-~~~~~~~- 560 (712)
T PRK09518 486 RDPVDEIVEID-GE-DWLFIDTAGIKRRQHKLTGAEYYSS-LRTQAAIERSELALFLFDASQPISEQDLKV-MSMAVDA- 560 (712)
T ss_pred cCcceeEEEEC-CC-EEEEEECCCcccCcccchhHHHHHH-HHHHHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHHc-
Confidence 3333 334444 33 4558999994 23332 223456789999999999999877776653 3333332
Q ss_pred CCCCCCCcEEEEEeCCCCccc
Q 010254 474 EDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 474 ~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
++|+++|+||||+...
T Consensus 561 -----~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 561 -----GRALVLVFNKWDLMDE 576 (712)
T ss_pred -----CCCEEEEEEchhcCCh
Confidence 6999999999999753
No 7
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=100.00 E-value=5.9e-33 Score=267.72 Aligned_cols=232 Identities=22% Similarity=0.318 Sum_probs=192.9
Q ss_pred ccCCCCCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc---cccceeCCeeEEEEEeCCCCccchhhH-
Q 010254 5 SAANSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR---LPEDFYPDRVPITIIDTPSSVEDRGKL- 80 (514)
Q Consensus 5 ~~~~~~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt---~~~~~~~~~~~~~l~Dt~G~~~~~~~~- 80 (514)
+.++++...++++||+|+|+||||||||+|+|++++ .++++..+||| ++..+..+++++.|+||+|+++..+..
T Consensus 206 ~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d--~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE 283 (454)
T COG0486 206 ATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRD--RAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVE 283 (454)
T ss_pred HhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCC--ceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHH
Confidence 356788999999999999999999999999999999 89999999999 566888999999999999999877654
Q ss_pred -------HHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc
Q 010254 81 -------GEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE 153 (514)
Q Consensus 81 -------~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (514)
...+++||+|++|+|++.+.+-.+.. .+. ....++|+++|.||+|+...... ..+ +...
T Consensus 284 ~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~--~~~---~~~~~~~~i~v~NK~DL~~~~~~-------~~~--~~~~ 349 (454)
T COG0486 284 RIGIERAKKAIEEADLVLFVLDASQPLDKEDLA--LIE---LLPKKKPIIVVLNKADLVSKIEL-------ESE--KLAN 349 (454)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHH--HHH---hcccCCCEEEEEechhccccccc-------chh--hccC
Confidence 45699999999999999864444333 333 22337999999999999876211 111 1112
Q ss_pred cCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCc-ccCCCcchhhHHHHHHHHHhcCCcchhhHHHhhccCCC
Q 010254 154 IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG-VNERGLTLAGFLFLHALFIEKGRLETTWTVLRKFGYNN 232 (514)
Q Consensus 154 ~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~r~~~~~~~L~~~~~~~ 232 (514)
-.+++.+||++|. |++.|.+.|.+.+... .......+.+.||...+ +.+..+|..+....
T Consensus 350 ~~~~i~iSa~t~~------------Gl~~L~~~i~~~~~~~~~~~~~~~i~~~Rh~~~L-------~~a~~~l~~a~~~~ 410 (454)
T COG0486 350 GDAIISISAKTGE------------GLDALREAIKQLFGKGLGNQEGLFLSNLRHIQLL-------EQAAEHLEDALQQL 410 (454)
T ss_pred CCceEEEEecCcc------------CHHHHHHHHHHHHhhcccccccceeecHHHHHHH-------HHHHHHHHHHHhhh
Confidence 1268999999999 9999999999998877 44456788999999999 99999999998777
Q ss_pred ccccccCCCCCCCccCCCCCceecChhHH--HHHHHHHHhhc
Q 010254 233 DIKLADELIPYSAFKRAPDQSVELTNEAI--DFLKGIFELFD 272 (514)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~~elt~~~~--~~L~~iF~~fd 272 (514)
+.+.+.|++++ +++.+.++++++||+.. ++|++||++|.
T Consensus 411 ~~~~~~dl~a~-dLr~A~~~LgeItG~~~~edlLd~IFs~FC 451 (454)
T COG0486 411 ELGQPLDLLAE-DLRLAQEALGEITGEFVSEDLLDEIFSNFC 451 (454)
T ss_pred hccCChhhhHH-HHHHHHHHHHHhhCCCchHHHHHHHHHhcc
Confidence 66667899987 99999999999999987 99999999996
No 8
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.3e-30 Score=218.62 Aligned_cols=143 Identities=20% Similarity=0.340 Sum_probs=133.3
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCc
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 445 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d 445 (514)
.++.+||+++|++|||||+|+.||.++.|...+..|.|+++..+++.++++..+..||||||+|+|+++. .++|++||
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit--~syYR~ah 83 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTIT--SSYYRGAH 83 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhh--HhhccCCC
Confidence 3567999999999999999999999999999999999999999999999777788899999999999887 79999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCc-cc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMV-LY 513 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~ 513 (514)
+||+|||+++.+||+.+..|+.++.++... ++|.++||||+|+.+.+ +..+++++|+.+++++ |+
T Consensus 84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~---~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ 150 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKRWIQEIDRYASE---NVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFL 150 (205)
T ss_pred eEEEEEEcccHHHhhhHHHHHHHhhhhccC---CCCeEEEeeccccHhheecCHHHHHHHHHhcCCccee
Confidence 999999999999999999999999998754 79999999999999887 7889999999999998 54
No 9
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.5e-28 Score=205.54 Aligned_cols=165 Identities=22% Similarity=0.338 Sum_probs=140.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--cccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP--TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~--tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
...+||+++|+.|||||||+-|++.++|.+...++++. .|....+....+++.||||+|++++......|+++|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 45799999999999999999999999998776665554 3344455566799999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
+|||+++.+||..+.. |...+++.. +++-+.|||||+||.+. |.+..++. ..+++.-+. .++|+|||+|.
T Consensus 83 vvYDit~~~SF~~aK~-WvkeL~~~~~~~~vialvGNK~DL~~~-R~V~~~ea-~~yAe~~gl--l~~ETSAKTg~---- 153 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKN-WVKELQRQASPNIVIALVGNKADLLER-REVEFEEA-QAYAESQGL--LFFETSAKTGE---- 153 (200)
T ss_pred EEEecccHHHHHHHHH-HHHHHHhhCCCCeEEEEecchhhhhhc-ccccHHHH-HHHHHhcCC--EEEEEeccccc----
Confidence 9999999999999997 999999875 45667889999999986 77777654 667776554 89999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhcCcc
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLREGV 195 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~~~~ 195 (514)
++++|...|.+.+|...
T Consensus 154 --------Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 154 --------NVNEIFQAIAEKLPCSD 170 (200)
T ss_pred --------CHHHHHHHHHHhccCcc
Confidence 99999999999988654
No 10
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.4e-28 Score=201.75 Aligned_cols=143 Identities=16% Similarity=0.236 Sum_probs=133.4
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+|++++|+.|||||+|+.+|+.+.|.+.+..|.|.+|-...+.+++.+.+..+|||+|+|.|+++. .++|+.+.+
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~--~syYr~a~G 81 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVT--RSYYRGAAG 81 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHH--HHHhccCcc
Confidence 456899999999999999999999999999999999999999999999777788899999999999988 689999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCcccC
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLYK 514 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 514 (514)
++||||++.++||..+..|+.++.+... ++.-++|+|||+||...+ ++.+++++||+++|+.|++
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~---~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmE 147 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSN---ENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFME 147 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcC---CCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeeh
Confidence 9999999999999999999999998863 389999999999999877 8999999999999998863
No 11
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.2e-27 Score=203.09 Aligned_cols=151 Identities=23% Similarity=0.368 Sum_probs=129.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
...-+||+|+|++|||||+|+.||.++.|...+.++++.-. ....+..+.+++.||||+|+++++.....++++|++|
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi 85 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 85 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence 34569999999999999999999999999888776555422 4445667789999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCc-EEEcCccccccc
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIET-CIECSALKQIQV 168 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~Sa~~~~~~ 168 (514)
|+|||+++.+||..+.. |+..++++. .+.|.++||||+|+.+. +.++.++. +.++..++. + ++|+|||.+.|+
T Consensus 86 i~vyDiT~~~SF~~v~~-Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~-~~v~~~~a-~~fa~~~~~--~~f~ETSAK~~~NV 160 (205)
T KOG0084|consen 86 IFVYDITKQESFNNVKR-WIQEIDRYASENVPKLLVGNKCDLTEK-RVVSTEEA-QEFADELGI--PIFLETSAKDSTNV 160 (205)
T ss_pred EEEEEcccHHHhhhHHH-HHHHhhhhccCCCCeEEEeeccccHhh-eecCHHHH-HHHHHhcCC--cceeecccCCccCH
Confidence 99999999999999997 999999986 56799999999999987 66666544 667777764 5 999999999943
No 12
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.8e-27 Score=205.55 Aligned_cols=144 Identities=15% Similarity=0.255 Sum_probs=134.3
Q ss_pred ccCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccC
Q 010254 365 AERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAAC 444 (514)
Q Consensus 365 ~~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~ 444 (514)
..+..+||+++|++|||||+++.+|..+.|...+..|.|.+|.++++.+++......+|||+|+++|..+. ..++++|
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~--~sYyrgA 85 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTIT--TAYYRGA 85 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHH--HHHHhhc
Confidence 34677999999999999999999999999999999999999999999999666677799999999999988 6899999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 445 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 445 d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+++++|||+++..||+.+..|+..+....+. ++|.+|||||+|+..++ ++.+.++++|.++|+.|+
T Consensus 86 ~gi~LvyDitne~Sfeni~~W~~~I~e~a~~---~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~ 152 (207)
T KOG0078|consen 86 MGILLVYDITNEKSFENIRNWIKNIDEHASD---DVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFF 152 (207)
T ss_pred CeeEEEEEccchHHHHHHHHHHHHHHhhCCC---CCcEEEeeccccccccccccHHHHHHHHHHhCCeEE
Confidence 9999999999999999999999999998754 79999999999999877 789999999999999987
No 13
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=8.9e-28 Score=195.21 Aligned_cols=143 Identities=18% Similarity=0.245 Sum_probs=131.0
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+||++||.+|||||||+-+|..+.|.+..+.++|++|.++.+.++++..+.-||||||+|+|+.+. +.+|++|.+
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLT--pSyyRgaqG 86 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLT--PSYYRGAQG 86 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccC--HhHhccCce
Confidence 356999999999999999999999999999998889999999999999666677799999999999887 799999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+|+|||++.+++|..++.|+.++..+... +++-.++||||+|...++ +..+++.+||+++++.|+
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn--~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFi 152 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTN--PDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFI 152 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCC--ccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEE
Confidence 99999999999999999999999988754 378889999999988766 789999999999999875
No 14
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=1.7e-27 Score=198.91 Aligned_cols=145 Identities=17% Similarity=0.248 Sum_probs=130.0
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|++|||||||+|+|...+|...+..|++.+|..+.+.+++......||||+|+|+|+++. ...|+++|.
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg--~aFYRgaDc 84 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLG--VAFYRGADC 84 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcc--cceecCCce
Confidence 567999999999999999999999999999999999999999999999666677799999999999987 689999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCCCCcEEEEEeCCCCcc---cccchhhHHHHHHHcC-Cccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGE-DTGFEVPCLIVAAKDDLDS---FAMAIQDSTRVFTFLV-MVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~ 513 (514)
+++|||++++.||+.+..|..++..+.. ...+..|+||+|||+|+.. ..++...+++||++.| +|||
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyf 156 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYF 156 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeE
Confidence 9999999999999999999999777655 3346899999999999976 3378899999999875 7776
No 15
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6e-27 Score=197.68 Aligned_cols=167 Identities=22% Similarity=0.293 Sum_probs=140.6
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccC
Q 010254 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRAD 88 (514)
Q Consensus 11 ~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad 88 (514)
..+.+.+||+++|+.+|||||||+|++...|...+..+++.-- ....+....+++.||||+|+|++...+..|+++++
T Consensus 17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 3455669999999999999999999999999888776554422 22233455789999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcC-C-CCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccc
Q 010254 89 AVVLTYACDRPETLDELSTFWLPELRRLE-V-KVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (514)
Q Consensus 89 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~ 166 (514)
++|+|||+++..||++..+ |++.+++.. . +.-++|||||.||.+. |+.+.++. +..+++++. .++++||+.|.
T Consensus 97 vaviVyDit~~~Sfe~t~k-Wi~dv~~e~gs~~viI~LVGnKtDL~dk-rqvs~eEg-~~kAkel~a--~f~etsak~g~ 171 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSK-WIEDVRRERGSDDVIIFLVGNKTDLSDK-RQVSIEEG-ERKAKELNA--EFIETSAKAGE 171 (221)
T ss_pred EEEEEEeccccchHHHHHH-HHHHHHhccCCCceEEEEEcccccccch-hhhhHHHH-HHHHHHhCc--EEEEecccCCC
Confidence 9999999999999999996 999998874 2 4778999999999998 77777765 466777765 79999999999
Q ss_pred cceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
++..|...|...+|..
T Consensus 172 ------------NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 172 ------------NVKQLFRRIAAALPGM 187 (221)
T ss_pred ------------CHHHHHHHHHHhccCc
Confidence 8889999998888765
No 16
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7.2e-27 Score=197.22 Aligned_cols=141 Identities=18% Similarity=0.297 Sum_probs=130.2
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.+|++++|+.+|||||||+||+.+.|...|.+|+|.+|..+++.+.+......+|||||+|+|+++. +.+++++.++|
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrsli--psY~Rds~vav 99 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--PSYIRDSSVAV 99 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhh--hhhccCCeEEE
Confidence 3899999999999999999999999999999999999999999999677777899999999999998 79999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+|||+++..||+....|+..+....... ++-++|||||.||.+++ +..++++..|+++++.|+
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~--~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~ 163 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRRERGSD--DVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFI 163 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHhccCCC--ceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEE
Confidence 9999999999999999999998876542 48899999999999887 678899999999998764
No 17
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.94 E-value=2.2e-27 Score=238.64 Aligned_cols=229 Identities=20% Similarity=0.240 Sum_probs=168.5
Q ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccchhh-------
Q 010254 10 GPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRGK------- 79 (514)
Q Consensus 10 ~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~~------- 79 (514)
+...+.+++|+|+|+||||||||+|+|++.. .++++..++||.. ..+..++.++.+|||||+++..+.
T Consensus 197 ~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~--~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~ 274 (442)
T TIGR00450 197 LEKLDDGFKLAIVGSPNVGKSSLLNALLKQD--RAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIE 274 (442)
T ss_pred HHHhhcCCEEEEECCCCCcHHHHHHHHhCCC--CcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHH
Confidence 3556788999999999999999999999986 4555666777743 345566889999999999765432
Q ss_pred -HHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEE
Q 010254 80 -LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCI 158 (514)
Q Consensus 80 -~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (514)
...+++++|++++|+|++++.+++.. |+..+... ++|+++|+||+|+... . ...+.+.++. +++
T Consensus 275 ~~~~~~~~aD~il~V~D~s~~~s~~~~---~l~~~~~~--~~piIlV~NK~Dl~~~----~----~~~~~~~~~~--~~~ 339 (442)
T TIGR00450 275 KSFKAIKQADLVIYVLDASQPLTKDDF---LIIDLNKS--KKPFILVLNKIDLKIN----S----LEFFVSSKVL--NSS 339 (442)
T ss_pred HHHHHHhhCCEEEEEEECCCCCChhHH---HHHHHhhC--CCCEEEEEECccCCCc----c----hhhhhhhcCC--ceE
Confidence 23578999999999999988876654 66655543 7899999999999643 1 1223333332 689
Q ss_pred EcCccccccceecCCCCChhhHHHHHHHHHHHhcCccc-CCCcchhhHHHHHHHHHhcCCcchhhHHHhhccCCCccccc
Q 010254 159 ECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREGVN-ERGLTLAGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLA 237 (514)
Q Consensus 159 ~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~r~~~~~~~L~~~~~~~~~~~~ 237 (514)
++||+++ |++ ++++.|.+.+.+.+..... .......+.|+...+ +++...|..+......+.+
T Consensus 340 ~vSak~~-gI~--------~~~~~L~~~i~~~~~~~~~~~~~~~~~~~r~~~~l-------~~a~~~l~~~~~~~~~~~~ 403 (442)
T TIGR00450 340 NLSAKQL-KIK--------ALVDLLTQKINAFYSKERVELDDYLISSWQAMILL-------EKAIAQLQQFLSKLDRQLF 403 (442)
T ss_pred EEEEecC-CHH--------HHHHHHHHHHHHHhcccccccccceEhHHHHHHHH-------HHHHHHHHHHHHHHHcCCc
Confidence 9999983 221 1455555555544432111 234566788999999 8888888877655444566
Q ss_pred cCCCCCCCccCCCCCceecChhHH--HHHHHHHHhhc
Q 010254 238 DELIPYSAFKRAPDQSVELTNEAI--DFLKGIFELFD 272 (514)
Q Consensus 238 ~~~~~~~~l~~~~~~~~elt~~~~--~~L~~iF~~fd 272 (514)
.|++++ +++.+..+++++||... ++|++||++|.
T Consensus 404 ~el~a~-~l~~a~~~l~~itG~~~~ediLd~iFs~FC 439 (442)
T TIGR00450 404 LDMLVF-HLREAINCLGQVTGEVVTEDVLDEIFSNFC 439 (442)
T ss_pred HHHHHH-HHHHHHHHHHHHhCCCCcHHHHHHHHhcCC
Confidence 788877 99999999999999877 99999999996
No 18
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=4.2e-27 Score=188.46 Aligned_cols=139 Identities=21% Similarity=0.317 Sum_probs=129.2
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.+|.+|+|+||||||||+.+|....|+..|..|+|.++.++++++++...+..||||+|+|+|+.+. ..++++.|++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtit--styyrgthgv~ 85 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTIT--STYYRGTHGVI 85 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHH--HHHccCCceEE
Confidence 3678999999999999999999999999999999999999999999777788899999999999888 57899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+|||+++.+||.+..+|++++..... .+|-|+||||.|+...+ +..++++.||.++|+.+|
T Consensus 86 vVYDVTn~ESF~Nv~rWLeei~~ncd----sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~F 147 (198)
T KOG0079|consen 86 VVYDVTNGESFNNVKRWLEEIRNNCD----SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELF 147 (198)
T ss_pred EEEECcchhhhHhHHHHHHHHHhcCc----cccceecccCCCCccceeeehHHHHHHHHhcCchhe
Confidence 99999999999999999999998873 79999999999998877 678999999999999877
No 19
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.94 E-value=1.9e-27 Score=240.74 Aligned_cols=224 Identities=26% Similarity=0.307 Sum_probs=172.3
Q ss_pred CCCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccchhh------
Q 010254 9 SGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRGK------ 79 (514)
Q Consensus 9 ~~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~~------ 79 (514)
++...+.+++|+|+|.||||||||+|+|++.+ .++++..++||.. ..+..++.++.+|||||++++...
T Consensus 208 ~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~--~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi 285 (449)
T PRK05291 208 QGEILREGLKVVIAGRPNVGKSSLLNALLGEE--RAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGI 285 (449)
T ss_pred HHHHhhcCCEEEEECCCCCCHHHHHHHHhCCC--CcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHH
Confidence 34455678999999999999999999999987 4445556666633 345556789999999999765432
Q ss_pred --HHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcE
Q 010254 80 --LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETC 157 (514)
Q Consensus 80 --~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (514)
...+++++|++++|+|++++.++++... |.. ..++|+++|+||+|+... .... .. ...++
T Consensus 286 ~~~~~~~~~aD~il~VvD~s~~~s~~~~~~-l~~-----~~~~piiiV~NK~DL~~~-~~~~---------~~--~~~~~ 347 (449)
T PRK05291 286 ERSREAIEEADLVLLVLDASEPLTEEDDEI-LEE-----LKDKPVIVVLNKADLTGE-IDLE---------EE--NGKPV 347 (449)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCChhHHHH-HHh-----cCCCCcEEEEEhhhcccc-chhh---------hc--cCCce
Confidence 2346889999999999998887765432 332 337899999999999764 1111 11 11278
Q ss_pred EEcCccccccceecCCCCChhhHHHHHHHHHHHhcCcc--cCCCcchhhHHHHHHHHHhcCCcchhhHHHhhccCCCccc
Q 010254 158 IECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREGV--NERGLTLAGFLFLHALFIEKGRLETTWTVLRKFGYNNDIK 235 (514)
Q Consensus 158 i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~r~~~~~~~L~~~~~~~~~~ 235 (514)
+++||++|. |+++|++.|.+.++... ......+.+.++.+.+ ++++..|..+......+
T Consensus 348 i~iSAktg~------------GI~~L~~~L~~~l~~~~~~~~~~~~~~~~R~~~~l-------~~a~~~l~~~~~~~~~~ 408 (449)
T PRK05291 348 IRISAKTGE------------GIDELREAIKELAFGGFGGNQEGVFLTNARHLEAL-------ERALEHLERALEGLESG 408 (449)
T ss_pred EEEEeeCCC------------CHHHHHHHHHHHHhhccccccccceehHHHHHHHH-------HHHHHHHHHHHHHHHcC
Confidence 999999999 99999999998886532 2344567788999999 89999998876554445
Q ss_pred cccCCCCCCCccCCCCCceecChhHH--HHHHHHHHhhc
Q 010254 236 LADELIPYSAFKRAPDQSVELTNEAI--DFLKGIFELFD 272 (514)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~~elt~~~~--~~L~~iF~~fd 272 (514)
.+.|++++ +|+.+..++++++|... ++|++||++|.
T Consensus 409 ~~~~~~a~-~l~~a~~~l~~i~G~~~~e~iLd~iF~~FC 446 (449)
T PRK05291 409 LPLELLAE-DLRLALEALGEITGEVTSEDLLDRIFSSFC 446 (449)
T ss_pred CcHHHHHH-HHHHHHHHHHHHhCCCChHHHHHHHHHhCC
Confidence 66788876 99999999999999866 99999999996
No 20
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.1e-26 Score=199.18 Aligned_cols=143 Identities=19% Similarity=0.259 Sum_probs=133.4
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCc
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 445 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d 445 (514)
.++.+||+++|+++||||-|+.||..++|...+.+|+|..+....+.+++...+..||||+|+|+|+.+. ..+|++|.
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAit--SaYYrgAv 88 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAIT--SAYYRGAV 88 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhcccc--chhhcccc
Confidence 4678999999999999999999999999999999999999999999999777788899999999999877 68999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++++|||++.+.+|+.+.+|+.+++..... ++++++||||+||.+-+ +..++++.+|++.++.|+
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~---nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~ 154 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADS---NIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFL 154 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCC---CeEEEEeecchhhhhccccchhhhHhHHHhcCceEE
Confidence 999999999999999999999999988754 89999999999999876 789999999999998875
No 21
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.7e-26 Score=195.35 Aligned_cols=141 Identities=20% Similarity=0.277 Sum_probs=130.3
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+|++++|+.+||||||+-||..+.|.....+|+|.-|..+++.+++...++.||||+|+|+|.++. +.+|++|+++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~sla--pMYyRgA~AA 81 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLA--PMYYRGANAA 81 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccc--cceecCCcEE
Confidence 35899999999999999999999999998878999999999999999777888899999999999887 8999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
|+|||+++.+||..+..|+.++.+..+ +++-+.|||||+||...+ +..++++.||++.|+.||
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~~---~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ 145 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQAS---PNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFF 145 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhCC---CCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEE
Confidence 999999999999999999999988764 367788899999999865 889999999999999886
No 22
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.94 E-value=8.7e-26 Score=200.27 Aligned_cols=161 Identities=23% Similarity=0.393 Sum_probs=128.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEe
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 95 (514)
+||+++|++|||||||+.+++.+.|...+.++.+... ....+....+.+.||||+|.+++......+++.+|++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 6899999999999999999999998766555443322 233445567899999999999999988899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc---------cchhHhhhhHHHHHHHhccCcEEEcCccccc
Q 010254 96 CDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN---------QQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (514)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~ 166 (514)
++++.||+.+...|++.+++..++.|++|||||+|+.+.. +.++ .+....+++.++. .+++||||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~-~~~~~~~a~~~~~-~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPIT-TAQGEELRKQIGA-AAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCC-HHHHHHHHHHcCC-CEEEECCCCccc
Confidence 9999999998545999998776789999999999996541 1133 3344567766653 258999999999
Q ss_pred cceecCCCCChhhHHHHHHHHHHHh
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++.+.+.+.+
T Consensus 160 ------------nV~~~F~~~~~~~ 172 (176)
T cd04133 160 ------------NVKAVFDAAIKVV 172 (176)
T ss_pred ------------CHHHHHHHHHHHH
Confidence 8888888877654
No 23
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.94 E-value=1.1e-25 Score=201.01 Aligned_cols=162 Identities=28% Similarity=0.426 Sum_probs=129.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-cccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~-tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
...+||+++|++|||||||+++++.+.|...+.++... .+....++...+.+.||||+|.+++......+++++|++|+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 45789999999999999999999999887665544432 22344555667899999999999998888889999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc-----------ccchhHhhhhHHHHHHHhccCcEEEcC
Q 010254 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE-----------NQQVSLEQVMMPIMQQFREIETCIECS 161 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~~S 161 (514)
|||++++.+|+.+...|.+.+++..++.|++||+||+|+.+. .+.++. +..+.++++++.. +++|||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~-~~~~~~a~~~~~~-~~~E~S 160 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSY-DQGANMAKQIGAA-TYIECS 160 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCH-HHHHHHHHHcCCC-EEEECC
Confidence 999999999999855699999988788999999999998642 122333 3457788887632 799999
Q ss_pred ccccccceecCCCCChhh-HHHHHHHHHH
Q 010254 162 ALKQIQVKCFNSPLQPSE-IVGVKRVVQE 189 (514)
Q Consensus 162 a~~~~~~~~f~~~l~~~~-i~~L~~~i~~ 189 (514)
|++|. | ++++.+.+..
T Consensus 161 Ak~~~------------n~v~~~F~~~~~ 177 (182)
T cd04172 161 ALQSE------------NSVRDIFHVATL 177 (182)
T ss_pred cCCCC------------CCHHHHHHHHHH
Confidence 99999 6 7776665544
No 24
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=1.8e-25 Score=197.77 Aligned_cols=163 Identities=52% Similarity=0.885 Sum_probs=130.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeC
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYAC 96 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~ 96 (514)
+||+|+|++|||||||+|+|.++++...+++..+.+++...+....+.+.+|||||.+.+...+..+++.+|++++|||+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999999986555554455555556666788999999999988777777788999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCCCCC
Q 010254 97 DRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNSPLQ 176 (514)
Q Consensus 97 ~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~l~ 176 (514)
+++.+++.+...|++.++...++.|+++|+||+|+.+.......++....+...+....++++|||+++.
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~---------- 150 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLI---------- 150 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEecccccc----------
Confidence 9999999987679998887666899999999999976522112233444455555544479999999999
Q ss_pred hhhHHHHHHHHHHHh
Q 010254 177 PSEIVGVKRVVQEKL 191 (514)
Q Consensus 177 ~~~i~~L~~~i~~~~ 191 (514)
|++++.+.+.+.+
T Consensus 151 --~v~~lf~~~~~~~ 163 (166)
T cd01893 151 --NVSEVFYYAQKAV 163 (166)
T ss_pred --CHHHHHHHHHHHh
Confidence 9999988877644
No 25
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.5e-26 Score=181.52 Aligned_cols=143 Identities=15% Similarity=0.286 Sum_probs=131.6
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+|++|+|.+.||||||+.++++..|.+.+..|.|.+|.++++.-.+...+..+|||+|+|+|+.+. -.+++++++
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiT--TayyRgamg 96 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTIT--TAYYRGAMG 96 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHH--HHHhhccce
Confidence 456899999999999999999999999999999999999999999887677778899999999999887 578999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCcccC
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLYK 514 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 514 (514)
+||+||+++.+||..+..|...|..++-. +.|+|+||||+|+..++ ++.+.++.+++++|+.||.
T Consensus 97 fiLmyDitNeeSf~svqdw~tqIktysw~---naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFE 162 (193)
T KOG0093|consen 97 FILMYDITNEESFNSVQDWITQIKTYSWD---NAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFE 162 (193)
T ss_pred EEEEEecCCHHHHHHHHHHHHHheeeecc---CceEEEEecccCCccceeeeHHHHHHHHHHhChHHhh
Confidence 99999999999999999999999888643 89999999999999988 6788999999999999873
No 26
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.6e-25 Score=193.41 Aligned_cols=152 Identities=20% Similarity=0.324 Sum_probs=128.5
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCE
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ 89 (514)
.....+||+++|++|||||+|+-+|....|.....++.+.-- ..+..+...+.+.+|||+|++++.....+|++.|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 455679999999999999999999999987665544332211 222334567889999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCC-CCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccc
Q 010254 90 VVLTYACDRPETLDELSTFWLPELRRLEV-KVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (514)
Q Consensus 90 ii~v~d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~ 168 (514)
+++|||+++..+|+++.. |+..+.+..+ +.|++|||||+|+... |.++.+. -++++.+++. .++|+||++|.|+
T Consensus 88 i~LvyDitne~Sfeni~~-W~~~I~e~a~~~v~~~LvGNK~D~~~~-R~V~~e~-ge~lA~e~G~--~F~EtSAk~~~NI 162 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRN-WIKNIDEHASDDVVKILVGNKCDLEEK-RQVSKER-GEALAREYGI--KFFETSAKTNFNI 162 (207)
T ss_pred eEEEEEccchHHHHHHHH-HHHHHHhhCCCCCcEEEeecccccccc-ccccHHH-HHHHHHHhCC--eEEEccccCCCCH
Confidence 999999999999999998 9999999864 7999999999999986 7777764 4789999975 8999999999954
No 27
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.93 E-value=1.4e-25 Score=202.88 Aligned_cols=166 Identities=20% Similarity=0.342 Sum_probs=129.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t-t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
|..+||+++|++|||||||+++++.+.|...+.++.... .....++...+.+.||||+|++++......+++++|++|+
T Consensus 1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 356999999999999999999999998866554443321 1223345567889999999999999888889999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccc----------hhHhhhhHHHHHHHhccCcEEEcCc
Q 010254 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQ----------VSLEQVMMPIMQQFREIETCIECSA 162 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~~Sa 162 (514)
|||++++.+++.+...|.+.+....++.|++||+||+||.+.... ....+....+++.++.. ++++|||
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~-~~~e~SA 159 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAV-KYLECSA 159 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCc-EEEEeCC
Confidence 999999999999976699888776678999999999999654110 01122345566665522 7999999
Q ss_pred cccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 163 LKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 163 ~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
++|. |++++.+.+.+.+-
T Consensus 160 k~g~------------~v~e~f~~l~~~~~ 177 (191)
T cd01875 160 LNQD------------GVKEVFAEAVRAVL 177 (191)
T ss_pred CCCC------------CHHHHHHHHHHHHh
Confidence 9999 88888888877553
No 28
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.93 E-value=8.5e-26 Score=183.71 Aligned_cols=166 Identities=27% Similarity=0.378 Sum_probs=132.1
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccC
Q 010254 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRAD 88 (514)
Q Consensus 11 ~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad 88 (514)
+.....+||+|+|++|||||||+-+|+...|....+.+++--- ....++....++.||||+|+++++.....|+++|.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 3455679999999999999999999999887554433222111 22244566889999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccc
Q 010254 89 AVVLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (514)
Q Consensus 89 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~ 166 (514)
++|+|||++.+++|..++. |+..+..++ +++-.++|+||+|..++ |.++.++. ..+++++.+ -++||||++..
T Consensus 86 GiIlVYDVT~Rdtf~kLd~-W~~Eld~Ystn~diikmlVgNKiDkes~-R~V~reEG-~kfAr~h~~--LFiE~SAkt~~ 160 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDI-WLKELDLYSTNPDIIKMLVGNKIDKESE-RVVDREEG-LKFARKHRC--LFIECSAKTRE 160 (209)
T ss_pred eeEEEEEccchhhHHhHHH-HHHHHHhhcCCccHhHhhhcccccchhc-ccccHHHH-HHHHHhhCc--EEEEcchhhhc
Confidence 9999999999999999975 999999885 56778999999998765 77776655 568888877 68999999999
Q ss_pred cceecCCCCChhhHHHHHHHHHH
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~ 189 (514)
+|.| ..++|.+.|.+
T Consensus 161 ~V~~--------~FeelveKIi~ 175 (209)
T KOG0080|consen 161 NVQC--------CFEELVEKIIE 175 (209)
T ss_pred cHHH--------HHHHHHHHHhc
Confidence 7733 34555555554
No 29
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=2.1e-25 Score=198.76 Aligned_cols=160 Identities=28% Similarity=0.408 Sum_probs=125.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-cccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~-tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
++||+++|++|||||||+++++++.|...+.++... ......+....+.+.||||+|.+.+......+++.+|++|+||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 479999999999999999999999886655443321 1223344566788999999999988888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc-----------ccchhHhhhhHHHHHHHhccCcEEEcCcc
Q 010254 95 ACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE-----------NQQVSLEQVMMPIMQQFREIETCIECSAL 163 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 163 (514)
|++++.+|+++...|.+.+++..++.|++||+||+||.++ .+.++.+ ....+++.++.. +++||||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~-e~~~~a~~~~~~-~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYE-QGCAIAKQLGAE-IYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHH-HHHHHHHHhCCC-EEEECccC
Confidence 9999999999754599999988788999999999999642 1223333 456777777632 68999999
Q ss_pred ccccceecCCCCChhh-HHHHHHHHHH
Q 010254 164 KQIQVKCFNSPLQPSE-IVGVKRVVQE 189 (514)
Q Consensus 164 ~~~~~~~f~~~l~~~~-i~~L~~~i~~ 189 (514)
+|. + ++++...+..
T Consensus 159 ~~~------------~~v~~~F~~~~~ 173 (178)
T cd04131 159 TSE------------KSVRDIFHVATM 173 (178)
T ss_pred cCC------------cCHHHHHHHHHH
Confidence 998 4 6666665554
No 30
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.8e-25 Score=187.15 Aligned_cols=149 Identities=21% Similarity=0.292 Sum_probs=126.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
..+|++|+|+.|||||+|+-+++..+|......+.+.-- ..+.++.+.++++||||+|++.+.+....|++.|-++|+
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL 84 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL 84 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence 468999999999999999999999998665543222211 333556778999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccc
Q 010254 93 TYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~ 168 (514)
|||++.+++|..+.. |+..+++.. ++..++|++||+||... |.++.+ +-++++++.+. .++++||+++.++
T Consensus 85 Vydit~r~sF~hL~~-wL~D~rq~~~~NmvImLiGNKsDL~~r-R~Vs~E-EGeaFA~ehgL--ifmETSakt~~~V 156 (216)
T KOG0098|consen 85 VYDITRRESFNHLTS-WLEDARQHSNENMVIMLIGNKSDLEAR-REVSKE-EGEAFAREHGL--IFMETSAKTAENV 156 (216)
T ss_pred EEEccchhhHHHHHH-HHHHHHHhcCCCcEEEEEcchhhhhcc-ccccHH-HHHHHHHHcCc--eeehhhhhhhhhH
Confidence 999999999999997 999999984 89999999999999887 666655 45889999765 6889999999944
No 31
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.93 E-value=7.8e-26 Score=188.97 Aligned_cols=152 Identities=22% Similarity=0.329 Sum_probs=127.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--cccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP--TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~--tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
+.-+||+|+|++|||||||+|++++.+|...+-.+++. .|.++.++...+.+.||||+|++++...-..+++.||.++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 44599999999999999999999999987665544432 4466667777889999999999999999899999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEecccCcccc-cchhHhhhhHHHHHHHhccCcEEEcCcccc
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLE-----VKVPVIVVGCKLDLRDEN-QQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~ 165 (514)
+|||++++.+|+.+.. |.+.+.... ...|+||+|||+|+.... |.++.. ..+.++...+++ |+||+|||.+
T Consensus 87 lvydv~~~~Sfe~L~~-Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~-~Aq~WC~s~gni-pyfEtSAK~~ 163 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLEN-WRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEK-KAQTWCKSKGNI-PYFETSAKEA 163 (210)
T ss_pred EEeecCChhhhccHHH-HHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHH-HHHHHHHhcCCc-eeEEeccccc
Confidence 9999999999999997 988876653 358999999999998743 556555 557788888766 9999999999
Q ss_pred ccc
Q 010254 166 IQV 168 (514)
Q Consensus 166 ~~~ 168 (514)
.||
T Consensus 164 ~NV 166 (210)
T KOG0394|consen 164 TNV 166 (210)
T ss_pred ccH
Confidence 944
No 32
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.93 E-value=3.7e-25 Score=198.48 Aligned_cols=160 Identities=18% Similarity=0.217 Sum_probs=128.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT--RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t--t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
..+||+++|++|||||||+.+|.+..+...+.+..+.. +....+....+.+.+|||+|.+++...+..+++.+|++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 45999999999999999999999987754443322111 1223344556889999999999999888899999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecC
Q 010254 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFN 172 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~ 172 (514)
|||++++.+++.+.. |++.+.+..++.|+|||+||+|+... +.++.+ ..+.+++..+. ++++|||++|.
T Consensus 85 VfD~t~~~Sf~~~~~-w~~~i~~~~~~~piilVGNK~DL~~~-~~v~~~-~~~~~a~~~~~--~~~e~SAk~g~------ 153 (189)
T cd04121 85 VYDITNRWSFDGIDR-WIKEIDEHAPGVPKILVGNRLHLAFK-RQVATE-QAQAYAERNGM--TFFEVSPLCNF------ 153 (189)
T ss_pred EEECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECccchhc-cCCCHH-HHHHHHHHcCC--EEEEecCCCCC------
Confidence 999999999999975 99999887778999999999999765 445444 45677777654 89999999999
Q ss_pred CCCChhhHHHHHHHHHHHh
Q 010254 173 SPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 173 ~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++.+.+.+.+
T Consensus 154 ------~V~~~F~~l~~~i 166 (189)
T cd04121 154 ------NITESFTELARIV 166 (189)
T ss_pred ------CHHHHHHHHHHHH
Confidence 8888887777644
No 33
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.93 E-value=4.4e-25 Score=196.64 Aligned_cols=159 Identities=19% Similarity=0.392 Sum_probs=123.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-cccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEe
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~-tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 95 (514)
+||+|+|++|||||||+++|+++.|...+.++.+. ......+....+.+.||||+|.+++......+++.+|++|+|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 79999999999999999999999886555444322 11223344456889999999999988888889999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc-----------cchhHhhhhHHHHHHHhccCcEEEcCccc
Q 010254 96 CDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIECSALK 164 (514)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 164 (514)
++++.+++.+...|...++...++.|+|||+||+|+.+.. +.+.. +....+++.++.. .+++|||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~-~~~~~~a~~~~~~-~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITP-ETGEKLARDLKAV-KYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCH-HHHHHHHHHhCCc-EEEEecCCC
Confidence 9999999999766999988776789999999999986541 12222 2334455555422 799999999
Q ss_pred cccceecCCCCChhhHHHHHHHHHH
Q 010254 165 QIQVKCFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 165 ~~~~~~f~~~l~~~~i~~L~~~i~~ 189 (514)
|. |++++.+.+..
T Consensus 160 g~------------~v~~~f~~~~~ 172 (175)
T cd01874 160 QK------------GLKNVFDEAIL 172 (175)
T ss_pred CC------------CHHHHHHHHHH
Confidence 99 88888877664
No 34
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.93 E-value=7.2e-25 Score=198.43 Aligned_cols=159 Identities=20% Similarity=0.339 Sum_probs=124.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
+.|+++|++|||||||++++..+.|...+.++.+... ....+....+.+.+|||+|.+.+...+..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 4699999999999999999999988665544332111 22344455689999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCC
Q 010254 95 ACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNS 173 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~ 173 (514)
|++++.+++.+.. |+..+++.. ++.|+++|+||+|+... +.+..+ ....+++++... .+++|||++|.
T Consensus 81 Dvtd~~Sf~~l~~-w~~~i~~~~~~~~piilVgNK~DL~~~-~~v~~~-~~~~~a~~~~~~-~~~etSAktg~------- 149 (202)
T cd04120 81 DITKKETFDDLPK-WMKMIDKYASEDAELLLVGNKLDCETD-REISRQ-QGEKFAQQITGM-RFCEASAKDNF------- 149 (202)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECcccccc-cccCHH-HHHHHHHhcCCC-EEEEecCCCCC-------
Confidence 9999999999976 999887764 57999999999999764 444433 234555554222 79999999999
Q ss_pred CCChhhHHHHHHHHHHHh
Q 010254 174 PLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 174 ~l~~~~i~~L~~~i~~~~ 191 (514)
|++++.+.+.+.+
T Consensus 150 -----gV~e~F~~l~~~~ 162 (202)
T cd04120 150 -----NVDEIFLKLVDDI 162 (202)
T ss_pred -----CHHHHHHHHHHHH
Confidence 8888887777654
No 35
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=1.3e-24 Score=200.01 Aligned_cols=164 Identities=24% Similarity=0.358 Sum_probs=128.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLP-PTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~-~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
..+||+++|++|||||||+++|+++.|...+.++.. ..+....+....+.+.||||+|.+.+......++++||++|+|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 468999999999999999999999988766554432 2223344556678999999999999988888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc-----------ccchhHhhhhHHHHHHHhccCcEEEcCc
Q 010254 94 YACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE-----------NQQVSLEQVMMPIMQQFREIETCIECSA 162 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 162 (514)
||++++.+|+.+...|++.+++..++.|+|||+||+|+... .+.++.+ ..+.++++++.. .++||||
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~-e~~~~a~~~~~~-~~~EtSA 169 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYE-QGCALAKQLGAE-VYLECSA 169 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHH-HHHHHHHHcCCC-EEEEccC
Confidence 99999999998644599999887778999999999998642 1334443 456788877632 5899999
Q ss_pred cccccceecCCCCChhhHHHHHHHHHHHh
Q 010254 163 LKQIQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 163 ~~~~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
++|.+ |++++...+...+
T Consensus 170 ktg~~-----------~V~e~F~~~~~~~ 187 (232)
T cd04174 170 FTSEK-----------SIHSIFRSASLLC 187 (232)
T ss_pred CcCCc-----------CHHHHHHHHHHHH
Confidence 99961 4666666655443
No 36
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2e-25 Score=179.80 Aligned_cols=142 Identities=20% Similarity=0.313 Sum_probs=130.0
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCc
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 445 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d 445 (514)
.+..+|++++|+.|+|||+|+++|+.+++.+.+..+.|.+|..+.+.+.++..+..||||+|+|+|+++. +.+|++|-
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVt--RsYYRGAA 83 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVT--RSYYRGAA 83 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHH--HHHhcccc
Confidence 4566899999999999999999999999999999999999999999999666777899999999999988 78999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCcc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVL 512 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~ 512 (514)
+.++|||+++++||+.+..|+.+++...+ +++-++++|||.||..++ +...++.+||++..+.|
T Consensus 84 GAlLVYD~TsrdsfnaLtnWL~DaR~lAs---~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~f 148 (214)
T KOG0086|consen 84 GALLVYDITSRDSFNALTNWLTDARTLAS---PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMF 148 (214)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHhhCC---CcEEEEEeCChhhcChhhhhhHHHHHhhhcccceee
Confidence 99999999999999999999999988764 378899999999999877 78899999999887754
No 37
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.93 E-value=9.6e-25 Score=194.26 Aligned_cols=159 Identities=22% Similarity=0.398 Sum_probs=125.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEe
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t-t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 95 (514)
+||+|+|++|||||||+.+++++.+...+.++.... .....+....+.+.||||||.+.+......+++++|++|+|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 799999999999999999999988866554433221 2233444556889999999999888888889999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc-----------cchhHhhhhHHHHHHHhccCcEEEcCccc
Q 010254 96 CDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIECSALK 164 (514)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 164 (514)
++++.+++.+...|+..+....++.|++||+||+|+.+.. +.+. .+....++++++.. ++++|||++
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~-~~~e~Sa~~ 159 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPIT-YPQGLAMAKEIGAV-KYLECSALT 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCC-HHHHHHHHHHcCCc-EEEEecccc
Confidence 9999999999766988887766789999999999996531 1122 23345567666533 789999999
Q ss_pred cccceecCCCCChhhHHHHHHHHHH
Q 010254 165 QIQVKCFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 165 ~~~~~~f~~~l~~~~i~~L~~~i~~ 189 (514)
|. |++++.+.+.+
T Consensus 160 ~~------------~i~~~f~~l~~ 172 (174)
T cd01871 160 QK------------GLKTVFDEAIR 172 (174)
T ss_pred cC------------CHHHHHHHHHH
Confidence 99 88888887764
No 38
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.92 E-value=1.9e-24 Score=192.03 Aligned_cols=160 Identities=21% Similarity=0.346 Sum_probs=126.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-cccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~-tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
.+||+|+|++|||||||++++.++++...+.++.+. ......+....+.+.||||||.+++...+..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 489999999999999999999999886554443332 1123344455678999999999999888899999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecC
Q 010254 95 ACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFN 172 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~ 172 (514)
|++++.+++.+.. |...+.+. .+++|+++|+||+|+... +.++.++ ...+++.++. ++++|||++|.
T Consensus 82 d~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilvgNK~Dl~~~-~~v~~~~-~~~~a~~~~~--~~~e~Sa~~~~------ 150 (172)
T cd04141 82 SVTDRHSFQEASE-FKKLITRVRLTEDIPLVLVGNKVDLESQ-RQVTTEE-GRNLAREFNC--PFFETSAALRH------ 150 (172)
T ss_pred ECCchhHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhhhhc-CccCHHH-HHHHHHHhCC--EEEEEecCCCC------
Confidence 9999999999986 77777653 257999999999998765 4444333 3556666654 89999999999
Q ss_pred CCCChhhHHHHHHHHHHHhc
Q 010254 173 SPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 173 ~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++.+.+...+-
T Consensus 151 ------~v~~~f~~l~~~~~ 164 (172)
T cd04141 151 ------YIDDAFHGLVREIR 164 (172)
T ss_pred ------CHHHHHHHHHHHHH
Confidence 88888888776543
No 39
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.92 E-value=2e-24 Score=190.69 Aligned_cols=159 Identities=24% Similarity=0.337 Sum_probs=123.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t-t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
.+||+|+|++|||||||+++++++.+...+.++.... .....+....+.+.||||||++++...+..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 3799999999999999999999988765544433211 122333444678899999999999888889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecC
Q 010254 95 ACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFN 172 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~ 172 (514)
|++++.+++.+.. |...+.+. .+++|+++|+||+|+... +....+ ....+.+.++. ++++|||++|.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~------ 149 (163)
T cd04136 81 SITSQSSFNDLQD-LREQILRVKDTENVPMVLVGNKCDLEDE-RVVSRE-EGQALARQWGC--PFYETSAKSKI------ 149 (163)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc-ceecHH-HHHHHHHHcCC--eEEEecCCCCC------
Confidence 9999999998876 77777654 247999999999999764 333322 23445556552 89999999999
Q ss_pred CCCChhhHHHHHHHHHHHh
Q 010254 173 SPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 173 ~~l~~~~i~~L~~~i~~~~ 191 (514)
|+.++++.+.+.+
T Consensus 150 ------~v~~l~~~l~~~~ 162 (163)
T cd04136 150 ------NVDEVFADLVRQI 162 (163)
T ss_pred ------CHHHHHHHHHHhc
Confidence 9999998887643
No 40
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.92 E-value=3e-24 Score=189.68 Aligned_cols=159 Identities=23% Similarity=0.327 Sum_probs=123.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
.+||+++|++|||||||+++++.+.+...+.++..... ....+....+.+.+|||||++.+......+++.+|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 37999999999999999999998876554443332211 23334445678889999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecC
Q 010254 95 ACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFN 172 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~ 172 (514)
|++++.+++.+.. |...+... ..+.|+++|+||+|+... +....+ ....+++.++. ++++|||++|.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~------ 149 (164)
T cd04175 81 SITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDE-RVVGKE-QGQNLARQWGC--AFLETSAKAKI------ 149 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcchhc-cEEcHH-HHHHHHHHhCC--EEEEeeCCCCC------
Confidence 9999999998876 77766543 257999999999999764 333322 23456666653 89999999999
Q ss_pred CCCChhhHHHHHHHHHHHh
Q 010254 173 SPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 173 ~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++..++.+.+
T Consensus 150 ------~v~~~~~~l~~~l 162 (164)
T cd04175 150 ------NVNEIFYDLVRQI 162 (164)
T ss_pred ------CHHHHHHHHHHHh
Confidence 9999999887654
No 41
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.92 E-value=2.9e-24 Score=190.21 Aligned_cols=159 Identities=22% Similarity=0.326 Sum_probs=124.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
.+||+++|++|||||||+++|.++++...++++..... ....+....+.+.+|||||.+.+......+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 37999999999999999999999987655444322211 2234445567899999999999888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecC
Q 010254 94 YACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFN 172 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~ 172 (514)
||++++.+++.+.. |+..++... ++.|+++|+||+|+... +....+ ....+++..+. ++++|||++|.
T Consensus 82 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iiiv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~e~Sa~~~~------ 150 (166)
T cd04122 82 YDITRRSTYNHLSS-WLTDARNLTNPNTVIFLIGNKADLEAQ-RDVTYE-EAKQFADENGL--LFLECSAKTGE------ 150 (166)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc-cCcCHH-HHHHHHHHcCC--EEEEEECCCCC------
Confidence 99999999999886 888776653 57899999999999765 333333 34556665543 89999999999
Q ss_pred CCCChhhHHHHHHHHHHHh
Q 010254 173 SPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 173 ~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++...+...+
T Consensus 151 ------~i~e~f~~l~~~~ 163 (166)
T cd04122 151 ------NVEDAFLETAKKI 163 (166)
T ss_pred ------CHHHHHHHHHHHH
Confidence 8888877766543
No 42
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.92 E-value=2.5e-24 Score=190.34 Aligned_cols=159 Identities=23% Similarity=0.293 Sum_probs=125.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
+||+++|++|||||||+++|.++++...+.++.+... .........+.+.+|||||.+.+......+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999998666555433211 11222344688999999999988888889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCC
Q 010254 95 ACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNS 173 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~ 173 (514)
|++++.+++.+.. |+..+.+.. .+.|+++|+||+|+.+. +....+ ....+++.++. +++++||++|.
T Consensus 82 d~~~~~s~~~~~~-~~~~i~~~~~~~~piivv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~------- 149 (165)
T cd01865 82 DITNEESFNAVQD-WSTQIKTYSWDNAQVILVGNKCDMEDE-RVVSSE-RGRQLADQLGF--EFFEASAKENI------- 149 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCCEEEEEECcccCcc-cccCHH-HHHHHHHHcCC--EEEEEECCCCC-------
Confidence 9999999998876 998887764 47899999999999765 333322 33445555543 79999999999
Q ss_pred CCChhhHHHHHHHHHHHhc
Q 010254 174 PLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 174 ~l~~~~i~~L~~~i~~~~~ 192 (514)
|+++|.+.+.+.+.
T Consensus 150 -----gv~~l~~~l~~~~~ 163 (165)
T cd01865 150 -----NVKQVFERLVDIIC 163 (165)
T ss_pred -----CHHHHHHHHHHHHH
Confidence 99999998887654
No 43
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.92 E-value=3.4e-24 Score=189.87 Aligned_cols=159 Identities=18% Similarity=0.305 Sum_probs=126.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
.+||+++|++|||||||++++.+.++...+.++.+... ....+....+.+.+|||||.+.+......+++++|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 48999999999999999999999988666555443322 2223344567899999999998888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecC
Q 010254 94 YACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFN 172 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~ 172 (514)
||++++.+++.+.. |+..+.+.. .+.|+++|+||+|+.+. +....+ ....+++.++. ++++|||++|.
T Consensus 83 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~iiv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~------ 151 (167)
T cd01867 83 YDITDEKSFENIRN-WMRNIEEHASEDVERMLVGNKCDMEEK-RVVSKE-EGEALADEYGI--KFLETSAKANI------ 151 (167)
T ss_pred EECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEECcccccc-cCCCHH-HHHHHHHHcCC--EEEEEeCCCCC------
Confidence 99999999999886 998887753 46899999999999864 333333 23455555544 89999999999
Q ss_pred CCCChhhHHHHHHHHHHHh
Q 010254 173 SPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 173 ~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++.+.+.+.+
T Consensus 152 ------~v~~~~~~i~~~~ 164 (167)
T cd01867 152 ------NVEEAFFTLAKDI 164 (167)
T ss_pred ------CHHHHHHHHHHHH
Confidence 8888888887654
No 44
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.92 E-value=3.9e-24 Score=189.10 Aligned_cols=157 Identities=22% Similarity=0.307 Sum_probs=121.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
.+||+++|++|||||||+++++++.+...+.++.+.+. .........+.+.+|||||++++......+++.+|++++||
T Consensus 1 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 1 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 37999999999999999999999988666555444333 22233455688999999999998888888899999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC----CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 95 ACDRPETLDELSTFWLPELRRLE----VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
|++++.+++.+.. |...++... ++.|+++|+||+|+... +....++ ...++..+.. ++++|||++|.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~-~~v~~~~-~~~~~~~~~~--~~~e~SA~~g~---- 151 (165)
T cd04140 81 SVTSKQSLEELKP-IYELICEIKGNNIEKIPIMLVGNKCDESHK-REVSSNE-GAACATEWNC--AFMETSAKTNH---- 151 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCCEEEEEECcccccc-CeecHHH-HHHHHHHhCC--cEEEeecCCCC----
Confidence 9999999998876 777666532 57999999999999763 2333222 2344455443 79999999999
Q ss_pred cCCCCChhhHHHHHHHHHH
Q 010254 171 FNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~ 189 (514)
|++++.+.|..
T Consensus 152 --------~v~~~f~~l~~ 162 (165)
T cd04140 152 --------NVQELFQELLN 162 (165)
T ss_pred --------CHHHHHHHHHh
Confidence 99999888764
No 45
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.92 E-value=3.5e-24 Score=196.12 Aligned_cols=161 Identities=25% Similarity=0.402 Sum_probs=126.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLP-PTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~-~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
++||+|+|++|||||||+++|+++.|...+.++.. ..+....++...+.+.||||+|.+.+......+++.+|++|+||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 37999999999999999999999988766554433 22234455566788999999999999888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccccc-----------chhHhhhhHHHHHHHhccCcEEEcCcc
Q 010254 95 ACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ-----------QVSLEQVMMPIMQQFREIETCIECSAL 163 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 163 (514)
|++++.+++.+...|...++...++.|+|||+||+|+..+.. .++ .+....++++++.. +++||||+
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs-~e~g~~~ak~~~~~-~y~E~SAk 158 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVT-HEQGTVLAKQVGAV-SYVECSSR 158 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccC-HHHHHHHHHHcCCC-EEEEcCCC
Confidence 999999999997779988887778899999999999965310 122 22445677776533 79999999
Q ss_pred ccccceecCCCCChhhHHHHHHHHHH
Q 010254 164 KQIQVKCFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 164 ~~~~~~~f~~~l~~~~i~~L~~~i~~ 189 (514)
++.+ |+.++......
T Consensus 159 ~~~~-----------~V~~~F~~~~~ 173 (222)
T cd04173 159 SSER-----------SVRDVFHVATV 173 (222)
T ss_pred cCCc-----------CHHHHHHHHHH
Confidence 9872 36666655444
No 46
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=3.3e-24 Score=197.65 Aligned_cols=161 Identities=17% Similarity=0.258 Sum_probs=127.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc--cceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP--EDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~--~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
+..+||+++|++|||||||+++++.+++...+.++.+..... .......+.+.+|||+|.+.+...+..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 678999999999999999999999988766555544433222 223345689999999999999888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceec
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCF 171 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f 171 (514)
+|||++++.+++.+.. |+..+.+..++.|++||+||+|+... .+..+ .. .+.+..+. ++++|||++|.
T Consensus 91 lvfD~~~~~s~~~i~~-w~~~i~~~~~~~piilvgNK~Dl~~~--~v~~~-~~-~~~~~~~~--~~~e~SAk~~~----- 158 (219)
T PLN03071 91 IMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR--QVKAK-QV-TFHRKKNL--QYYEISAKSNY----- 158 (219)
T ss_pred EEEeCCCHHHHHHHHH-HHHHHHHhCCCCcEEEEEEchhhhhc--cCCHH-HH-HHHHhcCC--EEEEcCCCCCC-----
Confidence 9999999999999875 99999877778999999999999643 22222 22 34444332 79999999999
Q ss_pred CCCCChhhHHHHHHHHHHHhcC
Q 010254 172 NSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 172 ~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
|++++.++|.+.+..
T Consensus 159 -------~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 159 -------NFEKPFLYLARKLAG 173 (219)
T ss_pred -------CHHHHHHHHHHHHHc
Confidence 888888888876643
No 47
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.92 E-value=6.4e-24 Score=187.12 Aligned_cols=158 Identities=20% Similarity=0.341 Sum_probs=120.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t-t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
.+||+++|++|||||||+|+|+++++...+.++.... .....+....+.+.+|||||.+++...+..+++.+|++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 3799999999999999999999988765544433221 122233444577889999999999888899999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecC
Q 010254 95 ACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFN 172 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~ 172 (514)
|++++.+++++.. |...+.+.. .++|+++|+||+|+... ... ......+.+.++. +++++||++|.
T Consensus 81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~~--~~~-~~~~~~~~~~~~~--~~~~~Sa~~~~------ 148 (162)
T cd04138 81 AINSRKSFEDIHT-YREQIKRVKDSDDVPMVLVGNKCDLAAR--TVS-SRQGQDLAKSYGI--PYIETSAKTRQ------ 148 (162)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc--eec-HHHHHHHHHHhCC--eEEEecCCCCC------
Confidence 9999999988876 666665542 47899999999999753 122 2233445555543 79999999999
Q ss_pred CCCChhhHHHHHHHHHHHh
Q 010254 173 SPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 173 ~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++.+.+.+.+
T Consensus 149 ------gi~~l~~~l~~~~ 161 (162)
T cd04138 149 ------GVEEAFYTLVREI 161 (162)
T ss_pred ------CHHHHHHHHHHHh
Confidence 9999988887543
No 48
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.92 E-value=6.1e-24 Score=187.56 Aligned_cols=159 Identities=21% Similarity=0.308 Sum_probs=122.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
++||+|+|++|||||||+++++++.+...+.++..... ....+....+.+.||||||.+++...+..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999999987665544332111 22333444667899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecC
Q 010254 95 ACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFN 172 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~ 172 (514)
|++++.+++++.. |...+.+.. .++|+++|+||+|+... +..... ....+...++. ++++|||++|.
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piviv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~------ 149 (163)
T cd04176 81 SLVNQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDLESE-REVSSA-EGRALAEEWGC--PFMETSAKSKT------ 149 (163)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhc-CccCHH-HHHHHHHHhCC--EEEEecCCCCC------
Confidence 9999999999876 777776542 47999999999998654 222222 23445555543 78999999999
Q ss_pred CCCChhhHHHHHHHHHHHh
Q 010254 173 SPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 173 ~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++...+.+.+
T Consensus 150 ------~v~~l~~~l~~~l 162 (163)
T cd04176 150 ------MVNELFAEIVRQM 162 (163)
T ss_pred ------CHHHHHHHHHHhc
Confidence 9999988887643
No 49
>PTZ00369 Ras-like protein; Provisional
Probab=99.92 E-value=5.8e-24 Score=192.19 Aligned_cols=163 Identities=22% Similarity=0.340 Sum_probs=126.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
+..+||+|+|++|||||||++++.++.+...+.++.+... ....+....+.+.+|||||.+++...+..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 4579999999999999999999999887655544332221 223345557789999999999999988999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 93 TYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
|||++++.+++.+.. |...+.+.. ++.|+++|+||+|+... +.+..+ ....+.+.++. ++++|||++|.
T Consensus 83 v~D~s~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~-~~i~~~-~~~~~~~~~~~--~~~e~Sak~~~---- 153 (189)
T PTZ00369 83 VYSITSRSSFEEIAS-FREQILRVKDKDRVPMILVGNKCDLDSE-RQVSTG-EGQELAKSFGI--PFLETSAKQRV---- 153 (189)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc-cccCHH-HHHHHHHHhCC--EEEEeeCCCCC----
Confidence 999999999999886 887776542 47899999999998654 333322 23445555543 79999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhcC
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
|++++++.+.+.+..
T Consensus 154 --------gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 154 --------NVDEAFYELVREIRK 168 (189)
T ss_pred --------CHHHHHHHHHHHHHH
Confidence 888888888776543
No 50
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.92 E-value=4.7e-24 Score=187.67 Aligned_cols=156 Identities=22% Similarity=0.286 Sum_probs=121.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
+||+++|++|||||||+++|++..+.....+....+. ....+....+.+.+|||+|.+.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999887554433222211 12234455778999999999999888899999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCCC
Q 010254 95 ACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNSP 174 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~ 174 (514)
|++++.+++++.. |+..+++..+++|+++|+||+|+... . .+....+.+.++. +++++||++|.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~p~ivv~nK~Dl~~~---~--~~~~~~~~~~~~~--~~~~~Sa~~~~-------- 144 (161)
T cd04124 81 DVTRKITYKNLSK-WYEELREYRPEIPCIVVANKIDLDPS---V--TQKKFNFAEKHNL--PLYYVSAADGT-------- 144 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCcEEEEEECccCchh---H--HHHHHHHHHHcCC--eEEEEeCCCCC--------
Confidence 9999999988875 99998876678999999999998532 1 1122334444432 79999999999
Q ss_pred CChhhHHHHHHHHHHHhc
Q 010254 175 LQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 175 l~~~~i~~L~~~i~~~~~ 192 (514)
|++++.+.+.+.+.
T Consensus 145 ----gv~~l~~~l~~~~~ 158 (161)
T cd04124 145 ----NVVKLFQDAIKLAV 158 (161)
T ss_pred ----CHHHHHHHHHHHHH
Confidence 99999888876553
No 51
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.92 E-value=3.6e-24 Score=193.43 Aligned_cols=162 Identities=20% Similarity=0.303 Sum_probs=124.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEe
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t-t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 95 (514)
.||+|+|++|||||||+++|.++.+...+.++.... .....+....+.+.||||+|.+.+......+++.+|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 389999999999999999999998866544333221 1222334456889999999999888777788999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccccc-----------chhHhhhhHHHHHHHhccCcEEEcCccc
Q 010254 96 CDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ-----------QVSLEQVMMPIMQQFREIETCIECSALK 164 (514)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 164 (514)
++++.+++.+...|+..+....++.|+++|+||+|+..... .+.. +....+++.++.. ++++|||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~-~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISY-EEGLAVAKRINAL-RYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCH-HHHHHHHHHcCCC-EEEEccCCc
Confidence 99999999987669999887767899999999999976411 1111 1223444454422 789999999
Q ss_pred cccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 165 QIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 165 ~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|. |++++.+.+.+.+-
T Consensus 159 ~~------------~v~e~f~~l~~~~~ 174 (189)
T cd04134 159 NR------------GVNEAFTEAARVAL 174 (189)
T ss_pred CC------------CHHHHHHHHHHHHh
Confidence 99 89998888877653
No 52
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.92 E-value=5.9e-24 Score=190.90 Aligned_cols=160 Identities=17% Similarity=0.264 Sum_probs=125.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc--ccee----------CCeeEEEEEeCCCCccchhhHHH
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP--EDFY----------PDRVPITIIDTPSSVEDRGKLGE 82 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~--~~~~----------~~~~~~~l~Dt~G~~~~~~~~~~ 82 (514)
..+||+++|++|||||||++++.+..+...+.++.+..... ..+. ...+.+.||||||++.+......
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 35899999999999999999999988765544433221111 1111 24588999999999998888899
Q ss_pred hhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEc
Q 010254 83 ELRRADAVVLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIEC 160 (514)
Q Consensus 83 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (514)
+++++|++++|||++++.++.++.. |+..+.... ++.|+++|+||+|+.+. +....+ ....+++.++. +++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRN-WMSQLQTHAYCENPDIVLCGNKADLEDQ-RQVSEE-QAKALADKYGI--PYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEeCccchhc-CccCHH-HHHHHHHHcCC--eEEEE
Confidence 9999999999999999999999986 998887642 57899999999999764 333333 34667777654 89999
Q ss_pred CccccccceecCCCCChhhHHHHHHHHHHHh
Q 010254 161 SALKQIQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 161 Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
||++|. |++++.+.+.+.+
T Consensus 158 Sak~~~------------~v~~l~~~l~~~~ 176 (180)
T cd04127 158 SAATGT------------NVEKAVERLLDLV 176 (180)
T ss_pred eCCCCC------------CHHHHHHHHHHHH
Confidence 999999 8888888887644
No 53
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.92 E-value=7.9e-24 Score=187.40 Aligned_cols=159 Identities=20% Similarity=0.322 Sum_probs=124.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
.+||+|+|++|||||||+++|+++++...+.++.+... ....+....+.+.+|||||.+.+......+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 37999999999999999999999887554433322211 1223334467899999999998888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecC
Q 010254 94 YACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFN 172 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~ 172 (514)
||++++.++..+.. |+..+.+.. ++.|+++|+||+|+... +....+ ....+++.++. +++++||++|.
T Consensus 82 ~d~~~~~s~~~l~~-~~~~~~~~~~~~~~~iiv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~------ 150 (166)
T cd01869 82 YDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTDK-RVVDYS-EAQEFADELGI--PFLETSAKNAT------ 150 (166)
T ss_pred EECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEEChhcccc-cCCCHH-HHHHHHHHcCC--eEEEEECCCCc------
Confidence 99999999999986 998887764 57899999999998765 333333 33455555543 89999999999
Q ss_pred CCCChhhHHHHHHHHHHHh
Q 010254 173 SPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 173 ~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++.+.+.+.+
T Consensus 151 ------~v~~~~~~i~~~~ 163 (166)
T cd01869 151 ------NVEQAFMTMAREI 163 (166)
T ss_pred ------CHHHHHHHHHHHH
Confidence 8999988887654
No 54
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.92 E-value=6.1e-24 Score=185.70 Aligned_cols=154 Identities=13% Similarity=0.191 Sum_probs=116.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeC
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYAC 96 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~ 96 (514)
+||+++|++|||||||+.+++.+.|...+.+..+.......+....+.+.+|||+|.+. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 58999999999999999999998876554443222222334445567899999999864 3467889999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCccc-ccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCC
Q 010254 97 DRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDE-NQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNS 173 (514)
Q Consensus 97 ~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~ 173 (514)
+++.+|+.+.. |++.+.... ++.|+++|+||+|+... .+.++.+ ....++++.+.. .+++|||++|.
T Consensus 76 ~~~~sf~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~-~~~~~~~~~~~~-~~~e~SAk~~~------- 145 (158)
T cd04103 76 ENEASFQTVYN-LYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDA-RARQLCADMKRC-SYYETCATYGL------- 145 (158)
T ss_pred CCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHH-HHHHHHHHhCCC-cEEEEecCCCC-------
Confidence 99999999876 888887664 56899999999998642 2344433 335566655423 79999999999
Q ss_pred CCChhhHHHHHHHHHHH
Q 010254 174 PLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 174 ~l~~~~i~~L~~~i~~~ 190 (514)
|++++.+.+.+.
T Consensus 146 -----~i~~~f~~~~~~ 157 (158)
T cd04103 146 -----NVERVFQEAAQK 157 (158)
T ss_pred -----CHHHHHHHHHhh
Confidence 888888777643
No 55
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.91 E-value=5.4e-24 Score=187.70 Aligned_cols=157 Identities=17% Similarity=0.280 Sum_probs=123.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--ccccee--CCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFY--PDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
+||+++|++|||||||+++|+++.+...+.++.+... ....+. ...+.+.+|||||++++......+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999887554433222111 112222 446889999999999888888889999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecC
Q 010254 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFN 172 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~ 172 (514)
|||++++.+++.+.. |+..+.+...+.|+++|+||+|+... +.+.. +....+++.++. +++++||++|.
T Consensus 81 v~d~~~~~s~~~l~~-~~~~~~~~~~~~p~iiv~nK~Dl~~~-~~v~~-~~~~~~~~~~~~--~~~~~Sa~~~~------ 149 (162)
T cd04106 81 VFSTTDRESFEAIES-WKEKVEAECGDIPMVLVQTKIDLLDQ-AVITN-EEAEALAKRLQL--PLFRTSVKDDF------ 149 (162)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEEChhcccc-cCCCH-HHHHHHHHHcCC--eEEEEECCCCC------
Confidence 999999999998875 98888776678999999999999764 23332 234556666654 89999999999
Q ss_pred CCCChhhHHHHHHHHHHH
Q 010254 173 SPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 173 ~~l~~~~i~~L~~~i~~~ 190 (514)
|++++.+.|...
T Consensus 150 ------~v~~l~~~l~~~ 161 (162)
T cd04106 150 ------NVTELFEYLAEK 161 (162)
T ss_pred ------CHHHHHHHHHHh
Confidence 999998888653
No 56
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.91 E-value=6.8e-24 Score=191.88 Aligned_cols=157 Identities=20% Similarity=0.341 Sum_probs=121.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeC
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYAC 96 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~ 96 (514)
||+|+|++|||||||+++|+++.+...+.++.+... ....+....+.+.||||||.+++......+++.+|++|+|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 689999999999999999999887655444332211 2223344457799999999999988888999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcC----CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecC
Q 010254 97 DRPETLDELSTFWLPELRRLE----VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFN 172 (514)
Q Consensus 97 ~~~~s~~~~~~~~~~~l~~~~----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~ 172 (514)
+++.+++.+.. |+..+.... .+.|+++|+||+|+... +.....+ ...+++.++. +++++||++|.
T Consensus 81 ~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilvgNK~Dl~~~-~~v~~~~-~~~~~~~~~~--~~~e~SAk~~~------ 149 (190)
T cd04144 81 TSRSTFERVER-FREQIQRVKDESAADVPIMIVGNKCDKVYE-REVSTEE-GAALARRLGC--EFIEASAKTNV------ 149 (190)
T ss_pred CCHHHHHHHHH-HHHHHHHHhcccCCCCCEEEEEEChhcccc-CccCHHH-HHHHHHHhCC--EEEEecCCCCC------
Confidence 99999999876 877776542 46899999999999754 3333332 3456666653 79999999999
Q ss_pred CCCChhhHHHHHHHHHHHh
Q 010254 173 SPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 173 ~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++.+.+.+.+
T Consensus 150 ------~v~~l~~~l~~~l 162 (190)
T cd04144 150 ------NVERAFYTLVRAL 162 (190)
T ss_pred ------CHHHHHHHHHHHH
Confidence 8888888887654
No 57
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.91 E-value=9.1e-24 Score=189.11 Aligned_cols=161 Identities=21% Similarity=0.298 Sum_probs=123.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
+||+++|++|||||||+++|+++.|...+.++.+... ....+....+.+.+|||+|.+.+...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999988666555443222 22334445688999999999998888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCC-CCcEEEEEecccCcccc---cchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 95 ACDRPETLDELSTFWLPELRRLEV-KVPVIVVGCKLDLRDEN---QQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
|++++.+++++.. |+..+++..+ ..| |+|+||+|+.... ......+....+++.++. ++++|||++|.
T Consensus 81 D~t~~~s~~~i~~-~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~--~~~e~SAk~g~---- 152 (182)
T cd04128 81 DLTRKSTLNSIKE-WYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKA--PLIFCSTSHSI---- 152 (182)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCC--EEEEEeCCCCC----
Confidence 9999999999875 9998877543 355 7899999996321 111112334556666553 79999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhcC
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
|++++.+.+.+.+..
T Consensus 153 --------~v~~lf~~l~~~l~~ 167 (182)
T cd04128 153 --------NVQKIFKIVLAKAFD 167 (182)
T ss_pred --------CHHHHHHHHHHHHHh
Confidence 999999988876643
No 58
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.91 E-value=6.5e-24 Score=187.60 Aligned_cols=158 Identities=17% Similarity=0.269 Sum_probs=121.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
+||+++|++|||||||+++++.+.+...+.++.+... .......+.+.+.+|||+|++.+......++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999998876554444332222 11222345688999999999988877788899999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCCC
Q 010254 95 ACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNSP 174 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~ 174 (514)
|++++.+++.+.. |+..+.+...++|+++|+||+|+... ... .+ ...+.+... .++++|||++|.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~piiiv~nK~Dl~~~--~~~-~~-~~~~~~~~~--~~~~e~Sa~~~~-------- 145 (166)
T cd00877 81 DVTSRVTYKNVPN-WHRDLVRVCGNIPIVLCGNKVDIKDR--KVK-AK-QITFHRKKN--LQYYEISAKSNY-------- 145 (166)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCcEEEEEEchhcccc--cCC-HH-HHHHHHHcC--CEEEEEeCCCCC--------
Confidence 9999999999875 99998887668999999999999743 121 11 123333322 279999999999
Q ss_pred CChhhHHHHHHHHHHHhcC
Q 010254 175 LQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 175 l~~~~i~~L~~~i~~~~~~ 193 (514)
|++++.+.+.+.+..
T Consensus 146 ----~v~~~f~~l~~~~~~ 160 (166)
T cd00877 146 ----NFEKPFLWLARKLLG 160 (166)
T ss_pred ----ChHHHHHHHHHHHHh
Confidence 999999999877643
No 59
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.91 E-value=7.4e-24 Score=187.88 Aligned_cols=160 Identities=19% Similarity=0.232 Sum_probs=123.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEe
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 95 (514)
||+++|++|||||||+++++++.|...+.++.+... ....+......+.+|||||.+++......+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 799999999999999999999988666654433222 222334446789999999999998888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhc-CC-CCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCC
Q 010254 96 CDRPETLDELSTFWLPELRRL-EV-KVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNS 173 (514)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~-~~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~ 173 (514)
++++.+++.+.. |++.+.+. .+ +.|+++|+||+|+.+.......++....++++++. +++++||++|.
T Consensus 82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~e~Sa~~g~------- 151 (170)
T cd04108 82 LTDVASLEHTRQ-WLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQA--EYWSVSALSGE------- 151 (170)
T ss_pred CcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCC--eEEEEECCCCC-------
Confidence 999999999875 98877543 22 46799999999986542211223334455566553 78999999999
Q ss_pred CCChhhHHHHHHHHHHHhc
Q 010254 174 PLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 174 ~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.+.+.+.
T Consensus 152 -----~v~~lf~~l~~~~~ 165 (170)
T cd04108 152 -----NVREFFFRVAALTF 165 (170)
T ss_pred -----CHHHHHHHHHHHHH
Confidence 99999988877654
No 60
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.91 E-value=1.1e-23 Score=192.71 Aligned_cols=159 Identities=25% Similarity=0.269 Sum_probs=119.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeC
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYAC 96 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~ 96 (514)
+||+|+|.+|||||||+++|++++|... .++.+... .......+.+.||||+|.+.+......+++.+|++|+|||+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~-~~Tig~~~--~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dv 77 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDT-VSTVGGAF--YLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDV 77 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCC-CCccceEE--EEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEEC
Confidence 5899999999999999999999987532 22221111 11123567899999999999988888899999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc------------------ccchhHhhhhHHHHHHHhcc----
Q 010254 97 DRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE------------------NQQVSLEQVMMPIMQQFREI---- 154 (514)
Q Consensus 97 ~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------------~~~~~~~~~~~~~~~~~~~~---- 154 (514)
+++.+++++...|....+...++.|+|||+||+|+... .+.++.+ ....++++++..
T Consensus 78 t~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~-e~~~~a~~~~~~~~~~ 156 (220)
T cd04126 78 SNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLE-DAKAFYKRINKYKMLD 156 (220)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHH-HHHHHHHHhCcccccc
Confidence 99999999987455544433457899999999999751 2444444 345677665421
Q ss_pred --------CcEEEcCccccccceecCCCCChhhHHHHHHHHHHHh
Q 010254 155 --------ETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 155 --------~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
.+++||||++|. |++++...+.+.+
T Consensus 157 ~~~~~~~~~~~~E~SA~tg~------------~V~elf~~i~~~~ 189 (220)
T cd04126 157 EDLSPAAEKMCFETSAKTGY------------NVDELFEYLFNLV 189 (220)
T ss_pred ccccccccceEEEeeCCCCC------------CHHHHHHHHHHHH
Confidence 279999999999 7777777776544
No 61
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.8e-24 Score=172.52 Aligned_cols=141 Identities=19% Similarity=0.248 Sum_probs=127.9
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|..|||||+|+++|..+-|++....++|++|.++++.+++.+.+..||||+|+|+|+++. +.+|+.+|+
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsit--qsyyrsaha 82 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSIT--QSYYRSAHA 82 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHH--HHHhhhcce
Confidence 346899999999999999999999999999988999999999999999777888899999999999998 789999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCcc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVL 512 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~ 512 (514)
+|+|||++-..||+-+-+|+.++..+... ++--|+||||+|+.+.+ ++.+.+++|++...+-|
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~---kvlkilvgnk~d~~drrevp~qigeefs~~qdmyf 146 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANN---KVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYF 146 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhc---ceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhh
Confidence 99999999999999999999999988743 57789999999998875 77888999998766544
No 62
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.1e-24 Score=171.92 Aligned_cols=148 Identities=22% Similarity=0.350 Sum_probs=125.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccce-eCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDF-YPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
.+|+.|+|+..||||||+-+.++..|..+.+++.+.-- ....| ..+.+++.+|||+|++.++.....++++|+++|++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 46999999999999999999999999888766444321 11111 23468999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccc
Q 010254 94 YACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~ 168 (514)
||+++.++|..++. |...++.++ .+.|||+|+||||+.++ |.++.+. ...++++++. .+||+|||.+.||
T Consensus 101 yDitNeeSf~svqd-w~tqIktysw~naqvilvgnKCDmd~e-Rvis~e~-g~~l~~~LGf--efFEtSaK~NinV 171 (193)
T KOG0093|consen 101 YDITNEESFNSVQD-WITQIKTYSWDNAQVILVGNKCDMDSE-RVISHER-GRQLADQLGF--EFFETSAKENINV 171 (193)
T ss_pred EecCCHHHHHHHHH-HHHHheeeeccCceEEEEecccCCccc-eeeeHHH-HHHHHHHhCh--HHhhhcccccccH
Confidence 99999999999997 999998875 68999999999999887 7777664 4778889886 8999999999955
No 63
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=1e-23 Score=192.61 Aligned_cols=160 Identities=19% Similarity=0.258 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--ccccee-CCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFY-PDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
+||+|+|++|||||||+++|+++.+...+.++.+... ....+. ...+.+.+|||||.+.+...+..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999887555443332111 122333 4578899999999999988889999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc-----CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccc
Q 010254 94 YACDRPETLDELSTFWLPELRRL-----EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~-----~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~ 168 (514)
||++++.+++.+.. |...+... ..++|++||+||+|+.+. +....+ ....+++.++. .++++|||++|.
T Consensus 81 ~D~t~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~-~~~~~~~~~~~-~~~~e~Sak~~~-- 154 (201)
T cd04107 81 FDVTRPSTFEAVLK-WKADLDSKVTLPNGEPIPCLLLANKCDLKKR-LAKDGE-QMDQFCKENGF-IGWFETSAKEGI-- 154 (201)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhcccCCCCCcEEEEEECCCcccc-cccCHH-HHHHHHHHcCC-ceEEEEeCCCCC--
Confidence 99999999999975 88877642 247899999999999753 223333 34666666552 279999999999
Q ss_pred eecCCCCChhhHHHHHHHHHHHhc
Q 010254 169 KCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 169 ~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++.+.+.+.+.
T Consensus 155 ----------~v~e~f~~l~~~l~ 168 (201)
T cd04107 155 ----------NIEEAMRFLVKNIL 168 (201)
T ss_pred ----------CHHHHHHHHHHHHH
Confidence 88888888877654
No 64
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.91 E-value=1.7e-23 Score=189.56 Aligned_cols=160 Identities=21% Similarity=0.282 Sum_probs=115.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-cc-cccceeCCeeEEEEEeCCCCccchh--------hHHHhhhc
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TR-LPEDFYPDRVPITIIDTPSSVEDRG--------KLGEELRR 86 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~-tt-~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~ 86 (514)
+||+|+|++|||||||+++|+++++...+.++... .. ....+....+.+.||||||.+.+.. ....+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999886654333221 11 1223344457899999999764321 12345789
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHHhc----CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCc
Q 010254 87 ADAVVLTYACDRPETLDELSTFWLPELRRL----EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSA 162 (514)
Q Consensus 87 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 162 (514)
+|++++|||++++.+++.+.. |...+... .+++|+++|+||+|+... +.+..+ ....++.+.... ++++|||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~-~~~~i~~~~~~~~~~~piiivgNK~Dl~~~-~~~~~~-~~~~~~~~~~~~-~~~e~Sa 156 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKL-LRQQILETRPAGNKEPPIVVVGNKRDQQRH-RFAPRH-VLSVLVRKSWKC-GYLECSA 156 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcccCCCCCCEEEEEECcccccc-ccccHH-HHHHHHHHhcCC-cEEEecC
Confidence 999999999999999998875 77766553 257999999999999764 333333 334444332222 7999999
Q ss_pred cccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 163 LKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 163 ~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
++|. |+++|.+.+...+-
T Consensus 157 k~g~------------~v~~lf~~i~~~~~ 174 (198)
T cd04142 157 KYNW------------HILLLFKELLISAT 174 (198)
T ss_pred CCCC------------CHHHHHHHHHHHhh
Confidence 9999 99999888877654
No 65
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.91 E-value=1.2e-23 Score=184.97 Aligned_cols=156 Identities=20% Similarity=0.277 Sum_probs=122.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
+||+++|++|||||||+++++++.+...+.++.+... ....+....+.+.+|||+|.+.+......+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999987655443322211 12233344578899999999988888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCC
Q 010254 95 ACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNS 173 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~ 173 (514)
|++++.+++.+.. |+..+.... .+.|+++|+||+|+... +.+..+ ....+++.++. ++++|||++|.
T Consensus 81 d~~~~~sf~~~~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~e~Sa~~~~------- 148 (161)
T cd04117 81 DISSERSYQHIMK-WVSDVDEYAPEGVQKILIGNKADEEQK-RQVGDE-QGNKLAKEYGM--DFFETSACTNS------- 148 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc-cCCCHH-HHHHHHHHcCC--EEEEEeCCCCC-------
Confidence 9999999999976 988887654 36899999999999765 333333 34556666653 89999999999
Q ss_pred CCChhhHHHHHHHHHH
Q 010254 174 PLQPSEIVGVKRVVQE 189 (514)
Q Consensus 174 ~l~~~~i~~L~~~i~~ 189 (514)
|++++.+.|.+
T Consensus 149 -----~v~~~f~~l~~ 159 (161)
T cd04117 149 -----NIKESFTRLTE 159 (161)
T ss_pred -----CHHHHHHHHHh
Confidence 88888888765
No 66
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.91 E-value=7e-24 Score=189.31 Aligned_cols=159 Identities=22% Similarity=0.420 Sum_probs=123.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCC
Q 010254 19 IVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACD 97 (514)
Q Consensus 19 I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~ 97 (514)
|+|+|++|||||||++++.++.+...+.+...... ....+....+.+.+|||||++.+......+++.+|++|+|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 68999999999999999999987655443222111 22233445678999999999988888888899999999999999
Q ss_pred CcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccccc-----------chhHhhhhHHHHHHHhccCcEEEcCccccc
Q 010254 98 RPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ-----------QVSLEQVMMPIMQQFREIETCIECSALKQI 166 (514)
Q Consensus 98 ~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~ 166 (514)
++.+++.+...|++.+.+..+++|+++|+||+|+..... .++. +....+++.++.. ++++|||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~-~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTY-EQGEALAKRIGAV-KYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccH-HHHHHHHHHcCCc-EEEEecCCCCC
Confidence 999999987679999988777899999999999975311 1222 2334566666533 79999999999
Q ss_pred cceecCCCCChhhHHHHHHHHHHHh
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++.+.+.+.+
T Consensus 159 ------------~v~~lf~~l~~~~ 171 (174)
T smart00174 159 ------------GVREVFEEAIRAA 171 (174)
T ss_pred ------------CHHHHHHHHHHHh
Confidence 8999888877643
No 67
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.91 E-value=1.4e-23 Score=185.39 Aligned_cols=159 Identities=22% Similarity=0.361 Sum_probs=122.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEe
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t-t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 95 (514)
+||+|+|++|||||||+|+|++..+...+.++.... .....+....+.+.+|||||++++...+..+++.+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999988765544333211 1223344456789999999999998888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCC
Q 010254 96 CDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNS 173 (514)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~ 173 (514)
++++.+++.+.. |...+.+.. .+.|+++|+||+|+... +.... +....+.+.++. ++++|||++|.
T Consensus 81 ~~~~~s~~~~~~-~~~~i~~~~~~~~~pii~v~nK~Dl~~~-~~~~~-~~~~~~~~~~~~--~~~~~Sa~~~~------- 148 (164)
T smart00173 81 ITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLESE-RVVST-EEGKELARQWGC--PFLETSAKERV------- 148 (164)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc-ceEcH-HHHHHHHHHcCC--EEEEeecCCCC-------
Confidence 999999998876 666665432 36899999999999764 22222 233455555542 89999999999
Q ss_pred CCChhhHHHHHHHHHHHhc
Q 010254 174 PLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 174 ~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.+.+.+.
T Consensus 149 -----~i~~l~~~l~~~~~ 162 (164)
T smart00173 149 -----NVDEAFYDLVREIR 162 (164)
T ss_pred -----CHHHHHHHHHHHHh
Confidence 99999998887653
No 68
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.91 E-value=1.9e-23 Score=184.61 Aligned_cols=159 Identities=20% Similarity=0.323 Sum_probs=122.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t-t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
.+||+++|++|||||||++++++..+.....++.... +....+....+.+.+|||||++++......+++.+|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999987654444333221 122334455678999999999999888899999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecC
Q 010254 95 ACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFN 172 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~ 172 (514)
|++++.+++.+.. |...+.+. ..+.|+++|+||+|+... +....+ ....+.+.++. +++++||++|.
T Consensus 82 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~------ 150 (164)
T cd04145 82 SVTDRGSFEEVDK-FHTQILRVKDRDEFPMILVGNKADLEHQ-RKVSRE-EGQELARKLKI--PYIETSAKDRL------ 150 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHHhCCCCCCEEEEeeCcccccc-ceecHH-HHHHHHHHcCC--cEEEeeCCCCC------
Confidence 9999999998876 77766653 247899999999999764 323322 23455555543 89999999999
Q ss_pred CCCChhhHHHHHHHHHHHh
Q 010254 173 SPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 173 ~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++++.+.+.+
T Consensus 151 ------~i~~l~~~l~~~~ 163 (164)
T cd04145 151 ------NVDKAFHDLVRVI 163 (164)
T ss_pred ------CHHHHHHHHHHhh
Confidence 9999998887654
No 69
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.91 E-value=1.4e-23 Score=186.13 Aligned_cols=158 Identities=18% Similarity=0.259 Sum_probs=122.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
+||+++|++|||||||+|+|+++++...+.++.+... ....+....+.+.+|||||.+.+......+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999987654443332211 12333455789999999999988888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC------CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccc
Q 010254 95 ACDRPETLDELSTFWLPELRRLE------VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~------~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~ 168 (514)
|++++.+++.+.. |...+.+.. .+.|+++|+||+|+.+. +....+ ....+....+. +++++||++|.
T Consensus 81 D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~-- 153 (168)
T cd04119 81 DVTDRQSFEALDS-WLKEMKQEGGPHGNMENIVVVVCANKIDLTKH-RAVSED-EGRLWAESKGF--KYFETSACTGE-- 153 (168)
T ss_pred ECCCHHHHHhHHH-HHHHHHHhccccccCCCceEEEEEEchhcccc-cccCHH-HHHHHHHHcCC--eEEEEECCCCC--
Confidence 9999999998875 888887653 36899999999999743 222222 23345555542 79999999999
Q ss_pred eecCCCCChhhHHHHHHHHHHHh
Q 010254 169 KCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 169 ~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++.+.+.+.+
T Consensus 154 ----------gi~~l~~~l~~~l 166 (168)
T cd04119 154 ----------GVNEMFQTLFSSI 166 (168)
T ss_pred ----------CHHHHHHHHHHHH
Confidence 9999999887653
No 70
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.91 E-value=1.4e-23 Score=189.68 Aligned_cols=162 Identities=23% Similarity=0.374 Sum_probs=123.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-ccccee-CCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFY-PDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
+||+|+|++|||||||+++|.++.+...+.++..... ...... ...+.+.+|||||++++......+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 5899999999999999999999987655443222111 112222 44678999999999988888888899999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc---cchhHhhhhHHHHHHHhccCcEEEcCccccccceec
Q 010254 95 ACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN---QQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCF 171 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f 171 (514)
|++++.+++.+...|+..+....++.|+++|+||+|+.... +.+. .+....++..++. .++++|||++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~-~~~~~~~~~~~~~-~~~~e~Sa~~~~----- 153 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVT-PAQAESVAKKQGA-FAYLECSAKTME----- 153 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcC-HHHHHHHHHHcCC-cEEEEccCCCCC-----
Confidence 99999999998767988887666689999999999986541 1222 2234555655542 278999999999
Q ss_pred CCCCChhhHHHHHHHHHHHhc
Q 010254 172 NSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 172 ~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++.+.+.+.+.
T Consensus 154 -------~v~~~f~~l~~~~~ 167 (187)
T cd04132 154 -------NVEEVFDTAIEEAL 167 (187)
T ss_pred -------CHHHHHHHHHHHHH
Confidence 88888888776553
No 71
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.91 E-value=1.8e-23 Score=188.68 Aligned_cols=157 Identities=27% Similarity=0.417 Sum_probs=117.6
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHhcCCCC-----CCCCCCCCC---cccc--------cceeCCeeEEEEEeCCCCccchh
Q 010254 16 GVRIVVCGEKGTGKSSLIV-TAAADTFP-----ANVPPVLPP---TRLP--------EDFYPDRVPITIIDTPSSVEDRG 78 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin-~l~~~~~~-----~~~~~~~~~---tt~~--------~~~~~~~~~~~l~Dt~G~~~~~~ 78 (514)
.+||+++|++|||||||+. ++.++.+. ..+.++... .... ..++...+.+.||||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4899999999999999996 66655432 222232211 1011 134455789999999998752
Q ss_pred hHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc------------------ccchhH
Q 010254 79 KLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE------------------NQQVSL 140 (514)
Q Consensus 79 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------------------~~~~~~ 140 (514)
....+++++|++++|||++++.+++.+...|.+.+++..++.|+++|+||+||... .+.++.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 34567899999999999999999999976699998877678999999999998642 134444
Q ss_pred hhhhHHHHHHHhccCcEEEcCccccccceecCCCCChhhHHHHHHHHHH
Q 010254 141 EQVMMPIMQQFREIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 141 ~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~ 189 (514)
+ ..+.++++++. +++||||++|. |++++.+.+.+
T Consensus 160 ~-e~~~~a~~~~~--~~~E~SAkt~~------------~V~e~F~~~~~ 193 (195)
T cd01873 160 E-TGRAVAKELGI--PYYETSVVTQF------------GVKDVFDNAIR 193 (195)
T ss_pred H-HHHHHHHHhCC--EEEEcCCCCCC------------CHHHHHHHHHH
Confidence 4 45678888775 89999999999 88887777654
No 72
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.91 E-value=1.7e-23 Score=187.71 Aligned_cols=140 Identities=14% Similarity=0.168 Sum_probs=122.3
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|.+|||||||+++|..+.+...+.++.+..+....+.+++......+|||+|+++|..++ ..+++++|++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~--~~~~~~ad~i 82 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIF--RSYSRGAQGI 82 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHH--HHHhcCCCEE
Confidence 45899999999999999999999999887777777877877778777445566799999999999887 5788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
|+|||++++.||+.+..|+.++.... ++.|++|||||.|+...+ +..++++++|++++++||
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~----~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~ 145 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA----PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFF 145 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999997654 379999999999997654 678889999999998876
No 73
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.91 E-value=2.8e-24 Score=172.29 Aligned_cols=150 Identities=27% Similarity=0.366 Sum_probs=123.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
++.+|+|+||||||||+.+|....|...+..+.+--- ..+.+....+++.||||+|++.++.+...+++..+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 5788999999999999999999988776554332211 22344467889999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccc-eec
Q 010254 95 ACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV-KCF 171 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~-~~f 171 (514)
|+++.++|.++.. |++.++..++..|-++||||.|+... +.+..+ ....++.+.+- .+||+|||.+.|+ ..|
T Consensus 89 DVTn~ESF~Nv~r-WLeei~~ncdsv~~vLVGNK~d~~~R-rvV~t~-dAr~~A~~mgi--e~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 89 DVTNGESFNNVKR-WLEEIRNNCDSVPKVLVGNKNDDPER-RVVDTE-DARAFALQMGI--ELFETSAKENENVEAMF 161 (198)
T ss_pred ECcchhhhHhHHH-HHHHHHhcCccccceecccCCCCccc-eeeehH-HHHHHHHhcCc--hheehhhhhcccchHHH
Confidence 9999999999997 99999999989999999999999875 444444 44667766553 8999999999966 344
No 74
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.91 E-value=2e-23 Score=184.63 Aligned_cols=159 Identities=23% Similarity=0.315 Sum_probs=122.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT--RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t--t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
.+||+++|++|||||||+++|.++++.....+..+.. +....+......+.+|||||++.+......+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 3799999999999999999999998755443333221 12233344457899999999998888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCC-CCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecC
Q 010254 94 YACDRPETLDELSTFWLPELRRLEV-KVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFN 172 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~ 172 (514)
+|++++.+++.+.. |+..+....+ +.|+++|+||+|+... +....+ ....+....+. ++++|||++|.
T Consensus 83 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~pi~vv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~------ 151 (165)
T cd01868 83 YDITKKQTFENVER-WLKELRDHADSNIVIMLVGNKSDLRHL-RAVPTE-EAKAFAEKNGL--SFIETSALDGT------ 151 (165)
T ss_pred EECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc-ccCCHH-HHHHHHHHcCC--EEEEEECCCCC------
Confidence 99999999999885 8888877653 5899999999999764 333333 23445544432 79999999999
Q ss_pred CCCChhhHHHHHHHHHHHh
Q 010254 173 SPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 173 ~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++.+.+.+.+
T Consensus 152 ------~v~~l~~~l~~~i 164 (165)
T cd01868 152 ------NVEEAFKQLLTEI 164 (165)
T ss_pred ------CHHHHHHHHHHHh
Confidence 9999998887654
No 75
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.91 E-value=2.3e-23 Score=189.68 Aligned_cols=160 Identities=22% Similarity=0.290 Sum_probs=125.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
..+||+|+|++|||||||+++|.++.+...+.++.+... ....+....+.+.||||||.+.+......+++.+|++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 368999999999999999999999887554443332211 112223445789999999999888888899999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecC
Q 010254 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFN 172 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~ 172 (514)
|||++++.+++.+.. |+..+....+..|++||+||+|+... +.... +....+.+.++. +++++||++|.
T Consensus 85 v~D~~~~~s~~~~~~-~~~~i~~~~~~~piivVgNK~Dl~~~-~~~~~-~~~~~~~~~~~~--~~~e~Sa~~~~------ 153 (199)
T cd04110 85 VYDVTNGESFVNVKR-WLQEIEQNCDDVCKVLVGNKNDDPER-KVVET-EDAYKFAGQMGI--SLFETSAKENI------ 153 (199)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECcccccc-cccCH-HHHHHHHHHcCC--EEEEEECCCCc------
Confidence 999999999999875 99988887778999999999999764 22222 233445555543 79999999999
Q ss_pred CCCChhhHHHHHHHHHHHh
Q 010254 173 SPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 173 ~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++++.|.+.+
T Consensus 154 ------gi~~lf~~l~~~~ 166 (199)
T cd04110 154 ------NVEEMFNCITELV 166 (199)
T ss_pred ------CHHHHHHHHHHHH
Confidence 9999998887755
No 76
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.91 E-value=1.7e-23 Score=189.44 Aligned_cols=139 Identities=14% Similarity=0.256 Sum_probs=119.6
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
++|+++|.+|||||||+++|..+.|...+.++.+..+..+.+.+++....+.+|||+|+++|.+++ ..+++++|++|+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~--~~y~~~ad~iIl 78 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT--SAYYRSAKGIIL 78 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHH--HHHhcCCCEEEE
Confidence 368999999999999999999999998888888888888888887445667799999999999887 678999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHc-CCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFL-VMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~-~~~~~ 513 (514)
|||+++++||+.+..|+..+..... .+.|+++||||+|+...+ +...+++++++++ ++.||
T Consensus 79 VfDvtd~~Sf~~l~~w~~~i~~~~~---~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~ 141 (202)
T cd04120 79 VYDITKKETFDDLPKWMKMIDKYAS---EDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFC 141 (202)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC---CCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEE
Confidence 9999999999999999988776542 279999999999997544 6677888899885 67665
No 77
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.91 E-value=2.8e-23 Score=183.72 Aligned_cols=159 Identities=18% Similarity=0.294 Sum_probs=122.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
.+||+|+|++|||||||+++|.++.+.....++.+... ....+....+.+.+|||||.+.+......+++.+|++++|
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv 82 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIA 82 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999998887554443332111 2223334457899999999988888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecC
Q 010254 94 YACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFN 172 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~ 172 (514)
||++++.+++.+.. |+..+.... .+.|+++|+||+|+... +....+ ....+++.++. ..++++||++|.
T Consensus 83 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~-~~~~e~Sa~~~~------ 152 (165)
T cd01864 83 YDITRRSSFESVPH-WIEEVEKYGASNVVLLLIGNKCDLEEQ-REVLFE-EACTLAEKNGM-LAVLETSAKESQ------ 152 (165)
T ss_pred EECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEECcccccc-cccCHH-HHHHHHHHcCC-cEEEEEECCCCC------
Confidence 99999999998875 888887653 47899999999999765 323322 33456665543 268999999999
Q ss_pred CCCChhhHHHHHHHHHHH
Q 010254 173 SPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 173 ~~l~~~~i~~L~~~i~~~ 190 (514)
|++++.+.+.+.
T Consensus 153 ------~v~~~~~~l~~~ 164 (165)
T cd01864 153 ------NVEEAFLLMATE 164 (165)
T ss_pred ------CHHHHHHHHHHh
Confidence 889888887654
No 78
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=2.8e-23 Score=188.08 Aligned_cols=161 Identities=20% Similarity=0.302 Sum_probs=125.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~-~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
+||+|+|++|||||||+++|++.++... +.++..... ....+....+.+.||||||.+.+......+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 5899999999999999999999886432 332222111 1233444568899999999988888788899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecC
Q 010254 94 YACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFN 172 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~ 172 (514)
+|++++.+++++.. |+..+.... .+.|+++|+||+|+... +....+ ....+...++. +++++||++|.
T Consensus 81 ~D~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~NK~Dl~~~-~~~~~~-~~~~l~~~~~~--~~~e~Sa~~~~------ 149 (191)
T cd04112 81 YDITNKASFDNIRA-WLTEIKEYAQEDVVIMLLGNKADMSGE-RVVKRE-DGERLAKEYGV--PFMETSAKTGL------ 149 (191)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEEcccchhc-cccCHH-HHHHHHHHcCC--eEEEEeCCCCC------
Confidence 99999999999886 888888765 36899999999999754 333322 34556666553 89999999999
Q ss_pred CCCChhhHHHHHHHHHHHhcCc
Q 010254 173 SPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 173 ~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
|++++.+.|.+.+...
T Consensus 150 ------~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 150 ------NVELAFTAVAKELKHR 165 (191)
T ss_pred ------CHHHHHHHHHHHHHHh
Confidence 9999999998877544
No 79
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.91 E-value=2.4e-23 Score=191.99 Aligned_cols=159 Identities=20% Similarity=0.221 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--ccccceeC-CeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT--RLPEDFYP-DRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t--t~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
+||+|+|++|||||||+|+|++..+...+.++.+.- .....+.. ..+.+.||||+|.+.+......+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999988765554432211 11122222 368899999999998888888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC----CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccce
Q 010254 94 YACDRPETLDELSTFWLPELRRLE----VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVK 169 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~~----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~ 169 (514)
||++++.+++.+.. |...+.+.. .+.|+++|+||+|+... +.+..+ ....+++.++. ++++|||++|.
T Consensus 81 ~D~t~~~s~~~~~~-w~~~l~~~~~~~~~~~piilVgNK~DL~~~-~~v~~~-~~~~~~~~~~~--~~~~iSAktg~--- 152 (215)
T cd04109 81 YDVTNSQSFENLED-WYSMVRKVLKSSETQPLVVLVGNKTDLEHN-RTVKDD-KHARFAQANGM--ESCLVSAKTGD--- 152 (215)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhccccCCCceEEEEEECcccccc-cccCHH-HHHHHHHHcCC--EEEEEECCCCC---
Confidence 99999999999875 998887753 24689999999999754 444333 34556666653 78999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHHhc
Q 010254 170 CFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 170 ~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++.+.+.+.+.
T Consensus 153 ---------gv~~lf~~l~~~l~ 166 (215)
T cd04109 153 ---------RVNLLFQQLAAELL 166 (215)
T ss_pred ---------CHHHHHHHHHHHHH
Confidence 99999998887654
No 80
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.91 E-value=4.1e-23 Score=183.09 Aligned_cols=158 Identities=20% Similarity=0.293 Sum_probs=122.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
+||+|+|++|||||||++++++.++.....+..+... ....+......+.+|||||.+++......+++.+|++++||
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~ 84 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 84 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 7999999999999999999999886554433222211 22334455678999999999888888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCC
Q 010254 95 ACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNS 173 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~ 173 (514)
|++++.+++.+.. |+..+++. .++.|+++|+||+|+... +....+ ....++...+. +++++||+++.
T Consensus 85 d~~~~~s~~~~~~-~~~~~~~~~~~~~pvivv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~e~Sa~~~~------- 152 (168)
T cd01866 85 DITRRETFNHLTS-WLEDARQHSNSNMTIMLIGNKCDLESR-REVSYE-EGEAFAKEHGL--IFMETSAKTAS------- 152 (168)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECcccccc-cCCCHH-HHHHHHHHcCC--EEEEEeCCCCC-------
Confidence 9999999999886 99888765 357999999999999754 233333 23445555543 79999999999
Q ss_pred CCChhhHHHHHHHHHHHh
Q 010254 174 PLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 174 ~l~~~~i~~L~~~i~~~~ 191 (514)
|++++...+.+.+
T Consensus 153 -----~i~~~~~~~~~~~ 165 (168)
T cd01866 153 -----NVEEAFINTAKEI 165 (168)
T ss_pred -----CHHHHHHHHHHHH
Confidence 8888888777654
No 81
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.90 E-value=2.4e-23 Score=185.88 Aligned_cols=160 Identities=22% Similarity=0.380 Sum_probs=123.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-cccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEe
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~-tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 95 (514)
+||+++|++|||||||+++|.++++...+.+.... .+....+....+.+.+|||||.+.+......+++.+|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999875554433221 11233344446778999999999888878888999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc-----------cchhHhhhhHHHHHHHhccCcEEEcCccc
Q 010254 96 CDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIECSALK 164 (514)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 164 (514)
++++.+++.+...|.+.++...+++|+++|+||+|+.+.. +.++. +....+++.++.. ++++|||++
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~-~~~e~Sa~~ 158 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTV-EQGQKLAKEIGAH-CYVECSALT 158 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCH-HHHHHHHHHcCCC-EEEEecCCc
Confidence 9999999999777999888766789999999999986542 11222 2334566666533 689999999
Q ss_pred cccceecCCCCChhhHHHHHHHHHHH
Q 010254 165 QIQVKCFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 165 ~~~~~~f~~~l~~~~i~~L~~~i~~~ 190 (514)
|. |++++.+.+...
T Consensus 159 ~~------------gi~~~f~~~~~~ 172 (174)
T cd04135 159 QK------------GLKTVFDEAILA 172 (174)
T ss_pred CC------------CHHHHHHHHHHH
Confidence 99 899988887654
No 82
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.90 E-value=3.5e-23 Score=184.03 Aligned_cols=160 Identities=22% Similarity=0.291 Sum_probs=122.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
...+||+++|++|||||||+++|+++.+.....+..+... ....+....+.+.||||||.+++......+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 3569999999999999999999999887554433222211 23344566788999999999998888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccc
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLE-----VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~ 166 (514)
+|||++++.+++.+.. |...+.... .+.|+++|+||+|+.. +....+ ....+++.++.. +++++||++|.
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~-~~~~~~~~~~~~-~~~e~Sa~~~~ 157 (170)
T cd04116 83 LTFAVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVVLGNKNDIPE--RQVSTE-EAQAWCRENGDY-PYFETSAKDAT 157 (170)
T ss_pred EEEECCCHHHHHhHHH-HHHHHHHhcccccCCCCcEEEEEECccccc--cccCHH-HHHHHHHHCCCC-eEEEEECCCCC
Confidence 9999999999998875 877665432 3689999999999863 233333 445566665432 78999999999
Q ss_pred cceecCCCCChhhHHHHHHHHHHH
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~~ 190 (514)
|+.++.+.+.+.
T Consensus 158 ------------~v~~~~~~~~~~ 169 (170)
T cd04116 158 ------------NVAAAFEEAVRR 169 (170)
T ss_pred ------------CHHHHHHHHHhh
Confidence 888888877653
No 83
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.7e-23 Score=179.76 Aligned_cols=156 Identities=24% Similarity=0.310 Sum_probs=129.7
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--cccccceeCCeeEEEEEeCCCCccchhhHHHhhhccC
Q 010254 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP--TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRAD 88 (514)
Q Consensus 11 ~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~--tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad 88 (514)
.....-+||+++|+++||||-|+.|+...+|.....++++- .|....++.+.++..||||+|+++++....+|++.|.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 34456799999999999999999999999986654443332 2355667788899999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccc
Q 010254 89 AVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQ 167 (514)
Q Consensus 89 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~ 167 (514)
++++|||++.+.+|+.+.. |+.+++... +++++++||||+||... |.+..++. ..+++..+- .++++||..+.|
T Consensus 89 GAllVYDITr~~Tfenv~r-WL~ELRdhad~nivimLvGNK~DL~~l-raV~te~~-k~~Ae~~~l--~f~EtSAl~~tN 163 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVER-WLKELRDHADSNIVIMLVGNKSDLNHL-RAVPTEDG-KAFAEKEGL--FFLETSALDATN 163 (222)
T ss_pred eeEEEEechhHHHHHHHHH-HHHHHHhcCCCCeEEEEeecchhhhhc-cccchhhh-HhHHHhcCc--eEEEeccccccc
Confidence 9999999999999999986 999999986 78999999999999885 66666544 556655443 789999999997
Q ss_pred c-eec
Q 010254 168 V-KCF 171 (514)
Q Consensus 168 ~-~~f 171 (514)
+ +.|
T Consensus 164 Ve~aF 168 (222)
T KOG0087|consen 164 VEKAF 168 (222)
T ss_pred HHHHH
Confidence 6 554
No 84
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.90 E-value=3.3e-23 Score=184.96 Aligned_cols=139 Identities=17% Similarity=0.213 Sum_probs=118.6
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|+++||||||+++|+.+.|...+.|+.+..+. +.+.+++......+|||+|+++|..+. +.+++++|++
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~--~~~~~~ad~~ 80 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVR--PLSYPDSDAV 80 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhh--hhhcCCCCEE
Confidence 4589999999999999999999999999888888876554 556666455667799999999998876 5789999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc------------c-ccchhhHHHHHHHcCC-cc
Q 010254 448 VFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDS------------F-AMAIQDSTRVFTFLVM-VL 512 (514)
Q Consensus 448 ilv~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~------------~-~~~~~~~~~~~~~~~~-~~ 512 (514)
++|||++++.||+.+ ..|+..+.... ++.|++|||||+||.. . .+..++++++|+++++ +|
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~----~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~ 156 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFC----PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATY 156 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC----CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEE
Confidence 999999999999997 79999987764 3699999999999864 1 2678899999999996 77
Q ss_pred c
Q 010254 513 Y 513 (514)
Q Consensus 513 ~ 513 (514)
+
T Consensus 157 ~ 157 (182)
T cd04172 157 I 157 (182)
T ss_pred E
Confidence 5
No 85
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=6e-24 Score=204.39 Aligned_cols=243 Identities=19% Similarity=0.184 Sum_probs=167.5
Q ss_pred CCCCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc---cccceeCCeeEEEEEeCCCCcc-chh-----
Q 010254 8 NSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR---LPEDFYPDRVPITIIDTPSSVE-DRG----- 78 (514)
Q Consensus 8 ~~~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt---~~~~~~~~~~~~~l~Dt~G~~~-~~~----- 78 (514)
...+..+.+++|+|+|+||||||||+|+|.+++ .++++..+||| ++..++..+++|.|.||+|+.+ ..+
T Consensus 260 ~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~d--rsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~ 337 (531)
T KOG1191|consen 260 DEIERLQSGLQIAIVGRPNVGKSSLLNALSRED--RSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEAL 337 (531)
T ss_pred hhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCC--ceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHH
Confidence 344556788999999999999999999999999 88899999999 6678889999999999999987 222
Q ss_pred ---hHHHhhhccCEEEEEEeCCCcccHHHHH-HHHHHHHHhcC-------CCCcEEEEEecccCcccccchhHhhhhHHH
Q 010254 79 ---KLGEELRRADAVVLTYACDRPETLDELS-TFWLPELRRLE-------VKVPVIVVGCKLDLRDENQQVSLEQVMMPI 147 (514)
Q Consensus 79 ---~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~l~~~~-------~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~ 147 (514)
..+..+.+||++++|+|+....+-++.. ...+....... .+.|++++.||+|+....+........ ..
T Consensus 338 gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~-~~ 416 (531)
T KOG1191|consen 338 GIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV-YP 416 (531)
T ss_pred hHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCcee-cc
Confidence 2355689999999999984333222222 01222222211 248999999999998763222221111 01
Q ss_pred HHHH-hccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCccc---CCCcchhhHHHHHHHHHhcCCcchhhH
Q 010254 148 MQQF-REIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREGVN---ERGLTLAGFLFLHALFIEKGRLETTWT 223 (514)
Q Consensus 148 ~~~~-~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~r~~~~~~ 223 (514)
.... +.+....++|+++++ |++.|.+.+.+.+..... ....+..+.+..+.+ +++..
T Consensus 417 ~~~~~~~~~i~~~vs~~tke------------g~~~L~~all~~~~~~~~~~~s~~~t~~~~r~~~~~-------r~~~~ 477 (531)
T KOG1191|consen 417 SAEGRSVFPIVVEVSCTTKE------------GCERLSTALLNIVERLVVSPHSAPPTLSQKRIKELL-------RTCAA 477 (531)
T ss_pred ccccCcccceEEEeeechhh------------hHHHHHHHHHHHHHHhhcCCCCCchhhcchhHHHHH-------Hhhhh
Confidence 1111 112245569999998 999999999887754433 223344444444444 33333
Q ss_pred -HHhhccCCCccccccCCCCCCCccCCCCCceecChhHH--HHHHHHHHhhcC
Q 010254 224 -VLRKFGYNNDIKLADELIPYSAFKRAPDQSVELTNEAI--DFLKGIFELFDA 273 (514)
Q Consensus 224 -~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~elt~~~~--~~L~~iF~~fd~ 273 (514)
.+.++-...++..+.++..+ +|+.+..+++++||.+. ++|+.||++|..
T Consensus 478 ~~l~~~~~~k~~~~D~~la~~-~lR~a~~~i~r~tggggte~vls~ifqkfci 529 (531)
T KOG1191|consen 478 PELERRFLAKQLKEDIDLAGE-PLRLAQRSIARITGGGGTEEVLSSIFQKFCI 529 (531)
T ss_pred hhHHHHHHhhhcccchhhccc-hHHHHHhhhcccCCCCchhhHHHHHHHHhhc
Confidence 45555555555666667765 99999999999999655 999999999963
No 86
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.90 E-value=4.7e-23 Score=181.49 Aligned_cols=157 Identities=24% Similarity=0.306 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT--RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t--t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
+||+|+|++|||||||+++|++.++.....+..... +....+....+.+.+|||||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 589999999999999999999988655443332221 123344455678999999999988888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCC
Q 010254 95 ACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNS 173 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~ 173 (514)
|++++.++..+.. |+..++... ++.|+++|+||+|+... +....+ ....++..++. +++++||+++.
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~------- 148 (161)
T cd04113 81 DITNRTSFEALPT-WLSDARALASPNIVVILVGNKSDLADQ-REVTFL-EASRFAQENGL--LFLETSALTGE------- 148 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEEchhcchh-ccCCHH-HHHHHHHHcCC--EEEEEECCCCC-------
Confidence 9999999999876 888776543 68999999999999764 333333 33455566552 89999999999
Q ss_pred CCChhhHHHHHHHHHHH
Q 010254 174 PLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 174 ~l~~~~i~~L~~~i~~~ 190 (514)
|++++.+.+.+.
T Consensus 149 -----~i~~~~~~~~~~ 160 (161)
T cd04113 149 -----NVEEAFLKCARS 160 (161)
T ss_pred -----CHHHHHHHHHHh
Confidence 999999888764
No 87
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.90 E-value=3e-23 Score=184.89 Aligned_cols=158 Identities=25% Similarity=0.381 Sum_probs=121.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEe
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLP-PTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~-~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 95 (514)
+||+++|++|||||||++++.++.+...+.++.. .......+....+.+.+|||||++.+......+++.+|++|+|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 5899999999999999999999887665544321 111233344446789999999999888877888999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc-----------cchhHhhhhHHHHHHHhccCcEEEcCccc
Q 010254 96 CDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIECSALK 164 (514)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 164 (514)
++++.+++.+...|+..++...++.|+++|+||+|+.... +.+.. +....+++.++. .++++|||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~a~~~~~-~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQ-SRAKALAEKIGA-CEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCH-HHHHHHHHHhCC-CeEEEEeCCC
Confidence 9999999998766998888765679999999999986531 22232 234556666542 3799999999
Q ss_pred cccceecCCCCChhhHHHHHHHHH
Q 010254 165 QIQVKCFNSPLQPSEIVGVKRVVQ 188 (514)
Q Consensus 165 ~~~~~~f~~~l~~~~i~~L~~~i~ 188 (514)
|. |++++.+.+.
T Consensus 159 ~~------------~v~~lf~~~~ 170 (173)
T cd04130 159 QK------------NLKEVFDTAI 170 (173)
T ss_pred CC------------CHHHHHHHHH
Confidence 99 8888877654
No 88
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.90 E-value=5.2e-23 Score=186.90 Aligned_cols=159 Identities=20% Similarity=0.274 Sum_probs=121.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPA-NVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~-~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
+||+|+|++|||||||+++|+++++.. .+.++.+... ....+....+.+.+|||+|.+++......+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988753 2333332221 1233444457788999999988888888889999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc---cchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 94 YACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN---QQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
||++++.+++.+.. |+..++...++.|+++|+||+|+.... +.... +....++..++. +++++||+++.
T Consensus 81 ~d~~~~~s~~~~~~-~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~-~~~~~~~~~~~~--~~~~~Sa~~~~---- 152 (193)
T cd04118 81 YDLTDSSSFERAKF-WVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDF-HDVQDFADEIKA--QHFETSSKTGQ---- 152 (193)
T ss_pred EECCCHHHHHHHHH-HHHHHHhcCCCCCEEEEEEcccccccccccCccCH-HHHHHHHHHcCC--eEEEEeCCCCC----
Confidence 99999999988765 999888766679999999999986531 12222 223445555443 78999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHh
Q 010254 171 FNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~ 191 (514)
|+++|.+.+.+.+
T Consensus 153 --------gv~~l~~~i~~~~ 165 (193)
T cd04118 153 --------NVDELFQKVAEDF 165 (193)
T ss_pred --------CHHHHHHHHHHHH
Confidence 9999998888755
No 89
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.90 E-value=4.6e-23 Score=192.56 Aligned_cols=159 Identities=18% Similarity=0.247 Sum_probs=120.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEe
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 95 (514)
+||+++|++|||||||+++|+++++...+.++...+. ....+....+.+.||||+|.+.+......++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 5899999999999999999999988665544433211 222344456889999999998888777778899999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhc----------CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccc
Q 010254 96 CDRPETLDELSTFWLPELRRL----------EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (514)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~----------~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~ 165 (514)
++++.+|+.+.. |...+... ..++|+|+|+||+|+... +.+..++ +..+...... ..+++|||++|
T Consensus 81 v~~~~Sf~~i~~-~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~-~~v~~~e-i~~~~~~~~~-~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCR-LREQILETKSCLKNKTKENVKIPMVICGNKADRDFP-REVQRDE-VEQLVGGDEN-CAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHH-HHHHHHHhhcccccccccCCCCcEEEEEECccchhc-cccCHHH-HHHHHHhcCC-CEEEEEeCCCC
Confidence 999999999875 77777542 247899999999999753 3333332 2333222111 26899999999
Q ss_pred ccceecCCCCChhhHHHHHHHHHHHh
Q 010254 166 IQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 166 ~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
. |++++++.|....
T Consensus 157 ~------------gI~elf~~L~~~~ 170 (247)
T cd04143 157 S------------NLDEMFRALFSLA 170 (247)
T ss_pred C------------CHHHHHHHHHHHh
Confidence 9 9999999988754
No 90
>PLN03118 Rab family protein; Provisional
Probab=99.90 E-value=1e-22 Score=187.37 Aligned_cols=169 Identities=25% Similarity=0.346 Sum_probs=127.4
Q ss_pred CCCCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhh
Q 010254 8 NSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELR 85 (514)
Q Consensus 8 ~~~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 85 (514)
-+.+.....+||+|+|++|||||||+++|++..+. .+.+..+... ....+....+.+.||||||++.+......+++
T Consensus 6 ~~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 84 (211)
T PLN03118 6 GQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYR 84 (211)
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHh
Confidence 34444456799999999999999999999998763 2322222111 12233445678999999999999888899999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcc
Q 010254 86 RADAVVLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (514)
Q Consensus 86 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 163 (514)
.+|++++|||++++.+++.+...|...+.... .+.|+++|+||+|+... +....+ ....+...++. ++++|||+
T Consensus 85 ~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~-~~i~~~-~~~~~~~~~~~--~~~e~SAk 160 (211)
T PLN03118 85 NAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE-RDVSRE-EGMALAKEHGC--LFLECSAK 160 (211)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc-CccCHH-HHHHHHHHcCC--EEEEEeCC
Confidence 99999999999999999999877877776542 36799999999999764 333322 23345555443 78999999
Q ss_pred ccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 164 KQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 164 ~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
++. |++++.+.|.+.+..
T Consensus 161 ~~~------------~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 161 TRE------------NVEQCFEELALKIME 178 (211)
T ss_pred CCC------------CHHHHHHHHHHHHHh
Confidence 999 999999998877643
No 91
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.90 E-value=6.7e-23 Score=185.23 Aligned_cols=159 Identities=21% Similarity=0.287 Sum_probs=123.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
+||+++|++|||||||+++|.++.+...+.++.+... ....+..+.+.+.+|||||.+.+......+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999988654444333222 22333445678999999999988888889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCC
Q 010254 95 ACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNS 173 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~ 173 (514)
|++++.++..+.. |+..+.... .+.|+++|+||+|+.+. +....+ ....++..++. +++++||++|.
T Consensus 81 d~~~~~s~~~i~~-~~~~i~~~~~~~~~~ivv~nK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~evSa~~~~------- 148 (188)
T cd04125 81 DVTDQESFENLKF-WINEINRYARENVIKVIVANKSDLVNN-KVVDSN-IAKSFCDSLNI--PFFETSAKQSI------- 148 (188)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECCCCccc-ccCCHH-HHHHHHHHcCC--eEEEEeCCCCC-------
Confidence 9999999999987 998888754 46899999999998754 222222 22345554433 79999999999
Q ss_pred CCChhhHHHHHHHHHHHhc
Q 010254 174 PLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 174 ~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++.+.+.+.+.
T Consensus 149 -----~i~~~f~~l~~~~~ 162 (188)
T cd04125 149 -----NVEEAFILLVKLII 162 (188)
T ss_pred -----CHHHHHHHHHHHHH
Confidence 88888887776553
No 92
>COG1159 Era GTPase [General function prediction only]
Probab=99.90 E-value=9e-23 Score=186.43 Aligned_cols=163 Identities=21% Similarity=0.271 Sum_probs=126.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc---cccceeCCeeEEEEEeCCCCccchhh--------HH
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR---LPEDFYPDRVPITIIDTPSSVEDRGK--------LG 81 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt---~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~ 81 (514)
.+.-.-|+|+|+||||||||+|+|+|.+ .++++..+.|| +...+..+...+.++||||+...... ..
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~K--isIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQK--ISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCc--eEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 3455789999999999999999999999 78888888888 55677778999999999999765432 34
Q ss_pred HhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcC
Q 010254 82 EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECS 161 (514)
Q Consensus 82 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 161 (514)
..+.++|+++||+|++.+... .+...++.++.. +.|+++++||+|...+... .......+ .....+..++++|
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~--~d~~il~~lk~~--~~pvil~iNKID~~~~~~~--l~~~~~~~-~~~~~f~~ivpiS 153 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGP--GDEFILEQLKKT--KTPVILVVNKIDKVKPKTV--LLKLIAFL-KKLLPFKEIVPIS 153 (298)
T ss_pred HHhccCcEEEEEEeccccCCc--cHHHHHHHHhhc--CCCeEEEEEccccCCcHHH--HHHHHHHH-HhhCCcceEEEee
Confidence 568999999999999875543 333477777774 7899999999998876210 12222222 2223344899999
Q ss_pred ccccccceecCCCCChhhHHHHHHHHHHHhcCccc
Q 010254 162 ALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREGVN 196 (514)
Q Consensus 162 a~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~~ 196 (514)
|++|. +++.|.+.+.+++|+++.
T Consensus 154 A~~g~------------n~~~L~~~i~~~Lpeg~~ 176 (298)
T COG1159 154 ALKGD------------NVDTLLEIIKEYLPEGPW 176 (298)
T ss_pred ccccC------------CHHHHHHHHHHhCCCCCC
Confidence 99999 999999999999998754
No 93
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.90 E-value=5.6e-24 Score=172.58 Aligned_cols=142 Identities=17% Similarity=0.194 Sum_probs=129.0
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...||++++|..-||||||+-|++.++|......|....|..+.+.+.+......||||+|+|+|..+- +-+|+++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALG--PIYYRgSnG 88 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALG--PIYYRGSNG 88 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccC--ceEEeCCCc
Confidence 356999999999999999999999999998887788788888999998666667799999999999887 789999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||++|++||+.+..|..+++...+. .+.++|||||+||.+++ +..++++.||+.-|+.|+
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~mlGn---ei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~ 153 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTMLGN---EIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYM 153 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHhCC---eeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhhe
Confidence 99999999999999999999999988644 68899999999999887 789999999999998876
No 94
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=5.8e-23 Score=183.10 Aligned_cols=137 Identities=16% Similarity=0.217 Sum_probs=116.2
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|.++.|...+.|+.+..+. +.+.+++......+|||+|++.|..+. +.+++++|++|+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~--~~~~~~a~~~il 78 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVR--PLCYPDSDAVLI 78 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcc--hhhcCCCCEEEE
Confidence 68999999999999999999999998888788776554 556666455566799999999998766 578899999999
Q ss_pred EEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc------------c-ccchhhHHHHHHHcCC-ccc
Q 010254 450 VHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDS------------F-AMAIQDSTRVFTFLVM-VLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~------------~-~~~~~~~~~~~~~~~~-~~~ 513 (514)
|||+++++||+.+ ..|+..+.... ++.|++|||||+||.. . .+..++++++|+++++ +||
T Consensus 79 vfdit~~~Sf~~~~~~w~~~i~~~~----~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~ 153 (178)
T cd04131 79 CFDISRPETLDSVLKKWRGEIQEFC----PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYL 153 (178)
T ss_pred EEECCChhhHHHHHHHHHHHHHHHC----CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEE
Confidence 9999999999996 79999887764 3799999999999964 1 2678899999999997 565
No 95
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.90 E-value=9.8e-23 Score=179.83 Aligned_cols=159 Identities=23% Similarity=0.310 Sum_probs=124.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT--RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t--t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
.+||+|+|++|||||||+|+|+++++.....+..+.. +....+....+.+.+|||||.+++......+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 3799999999999999999999998755333333221 23345556678999999999988888788889999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecC
Q 010254 94 YACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFN 172 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~ 172 (514)
+|++++.+++.... |+..+.... ++.|+++|+||+|+... +....+ ....+...++. +++++||++|.
T Consensus 81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~------ 149 (163)
T cd01860 81 YDITSEESFEKAKS-WVKELQRNASPNIIIALVGNKADLESK-RQVSTE-EAQEYADENGL--LFFETSAKTGE------ 149 (163)
T ss_pred EECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc-CcCCHH-HHHHHHHHcCC--EEEEEECCCCC------
Confidence 99999999988875 888777654 57899999999998754 222322 23445555542 79999999999
Q ss_pred CCCChhhHHHHHHHHHHHh
Q 010254 173 SPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 173 ~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++++.+.+.+
T Consensus 150 ------~v~~l~~~l~~~l 162 (163)
T cd01860 150 ------NVNELFTEIAKKL 162 (163)
T ss_pred ------CHHHHHHHHHHHh
Confidence 9999999988765
No 96
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.90 E-value=6e-23 Score=182.10 Aligned_cols=137 Identities=19% Similarity=0.307 Sum_probs=116.1
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|.++||||||+.+|+.+.|...+.+|.+..+. ..+.+++......+|||+|+++|..+. ..+++++|++|+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~--~~~~~~a~~~il 78 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLR--PLSYRGADVFVL 78 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCccccccc--hhhcCCCcEEEE
Confidence 68999999999999999999999999888888876654 455666444566799999999998876 578999999999
Q ss_pred EEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-----------cchhhHHHHHHHcCC-ccc
Q 010254 450 VHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-----------MAIQDSTRVFTFLVM-VLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~ 513 (514)
|||+++++||+.+ ..|+..+.... ++.|++|||||+|+.+.+ +..+++.++|+++++ .|+
T Consensus 79 vyd~~~~~Sf~~~~~~w~~~i~~~~----~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~ 151 (176)
T cd04133 79 AFSLISRASYENVLKKWVPELRHYA----PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYI 151 (176)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEE
Confidence 9999999999998 68999987654 279999999999996542 567889999999987 465
No 97
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.90 E-value=8.9e-23 Score=180.28 Aligned_cols=158 Identities=18% Similarity=0.268 Sum_probs=118.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCCCcc--cccce-eCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAAD--TFPANVPPVLPPTR--LPEDF-YPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~--~~~~~~~~~~~~tt--~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
+||+++|++|||||||+++|.+. .+...+.++.+... ....+ ....+.+.+|||||.+.+......+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 44344333222111 11222 245689999999999888888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceec
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCF 171 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f 171 (514)
+|||++++.++..+.. |+..+....++.|+++|+||+|+.+. +..... ....+...++. ++++|||+++.
T Consensus 81 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~----- 150 (164)
T cd04101 81 LVYDVSNKASFENCSR-WVNKVRTASKHMPGVLVGNKMDLADK-AEVTDA-QAQAFAQANQL--KFFKTSALRGV----- 150 (164)
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECcccccc-cCCCHH-HHHHHHHHcCC--eEEEEeCCCCC-----
Confidence 9999999999988875 99888876567999999999999654 222222 22334444433 78999999999
Q ss_pred CCCCChhhHHHHHHHHHHHh
Q 010254 172 NSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 172 ~~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++++.+.+.+
T Consensus 151 -------gi~~l~~~l~~~~ 163 (164)
T cd04101 151 -------GYEEPFESLARAF 163 (164)
T ss_pred -------ChHHHHHHHHHHh
Confidence 9999998887643
No 98
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.90 E-value=7.5e-23 Score=180.36 Aligned_cols=157 Identities=27% Similarity=0.422 Sum_probs=129.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEe
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 95 (514)
||+++|+++||||||+++|.+..+...+.++.+... ....+....+.+.|||++|.+.+.......++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999988666555432222 334445667889999999999888888889999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCC-CCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCCC
Q 010254 96 CDRPETLDELSTFWLPELRRLEV-KVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNSP 174 (514)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~ 174 (514)
++++.+++.+.. |++.+....+ +.|++||+||+|+.+. +.++.+ ....++++++. ++++|||+++.
T Consensus 81 ~~~~~S~~~~~~-~~~~i~~~~~~~~~iivvg~K~D~~~~-~~v~~~-~~~~~~~~~~~--~~~e~Sa~~~~-------- 147 (162)
T PF00071_consen 81 VTDEESFENLKK-WLEEIQKYKPEDIPIIVVGNKSDLSDE-REVSVE-EAQEFAKELGV--PYFEVSAKNGE-------- 147 (162)
T ss_dssp TTBHHHHHTHHH-HHHHHHHHSTTTSEEEEEEETTTGGGG-SSSCHH-HHHHHHHHTTS--EEEEEBTTTTT--------
T ss_pred cccccccccccc-ccccccccccccccceeeecccccccc-ccchhh-HHHHHHHHhCC--EEEEEECCCCC--------
Confidence 999999999995 9999998876 6999999999999874 445544 44677888773 99999999999
Q ss_pred CChhhHHHHHHHHHHHh
Q 010254 175 LQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 175 l~~~~i~~L~~~i~~~~ 191 (514)
++.++...+.+.+
T Consensus 148 ----~v~~~f~~~i~~i 160 (162)
T PF00071_consen 148 ----NVKEIFQELIRKI 160 (162)
T ss_dssp ----THHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHH
Confidence 8888887776654
No 99
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.90 E-value=1.2e-22 Score=180.05 Aligned_cols=160 Identities=25% Similarity=0.352 Sum_probs=123.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
.+||+++|++|||||||+++|.++.+...+.++.+... ....+....+++.+|||||.+.+......+++.+|++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 37999999999999999999999887555444333211 22234455688999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecC
Q 010254 95 ACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFN 172 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~ 172 (514)
|++++.+++.+.. |...+.+. ..+.|+++|+||+|+... +....+ ....+++.++.. +++++||+++.
T Consensus 81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~D~~~~-~~~~~~-~~~~~~~~~~~~-~~~~~SA~~~~------ 150 (168)
T cd04177 81 SVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLEDD-RQVSRE-DGVSLSQQWGNV-PFYETSARKRT------ 150 (168)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhhCCCCCCEEEEEEChhcccc-CccCHH-HHHHHHHHcCCc-eEEEeeCCCCC------
Confidence 9999999999876 87777653 247999999999999765 333333 234455565423 79999999999
Q ss_pred CCCChhhHHHHHHHHHHHh
Q 010254 173 SPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 173 ~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++.+.+..++
T Consensus 151 ------~i~~~f~~i~~~~ 163 (168)
T cd04177 151 ------NVDEVFIDLVRQI 163 (168)
T ss_pred ------CHHHHHHHHHHHH
Confidence 8888888887644
No 100
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.90 E-value=1.7e-23 Score=170.82 Aligned_cols=142 Identities=21% Similarity=0.283 Sum_probs=125.0
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcE-EEEEEecCChhHHHhhhcCccccccCcE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTK-KTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+.+++++||++-||||||+++|..+++...++||.|++|....+....|.. +..+|||+|+|+|+++. +.+|+++-+
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsit--ksyyrnsvg 84 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSIT--KSYYRNSVG 84 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHH--HHHhhcccc
Confidence 357999999999999999999999999999999999999988888865655 55699999999999998 799999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCC-CCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGF-EVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||+++++||+.+..|+.+...... +| ++-+.+||+|+||...+ +..++++++|..+||.|+
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~~q--~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FV 151 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMATQ--GPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFV 151 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHhcC--CCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEE
Confidence 9999999999999999999988655432 12 34468999999999877 789999999999999886
No 101
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.90 E-value=1.3e-22 Score=178.57 Aligned_cols=157 Identities=22% Similarity=0.307 Sum_probs=118.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
+||+++|++|||||||+|+|++.++.....+...... ....+....+.+.+|||||.+.+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999987554332221111 11223334578999999999988888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCC
Q 010254 95 ACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNS 173 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~ 173 (514)
|++++.+++.+.. |+..+.... .+.|+++|+||+|+... +....+ ....+.+..+. +++++||+++.
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilv~nK~D~~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~------- 148 (161)
T cd01861 81 DITNRQSFDNTDK-WIDDVRDERGNDVIIVLVGNKTDLSDK-RQVSTE-EGEKKAKELNA--MFIETSAKAGH------- 148 (161)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEEEChhcccc-CccCHH-HHHHHHHHhCC--EEEEEeCCCCC-------
Confidence 9999999999875 887766543 36999999999999643 233332 23444444432 79999999999
Q ss_pred CCChhhHHHHHHHHHHH
Q 010254 174 PLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 174 ~l~~~~i~~L~~~i~~~ 190 (514)
|++++.+.+.+.
T Consensus 149 -----~v~~l~~~i~~~ 160 (161)
T cd01861 149 -----NVKELFRKIASA 160 (161)
T ss_pred -----CHHHHHHHHHHh
Confidence 999999988764
No 102
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.90 E-value=1.4e-22 Score=179.31 Aligned_cols=140 Identities=15% Similarity=0.279 Sum_probs=119.8
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.+||+++|++|||||||+++|.++.+...+.++.+.++....+...+....+.+|||+|++.+.... ...++++|++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~i 79 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVT--RSYYRGAAGAL 79 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhcCCCEEE
Confidence 4799999999999999999999999988887787877877777777444566799999999998776 57889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+|||+++++||+.+..|+..+..... ++.|+++|+||+|+...+ ...+++.+++++++++|+
T Consensus 80 lv~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 142 (166)
T cd04122 80 MVYDITRRSTYNHLSSWLTDARNLTN---PNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFL 142 (166)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEE
Confidence 99999999999999999988766542 268999999999998765 567789999999888775
No 103
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.90 E-value=1e-22 Score=181.94 Aligned_cols=160 Identities=21% Similarity=0.404 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEe
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 95 (514)
.||+|+|++|||||||+++|.++.+...+.++..... ....+....+.+.+|||+|++.+......++.++|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 6899999999999999999999887655444332211 223444556789999999998887777778899999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccccc-----------chhHhhhhHHHHHHHhccCcEEEcCccc
Q 010254 96 CDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ-----------QVSLEQVMMPIMQQFREIETCIECSALK 164 (514)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 164 (514)
++++.+++.+...|...+++..+++|+++|+||+|+..... .+. ......+++.++.. ++++|||++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~-~~~~~~~~~~~~~~-~~~~~Sa~~ 159 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVK-PEEGRDMANKIGAF-GYMECSAKT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCcc-HHHHHHHHHHcCCc-EEEEecccc
Confidence 99999999987679988887666899999999999865310 011 12234445544422 799999999
Q ss_pred cccceecCCCCChhhHHHHHHHHHHH
Q 010254 165 QIQVKCFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 165 ~~~~~~f~~~l~~~~i~~L~~~i~~~ 190 (514)
|. |++++.+.+.+.
T Consensus 160 ~~------------~v~~lf~~l~~~ 173 (175)
T cd01870 160 KE------------GVREVFEMATRA 173 (175)
T ss_pred Cc------------CHHHHHHHHHHH
Confidence 99 999998888754
No 104
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=1e-22 Score=187.37 Aligned_cols=138 Identities=15% Similarity=0.210 Sum_probs=118.0
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.+||+++|++|||||||+++|+++.|...+.|+.+..+. ..+.+++....+.+|||+|++.|..+. +.+++++|++|
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~--~~~~~~ad~vI 89 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVR--PLCYSDSDAVL 89 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHH--HHHcCCCcEEE
Confidence 479999999999999999999999999988888877665 456666455667799999999998876 57899999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc-------------cccchhhHHHHHHHcCC-ccc
Q 010254 449 FVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDS-------------FAMAIQDSTRVFTFLVM-VLY 513 (514)
Q Consensus 449 lv~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~-~~~ 513 (514)
+|||+++++||+.+ ..|+..+.... ++.|++|||||+||.. ..+..++++++|+++++ .||
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~----~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~ 165 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYC----PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYL 165 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhC----CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEE
Confidence 99999999999985 89999987654 2689999999999964 23678899999999998 465
No 105
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.90 E-value=9.7e-23 Score=180.22 Aligned_cols=157 Identities=28% Similarity=0.379 Sum_probs=117.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-cccccceeCCeeEEEEEeCCCCcc-chhhHHHhhhccCEEEEEEe
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVE-DRGKLGEELRRADAVVLTYA 95 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~-tt~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~ad~ii~v~d 95 (514)
||+|+|++|||||||+++++++.+...+.+.... ......+....+.+.+|||||.+. .......+++.+|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 6899999999999999999988765444433221 112234445567899999999885 34456778999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccc-ccceec
Q 010254 96 CDRPETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ-IQVKCF 171 (514)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~-~~~~~f 171 (514)
++++.+++.+.. |...+.... .+.|+++|+||+|+... +....+ ....+++.++. ++++|||+++ .
T Consensus 81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~e~Sa~~~~~----- 150 (165)
T cd04146 81 ITDRSSFDEISQ-LKQLIREIKKRDREIPVILVGNKADLLHY-RQVSTE-EGEKLASELGC--LFFEVSAAEDYD----- 150 (165)
T ss_pred CCCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCchHHh-CccCHH-HHHHHHHHcCC--EEEEeCCCCCch-----
Confidence 999999998876 888777643 37999999999998654 333332 33455666653 8999999999 5
Q ss_pred CCCCChhhHHHHHHHHHHHh
Q 010254 172 NSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 172 ~~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++++.+.+.+
T Consensus 151 -------~v~~~f~~l~~~~ 163 (165)
T cd04146 151 -------GVHSVFHELCREV 163 (165)
T ss_pred -------hHHHHHHHHHHHH
Confidence 7888888877644
No 106
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.90 E-value=1.5e-22 Score=178.20 Aligned_cols=156 Identities=26% Similarity=0.365 Sum_probs=120.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
+||+|+|++|||||||+|+|.+..+.....+...... ....+....+.+.+|||||.+.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 6899999999999999999999886544443332221 22234455688999999999888877888899999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecC
Q 010254 95 ACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFN 172 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~ 172 (514)
|++++.+++.+.. |+..+.+.. .+.|+++|+||+|+... ....+ ....+....+. +++++||++|.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iv~nK~D~~~~--~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~------ 148 (161)
T cd01863 81 DVTRRDTFTNLET-WLNELETYSTNNDIVKMLVGNKIDKENR--EVTRE-EGLKFARKHNM--LFIETSAKTRD------ 148 (161)
T ss_pred ECCCHHHHHhHHH-HHHHHHHhCCCCCCcEEEEEECCccccc--ccCHH-HHHHHHHHcCC--EEEEEecCCCC------
Confidence 9999999998886 888887653 57999999999999743 22222 33455555543 79999999999
Q ss_pred CCCChhhHHHHHHHHHHH
Q 010254 173 SPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 173 ~~l~~~~i~~L~~~i~~~ 190 (514)
|++++++.+.+.
T Consensus 149 ------gi~~~~~~~~~~ 160 (161)
T cd01863 149 ------GVQQAFEELVEK 160 (161)
T ss_pred ------CHHHHHHHHHHh
Confidence 999998887654
No 107
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.90 E-value=6.2e-23 Score=181.58 Aligned_cols=157 Identities=12% Similarity=0.101 Sum_probs=113.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
+..+||+++|++|||||||+++|..+.+.. +.++.+. +. ..+....+.+.+|||||.+.+...+..+++++|++++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~-~~-~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGF-NV-ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCccc-ce-EEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 457999999999999999999998877532 2222211 11 12334578999999999998888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCcccccchhHhhhhHHHHH--HHhc-cCcEEEcCccccccce
Q 010254 94 YACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQ--QFRE-IETCIECSALKQIQVK 169 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~-~~~~i~~Sa~~~~~~~ 169 (514)
||++++.++.++...|...+... .+++|++||+||+|+... ...++ +..... .... ..++++|||++|.
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~-i~~~~~~~~~~~~~~~~~~~SAk~g~--- 156 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA---MKPHE-IQEKLGLTRIRDRNWYVQPSCATSGD--- 156 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC---CCHHH-HHHHcCCCccCCCcEEEEEeeCCCCC---
Confidence 99999989988876454555432 247899999999998653 12121 121111 1111 1157999999999
Q ss_pred ecCCCCChhhHHHHHHHHHH
Q 010254 170 CFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 170 ~f~~~l~~~~i~~L~~~i~~ 189 (514)
|++++.++|.+
T Consensus 157 ---------gv~~~~~~l~~ 167 (168)
T cd04149 157 ---------GLYEGLTWLSS 167 (168)
T ss_pred ---------ChHHHHHHHhc
Confidence 88888887754
No 108
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.89 E-value=1.3e-22 Score=179.23 Aligned_cols=159 Identities=25% Similarity=0.343 Sum_probs=122.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
+||+++|++|||||||+++|.+..+.....+..+... ....+....+.+.+|||||.+.+......+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999999886443333222111 22233344578999999999888888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCC
Q 010254 95 ACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNS 173 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~ 173 (514)
|++++.+++.+.. |+..+.... +++|+++|+||+|+... +....+ ....+.+.++. +++++||+++.
T Consensus 81 d~~~~~s~~~~~~-~l~~~~~~~~~~~pivvv~nK~D~~~~-~~~~~~-~~~~~~~~~~~--~~~e~Sa~~~~------- 148 (164)
T smart00175 81 DITNRESFENLKN-WLKELREYADPNVVIMLVGNKSDLEDQ-RQVSRE-EAEAFAEEHGL--PFFETSAKTNT------- 148 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEEchhcccc-cCCCHH-HHHHHHHHcCC--eEEEEeCCCCC-------
Confidence 9999999998886 988877654 57999999999998764 222222 33445555543 79999999999
Q ss_pred CCChhhHHHHHHHHHHHhc
Q 010254 174 PLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 174 ~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++.+.|.+.+.
T Consensus 149 -----~i~~l~~~i~~~~~ 162 (164)
T smart00175 149 -----NVEEAFEELAREIL 162 (164)
T ss_pred -----CHHHHHHHHHHHHh
Confidence 99999999887664
No 109
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.89 E-value=8.4e-23 Score=184.65 Aligned_cols=152 Identities=16% Similarity=0.247 Sum_probs=120.1
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCc
Q 010254 22 CGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRP 99 (514)
Q Consensus 22 vG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~ 99 (514)
+|++|||||||+++++.+.+...+.++.+... ....+....+.+.||||+|.+++...+..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999998887555544333211 2334445678999999999999998888999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCCCCChhh
Q 010254 100 ETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNSPLQPSE 179 (514)
Q Consensus 100 ~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~l~~~~ 179 (514)
.+++.+.. |++.+++..++.|++||+||+|+... .+..+ . ..+++..+. .+++|||++|. |
T Consensus 81 ~S~~~i~~-w~~~i~~~~~~~piilvgNK~Dl~~~--~v~~~-~-~~~~~~~~~--~~~e~SAk~~~------------~ 141 (200)
T smart00176 81 VTYKNVPN-WHRDLVRVCENIPIVLCGNKVDVKDR--KVKAK-S-ITFHRKKNL--QYYDISAKSNY------------N 141 (200)
T ss_pred HHHHHHHH-HHHHHHHhCCCCCEEEEEECcccccc--cCCHH-H-HHHHHHcCC--EEEEEeCCCCC------------C
Confidence 99999986 99999887778999999999998643 22222 2 234444433 79999999999 8
Q ss_pred HHHHHHHHHHHhc
Q 010254 180 IVGVKRVVQEKLR 192 (514)
Q Consensus 180 i~~L~~~i~~~~~ 192 (514)
++++.+++.+.+.
T Consensus 142 v~~~F~~l~~~i~ 154 (200)
T smart00176 142 FEKPFLWLARKLI 154 (200)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877654
No 110
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=1.7e-22 Score=185.26 Aligned_cols=160 Identities=22% Similarity=0.284 Sum_probs=122.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccce-eCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDF-YPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
.+||+|+|++|||||||+++|+++++.....++.+... ....+ ....+.+.+|||+|++.+......+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 48999999999999999999999887555433222111 11122 1335789999999999888888889999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 93 TYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
|||++++.+++++.. |+..+.+.. ...|++||+||+|+... +.+..+ ....+++.++. ++++|||++|.
T Consensus 82 v~D~~~~~Sf~~l~~-~~~~i~~~~~~~~~~iilvgNK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~e~Sak~g~---- 152 (211)
T cd04111 82 VFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKCDLESQ-RQVTRE-EAEKLAKDLGM--KYIETSARTGD---- 152 (211)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEccccccc-cccCHH-HHHHHHHHhCC--EEEEEeCCCCC----
Confidence 999999999999986 888776542 24778999999999764 333333 34566777663 89999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhc
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.+.
T Consensus 153 --------~v~e~f~~l~~~~~ 166 (211)
T cd04111 153 --------NVEEAFELLTQEIY 166 (211)
T ss_pred --------CHHHHHHHHHHHHH
Confidence 88888888876554
No 111
>PLN03110 Rab GTPase; Provisional
Probab=99.89 E-value=2e-22 Score=185.62 Aligned_cols=163 Identities=21% Similarity=0.258 Sum_probs=126.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
....+||+++|++|||||||+++|++..+...+.++.+... ..+.+....+.+.||||+|.+++......+++.+|++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 33568999999999999999999999887544433222211 2233445568999999999999888888999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccce
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVK 169 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~ 169 (514)
|+|||++++.+++.+.. |+..++... .+.|+++|+||+|+... +....+ ....+...++. +++++||++|.
T Consensus 89 ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~piiiv~nK~Dl~~~-~~~~~~-~~~~l~~~~~~--~~~e~SA~~g~--- 160 (216)
T PLN03110 89 LLVYDITKRQTFDNVQR-WLRELRDHADSNIVIMMAGNKSDLNHL-RSVAEE-DGQALAEKEGL--SFLETSALEAT--- 160 (216)
T ss_pred EEEEECCChHHHHHHHH-HHHHHHHhCCCCCeEEEEEEChhcccc-cCCCHH-HHHHHHHHcCC--EEEEEeCCCCC---
Confidence 99999999999998875 988887754 47999999999998654 333322 33455555543 89999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHHhc
Q 010254 170 CFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 170 ~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++.+.+...+.
T Consensus 161 ---------~v~~lf~~l~~~i~ 174 (216)
T PLN03110 161 ---------NVEKAFQTILLEIY 174 (216)
T ss_pred ---------CHHHHHHHHHHHHH
Confidence 88888888876654
No 112
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.89 E-value=1.7e-22 Score=165.02 Aligned_cols=150 Identities=22% Similarity=0.291 Sum_probs=121.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--ccccee-CCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFY-PDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
...+|++++|++-||||||+.+++.++|+.-..++.+.-- .-.++. ...+++.+|||+|+++++.....|++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 4578999999999999999999999998655433222111 111222 3468899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC--CCCc-EEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccc
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRLE--VKVP-VIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQ 167 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~p-vilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~ 167 (514)
++|||++++.+|+.+.. |+......- |.++ +.+||+|+||... |+++.++ .+++++..+. .++|+||++|.|
T Consensus 86 llvyditnr~sfehv~~-w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq-RqVt~EE-aEklAa~hgM--~FVETSak~g~N 160 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVEN-WVKEAAMATQGPDKVVFLLVGHKSDLQSQ-RQVTAEE-AEKLAASHGM--AFVETSAKNGCN 160 (213)
T ss_pred EEEEeccchhhHHHHHH-HHHHHHHhcCCCCeeEEEEeccccchhhh-ccccHHH-HHHHHHhcCc--eEEEecccCCCc
Confidence 99999999999999997 888776542 4444 5899999999977 8888775 4788888876 899999999996
Q ss_pred c
Q 010254 168 V 168 (514)
Q Consensus 168 ~ 168 (514)
|
T Consensus 161 V 161 (213)
T KOG0091|consen 161 V 161 (213)
T ss_pred H
Confidence 6
No 113
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.89 E-value=1.8e-22 Score=178.88 Aligned_cols=161 Identities=17% Similarity=0.170 Sum_probs=120.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~-~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
++.+||+++|++|||||||+++|+++.+. ..+.++..... ....+....+.+.+||++|.+.+......+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 67899999999999999999999999886 44444332211 2233445557899999999998887778889999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
++|||++++.+++.+.. |...+... .++|+++|+||+|+.+. +.... .....+.+.++. ..++++||+++.
T Consensus 82 llv~d~~~~~s~~~~~~-~~~~~~~~-~~~p~iiv~NK~Dl~~~-~~~~~-~~~~~~~~~~~~-~~~~~~Sa~~~~---- 152 (169)
T cd01892 82 CLVYDSSDPKSFSYCAE-VYKKYFML-GEIPCLFVAAKADLDEQ-QQRYE-VQPDEFCRKLGL-PPPLHFSSKLGD---- 152 (169)
T ss_pred EEEEeCCCHHHHHHHHH-HHHHhccC-CCCeEEEEEEccccccc-ccccc-cCHHHHHHHcCC-CCCEEEEeccCc----
Confidence 99999999988887764 77765432 37999999999999654 22211 123455555543 246999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHh
Q 010254 171 FNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++.+.+.+.+
T Consensus 153 --------~v~~lf~~l~~~~ 165 (169)
T cd01892 153 --------SSNELFTKLATAA 165 (169)
T ss_pred --------cHHHHHHHHHHHh
Confidence 8999988887754
No 114
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.89 E-value=2e-22 Score=179.07 Aligned_cols=159 Identities=23% Similarity=0.353 Sum_probs=119.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--ccccceeCCeeEEEEEeCCCCccch-hhHHHhhhccCEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT--RLPEDFYPDRVPITIIDTPSSVEDR-GKLGEELRRADAVVL 92 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t--t~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~ad~ii~ 92 (514)
.+||+++|++|||||||+++++++.+.....+..+.. .....+....+.+.+|||+|.+++. .....+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4899999999999999999999988654433322211 1223344556889999999998776 456778899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccc---ccc
Q 010254 93 TYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALK---QIQ 167 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~---~~~ 167 (514)
|||++++.+++.+.. |...+.... .+.|+++|+||+|+... +....+ ....+++.+.. ++++|||++ +.
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~e~Sa~~~~~~~- 155 (170)
T cd04115 82 VYDVTNMASFHSLPS-WIEECEQHSLPNEVPRILVGNKCDLREQ-IQVPTD-LAQRFADAHSM--PLFETSAKDPSEND- 155 (170)
T ss_pred EEECCCHHHHHhHHH-HHHHHHHhcCCCCCCEEEEEECccchhh-cCCCHH-HHHHHHHHcCC--cEEEEeccCCcCCC-
Confidence 999999999999986 998887653 46999999999998765 333332 33455555543 899999999 55
Q ss_pred ceecCCCCChhhHHHHHHHHHHHh
Q 010254 168 VKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 168 ~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
+++++...+.+.+
T Consensus 156 -----------~i~~~f~~l~~~~ 168 (170)
T cd04115 156 -----------HVEAIFMTLAHKL 168 (170)
T ss_pred -----------CHHHHHHHHHHHh
Confidence 7777777766544
No 115
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.89 E-value=1.2e-22 Score=180.71 Aligned_cols=160 Identities=25% Similarity=0.436 Sum_probs=121.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEe
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLP-PTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~-~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 95 (514)
+||+++|++|||||||+++|++.++.....+... ............+.+.+|||||++.+.......++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 6899999999999999999999987433322221 112223334557789999999999877777778899999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccch---------hHhhhhHHHHHHHhccCcEEEcCccccc
Q 010254 96 CDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQV---------SLEQVMMPIMQQFREIETCIECSALKQI 166 (514)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~Sa~~~~ 166 (514)
++++.++......|+..+....+++|+++|+||+|+....... ...+....+...++.. +++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAI-GYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCe-EEEEeecCCCC
Confidence 9999999988878999888776689999999999997652110 0122334455555433 79999999999
Q ss_pred cceecCCCCChhhHHHHHHHHHH
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~ 189 (514)
|++++.+.|.+
T Consensus 160 ------------gi~~l~~~i~~ 170 (171)
T cd00157 160 ------------GVKEVFEEAIR 170 (171)
T ss_pred ------------CHHHHHHHHhh
Confidence 99999888764
No 116
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.89 E-value=2.8e-22 Score=178.73 Aligned_cols=156 Identities=13% Similarity=0.109 Sum_probs=113.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
+..+||+++|++|||||||+++|..+.+. .+.++.+.. . ..+..+.+.+.+|||||.+.+...+..+++++|++|+|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~-~-~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFN-V-ETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccc-e-EEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 44699999999999999999999877653 222221111 1 12334578899999999999888888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc------cCcEEEcCccccc
Q 010254 94 YACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE------IETCIECSALKQI 166 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~Sa~~~~ 166 (514)
||++++.+++.....|...+... .++.|++||+||+|+.+.. ..+ ++.+.++. ...++++||++|.
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~----~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM---KAA----EITEKLGLHSIRDRNWYIQPTCATSGD 160 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC---CHH----HHHHHhCccccCCCcEEEEEeeCCCCC
Confidence 99999999988877444444432 2478999999999997541 111 12222211 0146789999999
Q ss_pred cceecCCCCChhhHHHHHHHHHHHh
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++.++|.+.+
T Consensus 161 ------------gv~e~~~~l~~~~ 173 (175)
T smart00177 161 ------------GLYEGLTWLSNNL 173 (175)
T ss_pred ------------CHHHHHHHHHHHh
Confidence 9999999887654
No 117
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.89 E-value=2.7e-22 Score=185.26 Aligned_cols=157 Identities=22% Similarity=0.248 Sum_probs=118.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCC-C-cccccceeCCeeEEEEEeCCCCccchhhHHHhhh-ccCEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLP-P-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELR-RADAVVL 92 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~-~~~~~~~~-~-tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~ad~ii~ 92 (514)
+||+++|++|||||||+++|+++.+. ..+.+..+ . ......+......+.+|||||.+ ......++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999988775 34443332 1 12333445567889999999987 222344566 8999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 93 TYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
|||++++.+++.+.. |+..+.... .++|+|+|+||+|+... +.+..++ ...++..++. ++++|||+++.
T Consensus 79 V~d~td~~S~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~-~~v~~~~-~~~~a~~~~~--~~~e~SA~~~~---- 149 (221)
T cd04148 79 VYSVTDRSSFERASE-LRIQLRRNRQLEDRPIILVGNKSDLARS-REVSVQE-GRACAVVFDC--KFIETSAGLQH---- 149 (221)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhcccc-ceecHHH-HHHHHHHcCC--eEEEecCCCCC----
Confidence 999999999998876 888777643 47999999999999765 4444332 3455555543 79999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhc
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.+...+.
T Consensus 150 --------gv~~l~~~l~~~~~ 163 (221)
T cd04148 150 --------NVDELLEGIVRQIR 163 (221)
T ss_pred --------CHHHHHHHHHHHHH
Confidence 99999998887664
No 118
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.89 E-value=3.1e-22 Score=177.35 Aligned_cols=141 Identities=16% Similarity=0.250 Sum_probs=120.8
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|.+.++...+.++.+.++....+..++....+.+|||+|++.+..+. ...++++|++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~--~~~~~~ad~~ 79 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTIT--TAYYRGAMGI 79 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHH--HHHhCCCCEE
Confidence 35899999999999999999999999999888888888877778777445567799999999888776 5788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++|||++++.||+.+..|+..+..... .+.|+++|+||+|+.+.+ ...+++.++++.++++|+
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd01867 80 ILVYDITDEKSFENIRNWMRNIEEHAS---EDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFL 143 (167)
T ss_pred EEEEECcCHHHHHhHHHHHHHHHHhCC---CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999877532 269999999999998654 556778889998888765
No 119
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.6e-23 Score=166.26 Aligned_cols=152 Identities=25% Similarity=0.340 Sum_probs=123.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
=+|++++|+.|.|||+|+.+++..++......+.+.-. .-+.+..+.+++.||||+|+++++...+.|++.|-+.++|
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV 88 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 88 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence 37999999999999999999999887655444332211 2223445678999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccc-eec
Q 010254 94 YACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV-KCF 171 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~-~~f 171 (514)
||++++++|+.+.. |+..++.+. +++-||+++||.||..+ |.++..+. ..++++.. + .+.|+||++|+|| ++|
T Consensus 89 YD~TsrdsfnaLtn-WL~DaR~lAs~nIvviL~GnKkDL~~~-R~VtflEA-s~FaqEne-l-~flETSa~TGeNVEEaF 163 (214)
T KOG0086|consen 89 YDITSRDSFNALTN-WLTDARTLASPNIVVILCGNKKDLDPE-REVTFLEA-SRFAQENE-L-MFLETSALTGENVEEAF 163 (214)
T ss_pred EeccchhhHHHHHH-HHHHHHhhCCCcEEEEEeCChhhcChh-hhhhHHHH-Hhhhcccc-e-eeeeecccccccHHHHH
Confidence 99999999999987 999999885 67889999999999988 77777754 44555432 2 6899999999988 665
Q ss_pred C
Q 010254 172 N 172 (514)
Q Consensus 172 ~ 172 (514)
-
T Consensus 164 l 164 (214)
T KOG0086|consen 164 L 164 (214)
T ss_pred H
Confidence 3
No 120
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.89 E-value=3.2e-22 Score=179.00 Aligned_cols=157 Identities=12% Similarity=0.119 Sum_probs=115.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
++.+||+++|++|||||||+++|..+.+.. +.++.+. .. ..+..+++.+.+|||||++.+...+..+++++|++|+|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~-~~-~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V 91 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF-NV-ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcce-eE-EEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 456899999999999999999999877643 2222221 11 12445678999999999998888889999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccC------cEEEcCccccc
Q 010254 94 YACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIE------TCIECSALKQI 166 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~Sa~~~~ 166 (514)
||++++.++......+...+... .++.|++||+||+|+... .. ...+...++... .+++|||++|.
T Consensus 92 ~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~---~~----~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~ 164 (181)
T PLN00223 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---MN----AAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC---CC----HHHHHHHhCccccCCCceEEEeccCCCCC
Confidence 99999998888776344333321 247999999999998764 11 123333333210 35689999999
Q ss_pred cceecCCCCChhhHHHHHHHHHHHhc
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++.++|.+.+.
T Consensus 165 ------------gv~e~~~~l~~~~~ 178 (181)
T PLN00223 165 ------------GLYEGLDWLSNNIA 178 (181)
T ss_pred ------------CHHHHHHHHHHHHh
Confidence 99999998877653
No 121
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.89 E-value=4.4e-22 Score=175.96 Aligned_cols=139 Identities=14% Similarity=0.240 Sum_probs=118.4
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|.+.++...+.++.+.++....+..++....+.+|||+|.+.+..++ ...++++|++++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~--~~~~~~~~~~l~ 79 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTIT--TAYYRGAMGFIL 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH--HHHccCCcEEEE
Confidence 799999999999999999999999988888888877777777666444567799999999988776 578899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
|||++++++|+.+..|+..+..... .+.|+++|+||+|+...+ +..+++.++++.+++++|
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (165)
T cd01865 80 MYDITNEESFNAVQDWSTQIKTYSW---DNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFF 141 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC---CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEE
Confidence 9999999999999999998876542 268999999999997655 456778889988888765
No 122
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.89 E-value=5.2e-22 Score=175.31 Aligned_cols=158 Identities=22% Similarity=0.330 Sum_probs=120.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEe
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t-t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 95 (514)
+||+++|++|||||||+++|++..+...+.+..... .....++.+.+.+.+|||||++.+...+..+++.+|++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 589999999999999999999988755444332221 1223344557889999999999998888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCC
Q 010254 96 CDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNS 173 (514)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~ 173 (514)
++++.++..... |...+... ..++|+++|+||+|+... +.... .....+.+.++. +++++||++|.
T Consensus 81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~D~~~~-~~~~~-~~~~~~~~~~~~--~~~~~Sa~~~~------- 148 (164)
T cd04139 81 ITDMESFTATAE-FREQILRVKDDDNVPLLLVGNKCDLEDK-RQVSS-EEAANLARQWGV--PYVETSAKTRQ------- 148 (164)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEccccccc-cccCH-HHHHHHHHHhCC--eEEEeeCCCCC-------
Confidence 999999988887 55555543 247999999999999763 11222 223345555543 89999999999
Q ss_pred CCChhhHHHHHHHHHHHh
Q 010254 174 PLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 174 ~l~~~~i~~L~~~i~~~~ 191 (514)
|++++++.+.+.+
T Consensus 149 -----gi~~l~~~l~~~~ 161 (164)
T cd04139 149 -----NVEKAFYDLVREI 161 (164)
T ss_pred -----CHHHHHHHHHHHH
Confidence 9999998887654
No 123
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.89 E-value=4.6e-22 Score=174.48 Aligned_cols=155 Identities=14% Similarity=0.114 Sum_probs=110.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeC
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYAC 96 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~ 96 (514)
+||+++|.+|||||||++++..+.+.. +.++.+. .. ..+..+.+.+.+|||||++++...+..+++++|++++|||+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~-~~-~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~ 77 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF-NV-ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCc-ce-EEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence 589999999999999999998877643 3222211 11 12334578999999999998888888999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCcccccchhHhhhhHHHHH-HHh-ccCcEEEcCccccccceecCC
Q 010254 97 DRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQ-QFR-EIETCIECSALKQIQVKCFNS 173 (514)
Q Consensus 97 ~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~Sa~~~~~~~~f~~ 173 (514)
+++.+++.....|...+... ..+.|++||+||+|+.+. ...++....+.. .+. ....+++|||++|.
T Consensus 78 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~------- 147 (159)
T cd04150 78 NDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA---MSAAEVTDKLGLHSLRNRNWYIQATCATSGD------- 147 (159)
T ss_pred CCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCCEEEEEeeCCCCC-------
Confidence 99989988876454444332 236899999999999653 111111111110 000 01146799999999
Q ss_pred CCChhhHHHHHHHHHH
Q 010254 174 PLQPSEIVGVKRVVQE 189 (514)
Q Consensus 174 ~l~~~~i~~L~~~i~~ 189 (514)
|++++.++|.+
T Consensus 148 -----gv~~~~~~l~~ 158 (159)
T cd04150 148 -----GLYEGLDWLSN 158 (159)
T ss_pred -----CHHHHHHHHhc
Confidence 99999888754
No 124
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.89 E-value=4.7e-22 Score=174.92 Aligned_cols=139 Identities=17% Similarity=0.258 Sum_probs=118.8
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|+++.+...+.++.+.++....+...+....+.+||++|++.+..+. ..+++.+|++++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~--~~~~~~~~~~i~ 78 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTIT--KQYYRRAQGIFL 78 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhH--HHHhcCCcEEEE
Confidence 479999999999999999999999988887888877777777777434556699999999988776 567899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
|||+++++||+.+..|+..+..... .+.|+++|+||.|+...+ +..+++..+++.++++|+
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~~---~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 140 (161)
T cd04117 79 VYDISSERSYQHIMKWVSDVDEYAP---EGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFF 140 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 9999999999999999998876542 269999999999997655 567889999999988875
No 125
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.88 E-value=5.1e-22 Score=181.35 Aligned_cols=142 Identities=17% Similarity=0.249 Sum_probs=118.4
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECC-CCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP-GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
+||+++|++|||||||+++|+++.+...+.++.+.++..+.+.++ +....+.+|||+|++.+..++ ..+++++|++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~a~~~i 78 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMT--RVYYRGAVGAI 78 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhH--HHHhCCCCEEE
Confidence 589999999999999999999999988888888888877777776 455667799999999998776 67889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCC-CCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcC-Cccc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGE-DTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLV-MVLY 513 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~-~~~~ 513 (514)
+|||+++++||+.+..|+..+..... ....++|++||+||+|+...+ +..+++.++++.++ ..|+
T Consensus 79 lv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 146 (201)
T cd04107 79 IVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWF 146 (201)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEE
Confidence 99999999999999999888765321 112379999999999997533 66788999999988 4553
No 126
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.88 E-value=4.8e-22 Score=176.59 Aligned_cols=139 Identities=15% Similarity=0.262 Sum_probs=116.0
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|.+|||||||+++|.++++...+.++.+..+. ..+.+++......+|||+|++.+..++ ..+++.+|++|+
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l~--~~~~~~~d~~il 79 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAMR--DQYMRCGEGFII 79 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHHh--HHHhhcCCEEEE
Confidence 79999999999999999999999998887777775554 445666344566699999999998877 578899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
|||++++.||+.+..|+..+...... +++|+++|+||+|+...+ +...++.+++++++++||
T Consensus 80 v~d~~~~~Sf~~~~~~~~~i~~~~~~--~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~ 142 (172)
T cd04141 80 CYSVTDRHSFQEASEFKKLITRVRLT--EDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFF 142 (172)
T ss_pred EEECCchhHHHHHHHHHHHHHHhcCC--CCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEE
Confidence 99999999999999988777664321 279999999999997654 667789999999999876
No 127
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.88 E-value=5.7e-22 Score=176.55 Aligned_cols=160 Identities=23% Similarity=0.325 Sum_probs=119.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
+||+|+|++|||||||+|+|.+..+.....+...... ....+....+.+.+|||||.+.+......+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999886444332222111 12233445677889999999888888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccce
Q 010254 95 ACDRPETLDELSTFWLPELRRLE-----VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVK 169 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~ 169 (514)
|++++.+++.... |...+.... .++|+++|+||+|+... +....+ ....+.+..+.. +++++||++|.
T Consensus 81 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~~-~~~~~Sa~~~~--- 153 (172)
T cd01862 81 DVTNPKSFESLDS-WRDEFLIQASPSDPENFPFVVLGNKIDLEEK-RQVSTK-KAQQWCQSNGNI-PYFETSAKEAI--- 153 (172)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCccCCCCceEEEEEECcccccc-cccCHH-HHHHHHHHcCCc-eEEEEECCCCC---
Confidence 9999998888764 776654432 27899999999999753 222222 334555555422 89999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHHhc
Q 010254 170 CFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 170 ~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.+.+.+.
T Consensus 154 ---------gv~~l~~~i~~~~~ 167 (172)
T cd01862 154 ---------NVEQAFETIARKAL 167 (172)
T ss_pred ---------CHHHHHHHHHHHHH
Confidence 99999998887554
No 128
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.88 E-value=9.7e-23 Score=173.49 Aligned_cols=145 Identities=19% Similarity=0.251 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeCCeeEEEEEeCCCCccchh------hHHHhh--h
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYPDRVPITIIDTPSSVEDRG------KLGEEL--R 85 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--~ 85 (514)
++|+++|.||||||||||+|+|.+ .. ++..|++|++. .+...+..+.++|+||...... ....++ .
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~--~~-v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~ 77 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK--QK-VGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSE 77 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS--EE-EEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--ce-ecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhc
Confidence 689999999999999999999998 33 45577888543 4555678999999999754332 223343 6
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccc
Q 010254 86 RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (514)
Q Consensus 86 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~ 165 (514)
+.|++++|+|++.. +.-. ++..++... ++|+++|+||+|+... +... .....+.+.++. |++++||+++
T Consensus 78 ~~D~ii~VvDa~~l---~r~l-~l~~ql~e~--g~P~vvvlN~~D~a~~-~g~~--id~~~Ls~~Lg~--pvi~~sa~~~ 146 (156)
T PF02421_consen 78 KPDLIIVVVDATNL---ERNL-YLTLQLLEL--GIPVVVVLNKMDEAER-KGIE--IDAEKLSERLGV--PVIPVSARTG 146 (156)
T ss_dssp SSSEEEEEEEGGGH---HHHH-HHHHHHHHT--TSSEEEEEETHHHHHH-TTEE--E-HHHHHHHHTS---EEEEBTTTT
T ss_pred CCCEEEEECCCCCH---HHHH-HHHHHHHHc--CCCEEEEEeCHHHHHH-cCCE--ECHHHHHHHhCC--CEEEEEeCCC
Confidence 89999999998763 2222 366777777 8999999999998765 2222 224567777765 9999999999
Q ss_pred ccceecCCCCChhhHHHHHHHH
Q 010254 166 IQVKCFNSPLQPSEIVGVKRVV 187 (514)
Q Consensus 166 ~~~~~f~~~l~~~~i~~L~~~i 187 (514)
. |+++|+++|
T Consensus 147 ~------------g~~~L~~~I 156 (156)
T PF02421_consen 147 E------------GIDELKDAI 156 (156)
T ss_dssp B------------THHHHHHHH
T ss_pred c------------CHHHHHhhC
Confidence 9 999999875
No 129
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.88 E-value=7.3e-22 Score=174.81 Aligned_cols=140 Identities=20% Similarity=0.319 Sum_probs=119.8
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.+||+++|++|||||||+++|.++.+...+.++.+.++....+...+....+.+||++|++.+.... ...++.+|++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--~~~~~~~~~ii 79 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT--SSYYRGAHGII 79 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHH--HHHhCcCCEEE
Confidence 4799999999999999999999999988887888888887878777444567799999999988776 57889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+|||+++++||..+..|+..+..... ++.|+++|+||+|+...+ +..+++..+++.++++++
T Consensus 80 ~v~d~~~~~s~~~l~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 142 (166)
T cd01869 80 IVYDVTDQESFNNVKQWLQEIDRYAS---ENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFL 142 (166)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCC---CCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEE
Confidence 99999999999999999999877542 268999999999987654 556788899999888775
No 130
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.88 E-value=7.3e-22 Score=173.93 Aligned_cols=158 Identities=20% Similarity=0.311 Sum_probs=119.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
+||+++|++|||||||+|+|++..+.....+...... ....+....+.+.+|||||.+.+......+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999886543322221111 12233344578999999999888888888899999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCC
Q 010254 95 ACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNS 173 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~ 173 (514)
|++++.+++.+.. |.+.+.... .++|+++|+||+|+... +.... +....+.+.++. +++++||+++.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~nK~D~~~~-~~~~~-~~~~~~~~~~~~--~~~~~s~~~~~------- 148 (162)
T cd04123 81 DITDADSFQKVKK-WIKELKQMRGNNISLVIVGNKIDLERQ-RVVSK-SEAEEYAKSVGA--KHFETSAKTGK------- 148 (162)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc-cCCCH-HHHHHHHHHcCC--EEEEEeCCCCC-------
Confidence 9999999988875 887777654 36899999999999854 22222 233445555543 78999999999
Q ss_pred CCChhhHHHHHHHHHHHh
Q 010254 174 PLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 174 ~l~~~~i~~L~~~i~~~~ 191 (514)
|++++.+++.+.+
T Consensus 149 -----gi~~~~~~l~~~~ 161 (162)
T cd04123 149 -----GIEELFLSLAKRM 161 (162)
T ss_pred -----CHHHHHHHHHHHh
Confidence 9999999887653
No 131
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.88 E-value=8.1e-22 Score=176.70 Aligned_cols=157 Identities=13% Similarity=0.158 Sum_probs=115.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
+.++||+++|++|||||||++++..+.+.. +.++.+ ... ..+..+++.+.+|||||.+.+...+..+++++|++|+|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~-~~~-~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIG-FNV-ETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccc-cce-EEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 456999999999999999999998777643 222221 111 12345678999999999998888889999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc--c----CcEEEcCccccc
Q 010254 94 YACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--I----ETCIECSALKQI 166 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~----~~~i~~Sa~~~~ 166 (514)
||++++.++......+...+... ..++|++||+||+|+... ...+ ++...++. . ..++++||++|.
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~----~i~~~l~~~~~~~~~~~~~~~Sa~tg~ 164 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA---MSTT----EVTEKLGLHSVRQRNWYIQGCCATTAQ 164 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC---CCHH----HHHHHhCCCcccCCcEEEEeeeCCCCC
Confidence 99999999988876455544431 236899999999998653 1111 12222211 0 146689999999
Q ss_pred cceecCCCCChhhHHHHHHHHHHHhc
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++.++|.+.+.
T Consensus 165 ------------gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 165 ------------GLYEGLDWLSANIK 178 (182)
T ss_pred ------------CHHHHHHHHHHHHH
Confidence 99999999887553
No 132
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.88 E-value=6.8e-22 Score=176.16 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=113.9
Q ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCE
Q 010254 10 GPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (514)
Q Consensus 10 ~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ 89 (514)
....+..++|+++|++|||||||+++|.+..+. .+.++.+.... .+..+++.+.+|||||++.+...+..+++.+|+
T Consensus 8 ~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~~~--~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 8 QKLKEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQIK--TLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred hhcCCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccceE--EEEECCEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 344456799999999999999999999988642 23222221111 222346889999999999888888889999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHH---hccCcEEEcCccc
Q 010254 90 VVLTYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF---REIETCIECSALK 164 (514)
Q Consensus 90 ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~Sa~~ 164 (514)
+++|||++++.++..... |+..+... ..+.|+++|+||+|+.... ..+ ....+.+.. ....++++|||++
T Consensus 85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKR-ELKELLQEERLAGATLLILANKQDLPGAL---SEE-EIREALELDKISSHHWRIQPCSAVT 159 (173)
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcccccCC---CHH-HHHHHhCccccCCCceEEEeccCCC
Confidence 999999999988888765 54444322 2579999999999997641 111 122222111 0112799999999
Q ss_pred cccceecCCCCChhhHHHHHHHHHH
Q 010254 165 QIQVKCFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 165 ~~~~~~f~~~l~~~~i~~L~~~i~~ 189 (514)
|. |++++.+++.+
T Consensus 160 g~------------gi~~l~~~l~~ 172 (173)
T cd04154 160 GE------------GLLQGIDWLVD 172 (173)
T ss_pred Cc------------CHHHHHHHHhc
Confidence 99 99998887753
No 133
>PLN03108 Rab family protein; Provisional
Probab=99.88 E-value=9.5e-22 Score=180.41 Aligned_cols=160 Identities=21% Similarity=0.267 Sum_probs=121.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
..+||+|+|++|||||||+|+|++.++.....++..... ....+....+.+.+|||+|.+.+......+++.+|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 358999999999999999999999887554333222211 122344446789999999999888888889999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceec
Q 010254 93 TYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCF 171 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f 171 (514)
|||++++.+++.+.. |+..+.... ++.|+++|+||+|+... +..+.+ ..+.+++.++. +++++||+++.
T Consensus 85 v~D~~~~~s~~~l~~-~~~~~~~~~~~~~piiiv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~e~Sa~~~~----- 154 (210)
T PLN03108 85 VYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHR-RAVSTE-EGEQFAKEHGL--IFMEASAKTAQ----- 154 (210)
T ss_pred EEECCcHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCccc-cCCCHH-HHHHHHHHcCC--EEEEEeCCCCC-----
Confidence 999999999998875 877766543 57999999999999764 333333 33456666543 89999999999
Q ss_pred CCCCChhhHHHHHHHHHHHh
Q 010254 172 NSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 172 ~~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++++.+.+.+
T Consensus 155 -------~v~e~f~~l~~~~ 167 (210)
T PLN03108 155 -------NVEEAFIKTAAKI 167 (210)
T ss_pred -------CHHHHHHHHHHHH
Confidence 7777766665543
No 134
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.88 E-value=7.8e-22 Score=177.92 Aligned_cols=162 Identities=25% Similarity=0.389 Sum_probs=121.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t-t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
+.||+|+|++|||||||+++|..+.+.....++.... .....+......+.+|||+|.+.+.......++.+|++++||
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 3699999999999999999999877644332211111 112233344567899999999877666566789999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc---------cchhHhhhhHHHHHHHhccCcEEEcCcccc
Q 010254 95 ACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN---------QQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~ 165 (514)
|++++.+++.+...|.+.+++..++.|+++|+||+|+.... +.+..+ ....+++.++.. ++++|||++|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~e~Sa~~~ 158 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQ-QGKRVAKEIGAK-KYMECSALTG 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHH-HHHHHHHHhCCc-EEEEccCCCC
Confidence 99999999999767999998776789999999999985421 122222 334566666532 7999999999
Q ss_pred ccceecCCCCChhhHHHHHHHHHHHh
Q 010254 166 IQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 166 ~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
. |++++.+.+.+.+
T Consensus 159 ~------------~v~~~f~~l~~~~ 172 (187)
T cd04129 159 E------------GVDDVFEAATRAA 172 (187)
T ss_pred C------------CHHHHHHHHHHHH
Confidence 9 9999998887654
No 135
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.88 E-value=9.6e-22 Score=173.85 Aligned_cols=140 Identities=17% Similarity=0.255 Sum_probs=119.7
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.+||+++|++|||||||+++|.+.++...+.++.+.++....+..++....+.+||++|++.+..+. ...++.++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~~~~i 80 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAIT--SAYYRGAVGAL 80 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHH--HHHHCCCCEEE
Confidence 4799999999999999999999999988888888888888888887444567799999999988776 57789999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+|||++++.+|+.+..|+..+...... +.|+++|+||+|+...+ ...++...+++..+++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDHADS---NIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFI 143 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECccccccccCCHHHHHHHHHHcCCEEE
Confidence 999999999999999999988776422 58999999999997654 456778888888887765
No 136
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.88 E-value=7.6e-22 Score=181.98 Aligned_cols=142 Identities=18% Similarity=0.208 Sum_probs=119.5
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCC-cEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGG-TKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
+||+++|++|||||||+++|.++.+...+.++.+.++....+.++++ ...+.+|||+|++.+..+. ..+++++|++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~--~~~~~~ad~ii 78 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKML--DKYIYGAHAVF 78 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHH--HHHhhcCCEEE
Confidence 58999999999999999999999998888888888887777877643 4567799999999888776 56789999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+|||+++++||+.+..|+..+.........+.|+++|+||+|+...+ +...++.++++.++++++
T Consensus 79 lV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~ 144 (215)
T cd04109 79 LVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESC 144 (215)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 99999999999999999998877543211257899999999997544 566788899999887765
No 137
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.88 E-value=1.2e-21 Score=175.92 Aligned_cols=142 Identities=11% Similarity=0.162 Sum_probs=118.5
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECC----------CCcEEEEEEecCChhHHHhhhcC
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP----------GGTKKTVVLREIPEEAVAKLLSN 437 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~dt~g~~~~~~~~~~ 437 (514)
..+||+++|++|||||||+++|.+..+...+.++.+.++....+... +....+.+|||+|++++..+.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-- 80 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLT-- 80 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHH--
Confidence 45899999999999999999999999988888888777766655543 134566799999999998876
Q ss_pred ccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 438 KDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 438 ~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
...++++|++++|||+++++||..+..|+..+...... ++.|+++|+||+|+...+ +..+++.+++++++++++
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 155 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYC--ENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYF 155 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEE
Confidence 57889999999999999999999999999988765321 268999999999997654 566788999999998775
No 138
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.88 E-value=7.3e-22 Score=178.54 Aligned_cols=138 Identities=22% Similarity=0.301 Sum_probs=114.1
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.+||+++|++|||||||+++|..+.|...+.++.+..+. ..+.+++....+.+|||+|+++|..++ ..+++++|++|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~--~~~~~~a~~~i 79 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLR--TLSYPQTNVFI 79 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhh--hhhccCCCEEE
Confidence 489999999999999999999999998888888876554 345566455567799999999999876 57889999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-------------cchhhHHHHHHHcC-Cccc
Q 010254 449 FVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-------------MAIQDSTRVFTFLV-MVLY 513 (514)
Q Consensus 449 lv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~-~~~~ 513 (514)
+|||++++.||+.+. .|+..+.... +++|++|||||.||...+ +..++++++|++++ ++||
T Consensus 80 lvydit~~~Sf~~~~~~w~~~i~~~~----~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~ 155 (191)
T cd01875 80 ICFSIASPSSYENVRHKWHPEVCHHC----PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYL 155 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEE
Confidence 999999999999996 6888776543 279999999999996532 34567889999988 4665
No 139
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.88 E-value=7.3e-22 Score=174.97 Aligned_cols=138 Identities=43% Similarity=0.624 Sum_probs=113.6
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCC-CCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCc
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFS-DNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 445 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d 445 (514)
|+++||+++|++|||||||+++|+++.+. ..+.+|.+.++....+.+++......+||++|++.+..+. ..+++++|
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~--~~~~~~~d 79 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLN--DAELAACD 79 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccc--hhhhhcCC
Confidence 67899999999999999999999999998 7788888888887888877444456688999988877655 56789999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMV 511 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~ 511 (514)
++++|||++++.+|+.+..|+..+.... ++|+++|+||+|+...+ +...+.+++++.+++.
T Consensus 80 ~~llv~d~~~~~s~~~~~~~~~~~~~~~-----~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 141 (169)
T cd01892 80 VACLVYDSSDPKSFSYCAEVYKKYFMLG-----EIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP 141 (169)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHhccCC-----CCeEEEEEEcccccccccccccCHHHHHHHcCCC
Confidence 9999999999999999988887654322 69999999999996544 3345677888888764
No 140
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.88 E-value=1e-21 Score=174.25 Aligned_cols=157 Identities=18% Similarity=0.189 Sum_probs=114.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCC
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACD 97 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~ 97 (514)
||+++|.+|||||||+++|.+..+.. +.++.+. ....+...++.+.+|||||.+.+...+..+++++|++++|+|++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~--~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s 77 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGF--NVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSS 77 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCce--eEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCC
Confidence 68999999999999999999986532 2221110 11134456789999999999988888888999999999999999
Q ss_pred CcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHh--c--cCcEEEcCccccccceec
Q 010254 98 RPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR--E--IETCIECSALKQIQVKCF 171 (514)
Q Consensus 98 ~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~--~~~~i~~Sa~~~~~~~~f 171 (514)
++.++.++.. |+..+.+. ..+.|++||+||+|+... ...++ ...+..... . ...+++|||++|.
T Consensus 78 ~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~g~----- 147 (169)
T cd04158 78 HRDRVSEAHS-ELAKLLTEKELRDALLLIFANKQDVAGA---LSVEE-MTELLSLHKLCCGRSWYIQGCDARSGM----- 147 (169)
T ss_pred cHHHHHHHHH-HHHHHhcChhhCCCCEEEEEeCcCcccC---CCHHH-HHHHhCCccccCCCcEEEEeCcCCCCC-----
Confidence 9999988876 55544332 235899999999999643 22222 222222111 1 1157899999999
Q ss_pred CCCCChhhHHHHHHHHHHHhcCc
Q 010254 172 NSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 172 ~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
|++++.++|.+.+.+.
T Consensus 148 -------gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 148 -------GLYEGLDWLSRQLVAA 163 (169)
T ss_pred -------CHHHHHHHHHHHHhhc
Confidence 9999999998877654
No 141
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.88 E-value=7.2e-22 Score=174.11 Aligned_cols=158 Identities=19% Similarity=0.185 Sum_probs=112.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCC
Q 010254 19 IVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDR 98 (514)
Q Consensus 19 I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~ 98 (514)
|+|+|++|||||||+++|.+..+...+.++.+.. ...+..+++.+.+|||||.+.+...+..+++++|++++|||+++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~ 79 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN--SVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc--eEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC
Confidence 7999999999999999999987655444433221 12345567899999999999998888999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhH---hhhhHHHHHHHhccCcEEEcCccccccceecCCCC
Q 010254 99 PETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSL---EQVMMPIMQQFREIETCIECSALKQIQVKCFNSPL 175 (514)
Q Consensus 99 ~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~l 175 (514)
+.++..... |+..+....+++|+++|+||+|+... +.... ......++++.+. .+++|||++.. ...
T Consensus 80 ~~s~~~~~~-~l~~~~~~~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~--~~~~~Sa~~~~------s~~ 149 (164)
T cd04162 80 SERLPLARQ-ELHQLLQHPPDLPLVVLANKQDLPAA-RSVQEIHKELELEPIARGRRW--ILQGTSLDDDG------SPS 149 (164)
T ss_pred HHHHHHHHH-HHHHHHhCCCCCcEEEEEeCcCCcCC-CCHHHHHHHhCChhhcCCCce--EEEEeeecCCC------Chh
Confidence 988888775 66666543468999999999998765 22211 1122333333222 67888888822 111
Q ss_pred ChhhHHHHHHHHH
Q 010254 176 QPSEIVGVKRVVQ 188 (514)
Q Consensus 176 ~~~~i~~L~~~i~ 188 (514)
..+|+.++.+.+.
T Consensus 150 ~~~~v~~~~~~~~ 162 (164)
T cd04162 150 RMEAVKDLLSQLI 162 (164)
T ss_pred HHHHHHHHHHHHh
Confidence 1127777776654
No 142
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.88 E-value=1.3e-21 Score=186.54 Aligned_cols=156 Identities=20% Similarity=0.210 Sum_probs=114.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccchh--------hHHHhhhc
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRG--------KLGEELRR 86 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~ 86 (514)
+|+|+|+||||||||+|+|++.++ +.++..++||.. .....++..+.+|||||+..... ....+++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~--~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI--SITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE--eecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 699999999999999999999884 445556666633 23334567799999999864321 12456889
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccc
Q 010254 87 ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (514)
Q Consensus 87 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~ 166 (514)
+|++++|+|+++..+.+ ..+...+... ++|+++|+||+|+... .........+.... .+.+++++||++|.
T Consensus 80 aDvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~---~~~~~~~~~~~~~~-~~~~v~~iSA~~g~ 150 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFK---DKLLPLIDKYAILE-DFKDIVPISALTGD 150 (270)
T ss_pred CCEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCH---HHHHHHHHHHHhhc-CCCceEEEecCCCC
Confidence 99999999999876654 2366777665 7999999999999743 11112222333322 23378999999999
Q ss_pred cceecCCCCChhhHHHHHHHHHHHhcCccc
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQEKLREGVN 196 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~~~~~~~~ 196 (514)
|+++|++.+.+.+++++.
T Consensus 151 ------------gi~~L~~~l~~~l~~~~~ 168 (270)
T TIGR00436 151 ------------NTSFLAAFIEVHLPEGPF 168 (270)
T ss_pred ------------CHHHHHHHHHHhCCCCCC
Confidence 999999999999987653
No 143
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.88 E-value=9.2e-22 Score=176.14 Aligned_cols=138 Identities=14% Similarity=0.218 Sum_probs=114.8
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|+++.+...+.+|.+.++..+.+.+++......+|||+|++.|..++ ..+++++|++++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~--~~~~~~a~~iil 78 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINML--PLVCNDAVAILF 78 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhh--HHHCcCCCEEEE
Confidence 489999999999999999999999998888888888877788887445567799999999998776 568899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc-----c-ccchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS-----F-AMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-----~-~~~~~~~~~~~~~~~~~~~ 513 (514)
|||++++.||+.+..|+..+...... ..| ++||||+|+.. . +....+++++++.++++|+
T Consensus 79 v~D~t~~~s~~~i~~~~~~~~~~~~~---~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 144 (182)
T cd04128 79 MFDLTRKSTLNSIKEWYRQARGFNKT---AIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLI 144 (182)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC---CCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEE
Confidence 99999999999999999988765321 467 68899999952 1 1234677889999888765
No 144
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.88 E-value=1.1e-21 Score=178.63 Aligned_cols=161 Identities=24% Similarity=0.331 Sum_probs=118.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeC
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYAC 96 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~ 96 (514)
||+++|++|||||||+++|++..+...+.++..... ....+....+.+.+|||||...+......++..+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999999999999999999887554433322111 2223333347899999999988888778899999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCCC
Q 010254 97 DRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNSP 174 (514)
Q Consensus 97 ~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~ 174 (514)
+++.+++.+.. |...+.... .++|+++|+||+|+....+....++..+.....+. .+++++||++|.
T Consensus 81 ~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~g~-------- 149 (198)
T cd04147 81 DDPESFEEVER-LREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWN--CGFVETSAKDNE-------- 149 (198)
T ss_pred CCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcC--CcEEEecCCCCC--------
Confidence 99999998875 776665543 37999999999999763232332222211111222 278999999999
Q ss_pred CChhhHHHHHHHHHHHhcC
Q 010254 175 LQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 175 l~~~~i~~L~~~i~~~~~~ 193 (514)
|++++++.+.+.+..
T Consensus 150 ----gv~~l~~~l~~~~~~ 164 (198)
T cd04147 150 ----NVLEVFKELLRQANL 164 (198)
T ss_pred ----CHHHHHHHHHHHhhc
Confidence 999999999887653
No 145
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.88 E-value=1.3e-21 Score=179.32 Aligned_cols=137 Identities=15% Similarity=0.172 Sum_probs=114.3
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|.++.|...+.||.+..+. ..+.+++....+.+|||+|++.|..+. +.+++++|++|+
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~--~~~~~~~d~ill 78 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVR--PLAYPDSDAVLI 78 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHh--HHhccCCCEEEE
Confidence 68999999999999999999999999888888877665 455666344556699999999998876 678999999999
Q ss_pred EEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC-ccc
Q 010254 450 VHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-VLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~-~~~ 513 (514)
|||+++++||+.+ ..|...+.... ++.|++|||||+|+... .+..+++.++++++++ +||
T Consensus 79 vfdis~~~Sf~~i~~~w~~~~~~~~----~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~ 153 (222)
T cd04173 79 CFDISRPETLDSVLKKWQGETQEFC----PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYV 153 (222)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEE
Confidence 9999999999999 56776665543 37999999999999652 2556789999999996 675
No 146
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.9e-22 Score=158.69 Aligned_cols=142 Identities=15% Similarity=0.273 Sum_probs=129.1
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+|.+|+|+-|||||+|+++|..++|....+.++++.|....+.+.+.+.+..||||+|+++|+.+. +.+++++-+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravt--rsyyrgaag 86 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT--RSYYRGAAG 86 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHH--HHHhccccc
Confidence 467899999999999999999999999999998899999999999999555667799999999999887 789999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
.++|||++.++++..+..|+...+... +|+..++++|||.||...+ +..+++++|+++.|+.|.
T Consensus 87 almvyditrrstynhlsswl~dar~lt---npnt~i~lignkadle~qrdv~yeeak~faeengl~fl 151 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLT---NPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFL 151 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccC---CCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEE
Confidence 999999999999999999998877664 3578899999999999877 889999999999998775
No 147
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.88 E-value=1.8e-21 Score=172.50 Aligned_cols=141 Identities=16% Similarity=0.244 Sum_probs=120.0
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||++++++..+...+.++.+.++....+...++...+.+||++|.+++..+. ...++.+|++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~i 80 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSIT--RSYYRGAAGA 80 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhccCCEE
Confidence 45899999999999999999999999988887888877777777777445567799999999988766 5788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++|||++++.||+.+..|+..+..... ++.|+++|+||+|+...+ ...++++.+++++++.|+
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQHSN---SNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFM 144 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC---CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 999999999999999999998876542 379999999999997544 567778889998888765
No 148
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.88 E-value=2.1e-21 Score=172.60 Aligned_cols=144 Identities=13% Similarity=0.202 Sum_probs=119.4
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|+++.+...+.++.+.++....+...+....+.+||++|++++..++ ..+++.+|++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--~~~~~~~d~~ 81 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLR--TPFYRGSDCC 81 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhH--HHHhcCCCEE
Confidence 46899999999999999999999999988777777777776777777455567799999999998877 5788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCC-CCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCC-ccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGED-TGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM-VLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~ 513 (514)
++|||+++++||+.+..|+..+...... ...++|+++|+||+|+........+++++++++++ +|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 149 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYF 149 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEE
Confidence 9999999999999999999887654321 12379999999999997545677889999998874 443
No 149
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.87 E-value=1.3e-21 Score=172.70 Aligned_cols=139 Identities=19% Similarity=0.261 Sum_probs=113.4
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||++++..+.+...+.++.+. ...+.+..++....+.+|||+|+++|..++ ..+++++|++++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~il 78 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQIEVDGQQCMLEILDTAGTEQFTAMR--DLYIKNGQGFVL 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCccccchHH--HHHhhcCCEEEE
Confidence 68999999999999999999999988777666653 444566666344556699999999998776 567899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
|||+++++||+.+..|+..+...... ++.|+++|+||+|+...+ ....+..++++.+++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (163)
T cd04136 79 VYSITSQSSFNDLQDLREQILRVKDT--ENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFY 141 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEECccccccceecHHHHHHHHHHcCCeEE
Confidence 99999999999999999888765322 279999999999997644 456677888888887765
No 150
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.87 E-value=2e-21 Score=177.03 Aligned_cols=140 Identities=19% Similarity=0.278 Sum_probs=119.7
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|.+..+...+.++.+.++....+.+.+....+.+||++|++.+..+. ..+++.+|++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~--~~~~~~a~~i 82 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTIT--STYYRGTHGV 82 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHH--HHHhCCCcEE
Confidence 46899999999999999999999999988887888888877888777444566799999999988776 5788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++|||+++++||+.+..|+..+.... +..|++||+||+|+...+ +...++.++++.++++||
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~----~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNC----DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLF 145 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999887654 268999999999997654 456778889988887765
No 151
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.87 E-value=2.2e-22 Score=163.34 Aligned_cols=166 Identities=21% Similarity=0.308 Sum_probs=132.1
Q ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--cccccceeCCeeEEEEEeCCCCccchhhHHHhhhcc
Q 010254 10 GPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP--TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRA 87 (514)
Q Consensus 10 ~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~--tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a 87 (514)
.....-.+||+++|..=||||||+-|++..+|...-.++... .+....+......+.||||+|++++...-.-|++.+
T Consensus 7 ~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS 86 (218)
T KOG0088|consen 7 VDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS 86 (218)
T ss_pred ccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence 334456799999999999999999999998885542221110 112223334456789999999999998888899999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccc
Q 010254 88 DAVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (514)
Q Consensus 88 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~ 166 (514)
+++++|||++++.+|+.+.. |...++++. ..+.++||+||+||... |.++.++ .+.+++..+. .++++||+.+.
T Consensus 87 nGalLVyDITDrdSFqKVKn-WV~Elr~mlGnei~l~IVGNKiDLEee-R~Vt~qe-Ae~YAesvGA--~y~eTSAk~N~ 161 (218)
T KOG0088|consen 87 NGALLVYDITDRDSFQKVKN-WVLELRTMLGNEIELLIVGNKIDLEEE-RQVTRQE-AEAYAESVGA--LYMETSAKDNV 161 (218)
T ss_pred CceEEEEeccchHHHHHHHH-HHHHHHHHhCCeeEEEEecCcccHHHh-hhhhHHH-HHHHHHhhch--hheeccccccc
Confidence 99999999999999999997 999999874 45889999999999887 7777664 3667777665 78999999999
Q ss_pred cceecCCCCChhhHHHHHHHHHHHhc
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
||.+|.+.+...+-
T Consensus 162 ------------Gi~elFe~Lt~~Mi 175 (218)
T KOG0088|consen 162 ------------GISELFESLTAKMI 175 (218)
T ss_pred ------------CHHHHHHHHHHHHH
Confidence 99998888776553
No 152
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.87 E-value=1.7e-21 Score=179.60 Aligned_cols=140 Identities=14% Similarity=0.177 Sum_probs=117.6
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+||+++|++|||||||+++++.+++...+.++.+.++....+..+++...+.+|||+|++.|..++ ..+++++|+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~ 88 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--DGYYIHGQC 88 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhh--HHHcccccE
Confidence 456899999999999999999999999988888888877776666666455677799999999998776 567899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
+|+|||+++++||+.+..|+..+.... ++.|++|||||+|+....+...+. +++++.+++||
T Consensus 89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~----~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~ 150 (219)
T PLN03071 89 AIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYY 150 (219)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC----CCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEE
Confidence 999999999999999999999987654 279999999999997544444444 78888888775
No 153
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.87 E-value=2.2e-21 Score=172.02 Aligned_cols=139 Identities=19% Similarity=0.250 Sum_probs=115.8
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 450 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv 450 (514)
||+++|++|||||||+++|+++.+...+.++.+..+..+.+.+.+....+.+|||+|+++|..+. ...++++|++++|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~~ilv 79 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIA--STYYRGAQAIIIV 79 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhH--HHHhcCCCEEEEE
Confidence 79999999999999999999999998888888877777777777445567799999999998776 6788999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc---chhhHHHHHHHcCCccc
Q 010254 451 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM---AIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 451 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~ 513 (514)
||+++++||+.+..|+..+...... .+.|+++|+||+|+..... ...++.+++++++++|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (170)
T cd04108 80 FDLTDVASLEHTRQWLEDALKENDP--SSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYW 143 (170)
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCC--CCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEE
Confidence 9999999999999999987654322 1578999999999965432 35567788888888765
No 154
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.87 E-value=1.4e-21 Score=175.56 Aligned_cols=160 Identities=18% Similarity=0.202 Sum_probs=113.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccce---eCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDF---YPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
+.+||+++|++|||||||++++.+..+....+ +.+.......+ ...++.+.+|||||.+.+...+..+++.+|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVP-TKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCC-ccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 46899999999999999999999887654322 12111111122 235689999999999988888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHH--HHhcc--CcEEEcCcccc
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQ--QFREI--ETCIECSALKQ 165 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~~--~~~i~~Sa~~~ 165 (514)
+|+|++++.+++.+.. |+..+.... .++|+++|+||+|+... ...++ ...+.. .+... .++++|||++|
T Consensus 81 ~v~D~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~NK~D~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~SA~~~ 155 (183)
T cd04152 81 FVVDSVDVERMEEAKT-ELHKITRFSENQGVPVLVLANKQDLPNA---LSVSE-VEKLLALHELSASTPWHVQPACAIIG 155 (183)
T ss_pred EEEECCCHHHHHHHHH-HHHHHHhhhhcCCCcEEEEEECcCcccc---CCHHH-HHHHhCccccCCCCceEEEEeecccC
Confidence 9999999888877765 655554321 37999999999998653 11111 111111 11111 15789999999
Q ss_pred ccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 166 IQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 166 ~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
. |++++.+.|.+.+.
T Consensus 156 ~------------gi~~l~~~l~~~l~ 170 (183)
T cd04152 156 E------------GLQEGLEKLYEMIL 170 (183)
T ss_pred C------------CHHHHHHHHHHHHH
Confidence 9 99999998887653
No 155
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.87 E-value=1.9e-21 Score=175.54 Aligned_cols=141 Identities=16% Similarity=0.036 Sum_probs=113.6
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECC-----CCcEEEEEEecCChhHHHhhhcCccccccC
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP-----GGTKKTVVLREIPEEAVAKLLSNKDSLAAC 444 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~ 444 (514)
+||+++|+++||||||+++|+++.+...+.+|.+.++.++.+.+. +......+|||+|+++|..+. ..+++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~--~~~yr~a 78 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTR--AVFYNQV 78 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHH--HHHhCcC
Confidence 489999999999999999999999988888888877777776654 133456699999999998876 6789999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhcCC----------------CCCCCCcEEEEEeCCCCcccc-cc----hhhHHH
Q 010254 445 DIAVFVHDSSDESSWKRATELLVEVASYGE----------------DTGFEVPCLIVAAKDDLDSFA-MA----IQDSTR 503 (514)
Q Consensus 445 d~vilv~D~~~~~s~~~~~~~~~~~~~~~~----------------~~~~~~p~ilv~nK~Dl~~~~-~~----~~~~~~ 503 (514)
|++|+|||+++++||+.+..|+..+..... ....++|++|||||.|+.+++ +. ......
T Consensus 79 d~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ 158 (202)
T cd04102 79 NGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGF 158 (202)
T ss_pred CEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhh
Confidence 999999999999999999999999865321 012369999999999997654 22 234556
Q ss_pred HHHHcCCcc
Q 010254 504 VFTFLVMVL 512 (514)
Q Consensus 504 ~~~~~~~~~ 512 (514)
+|++.+++.
T Consensus 159 ia~~~~~~~ 167 (202)
T cd04102 159 VAEQGNAEE 167 (202)
T ss_pred HHHhcCCce
Confidence 788888764
No 156
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.87 E-value=2e-21 Score=171.19 Aligned_cols=138 Identities=17% Similarity=0.267 Sum_probs=116.9
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECC--CCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP--GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
+||+++|++|||||||+++|.++.+...+.++.+.++....+.+. +....+.+|||+|++.+..+. ..+++.+|++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--~~~~~~~~~~ 78 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAIT--KAYYRGAQAC 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhH--HHHhcCCCEE
Confidence 489999999999999999999999888777787777765655554 455677899999999998876 5788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++|||+++++||+.+..|+..+.... .++|+++|+||+|+..++ +..+++.++++.+++++|
T Consensus 79 v~v~d~~~~~s~~~l~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 141 (162)
T cd04106 79 ILVFSTTDRESFEAIESWKEKVEAEC----GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLF 141 (162)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEE
Confidence 99999999999999999998886643 279999999999997654 556778899999998875
No 157
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.87 E-value=2.2e-21 Score=170.14 Aligned_cols=150 Identities=14% Similarity=0.103 Sum_probs=108.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCC
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACD 97 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~ 97 (514)
||+++|++|||||||+++|..+.+... .++.+. +. ..+...+..+.+|||||.+.+...+..+++.+|++++|+|++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-~~t~~~-~~-~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~ 77 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT-IPTIGF-NV-ETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDST 77 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc-CCccCc-Ce-EEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECC
Confidence 689999999999999999988775432 211111 11 123345788999999999988888888999999999999999
Q ss_pred CcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc------cCcEEEcCcccccccee
Q 010254 98 RPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE------IETCIECSALKQIQVKC 170 (514)
Q Consensus 98 ~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~Sa~~~~~~~~ 170 (514)
++.++......|...++.. ..++|+++|+||+|+.+.. ... ++...++. ..++++|||++|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~---~~~----~i~~~~~~~~~~~~~~~~~~~Sa~~~~---- 146 (158)
T cd04151 78 DRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL---SEA----EISEKLGLSELKDRTWSIFKTSAIKGE---- 146 (158)
T ss_pred CHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC---CHH----HHHHHhCccccCCCcEEEEEeeccCCC----
Confidence 8877776665455555432 2479999999999987541 111 12222211 1159999999999
Q ss_pred cCCCCChhhHHHHHHHHHH
Q 010254 171 FNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~ 189 (514)
|++++++.+.+
T Consensus 147 --------gi~~l~~~l~~ 157 (158)
T cd04151 147 --------GLDEGMDWLVN 157 (158)
T ss_pred --------CHHHHHHHHhc
Confidence 99999888754
No 158
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.87 E-value=1.1e-21 Score=173.01 Aligned_cols=156 Identities=17% Similarity=0.212 Sum_probs=109.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeC
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTF-PANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYAC 96 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~-~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~ 96 (514)
+|+++|++|||||||+++|.+..+ ...+.++.+ .+. ..+..++.++.+|||||.+++...+..+++.+|++++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g-~~~-~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~ 78 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVG-FNV-ESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDS 78 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccc-cce-EEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeC
Confidence 589999999999999999998753 223333322 121 12345678899999999999888889999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhc----CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecC
Q 010254 97 DRPETLDELSTFWLPELRRL----EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFN 172 (514)
Q Consensus 97 ~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~ 172 (514)
+++.++..... |+..+.+. ..++|+++|+||+|+..........+. ..+........++++|||++|.
T Consensus 79 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~-l~~~~~~~~~~~~~~~Sa~~g~------ 150 (162)
T cd04157 79 SDRLRLVVVKD-ELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQL-LGLENIKDKPWHIFASNALTGE------ 150 (162)
T ss_pred CcHHHHHHHHH-HHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHH-hCCccccCceEEEEEeeCCCCC------
Confidence 99888877664 55554332 147999999999999764111111110 0011000011158999999999
Q ss_pred CCCChhhHHHHHHHHHH
Q 010254 173 SPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 173 ~~l~~~~i~~L~~~i~~ 189 (514)
|++++.++|.+
T Consensus 151 ------gv~~~~~~l~~ 161 (162)
T cd04157 151 ------GLDEGVQWLQA 161 (162)
T ss_pred ------chHHHHHHHhc
Confidence 99999888754
No 159
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.87 E-value=2.3e-21 Score=171.91 Aligned_cols=142 Identities=15% Similarity=0.194 Sum_probs=119.0
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|+++++...+.++.+.++..+.+...+....+.+|||+|.+.+..+. ...++++|++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~il 78 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVR--NEFYKDTQGVLL 78 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHH--HHHhccCCEEEE
Confidence 489999999999999999999999988888888888877778777555666799999998888766 577899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCC--CCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGED--TGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~--~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
|||++++.+|+.+..|+..+...... ...+.|+++|+||+|+..++ ....+.+++++++++++|
T Consensus 79 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (168)
T cd04119 79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYF 145 (168)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEE
Confidence 99999999999999999988776432 01269999999999997433 567777888988887765
No 160
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.2e-21 Score=157.49 Aligned_cols=157 Identities=23% Similarity=0.299 Sum_probs=119.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
=+||+++|..|||||+|+.+++.+-|++....+++.-. ..+++..+.+++.||||+|+++++...+.|++.|+++|+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 47999999999999999999998887554333222111 3345557789999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCC-CCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecC
Q 010254 94 YACDRPETLDELSTFWLPELRRLEV-KVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFN 172 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~ 172 (514)
||+++..+|+-+.+ |+..+..+.. +.--|+|+||+|+.+. |.+... .-+++.+.-. .-++++||+...
T Consensus 87 ydiscqpsfdclpe-wlreie~yan~kvlkilvgnk~d~~dr-revp~q-igeefs~~qd--myfletsakea~------ 155 (213)
T KOG0095|consen 87 YDISCQPSFDCLPE-WLREIEQYANNKVLKILVGNKIDLADR-REVPQQ-IGEEFSEAQD--MYFLETSAKEAD------ 155 (213)
T ss_pred EecccCcchhhhHH-HHHHHHHHhhcceEEEeeccccchhhh-hhhhHH-HHHHHHHhhh--hhhhhhcccchh------
Confidence 99999999998886 9999998863 4556999999999876 333322 2233433321 257899999999
Q ss_pred CCCChhhHHHHHHHHHH
Q 010254 173 SPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 173 ~~l~~~~i~~L~~~i~~ 189 (514)
+++.|...+.-
T Consensus 156 ------nve~lf~~~a~ 166 (213)
T KOG0095|consen 156 ------NVEKLFLDLAC 166 (213)
T ss_pred ------hHHHHHHHHHH
Confidence 66666655543
No 161
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=3e-21 Score=177.07 Aligned_cols=141 Identities=20% Similarity=0.257 Sum_probs=119.4
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCC-cEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGG-TKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
.+||+++|++|||||||+++|+++.+...+.++.+.++..+.+.+.++ .....+|||+|++.+..+. ..+++++|++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~i 79 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSIT--RSYYRNSVGV 79 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHH--HHHhcCCcEE
Confidence 489999999999999999999999998888888888887777776434 3456799999999988776 5788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++|||+++++||+.+..|+..+...... ...|++||+||+|+...+ +...++.++++.++++|+
T Consensus 80 ilv~D~~~~~Sf~~l~~~~~~i~~~~~~--~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 144 (211)
T cd04111 80 LLVFDITNRESFEHVHDWLEEARSHIQP--HRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYI 144 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEE
Confidence 9999999999999999999988765322 157899999999997654 567788999999988775
No 162
>PLN00023 GTP-binding protein; Provisional
Probab=99.87 E-value=2.7e-21 Score=182.21 Aligned_cols=144 Identities=16% Similarity=0.130 Sum_probs=118.7
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCC-------------CcEEEEEEecCChhHHH
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPG-------------GTKKTVVLREIPEEAVA 432 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~dt~g~~~~~ 432 (514)
....+||+++|+.|||||||+++|+++.+...+.+|.+..+.++.+.+.+ ....+.+|||+|++.|.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 34568999999999999999999999999888888888887777766542 23456699999999999
Q ss_pred hhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCC---------CCCCCcEEEEEeCCCCcccc-------c
Q 010254 433 KLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGED---------TGFEVPCLIVAAKDDLDSFA-------M 496 (514)
Q Consensus 433 ~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~---------~~~~~p~ilv~nK~Dl~~~~-------~ 496 (514)
.++ ..+++++|++|+|||+++++||+.+..|+..+...... .+.++|++|||||+||..++ +
T Consensus 98 sL~--~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~ 175 (334)
T PLN00023 98 DCR--SLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN 175 (334)
T ss_pred hhh--HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence 887 57899999999999999999999999999998765310 11258999999999997642 1
Q ss_pred chhhHHHHHHHcCCc
Q 010254 497 AIQDSTRVFTFLVMV 511 (514)
Q Consensus 497 ~~~~~~~~~~~~~~~ 511 (514)
..+++++||+++++.
T Consensus 176 ~~e~a~~~A~~~g~l 190 (334)
T PLN00023 176 LVDAARQWVEKQGLL 190 (334)
T ss_pred cHHHHHHHHHHcCCC
Confidence 468899999998863
No 163
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.87 E-value=2.4e-21 Score=169.84 Aligned_cols=155 Identities=25% Similarity=0.370 Sum_probs=118.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccc--ccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRL--PEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~--~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
+||+++|++|||||||+|+|.+..+.....++...... ..........+.+||+||.+.+......+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999998865543332222122 2223345688999999999888888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCC
Q 010254 95 ACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNS 173 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~ 173 (514)
|++++.+++.+.. |+..+.... .+.|+++|+||+|+... ..... +....+...... +++++||+++.
T Consensus 81 d~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~-~~~~~~~~~~~~--~~~~~sa~~~~------- 148 (159)
T cd00154 81 DITNRESFENLDK-WLKELKEYAPENIPIILVGNKIDLEDQ-RQVST-EEAQQFAKENGL--LFFETSAKTGE------- 148 (159)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEEccccccc-ccccH-HHHHHHHHHcCC--eEEEEecCCCC-------
Confidence 9999888988886 888887764 56999999999999632 12222 334445555332 89999999999
Q ss_pred CCChhhHHHHHHHHH
Q 010254 174 PLQPSEIVGVKRVVQ 188 (514)
Q Consensus 174 ~l~~~~i~~L~~~i~ 188 (514)
|++++.+.|.
T Consensus 149 -----~i~~~~~~i~ 158 (159)
T cd00154 149 -----NVEELFQSLA 158 (159)
T ss_pred -----CHHHHHHHHh
Confidence 8998888764
No 164
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.87 E-value=2.6e-21 Score=172.43 Aligned_cols=157 Identities=15% Similarity=0.168 Sum_probs=112.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
..+||+++|++|||||||+++|.++.+... .++.+... ..+..+...+.+|||||.+.+...+..+++.+|++++|+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-~~t~~~~~--~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~ 90 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHT-SPTIGSNV--EEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI 90 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCc-CCccccce--EEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence 468999999999999999999998876432 22222111 233445789999999999988888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCcccccchhHhhhhHHHHHH-Hhcc-CcEEEcCccccccceec
Q 010254 95 ACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQ-FREI-ETCIECSALKQIQVKCF 171 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~-~~~i~~Sa~~~~~~~~f 171 (514)
|++++.++......|...+... ..++|+++++||+|+... ...++....+... .... .++++|||++|.
T Consensus 91 D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~---~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~----- 162 (174)
T cd04153 91 DSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA---MTPAEISESLGLTSIRDHTWHIQGCCALTGE----- 162 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEecccCCCC-----
Confidence 9999888877766454444432 146899999999998653 1111111111100 0000 158999999999
Q ss_pred CCCCChhhHHHHHHHHHH
Q 010254 172 NSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 172 ~~~l~~~~i~~L~~~i~~ 189 (514)
|++++.+.|.+
T Consensus 163 -------gi~e~~~~l~~ 173 (174)
T cd04153 163 -------GLPEGLDWIAS 173 (174)
T ss_pred -------CHHHHHHHHhc
Confidence 99999888753
No 165
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.87 E-value=2.9e-21 Score=171.99 Aligned_cols=137 Identities=21% Similarity=0.286 Sum_probs=111.5
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|.+|||||||+++|..+.|...+.|+.+..+. ..+...+......+|||+|+++|..++ ..+++++|++|+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~a~~~il 78 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLR--PLSYPQTDVFLV 78 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhh--hhhcccCCEEEE
Confidence 79999999999999999999999998888788776564 345555344456699999999998766 568899999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcC-Cccc
Q 010254 450 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLV-MVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~-~~~~ 513 (514)
|||+++++||+.+. .|+..+.... +++|++||+||+|+... .+..+++++++++++ +.||
T Consensus 79 v~d~~~~~s~~~~~~~w~~~i~~~~----~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~ 153 (175)
T cd01874 79 CFSVVSPSSFENVKEKWVPEITHHC----PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYV 153 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEE
Confidence 99999999999997 5888876643 26999999999998653 245677888998887 4564
No 166
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.87 E-value=4e-21 Score=170.66 Aligned_cols=141 Identities=21% Similarity=0.291 Sum_probs=117.8
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHh-hhcCccccccCcEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK-LLSNKDSLAACDIA 447 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~-~~~~~~~~~~~d~v 447 (514)
.+||+++|++|||||||+++|++..+...+.++.+.++....+.+.+....+.+|||+|++.+.. +. ..+++++|++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--~~~~~~~d~~ 79 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMV--QHYYRNVHAV 79 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhH--HHhhcCCCEE
Confidence 47999999999999999999999998877777777777777777774456677999999988863 44 5678999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++|||+++++||+.+..|+..+...... .++|+++|+||+|+...+ +...++.++++.++++|+
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (170)
T cd04115 80 VFVYDVTNMASFHSLPSWIEECEQHSLP--NEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLF 144 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcCC--CCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEE
Confidence 9999999999999999999888765432 269999999999997655 556778889998888775
No 167
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=3.9e-21 Score=170.67 Aligned_cols=159 Identities=23% Similarity=0.297 Sum_probs=117.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
.-++|+++|++|||||||+++|.++.+.....+..+... ....+....+.+.+|||||++.+......+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 458999999999999999999998775433322211111 122334445778999999998888888889999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceec
Q 010254 93 TYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCF 171 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f 171 (514)
|||++++.+++.+.. |+..++... .+.|+++|+||+|+... +....+ ....+.+... .++++|||++|.
T Consensus 86 v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~~i~v~NK~D~~~~-~~i~~~-~~~~~~~~~~--~~~~~~Sa~~~~----- 155 (169)
T cd04114 86 TYDITCEESFRCLPE-WLREIEQYANNKVITILVGNKIDLAER-REVSQQ-RAEEFSDAQD--MYYLETSAKESD----- 155 (169)
T ss_pred EEECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc-cccCHH-HHHHHHHHcC--CeEEEeeCCCCC-----
Confidence 999999989888875 888777654 36899999999998754 222211 2233333332 279999999999
Q ss_pred CCCCChhhHHHHHHHHHHH
Q 010254 172 NSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 172 ~~~l~~~~i~~L~~~i~~~ 190 (514)
|++++.+.|.+.
T Consensus 156 -------gv~~l~~~i~~~ 167 (169)
T cd04114 156 -------NVEKLFLDLACR 167 (169)
T ss_pred -------CHHHHHHHHHHH
Confidence 999999888764
No 168
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=3.6e-21 Score=173.90 Aligned_cols=139 Identities=21% Similarity=0.244 Sum_probs=117.6
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++....+.+|||+|.+.+...+ ...++++|++++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~--~~~~~~~d~iil 78 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLN--NSYYRGAHGYLL 78 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhH--HHHccCCCEEEE
Confidence 489999999999999999999999987777888877777777776444556799999999888766 678899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
|||+++++||+.+..|+..+..... .+.|+++|+||+|+...+ +...++.++++.++++|+
T Consensus 79 v~d~~~~~s~~~i~~~~~~i~~~~~---~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 140 (188)
T cd04125 79 VYDVTDQESFENLKFWINEINRYAR---ENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFF 140 (188)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999887642 258999999999998654 556778889988887765
No 169
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.87 E-value=2.5e-21 Score=171.05 Aligned_cols=139 Identities=19% Similarity=0.276 Sum_probs=113.9
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++++.+.+...+.++.+..+. ..+.+.+....+.+|||+|++.+..++ ..+++++|++++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~il 78 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMR--DLYMKNGQGFVL 78 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECCEEEEEEEEECCCcccchhHH--HHHHhhCCEEEE
Confidence 68999999999999999999999888777676665443 556666334455699999999998877 578899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
|||+++..||+.+..|+..+...... ++.|+++|+||+|+...+ ....++.+++++++++|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (164)
T cd04175 79 VYSITAQSTFNDLQDLREQILRVKDT--EDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFL 141 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEE
Confidence 99999999999999999888764322 379999999999997654 455667889988888775
No 170
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=5.2e-21 Score=169.15 Aligned_cols=139 Identities=18% Similarity=0.295 Sum_probs=116.7
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|..+.+...+.++.+.++.+..+..++....+.+|||+|++.+.... ...++.+|++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--~~~~~~~d~~ 79 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTIT--QSYYRSANGA 79 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHH--HHHhccCCEE
Confidence 35899999999999999999999999888887787777777778777333466799999999988766 5788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMV 511 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~ 511 (514)
++|||++++.||+.+..|+..+..... .++|+++|+||+|+...+ +...++.++++.+++.
T Consensus 80 llv~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 141 (165)
T cd01864 80 IIAYDITRRSSFESVPHWIEEVEKYGA---SNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGML 141 (165)
T ss_pred EEEEECcCHHHHHhHHHHHHHHHHhCC---CCCcEEEEEECcccccccccCHHHHHHHHHHcCCc
Confidence 999999999999999999999876432 279999999999997654 4567788899888763
No 171
>PLN03110 Rab GTPase; Provisional
Probab=99.87 E-value=3.7e-21 Score=177.21 Aligned_cols=141 Identities=17% Similarity=0.239 Sum_probs=121.7
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++....+.+|||+|++++..+. ..+++.++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~~~~ 88 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAIT--SAYYRGAVGA 88 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhCCCCEE
Confidence 56899999999999999999999999988887888888888888887445567799999999998876 5788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
|+|||++++.||+.+..|+..+..... .++|+++|+||+|+...+ +..+++..+++.++++|+
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~ 152 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHAD---SNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFL 152 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCC---CCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEE
Confidence 999999999999999999988876542 269999999999997655 556788889988888775
No 172
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.87 E-value=2e-21 Score=171.19 Aligned_cols=138 Identities=22% Similarity=0.339 Sum_probs=121.7
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 450 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv 450 (514)
||+++|+++||||||+++|.++.+...+.++.+.+.....+...+......+||++|++.+..+. ...++++|++|+|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~--~~~~~~~~~~ii~ 78 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLR--DIFYRNSDAIIIV 78 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHH--HHHHTTESEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence 79999999999999999999999998888888888888888887555566799999998887765 5678999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 451 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 451 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
||+++++||+.+..|+..+..... .+.|++|||||.|+...+ +..++++++|++++++|+
T Consensus 79 fd~~~~~S~~~~~~~~~~i~~~~~---~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~ 139 (162)
T PF00071_consen 79 FDVTDEESFENLKKWLEEIQKYKP---EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYF 139 (162)
T ss_dssp EETTBHHHHHTHHHHHHHHHHHST---TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEE
T ss_pred cccccccccccccccccccccccc---ccccceeeeccccccccccchhhHHHHHHHHhCCEEE
Confidence 999999999999999999988764 259999999999998744 778899999999998876
No 173
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.87 E-value=5.1e-21 Score=171.79 Aligned_cols=160 Identities=21% Similarity=0.260 Sum_probs=120.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-cccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEe
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYA 95 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~-tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 95 (514)
.||+|+|++|||||||+++|.+..+...+.++... .+....+....+.+.+|||||++++......++..+|++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 68999999999999999999998875544443322 12223333446778999999999888777888999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCCC
Q 010254 96 CDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNSP 174 (514)
Q Consensus 96 ~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~ 174 (514)
+++..+++.+...|...++... .+.|+++|+||+|+... +....+ ....+.+.++. +++++||+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~-------- 149 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQ-RQVSTE-EGKELAESWGA--AFLESSARENE-------- 149 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhc-CccCHH-HHHHHHHHcCC--eEEEEeCCCCC--------
Confidence 9999999988874444444332 46899999999998753 222222 23445555543 79999999999
Q ss_pred CChhhHHHHHHHHHHHhc
Q 010254 175 LQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 175 l~~~~i~~L~~~i~~~~~ 192 (514)
|+.+++..+.+.+.
T Consensus 150 ----gv~~l~~~l~~~~~ 163 (180)
T cd04137 150 ----NVEEAFELLIEEIE 163 (180)
T ss_pred ----CHHHHHHHHHHHHH
Confidence 99999988887654
No 174
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.86 E-value=4.7e-21 Score=168.75 Aligned_cols=139 Identities=18% Similarity=0.246 Sum_probs=114.0
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++......+|||+|++++..++ ..+++++|++++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~--~~~~~~~~~~i~ 78 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMR--DQYMRTGEGFLC 78 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHH--HHHHhcCCEEEE
Confidence 6899999999999999999999998887777666544 3555566334455689999999998877 578899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
|||++++.+|+.+..|+..+...... .+.|+++|+||+|+........+..++++.++++++
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 140 (162)
T cd04138 79 VFAINSRKSFEDIHTYREQIKRVKDS--DDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYI 140 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEECcccccceecHHHHHHHHHHhCCeEE
Confidence 99999999999999998888765422 269999999999998755667778888888887765
No 175
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.86 E-value=5.3e-21 Score=168.38 Aligned_cols=139 Identities=17% Similarity=0.292 Sum_probs=117.7
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|++.++...+.++.+.++....+.+++....+.+||++|++.+.... +..++.+|++++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~--~~~~~~~~~~i~ 78 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVT--RSYYRGAAGALL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhH--HHHhcCCCEEEE
Confidence 589999999999999999999999988887888877777777777444566799999999888766 577899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
|||++++.+|+.+..|+..+..... ++.|+++|+||+|+...+ +..+++..+++.+++.++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (161)
T cd04113 79 VYDITNRTSFEALPTWLSDARALAS---PNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFL 140 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEE
Confidence 9999999999999999988765542 379999999999997644 567788889998887765
No 176
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.86 E-value=3.7e-21 Score=169.72 Aligned_cols=139 Identities=16% Similarity=0.224 Sum_probs=113.2
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++++.+.+...+.++.+ .+....+.+++....+.+|||+|.++|..++ ..+++++|++++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~~i~ 78 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMR--DLYIKNGQGFIV 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchH--HHHHhhCCEEEE
Confidence 7899999999999999999999999887766654 4455667676344456699999999998776 567899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
|||+++++||+++..|+..+...... .++|+++|+||+|+..++ +...+...+++.++++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (163)
T cd04176 79 VYSLVNQQTFQDIKPMRDQIVRVKGY--EKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFM 141 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEE
Confidence 99999999999999998888765322 279999999999996544 455667888888877664
No 177
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.86 E-value=4.4e-22 Score=173.34 Aligned_cols=151 Identities=25% Similarity=0.463 Sum_probs=126.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCccccccee-CCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPP-VLPPTRLPEDFY-PDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~-~~~~tt~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
...+|++|||+.+||||+|+..+....|...+.+ ........+.++ ...+.+.+|||+|++++...+...+.++|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 3568999999999999999999999998877444 444555666774 77899999999999999886667899999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc-----------cchhHhhhhHHHHHHHhccCcEEEc
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIEC 160 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (514)
+||++.++.+++++...|++.++..+++.|+|+||+|.||.++. ..++ .+....++++++.. .++||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt-~~~g~~lA~~iga~-~y~Ec 159 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVT-YEQGLELAKEIGAV-KYLEC 159 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCccc-HHHHHHHHHHhCcc-eeeee
Confidence 99999999999999999999999999999999999999998542 0122 23346677787754 89999
Q ss_pred Cccccc
Q 010254 161 SALKQI 166 (514)
Q Consensus 161 Sa~~~~ 166 (514)
||++..
T Consensus 160 Sa~tq~ 165 (198)
T KOG0393|consen 160 SALTQK 165 (198)
T ss_pred hhhhhC
Confidence 999999
No 178
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.86 E-value=3.7e-21 Score=173.97 Aligned_cols=140 Identities=19% Similarity=0.241 Sum_probs=112.8
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 450 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv 450 (514)
||+++|.+|||||||+++|+.+.+...+.++.+..+. ..+.+.+....+.+|||+|+++|..+. ..+++++|++|+|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~~ilv 77 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTALR--DQWIREGEGFILV 77 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHHH--HHHHHhCCEEEEE
Confidence 5899999999999999999999998887777765543 445555334456799999999998776 5788999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 451 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 451 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
||+++..||+.+..|+..+.........+.|+++|+||+|+...+ +...++.++++.++++|+
T Consensus 78 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 141 (190)
T cd04144 78 YSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFI 141 (190)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEE
Confidence 999999999999999888765432112379999999999997544 556677889988888765
No 179
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.86 E-value=6.1e-21 Score=167.67 Aligned_cols=156 Identities=24% Similarity=0.380 Sum_probs=117.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeC
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYAC 96 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~ 96 (514)
||+|+|++|||||||+++|++..+.....+...... ....+....+.+.+||+||.+.+......+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 699999999999999999998876555444333111 1222233367899999999988888888899999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCCC
Q 010254 97 DRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNSP 174 (514)
Q Consensus 97 ~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~ 174 (514)
+++.++.++.. |...+.... ...|+++|+||+|+... +.... +....+...++ .+++++||+++.
T Consensus 81 ~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~-~~~~~~~~~~~--~~~~~~S~~~~~-------- 147 (160)
T cd00876 81 TDRESFEEIKG-YREQILRVKDDEDIPIVLVGNKCDLENE-RQVSK-EEGKALAKEWG--CPFIETSAKDNI-------- 147 (160)
T ss_pred CCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCccccc-ceecH-HHHHHHHHHcC--CcEEEeccCCCC--------
Confidence 99999888876 555544433 37999999999999864 22232 23444555554 289999999999
Q ss_pred CChhhHHHHHHHHHHH
Q 010254 175 LQPSEIVGVKRVVQEK 190 (514)
Q Consensus 175 l~~~~i~~L~~~i~~~ 190 (514)
|++++.+.|.+.
T Consensus 148 ----~i~~l~~~l~~~ 159 (160)
T cd00876 148 ----NIDEVFKLLVRE 159 (160)
T ss_pred ----CHHHHHHHHHhh
Confidence 999999888764
No 180
>PTZ00369 Ras-like protein; Provisional
Probab=99.86 E-value=5.9e-21 Score=172.51 Aligned_cols=141 Identities=19% Similarity=0.247 Sum_probs=115.8
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|+++.+...+.++.+..+ .+.+.++++...+.+|||+|++++..++ ..+++.+|++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~--~~~~~~~d~i 80 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMR--DQYMRTGQGF 80 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhH--HHHhhcCCEE
Confidence 348999999999999999999999999888877776555 3556666444456699999999998877 5788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++|||+++++||+.+..|+..+...... ++.|+++|+||+|+...+ +...++.++++.++++||
T Consensus 81 ilv~D~s~~~s~~~~~~~~~~i~~~~~~--~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~ 145 (189)
T PTZ00369 81 LCVYSITSRSSFEEIASFREQILRVKDK--DRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFL 145 (189)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEE
Confidence 9999999999999999999888765322 278999999999986544 456678888888888765
No 181
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.86 E-value=8.1e-21 Score=167.85 Aligned_cols=141 Identities=16% Similarity=0.245 Sum_probs=112.4
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++++++.+...+.++.+..+. ..+....+...+.+|||+|++++..+. ...++.+|++++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~il 78 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCSKNICTLQITDTTGSHQFPAMQ--RLSISKGHAFIL 78 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEE-EEEEECCEEEEEEEEECCCCCcchHHH--HHHhhcCCEEEE
Confidence 68999999999999999999999998777676665443 444444344566799999999988765 567889999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
|||+++++||+.+..|+..+........+++|+++|+||+|+...+ +...++..+++.+++.|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 143 (165)
T cd04140 79 VYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFM 143 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEE
Confidence 9999999999999999887766432222379999999999997643 556677888888887765
No 182
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.86 E-value=3.7e-21 Score=169.18 Aligned_cols=155 Identities=17% Similarity=0.206 Sum_probs=107.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCC
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACD 97 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~ 97 (514)
+|+|+|++|||||||+++|.++++....+ +.+ .+.........+.+.+|||||.+.+...+..+++.+|++++|+|++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~-t~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~ 78 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIP-TVG-FNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSS 78 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccC-ccC-cceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC
Confidence 58999999999999999999988643322 111 1111111134678999999999888888888899999999999999
Q ss_pred CcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCcccccchhHhhhhHHHH-HHHhc--cCcEEEcCccccccceecCC
Q 010254 98 RPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIM-QQFRE--IETCIECSALKQIQVKCFNS 173 (514)
Q Consensus 98 ~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~--~~~~i~~Sa~~~~~~~~f~~ 173 (514)
++.++......+...++.. ..+.|+++|+||+|+... ...++....+. ..+.. ..++++|||++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~------- 148 (160)
T cd04156 79 DEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA---LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGE------- 148 (160)
T ss_pred cHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC---cCHHHHHHHcCCcccCCCCcEEEEecccccCC-------
Confidence 9888888776333333322 147999999999998643 11111111110 11110 1158999999999
Q ss_pred CCChhhHHHHHHHHHH
Q 010254 174 PLQPSEIVGVKRVVQE 189 (514)
Q Consensus 174 ~l~~~~i~~L~~~i~~ 189 (514)
|++++++.|.+
T Consensus 149 -----gv~~~~~~i~~ 159 (160)
T cd04156 149 -----GLAEAFRKLAS 159 (160)
T ss_pred -----ChHHHHHHHhc
Confidence 99998887753
No 183
>PLN03108 Rab family protein; Provisional
Probab=99.86 E-value=1e-20 Score=173.53 Aligned_cols=141 Identities=13% Similarity=0.219 Sum_probs=120.2
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|++.++...+.++.+.++....+.+.+....+.+|||+|.+.+..+. ...++.+|++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~--~~~~~~ad~~ 82 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSIT--RSYYRGAAGA 82 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHH--HHHhccCCEE
Confidence 45899999999999999999999999988888888888877777777444456699999999888766 5788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++|||+++..||+.+..|+..+..... ++.|+++|+||+|+...+ ....++++++++++++|+
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~---~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 146 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHAN---ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFM 146 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEE
Confidence 999999999999999999888765532 269999999999997755 567789999999988775
No 184
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=5.7e-21 Score=184.54 Aligned_cols=160 Identities=19% Similarity=0.224 Sum_probs=128.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc---cccceeCCeeEEEEEeCCCCccchh-----------hH
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR---LPEDFYPDRVPITIIDTPSSVEDRG-----------KL 80 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt---~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~~ 80 (514)
..+||+|+|+||||||||+|+|++++ ..+++..++|| +...+..++.++.++||+|+..-.. ..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgee--R~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEE--RVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCc--eEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 57999999999999999999999999 88999999999 5556667789999999999864321 23
Q ss_pred HHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc--cCcEE
Q 010254 81 GEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--IETCI 158 (514)
Q Consensus 81 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~i 158 (514)
..++..||++++|+|++.+.+-++.. +...+.+. +++++||+||+|+.+. +....++....+...+.. ..+++
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~--ia~~i~~~--g~~~vIvvNKWDl~~~-~~~~~~~~k~~i~~~l~~l~~a~i~ 329 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLR--IAGLIEEA--GRGIVIVVNKWDLVEE-DEATMEEFKKKLRRKLPFLDFAPIV 329 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHH--HHHHHHHc--CCCeEEEEEccccCCc-hhhHHHHHHHHHHHHhccccCCeEE
Confidence 56799999999999999887766554 88888887 8999999999999875 334444444455555543 34899
Q ss_pred EcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 159 ECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 159 ~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
.+||+++. ++..|.+.+.+....
T Consensus 330 ~iSA~~~~------------~i~~l~~~i~~~~~~ 352 (444)
T COG1160 330 FISALTGQ------------GLDKLFEAIKEIYEC 352 (444)
T ss_pred EEEecCCC------------ChHHHHHHHHHHHHH
Confidence 99999999 899998888775543
No 185
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.86 E-value=9.8e-21 Score=168.45 Aligned_cols=137 Identities=20% Similarity=0.252 Sum_probs=111.2
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+.+++.+.+...+.++....+. ..+..++....+.+|||+|++.+..++ ..+++++|++|+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~il 78 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLR--PLSYPQTDVFLI 78 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE-EEEEECCEEEEEEEEECCCchhhhhhh--hhhcCCCCEEEE
Confidence 68999999999999999999999998888777654443 344555344566799999999998776 568899999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC-ccc
Q 010254 450 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-VLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~-~~~ 513 (514)
|||+++++||+.+. .|+..+.... ++.|++||+||+|+... .+..+++.+++++++. +|+
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~~----~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 153 (174)
T cd01871 79 CFSLVSPASFENVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 153 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEE
Confidence 99999999999996 6887776543 37999999999999642 2557788899999984 665
No 186
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.86 E-value=1.1e-20 Score=169.92 Aligned_cols=159 Identities=16% Similarity=0.200 Sum_probs=113.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
.+.++|+++|.+|||||||+|+|.+..+.. +.++...+. ..+..+++++.+|||||.+.+...+..++..+|++++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v 91 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYL 91 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 456999999999999999999999987533 222222111 22334578999999999988888888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCcccccchhHhhhhHHH--HHHH-------hccCcEEEcCcc
Q 010254 94 YACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPI--MQQF-------REIETCIECSAL 163 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~--~~~~-------~~~~~~i~~Sa~ 163 (514)
+|++++.++......+...+... ..++|+++|+||+|+... .+.++..+.+ .+.. .....+++|||+
T Consensus 92 vD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~---~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~ 168 (184)
T smart00178 92 VDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA---ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVV 168 (184)
T ss_pred EECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC---CCHHHHHHHcCCCcccccccccCCceeEEEEeecc
Confidence 99999888877765333333321 247899999999998643 2222211111 0000 012258999999
Q ss_pred ccccceecCCCCChhhHHHHHHHHHHH
Q 010254 164 KQIQVKCFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 164 ~~~~~~~f~~~l~~~~i~~L~~~i~~~ 190 (514)
++. |++++.++|.++
T Consensus 169 ~~~------------g~~~~~~wl~~~ 183 (184)
T smart00178 169 RRM------------GYGEGFKWLSQY 183 (184)
T ss_pred cCC------------ChHHHHHHHHhh
Confidence 999 999999998764
No 187
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.9e-22 Score=162.76 Aligned_cols=169 Identities=17% Similarity=0.273 Sum_probs=132.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--ccccee---------CCeeEEEEEeCCCCccchhhHHHhhh
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFY---------PDRVPITIIDTPSSVEDRGKLGEELR 85 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~~~~~ 85 (514)
+|.+.+|++||||||++.+.+..+|.....++.+.-- ..+.|. ...+.+.+|||+|++++++...++++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 5778899999999999999999988555322222111 111121 12467889999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcc
Q 010254 86 RADAVVLTYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (514)
Q Consensus 86 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 163 (514)
.|-++++++|+++..+|-++.. |+..++.. +.+.-||+++||+||.+. |.++.+ ...+++.+++- |+||+||-
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrn-WlSQL~~hAYcE~PDivlcGNK~DL~~~-R~Vs~~-qa~~La~kygl--PYfETSA~ 164 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRN-WLSQLQTHAYCENPDIVLCGNKADLEDQ-RVVSED-QAAALADKYGL--PYFETSAC 164 (219)
T ss_pred hhccceEEEeccchHHHHHHHH-HHHHHHHhhccCCCCEEEEcCccchhhh-hhhhHH-HHHHHHHHhCC--Ceeeeccc
Confidence 9999999999999999999997 99998764 567789999999999887 655554 55789999986 99999999
Q ss_pred ccccceecCCCCChhhHHHHHHHHHHHhcCcccCC
Q 010254 164 KQIQVKCFNSPLQPSEIVGVKRVVQEKLREGVNER 198 (514)
Q Consensus 164 ~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~~~~ 198 (514)
+|.|++- .++-|.+.+.+.++.....+
T Consensus 165 tg~Nv~k--------ave~LldlvM~Rie~~v~~s 191 (219)
T KOG0081|consen 165 TGTNVEK--------AVELLLDLVMKRIEQCVEKS 191 (219)
T ss_pred cCcCHHH--------HHHHHHHHHHHHHHHHHhhc
Confidence 9997743 67777888877776554333
No 188
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.86 E-value=4.6e-21 Score=169.83 Aligned_cols=155 Identities=16% Similarity=0.186 Sum_probs=107.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~-~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
+|+|+|++|||||||+|+|.+.... .........+|+. ..+..++..+.+|||||++.+......+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 5899999999999999999875421 1111111122211 12344578999999999998888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHH----hc-cCcEEEcCccccc
Q 010254 94 YACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF----RE-IETCIECSALKQI 166 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~----~~-~~~~i~~Sa~~~~ 166 (514)
+|++++.++..... |+..+.+. ..+.|+++|+||+|+... ...++ ...+.... +. ..+++++||++|.
T Consensus 81 vd~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~D~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 155 (167)
T cd04160 81 IDSTDRERFEESKS-ALEKVLRNEALEGVPLLILANKQDLPDA---LSVEE-IKEVFQDKAEEIGRRDCLVLPVSALEGT 155 (167)
T ss_pred EECchHHHHHHHHH-HHHHHHhChhhcCCCEEEEEEccccccC---CCHHH-HHHHhccccccccCCceEEEEeeCCCCc
Confidence 99998888877765 44443332 247999999999998654 11121 12222211 11 1279999999999
Q ss_pred cceecCCCCChhhHHHHHHHHHH
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~ 189 (514)
|++++.++|.+
T Consensus 156 ------------gv~e~~~~l~~ 166 (167)
T cd04160 156 ------------GVREGIEWLVE 166 (167)
T ss_pred ------------CHHHHHHHHhc
Confidence 99999888754
No 189
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.86 E-value=1.7e-20 Score=169.46 Aligned_cols=146 Identities=18% Similarity=0.207 Sum_probs=112.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--ccccee-----CCeeEEEEEeCCCCccchhhHHHhhhccCE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFY-----PDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ 89 (514)
+||+++|+++||||||+++++++.|...+.++.+... ....+. ...+.+.||||+|.+++......+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 5899999999999999999999988666554443211 112221 346789999999999999888999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhc--------------------CCCCcEEEEEecccCcccccchhHhh---hhHH
Q 010254 90 VVLTYACDRPETLDELSTFWLPELRRL--------------------EVKVPVIVVGCKLDLRDENQQVSLEQ---VMMP 146 (514)
Q Consensus 90 ii~v~d~~~~~s~~~~~~~~~~~l~~~--------------------~~~~pvilv~NK~Dl~~~~~~~~~~~---~~~~ 146 (514)
+|+|||++++.+++++.. |+..+... ..+.|++||+||+|+.+. |..+.+. ....
T Consensus 81 iIlVyDvtn~~Sf~~l~~-W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~-r~~~~~~~~~~~~~ 158 (202)
T cd04102 81 IILVHDLTNRKSSQNLQR-WSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE-KESSGNLVLTARGF 158 (202)
T ss_pred EEEEEECcChHHHHHHHH-HHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh-cccchHHHhhHhhh
Confidence 999999999999999985 99888652 136899999999999765 3333332 2235
Q ss_pred HHHHHhccCcEEEcCccccc
Q 010254 147 IMQQFREIETCIECSALKQI 166 (514)
Q Consensus 147 ~~~~~~~~~~~i~~Sa~~~~ 166 (514)
++++++. +.++.++....
T Consensus 159 ia~~~~~--~~i~~~c~~~~ 176 (202)
T cd04102 159 VAEQGNA--EEINLNCTNGR 176 (202)
T ss_pred HHHhcCC--ceEEEecCCcc
Confidence 6666654 77888888775
No 190
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.86 E-value=1.1e-20 Score=171.18 Aligned_cols=139 Identities=18% Similarity=0.309 Sum_probs=114.5
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCC-CCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSD-NYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
+||+++|++|||||||+++|.+.++.. .+.++.+.++....+.+.+....+.+|||+|++.+.... ...++.+|++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~ad~~i 78 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVT--HAYYRDAHALL 78 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhh--HHHccCCCEEE
Confidence 489999999999999999999998864 455666666666667776444566799999999988766 56789999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+|||+++++||+.+..|+..+...... ++|+++|+||+|+..++ +...++..+++.++++|+
T Consensus 79 ~v~D~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~ 141 (191)
T cd04112 79 LLYDITNKASFDNIRAWLTEIKEYAQE---DVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFM 141 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCC---CCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEE
Confidence 999999999999999999888776422 68999999999997544 556778889998888765
No 191
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.86 E-value=1.7e-22 Score=159.11 Aligned_cols=135 Identities=16% Similarity=0.269 Sum_probs=121.2
Q ss_pred EeCCCCCChHHHHHHhhCCCCCCC-CCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEEEe
Q 010254 374 VFGPKKAGKSVLLNSFLGRPFSDN-YTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHD 452 (514)
Q Consensus 374 iiG~~~vGKSsLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D 452 (514)
++|++++|||+|+-||..+.|... ..++.+.+|..+.++.++.+.+..+|||+|+|+|+++. ..+|+.+|+.+++||
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt--~ayyrda~allllyd 79 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVT--HAYYRDADALLLLYD 79 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhh--Hhhhcccceeeeeee
Confidence 689999999999999988776543 34688999999999999788888899999999999987 689999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 453 SSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 453 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+.++.||+++..|+.+|..+..+ .+.++++|||+|+..++ +...+++.+++.+++||+
T Consensus 80 iankasfdn~~~wlsei~ey~k~---~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfm 138 (192)
T KOG0083|consen 80 IANKASFDNCQAWLSEIHEYAKE---AVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFM 138 (192)
T ss_pred cccchhHHHHHHHHHHHHHHHHh---hHhHhhhccccccchhhccccchHHHHHHHHCCCce
Confidence 99999999999999999888643 68899999999998877 778999999999999986
No 192
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.85 E-value=8.3e-21 Score=167.73 Aligned_cols=137 Identities=14% Similarity=0.203 Sum_probs=111.1
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++++.+.+...+.++.+.++....+...++.....+|||+|++.+..+. ...++.+|++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~i~ 78 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR--DGYYIGGQCAII 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcccc--HHHhcCCCEEEE
Confidence 489999999999999999999988877777777766665555555455677799999998887655 467889999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
|||+++++||+.+..|+..+..... +.|+++|+||+|+...... .+..++++..+++||
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~----~~piiiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~ 137 (166)
T cd00877 79 MFDVTSRVTYKNVPNWHRDLVRVCG----NIPIVLCGNKVDIKDRKVK-AKQITFHRKKNLQYY 137 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC----CCcEEEEEEchhcccccCC-HHHHHHHHHcCCEEE
Confidence 9999999999999999999887652 6999999999999753332 345567777776665
No 193
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.85 E-value=6.7e-21 Score=172.66 Aligned_cols=144 Identities=17% Similarity=0.181 Sum_probs=107.5
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhh------cCcccccc
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLL------SNKDSLAA 443 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~------~~~~~~~~ 443 (514)
+||+++|++|||||||+++|+++++...+.|+.+.+.....+..++....+.+|||+|.+.+.... .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 489999999999999999999999988887777666555556666333456699998854332110 01345789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHH-HcCCccc
Q 010254 444 CDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFT-FLVMVLY 513 (514)
Q Consensus 444 ~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~-~~~~~~~ 513 (514)
+|++|+|||+++++||+.+..|+..+.........++|+++|+||+|+...+ +..++.+++++ .++++||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 152 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYL 152 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEE
Confidence 9999999999999999999999888776532111379999999999997654 45556666654 5678775
No 194
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.85 E-value=1.4e-20 Score=165.58 Aligned_cols=139 Identities=16% Similarity=0.260 Sum_probs=116.6
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|++.++...+.++.+.++....+..++....+.+|||+|++.+..+. ...++.+|++++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~--~~~~~~~~~ii~ 78 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLI--PSYIRDSSVAVV 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhccCCEEEE
Confidence 379999999999999999999999988887888888888888777444567799999999888766 578899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
|||++++.||+.+..|+..+..... .+.|+++|+||+|+...+ ....+...+++..+++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (161)
T cd01861 79 VYDITNRQSFDNTDKWIDDVRDERG---NDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFI 140 (161)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEE
Confidence 9999999999999999998876542 159999999999995444 566778888888777654
No 195
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.85 E-value=1.2e-20 Score=165.98 Aligned_cols=136 Identities=21% Similarity=0.264 Sum_probs=109.8
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|.+|||||||+++|+++++...+.++.+.......+.+.+......+|||+|++.|..++ ..+++++|++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~i~ 78 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMH--ASYYHKAHACIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhh--HHHhCCCCEEEE
Confidence 489999999999999999999999887776665555555555666344556699999999998877 678999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
|||++++.+|+.+..|+..+.... ++.|+++|+||+|+... ...+..++++.+++++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~----~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~ 136 (161)
T cd04124 79 VFDVTRKITYKNLSKWYEELREYR----PEIPCIVVANKIDLDPS--VTQKKFNFAEKHNLPLY 136 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC----CCCcEEEEEECccCchh--HHHHHHHHHHHcCCeEE
Confidence 999999999999999999887653 26999999999998542 23445667777777665
No 196
>PRK15494 era GTPase Era; Provisional
Probab=99.85 E-value=1.1e-20 Score=184.90 Aligned_cols=159 Identities=20% Similarity=0.256 Sum_probs=113.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccchhh--------HHHh
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRGK--------LGEE 83 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~ 83 (514)
..++|+|+|+||||||||+|+|++.++. .++..++||.. ..+..++.++.+|||||+.+.... ...+
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~--ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLS--IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCcee--eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 4569999999999999999999998853 33334455532 234556778999999998542211 1235
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcc
Q 010254 84 LRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (514)
Q Consensus 84 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 163 (514)
+..+|++++|+|..+ ++......|+..++.. +.|+++|+||+|+.+. . .. ..............++++||+
T Consensus 129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~-~---~~-~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 129 LHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK-Y---LN-DIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred hhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-c---HH-HHHHHHHhcCCCcEEEEEecc
Confidence 789999999999654 4555555577777765 6788999999998643 1 12 122233332222378999999
Q ss_pred ccccceecCCCCChhhHHHHHHHHHHHhcCccc
Q 010254 164 KQIQVKCFNSPLQPSEIVGVKRVVQEKLREGVN 196 (514)
Q Consensus 164 ~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~~ 196 (514)
+|. |+++|++.|.+.+++++.
T Consensus 200 tg~------------gv~eL~~~L~~~l~~~~~ 220 (339)
T PRK15494 200 SGK------------NIDGLLEYITSKAKISPW 220 (339)
T ss_pred Ccc------------CHHHHHHHHHHhCCCCCC
Confidence 999 999999999999987653
No 197
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.85 E-value=1.2e-20 Score=166.50 Aligned_cols=158 Identities=19% Similarity=0.081 Sum_probs=101.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccc---eeCC-eeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPED---FYPD-RVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~---~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
+.|+|+|++|||||||+|+|++.+.........+++|+... +... +..+.+|||||++++......+++.+|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 36999999999999999999975421111111233443221 2222 6789999999998887666778899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHh-ccCcEEEcCccccccceec
Q 010254 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR-EIETCIECSALKQIQVKCF 171 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~Sa~~~~~~~~f 171 (514)
|+|+++....+... .+..+... ..+|+++|+||+|+..........+...+..+..+ ...+++++||+++.
T Consensus 81 V~d~~~~~~~~~~~--~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~----- 152 (164)
T cd04171 81 VVAADEGIMPQTRE--HLEILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE----- 152 (164)
T ss_pred EEECCCCccHhHHH--HHHHHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc-----
Confidence 99998632222221 22333333 13499999999999764111111112222222210 12389999999999
Q ss_pred CCCCChhhHHHHHHHHHH
Q 010254 172 NSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 172 ~~~l~~~~i~~L~~~i~~ 189 (514)
|++++++.+.+
T Consensus 153 -------~v~~l~~~l~~ 163 (164)
T cd04171 153 -------GIEELKEYLDE 163 (164)
T ss_pred -------CHHHHHHHHhh
Confidence 99998887753
No 198
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.85 E-value=2.8e-20 Score=168.79 Aligned_cols=169 Identities=18% Similarity=0.191 Sum_probs=118.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCCCCCCC--C---------CCCCcc---cccceeCCeeEEEEEeCCCCccchhhHH
Q 010254 18 RIVVCGEKGTGKSSLIVTAAA--DTFPANVP--P---------VLPPTR---LPEDFYPDRVPITIIDTPSSVEDRGKLG 81 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~--~~~~~~~~--~---------~~~~tt---~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 81 (514)
+|+|+|++|||||||+++|++ ..+..... . ...+++ ....+..++..+.+|||||++++.....
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 799999999999999999997 34322210 0 011222 1123445678999999999999988889
Q ss_pred HhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHh----c-cCc
Q 010254 82 EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR----E-IET 156 (514)
Q Consensus 82 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----~-~~~ 156 (514)
.+++.+|++++|+|+++... .... .++..+... ++|+++|+||+|+... +.....+....+...++ . -.+
T Consensus 84 ~~~~~~d~~ilV~d~~~~~~-~~~~-~~~~~~~~~--~~p~iiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 84 RVLSMVDGVLLLVDASEGPM-PQTR-FVLKKALEL--GLKPIVVINKIDRPDA-RPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHhcCEEEEEEECCCCcc-HHHH-HHHHHHHHc--CCCEEEEEECCCCCCC-CHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999987432 2222 245555444 7899999999999754 22222223333333321 1 127
Q ss_pred EEEcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 157 CIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 157 ~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
++++||++|.++.-+.+. ..++++|.+.|.+++|.
T Consensus 159 iv~~Sa~~g~~~~~~~~~--~~~~~~l~~~~~~~~~~ 193 (194)
T cd01891 159 VLYASAKNGWASLNLEDP--SEDLEPLFDTIIEHVPA 193 (194)
T ss_pred EEEeehhccccccccccc--hhhHHHHHHHHHhcCCC
Confidence 899999999988777766 34999999999988875
No 199
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.85 E-value=1.7e-20 Score=169.98 Aligned_cols=157 Identities=21% Similarity=0.289 Sum_probs=113.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
++.+||+|+|++|||||||+++|.+..+.. +.++...+. ..+..++.++.+|||||.+.+...+..+++.+|++++|
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-~~~T~~~~~--~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV 93 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLHPTS--EELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFL 93 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccCcce--EEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 457999999999999999999999887632 222222221 23444578899999999988877778889999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHH--------------hccCcE
Q 010254 94 YACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF--------------REIETC 157 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 157 (514)
+|+++..++..... |+..+.+. ..+.|+++|+||+|+... ...+ .+..+.... ....++
T Consensus 94 ~D~~~~~s~~~~~~-~~~~i~~~~~~~~~pvivv~NK~Dl~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T cd00879 94 VDAADPERFQESKE-ELDSLLSDEELANVPFLILGNKIDLPGA---VSEE-ELRQALGLYGTTTGKGVSLKVSGIRPIEV 168 (190)
T ss_pred EECCcHHHHHHHHH-HHHHHHcCccccCCCEEEEEeCCCCCCC---cCHH-HHHHHhCcccccccccccccccCceeEEE
Confidence 99999888877765 44444332 146999999999998643 2222 222222111 011258
Q ss_pred EEcCccccccceecCCCCChhhHHHHHHHHHHH
Q 010254 158 IECSALKQIQVKCFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 158 i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~ 190 (514)
++|||++|. |++++.+++.+.
T Consensus 169 ~~~Sa~~~~------------gv~e~~~~l~~~ 189 (190)
T cd00879 169 FMCSVVKRQ------------GYGEAFRWLSQY 189 (190)
T ss_pred EEeEecCCC------------ChHHHHHHHHhh
Confidence 999999999 999999888764
No 200
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.85 E-value=1.9e-20 Score=164.87 Aligned_cols=140 Identities=16% Similarity=0.258 Sum_probs=118.1
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|.+..+...+.++.+.++.+..+...+......+||++|++.+..+. ...++.+|++++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~d~~i~ 78 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLT--SSYYRGAQGVIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhh--HHHhCCCCEEEE
Confidence 589999999999999999999999877777888887777777666444567799999998887665 567899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
|||++++.+|+.+..|+..+...... ++.|+++|+||+|+........+..+++++.+++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 140 (161)
T cd01863 79 VYDVTRRDTFTNLETWLNELETYSTN--NDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFI 140 (161)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhCCC--CCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEE
Confidence 99999999999999999888776433 279999999999998655667788889998888775
No 201
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.85 E-value=1.9e-20 Score=167.91 Aligned_cols=156 Identities=17% Similarity=0.194 Sum_probs=110.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCCCC-----CCcc-----cccce---eCCeeEEEEEeCCCCccch
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADT-------FPANVPPVL-----PPTR-----LPEDF---YPDRVPITIIDTPSSVEDR 77 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~-------~~~~~~~~~-----~~tt-----~~~~~---~~~~~~~~l~Dt~G~~~~~ 77 (514)
+|+++|++|||||||+++|++.. +...+.+.. .+++ ....+ ....+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 69999999999999999999743 111111111 1122 11122 3457889999999999998
Q ss_pred hhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhcc-Cc
Q 010254 78 GKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI-ET 156 (514)
Q Consensus 78 ~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~ 156 (514)
..+..+++.+|++|+|+|++++.+.+.... |.... .. ++|+++|+||+|+.+. +. .+....+.+.++.. ..
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~-~~~~~-~~--~~~iiiv~NK~Dl~~~-~~---~~~~~~~~~~~~~~~~~ 153 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLAN-FYLAL-EN--NLEIIPVINKIDLPSA-DP---ERVKQQIEDVLGLDPSE 153 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHH-HHHHH-Hc--CCCEEEEEECCCCCcC-CH---HHHHHHHHHHhCCCccc
Confidence 888889999999999999998776666543 44333 22 7899999999998653 11 12223445544421 24
Q ss_pred EEEcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 157 CIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 157 ~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
++++||++|. |+++|.+.+.+.++.
T Consensus 154 ~~~~Sa~~g~------------gi~~l~~~l~~~~~~ 178 (179)
T cd01890 154 AILVSAKTGL------------GVEDLLEAIVERIPP 178 (179)
T ss_pred EEEeeccCCC------------CHHHHHHHHHhhCCC
Confidence 8999999999 999999999887753
No 202
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.85 E-value=7.7e-21 Score=168.13 Aligned_cols=162 Identities=19% Similarity=0.274 Sum_probs=112.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCC
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACD 97 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~ 97 (514)
+|+++|++|||||||+++|.++ +...+.++.+.+. ..+..+++.+.+|||||.+.+...+..+++++|++++|||++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s 77 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSS 77 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECC
Confidence 4899999999999999999987 4334444333322 234456789999999999888888889999999999999999
Q ss_pred CcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhh--hHHHHHHHhccCcEEEcCccccccceecCC
Q 010254 98 RPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQV--MMPIMQQFREIETCIECSALKQIQVKCFNS 173 (514)
Q Consensus 98 ~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~ 173 (514)
++.+++.+.. |+..+.+.. .++|+++|+||+|+..........+. ...++++.+....+++|||++|.+-..
T Consensus 78 ~~~s~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~--- 153 (167)
T cd04161 78 DDDRVQEVKE-ILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI--- 153 (167)
T ss_pred chhHHHHHHH-HHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc---
Confidence 9888888876 666665432 47899999999999765211111111 122221111112678899999820000
Q ss_pred CCChhhHHHHHHHHHH
Q 010254 174 PLQPSEIVGVKRVVQE 189 (514)
Q Consensus 174 ~l~~~~i~~L~~~i~~ 189 (514)
.+|+++-+++|..
T Consensus 154 ---~~g~~~~~~wl~~ 166 (167)
T cd04161 154 ---DPSIVEGLRWLLA 166 (167)
T ss_pred ---ccCHHHHHHHHhc
Confidence 0188888888753
No 203
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.85 E-value=1.8e-20 Score=169.23 Aligned_cols=137 Identities=20% Similarity=0.258 Sum_probs=110.4
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECC-CCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP-GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
+||+++|++|||||||+++|+++.+...+.++.+.++.. .+... +....+.+|||+|++++..+. +..++++|+++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~ii 77 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLR--PLSYPDVDVLL 77 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHH--HHhCCCCCEEE
Confidence 489999999999999999999999987777776665543 34444 344466799999999988776 56789999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-----cchhhHHHHHHHcCC-ccc
Q 010254 449 FVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-----MAIQDSTRVFTFLVM-VLY 513 (514)
Q Consensus 449 lv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~-~~~ 513 (514)
+|||++++.||+.+. .|+..+.... ++.|+++|+||+|+.... +...+++++++.+++ +||
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 145 (187)
T cd04132 78 ICYAVDNPTSLDNVEDKWFPEVNHFC----PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYL 145 (187)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEE
Confidence 999999999999996 5887776543 279999999999996532 456788899999887 554
No 204
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.85 E-value=1.8e-20 Score=165.55 Aligned_cols=139 Identities=19% Similarity=0.303 Sum_probs=112.7
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|++..+...+.++.+..+ ...+..++....+.+|||+|++++..+. ...++.+|++++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~--~~~~~~~~~~i~ 77 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAMR--DQYMRTGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHHH--HHHHhhCCEEEE
Confidence 4899999999999999999999998887766665444 3555555344566699999999988776 567899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
|||++++++|+.+..|+..+...... .+.|+++|+||+|+...+ ....++.++++.++++|+
T Consensus 78 v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T smart00173 78 VYSITDRQSFEEIKKFREQILRVKDR--DDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFL 140 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEE
Confidence 99999999999999998887665332 268999999999997654 456778889988888765
No 205
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.8e-22 Score=162.07 Aligned_cols=143 Identities=12% Similarity=0.177 Sum_probs=122.4
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCC--------CcE-EEEEEecCChhHHHhhhcCc
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPG--------GTK-KTVVLREIPEEAVAKLLSNK 438 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~i~dt~g~~~~~~~~~~~ 438 (514)
+.+|.+.+|++||||||++.++..+.|......+.+.+|..+.+-++. +.. ...+|||+|+|+|+++. -
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT--T 85 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT--T 85 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH--H
Confidence 457899999999999999999999999988888888888877665431 122 34599999999999988 5
Q ss_pred cccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCcccC
Q 010254 439 DSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLYK 514 (514)
Q Consensus 439 ~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 514 (514)
..++.|-+++++||.++..||-+++.|+.++....-. ++.-+|++|||+||.+.+ ++..++.++|+++++|||.
T Consensus 86 AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYc--E~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfE 160 (219)
T KOG0081|consen 86 AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYC--ENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFE 160 (219)
T ss_pred HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhcc--CCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeee
Confidence 7889999999999999999999999999997765432 367799999999999887 7788999999999999983
No 206
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.85 E-value=2.7e-20 Score=165.45 Aligned_cols=153 Identities=21% Similarity=0.237 Sum_probs=106.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCee-EEEEEeCCCCccch----hhHHH---hhhc
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRV-PITIIDTPSSVEDR----GKLGE---ELRR 86 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~-~~~l~Dt~G~~~~~----~~~~~---~~~~ 86 (514)
+|+|+|++|||||||+|+|.+.+. .+...+++|.. ..+...+. .+.+|||||+.+.. ..... .+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~---~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP---KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc---cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence 689999999999999999998663 22223333422 12233344 89999999974221 22223 3456
Q ss_pred cCEEEEEEeCCCc-ccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCc
Q 010254 87 ADAVVLTYACDRP-ETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSA 162 (514)
Q Consensus 87 ad~ii~v~d~~~~-~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 162 (514)
+|++++|+|++++ .+++.+.. |.+.+.... .++|+++|+||+|+.+.. ...+....+..... ..+++++||
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~---~~~~~~~~~~~~~~-~~~~~~~Sa 153 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKT-IRNELELYNPELLEKPRIVVLNKIDLLDEE---ELFELLKELLKELW-GKPVFPISA 153 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHH-HHHHHHHhCccccccccEEEEEchhcCCch---hhHHHHHHHHhhCC-CCCEEEEec
Confidence 9999999999998 67887764 888777653 368999999999997651 11222233333321 227899999
Q ss_pred cccccceecCCCCChhhHHHHHHHHHHH
Q 010254 163 LKQIQVKCFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 163 ~~~~~~~~f~~~l~~~~i~~L~~~i~~~ 190 (514)
+++. |++++.+.+.+.
T Consensus 154 ~~~~------------gi~~l~~~i~~~ 169 (170)
T cd01898 154 LTGE------------GLDELLRKLAEL 169 (170)
T ss_pred CCCC------------CHHHHHHHHHhh
Confidence 9999 999999888754
No 207
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.85 E-value=1.7e-20 Score=164.62 Aligned_cols=154 Identities=15% Similarity=0.151 Sum_probs=109.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCC
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACD 97 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~ 97 (514)
||+++|.+|||||||++++++.++.. ..++.+.+.. .+......+.+|||||.+.+......+++.+|++++|+|++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~-~~~t~~~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~ 77 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSS 77 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCcCcceE--EEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECC
Confidence 68999999999999999999987422 2222221111 22334688999999999988888888999999999999999
Q ss_pred CcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCcccccchhHhhhhHHHHHH--HhccCcEEEcCccccccceecCCC
Q 010254 98 RPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQ--FREIETCIECSALKQIQVKCFNSP 174 (514)
Q Consensus 98 ~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~Sa~~~~~~~~f~~~ 174 (514)
++.++......+...+... ..+.|+++|+||+|+.... ..++....+... .....+++++||++|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-------- 146 (158)
T cd00878 78 DRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL---SVSELIEKLGLEKILGRRWHIQPCSAVTGD-------- 146 (158)
T ss_pred CHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc---CHHHHHHhhChhhccCCcEEEEEeeCCCCC--------
Confidence 9988888776333333322 2479999999999997651 111111111111 0111279999999999
Q ss_pred CChhhHHHHHHHHHH
Q 010254 175 LQPSEIVGVKRVVQE 189 (514)
Q Consensus 175 l~~~~i~~L~~~i~~ 189 (514)
|++++.+.|..
T Consensus 147 ----gv~~~~~~l~~ 157 (158)
T cd00878 147 ----GLDEGLDWLLQ 157 (158)
T ss_pred ----CHHHHHHHHhh
Confidence 88888887754
No 208
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.85 E-value=2.2e-20 Score=164.90 Aligned_cols=140 Identities=18% Similarity=0.302 Sum_probs=112.6
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.+||+++|++|||||||++++++..+...+.++.+..+ .....+.+......+|||+|++++..+. ..+++.+|+++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~i 78 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMR--EQYMRTGEGFL 78 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHH--HHHHhhCCEEE
Confidence 37999999999999999999999988766666655433 3445555334566699999999998776 57889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+|||++++.+|+.+..|+..+...... .+.|+++|+||+|+...+ ...+++.++++.++++++
T Consensus 79 lv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04145 79 LVFSVTDRGSFEEVDKFHTQILRVKDR--DEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYI 142 (164)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC--CCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEE
Confidence 999999999999999999887764322 268999999999997654 456678889988888765
No 209
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.85 E-value=3.5e-20 Score=164.34 Aligned_cols=152 Identities=22% Similarity=0.213 Sum_probs=103.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeCCeeEEEEEeCCCCccchh--------h-HHHhhh
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYPDRVPITIIDTPSSVEDRG--------K-LGEELR 85 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~~~~~~~l~Dt~G~~~~~~--------~-~~~~~~ 85 (514)
+|+++|++|||||||+|+|.+.++.. ...+.+|... .+..++.++.+|||||+..... . ......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEV---APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCcc---CCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 79999999999999999999987532 1223444332 2334568999999999842110 1 111123
Q ss_pred ccCEEEEEEeCCCcccH--HHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcc
Q 010254 86 RADAVVLTYACDRPETL--DELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (514)
Q Consensus 86 ~ad~ii~v~d~~~~~s~--~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 163 (514)
.+|++++|+|++++.++ +... .|+..+.....+.|+++|+||+|+... +.. .+ ...+... . ..++++|||+
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~-~~~~~l~~~~~~~pvilv~NK~Dl~~~-~~~--~~-~~~~~~~-~-~~~~~~~Sa~ 151 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQL-SLFEEIKPLFKNKPVIVVLNKIDLLTF-EDL--SE-IEEEEEL-E-GEEVLKISTL 151 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHH-HHHHHHHhhcCcCCeEEEEEccccCch-hhH--HH-HHHhhhh-c-cCceEEEEec
Confidence 46999999999886653 4433 377777665457999999999999764 111 11 2222222 2 2279999999
Q ss_pred ccccceecCCCCChhhHHHHHHHHHHHh
Q 010254 164 KQIQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 164 ~~~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
+|. |++++++.+.+.+
T Consensus 152 ~~~------------gi~~l~~~l~~~~ 167 (168)
T cd01897 152 TEE------------GVDEVKNKACELL 167 (168)
T ss_pred ccC------------CHHHHHHHHHHHh
Confidence 999 9999999887654
No 210
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.85 E-value=1.9e-20 Score=169.14 Aligned_cols=136 Identities=22% Similarity=0.247 Sum_probs=109.6
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 450 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv 450 (514)
||+++|++|||||||+++|.++.+...+.++.+..+. ..+..++....+.+|||+|++.+..+. ..+++.+|++|+|
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~--~~~~~~a~~~ilv 78 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLR--SLSYADTDVIMLC 78 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccc--cccccCCCEEEEE
Confidence 7999999999999999999999998888777776654 445555344567799999999988766 5678999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-------------cchhhHHHHHHHcC-Cccc
Q 010254 451 HDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-------------MAIQDSTRVFTFLV-MVLY 513 (514)
Q Consensus 451 ~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~-~~~~ 513 (514)
||+++++||+.+. .|+..+.... ++.|+++|+||+|+...+ +...++.+++++++ ++||
T Consensus 79 ~dv~~~~sf~~~~~~~~~~i~~~~----~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 152 (189)
T cd04134 79 FSVDSPDSLENVESKWLGEIREHC----PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYL 152 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEE
Confidence 9999999999986 5888887643 279999999999997643 23456778888776 5554
No 211
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.84 E-value=2.2e-20 Score=168.91 Aligned_cols=132 Identities=15% Similarity=0.194 Sum_probs=111.6
Q ss_pred eCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCC
Q 010254 375 FGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSS 454 (514)
Q Consensus 375 iG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~ 454 (514)
+|.+|||||||+++|+.+.+...+.++.+.++....+.++++...+.+|||+|+++|..++ ..+++++|++|+|||++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~--~~~~~~ad~~ilV~D~t 78 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLR--DGYYIQGQCAIIMFDVT 78 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhh--HHHhcCCCEEEEEEECC
Confidence 6999999999999999999888787888877777777777556677799999999998877 57899999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 455 DESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 455 ~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
++.||+.+..|+..+.... +++|+++||||+|+....+.. +..++++..++.||
T Consensus 79 ~~~S~~~i~~w~~~i~~~~----~~~piilvgNK~Dl~~~~v~~-~~~~~~~~~~~~~~ 132 (200)
T smart00176 79 ARVTYKNVPNWHRDLVRVC----ENIPIVLCGNKVDVKDRKVKA-KSITFHRKKNLQYY 132 (200)
T ss_pred ChHHHHHHHHHHHHHHHhC----CCCCEEEEEECcccccccCCH-HHHHHHHHcCCEEE
Confidence 9999999999999988754 279999999999996544443 33478888888775
No 212
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.84 E-value=4e-20 Score=163.26 Aligned_cols=139 Identities=19% Similarity=0.316 Sum_probs=116.8
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|.+..+...+.++.+.++....+...+......+||++|.+.+.... ...++.+|++++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~~il 78 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSIT--SSYYRGAVGALL 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH--HHHhCCCCEEEE
Confidence 589999999999999999999999887777787877777777776344566799999998888765 678899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
|||++++.+++.+..|+..+..... +++|+++|+||+|+...+ ...+.+++++++++++++
T Consensus 79 v~d~~~~~s~~~~~~~l~~~~~~~~---~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T smart00175 79 VYDITNRESFENLKNWLKELREYAD---PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFF 140 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEE
Confidence 9999999999999999998877642 279999999999987643 456778889998888765
No 213
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.84 E-value=5.7e-20 Score=169.70 Aligned_cols=163 Identities=15% Similarity=0.233 Sum_probs=123.0
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccc--ccceeCCeeEEEEEeCCCCccchhhHHHhhhccC
Q 010254 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRL--PEDFYPDRVPITIIDTPSSVEDRGKLGEELRRAD 88 (514)
Q Consensus 11 ~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~--~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad 88 (514)
...+..+||+++|++|||||||+++++.+.+...+.++.+.... ......+.+.+.+|||+|.+.+......++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 34456799999999999999999998887765544443332222 2223456789999999999888877888899999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccc
Q 010254 89 AVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (514)
Q Consensus 89 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~ 168 (514)
++++|||++++.++..+.. |...+.....+.|+++|+||+|+.+. ....+ . ..+.+..+. .++++||++|.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~i~lv~nK~Dl~~~--~~~~~-~-~~~~~~~~~--~~~e~Sa~~~~-- 154 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPN-WHRDIVRVCENIPIVLVGNKVDVKDR--QVKAR-Q-ITFHRKKNL--QYYDISAKSNY-- 154 (215)
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECccCccc--cCCHH-H-HHHHHHcCC--EEEEEeCCCCC--
Confidence 9999999999999998875 88888776668999999999998643 11111 1 233444332 78999999999
Q ss_pred eecCCCCChhhHHHHHHHHHHHhc
Q 010254 169 KCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 169 ~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|+++++..|.+.+.
T Consensus 155 ----------~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 155 ----------NFEKPFLWLARRLT 168 (215)
T ss_pred ----------CHHHHHHHHHHHHh
Confidence 88888877776554
No 214
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.84 E-value=5.3e-20 Score=162.29 Aligned_cols=139 Identities=20% Similarity=0.270 Sum_probs=117.3
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|++.++...+.++.+..+....+.+++....+.+||++|++++.... ...++++|++++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~--~~~~~~~~~~i~ 79 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLA--PMYYRGAAAAIV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHH--HHHhccCCEEEE
Confidence 799999999999999999999999987677787877777888887555577799999998888766 567899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
|||++++++|+.+..|+..+..... +++|+++++||+|+...+ ....+...+++.++++++
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 141 (163)
T cd01860 80 VYDITSEESFEKAKSWVKELQRNAS---PNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFF 141 (163)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEE
Confidence 9999999999999999998876642 279999999999987543 456677888888886654
No 215
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.84 E-value=5.1e-20 Score=162.61 Aligned_cols=138 Identities=19% Similarity=0.303 Sum_probs=112.1
Q ss_pred EEEEEeCCCCCChHHHHHHhhCC--CCCCCCCCCCCccEEEEEEECCC-CcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGR--PFSDNYTPTTDERYAVNVVDQPG-GTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+||+++|++|||||||+++|..+ .+...+.++.+.++..+.+...+ ....+.+|||+|++.+..+. ...++++|+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~ 78 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMV--SNYWESPSV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHH--HHHhCCCCE
Confidence 48999999999999999999865 67777777777777666666543 34567799999999888766 578899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||+++++||+.+..|+..+.... .+.|+++|+||+|+...+ +...+++.++..++++++
T Consensus 79 ii~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04101 79 FILVYDVSNKASFENCSRWVNKVRTAS----KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFF 142 (164)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEE
Confidence 999999999999999999998887654 269999999999996644 445556777777777754
No 216
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.84 E-value=2.7e-20 Score=166.73 Aligned_cols=160 Identities=24% Similarity=0.304 Sum_probs=132.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-cccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~-tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
..+||+++|.+|||||+|..+++...|...+.++.+. .+.+..++.+.+.+.|+||+|++++..+...+++.+|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 4689999999999999999999999998887776664 336667777788999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHh-cC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceec
Q 010254 94 YACDRPETLDELSTFWLPELRR-LE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCF 171 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~-~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f 171 (514)
|+++++.||+.+.. +...+.+ .. ...|+++||||+|+... |.+..++. ..++..+.+ +++|+||+.+.
T Consensus 82 ysitd~~SF~~~~~-l~~~I~r~~~~~~~PivlVGNK~Dl~~~-R~V~~eeg-~~la~~~~~--~f~E~Sak~~~----- 151 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQ-LREQILRVKGRDDVPIILVGNKCDLERE-RQVSEEEG-KALARSWGC--AFIETSAKLNY----- 151 (196)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhCcCCCCEEEEEEcccchhc-cccCHHHH-HHHHHhcCC--cEEEeeccCCc-----
Confidence 99999999999987 5555533 22 45899999999999886 66766653 567777776 69999999998
Q ss_pred CCCCChhhHHHHHHHHHHHh
Q 010254 172 NSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 172 ~~~l~~~~i~~L~~~i~~~~ 191 (514)
+++++...+...+
T Consensus 152 -------~v~~~F~~L~r~~ 164 (196)
T KOG0395|consen 152 -------NVDEVFYELVREI 164 (196)
T ss_pred -------CHHHHHHHHHHHH
Confidence 6666665555433
No 217
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.2e-20 Score=148.73 Aligned_cols=149 Identities=23% Similarity=0.345 Sum_probs=123.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--cccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP--TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~--tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
.-+|-+|+|+-|||||+|+..+..++|...-+.+++. -|.-.++....+++.||||+|+++++...+.+++.+-..++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 3579999999999999999999999987665543332 12334566778999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccc
Q 010254 93 TYACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~ 168 (514)
|||++.+.++..+.. |+...+.. +|+..+++++||.||... |.+..++. .+++++.+- .++++||++|.|+
T Consensus 90 vyditrrstynhlss-wl~dar~ltnpnt~i~lignkadle~q-rdv~yeea-k~faeengl--~fle~saktg~nv 161 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSS-WLTDARNLTNPNTVIFLIGNKADLESQ-RDVTYEEA-KEFAEENGL--MFLEASAKTGQNV 161 (215)
T ss_pred EEEehhhhhhhhHHH-HHhhhhccCCCceEEEEecchhhhhhc-ccCcHHHH-HHHHhhcCe--EEEEecccccCcH
Confidence 999999999998886 99888876 477889999999999887 66776654 567776554 7899999999966
No 218
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.84 E-value=3.1e-20 Score=170.05 Aligned_cols=130 Identities=15% Similarity=0.237 Sum_probs=105.9
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|.+|||||||+++|+.+++.. +.++.+..+....+ +...+.+|||+|++.|..+. ..+++++|++|+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~--~~~~~~ad~~Il 73 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLG--SMYCRGAAAVIL 73 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhH--HHHhccCCEEEE
Confidence 489999999999999999999999875 44666655443322 33456799999999998776 567899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc-------------------cc-cchhhHHHHHHHcC
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS-------------------FA-MAIQDSTRVFTFLV 509 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-------------------~~-~~~~~~~~~~~~~~ 509 (514)
|||+++++||+.+..|+..+..... ++.|++|||||+|+.. .+ +..+++.++|++++
T Consensus 74 V~Dvt~~~Sf~~l~~~~~~l~~~~~---~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~ 150 (220)
T cd04126 74 TYDVSNVQSLEELEDRFLGLTDTAN---EDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRIN 150 (220)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhC
Confidence 9999999999999998877765432 3699999999999965 23 66789999999876
No 219
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.84 E-value=4.4e-20 Score=167.60 Aligned_cols=138 Identities=14% Similarity=0.176 Sum_probs=112.1
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCC-CCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSD-NYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
+||+++|++|||||||+++|+++.+.. .+.++.+..+..+.+.+++......+||++|++++..+. ...++++|+++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--~~~~~~~d~ii 78 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMS--RIYYRGAKAAI 78 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhh--HhhcCCCCEEE
Confidence 489999999999999999999998874 566777777777778887444556699999998887765 56788999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-----ccchhhHHHHHHHcCCccc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-----AMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~ 513 (514)
+|||++++.||+.+..|+..+.... ++.|+++|+||+|+... .+...++.++++.+++++|
T Consensus 79 lv~d~~~~~s~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~ 144 (193)
T cd04118 79 VCYDLTDSSSFERAKFWVKELQNLE----EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHF 144 (193)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhcC----CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEE
Confidence 9999999999999999998887653 26999999999998642 1334567788888777654
No 220
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.84 E-value=2.5e-20 Score=166.97 Aligned_cols=140 Identities=21% Similarity=0.302 Sum_probs=120.8
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.+||+++|.+|||||+|+.+|+++.|...|.|+....+. +.+.++++.....|+||+|++++..+. ..+++.+|+++
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~-k~~~v~~~~~~l~ilDt~g~~~~~~~~--~~~~~~~~gF~ 79 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYR-KELTVDGEVCMLEILDTAGQEEFSAMR--DLYIRNGDGFL 79 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCccccce-EEEEECCEEEEEEEEcCCCcccChHHH--HHhhccCcEEE
Confidence 479999999999999999999999999999988885444 666677455566699999998988776 57889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+||+++++.||+.+..++..|.+..... .+|+++||||+|+...+ +..++++++++.++++|+
T Consensus 80 lVysitd~~SF~~~~~l~~~I~r~~~~~--~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~ 143 (196)
T KOG0395|consen 80 LVYSITDRSSFEEAKQLREQILRVKGRD--DVPIILVGNKCDLERERQVSEEEGKALARSWGCAFI 143 (196)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcC--CCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEE
Confidence 9999999999999999999985443322 68999999999999866 889999999999999875
No 221
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.83 E-value=4.6e-20 Score=164.62 Aligned_cols=135 Identities=20% Similarity=0.275 Sum_probs=108.6
Q ss_pred EEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEEE
Q 010254 372 CFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVH 451 (514)
Q Consensus 372 i~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~ 451 (514)
|+|+|++|||||||+++|+++.+...+.++....+. ..+..++....+.+|||+|++.+..+. ...++++|++|+||
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~ilv~ 77 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRLR--PLSYPDTDVFLICF 77 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchhc--hhhcCCCCEEEEEE
Confidence 589999999999999999999998877776655544 445556334456799999999888765 56789999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-------------cchhhHHHHHHHcCC-ccc
Q 010254 452 DSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-------------MAIQDSTRVFTFLVM-VLY 513 (514)
Q Consensus 452 D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~-~~~ 513 (514)
|+++++||+.+. .|+..+.... ++.|+++|+||+|+..++ +..+++.++++++++ .||
T Consensus 78 d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 150 (174)
T smart00174 78 SVDSPASFENVKEKWYPEVKHFC----PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYL 150 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEE
Confidence 999999999996 5888887653 379999999999996522 456678889999886 554
No 222
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.83 E-value=9.5e-20 Score=164.46 Aligned_cols=137 Identities=17% Similarity=0.204 Sum_probs=104.0
Q ss_pred eEEEEEeCCCCCChHHHHH-HhhCCC-----CCCCCCCCCCc--cEEEEE-------EECCCCcEEEEEEecCChhHHHh
Q 010254 369 VFQCFVFGPKKAGKSVLLN-SFLGRP-----FSDNYTPTTDE--RYAVNV-------VDQPGGTKKTVVLREIPEEAVAK 433 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~-~l~~~~-----~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~i~dt~g~~~~~~ 433 (514)
.+||+++|++|||||||++ ++.++. +...+.||.+. .+.... +.+++......+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 3799999999999999996 665543 34455566642 232221 134534556679999999753
Q ss_pred hhcCccccccCcEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcc-------------------
Q 010254 434 LLSNKDSLAACDIAVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDS------------------- 493 (514)
Q Consensus 434 ~~~~~~~~~~~d~vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~------------------- 493 (514)
+. ..+++++|++|+|||++++.||+.+. .|+..+.... ++.|+++||||+||..
T Consensus 80 ~~--~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~----~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~ 153 (195)
T cd01873 80 DR--RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC----PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKN 153 (195)
T ss_pred hh--cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC----CCCCEEEEEEchhccccccchhhhccccccccccc
Confidence 22 45789999999999999999999997 5988887654 2689999999999864
Q ss_pred -cccchhhHHHHHHHcCCccc
Q 010254 494 -FAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 494 -~~~~~~~~~~~~~~~~~~~~ 513 (514)
..+..++++++|++++++||
T Consensus 154 ~~~V~~~e~~~~a~~~~~~~~ 174 (195)
T cd01873 154 ADILPPETGRAVAKELGIPYY 174 (195)
T ss_pred CCccCHHHHHHHHHHhCCEEE
Confidence 23678899999999999886
No 223
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.83 E-value=3.1e-20 Score=159.79 Aligned_cols=136 Identities=20% Similarity=0.244 Sum_probs=94.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCc----cchhhHHHhhhccCEEEEE
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSV----EDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~~~~ad~ii~v 93 (514)
||+++|++|||||||+|+|++..+ .+. .|....+. ..+|||||.. .........++++|++++|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~-----~t~~~~~~-----~~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv 69 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYK-----KTQAVEYN-----DGAIDTPGEYVENRRLYSALIVTAADADVIALV 69 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccc-----cceeEEEc-----CeeecCchhhhhhHHHHHHHHHHhhcCCEEEEE
Confidence 899999999999999999998874 221 12222222 1789999973 1111222357899999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCC
Q 010254 94 YACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNS 173 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~ 173 (514)
||++++.++... .|...+ ..|+++|+||+|+.+. .... +....+.+..+. .+++++||++|.
T Consensus 70 ~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~--~~~~-~~~~~~~~~~~~-~~~~~~Sa~~~~------- 131 (142)
T TIGR02528 70 QSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEA--DVDI-ERAKELLETAGA-EPIFEISSVDEQ------- 131 (142)
T ss_pred ecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCc--ccCH-HHHHHHHHHcCC-CcEEEEecCCCC-------
Confidence 999999887653 254432 3599999999998653 1222 223444444432 278999999999
Q ss_pred CCChhhHHHHHHHHH
Q 010254 174 PLQPSEIVGVKRVVQ 188 (514)
Q Consensus 174 ~l~~~~i~~L~~~i~ 188 (514)
|++++.+.+.
T Consensus 132 -----gi~~l~~~l~ 141 (142)
T TIGR02528 132 -----GLEALVDYLN 141 (142)
T ss_pred -----CHHHHHHHHh
Confidence 8998887763
No 224
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.83 E-value=5.8e-20 Score=179.86 Aligned_cols=150 Identities=18% Similarity=0.178 Sum_probs=105.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeC-CeeEEEEEeCCCCcc--chhh------HHH
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYP-DRVPITIIDTPSSVE--DRGK------LGE 82 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~-~~~~~~l~Dt~G~~~--~~~~------~~~ 82 (514)
..++|+|+|.||||||||+|+|++.++ .+...+++|... .+.. ++.++.+|||||+.+ .... ...
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~---~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle 264 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADV---YAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLE 264 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCce---eeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHH
Confidence 448999999999999999999999863 222233333221 2222 467899999999832 1111 223
Q ss_pred hhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcC
Q 010254 83 ELRRADAVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECS 161 (514)
Q Consensus 83 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 161 (514)
.+.+||++++|+|++++.+.+.... |...+.... .++|+++|+||+|+.+. . ....+.. ...++++||
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l~~~~~piIlV~NK~Dl~~~-~------~v~~~~~---~~~~~i~iS 333 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEA-VEKVLEELGAEDIPQLLVYNKIDLLDE-P------RIERLEE---GYPEAVFVS 333 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHH-HHHHHHHhccCCCCEEEEEEeecCCCh-H------hHHHHHh---CCCCEEEEE
Confidence 5889999999999999887776653 666666543 37899999999999754 1 1111111 112689999
Q ss_pred ccccccceecCCCCChhhHHHHHHHHHHH
Q 010254 162 ALKQIQVKCFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 162 a~~~~~~~~f~~~l~~~~i~~L~~~i~~~ 190 (514)
|++|. |+++|++.|.+.
T Consensus 334 Aktg~------------GI~eL~~~I~~~ 350 (351)
T TIGR03156 334 AKTGE------------GLDLLLEAIAER 350 (351)
T ss_pred ccCCC------------CHHHHHHHHHhh
Confidence 99999 999999988754
No 225
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.83 E-value=1.1e-19 Score=162.08 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=110.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
..+.++|+|+|++|||||||+++|.+..+.. +.++.+ .+. ..+...+..+.+|||||...+...+..+++.+|++++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g-~~~-~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQG-FNI-KTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCC-cce-EEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 3457999999999999999999999986532 222111 111 1233346889999999998877777888999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhcc------CcEEEcCcccc
Q 010254 93 TYACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI------ETCIECSALKQ 165 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~Sa~~~ 165 (514)
|+|+++..++......+...+... ..++|+++++||+|+.... ....+.+.++.. .++++|||++|
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~ 160 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA-------PAEEIAEALNLHDLRDRTWHIQACSAKTG 160 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC-------CHHHHHHHcCCcccCCCeEEEEEeECCCC
Confidence 999998877777665344443322 1369999999999986541 112233333211 14789999999
Q ss_pred ccceecCCCCChhhHHHHHHHHHH
Q 010254 166 IQVKCFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 166 ~~~~~f~~~l~~~~i~~L~~~i~~ 189 (514)
. |++++.++|.+
T Consensus 161 ~------------gi~~~~~~l~~ 172 (173)
T cd04155 161 E------------GLQEGMNWVCK 172 (173)
T ss_pred C------------CHHHHHHHHhc
Confidence 9 99999988864
No 226
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=1.5e-19 Score=175.40 Aligned_cols=157 Identities=22% Similarity=0.262 Sum_probs=112.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeC-CeeEEEEEeCCCCccch----h---hHHHhhh
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYP-DRVPITIIDTPSSVEDR----G---KLGEELR 85 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~-~~~~~~l~Dt~G~~~~~----~---~~~~~~~ 85 (514)
..|+|||.||||||||+|+|++.+ .. ....+.||+.. .+.. +..++.+|||||+.+.. . .....++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~--~~-va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie 235 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK--PK-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIE 235 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC--Cc-cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhh
Confidence 479999999999999999999876 22 23345555332 2222 45689999999985422 1 2234567
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCc
Q 010254 86 RADAVVLTYACDRPETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSA 162 (514)
Q Consensus 86 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 162 (514)
+++++++|+|+++..+++.+.. |...+..+. .++|+++|+||+|+.+. .... ++....+.+.+. .++++|||
T Consensus 236 ~a~vlI~ViD~s~~~s~e~~~~-~~~EL~~~~~~L~~kp~IIV~NKiDL~~~-~~~~-~~~~~~~~~~~~--~~i~~iSA 310 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPVEDYKT-IRNELEKYSPELADKPRILVLNKIDLLDE-EEER-EKRAALELAALG--GPVFLISA 310 (335)
T ss_pred hcCEEEEEEcCCCCCCHHHHHH-HHHHHHHhhhhcccCCeEEEEECcccCCc-hhHH-HHHHHHHHHhcC--CCEEEEEc
Confidence 8999999999998778888765 888887764 26899999999999764 1111 112222223332 27999999
Q ss_pred cccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 163 LKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 163 ~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
+++. |+++|++.|.+.+..
T Consensus 311 ktg~------------GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 311 VTGE------------GLDELLRALWELLEE 329 (335)
T ss_pred CCCC------------CHHHHHHHHHHHHHh
Confidence 9999 999999999887654
No 227
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.83 E-value=1.1e-19 Score=161.90 Aligned_cols=137 Identities=16% Similarity=0.252 Sum_probs=109.3
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||++++.++.+...+.++... .....+.+++....+.+|||+|++++..++ ...++++|++|+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~a~~~i~ 77 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFD-NFSVVVLVDGKPVRLQLCDTAGQDEFDKLR--PLCYPDTDVFLL 77 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeeEEEEECCEEEEEEEEECCCChhhcccc--ccccCCCcEEEE
Confidence 58999999999999999999999998877666543 333456666344566799999999988776 467899999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC-ccc
Q 010254 450 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-VLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~-~~~ 513 (514)
|||+++++||+.+. .|+..+.... ++.|+++|+||+|+... .+..+++.++++++++ .|+
T Consensus 78 v~d~~~~~sf~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~ 152 (173)
T cd04130 78 CFSVVNPSSFQNISEKWIPEIRKHN----PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYI 152 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEE
Confidence 99999999999985 6887776542 26999999999998642 2456778899998887 554
No 228
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.83 E-value=9.7e-20 Score=159.60 Aligned_cols=154 Identities=17% Similarity=0.214 Sum_probs=108.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCC
Q 010254 19 IVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDR 98 (514)
Q Consensus 19 I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~ 98 (514)
|+|+|++|||||||+|+|.+.++.....++...... .+..+...+.+|||||.+.+...+..+++.+|++++|+|+++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 79 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAAD 79 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCC
Confidence 899999999999999999999875554332221111 233445889999999999888888899999999999999998
Q ss_pred cccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCcccccchhHhhhhHHHH-HHH-hccCcEEEcCccccccceecCCCC
Q 010254 99 PETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIM-QQF-REIETCIECSALKQIQVKCFNSPL 175 (514)
Q Consensus 99 ~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~-~~~~~~i~~Sa~~~~~~~~f~~~l 175 (514)
+.++......+...+... ..++|+++|+||+|+.+.. . ..+....+. ... ....+++++||++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~--------- 147 (159)
T cd04159 80 RTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL-S--VDELIEQMNLKSITDREVSCYSISCKEKT--------- 147 (159)
T ss_pred HHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc-C--HHHHHHHhCcccccCCceEEEEEEeccCC---------
Confidence 877776655333333321 1478999999999987641 1 111111110 000 011268999999999
Q ss_pred ChhhHHHHHHHHHH
Q 010254 176 QPSEIVGVKRVVQE 189 (514)
Q Consensus 176 ~~~~i~~L~~~i~~ 189 (514)
|++++++.|.+
T Consensus 148 ---gi~~l~~~l~~ 158 (159)
T cd04159 148 ---NIDIVLDWLIK 158 (159)
T ss_pred ---ChHHHHHHHhh
Confidence 99999888764
No 229
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.83 E-value=1.4e-19 Score=160.38 Aligned_cols=154 Identities=16% Similarity=0.106 Sum_probs=106.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeC---CeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYP---DRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
.|+|+|++|||||||+|+|.+.++.... .+++|.. ..+.. .+..+.+|||||++.+...+..++..+|+++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il 78 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGE---AGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAI 78 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccccc---CCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEE
Confidence 5899999999999999999988764431 1222211 12222 3678999999999888777777889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHH----HHhccCcEEEcCcccccc
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQ----QFREIETCIECSALKQIQ 167 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~Sa~~~~~ 167 (514)
+|+|+++....+... .+..++.. ++|+++|+||+|+... ......+....+.. .++...+++++||++|.
T Consensus 79 ~v~d~~~~~~~~~~~--~~~~~~~~--~~p~ivv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~- 152 (168)
T cd01887 79 LVVAADDGVMPQTIE--AIKLAKAA--NVPFIVALNKIDKPNA-NPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGE- 152 (168)
T ss_pred EEEECCCCccHHHHH--HHHHHHHc--CCCEEEEEEceecccc-cHHHHHHHHHHhhccccccccCcCcEEEeecccCC-
Confidence 999998754333322 33444544 7999999999998754 11111112221111 11112379999999999
Q ss_pred ceecCCCCChhhHHHHHHHHHHHh
Q 010254 168 VKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 168 ~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
|+++|++.+.+..
T Consensus 153 -----------gi~~l~~~l~~~~ 165 (168)
T cd01887 153 -----------GIDDLLEAILLLA 165 (168)
T ss_pred -----------CHHHHHHHHHHhh
Confidence 9999999987653
No 230
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=8.5e-20 Score=187.29 Aligned_cols=158 Identities=17% Similarity=0.162 Sum_probs=113.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccc----------hhh-H
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVED----------RGK-L 80 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~----------~~~-~ 80 (514)
..++|+|+|+||||||||+|+|++.++ ..++..++||.. ..+..++.++.+|||||+... ... .
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~--~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEER--SVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCc--ccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHH
Confidence 468999999999999999999999873 344456666633 234445678899999997422 111 1
Q ss_pred HHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc--cCcEE
Q 010254 81 GEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--IETCI 158 (514)
Q Consensus 81 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~i 158 (514)
..+++.||++++|+|++++.+.++.. ++..+... ++|+|+|+||+|+.......... ..+.+.+.. ..+++
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~--~~~~~~~~--~~piIiV~NK~Dl~~~~~~~~~~---~~i~~~l~~~~~~~~~ 360 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR--VLSMVIEA--GRALVLAFNKWDLVDEDRRYYLE---REIDRELAQVPWAPRV 360 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECcccCChhHHHHHH---HHHHHhcccCCCCCEE
Confidence 34578999999999999988888765 66666654 89999999999997541111111 222222221 23889
Q ss_pred EcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 159 ECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 159 ~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
+|||++|. |++++.+.+.+.+..
T Consensus 361 ~~SAk~g~------------gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 361 NISAKTGR------------AVDKLVPALETALES 383 (472)
T ss_pred EEECCCCC------------CHHHHHHHHHHHHHH
Confidence 99999999 999999998876653
No 231
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.83 E-value=1.2e-19 Score=158.62 Aligned_cols=133 Identities=18% Similarity=0.288 Sum_probs=104.3
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++++.+.+...+.++ +..+ ...+.+.+......+|||+|++.. .+++.+|++++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~~-------~~~~~~~~~il 71 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPDA-------QFASWVDAVIF 71 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCch-------hHHhcCCEEEE
Confidence 48999999999999999999999888766443 3344 366777733445679999999652 24578999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc---cccchhhHHHHHHHc-CCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS---FAMAIQDSTRVFTFL-VMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~-~~~~~ 513 (514)
|||+++++||+.+..|+..+...... ++.|+++||||.|+.. ..+...+++++++++ ++.|+
T Consensus 72 v~d~~~~~sf~~~~~~~~~i~~~~~~--~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~ 137 (158)
T cd04103 72 VFSLENEASFQTVYNLYHQLSSYRNI--SEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYY 137 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEE
Confidence 99999999999999999988765422 2689999999999853 235677788899876 47765
No 232
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.82 E-value=1.4e-19 Score=160.35 Aligned_cols=139 Identities=22% Similarity=0.308 Sum_probs=113.2
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|.++.+...+.++.+..+ .+.+.+++....+.+|||+|++.|..++ ...++.++++++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~vl 78 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMR--ELYIKSGQGFLL 78 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhh--HHHHhhCCEEEE
Confidence 6899999999999999999999998877777766544 4666666444566799999999998776 577899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcC-Cccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLV-MVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~-~~~~ 513 (514)
|||++++++++.+..|...+...... .++|+++|+||.|+...+ ...++...+++.++ +++|
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~--~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (168)
T cd04177 79 VYSVTSEASLNELGELREQVLRIKDS--DNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFY 142 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCC--CCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEE
Confidence 99999999999999998887654322 279999999999997654 45667778888877 6655
No 233
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.82 E-value=1.3e-19 Score=169.33 Aligned_cols=141 Identities=18% Similarity=0.329 Sum_probs=108.6
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|+++++...+.++.+ ++..+.+.+.+....+.+|||+|.+.|..+. ..++..+|++|+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~--~~~~~~ad~iIl 77 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMR--RLSILTGDVFIL 77 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHH--HHHhccCCEEEE
Confidence 4899999999999999999999999887766665 4555667776344456699999999888765 456789999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCC------CCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHH-cCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGE------DTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTF-LVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~------~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~-~~~~~~ 513 (514)
|||+++++||+.+..|+..+..... ....+.|+|+|+||+|+...+ +...+..+++.. .++.|+
T Consensus 78 Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~ 149 (247)
T cd04143 78 VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYF 149 (247)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEE
Confidence 9999999999999999888865421 112379999999999997633 556666666553 244443
No 234
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.82 E-value=2.4e-19 Score=157.78 Aligned_cols=139 Identities=17% Similarity=0.264 Sum_probs=112.7
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|++..+...+.++.+..+....+...+....+.+||++|++.+..+. ...++.+|++++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--~~~~~~~~~~i~ 78 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALG--PIYYRDADGAIL 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhh--HHHhccCCEEEE
Confidence 489999999999999999999999877666666666666666666344566799999998888766 567789999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
|||++++++++.+..|+..+...... ++|+++|+||+|+...+ ....+..++++.++++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (162)
T cd04123 79 VYDITDADSFQKVKKWIKELKQMRGN---NISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHF 140 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 99999999999999999888776532 68999999999998544 445667778888777654
No 235
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.82 E-value=1.6e-19 Score=166.67 Aligned_cols=138 Identities=21% Similarity=0.315 Sum_probs=109.4
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCC-CCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccc-cCcEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFS-DNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLA-ACDIA 447 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~-~~d~v 447 (514)
+||+++|++|||||||+++|+++.+. ..+.++.+.++..+.+.+.+......+|||+|++.+. . ...++ ++|++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~--~--~~~~~~~ad~i 76 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMWT--E--DSCMQYQGDAF 76 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchHH--H--hHHhhcCCCEE
Confidence 48999999999999999999988886 6666666656666777777455567799999997322 1 23455 89999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++|||++++.||+.+..|+..+...... .++|+++|+||+|+...+ +..+++.+++..++++|+
T Consensus 77 ilV~d~td~~S~~~~~~~~~~l~~~~~~--~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~ 141 (221)
T cd04148 77 VVVYSVTDRSSFERASELRIQLRRNRQL--EDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFI 141 (221)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEE
Confidence 9999999999999999999888765321 279999999999997654 566777888888888765
No 236
>PRK00089 era GTPase Era; Reviewed
Probab=99.82 E-value=2.6e-19 Score=173.21 Aligned_cols=160 Identities=23% Similarity=0.299 Sum_probs=113.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccchh--------hHHHh
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRG--------KLGEE 83 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~ 83 (514)
+...|+|+|+||||||||+|+|++.++ +..+..+.||.. ..+..++..+.++||||+..... .....
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~--~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCce--eecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 345699999999999999999999884 333334444422 22334567899999999865432 22346
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcc
Q 010254 84 LRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (514)
Q Consensus 84 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 163 (514)
+..+|++++|+|++++.+ .....+...+... +.|+++|+||+|+... ..........+.+.++ ..+++++||+
T Consensus 82 ~~~~D~il~vvd~~~~~~--~~~~~i~~~l~~~--~~pvilVlNKiDl~~~--~~~l~~~~~~l~~~~~-~~~i~~iSA~ 154 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIG--PGDEFILEKLKKV--KTPVILVLNKIDLVKD--KEELLPLLEELSELMD-FAEIVPISAL 154 (292)
T ss_pred HhcCCEEEEEEeCCCCCC--hhHHHHHHHHhhc--CCCEEEEEECCcCCCC--HHHHHHHHHHHHhhCC-CCeEEEecCC
Confidence 789999999999987433 2223355666544 7899999999999743 1122233344444333 3479999999
Q ss_pred ccccceecCCCCChhhHHHHHHHHHHHhcCcc
Q 010254 164 KQIQVKCFNSPLQPSEIVGVKRVVQEKLREGV 195 (514)
Q Consensus 164 ~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~ 195 (514)
++. |+++|.+.+.+.+++++
T Consensus 155 ~~~------------gv~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 155 KGD------------NVDELLDVIAKYLPEGP 174 (292)
T ss_pred CCC------------CHHHHHHHHHHhCCCCC
Confidence 999 99999999999988654
No 237
>PLN03118 Rab family protein; Provisional
Probab=99.82 E-value=2.3e-19 Score=165.09 Aligned_cols=141 Identities=17% Similarity=0.234 Sum_probs=112.8
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|++..+. .+.++.+.++.+..+..++....+.+|||+|++.+..+. ..+++.+|++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~d~~ 89 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLT--SSYYRNAQGI 89 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHH--HHHHhcCCEE
Confidence 3489999999999999999999998875 445777777777777776445567799999999998776 5788999999
Q ss_pred EEEEeCCChhhHHHHHH-HHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATE-LLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++|||+++++||+.+.. |...+...... .+.|+++|+||+|+...+ ...++..+++++++++||
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~ 155 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTN--QDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFL 155 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEE
Confidence 99999999999999976 65555443321 268999999999997654 456777888888888765
No 238
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.82 E-value=8e-20 Score=161.51 Aligned_cols=139 Identities=22% Similarity=0.361 Sum_probs=107.8
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHH-HhhhcCccccccCcEEEE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV-AKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~-~~~~~~~~~~~~~d~vil 449 (514)
||+++|++|||||||+++++...+...+.++....+. ..+.+.++...+.+||++|.+.+ .... ...++.+|++|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~--~~~~~~~d~~i~ 77 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYS-RQVTIDGEQVSLEILDTAGQQQADTEQL--ERSIRWADGFVL 77 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhce-EEEEECCEEEEEEEEECCCCcccccchH--HHHHHhCCEEEE
Confidence 5899999999999999999998887777666544443 44555534445679999998753 2222 457889999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
|||++++.||+.+..|+..+...... ..+.|+++|+||+|+...+ +..+++.++++.++++||
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 141 (165)
T cd04146 78 VYSITDRSSFDEISQLKQLIREIKKR-DREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFF 141 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEE
Confidence 99999999999999998887764320 1269999999999986544 566778899999888875
No 239
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.82 E-value=2.5e-19 Score=162.05 Aligned_cols=160 Identities=17% Similarity=0.143 Sum_probs=113.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-------------CCCcccc---cceeCCeeEEEEEeCCCCccchhhHH
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPV-------------LPPTRLP---EDFYPDRVPITIIDTPSSVEDRGKLG 81 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~-------------~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~~~~ 81 (514)
+|+|+|.+|||||||+|+|++.......... ..+++.. ..+......+.+|||||...+.....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999998754332111 1122211 22334467899999999988888888
Q ss_pred HhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHh---------
Q 010254 82 EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR--------- 152 (514)
Q Consensus 82 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--------- 152 (514)
.+++.+|++++|+|++.+.+..... ++..+... ++|+++|+||+|+..........+.+.+..+.++
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~--~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTRE--HLRIAREG--GLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHH--HHHHHHHC--CCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 8899999999999998766544333 55555554 8999999999999863222222222223332221
Q ss_pred ---ccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 153 ---EIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 153 ---~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
...+++++||++|. |++++++.+.+.+|.
T Consensus 157 ~~~~~~~v~~~Sa~~g~------------gi~~l~~~l~~~l~~ 188 (189)
T cd00881 157 RNGLLVPIVPGSALTGI------------GVEELLEAIVEHLPP 188 (189)
T ss_pred ccCCcceEEEEecccCc------------CHHHHHHHHHhhCCC
Confidence 13489999999999 999999999988763
No 240
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.82 E-value=6.7e-21 Score=150.16 Aligned_cols=143 Identities=24% Similarity=0.337 Sum_probs=114.4
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCC--cccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCC
Q 010254 21 VCGEKGTGKSSLIVTAAADTFPAN-VPPVLPP--TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACD 97 (514)
Q Consensus 21 ivG~~nvGKSsLin~l~~~~~~~~-~~~~~~~--tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~ 97 (514)
++|++++|||+|+-|+-.+.|... ..++.+. ...-...+...+++++|||+|++++++....|++.||+.+++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 689999999999988877766433 1111111 1122244566889999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccc
Q 010254 98 RPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (514)
Q Consensus 98 ~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~ 168 (514)
++.+|++.+. |+..+..+. ....+.+++||+|+..+ |.+..++ -+.+++.|+- |++|+||++|.|+
T Consensus 82 nkasfdn~~~-wlsei~ey~k~~v~l~llgnk~d~a~e-r~v~~dd-g~kla~~y~i--pfmetsaktg~nv 148 (192)
T KOG0083|consen 82 NKASFDNCQA-WLSEIHEYAKEAVALMLLGNKCDLAHE-RAVKRDD-GEKLAEAYGI--PFMETSAKTGFNV 148 (192)
T ss_pred cchhHHHHHH-HHHHHHHHHHhhHhHhhhccccccchh-hccccch-HHHHHHHHCC--CceeccccccccH
Confidence 9999999997 999999885 35778999999999776 5555443 4678888875 9999999999966
No 241
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.82 E-value=2e-19 Score=157.39 Aligned_cols=145 Identities=19% Similarity=0.128 Sum_probs=103.1
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccchh--------hHHHhhhccC
Q 010254 20 VVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRG--------KLGEELRRAD 88 (514)
Q Consensus 20 ~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~ad 88 (514)
+++|.+|||||||+|+|++.+. ......+++|.. ......+..+.+|||||+..... .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRD--AIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcE--EeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 5899999999999999998762 222233444422 23334567899999999987543 2345688999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccc
Q 010254 89 AVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (514)
Q Consensus 89 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~ 168 (514)
++++|+|+.++.+..... +...+++. +.|+++|+||+|+.... .. ......++ ..+++++||+++.
T Consensus 79 ~ii~v~d~~~~~~~~~~~--~~~~~~~~--~~piiiv~nK~D~~~~~-~~------~~~~~~~~-~~~~~~~Sa~~~~-- 144 (157)
T cd01894 79 VILFVVDGREGLTPADEE--IAKYLRKS--KKPVILVVNKVDNIKEE-DE------AAEFYSLG-FGEPIPISAEHGR-- 144 (157)
T ss_pred EEEEEEeccccCCccHHH--HHHHHHhc--CCCEEEEEECcccCChH-HH------HHHHHhcC-CCCeEEEecccCC--
Confidence 999999988765544432 55666655 79999999999997651 11 11222332 2378999999999
Q ss_pred eecCCCCChhhHHHHHHHHHHH
Q 010254 169 KCFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 169 ~~f~~~l~~~~i~~L~~~i~~~ 190 (514)
|++++++.+.++
T Consensus 145 ----------gv~~l~~~l~~~ 156 (157)
T cd01894 145 ----------GIGDLLDAILEL 156 (157)
T ss_pred ----------CHHHHHHHHHhh
Confidence 999999998765
No 242
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.81 E-value=4.9e-19 Score=157.59 Aligned_cols=141 Identities=16% Similarity=0.222 Sum_probs=113.4
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||++++.+..+...+.++.+.++..+.+.++++...+.+||++|++.+..++ ...++++|++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--~~~~~~~d~~i~ 78 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLG--VAFYRGADCCVL 78 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHH--HHHhcCCCEEEE
Confidence 489999999999999999999999887777777877877777777444556699999998888776 578899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCC-CCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcC-Ccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGE-DTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLV-MVL 512 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~-~~~ 512 (514)
|||++++.+|+.+..|...+..... ....++|+++|+||+|+..++ ...++...+++..+ +++
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (172)
T cd01862 79 VYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPY 144 (172)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceE
Confidence 9999999999999999887655432 111269999999999998433 45666777888776 444
No 243
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.81 E-value=3e-19 Score=163.59 Aligned_cols=151 Identities=19% Similarity=0.191 Sum_probs=103.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeC-CeeEEEEEeCCCCccch--hh------HHH
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYP-DRVPITIIDTPSSVEDR--GK------LGE 82 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~-~~~~~~l~Dt~G~~~~~--~~------~~~ 82 (514)
..++|+|+|++|||||||+|+|++..+... ..+.+|.. ..+.. +...+.+|||||+.... .. ...
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 116 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAE---DQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLE 116 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccC---CccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHH
Confidence 348999999999999999999999873221 11122211 11222 23489999999984321 11 112
Q ss_pred hhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcC
Q 010254 83 ELRRADAVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECS 161 (514)
Q Consensus 83 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 161 (514)
.+..+|++++|+|++++.++..... |.+.+.... .++|+++|+||+|+.... .. ...... ...+++++|
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~-~~~~l~~~~~~~~~viiV~NK~Dl~~~~-~~------~~~~~~--~~~~~~~~S 186 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIET-VEKVLKELGAEDIPMILVLNKIDLLDDE-EL------EERLEA--GRPDAVFIS 186 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHH-HHHHHHHcCcCCCCEEEEEEccccCChH-HH------HHHhhc--CCCceEEEE
Confidence 3678999999999998888776653 777776653 368999999999997651 11 112222 123799999
Q ss_pred ccccccceecCCCCChhhHHHHHHHHHHH
Q 010254 162 ALKQIQVKCFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 162 a~~~~~~~~f~~~l~~~~i~~L~~~i~~~ 190 (514)
|+++. |++++.+.|...
T Consensus 187 a~~~~------------gi~~l~~~L~~~ 203 (204)
T cd01878 187 AKTGE------------GLDELLEAIEEL 203 (204)
T ss_pred cCCCC------------CHHHHHHHHHhh
Confidence 99999 999998888764
No 244
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.81 E-value=4.7e-19 Score=171.89 Aligned_cols=154 Identities=22% Similarity=0.253 Sum_probs=109.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeCC-eeEEEEEeCCCCccch----hhH---HHhhh
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYPD-RVPITIIDTPSSVEDR----GKL---GEELR 85 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~~-~~~~~l~Dt~G~~~~~----~~~---~~~~~ 85 (514)
..|+|+|.||||||||+|+|++.+. . +...+.||... .+... ...+.+|||||+.+.. ... ...++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~--~-va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhie 234 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP--K-IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIE 234 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc--c-ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 5799999999999999999998763 2 22233344221 22223 3789999999986432 222 23466
Q ss_pred ccCEEEEEEeCCCc---ccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEE
Q 010254 86 RADAVVLTYACDRP---ETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIE 159 (514)
Q Consensus 86 ~ad~ii~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (514)
++|++++|+|+++. .+++.+.. |..++..+. .++|++||+||+|+... ...++..+.+.+.++. ++++
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~-l~~EL~~~~~~l~~kp~IIV~NK~DL~~~---~~~~~~~~~l~~~~~~--~vi~ 308 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEI-IRNELKKYSPELAEKPRIVVLNKIDLLDE---EELAELLKELKKALGK--PVFP 308 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHH-HHHHHHHhhhhhccCCEEEEEeCccCCCh---HHHHHHHHHHHHHcCC--cEEE
Confidence 89999999999876 56666654 777776653 36899999999999765 1223333445444432 7999
Q ss_pred cCccccccceecCCCCChhhHHHHHHHHHHHh
Q 010254 160 CSALKQIQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 160 ~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
+||+++. |+++|++.|.+.+
T Consensus 309 iSAktg~------------GI~eL~~~I~~~l 328 (329)
T TIGR02729 309 ISALTGE------------GLDELLYALAELL 328 (329)
T ss_pred EEccCCc------------CHHHHHHHHHHHh
Confidence 9999999 9999999987754
No 245
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.81 E-value=3.6e-19 Score=161.30 Aligned_cols=161 Identities=18% Similarity=0.136 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC----CCCCCCCCCCCccccc-----ce------------eCCeeEEEEEeCCCCcc
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADT----FPANVPPVLPPTRLPE-----DF------------YPDRVPITIIDTPSSVE 75 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~----~~~~~~~~~~~tt~~~-----~~------------~~~~~~~~l~Dt~G~~~ 75 (514)
++|+++|++|||||||+++|++.. +........+++|+.. .+ ..++..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999999731 1122222222333222 11 12367899999999876
Q ss_pred chhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc-cchhHhhhhHHHHHHH---
Q 010254 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-QQVSLEQVMMPIMQQF--- 151 (514)
Q Consensus 76 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~--- 151 (514)
+..........+|++++|+|++++.+....+. +. ..... ++|+++|+||+|+.... .....++..+.+...+
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~-~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LV-IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHH-HH-HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 54444455678999999999987655444332 22 22333 67999999999997531 1111222222222222
Q ss_pred h-ccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 152 R-EIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 152 ~-~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
+ ...+++++||++|. |+++|++.+..+++.
T Consensus 157 ~~~~~~vi~iSa~~g~------------gi~~L~~~l~~~~~~ 187 (192)
T cd01889 157 RFKNSPIIPVSAKPGG------------GEAELGKDLNNLIVL 187 (192)
T ss_pred CcCCCCEEEEeccCCC------------CHHHHHHHHHhcccc
Confidence 1 11379999999999 999999999998764
No 246
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.81 E-value=1.2e-20 Score=156.62 Aligned_cols=140 Identities=18% Similarity=0.248 Sum_probs=125.5
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+|++|+|..+|||||+|++++.+=|...|..++++++....+.+..+.....+|||+|+++|..+. ..+|++|.+.
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaIt--kAyyrgaqa~ 96 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAIT--KAYYRGAQAS 96 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHH--HHHhccccce
Confidence 35899999999999999999999999999999999999988888777555666799999999999887 6899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+|||+-+|+.||+....|+..+..... .+|.++|-||+|+.++. +...+.+.+++.+++.+|
T Consensus 97 vLVFSTTDr~SFea~~~w~~kv~~e~~----~IPtV~vqNKIDlveds~~~~~evE~lak~l~~Rly 159 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEATLEWYNKVQKETE----RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLY 159 (246)
T ss_pred EEEEecccHHHHHHHHHHHHHHHHHhc----cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhh
Confidence 999999999999999999999988763 79999999999998866 567888889998888765
No 247
>PLN00023 GTP-binding protein; Provisional
Probab=99.81 E-value=3.6e-19 Score=167.84 Aligned_cols=143 Identities=20% Similarity=0.243 Sum_probs=109.4
Q ss_pred CCCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--ccccee-------------CCeeEEEEEeCCCC
Q 010254 9 SGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFY-------------PDRVPITIIDTPSS 73 (514)
Q Consensus 9 ~~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~-------------~~~~~~~l~Dt~G~ 73 (514)
.+.+....+||+|+|+.|||||||+++|+++.+...+.++.+... ....+. ...+.+.||||+|.
T Consensus 14 ~~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq 93 (334)
T PLN00023 14 NGGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH 93 (334)
T ss_pred ccCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC
Confidence 456677889999999999999999999999987665555444322 112221 23578999999999
Q ss_pred ccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcC-------------CCCcEEEEEecccCcccc--cch
Q 010254 74 VEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLE-------------VKVPVIVVGCKLDLRDEN--QQV 138 (514)
Q Consensus 74 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-------------~~~pvilv~NK~Dl~~~~--~~~ 138 (514)
+.+...+..+++++|++|+|||++++.+++.+.. |+..+.... .++|++||+||+||.... +.+
T Consensus 94 ErfrsL~~~yyr~AdgiILVyDITdr~SFenL~k-Wl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~ 172 (334)
T PLN00023 94 ERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQK-WASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGS 172 (334)
T ss_pred hhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccc
Confidence 9999999999999999999999999999999986 999888652 248999999999997542 121
Q ss_pred --hHhhhhHHHHHHHh
Q 010254 139 --SLEQVMMPIMQQFR 152 (514)
Q Consensus 139 --~~~~~~~~~~~~~~ 152 (514)
...+....++++.+
T Consensus 173 s~~~~e~a~~~A~~~g 188 (334)
T PLN00023 173 SGNLVDAARQWVEKQG 188 (334)
T ss_pred ccccHHHHHHHHHHcC
Confidence 12344566666654
No 248
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=1.1e-18 Score=155.33 Aligned_cols=155 Identities=20% Similarity=0.190 Sum_probs=107.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccch-----------hhHH
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDR-----------GKLG 81 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~-----------~~~~ 81 (514)
.++|+++|++|+|||||+|+|++.... .....++++.. ..+..++..+.+|||||..+.. ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERV--IVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccce--eccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 578999999999999999999997632 22223344422 2344456779999999975431 1123
Q ss_pred HhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc--cCcEEE
Q 010254 82 EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--IETCIE 159 (514)
Q Consensus 82 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~i~ 159 (514)
..+..+|++++|+|++++.+..... +...+... ++|+++|+||+|+... +....+.....+.+.++. ..++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~~--~~~~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR--IAGLILEE--GKALVIVVNKWDLVEK-DSKTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH--HHHHHHhc--CCCEEEEEeccccCCc-cHHHHHHHHHHHHhhcccccCCceEE
Confidence 3568999999999999887765543 55555444 7999999999999765 212233333344444431 237999
Q ss_pred cCccccccceecCCCCChhhHHHHHHHHHH
Q 010254 160 CSALKQIQVKCFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 160 ~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~ 189 (514)
+||+++. |++++++.+.+
T Consensus 155 ~Sa~~~~------------~i~~~~~~l~~ 172 (174)
T cd01895 155 ISALTGQ------------GVDKLFDAIDE 172 (174)
T ss_pred EeccCCC------------CHHHHHHHHHH
Confidence 9999999 99998888765
No 249
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.81 E-value=4.7e-19 Score=181.16 Aligned_cols=159 Identities=17% Similarity=0.180 Sum_probs=115.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccchh-----------h
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRG-----------K 79 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~-----------~ 79 (514)
...++|+++|++|||||||+|+|++.+ ...++..++||.. ..+..++..+.+|||||+.+... .
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~--~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEE--RVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCC--eeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHH
Confidence 345899999999999999999999987 3444556666633 23444567899999999864321 1
Q ss_pred HHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc--cCcE
Q 010254 80 LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--IETC 157 (514)
Q Consensus 80 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~ 157 (514)
...+++.+|++|+|+|++++.+.++.. ++..+.+. ++|+++|+||+|+... ....++....+...+.. ..++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~~~--~~~iiiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~v 321 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR--IAGLILEA--GKALVIVVNKWDLVKD--EKTREEFKKELRRKLPFLDFAPI 321 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH--HHHHHHHc--CCcEEEEEECcccCCC--HHHHHHHHHHHHHhcccCCCCce
Confidence 234689999999999999887776654 66666555 7999999999999732 12222333334444332 1389
Q ss_pred EEcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 158 IECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 158 i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
++|||++|. |++++.+.+.+...
T Consensus 322 i~~SA~~g~------------~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 322 VFISALTGQ------------GVDKLLDAIDEVYE 344 (429)
T ss_pred EEEeCCCCC------------CHHHHHHHHHHHHH
Confidence 999999999 89999888877554
No 250
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.81 E-value=5.5e-19 Score=154.89 Aligned_cols=144 Identities=18% Similarity=0.189 Sum_probs=101.1
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeCCeeEEEEEeCCCCccchh------hHHHhhh--ccCE
Q 010254 21 VCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYPDRVPITIIDTPSSVEDRG------KLGEELR--RADA 89 (514)
Q Consensus 21 ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~--~ad~ 89 (514)
|+|++|||||||+|+|++..+.. ...+++|... .+...+..+.+|||||++.+.. ....++. ++|+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKV---GNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDL 77 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccc---cCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcE
Confidence 58999999999999999876322 2234444322 3344467899999999876543 2344554 9999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccce
Q 010254 90 VVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVK 169 (514)
Q Consensus 90 ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~ 169 (514)
+++|+|++++.... .|...+... ++|+++|+||+|+.+.. .. ......+...++. +++++||+++.
T Consensus 78 vi~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~-~~--~~~~~~~~~~~~~--~~~~iSa~~~~--- 143 (158)
T cd01879 78 IVNVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKR-GI--KIDLDKLSELLGV--PVVPTSARKGE--- 143 (158)
T ss_pred EEEEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhcccc-cc--hhhHHHHHHhhCC--CeEEEEccCCC---
Confidence 99999988754322 255555554 79999999999997651 11 1123345555543 89999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHH
Q 010254 170 CFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 170 ~f~~~l~~~~i~~L~~~i~~~ 190 (514)
|++.+.+.+.+.
T Consensus 144 ---------~~~~l~~~l~~~ 155 (158)
T cd01879 144 ---------GIDELKDAIAEL 155 (158)
T ss_pred ---------CHHHHHHHHHHH
Confidence 999988888764
No 251
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.81 E-value=3.7e-19 Score=155.33 Aligned_cols=142 Identities=18% Similarity=0.198 Sum_probs=98.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchh----hHHHhhhccCEEEEE
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRG----KLGEELRRADAVVLT 93 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~----~~~~~~~~ad~ii~v 93 (514)
+|+++|++|||||||+|+|.+... . . ..+....+... .+|||||...... .+..+++++|++++|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--~-~----~~~~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v 71 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--L-A----RKTQAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYV 71 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--c-C----ccceEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEE
Confidence 799999999999999999887541 1 1 12223333332 2799999743222 223457899999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCC
Q 010254 94 YACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNS 173 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~ 173 (514)
+|+++..++... |+..+ ..++|+++++||+|+.+. . . +....+.++++...++++|||++|.
T Consensus 72 ~d~~~~~s~~~~---~~~~~---~~~~~ii~v~nK~Dl~~~-~---~-~~~~~~~~~~~~~~p~~~~Sa~~g~------- 133 (158)
T PRK15467 72 HGANDPESRLPA---GLLDI---GVSKRQIAVISKTDMPDA-D---V-AATRKLLLETGFEEPIFELNSHDPQ------- 133 (158)
T ss_pred EeCCCcccccCH---HHHhc---cCCCCeEEEEEccccCcc-c---H-HHHHHHHHHcCCCCCEEEEECCCcc-------
Confidence 999987765332 43333 236899999999998643 1 1 2234445555433489999999999
Q ss_pred CCChhhHHHHHHHHHHHhcC
Q 010254 174 PLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 174 ~l~~~~i~~L~~~i~~~~~~ 193 (514)
|+++|++.+.+.+++
T Consensus 134 -----gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 134 -----SVQQLVDYLASLTKQ 148 (158)
T ss_pred -----CHHHHHHHHHHhchh
Confidence 999999999887754
No 252
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.81 E-value=5.6e-19 Score=157.60 Aligned_cols=137 Identities=22% Similarity=0.346 Sum_probs=107.2
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|.++.+...+.++....+. ..+..++......+|||+|++.+.... ...++++|++++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~il 77 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA-VSVTVGGKQYLLGLYDTAGQEDYDRLR--PLSYPMTDVFLI 77 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEeCCCcccccccc--cccCCCCCEEEE
Confidence 48999999999999999999999988777666554443 345555333445699999998888765 567899999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC-ccc
Q 010254 450 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-VLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~-~~~ 513 (514)
|||+++++||+.+. .|+..+.... ++.|+++|+||+|+... .+...+++.+++.+++ +||
T Consensus 78 v~~~~~~~s~~~~~~~~~~~l~~~~----~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 152 (174)
T cd04135 78 CFSVVNPASFQNVKEEWVPELKEYA----PNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYV 152 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEE
Confidence 99999999999996 5777776542 37999999999998643 2445678889988886 443
No 253
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=7.3e-19 Score=173.99 Aligned_cols=158 Identities=18% Similarity=0.176 Sum_probs=113.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeCC-eeEEEEEeCCCCccch-------hhHHHhhhc
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYPD-RVPITIIDTPSSVEDR-------GKLGEELRR 86 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~~-~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 86 (514)
.|+|||.||||||||+|+|++.+. .++..+.||... .+... ...+.++||||+.+.. ......+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~---~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP---KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc---cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 799999999999999999998762 445566666332 23333 3569999999986432 122346889
Q ss_pred cCEEEEEEeCC---CcccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEc
Q 010254 87 ADAVVLTYACD---RPETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIEC 160 (514)
Q Consensus 87 ad~ii~v~d~~---~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (514)
+|++++|+|++ ....++.... |+..+..+. .++|+++|+||+|+... ....+.+..+.+.++...+++++
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~-l~~eL~~~~~~L~~kP~IlVlNKiDl~~~---~el~~~l~~l~~~~~~~~~Vi~I 313 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARI-IINELEKYSPKLAEKPRWLVFNKIDLLDE---EEAEERAKAIVEALGWEGPVYLI 313 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHH-HHHHHHhhhhhhcCCCEEEEEeCCccCCh---HHHHHHHHHHHHHhCCCCCEEEE
Confidence 99999999987 3445555543 777777653 36899999999999754 12223334444443321268999
Q ss_pred CccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 161 SALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 161 Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
||+++. |+++|++.|.+.+++.
T Consensus 314 SA~tg~------------GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 314 SAASGL------------GVKELCWDLMTFIEEN 335 (390)
T ss_pred ECCCCc------------CHHHHHHHHHHHhhhC
Confidence 999999 9999999999988754
No 254
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.80 E-value=8.7e-19 Score=153.35 Aligned_cols=145 Identities=23% Similarity=0.274 Sum_probs=105.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccchhh--------HHHhh
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRGK--------LGEEL 84 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 84 (514)
+++|+++|++|+|||||+|+|.+... +..+..++++.. ..+...+.++.+|||||..+.... ....+
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 78 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDR--AIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAI 78 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCce--EeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence 57999999999999999999999873 223334454422 234455788999999998765432 23467
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccc
Q 010254 85 RRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALK 164 (514)
Q Consensus 85 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 164 (514)
.++|++++|+|++++.+...... +.. ..++|+++|+||+|+.+.... .... ...+++++||++
T Consensus 79 ~~~~~~v~v~d~~~~~~~~~~~~-~~~-----~~~~~vi~v~nK~D~~~~~~~---------~~~~--~~~~~~~~Sa~~ 141 (157)
T cd04164 79 EEADLVLFVIDASRGLDEEDLEI-LEL-----PADKPIIVVLNKSDLLPDSEL---------LSLL--AGKPIIAISAKT 141 (157)
T ss_pred hhCCEEEEEEECCCCCCHHHHHH-HHh-----hcCCCEEEEEEchhcCCcccc---------cccc--CCCceEEEECCC
Confidence 89999999999998777665542 221 237999999999999865111 1111 223899999999
Q ss_pred cccceecCCCCChhhHHHHHHHHHHHh
Q 010254 165 QIQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 165 ~~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
+. |+++|.+.|.+.+
T Consensus 142 ~~------------~v~~l~~~l~~~~ 156 (157)
T cd04164 142 GE------------GLDELKEALLELA 156 (157)
T ss_pred CC------------CHHHHHHHHHHhh
Confidence 99 9999999887643
No 255
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.80 E-value=1e-18 Score=152.96 Aligned_cols=139 Identities=19% Similarity=0.346 Sum_probs=116.8
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|.+..+...+.++.+.++....+...+....+.+||++|.+.+.... ...++.+|++++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~d~ii~ 78 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSIT--PSYYRGAHGAIL 78 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHH--HHHhcCCCEEEE
Confidence 479999999999999999999999988877777877777777776444567799999998888766 578899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCc-ccccchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD-SFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~ 513 (514)
|+|++++++++.+..|+..+..... .+.|+++|+||+|+. ......++.++++++++++++
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (159)
T cd00154 79 VYDITNRESFENLDKWLKELKEYAP---ENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFF 140 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC---CCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEE
Confidence 9999999999999999988877642 269999999999997 334567788888888777765
No 256
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.80 E-value=1.6e-18 Score=153.86 Aligned_cols=140 Identities=19% Similarity=0.260 Sum_probs=111.6
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||++++.++.+...+.++.+.++....+.+.+....+.+||++|++.+.... ...++.+|++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--~~~~~~~d~~ 83 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSIT--QSYYRSANAL 83 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhcCCCEE
Confidence 35899999999999999999999888877766777766777777776344566789999998888765 5788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCcc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVL 512 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~ 512 (514)
++|||++++.+|+.+..|+..+...... ++|+++|+||+|+...+ ......+.+.+....++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~---~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~ 146 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANN---KVITILVGNKIDLAERREVSQQRAEEFSDAQDMYY 146 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECcccccccccCHHHHHHHHHHcCCeE
Confidence 9999999999999999999887665422 69999999999997544 34455666776655544
No 257
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.80 E-value=6.2e-19 Score=157.82 Aligned_cols=149 Identities=23% Similarity=0.230 Sum_probs=98.4
Q ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccc-eeCCeeEEEEEeCCCCccc----------hh
Q 010254 10 GPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPED-FYPDRVPITIIDTPSSVED----------RG 78 (514)
Q Consensus 10 ~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~-~~~~~~~~~l~Dt~G~~~~----------~~ 78 (514)
+.+....++|+|+|++|||||||+|+|++..+...+.. .+++|.... +... ..+.+|||||+... ..
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~-~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSK-TPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccC-CCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHH
Confidence 33446789999999999999999999999864333333 344443322 2222 36999999997432 12
Q ss_pred hHHHhhh---ccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhcc-
Q 010254 79 KLGEELR---RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI- 154 (514)
Q Consensus 79 ~~~~~~~---~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~- 154 (514)
....+++ .+|++++|+|++.+.+..+.. +...+... ++|+++|+||+|+.... ..+...+.+.+.+...
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~--~~~~~~~~--~~pviiv~nK~D~~~~~---~~~~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDLE--MLEWLRER--GIPVLIVLTKADKLKKS---ELNKQLKKIKKALKKDA 162 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECcccCCHH---HHHHHHHHHHHHHhhcc
Confidence 2234454 468999999998766655543 55666655 79999999999997542 1222233333333322
Q ss_pred --CcEEEcCcccccc
Q 010254 155 --ETCIECSALKQIQ 167 (514)
Q Consensus 155 --~~~i~~Sa~~~~~ 167 (514)
.+++++||++|.|
T Consensus 163 ~~~~v~~~Sa~~g~g 177 (179)
T TIGR03598 163 DDPSVQLFSSLKKTG 177 (179)
T ss_pred CCCceEEEECCCCCC
Confidence 2799999999984
No 258
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.80 E-value=3.5e-19 Score=156.95 Aligned_cols=133 Identities=23% Similarity=0.217 Sum_probs=104.1
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 450 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv 450 (514)
+|+++|++|||||||+++|.++.+...+.|+.+... ..+ ..+.....+||++|++.+..++ ..+++++|++++|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i--~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~ii~V 74 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAI--PTQDAIMELLEIGGSQNLRKYW--KRYLSGSQGLIFV 74 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEE--eeCCeEEEEEECCCCcchhHHH--HHHHhhCCEEEEE
Confidence 379999999999999999999988777767766542 223 3345677899999999998877 5789999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccc-----hhhHHHHHHHcCCccc
Q 010254 451 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMA-----IQDSTRVFTFLVMVLY 513 (514)
Q Consensus 451 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~ 513 (514)
||+++..+|.....|+..+.... +++|+++|+||.|+...+.. ..++.+++++.++.+|
T Consensus 75 ~D~t~~~s~~~~~~~l~~~~~~~----~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 138 (164)
T cd04162 75 VDSADSERLPLARQELHQLLQHP----PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQ 138 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHhCC----CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEE
Confidence 99999999999999988876543 27999999999998764421 1245666666666554
No 259
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.79 E-value=1.8e-18 Score=156.06 Aligned_cols=162 Identities=23% Similarity=0.262 Sum_probs=114.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC---------------CCCCCCccc---cccee--CCeeEEEEEeCCCCc
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANV---------------PPVLPPTRL---PEDFY--PDRVPITIIDTPSSV 74 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~---------------~~~~~~tt~---~~~~~--~~~~~~~l~Dt~G~~ 74 (514)
+-.+|+|+|+.++|||||+++|+........ .....+.|+ ...+. ..+..+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4689999999999999999999975421110 000112221 12333 557899999999999
Q ss_pred cchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc-
Q 010254 75 EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE- 153 (514)
Q Consensus 75 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~- 153 (514)
++...+...+..+|++|+|+|+.++...+..+ .+..+... ++|+++|+||+|+.........++....+.+.++.
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~--~l~~~~~~--~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEE--HLKILREL--GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHH--HHHHHHHT--T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeeccccccccccc--cccccccc--ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 98888888899999999999998776554443 66666666 89999999999998431112222222234344432
Q ss_pred ---cCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 154 ---IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 154 ---~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
..+++++||++|. |++.|++.|.+.+|
T Consensus 158 ~~~~~~vi~~Sa~~g~------------gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 158 GEEIVPVIPISALTGD------------GIDELLEALVELLP 187 (188)
T ss_dssp TTSTEEEEEEBTTTTB------------THHHHHHHHHHHS-
T ss_pred ccccceEEEEecCCCC------------CHHHHHHHHHHhCc
Confidence 2379999999999 99999999999887
No 260
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.79 E-value=1.9e-18 Score=157.30 Aligned_cols=166 Identities=21% Similarity=0.232 Sum_probs=109.2
Q ss_pred CCCCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCcc----------ch
Q 010254 8 NSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVE----------DR 77 (514)
Q Consensus 8 ~~~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~----------~~ 77 (514)
.++......++|+|+|++|||||||+|+|++.++...+.+. +++|....+...+..+.||||||+.. +.
T Consensus 16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~-~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~ 94 (196)
T PRK00454 16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKT-PGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQ 94 (196)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC-CCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHH
Confidence 34445567799999999999999999999998653444433 34443333322247899999999642 22
Q ss_pred hhHHHhhhc---cCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc-
Q 010254 78 GKLGEELRR---ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE- 153 (514)
Q Consensus 78 ~~~~~~~~~---ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~- 153 (514)
.....+++. ++++++|+|.+.+.+.... .+...+... ++|+++++||+|+.+.... +.....+...+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~~--~~~~iiv~nK~Dl~~~~~~---~~~~~~i~~~l~~~ 167 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKEY--GIPVLIVLTKADKLKKGER---KKQLKKVRKALKFG 167 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHHc--CCcEEEEEECcccCCHHHH---HHHHHHHHHHHHhc
Confidence 223344443 4688899998776554332 244555554 7899999999999764211 1111222222221
Q ss_pred cCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 154 IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 154 ~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
..+++++||+++. |++++.+.|.+.+.+
T Consensus 168 ~~~~~~~Sa~~~~------------gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 168 DDEVILFSSLKKQ------------GIDELRAAIAKWLAE 195 (196)
T ss_pred CCceEEEEcCCCC------------CHHHHHHHHHHHhcC
Confidence 2379999999999 999999998877653
No 261
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=2e-18 Score=171.60 Aligned_cols=153 Identities=20% Similarity=0.263 Sum_probs=110.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccc---eeCC-eeEEEEEeCCCCccch----hhHH---Hhhhc
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPED---FYPD-RVPITIIDTPSSVEDR----GKLG---EELRR 86 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~---~~~~-~~~~~l~Dt~G~~~~~----~~~~---~~~~~ 86 (514)
.|+|+|.||||||||+|+|++.+. .+. ..+.||.... +... +..+.+|||||+.+.. .... ..+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~--kIa-~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier 236 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP--KIA-NYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIER 236 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC--ccc-cCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence 899999999999999999998773 332 3455553322 2222 6789999999985422 1222 33667
Q ss_pred cCEEEEEEeCCCc---ccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEc
Q 010254 87 ADAVVLTYACDRP---ETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIEC 160 (514)
Q Consensus 87 ad~ii~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (514)
++++++|+|+++. .++++... |...+..+. .++|++||+||+|+... .+..+.+.+.++ .+++++
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~-i~~EL~~y~~~L~~kP~IVV~NK~DL~~~------~e~l~~l~~~l~--~~i~~i 307 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEK-INKELKLYNPRLLERPQIVVANKMDLPEA------EENLEEFKEKLG--PKVFPI 307 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHH-HHHHHhhhchhccCCcEEEEEeCCCCcCC------HHHHHHHHHHhC--CcEEEE
Confidence 9999999999764 55666654 878887754 36899999999998433 223344555554 279999
Q ss_pred CccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 161 SALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 161 Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
||+++. |+++|++.|.+.+...
T Consensus 308 SA~tge------------GI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 308 SALTGQ------------GLDELLYAVAELLEET 329 (424)
T ss_pred eCCCCC------------CHHHHHHHHHHHHHhC
Confidence 999999 9999999998876543
No 262
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.79 E-value=2.6e-18 Score=150.36 Aligned_cols=156 Identities=21% Similarity=0.267 Sum_probs=110.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCe--eEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDR--VPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
.+||+++|.+|+|||||+|+|++..+.....+..........+..++ +.+.+|||||+..+........+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999884333322111111222233334 7899999999988888778888999999999
Q ss_pred EeCCCc-ccHHHHHHHHHHHHHhcCC-CCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceec
Q 010254 94 YACDRP-ETLDELSTFWLPELRRLEV-KVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCF 171 (514)
Q Consensus 94 ~d~~~~-~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f 171 (514)
+|.... .++......|...+..... +.|+++|+||+|+.... ...........++.. +++++||+++.
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~-~~~~~sa~~~~----- 150 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK----LKTHVAFLFAKLNGE-PIIPLSAETGK----- 150 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch----hhHHHHHHHhhccCC-ceEEeecCCCC-----
Confidence 998876 5666555346666655543 78999999999997641 122223333333332 79999999999
Q ss_pred CCCCChhhHHHHHHHHH
Q 010254 172 NSPLQPSEIVGVKRVVQ 188 (514)
Q Consensus 172 ~~~l~~~~i~~L~~~i~ 188 (514)
|++++.+.|.
T Consensus 151 -------gv~~~~~~l~ 160 (161)
T TIGR00231 151 -------NIDSAFKIVE 160 (161)
T ss_pred -------CHHHHHHHhh
Confidence 8888887763
No 263
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=1.5e-18 Score=177.64 Aligned_cols=157 Identities=21% Similarity=0.219 Sum_probs=114.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccchh-----------h
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRG-----------K 79 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~-----------~ 79 (514)
...++|+|+|+||||||||+|+|++.+ ...++..+++|.. ..+..++..+.+|||||+..... .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~--~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEE--RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCC--ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 357999999999999999999999987 4555556677733 34445677899999999753221 1
Q ss_pred HHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc--cCcE
Q 010254 80 LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--IETC 157 (514)
Q Consensus 80 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~ 157 (514)
...+++.+|++|+|+|++++.+.++.. +...+... ++|+++|+||+|+.+.. ..++....+...+.. ..++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~--i~~~~~~~--~~~~ivv~NK~Dl~~~~---~~~~~~~~~~~~l~~~~~~~i 321 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR--IAGLALEA--GRALVIVVNKWDLVDEK---TMEEFKKELRRRLPFLDYAPI 321 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCcEEEEEECccCCCHH---HHHHHHHHHHHhcccccCCCE
Confidence 234688999999999999887776654 66666655 79999999999997541 122222333333321 2389
Q ss_pred EEcCccccccceecCCCCChhhHHHHHHHHHHHh
Q 010254 158 IECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 158 i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
+++||++|. |++++.+.+.+..
T Consensus 322 ~~~SA~~~~------------gv~~l~~~i~~~~ 343 (435)
T PRK00093 322 VFISALTGQ------------GVDKLLEAIDEAY 343 (435)
T ss_pred EEEeCCCCC------------CHHHHHHHHHHHH
Confidence 999999999 8999888887654
No 264
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.79 E-value=2.8e-18 Score=151.41 Aligned_cols=139 Identities=21% Similarity=0.300 Sum_probs=111.8
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++++...+...+.++.+..+. +....+++...+.+||++|++.+.... ...++.+|++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~--~~~~~~~~~~i~ 77 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEDVQLNILDTAGQEDYAAIR--DNYHRSGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEE-EEEEECCEEEEEEEEECCChhhhhHHH--HHHhhcCCEEEE
Confidence 48999999999999999999999988777666554443 444555345667899999998888776 578899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
|||++++.+|..+..|+..+...... .++|+++|+||+|+...+ ....+..+++++++++++
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T cd04139 78 VFSITDMESFTATAEFREQILRVKDD--DNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYV 140 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEE
Confidence 99999999999999999888775322 279999999999997633 456667778888887765
No 265
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.79 E-value=4e-18 Score=150.64 Aligned_cols=155 Identities=22% Similarity=0.273 Sum_probs=106.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc---cccceeCCeeEEEEEeCCCCccchhh--------HHHh
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR---LPEDFYPDRVPITIIDTPSSVEDRGK--------LGEE 83 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt---~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~ 83 (514)
...+|+++|++|+|||||+|+|++.++.. ....+.++ ....+...+..+.+|||||....... ....
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISI--VSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA 79 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEe--ccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence 46889999999999999999999987422 22122222 22234455678999999998654432 2345
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcc
Q 010254 84 LRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (514)
Q Consensus 84 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 163 (514)
+..+|++++|+|++++.+ .....+...+... +.|+++|+||+|+... .....+....+..... ..+++++|++
T Consensus 80 ~~~~d~i~~v~d~~~~~~--~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~~s~~ 152 (168)
T cd04163 80 LKDVDLVLFVVDASEPIG--EGDEFILELLKKS--KTPVILVLNKIDLVKD--KEDLLPLLEKLKELGP-FAEIFPISAL 152 (168)
T ss_pred HHhCCEEEEEEECCCccC--chHHHHHHHHHHh--CCCEEEEEEchhcccc--HHHHHHHHHHHHhccC-CCceEEEEec
Confidence 889999999999987632 2222355666655 7899999999999743 1222223333433332 2388999999
Q ss_pred ccccceecCCCCChhhHHHHHHHHHHH
Q 010254 164 KQIQVKCFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 164 ~~~~~~~f~~~l~~~~i~~L~~~i~~~ 190 (514)
++. |++++.+.|.+.
T Consensus 153 ~~~------------~~~~l~~~l~~~ 167 (168)
T cd04163 153 KGE------------NVDELLEEIVKY 167 (168)
T ss_pred cCC------------ChHHHHHHHHhh
Confidence 999 999999888764
No 266
>PRK11058 GTPase HflX; Provisional
Probab=99.79 E-value=2.9e-18 Score=171.75 Aligned_cols=153 Identities=14% Similarity=0.115 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeCC-eeEEEEEeCCCCccc--hhhH------HHhh
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYPD-RVPITIIDTPSSVED--RGKL------GEEL 84 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~~-~~~~~l~Dt~G~~~~--~~~~------~~~~ 84 (514)
.+|+|+|.||||||||+|+|++.++. +...+++|+.. .+... ..++.+|||||+.+. .+.+ ...+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~---v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~ 274 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY---AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQET 274 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee---eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHh
Confidence 58999999999999999999997742 22233334222 22222 347899999998432 2222 3347
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcc
Q 010254 85 RRADAVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (514)
Q Consensus 85 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 163 (514)
++||++++|+|++++.+.+.+.. |...+.... .++|+++|+||+|+... ... .... ... ....++++||+
T Consensus 275 ~~ADlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~-~~~----~~~~--~~~-~~~~~v~ISAk 345 (426)
T PRK11058 275 RQATLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDD-FEP----RIDR--DEE-NKPIRVWLSAQ 345 (426)
T ss_pred hcCCEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCc-hhH----HHHH--Hhc-CCCceEEEeCC
Confidence 89999999999999887776643 444444432 37999999999999653 110 0110 111 12135899999
Q ss_pred ccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 164 KQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 164 ~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
+|. |+++|++.|.+.+..
T Consensus 346 tG~------------GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 346 TGA------------GIPLLFQALTERLSG 363 (426)
T ss_pred CCC------------CHHHHHHHHHHHhhh
Confidence 999 999999999988754
No 267
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=2.5e-18 Score=172.72 Aligned_cols=157 Identities=21% Similarity=0.267 Sum_probs=106.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccchh-------hHHHhhh
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRG-------KLGEELR 85 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~ 85 (514)
-..|+|||.||||||||||+|++.+. .+ ...+.||+. ..+...+.++.+|||||+..... .....+.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akp--kI-adypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKP--KI-ADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCc--cc-cccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 36899999999999999999998763 33 345556633 23445567899999999853221 1233578
Q ss_pred ccCEEEEEEeCCCc----ccHHHHHHHHHHHHHhcC------------CCCcEEEEEecccCcccccchhHhhhhHHHHH
Q 010254 86 RADAVVLTYACDRP----ETLDELSTFWLPELRRLE------------VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQ 149 (514)
Q Consensus 86 ~ad~ii~v~d~~~~----~s~~~~~~~~~~~l~~~~------------~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~ 149 (514)
++|++|+|+|+++. ..++++.. |...+..+. .++|+|||+||+|+.+. + ...+.+.....
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~-i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da-~--el~e~l~~~l~ 311 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDA-LEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA-R--ELAEFVRPELE 311 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHH-HHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh-H--HHHHHHHHHHH
Confidence 89999999999752 34444442 444444332 26899999999999754 1 11111122222
Q ss_pred HHhccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 150 QFREIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 150 ~~~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
..+ .++++|||+++. |+++|+..|.+.+..
T Consensus 312 ~~g--~~Vf~ISA~tge------------GLdEL~~~L~ell~~ 341 (500)
T PRK12296 312 ARG--WPVFEVSAASRE------------GLRELSFALAELVEE 341 (500)
T ss_pred HcC--CeEEEEECCCCC------------CHHHHHHHHHHHHHh
Confidence 222 279999999999 999999998877653
No 268
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.78 E-value=8.6e-19 Score=155.86 Aligned_cols=161 Identities=18% Similarity=0.260 Sum_probs=116.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
.+.+||+++|.+|+|||||+++|..+.... +.++.+ .. ...+..+++.+.+||.+|.......+..++.++|++|||
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g-~~-~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfV 88 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG-FN-IEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFV 88 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS-EE-EEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc-cc-cceeeeCcEEEEEEeccccccccccceeeccccceeEEE
Confidence 678999999999999999999999876422 221111 11 123345688999999999998889999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHh--ccCcEEEcCcccccccee
Q 010254 94 YACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR--EIETCIECSALKQIQVKC 170 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~Sa~~~~~~~~ 170 (514)
+|.++...+.+....+...+... ..++|++|++||+|+.+........+... ...+. ....++.|||.+|.
T Consensus 89 vDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~--l~~l~~~~~~~v~~~sa~~g~---- 162 (175)
T PF00025_consen 89 VDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLG--LEKLKNKRPWSVFSCSAKTGE---- 162 (175)
T ss_dssp EETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTT--GGGTTSSSCEEEEEEBTTTTB----
T ss_pred EecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhh--hhhcccCCceEEEeeeccCCc----
Confidence 99999888888776555555532 24799999999999876521111111100 01111 11168999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHh
Q 010254 171 FNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~ 191 (514)
|+.+..++|.+++
T Consensus 163 --------Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 163 --------GVDEGLEWLIEQI 175 (175)
T ss_dssp --------THHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHhcC
Confidence 9999999987753
No 269
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.78 E-value=3.3e-18 Score=151.30 Aligned_cols=127 Identities=20% Similarity=0.191 Sum_probs=97.8
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|..+.+.. +.|+.+.++. .+.. ....+.+|||+|++.+..++ ..+++++|++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~--~~~~~~a~~i 80 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLW--RHYYTGTQGL 80 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHH--HHHhccCCEE
Confidence 34899999999999999999999887754 4466665443 3332 34667899999999998776 5788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHH
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRV 504 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 504 (514)
|+|||+++..+|+.+..|+..+...... +++|++||+||+|+.. .+..++.+++
T Consensus 81 i~v~D~t~~~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~~~~~i~~~ 134 (168)
T cd04149 81 IFVVDSADRDRIDEARQELHRIINDREM--RDALLLVFANKQDLPD-AMKPHEIQEK 134 (168)
T ss_pred EEEEeCCchhhHHHHHHHHHHHhcCHhh--cCCcEEEEEECcCCcc-CCCHHHHHHH
Confidence 9999999999999998888776543211 2689999999999865 2334444444
No 270
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.78 E-value=4.9e-18 Score=152.38 Aligned_cols=139 Identities=15% Similarity=0.239 Sum_probs=108.9
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
.||+++|++|||||||+++|.+..+...+.++....+ ...+...+......+|||+|.+++..+. ...+..+|++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~~~~i~ 78 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILP--QKYSIGIHGYIL 78 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHH--HHHHhhCCEEEE
Confidence 5899999999999999999999988776766555444 3555555333455799999998887665 567889999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
|||+++..+|+.+..|+..+...... .+.|+++|+||+|+...+ ....+...+++.++.+++
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (180)
T cd04137 79 VYSVTSRKSFEVVKVIYDKILDMLGK--ESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFL 141 (180)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEE
Confidence 99999999999999998887665322 268999999999997644 345566778888776654
No 271
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.78 E-value=3.3e-18 Score=152.86 Aligned_cols=150 Identities=23% Similarity=0.280 Sum_probs=99.6
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCC-eeEEEEEeCCCCccch----h---hHHHhhhccCE
Q 010254 21 VCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPD-RVPITIIDTPSSVEDR----G---KLGEELRRADA 89 (514)
Q Consensus 21 ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~-~~~~~l~Dt~G~~~~~----~---~~~~~~~~ad~ 89 (514)
|+|++|||||||+|+|++.++ . ....+.+|.. ..+... +.++.+|||||+.... . .....++.+|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~--~-~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP--K-VANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc--c-ccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCE
Confidence 589999999999999999874 1 2223333422 223345 7889999999974321 1 22345788999
Q ss_pred EEEEEeCCCc------ccHHHHHHHHHHHHHhcC--------CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccC
Q 010254 90 VVLTYACDRP------ETLDELSTFWLPELRRLE--------VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIE 155 (514)
Q Consensus 90 ii~v~d~~~~------~s~~~~~~~~~~~l~~~~--------~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
+++|+|++++ .++..... |...+.... .++|+++|+||+|+.... ...... .. ........
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~~~-~~--~~~~~~~~ 152 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEI-LNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE-ELEEEL-VR--ELALEEGA 152 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHH-HHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh-HHHHHH-HH--HHhcCCCC
Confidence 9999999887 45555543 555554321 279999999999997651 111110 01 11111223
Q ss_pred cEEEcCccccccceecCCCCChhhHHHHHHHHHHH
Q 010254 156 TCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 156 ~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~ 190 (514)
+++++||+++. |++++.+.+...
T Consensus 153 ~~~~~Sa~~~~------------gl~~l~~~l~~~ 175 (176)
T cd01881 153 EVVPISAKTEE------------GLDELIRAIYEL 175 (176)
T ss_pred CEEEEehhhhc------------CHHHHHHHHHhh
Confidence 79999999999 999999887653
No 272
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.78 E-value=6.8e-18 Score=147.97 Aligned_cols=115 Identities=21% Similarity=0.210 Sum_probs=92.4
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|.+|||||||++++..+.+.. +.|+.+... ..+.. ....+.+||++|++++..++ ..+++++|++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~--~~~~~--~~~~~~l~D~~G~~~~~~~~--~~~~~~ad~~i~ 73 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLW--RHYFQNTQGLIF 73 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEE--CCEEEEEEECCCCHhHHHHH--HHHhcCCCEEEE
Confidence 489999999999999999998888863 556666543 33333 34667799999999988877 578899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
|||++++.+|+.+..|+..+...... .+.|++||+||.|+..
T Consensus 74 v~D~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~ 115 (159)
T cd04150 74 VVDSNDRERIGEAREELQRMLNEDEL--RDAVLLVFANKQDLPN 115 (159)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhcHHh--cCCCEEEEEECCCCCC
Confidence 99999999999999888776543211 1589999999999965
No 273
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.77 E-value=8e-18 Score=150.26 Aligned_cols=134 Identities=19% Similarity=0.267 Sum_probs=105.7
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
.||+++|++|||||||+++|.++.+...+.++.+..+. ..+.+.+....+.+|||+|++.+..+. ...++++|++++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~i~ 78 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLR--PLSYPDTDVILM 78 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhcc--ccccCCCCEEEE
Confidence 48999999999999999999999998877777765554 345555344456799999999888765 467899999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-------------cchhhHHHHHHHcCC
Q 010254 450 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-------------MAIQDSTRVFTFLVM 510 (514)
Q Consensus 450 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~ 510 (514)
|||+++++||+.+. .|+..+.... ++.|+++|+||+|+.... +...+++++++.++.
T Consensus 79 v~~~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~ 149 (175)
T cd01870 79 CFSIDSPDSLENIPEKWTPEVKHFC----PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGA 149 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCC
Confidence 99999999999885 5777776543 279999999999986421 234567778877664
No 274
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.77 E-value=6.8e-18 Score=148.19 Aligned_cols=138 Identities=17% Similarity=0.241 Sum_probs=110.6
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 450 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv 450 (514)
||+++|++|||||||+++|++..+...+.++.. +.........+....+.+||++|.+.+.... ...++.+|++++|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~~~~i~v 77 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMR--DLYIRQGDGFILV 77 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHH--HHHHhcCCEEEEE
Confidence 589999999999999999999888777766555 4444555555334556799999998887766 5678899999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 451 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 451 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
||++++++++.+..|...+...... .+.|+++|+||+|+...+ ...+++.+++++++++++
T Consensus 78 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 139 (160)
T cd00876 78 YSITDRESFEEIKGYREQILRVKDD--EDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFI 139 (160)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCC--CCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEE
Confidence 9999999999999998887765432 269999999999998743 566788888888876654
No 275
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.77 E-value=7.1e-18 Score=155.68 Aligned_cols=140 Identities=15% Similarity=0.180 Sum_probs=113.8
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+||+++|++|||||||+++++.+.+...+.++.+.++....+...++...+.+|||+|++.+..+. ..+++.+++
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~--~~~~~~~~~ 84 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR--DGYYIKGQC 84 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh--HHHhccCCE
Confidence 455899999999999999999999988888888888877776666666566777799999998887765 567789999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||++++.||..+..|+..+.... ++.|+++++||+|+....+. .+..++++..++.|+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~i~lv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~ 146 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVC----ENIPIVLVGNKVDVKDRQVK-ARQITFHRKKNLQYY 146 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECccCccccCC-HHHHHHHHHcCCEEE
Confidence 999999999999999999998887653 27999999999998653332 233457777776654
No 276
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.77 E-value=7.8e-18 Score=150.05 Aligned_cols=116 Identities=21% Similarity=0.182 Sum_probs=93.1
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.+||+++|++|||||||+++|..+++.. +.||.+.++. .+.. ....+.+||++|++.+..++ ..+++++|++|
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~--~~~~~~ad~ii 85 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESVT-TIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLW--RHYYTNTQGLI 85 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccccceE--EEEE--CCEEEEEEECCCChhhHHHH--HHHhCCCCEEE
Confidence 4899999999999999999998777743 4466664443 3333 34667899999999998877 57789999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
+|||++++++++....|+..+...... ++.|++||+||+|+..
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~--~~~piilv~NK~Dl~~ 128 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDEL--RDAVILVFANKQDLPD 128 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhh--cCCcEEEEEeCcCccc
Confidence 999999999999999888877543211 2689999999999875
No 277
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.77 E-value=4.2e-19 Score=147.49 Aligned_cols=150 Identities=17% Similarity=0.273 Sum_probs=125.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
..-+|++|+|..+|||||+|.+++.+-|...+..+++.-- ....+..+.++..+|||+|++++.....+|+++|.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 4569999999999999999999999888776665444322 44455667888899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccc
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~ 168 (514)
+||+-+++.+|+.... |...+.+....+|.++|-||+|+.++ ..+. ...++.+++.+.. ..+.+|++...|+
T Consensus 98 LVFSTTDr~SFea~~~-w~~kv~~e~~~IPtV~vqNKIDlved-s~~~-~~evE~lak~l~~--RlyRtSvked~NV 169 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLE-WYNKVQKETERIPTVFVQNKIDLVED-SQMD-KGEVEGLAKKLHK--RLYRTSVKEDFNV 169 (246)
T ss_pred EEEecccHHHHHHHHH-HHHHHHHHhccCCeEEeeccchhhHh-hhcc-hHHHHHHHHHhhh--hhhhhhhhhhhhh
Confidence 9999999999999886 99999988789999999999999987 2232 2355777777765 7899999999855
No 278
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.77 E-value=1.8e-18 Score=143.83 Aligned_cols=113 Identities=35% Similarity=0.534 Sum_probs=84.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFP-ANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~-~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
||+|+|++|||||||+++|++..+. ........+.+.. .........+.+||++|.+.+.......+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999999865 1222222222322 22334455699999999988777767779999999999
Q ss_pred EeCCCcccHHHHHHH--HHHHHHhcCCCCcEEEEEeccc
Q 010254 94 YACDRPETLDELSTF--WLPELRRLEVKVPVIVVGCKLD 130 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~--~~~~l~~~~~~~pvilv~NK~D 130 (514)
||++++.+++.+... |+..+++..++.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999999887542 6777776566899999999998
No 279
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.77 E-value=3.8e-18 Score=183.28 Aligned_cols=158 Identities=18% Similarity=0.171 Sum_probs=113.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeCCeeEEEEEeCCCCccch----------h-hH
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYPDRVPITIIDTPSSVEDR----------G-KL 80 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~~~~~~~l~Dt~G~~~~~----------~-~~ 80 (514)
..++|+|+|+||||||||+|+|++.+ ...++..++||... .+..++.++.+|||||+.+.. . ..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~--~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEE--RAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc--ccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHH
Confidence 45899999999999999999999987 34445566666332 344556778999999975211 1 11
Q ss_pred HHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc--cCcEE
Q 010254 81 GEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--IETCI 158 (514)
Q Consensus 81 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~i 158 (514)
..+++.+|++++|+|++++.+.++.. +...+... ++|+++|+||+|+.+... .+.....+...+.. ..+++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~--i~~~~~~~--~~piIiV~NK~DL~~~~~---~~~~~~~~~~~l~~~~~~~ii 599 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK--VMSMAVDA--GRALVLVFNKWDLMDEFR---RQRLERLWKTEFDRVTWARRV 599 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEEchhcCChhH---HHHHHHHHHHhccCCCCCCEE
Confidence 34578999999999999988887765 56666554 799999999999976411 11111122222221 23779
Q ss_pred EcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 159 ECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 159 ~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
++||++|. |+++|++.+.+.++.
T Consensus 600 ~iSAktg~------------gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 600 NLSAKTGW------------HTNRLAPAMQEALES 622 (712)
T ss_pred EEECCCCC------------CHHHHHHHHHHHHHH
Confidence 99999999 999999999887664
No 280
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.77 E-value=9e-18 Score=150.25 Aligned_cols=130 Identities=19% Similarity=0.195 Sum_probs=99.6
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|..+++.. +.||.+... ..+.. ....+.+||++|++++..++ ..+++++|++
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~--~~~~~--~~~~~~i~D~~Gq~~~~~~~--~~~~~~a~~i 88 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLW--RHYFQNTQGL 88 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeE--EEEEE--CCEEEEEEECCCCHHHHHHH--HHHhccCCEE
Confidence 34899999999999999999999888763 446666433 33443 34677899999999998887 5788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCC
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM 510 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 510 (514)
|+|||++++++++.+..++..+..... .++.|++||+||.|+... . ...++++.+++
T Consensus 89 I~V~D~s~~~s~~~~~~~l~~~l~~~~--~~~~piilv~NK~Dl~~~-~---~~~~~~~~l~l 145 (181)
T PLN00223 89 IFVVDSNDRDRVVEARDELHRMLNEDE--LRDAVLLVFANKQDLPNA-M---NAAEITDKLGL 145 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhcCHh--hCCCCEEEEEECCCCCCC-C---CHHHHHHHhCc
Confidence 999999999999998888777654321 126999999999998763 2 23445555554
No 281
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.77 E-value=8.8e-18 Score=155.77 Aligned_cols=165 Identities=29% Similarity=0.426 Sum_probs=119.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccccee--CCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFY--PDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
+..+||+++|++|||||||+++|.+..+...+.++...-....... ...+.+.+|||+|++++...+..++..+++++
T Consensus 3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l 82 (219)
T COG1100 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL 82 (219)
T ss_pred cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence 3449999999999999999999999998766554333222222222 22788999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCC-CCcEEEEEecccCccccc-----------chhHhhhhHHHHHHHh-ccCcEE
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLEV-KVPVIVVGCKLDLRDENQ-----------QVSLEQVMMPIMQQFR-EIETCI 158 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~i 158 (514)
+|+|.+...++.+....|.+.+....+ ..|+++|+||+|+..... ....... ........ ....++
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 161 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVL-APKAVLPEVANPALL 161 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhh-HhHHhhhhhccccee
Confidence 999999977777777779999988763 699999999999987621 1111111 11111111 111389
Q ss_pred EcCcc--ccccceecCCCCChhhHHHHHHHHHHHh
Q 010254 159 ECSAL--KQIQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 159 ~~Sa~--~~~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
++||+ ++. ++..+...+...+
T Consensus 162 ~~s~~~~~~~------------~v~~~~~~~~~~~ 184 (219)
T COG1100 162 ETSAKSLTGP------------NVNELFKELLRKL 184 (219)
T ss_pred EeecccCCCc------------CHHHHHHHHHHHH
Confidence 99999 888 6666666665544
No 282
>PRK04213 GTP-binding protein; Provisional
Probab=99.77 E-value=3.9e-18 Score=155.86 Aligned_cols=155 Identities=20% Similarity=0.213 Sum_probs=98.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc-ceeCCeeEEEEEeCCCCc-----------cchhhHHH
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE-DFYPDRVPITIIDTPSSV-----------EDRGKLGE 82 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~-~~~~~~~~~~l~Dt~G~~-----------~~~~~~~~ 82 (514)
..++|+|+|++|||||||+|+|.+..+.. ...+++|... .+..+ .+.+|||||.. .+...+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~---~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRV---GKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcc---CCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 45899999999999999999999887432 2234555332 22222 68999999952 22223333
Q ss_pred hh----hccCEEEEEEeCCCcccHH---------HHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHH
Q 010254 83 EL----RRADAVVLTYACDRPETLD---------ELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQ 149 (514)
Q Consensus 83 ~~----~~ad~ii~v~d~~~~~s~~---------~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~ 149 (514)
++ ..++++++|+|.+....+. .....+...+... ++|+++|+||+|+... + ++....+.+
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~p~iiv~NK~Dl~~~-~----~~~~~~~~~ 155 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL--GIPPIVAVNKMDKIKN-R----DEVLDEIAE 155 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc--CCCeEEEEECccccCc-H----HHHHHHHHH
Confidence 33 3568899999976432210 0111134444443 7999999999999765 1 223344555
Q ss_pred HHhcc-------CcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 150 QFREI-------ETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 150 ~~~~~-------~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
.++.. .++++|||++| |++++.+.|.+.++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~SA~~g-------------gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 156 RLGLYPPWRQWQDIIAPISAKKG-------------GIEELKEAIRKRLHEA 194 (201)
T ss_pred HhcCCccccccCCcEEEEecccC-------------CHHHHHHHHHHhhcCc
Confidence 55421 15899999999 5667778887776543
No 283
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.77 E-value=6.2e-18 Score=150.32 Aligned_cols=137 Identities=20% Similarity=0.279 Sum_probs=105.2
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|++..+...+.++....+. .....++....+.+||++|++.+.... ...++.+|++++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~D~~g~~~~~~~~--~~~~~~~~~~i~ 77 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYS-ATVTVDGKQVNLGLWDTAGQEEYDRLR--PLSYPNTDVFLI 77 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEeCCCcccccccc--hhhcCCCCEEEE
Confidence 58999999999999999999999986666555544333 344455455667799999998876554 456789999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc------------chhhHHHHHHHcCC-ccc
Q 010254 450 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM------------AIQDSTRVFTFLVM-VLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------------~~~~~~~~~~~~~~-~~~ 513 (514)
|||++++.+|.... .|+..+.... .+.|+++|+||+|+..... ...++.+++..+++ +|+
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 151 (171)
T cd00157 78 CFSVDSPSSFENVKTKWIPEIRHYC----PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYM 151 (171)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC----CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEE
Confidence 99999999998875 4777666554 2699999999999876542 35667778888876 543
No 284
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.76 E-value=1.4e-17 Score=149.27 Aligned_cols=117 Identities=21% Similarity=0.195 Sum_probs=93.3
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||++++..+.+.. +.||.+..+ ..+.. ....+.+|||+|++.+..++ ..+++++|++
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~--~~~~~--~~~~~~l~D~~G~~~~~~~~--~~~~~~ad~i 88 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV--ETVEY--KNLKFTMWDVGGQDKLRPLW--RHYYQNTNGL 88 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce--EEEEE--CCEEEEEEECCCCHhHHHHH--HHHhcCCCEE
Confidence 34899999999999999999998888764 446666444 33433 34567799999999988876 5788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
|+|||++++++|+....++..+...... .+.|++||+||.|+..
T Consensus 89 I~v~D~t~~~s~~~~~~~l~~~~~~~~~--~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 89 IFVVDSNDRERIGDAREELERMLSEDEL--RDAVLLVFANKQDLPN 132 (182)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhCHhh--cCCCEEEEEeCCCCCC
Confidence 9999999999999998887776543211 2689999999999865
No 285
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.76 E-value=8.7e-18 Score=152.44 Aligned_cols=167 Identities=20% Similarity=0.233 Sum_probs=119.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc---cccceeCCeeEEEEEeCCCCccchh------------
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR---LPEDFYPDRVPITIIDTPSSVEDRG------------ 78 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt---~~~~~~~~~~~~~l~Dt~G~~~~~~------------ 78 (514)
.+-++|+|+|.||||||||.|.++|.+... ++....|| +-..+..+...+.++||||.-....
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~--vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSA--VSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCcccc--ccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 456999999999999999999999999533 33333444 5556778889999999999853221
Q ss_pred hHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccc----------hhHhhhhHHHH
Q 010254 79 KLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQ----------VSLEQVMMPIM 148 (514)
Q Consensus 79 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~----------~~~~~~~~~~~ 148 (514)
....++..||++++|+|+++........ ++..++.+. +.|-|+|.||+|.....+. -.......++.
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~--vl~~l~~ys-~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPR--VLHMLEEYS-KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChH--HHHHHHHHh-cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 1245688999999999998754443333 566666653 7899999999997654210 00011112233
Q ss_pred HHHhc---------------cCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCcccC
Q 010254 149 QQFRE---------------IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREGVNE 197 (514)
Q Consensus 149 ~~~~~---------------~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~~~ 197 (514)
+.+.. ++.+|.+||++|. |+++|++.+..+.+.++.+
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~------------GikdlkqyLmsqa~~gpW~ 276 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGE------------GIKDLKQYLMSQAPPGPWK 276 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEeccccc------------CHHHHHHHHHhcCCCCCCC
Confidence 33321 3358999999999 9999999999999877654
No 286
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.76 E-value=1e-17 Score=152.49 Aligned_cols=118 Identities=22% Similarity=0.263 Sum_probs=96.6
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 450 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv 450 (514)
||+++|++|||||||+++|++..+...+.++.. .+....+.+.+....+.+||++|.+.+..+. ..+++.+|++|+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--~~~~~~ad~vilv 77 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMR--KLSIQNSDAFALV 77 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHH--HHHhhcCCEEEEE
Confidence 689999999999999999999998877655554 3444556666334566799999998888765 4678999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 451 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 451 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
||++++.+|+.+..|+..+...... .++|+++|+||+|+..
T Consensus 78 ~d~~~~~s~~~~~~~~~~i~~~~~~--~~~piilv~NK~Dl~~ 118 (198)
T cd04147 78 YAVDDPESFEEVERLREEILEVKED--KFVPIVVVGNKADSLE 118 (198)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCC--CCCcEEEEEEcccccc
Confidence 9999999999999998887765432 2699999999999865
No 287
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=1.7e-17 Score=143.97 Aligned_cols=168 Identities=21% Similarity=0.220 Sum_probs=117.4
Q ss_pred ccCCCCCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccch-------
Q 010254 5 SAANSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDR------- 77 (514)
Q Consensus 5 ~~~~~~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~------- 77 (514)
++..+.-+......|+++|++|||||||||+|++++. -+.++..||.|....+-.-+-.+.++|.||.....
T Consensus 13 a~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~-LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e 91 (200)
T COG0218 13 APDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKN-LARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKE 91 (200)
T ss_pred cCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcc-eeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHH
Confidence 4444555566778999999999999999999999763 35566677877555443323349999999975322
Q ss_pred ---hhHHHhhh---ccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHH
Q 010254 78 ---GKLGEELR---RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF 151 (514)
Q Consensus 78 ---~~~~~~~~---~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 151 (514)
..+.+|++ +-.++++++|+..+. ...+...++++... +.|+++|+||+|..... .....+..+++.+
T Consensus 92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~~--~i~~~vv~tK~DKi~~~---~~~k~l~~v~~~l 164 (200)
T COG0218 92 KWKKLIEEYLEKRANLKGVVLLIDARHPP--KDLDREMIEFLLEL--GIPVIVVLTKADKLKKS---ERNKQLNKVAEEL 164 (200)
T ss_pred HHHHHHHHHHhhchhheEEEEEEECCCCC--cHHHHHHHHHHHHc--CCCeEEEEEccccCChh---HHHHHHHHHHHHh
Confidence 23445554 356788888866554 44444589999988 99999999999998752 1222223344433
Q ss_pred hccC--c--EEEcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 152 REIE--T--CIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 152 ~~~~--~--~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
.... . ++..|+.++. |+++|+..|.+.+.
T Consensus 165 ~~~~~~~~~~~~~ss~~k~------------Gi~~l~~~i~~~~~ 197 (200)
T COG0218 165 KKPPPDDQWVVLFSSLKKK------------GIDELKAKILEWLK 197 (200)
T ss_pred cCCCCccceEEEEeccccc------------CHHHHHHHHHHHhh
Confidence 2211 2 7889999998 99999999987654
No 288
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.76 E-value=2.5e-18 Score=149.91 Aligned_cols=135 Identities=20% Similarity=0.308 Sum_probs=115.2
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEE-EEEEecCChhHHHhhhcCccccccCcEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKK-TVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
.+||++||+.+||||+|+..+..+.|+..|.||....+.. .+.+++++.. .-+|||+|++.|..++ +-.|.++|++
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~-~v~V~dg~~v~L~LwDTAGqedYDrlR--plsY~~tdvf 80 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSA-NVTVDDGKPVELGLWDTAGQEDYDRLR--PLSYPQTDVF 80 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceE-EEEecCCCEEEEeeeecCCCccccccc--ccCCCCCCEE
Confidence 4899999999999999999999999999998888866664 4555324444 5599999999999865 5689999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC
Q 010254 448 VFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM 510 (514)
Q Consensus 448 ilv~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~ 510 (514)
++||++.+++||+++ .+|+.++.++. ++.|+|+||+|.||..+ .+..+++.++|+++|+
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c----p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga 153 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC----PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGA 153 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC----CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCc
Confidence 999999999999997 67999999987 48999999999999842 2457889999999984
No 289
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.76 E-value=9.6e-18 Score=178.98 Aligned_cols=153 Identities=16% Similarity=0.179 Sum_probs=113.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccchhh----------H
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRGK----------L 80 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~~----------~ 80 (514)
|+.++|+++|+||||||||+|+|++.+. .+...+++|++ ..+..++.++.+|||||+.++... .
T Consensus 1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~---~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~ 77 (772)
T PRK09554 1 MKKLTIGLIGNPNSGKTTLFNQLTGARQ---RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIA 77 (772)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCC---ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHH
Confidence 3468999999999999999999998763 34445777743 345667889999999998765321 1
Q ss_pred HHhh--hccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEE
Q 010254 81 GEEL--RRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCI 158 (514)
Q Consensus 81 ~~~~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (514)
..++ ..+|++++|+|+++.+.. . +|..++.+. ++|+++|+||+|+.+. +.. ....+.+.+.++. +++
T Consensus 78 ~~~l~~~~aD~vI~VvDat~ler~--l--~l~~ql~e~--giPvIvVlNK~Dl~~~-~~i--~id~~~L~~~LG~--pVv 146 (772)
T PRK09554 78 CHYILSGDADLLINVVDASNLERN--L--YLTLQLLEL--GIPCIVALNMLDIAEK-QNI--RIDIDALSARLGC--PVI 146 (772)
T ss_pred HHHHhccCCCEEEEEecCCcchhh--H--HHHHHHHHc--CCCEEEEEEchhhhhc-cCc--HHHHHHHHHHhCC--CEE
Confidence 2232 489999999998875432 2 255666666 8999999999998754 222 2334567777765 899
Q ss_pred EcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 159 ECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 159 ~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
++||+++. |++++++.+.+..+
T Consensus 147 piSA~~g~------------GIdeL~~~I~~~~~ 168 (772)
T PRK09554 147 PLVSTRGR------------GIEALKLAIDRHQA 168 (772)
T ss_pred EEEeecCC------------CHHHHHHHHHHhhh
Confidence 99999999 99999999887653
No 290
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.76 E-value=2e-17 Score=148.56 Aligned_cols=120 Identities=24% Similarity=0.256 Sum_probs=95.9
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCC-CcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPG-GTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
.+||+++|++|||||||++++...++... .++.+.......+...+ ....+.+|||+|++.+..++ ...++++|++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~d~i 79 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLW--KSYTRCTDGI 79 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHH--HHHhccCCEE
Confidence 37999999999999999999999888754 46666555444444422 34567799999999888776 5678999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
++|||+++..+++.+..|+..+...... .++|+++|+||+|+..
T Consensus 80 i~v~D~~~~~~~~~~~~~~~~i~~~~~~--~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 80 VFVVDSVDVERMEEAKTELHKITRFSEN--QGVPVLVLANKQDLPN 123 (183)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhhhhc--CCCcEEEEEECcCccc
Confidence 9999999999999998888877654322 2699999999999864
No 291
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.76 E-value=3.9e-18 Score=141.85 Aligned_cols=114 Identities=22% Similarity=0.276 Sum_probs=83.8
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCC--CCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFS--DNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
||+|+|++|||||||+++|++..+. ..+.+..+.+..............+.+||+.|.+.+.... ...+.++|++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--~~~~~~~d~~i 78 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQH--QFFLKKADAVI 78 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTS--HHHHHHSCEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccc--cchhhcCcEEE
Confidence 7999999999999999999999876 2222344455665555555344456799999998777554 34589999999
Q ss_pred EEEeCCChhhHHHHHHH---HHHHHhcCCCCCCCCcEEEEEeCCC
Q 010254 449 FVHDSSDESSWKRATEL---LVEVASYGEDTGFEVPCLIVAAKDD 490 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~---~~~~~~~~~~~~~~~p~ilv~nK~D 490 (514)
+|||+++++||+.+..+ +..+.... .++|++||+||.|
T Consensus 79 lv~D~s~~~s~~~~~~~~~~l~~~~~~~----~~~piilv~nK~D 119 (119)
T PF08477_consen 79 LVYDLSDPESLEYLSQLLKWLKNIRKRD----KNIPIILVGNKSD 119 (119)
T ss_dssp EEEECCGHHHHHHHHHHHHHHHHHHHHS----SCSEEEEEEE-TC
T ss_pred EEEcCCChHHHHHHHHHHHHHHHHHccC----CCCCEEEEEeccC
Confidence 99999999999998554 55555432 2699999999998
No 292
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.76 E-value=1.5e-17 Score=136.73 Aligned_cols=148 Identities=16% Similarity=0.207 Sum_probs=106.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
.+.++|.|+|..|+||||++++|.+... ..+.++.+ ..+. ....+++.+.+||.+|+...+..+..|+..+|++|+|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~g-f~Ik-tl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwv 90 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLG-FQIK-TLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWV 90 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccc-eeeE-EEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence 4489999999999999999999999872 22332111 1111 2335578999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccc--hhHhhhhHHHHHHHhccCcEEEcCccccc
Q 010254 94 YACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQ--VSLEQVMMPIMQQFREIETCIECSALKQI 166 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~ 166 (514)
+|.+++..+++....+-..+.... -+.|+++++||.|+...-.. +...-..+++++.... +++.|||.+|+
T Consensus 91 vDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~--~l~~cs~~tge 164 (185)
T KOG0073|consen 91 VDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHW--RLVKCSAVTGE 164 (185)
T ss_pred EECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCc--eEEEEeccccc
Confidence 999998888776654444444321 36899999999999854211 1111223344333322 88999999998
No 293
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.75 E-value=2e-17 Score=150.89 Aligned_cols=164 Identities=16% Similarity=0.101 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc-----ce-------------------------e------C
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE-----DF-------------------------Y------P 60 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~-----~~-------------------------~------~ 60 (514)
++|+|+|+.|+|||||+.+|.+............+.++.. .+ . .
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 5799999999999999999976521111111011111000 00 0 0
Q ss_pred CeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchh
Q 010254 61 DRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPE-TLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVS 139 (514)
Q Consensus 61 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~ 139 (514)
....+.+|||||++.+.......+..+|++++|+|++++. ..+... .+..+... ...|+++|+||+|+........
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~--~l~~~~~~-~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSE--HLAALEIM-GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHH--HHHHHHHc-CCCcEEEEEEchhccCHHHHHH
Confidence 1267999999999887777777888999999999998742 112121 22223333 1357999999999976411111
Q ss_pred HhhhhHHHHHHHh-ccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCcc
Q 010254 140 LEQVMMPIMQQFR-EIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREGV 195 (514)
Q Consensus 140 ~~~~~~~~~~~~~-~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~ 195 (514)
..+.+..+.+.+. ...+++++||++|. |+++|++.+.+.+++++
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~------------gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKY------------NIDVLLEYIVKKIPTPP 202 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCC------------CHHHHHHHHHHhCCCCC
Confidence 1112222222211 12379999999999 99999999999888753
No 294
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.75 E-value=2.4e-17 Score=145.72 Aligned_cols=118 Identities=19% Similarity=0.257 Sum_probs=91.0
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|.++.+...+. +...... ....+.+....+.+|||+|.+.+...+ ...+..+|++++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~ad~~il 76 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVP-RVLPEIT-IPADVTPERVPTTIVDTSSRPQDRANL--AAEIRKANVICL 76 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCC-CcccceE-eeeeecCCeEEEEEEeCCCchhhhHHH--hhhcccCCEEEE
Confidence 389999999999999999999999876543 3222222 333344355667799999988776555 456799999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 010254 450 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 495 (514)
Q Consensus 450 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 495 (514)
|||++++.||+.+. .|+..+.... .+.|+++|+||+|+...+
T Consensus 77 v~d~~~~~s~~~~~~~~~~~i~~~~----~~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 77 VYSVDRPSTLERIRTKWLPLIRRLG----VKVPIILVGNKSDLRDGS 119 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEchhccccc
Confidence 99999999999985 5777776543 269999999999997654
No 295
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.75 E-value=2.1e-17 Score=147.16 Aligned_cols=128 Identities=19% Similarity=0.284 Sum_probs=96.9
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|.+..+. .+.++.+ +.+..+.+. ...+.+||++|++.+...+ ..+++++|++
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~--~~~l~l~D~~G~~~~~~~~--~~~~~~~d~~ 85 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDID-TISPTLG--FQIKTLEYE--GYKLNIWDVGGQKTLRPYW--RNYFESTDAL 85 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccc--cceEEEEEC--CEEEEEEECCCCHHHHHHH--HHHhCCCCEE
Confidence 4589999999999999999999988654 3335555 344445544 3567799999999888776 5678999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHH
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVF 505 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 505 (514)
++|||++++.+|+....|+..+..... ..+.|+++|+||+|+.... ...+..++.
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~ 140 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEER--LAGATLLILANKQDLPGAL-SEEEIREAL 140 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChh--hcCCCEEEEEECcccccCC-CHHHHHHHh
Confidence 999999999999999888877654321 1279999999999997532 333344443
No 296
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.75 E-value=2.1e-17 Score=146.47 Aligned_cols=126 Identities=22% Similarity=0.248 Sum_probs=97.1
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 450 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv 450 (514)
||+++|.+|||||||+++|.+..+.. +.+|.+..+ ..+.. ....+.+|||+|++.+...+ ..+++++|++++|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~--~~~~~--~~~~i~l~Dt~G~~~~~~~~--~~~~~~ad~ii~V 73 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNV--ETVEY--KNLKFTIWDVGGKHKLRPLW--KHYYLNTQAVVFV 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeE--EEEEE--CCEEEEEEECCCChhcchHH--HHHhccCCEEEEE
Confidence 58999999999999999999987754 445555443 33333 34567799999998887666 5678999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHH
Q 010254 451 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFT 506 (514)
Q Consensus 451 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 506 (514)
||++++.+|+.+..|+..+...... .+.|++||+||+|+.. ++...+..++++
T Consensus 74 ~D~s~~~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~~~~~~~~~~~ 126 (169)
T cd04158 74 VDSSHRDRVSEAHSELAKLLTEKEL--RDALLLIFANKQDVAG-ALSVEEMTELLS 126 (169)
T ss_pred EeCCcHHHHHHHHHHHHHHhcChhh--CCCCEEEEEeCcCccc-CCCHHHHHHHhC
Confidence 9999999999999998887654221 2589999999999965 344555555554
No 297
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.74 E-value=3.1e-17 Score=145.05 Aligned_cols=116 Identities=21% Similarity=0.239 Sum_probs=94.1
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 450 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv 450 (514)
+|+++|++|||||||+++|.+. +...+.++.+.. ...+.. +...+.+||++|++.+..++ ..+++++|++|+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~--~~~~~~i~D~~G~~~~~~~~--~~~~~~a~~ii~V 73 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRL--DKYEVCIFDLGGGANFRGIW--VNYYAEAHGLVFV 73 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEE--CCEEEEEEECCCcHHHHHHH--HHHHcCCCEEEEE
Confidence 3799999999999999999987 665666666643 344444 34667799999999888877 5788999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 010254 451 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 495 (514)
Q Consensus 451 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 495 (514)
||+++..+|+.+..|+..+...... .++|+++|+||+|+...+
T Consensus 74 ~D~s~~~s~~~~~~~l~~l~~~~~~--~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 74 VDSSDDDRVQEVKEILRELLQHPRV--SGKPILVLANKQDKKNAL 116 (167)
T ss_pred EECCchhHHHHHHHHHHHHHcCccc--cCCcEEEEEeCCCCcCCC
Confidence 9999999999999999888765321 269999999999997643
No 298
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.74 E-value=2.5e-17 Score=171.95 Aligned_cols=160 Identities=19% Similarity=0.126 Sum_probs=111.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
+.|+++|++|+|||||+++|++............++|+.. .+...+..+.+|||||++.+...+...+.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 4799999999999999999997542111112234455333 2334458899999999998888888889999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCcccccchhHhhhhHHHHHHHhc--cCcEEEcCcccccccee
Q 010254 94 YACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--IETCIECSALKQIQVKC 170 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~Sa~~~~~~~~ 170 (514)
+|++++...+..+ .+..+... ++| +++|+||+|+.+..+.....+.+..+.+.++. ..+++++||++|.
T Consensus 81 VDa~~G~~~qT~e--hl~il~~l--gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~---- 152 (581)
T TIGR00475 81 VDADEGVMTQTGE--HLAVLDLL--GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ---- 152 (581)
T ss_pred EECCCCCcHHHHH--HHHHHHHc--CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC----
Confidence 9998754333322 33344444 677 99999999998652222233344455554432 2389999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhc
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++.+.+...++
T Consensus 153 --------GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 153 --------GIGELKKELKNLLE 166 (581)
T ss_pred --------CchhHHHHHHHHHH
Confidence 88888887766554
No 299
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.74 E-value=4.8e-17 Score=143.20 Aligned_cols=117 Identities=21% Similarity=0.189 Sum_probs=91.2
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCC-CCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPF-SDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+|+++|++|||||||+++|.+..+ ...+.++.+... ..+. . +...+.+|||+|.+.+..++ ..+++.+|++++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~-~-~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ii~ 74 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFE-K-GNLSFTAFDMSGQGKYRGLW--EHYYKNIQGIIF 74 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEE-E-CCEEEEEEECCCCHhhHHHH--HHHHccCCEEEE
Confidence 489999999999999999998763 445556666433 2232 2 45667799999999988777 577899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
|+|++++.+|..+..|+..+.........++|+++|+||+|+..
T Consensus 75 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 75 VIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 99999999999888888876553211113799999999999875
No 300
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.74 E-value=3.2e-17 Score=170.06 Aligned_cols=158 Identities=18% Similarity=0.152 Sum_probs=108.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeC-CeeEEEEEeCCCCccchhhHHHhhhcc
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYP-DRVPITIIDTPSSVEDRGKLGEELRRA 87 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~a 87 (514)
...+..+|+|+|++|+|||||+++|.+.++.... .+++|... .+.. ++..+.+|||||++.+...+...+..+
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e---~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~a 159 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGE---AGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVT 159 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccc---CCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccC
Confidence 4456789999999999999999999998764432 23344222 2222 233899999999999988888889999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHH---HHHHHhccCcEEEcCccc
Q 010254 88 DAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMP---IMQQFREIETCIECSALK 164 (514)
Q Consensus 88 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~Sa~~ 164 (514)
|++++|+|++++...+... .+..+... ++|+++++||+|+.... .......... ....++...+++++||++
T Consensus 160 DiaILVVda~dgv~~qT~e--~i~~~~~~--~vPiIVviNKiDl~~~~-~e~v~~~L~~~g~~~~~~~~~~~~v~iSAkt 234 (587)
T TIGR00487 160 DIVVLVVAADDGVMPQTIE--AISHAKAA--NVPIIVAINKIDKPEAN-PDRVKQELSEYGLVPEDWGGDTIFVPVSALT 234 (587)
T ss_pred CEEEEEEECCCCCCHhHHH--HHHHHHHc--CCCEEEEEECcccccCC-HHHHHHHHHHhhhhHHhcCCCceEEEEECCC
Confidence 9999999998755444333 23334444 79999999999996531 1111111110 111222223689999999
Q ss_pred cccceecCCCCChhhHHHHHHHHHH
Q 010254 165 QIQVKCFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 165 ~~~~~~f~~~l~~~~i~~L~~~i~~ 189 (514)
|. |+++|++.|..
T Consensus 235 Ge------------GI~eLl~~I~~ 247 (587)
T TIGR00487 235 GD------------GIDELLDMILL 247 (587)
T ss_pred CC------------ChHHHHHhhhh
Confidence 99 88888888754
No 301
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.74 E-value=4.1e-17 Score=147.10 Aligned_cols=137 Identities=22% Similarity=0.279 Sum_probs=105.0
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
.|++++|++|||||||+++|..+.+...+.++....+. ..+...+......+||++|++.+.... +..+..+|++++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~--~~~~~~a~~~ll 78 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLR--PLSYSKAHVILI 78 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccc--hhhcCCCCEEEE
Confidence 48999999999999999999988887666555444333 344555333456689999998876543 456789999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc----------c-cchhhHHHHHHHcCC-ccc
Q 010254 450 VHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF----------A-MAIQDSTRVFTFLVM-VLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----------~-~~~~~~~~~~~~~~~-~~~ 513 (514)
|||+++.++|+.+. .|+..+.... ++.|+++|+||+|+... + +..+++.++++++++ +||
T Consensus 79 v~~i~~~~s~~~~~~~~~~~i~~~~----~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (187)
T cd04129 79 GFAVDTPDSLENVRTKWIEEVRRYC----PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYM 151 (187)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEE
Confidence 99999999999996 5888887543 26999999999998542 2 345678889999885 554
No 302
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.74 E-value=5.8e-17 Score=145.81 Aligned_cols=171 Identities=13% Similarity=0.129 Sum_probs=111.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC----C--C-------CCCCCCCcccc---cceeCCeeEEEEEeCCCCccchhh
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFP----A--N-------VPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRGK 79 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~----~--~-------~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~~ 79 (514)
.++|+++|.+++|||||+++|++.... . . ......++|+. ..+..++..+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 479999999999999999999864100 0 0 01112334422 234456788999999999888777
Q ss_pred HHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCccccc-chhHhhhhHHHHHHHhc---c
Q 010254 80 LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLDLRDENQ-QVSLEQVMMPIMQQFRE---I 154 (514)
Q Consensus 80 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~---~ 154 (514)
....+..+|++++|+|+..+...+.. ..+..+... ++| +|+|+||+|+....+ .....+.+..+...++. .
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQTR--EHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 78889999999999998875443332 255566665 676 789999999964311 11122334444444432 1
Q ss_pred CcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 155 ETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 155 ~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
.+++++||++|.|... . +--.+++..|.+.|.+..+
T Consensus 158 v~iipiSa~~g~n~~~-~-~~w~~~~~~l~~~l~~~~~ 193 (195)
T cd01884 158 TPIVRGSALKALEGDD-P-NKWVKKILELLDALDSYIP 193 (195)
T ss_pred CeEEEeeCccccCCCC-C-CcchhcHhHHHHHHHhCCC
Confidence 3799999999996521 1 1111246777777765543
No 303
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.73 E-value=3.9e-17 Score=171.60 Aligned_cols=160 Identities=16% Similarity=0.152 Sum_probs=111.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc-------cceeCCeeEEEEEeCCCCccchhhHHHhh
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP-------EDFYPDRVPITIIDTPSSVEDRGKLGEEL 84 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~-------~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 84 (514)
...+..+|+|+|++|+|||||+++|.+..+.... .++.|.. ..+...+..+.+|||||++.+...+..++
T Consensus 240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e---~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~ 316 (742)
T CHL00189 240 SINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKE---AGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGA 316 (742)
T ss_pred hcccCCEEEEECCCCCCHHHHHHHHHhccCcccc---CCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHH
Confidence 4467789999999999999999999987754322 2233311 11223468999999999999988888899
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHH---HHHHHhccCcEEEcC
Q 010254 85 RRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMP---IMQQFREIETCIECS 161 (514)
Q Consensus 85 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~S 161 (514)
..+|++|+|+|++++...+... .+..+... ++|+|+|+||+|+.... .....+.+.. +...++...+++++|
T Consensus 317 ~~aDiaILVVDA~dGv~~QT~E--~I~~~k~~--~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv~VS 391 (742)
T CHL00189 317 NVTDIAILIIAADDGVKPQTIE--AINYIQAA--NVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDTPMIPIS 391 (742)
T ss_pred HHCCEEEEEEECcCCCChhhHH--HHHHHHhc--CceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCceEEEEE
Confidence 9999999999998765444333 23334444 79999999999997541 1111111111 122233233799999
Q ss_pred ccccccceecCCCCChhhHHHHHHHHHHHh
Q 010254 162 ALKQIQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 162 a~~~~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
|++|. |+++|++.|....
T Consensus 392 AktG~------------GIdeLle~I~~l~ 409 (742)
T CHL00189 392 ASQGT------------NIDKLLETILLLA 409 (742)
T ss_pred CCCCC------------CHHHHHHhhhhhh
Confidence 99999 9999998887643
No 304
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.73 E-value=4.1e-17 Score=173.07 Aligned_cols=159 Identities=18% Similarity=0.115 Sum_probs=110.9
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccchhhHHHhhhcc
Q 010254 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRGKLGEELRRA 87 (514)
Q Consensus 11 ~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a 87 (514)
....+...|+|+|+.|+|||||+++|.+.++.... .++.|.. ..+...+..++||||||++.+..++...+..+
T Consensus 285 ~~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e---~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~a 361 (787)
T PRK05306 285 DLVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGE---AGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVT 361 (787)
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHhCCccccc---cCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhC
Confidence 34567889999999999999999999987754332 2333322 22334467899999999999988888889999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhh---HHHHHHHhccCcEEEcCccc
Q 010254 88 DAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVM---MPIMQQFREIETCIECSALK 164 (514)
Q Consensus 88 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~Sa~~ 164 (514)
|++|+|||++++...+... .+..+... ++|+|+|+||+|+.... .......+ ..+...++...+++++||++
T Consensus 362 DiaILVVdAddGv~~qT~e--~i~~a~~~--~vPiIVviNKiDl~~a~-~e~V~~eL~~~~~~~e~~g~~vp~vpvSAkt 436 (787)
T PRK05306 362 DIVVLVVAADDGVMPQTIE--AINHAKAA--GVPIIVAINKIDKPGAN-PDRVKQELSEYGLVPEEWGGDTIFVPVSAKT 436 (787)
T ss_pred CEEEEEEECCCCCCHhHHH--HHHHHHhc--CCcEEEEEECccccccC-HHHHHHHHHHhcccHHHhCCCceEEEEeCCC
Confidence 9999999998854433333 22334444 79999999999996531 11111111 11222333223799999999
Q ss_pred cccceecCCCCChhhHHHHHHHHHH
Q 010254 165 QIQVKCFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 165 ~~~~~~f~~~l~~~~i~~L~~~i~~ 189 (514)
|. |+++|++.|..
T Consensus 437 G~------------GI~eLle~I~~ 449 (787)
T PRK05306 437 GE------------GIDELLEAILL 449 (787)
T ss_pred CC------------CchHHHHhhhh
Confidence 99 88888887754
No 305
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.73 E-value=7e-17 Score=141.85 Aligned_cols=115 Identities=26% Similarity=0.284 Sum_probs=92.1
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 450 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv 450 (514)
+|+++|++|||||||+++|.+.++... .++.+. ....+... +...+.+||++|++.+...+ ...++.+|++++|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~--~~~~~~~~-~~~~l~i~D~~G~~~~~~~~--~~~~~~~~~iv~v 74 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGF--NVEMLQLE-KHLSLTVWDVGGQEKMRTVW--KCYLENTDGLVYV 74 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCc--ceEEEEeC-CceEEEEEECCCCHhHHHHH--HHHhccCCEEEEE
Confidence 589999999999999999999988644 355553 33455554 55677899999998887766 4678999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 451 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 451 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
+|++++.++.....|+..+...... .+.|+++|+||+|+..
T Consensus 75 ~D~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~ 115 (160)
T cd04156 75 VDSSDEARLDESQKELKHILKNEHI--KGVPVVLLANKQDLPG 115 (160)
T ss_pred EECCcHHHHHHHHHHHHHHHhchhh--cCCCEEEEEECccccc
Confidence 9999999999999888887654211 2699999999999864
No 306
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.73 E-value=1.1e-16 Score=142.71 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=92.1
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.+||+++|++|||||||++++.++.+... .++.+.++. .+... ...+.+||++|++.+...+ ..+++++|+++
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~--~~~~~~~d~vi 87 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-SPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSW--NTYYTNTDAVI 87 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc-CCccccceE--EEEEC--CeEEEEEECCCCHHHHHHH--HHHhhcCCEEE
Confidence 47999999999999999999998887753 466555443 33332 4667799999999888776 56789999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
+|+|+++++++.....++..+...... .++|+++++||+|+..
T Consensus 88 ~V~D~s~~~~~~~~~~~l~~~~~~~~~--~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 88 LVIDSTDRERLPLTKEELYKMLAHEDL--RKAVLLVLANKQDLKG 130 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhh--cCCCEEEEEECCCCCC
Confidence 999999999998888887776543211 2699999999999865
No 307
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.73 E-value=2.5e-17 Score=150.81 Aligned_cols=146 Identities=21% Similarity=0.160 Sum_probs=95.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC------------------------------CCCCccc---ccceeCCeeE
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPP------------------------------VLPPTRL---PEDFYPDRVP 64 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~------------------------------~~~~tt~---~~~~~~~~~~ 64 (514)
||+|+|++|+|||||+++|+... ..+.+ ...++|+ ...+..++.+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDS--KSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCce
Confidence 68999999999999999998754 22110 1133342 2234456789
Q ss_pred EEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccccc--chhHhh
Q 010254 65 ITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ--QVSLEQ 142 (514)
Q Consensus 65 ~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~--~~~~~~ 142 (514)
+.||||||++++...+..+++.+|++++|+|++.+..-+... ....+.... ..++|+|+||+|+..... ......
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~--~~~~~~~~~-~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRR--HSYILSLLG-IRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHH--HHHHHHHcC-CCcEEEEEEchhcccCCHHHHHHHHH
Confidence 999999999887666677889999999999998764322221 333344331 245788999999875311 111222
Q ss_pred hhHHHHHHHhc-cCcEEEcCccccccc
Q 010254 143 VMMPIMQQFRE-IETCIECSALKQIQV 168 (514)
Q Consensus 143 ~~~~~~~~~~~-~~~~i~~Sa~~~~~~ 168 (514)
.+..+.+.++. ..++++|||++|.|+
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni 182 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNV 182 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCC
Confidence 33444445442 125899999999944
No 308
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.73 E-value=7.9e-17 Score=168.16 Aligned_cols=159 Identities=18% Similarity=0.153 Sum_probs=114.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCCC-----CCCcccc-----cce---eCCeeEEEEEeCCCCccc
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADT-------FPANVPPV-----LPPTRLP-----EDF---YPDRVPITIIDTPSSVED 76 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~-------~~~~~~~~-----~~~tt~~-----~~~---~~~~~~~~l~Dt~G~~~~ 76 (514)
-+|+|+|++++|||||+++|+... +...+... ..+.|+. ..+ +...+.+.||||||+.++
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 379999999999999999998753 11111111 1133322 222 233588999999999999
Q ss_pred hhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhcc-C
Q 010254 77 RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI-E 155 (514)
Q Consensus 77 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~ 155 (514)
...+..+++.+|++|+|+|++++.+.+.... |...+. . ++|+++|+||+|+... . .++...++.+.++.. .
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~-~~~~~~-~--~ipiIiViNKiDl~~~-~---~~~~~~el~~~lg~~~~ 155 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLAN-VYLALE-N--DLEIIPVINKIDLPSA-D---PERVKKEIEEVIGLDAS 155 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHH-HHHHHH-c--CCCEEEEEECcCCCcc-C---HHHHHHHHHHHhCCCcc
Confidence 8888899999999999999998877776653 554443 2 7899999999998653 1 122223444444421 2
Q ss_pred cEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCcc
Q 010254 156 TCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREGV 195 (514)
Q Consensus 156 ~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~ 195 (514)
.++++||++|. |+++|++.|.+.+|...
T Consensus 156 ~vi~vSAktG~------------GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 156 EAILASAKTGI------------GIEEILEAIVKRVPPPK 183 (595)
T ss_pred eEEEeeccCCC------------CHHHHHHHHHHhCCCCC
Confidence 48999999999 99999999999887553
No 309
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=99.73 E-value=2.6e-18 Score=125.47 Aligned_cols=70 Identities=53% Similarity=0.971 Sum_probs=66.9
Q ss_pred CCCCCcccccccccCCCcccHHHHHHHhhhhhcCCHHHHHHHHHHhCCCC-----ChhhHHHHhhhhhhhhhhhc
Q 010254 295 PWDEAPYKDAAEKTALGGLSLDGFLSEWALMTLLDPARSVENLIYIGYPG-----DPSSAIRVTRKRRIDRKKQQ 364 (514)
Q Consensus 295 p~~~~~~~~~~~~~~~~~i~~~~~~~~w~~~~~~~~~~~~~~l~~~g~~~-----~~~~a~~~~~~~~~~~~~~~ 364 (514)
||.+..|++++++|+.|+||+++|||+|+++|++||+.++++|+|+||++ ++.+|++++|+|+.++++++
T Consensus 1 PW~~~~~~~~~~~n~~G~iTl~gfLa~W~l~T~ld~~~tle~L~YLGy~~~~~~~~~~~Ai~VTr~R~~d~~k~~ 75 (76)
T PF08355_consen 1 PWIEPDFPDSVVTNEKGWITLQGFLAQWSLTTLLDPKRTLEYLAYLGYPGLSEQDSQTSAITVTRPRRLDRKKGQ 75 (76)
T ss_pred CCCCCCCcceeEEcCCCcCcHHHHHHHHHHHHHhCHHHHHHHHhhcCCCCccCCCCchhheEEcCchhhhhhccC
Confidence 89999999999999999999999999999999999999999999999999 89999999999999887654
No 310
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.72 E-value=1.4e-17 Score=133.98 Aligned_cols=157 Identities=18% Similarity=0.256 Sum_probs=121.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
+..+++.++|-.|+|||||+|.+..+.+.+...++.+- .-..+..+.+.+.+||.+|+..+..+++.|.+..+++++|
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGf--nmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGF--NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccc--eeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 45689999999999999999999988875543221111 1224556789999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc--c----CcEEEcCccccc
Q 010254 94 YACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--I----ETCIECSALKQI 166 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~----~~~i~~Sa~~~~ 166 (514)
+|+.+++.++-..+++...+.+.. .++|+++.|||.|+.+.- .. ..+..+++- + ..|+.+||+...
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL---~~----~~li~rmgL~sitdREvcC~siScke~~ 168 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL---SK----IALIERMGLSSITDREVCCFSISCKEKV 168 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc---cH----HHHHHHhCccccccceEEEEEEEEcCCc
Confidence 999999888777766777766543 479999999999998762 11 122222221 1 168999999999
Q ss_pred cceecCCCCChhhHHHHHHHHHHHh
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
+|+.+.+++.++.
T Consensus 169 ------------Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 169 ------------NIDITLDWLIEHS 181 (186)
T ss_pred ------------cHHHHHHHHHHHh
Confidence 8999999998764
No 311
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.72 E-value=7.3e-17 Score=139.90 Aligned_cols=153 Identities=21% Similarity=0.265 Sum_probs=104.6
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CCCCCCC-CCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCC
Q 010254 21 VCGEKGTGKSSLIVTAAADTFP-ANVPPVL-PPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDR 98 (514)
Q Consensus 21 ivG~~nvGKSsLin~l~~~~~~-~~~~~~~-~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~ 98 (514)
|+|++|+|||||+|+|.+.... ....++. ...............+.+||+||...........++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 5899999999999999998752 2222211 1111222333447889999999998877777788999999999999999
Q ss_pred cccHHHHHHHH-HHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCCCCCh
Q 010254 99 PETLDELSTFW-LPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNSPLQP 177 (514)
Q Consensus 99 ~~s~~~~~~~~-~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~l~~ 177 (514)
+.+.......+ .........++|+++|+||+|+....... ... ......... ..+++++||.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~-~~~-~~~~~~~~~-~~~~~~~s~~~~~----------- 146 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVS-EEE-LAEQLAKEL-GVPYFETSAKTGE----------- 146 (157)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchH-HHH-HHHHHHhhc-CCcEEEEecCCCC-----------
Confidence 88877776521 22222234589999999999987652111 110 011122222 2389999999999
Q ss_pred hhHHHHHHHHH
Q 010254 178 SEIVGVKRVVQ 188 (514)
Q Consensus 178 ~~i~~L~~~i~ 188 (514)
|+.++.++|.
T Consensus 147 -~i~~~~~~l~ 156 (157)
T cd00882 147 -NVEELFEELA 156 (157)
T ss_pred -ChHHHHHHHh
Confidence 8888888764
No 312
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.71 E-value=8.9e-17 Score=162.71 Aligned_cols=155 Identities=15% Similarity=0.199 Sum_probs=118.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccch------hhHHHhh-
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDR------GKLGEEL- 84 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~- 84 (514)
+..+|+++|+||||||||||+|+|.+ ..++..||+|++ ..+..++..+.++|.||..... ...+.++
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~---q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll 78 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGAN---QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL 78 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccC---ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence 45679999999999999999999987 466778898844 4566677889999999986433 2334444
Q ss_pred -hccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcc
Q 010254 85 -RRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (514)
Q Consensus 85 -~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 163 (514)
.++|+++-|+|+++-+. ++ ++.-++.+. ++|++++.|++|.... +.... ..+.+.+.++. |++++||+
T Consensus 79 ~~~~D~ivnVvDAtnLeR--nL--yltlQLlE~--g~p~ilaLNm~D~A~~-~Gi~I--D~~~L~~~LGv--PVv~tvA~ 147 (653)
T COG0370 79 EGKPDLIVNVVDATNLER--NL--YLTLQLLEL--GIPMILALNMIDEAKK-RGIRI--DIEKLSKLLGV--PVVPTVAK 147 (653)
T ss_pred cCCCCEEEEEcccchHHH--HH--HHHHHHHHc--CCCeEEEeccHhhHHh-cCCcc--cHHHHHHHhCC--CEEEEEee
Confidence 46799999999887543 22 244555556 8999999999998765 33333 34667788876 99999999
Q ss_pred ccccceecCCCCChhhHHHHHHHHHHHhcCcc
Q 010254 164 KQIQVKCFNSPLQPSEIVGVKRVVQEKLREGV 195 (514)
Q Consensus 164 ~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~ 195 (514)
+|. |+++|++.+.+..+...
T Consensus 148 ~g~------------G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 148 RGE------------GLEELKRAIIELAESKT 167 (653)
T ss_pred cCC------------CHHHHHHHHHHhccccc
Confidence 999 99999999988766544
No 313
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.70 E-value=3.7e-16 Score=140.41 Aligned_cols=116 Identities=22% Similarity=0.250 Sum_probs=90.7
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.+||+++|.+|||||||+++|.++.+.. +.++.+. ....+.. +...+.+||++|.+.+...+ ..+++++|+++
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~~~D~~G~~~~~~~~--~~~~~~ad~ii 89 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP--TSEELAI--GNIKFTTFDLGGHQQARRLW--KDYFPEVNGIV 89 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc--ceEEEEE--CCEEEEEEECCCCHHHHHHH--HHHhCCCCEEE
Confidence 3789999999999999999999987653 3344333 2333433 34567789999998888777 57889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
+|+|++++.++.....++..+...... .++|+++|+||+|+..
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~--~~~piliv~NK~Dl~~ 132 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEEL--ATVPFLILGNKIDAPY 132 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhh--cCCCEEEEEeCccccC
Confidence 999999999999988888776643211 2699999999999864
No 314
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.70 E-value=1.2e-16 Score=162.42 Aligned_cols=154 Identities=20% Similarity=0.154 Sum_probs=100.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------------------------CCCCCCCccccc---ceeCCe
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPAN----------------------------VPPVLPPTRLPE---DFYPDR 62 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~----------------------------~~~~~~~tt~~~---~~~~~~ 62 (514)
+..++|+|+|++|+|||||+++|+...-... ......++|+.. .+..++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 4579999999999999999999995431110 001134555332 455678
Q ss_pred eEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc--cchhH
Q 010254 63 VPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN--QQVSL 140 (514)
Q Consensus 63 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~--~~~~~ 140 (514)
+.+.+|||||++++.......+..+|++++|+|++++.+.......++..+.... ..|+++|+||+|+.+.. +....
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~~~~ 162 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-INQLIVAINKMDAVNYDEKRYEEV 162 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-CCeEEEEEEccccccccHHHHHHH
Confidence 8999999999988876666678899999999999873222222222334444441 24699999999997531 11112
Q ss_pred hhhhHHHHHHHhc---cCcEEEcCccccccc
Q 010254 141 EQVMMPIMQQFRE---IETCIECSALKQIQV 168 (514)
Q Consensus 141 ~~~~~~~~~~~~~---~~~~i~~Sa~~~~~~ 168 (514)
.+.+..+.+.++. ..++++|||++|.|+
T Consensus 163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi 193 (425)
T PRK12317 163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNV 193 (425)
T ss_pred HHHHHHHHHhhCCCcCcceEEEeecccCCCc
Confidence 2233444444432 126899999999966
No 315
>PTZ00099 rab6; Provisional
Probab=99.69 E-value=2.6e-16 Score=139.61 Aligned_cols=122 Identities=20% Similarity=0.270 Sum_probs=98.3
Q ss_pred cceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCccc
Q 010254 56 EDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 56 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~ 134 (514)
..+..+.+.+.||||||++.+...+..+++.||++|+|||++++.+++.+.. |+..+.+.. ++.|++||+||+|+...
T Consensus 22 ~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~-w~~~i~~~~~~~~piilVgNK~DL~~~ 100 (176)
T PTZ00099 22 LYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK-WIQDILNERGKDVIIALVGNKTDLGDL 100 (176)
T ss_pred EEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEECcccccc
Confidence 3455667899999999999999888999999999999999999999999875 888776543 57899999999999754
Q ss_pred ccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 135 NQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
+.+..++ ...+++.++. .+++|||++|. |++++.+.|.+.+++.
T Consensus 101 -~~v~~~e-~~~~~~~~~~--~~~e~SAk~g~------------nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 101 -RKVTYEE-GMQKAQEYNT--MFHETSAKAGH------------NIKVLFKKIAAKLPNL 144 (176)
T ss_pred -cCCCHHH-HHHHHHHcCC--EEEEEECCCCC------------CHHHHHHHHHHHHHhc
Confidence 3344333 3445555543 68999999999 9999999999888753
No 316
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.69 E-value=4.3e-16 Score=141.33 Aligned_cols=161 Identities=15% Similarity=0.165 Sum_probs=103.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CCCCCcccc-ccee-CCeeEEEEEeCCCCccchhhHHHh-----hhc
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVP--PVLPPTRLP-EDFY-PDRVPITIIDTPSSVEDRGKLGEE-----LRR 86 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~--~~~~~tt~~-~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~-----~~~ 86 (514)
+++|+|+|++|||||||+|+|++........ .....+|.. ..+. .....+.+|||||+.........+ +.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 4799999999999999999999965432211 111112221 1222 123479999999986543323333 577
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccc----------hhHhhhhHHHHHHHh----
Q 010254 87 ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQ----------VSLEQVMMPIMQQFR---- 152 (514)
Q Consensus 87 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~---- 152 (514)
+|++++|.+ . .+...+..|+..+++. ++|+++|+||+|+...... ...++..+.+...++
T Consensus 81 ~d~~l~v~~--~--~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~ 154 (197)
T cd04104 81 YDFFIIISS--T--RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV 154 (197)
T ss_pred cCEEEEEeC--C--CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence 899999854 2 3445555588888887 7899999999998542110 111111122222232
Q ss_pred ccCcEEEcCcc--ccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 153 EIETCIECSAL--KQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 153 ~~~~~i~~Sa~--~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
...++|.+|+. .+. ++..|.+.+...+|+.
T Consensus 155 ~~p~v~~vS~~~~~~~------------~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 155 SEPPVFLVSNFDPSDY------------DFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCEEEEeCCChhhc------------ChHHHHHHHHHHhhHH
Confidence 12379999998 456 9999999999988863
No 317
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.69 E-value=3.3e-16 Score=163.92 Aligned_cols=161 Identities=16% Similarity=0.157 Sum_probs=110.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccccee----CCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFY----PDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
+-|+++|++++|||||+++|++.+..........+.|+...+. .++..+.+|||||++.+...+...+..+|++++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 3589999999999999999998552222222334556443221 245678999999999887777888999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCcccccchhHhhhhHHHHHHHhc-cCcEEEcCcccccccee
Q 010254 93 TYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE-IETCIECSALKQIQVKC 170 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~Sa~~~~~~~~ 170 (514)
|+|++.+...+..+ .+..+... ++| +|+|+||+|+.+..+.....+.+..+....+. ..+++++||++|.
T Consensus 81 VVda~eg~~~qT~e--hl~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~---- 152 (614)
T PRK10512 81 VVACDDGVMAQTRE--HLAILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGR---- 152 (614)
T ss_pred EEECCCCCcHHHHH--HHHHHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCC----
Confidence 99998754433332 44455554 556 68999999997642222222223333333321 1379999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhcC
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
|+++|++.|.+..+.
T Consensus 153 --------gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 153 --------GIDALREHLLQLPER 167 (614)
T ss_pred --------CCHHHHHHHHHhhcc
Confidence 999999999876543
No 318
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.69 E-value=6.2e-16 Score=135.52 Aligned_cols=114 Identities=20% Similarity=0.185 Sum_probs=87.6
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 450 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv 450 (514)
||+++|++|||||||+++|..+.+.. +.++.+.+. ..+.. ....+.+|||+|.+.+..++ ..+++.+|++++|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~ii~v 73 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTY--KNLKFQVWDLGGQTSIRPYW--RCYYSNTDAIIYV 73 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEE--CCEEEEEEECCCCHHHHHHH--HHHhcCCCEEEEE
Confidence 58999999999999999998887754 335544433 33433 34567799999999888776 5788999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 451 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 451 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
+|++++.++.....++..+.+.... .+.|+++|+||+|+..
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~ 114 (158)
T cd04151 74 VDSTDRDRLGTAKEELHAMLEEEEL--KGAVLLVFANKQDMPG 114 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhh--cCCcEEEEEeCCCCCC
Confidence 9999998888777766654432111 2699999999999865
No 319
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.69 E-value=4.8e-16 Score=142.98 Aligned_cols=153 Identities=19% Similarity=0.140 Sum_probs=103.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-----------CCCCcccc---------------------------ccee
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPP-----------VLPPTRLP---------------------------EDFY 59 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~-----------~~~~tt~~---------------------------~~~~ 59 (514)
||+++|+.++|||||+++|....+...... ...+.|.. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999997655321110 00111110 0112
Q ss_pred CCeeEEEEEeCCCCccchhhHHHhhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccc
Q 010254 60 PDRVPITIIDTPSSVEDRGKLGEELR--RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQ 137 (514)
Q Consensus 60 ~~~~~~~l~Dt~G~~~~~~~~~~~~~--~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~ 137 (514)
..+..+.++||||++.+.......+. .+|++++|+|++.+.+-.. ..++..+... ++|+++|+||+|+.+..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~~--~ip~ivvvNK~D~~~~~-- 154 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALAL--NIPVFVVVTKIDLAPAN-- 154 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEECccccCHH--
Confidence 33568999999999888665555554 7999999999887654333 3377777776 79999999999987542
Q ss_pred hhHhhhhHHHHHHHh---------------------------ccCcEEEcCccccccceecCCCCChhhHHHHHHHHHH
Q 010254 138 VSLEQVMMPIMQQFR---------------------------EIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 138 ~~~~~~~~~~~~~~~---------------------------~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~ 189 (514)
...+...++.+.+. ...++|.+||.+|. |++.|+..|..
T Consensus 155 -~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~------------Gi~~L~~~L~~ 220 (224)
T cd04165 155 -ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGE------------GLDLLHAFLNL 220 (224)
T ss_pred -HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCcc------------CHHHHHHHHHh
Confidence 22222233332222 23389999999999 99999987754
No 320
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.69 E-value=4.2e-16 Score=161.39 Aligned_cols=113 Identities=20% Similarity=0.174 Sum_probs=80.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC----CCCCccccccee--------------CCeeEEEEEeCCCCccchh
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPP----VLPPTRLPEDFY--------------PDRVPITIIDTPSSVEDRG 78 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~----~~~~tt~~~~~~--------------~~~~~~~l~Dt~G~~~~~~ 78 (514)
.-|+|+|++|+|||||+|+|++..+....+. ..+.+..+.... .....+.+|||||++.+..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 4699999999999999999999876432211 111111111111 1112489999999999988
Q ss_pred hHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcc
Q 010254 79 KLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD 133 (514)
Q Consensus 79 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~ 133 (514)
.+..+++.+|++++|+|++++...+... .+..++.. ++|+++|+||+|+..
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e--~i~~l~~~--~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQE--ALNILRMY--KTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHH--HHHHHHHc--CCCEEEEEECCCccc
Confidence 8888899999999999998754444333 33444444 789999999999964
No 321
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.69 E-value=5.5e-16 Score=143.85 Aligned_cols=148 Identities=22% Similarity=0.273 Sum_probs=98.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccc---ccceeCCeeEEEEEeCCCCccch-------hhHHHhhhcc
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRL---PEDFYPDRVPITIIDTPSSVEDR-------GKLGEELRRA 87 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~---~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~a 87 (514)
+|+++|+||||||||+|+|++.... ....+.+|. +..+...+..+.+|||||+.+.. ......++++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~---v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE---VAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc---ccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence 7999999999999999999987621 222344442 33344567899999999985432 1234578999
Q ss_pred CEEEEEEeCCCccc-HHHHHHH----------------------------------------HHHHHHhc----------
Q 010254 88 DAVVLTYACDRPET-LDELSTF----------------------------------------WLPELRRL---------- 116 (514)
Q Consensus 88 d~ii~v~d~~~~~s-~~~~~~~----------------------------------------~~~~l~~~---------- 116 (514)
|++++|+|++++.. ...+... ....++.+
T Consensus 79 d~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred CEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 99999999876542 2211110 11111111
Q ss_pred ---------------CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCCCCChhhHH
Q 010254 117 ---------------EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNSPLQPSEIV 181 (514)
Q Consensus 117 ---------------~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~ 181 (514)
..-+|+++|+||+|+.+. +....++. ..+++++||+++. |++
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-------~~~~~~~~----~~~~~~~SA~~g~------------gi~ 215 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-------EELDLLAR----QPNSVVISAEKGL------------NLD 215 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCCH-------HHHHHHhc----CCCEEEEcCCCCC------------CHH
Confidence 113699999999999754 12222322 1268999999999 999
Q ss_pred HHHHHHHHHh
Q 010254 182 GVKRVVQEKL 191 (514)
Q Consensus 182 ~L~~~i~~~~ 191 (514)
+|++.+.+.+
T Consensus 216 ~l~~~i~~~L 225 (233)
T cd01896 216 ELKERIWDKL 225 (233)
T ss_pred HHHHHHHHHh
Confidence 9999988755
No 322
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.69 E-value=5.4e-16 Score=135.77 Aligned_cols=151 Identities=26% Similarity=0.279 Sum_probs=101.0
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-ccc--ceeCC-eeEEEEEeCCCCccchh-------hHHHhhhccCE
Q 010254 21 VCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPE--DFYPD-RVPITIIDTPSSVEDRG-------KLGEELRRADA 89 (514)
Q Consensus 21 ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~--~~~~~-~~~~~l~Dt~G~~~~~~-------~~~~~~~~ad~ 89 (514)
|+|++|+|||||+|+|++..... .....+++ ... .+... ...+.+|||||+..... ....++..+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI--VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc--cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCE
Confidence 58999999999999999876432 22223333 222 12222 66899999999876543 33457899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccce
Q 010254 90 VVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVK 169 (514)
Q Consensus 90 ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~ 169 (514)
+++|+|++......... +....... +.|+++|+||+|+........... ............+++++||+++.
T Consensus 79 il~v~~~~~~~~~~~~~--~~~~~~~~--~~~~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sa~~~~--- 150 (163)
T cd00880 79 ILFVVDADLRADEEEEK--LLELLRER--GKPVLLVLNKIDLLPEEEEEELLE-LRLLILLLLLGLPVIAVSALTGE--- 150 (163)
T ss_pred EEEEEeCCCCCCHHHHH--HHHHHHhc--CCeEEEEEEccccCChhhHHHHHH-HHHhhcccccCCceEEEeeeccC---
Confidence 99999999877665543 44444444 899999999999987521111100 01111122223389999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHH
Q 010254 170 CFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 170 ~f~~~l~~~~i~~L~~~i~~~ 190 (514)
|++++++.+.+.
T Consensus 151 ---------~v~~l~~~l~~~ 162 (163)
T cd00880 151 ---------GIDELREALIEA 162 (163)
T ss_pred ---------CHHHHHHHHHhh
Confidence 999999888754
No 323
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.68 E-value=3.8e-16 Score=142.17 Aligned_cols=116 Identities=20% Similarity=0.342 Sum_probs=88.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccccee--CCeeEEEEEeCCCCccchhhHHHhhhcc-CEEEEEE
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFY--PDRVPITIIDTPSSVEDRGKLGEELRRA-DAVVLTY 94 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a-d~ii~v~ 94 (514)
+|+|+|++|||||||+++|.+.++....++..+... ..... ..+..+.||||||+..+......+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~-~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVA-TFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecce-EEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 689999999999999999999876555444322211 11111 3467899999999999888888889998 9999999
Q ss_pred eCCCc-ccHHHHHHHHHHHHHh---cCCCCcEEEEEecccCccc
Q 010254 95 ACDRP-ETLDELSTFWLPELRR---LEVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 95 d~~~~-~s~~~~~~~~~~~l~~---~~~~~pvilv~NK~Dl~~~ 134 (514)
|+++. .++.....+|...+.. ..++.|+++|+||+|+...
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 99987 5677766655555432 2258999999999998765
No 324
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.68 E-value=8.7e-16 Score=134.59 Aligned_cols=115 Identities=26% Similarity=0.258 Sum_probs=91.3
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 450 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv 450 (514)
||+++|.+|||||||++++++.+.. .+.++.+. ....+.+. ...+.+||++|.+.+...+ ...++.+|++++|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~--~~~~~~~~--~~~~~i~D~~G~~~~~~~~--~~~~~~~~~~i~v 73 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGF--NVETVEYK--NVSFTVWDVGGQDKIRPLW--KHYYENTNGIIFV 73 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCc--ceEEEEEC--CEEEEEEECCCChhhHHHH--HHHhccCCEEEEE
Confidence 6899999999999999999999843 33344443 33444433 4567799999998888776 5788999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 451 HDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 451 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
||++++.++.....|+..+...... .+.|+++|+||+|+...
T Consensus 74 ~D~~~~~~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 74 VDSSDRERIEEAKEELHKLLNEEEL--KGVPLLIFANKQDLPGA 115 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhCccc--CCCcEEEEeeccCCccc
Confidence 9999999999999988887664322 27999999999998763
No 325
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.68 E-value=1.1e-15 Score=138.44 Aligned_cols=128 Identities=23% Similarity=0.269 Sum_probs=97.3
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.+||+++|++|||||||++++.+..+. .+.++.+.. ...+.+. ...+.+||++|++.+...+ ..+++++|+++
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~--~~~~~l~D~~G~~~~~~~~--~~~~~~ad~ii 91 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIG--NIKFKTFDLGGHEQARRLW--KDYFPEVDGIV 91 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEEC--CEEEEEEECCCCHHHHHHH--HHHhccCCEEE
Confidence 478999999999999999999998874 344554433 2344444 3566789999998887766 46789999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHH
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFT 506 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 506 (514)
+|+|+++..+|+....|+..+...... .+.|+++++||+|+.. .+...+.+++++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~--~~~pvivv~NK~Dl~~-~~~~~~~~~~~~ 146 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEEL--ANVPFLILGNKIDLPG-AVSEEELRQALG 146 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccc--cCCCEEEEEeCCCCCC-CcCHHHHHHHhC
Confidence 999999999999888888887654322 2699999999999864 344455555544
No 326
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.68 E-value=1.2e-16 Score=137.29 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=82.3
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCCh-----hHHHhhhcCccccccCc
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE-----EAVAKLLSNKDSLAACD 445 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~-----~~~~~~~~~~~~~~~~d 445 (514)
||+++|++|||||||+|+|.+..+. +.++.+. ... + .+|||+|. +.+..+. ..++++|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~-------~~~-~----~~iDt~G~~~~~~~~~~~~~---~~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV-------EYN-D----GAIDTPGEYVENRRLYSALI---VTAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeE-------EEc-C----eeecCchhhhhhHHHHHHHH---HHhhcCC
Confidence 7999999999999999999988763 3233222 222 1 46899997 2344433 3589999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCC-ccc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM-VLY 513 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~ 513 (514)
++++|||++++.++.. ..|... . ..|+++|+||+|+.......++..+++++.+. ++|
T Consensus 65 ~vilv~d~~~~~s~~~-~~~~~~----~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 123 (142)
T TIGR02528 65 VIALVQSATDPESRFP-PGFASI----F-----VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIF 123 (142)
T ss_pred EEEEEecCCCCCcCCC-hhHHHh----c-----cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEE
Confidence 9999999999988754 234322 1 35999999999997644555667788887765 443
No 327
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.68 E-value=7.4e-16 Score=141.09 Aligned_cols=122 Identities=19% Similarity=0.212 Sum_probs=88.0
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCCh---------hHHHhhhc
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE---------EAVAKLLS 436 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~---------~~~~~~~~ 436 (514)
.+..++|+++|++|||||||+|++++.++.....+..+.......+.++ +...+.+|||+|. +.+...
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~-- 114 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLP-DGREVLLTDTVGFIRDLPHQLVEAFRST-- 114 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEec-CCceEEEeCCCccccCCCHHHHHHHHHH--
Confidence 3456899999999999999999999987543333333334444555555 4446778999996 222222
Q ss_pred CccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 437 NKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 437 ~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
...+..+|++++|+|++++.++.....|...+..... .+.|+++|+||+|+...
T Consensus 115 -~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~---~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 115 -LEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGA---EDIPMILVLNKIDLLDD 168 (204)
T ss_pred -HHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc---CCCCEEEEEEccccCCh
Confidence 2346789999999999999888877777666655432 16899999999999764
No 328
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.68 E-value=1e-15 Score=135.52 Aligned_cols=155 Identities=21% Similarity=0.154 Sum_probs=97.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc-ceeCCeeEEEEEeCCCCccc----------hhhHHHhhh-
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE-DFYPDRVPITIIDTPSSVED----------RGKLGEELR- 85 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~-~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~~~- 85 (514)
.|+++|++|||||||+|+|++..+.....+... .|... .+.. ...+.+|||||+... ......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~-~t~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPG-KTQLINFFNV-NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCC-cceeEEEEEc-cCeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 489999999999999999996554333333322 23222 2222 238999999997542 122233333
Q ss_pred --ccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcc
Q 010254 86 --RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (514)
Q Consensus 86 --~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 163 (514)
..+++++++|.+...+.... ....++... +.|+++|+||+|+.................+......+++++||+
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDL--EMLDWLEEL--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHH--HHHHHHHHc--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence 46789999998765433322 245556555 689999999999965421111111122222211122378999999
Q ss_pred ccccceecCCCCChhhHHHHHHHHHHH
Q 010254 164 KQIQVKCFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 164 ~~~~~~~f~~~l~~~~i~~L~~~i~~~ 190 (514)
++. +++++++.|.+.
T Consensus 155 ~~~------------~~~~l~~~l~~~ 169 (170)
T cd01876 155 KGQ------------GIDELRALIEKW 169 (170)
T ss_pred CCC------------CHHHHHHHHHHh
Confidence 999 999999988764
No 329
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.68 E-value=1.2e-15 Score=141.66 Aligned_cols=112 Identities=18% Similarity=0.230 Sum_probs=82.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCC--------------Cccc---ccceeCCeeEEEEEeCCCCccchhh
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLP--------------PTRL---PEDFYPDRVPITIIDTPSSVEDRGK 79 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~-~~~~~~--------------~tt~---~~~~~~~~~~~~l~Dt~G~~~~~~~ 79 (514)
+|+|+|++|+|||||+++|+...-... ...... +.++ ...+..++.++.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999987431111 000001 1111 1233466789999999999998888
Q ss_pred HHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcc
Q 010254 80 LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD 133 (514)
Q Consensus 80 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~ 133 (514)
...+++.+|++++|+|++++..... ..+...+.+. ++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccC
Confidence 8889999999999999988655432 2366666665 899999999999875
No 330
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.68 E-value=7.2e-16 Score=142.95 Aligned_cols=121 Identities=26% Similarity=0.316 Sum_probs=103.9
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|.+..+...+.++.+..+........+......+|||+|+++|..++ ..++.+++++++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~--~~y~~~~~~~l~ 83 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLR--PEYYRGANGILI 83 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHH--HHHhcCCCEEEE
Confidence 899999999999999999999999999998888877776666666345667899999999999888 688899999999
Q ss_pred EEeCCC-hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 010254 450 VHDSSD-ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 495 (514)
Q Consensus 450 v~D~~~-~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 495 (514)
|||.++ ..+++....|...+..... ...|+++|+||+|+....
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~---~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAP---DDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCC---CCceEEEEecccccccch
Confidence 999999 5666667889888877653 259999999999998764
No 331
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.67 E-value=2.7e-16 Score=164.32 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=102.2
Q ss_pred cCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeCCeeEEEEEeCCCCccchhh------HHHhh--hccCEEE
Q 010254 23 GEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYPDRVPITIIDTPSSVEDRGK------LGEEL--RRADAVV 91 (514)
Q Consensus 23 G~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~--~~ad~ii 91 (514)
|+||||||||+|+|++.++ ..+..+++|+.. .+..++..+.+|||||++++... ...++ ..+|+++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~---~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI 77 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ---TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVV 77 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC---eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEE
Confidence 8999999999999999863 334466677443 34445678999999999765432 23333 4799999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceec
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCF 171 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f 171 (514)
+|+|+++.+. .. ++...+.+. ++|+++|+||+|+.+. +... ...+.+.+.++. +++++||++|.
T Consensus 78 ~VvDat~ler--~l--~l~~ql~~~--~~PiIIVlNK~Dl~~~-~~i~--~d~~~L~~~lg~--pvv~tSA~tg~----- 141 (591)
T TIGR00437 78 NVVDASNLER--NL--YLTLQLLEL--GIPMILALNLVDEAEK-KGIR--IDEEKLEERLGV--PVVPTSATEGR----- 141 (591)
T ss_pred EEecCCcchh--hH--HHHHHHHhc--CCCEEEEEehhHHHHh-CCCh--hhHHHHHHHcCC--CEEEEECCCCC-----
Confidence 9999886432 11 244445444 8999999999998654 2222 224556666654 89999999999
Q ss_pred CCCCChhhHHHHHHHHHHHh
Q 010254 172 NSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 172 ~~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++.+.+.+..
T Consensus 142 -------Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 142 -------GIERLKDAIRKAI 154 (591)
T ss_pred -------CHHHHHHHHHHHh
Confidence 8899988887654
No 332
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=3.3e-16 Score=132.92 Aligned_cols=166 Identities=14% Similarity=0.143 Sum_probs=122.2
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 11 ~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
-...+..+|+++|--|+||||++.+|-..++...++ +.+.-.- .+..+++++.+||.+|++..+..+..|+++.+++
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvP-TiGfnVE--~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVP-TIGFNVE--TVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEeeccCCcccCCC-cccccee--EEEEcceEEEEEecCCCcccccchhhhccCCcEE
Confidence 345678999999999999999999998887544422 1221111 2334589999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccce
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVK 169 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~ 169 (514)
|||+|.++++.+.+....+...+.... .+.|+++.+||.|+........+.+.. .+..--.....+-.|+|.+|+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L-~l~~l~~~~w~iq~~~a~~G~--- 164 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKL-GLHSLRSRNWHIQSTCAISGE--- 164 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHh-hhhccCCCCcEEeeccccccc---
Confidence 999999999999888876777666543 479999999999998762211111111 111000111257889999999
Q ss_pred ecCCCCChhhHHHHHHHHHHHhc
Q 010254 170 CFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 170 ~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|+.+-.+++.+.+.
T Consensus 165 ---------GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 165 ---------GLYEGLDWLSNNLK 178 (181)
T ss_pred ---------cHHHHHHHHHHHHh
Confidence 99988888887664
No 333
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.67 E-value=2e-15 Score=138.08 Aligned_cols=166 Identities=17% Similarity=0.168 Sum_probs=107.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC---------------CCccc-----cccee--------CCeeEEEEEe
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVL---------------PPTRL-----PEDFY--------PDRVPITIID 69 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~---------------~~tt~-----~~~~~--------~~~~~~~l~D 69 (514)
+|+|+|..++|||||+++|+...- .+.... .+.|+ ...+. ..++.+.+||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g--~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiD 79 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAG--IISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLID 79 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC--CCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEEC
Confidence 699999999999999999986431 111000 11111 11222 2278899999
Q ss_pred CCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchh----------
Q 010254 70 TPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVS---------- 139 (514)
Q Consensus 70 t~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~---------- 139 (514)
|||++++......+++.+|++++|+|++.+.+.+... ++...... ++|+++|+||+|+....+...
T Consensus 80 TPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~--~l~~~~~~--~~p~ilviNKiD~~~~e~~~~~~~~~~~~~~ 155 (222)
T cd01885 80 SPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET--VLRQALKE--RVKPVLVINKIDRLILELKLSPEEAYQRLAR 155 (222)
T ss_pred CCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEECCCcchhhhcCCHHHHHHHHHH
Confidence 9999999999999999999999999999877665433 44444443 689999999999862211111
Q ss_pred HhhhhHHHHHHHh------------cc----CcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 140 LEQVMMPIMQQFR------------EI----ETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 140 ~~~~~~~~~~~~~------------~~----~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
.-+.+..+...+. .+ +++...||+.|....+ -+-..+-.|++.|.+++|.
T Consensus 156 ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~----~~f~~~~~~~~~~~~~~~~ 221 (222)
T cd01885 156 IIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTI----IKFARIYAVLEMVVKHLPS 221 (222)
T ss_pred HHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEecc----ccccchHHHHHHHHhhCCC
Confidence 1112222222221 01 1377888998874411 1222667888888888774
No 334
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.67 E-value=8.8e-16 Score=135.88 Aligned_cols=115 Identities=23% Similarity=0.310 Sum_probs=87.2
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCC------CCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccC
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFS------DNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAAC 444 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~ 444 (514)
+|+++|++|||||||+++|.+.... ..+.++.+..+ ..+.++ ...+.+|||+|++.+..++ ...++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~--~~~~~~~ 74 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLW--DKYYAEC 74 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHH--HHHhCCC
Confidence 4899999999999999999864321 12223434333 334433 4677789999998888766 5678999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 445 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 445 d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
|++++|+|+++.+++.....|+..+...... .++|+++|+||+|+..
T Consensus 75 ~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 75 HAIIYVIDSTDRERFEESKSALEKVLRNEAL--EGVPLLILANKQDLPD 121 (167)
T ss_pred CEEEEEEECchHHHHHHHHHHHHHHHhChhh--cCCCEEEEEEcccccc
Confidence 9999999999999999988888877654221 2699999999999865
No 335
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.67 E-value=7.4e-16 Score=155.04 Aligned_cols=166 Identities=14% Similarity=0.131 Sum_probs=106.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccc-----------------------eeC------CeeE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPED-----------------------FYP------DRVP 64 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~-----------------------~~~------~~~~ 64 (514)
+..++|+++|.+++|||||+++|.+............+.|+... ... ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 46799999999999999999999764221111111111111110 001 2467
Q ss_pred EEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhh
Q 010254 65 ITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPE-TLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQV 143 (514)
Q Consensus 65 ~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~ 143 (514)
+.+|||||++++...+...+..+|++++|+|++++. ..+..+ .+..+.... .+|+++|+||+|+.+........+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e--~l~~l~~~g-i~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKE--HLMALEIIG-IKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHH--HHHHHHHcC-CCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999998888888888999999999998653 222211 223333331 3579999999999764211111112
Q ss_pred hHHHHHHHh-ccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 144 MMPIMQQFR-EIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 144 ~~~~~~~~~-~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
+..+..... ...+++++||++|. |+++|++.|...++..
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~------------gi~~L~e~L~~~l~~~ 198 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNA------------NIDALLEAIEKFIPTP 198 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCC------------ChHHHHHHHHHhCCCC
Confidence 222222221 11278999999999 9999999999877643
No 336
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.67 E-value=7.5e-16 Score=136.75 Aligned_cols=135 Identities=19% Similarity=0.075 Sum_probs=89.9
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhH----HHhhh-cCccccccCc
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA----VAKLL-SNKDSLAACD 445 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~----~~~~~-~~~~~~~~~d 445 (514)
.|+++|++|||||||+|+|.+.+......+..+....+..+... +...+.+|||+|... ...+. .....+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVD-DGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcC-CCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 48999999999999999999876532222223333333444444 444677899999531 11111 0012345799
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHH
Q 010254 446 IAVFVHDSSDE-SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTF 507 (514)
Q Consensus 446 ~vilv~D~~~~-~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 507 (514)
++++|+|++++ ++++.+..|+..+...... ..+.|+++|+||+|+............+.++
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~ 142 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPE-LLEKPRIVVLNKIDLLDEEELFELLKELLKE 142 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCcc-ccccccEEEEEchhcCCchhhHHHHHHHHhh
Confidence 99999999999 8999999998887765321 1268999999999997644333444445554
No 337
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.67 E-value=1.9e-16 Score=135.05 Aligned_cols=133 Identities=14% Similarity=0.105 Sum_probs=89.9
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChh------HHHhhhcCcccccc
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEE------AVAKLLSNKDSLAA 443 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~------~~~~~~~~~~~~~~ 443 (514)
++|+++|.||||||||+|+|+|.+......|..|.+.....+.+. + ..+.++|++|.- ....+........+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~-~-~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLG-D-QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEET-T-EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEec-C-ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 589999999999999999999999665555666666665566665 3 667788999921 11122211112368
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 444 CDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 444 ~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
.|+++.|.|+++.+.- .....++... ++|+++|.||+|+..++....+...+++.+|++.+
T Consensus 79 ~D~ii~VvDa~~l~r~---l~l~~ql~e~------g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi 139 (156)
T PF02421_consen 79 PDLIIVVVDATNLERN---LYLTLQLLEL------GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVI 139 (156)
T ss_dssp SSEEEEEEEGGGHHHH---HHHHHHHHHT------TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EE
T ss_pred CCEEEEECCCCCHHHH---HHHHHHHHHc------CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEE
Confidence 9999999999875432 2334444444 69999999999998866555568889999998754
No 338
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.67 E-value=1.9e-15 Score=131.99 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=58.6
Q ss_pred HHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEc
Q 010254 81 GEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIEC 160 (514)
Q Consensus 81 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (514)
...++++|++++|+|+.++..... ..+...+.....++|+++|+||+|+.+. .........+.+.+.. .++.+
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~---~~~~~~~~~~~~~~~~--~~~~i 75 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPT---WVTARWVKILSKEYPT--IAFHA 75 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCH---HHHHHHHHHHhcCCcE--EEEEe
Confidence 356889999999999988643222 1255555544336899999999999754 1112222222222211 25789
Q ss_pred CccccccceecCCCCChhhHHHHHHHHHH
Q 010254 161 SALKQIQVKCFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 161 Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~ 189 (514)
||+++. |++.|.+.+.+
T Consensus 76 Sa~~~~------------~~~~L~~~l~~ 92 (157)
T cd01858 76 SINNPF------------GKGSLIQLLRQ 92 (157)
T ss_pred eccccc------------cHHHHHHHHHH
Confidence 999998 88888777754
No 339
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.67 E-value=1.5e-15 Score=132.84 Aligned_cols=115 Identities=21% Similarity=0.281 Sum_probs=93.1
Q ss_pred EEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEEE
Q 010254 372 CFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVH 451 (514)
Q Consensus 372 i~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~ 451 (514)
|+++|++|||||||+++|.+.++...+.++.+..+. .+.. +...+.+||++|.+.+...+ ..+++.+|++++|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~--~~~~~~~d~ii~v~ 75 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTK--GNVTLKVWDLGGQPRFRSMW--ERYCRGVNAIVYVV 75 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHH--HHHHhcCCEEEEEE
Confidence 789999999999999999999998877776665443 3333 33667799999998888776 57789999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 452 DSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 452 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
|+++..++.....|+..+...... .++|+++|+||+|+...
T Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 76 DAADRTALEAAKNELHDLLEKPSL--EGIPLLVLGNKNDLPGA 116 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHcChhh--cCCCEEEEEeCccccCC
Confidence 999999998888887776553211 26899999999998753
No 340
>COG2262 HflX GTPases [General function prediction only]
Probab=99.67 E-value=9.8e-16 Score=146.10 Aligned_cols=157 Identities=19% Similarity=0.201 Sum_probs=113.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCcccccceeCCeeEEEEEeCCCCccchh--------hHHHhh
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPAN--VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRG--------KLGEEL 84 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~--~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~ 84 (514)
.-..|+++|-+|+|||||+|+|++...... .-.+..+||....+.. +.++.+.||.|+.+.-. .+-+..
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 347899999999999999999998764322 3344455554444433 78899999999864321 123457
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcc
Q 010254 85 RRADAVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (514)
Q Consensus 85 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 163 (514)
.+||+++.|+|++++...+.+.. ....+.... .++|+|+|.||+|+..+. . ......... ...+.+||+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v~NKiD~~~~~------~-~~~~~~~~~--~~~v~iSA~ 339 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEA-VEDVLAEIGADEIPIILVLNKIDLLEDE------E-ILAELERGS--PNPVFISAK 339 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEEEecccccCch------h-hhhhhhhcC--CCeEEEEec
Confidence 89999999999999976666654 666666653 469999999999988761 1 111122211 158999999
Q ss_pred ccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 164 KQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 164 ~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
+|. |++.|++.|...++..
T Consensus 340 ~~~------------gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 340 TGE------------GLDLLRERIIELLSGL 358 (411)
T ss_pred cCc------------CHHHHHHHHHHHhhhc
Confidence 999 9999999999988754
No 341
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.67 E-value=1.3e-15 Score=159.26 Aligned_cols=158 Identities=19% Similarity=0.172 Sum_probs=111.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC--CC-----CCCCCC-----CCCcccc-----cce---eCCeeEEEEEeCCCCccc
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADT--FP-----ANVPPV-----LPPTRLP-----EDF---YPDRVPITIIDTPSSVED 76 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~--~~-----~~~~~~-----~~~tt~~-----~~~---~~~~~~~~l~Dt~G~~~~ 76 (514)
-+|+|+|+.++|||||+++|+... +. ..+... ..+.|+. ..+ +.+.+.+.||||||+.++
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 489999999999999999998632 10 111110 1122221 122 234688999999999999
Q ss_pred hhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhcc-C
Q 010254 77 RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI-E 155 (514)
Q Consensus 77 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~ 155 (514)
...+..+++.+|++|+|+|++++...+.... |..... . ++|+++|+||+|+... . .+....++.+.++.. .
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~-~~~~~~-~--~lpiIvViNKiDl~~a-~---~~~v~~ei~~~lg~~~~ 159 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLALE-N--DLEIIPVLNKIDLPAA-D---PERVKQEIEDVIGIDAS 159 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHH-C--CCCEEEEEECCCCCcc-c---HHHHHHHHHHHhCCCcc
Confidence 8888899999999999999998766665543 544332 3 7899999999998653 1 122223344444321 2
Q ss_pred cEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 156 TCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 156 ~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
.++++||++|. |+++|++.|.+.+|..
T Consensus 160 ~vi~iSAktG~------------GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 160 DAVLVSAKTGI------------GIEEVLEAIVERIPPP 186 (600)
T ss_pred eEEEEecCCCC------------CHHHHHHHHHHhCccc
Confidence 48999999999 9999999999988754
No 342
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.66 E-value=1.8e-15 Score=139.15 Aligned_cols=168 Identities=17% Similarity=0.116 Sum_probs=107.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------CC-----CCCCcccc-----cce---eCCeeEEEEEeCCCC
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANV-----------PP-----VLPPTRLP-----EDF---YPDRVPITIIDTPSS 73 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~-----------~~-----~~~~tt~~-----~~~---~~~~~~~~l~Dt~G~ 73 (514)
+|+|+|++|+|||||+++|+........ .. ...+.++. ..+ ....+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999976532210 00 00111111 011 134688999999999
Q ss_pred ccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc-------ccchhHh---hh
Q 010254 74 VEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE-------NQQVSLE---QV 143 (514)
Q Consensus 74 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~-------~~~~~~~---~~ 143 (514)
.++......++..+|++++|+|++...+.... .++..+... ++|+++|+||+|+... ....... +.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~--~~~~~~~~~--~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~ 157 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE--RLIRHAILE--GLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDE 157 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCcccccCCHHHHHHHHHHHHHH
Confidence 99888888899999999999999877665432 255555444 6999999999998621 0111111 22
Q ss_pred hHHHHHHHhc---------cCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 144 MMPIMQQFRE---------IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 144 ~~~~~~~~~~---------~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
+..+...+.. -.++++.||+.+..+.+- +-.++..|.+.|.+.+|.
T Consensus 158 ~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~----~~~~~~~~~~~~~~~~~~ 212 (213)
T cd04167 158 VNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLE----SFAKKYGLVDSIVSNIPS 212 (213)
T ss_pred HHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecH----HHHhhhhHHHHHHhhCCC
Confidence 3333433321 013788999988755220 113566777777776653
No 343
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.66 E-value=1.3e-15 Score=149.26 Aligned_cols=119 Identities=20% Similarity=0.218 Sum_probs=89.7
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCCh---------hHHHhhhcCc
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE---------EAVAKLLSNK 438 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~---------~~~~~~~~~~ 438 (514)
..++|+++|.+|||||||+|+|++.+......+..|.+.....+.++ +...+.+|||+|. +.|.+. .
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~-~~~~i~l~DT~G~~~~l~~~lie~f~~t---l 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLP-DGGEVLLTDTVGFIRDLPHELVAAFRAT---L 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeC-CCceEEEEecCcccccCCHHHHHHHHHH---H
Confidence 55899999999999999999999988544443445556666777776 3456778999996 334332 3
Q ss_pred cccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 439 DSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 439 ~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
..+.++|++++|+|++++.+++.+..|...+..... .+.|+++|+||+|+..
T Consensus 264 e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~---~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 264 EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGA---EDIPQLLVYNKIDLLD 315 (351)
T ss_pred HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc---CCCCEEEEEEeecCCC
Confidence 467899999999999999888777666554444321 2689999999999965
No 344
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.66 E-value=1.2e-15 Score=142.34 Aligned_cols=93 Identities=16% Similarity=0.197 Sum_probs=67.7
Q ss_pred ccchhhHHHhhhccCEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHh
Q 010254 74 VEDRGKLGEELRRADAVVLTYACDRPE-TLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR 152 (514)
Q Consensus 74 ~~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 152 (514)
+++....+.+++++|.+++|+|++++. ++..++. |+..+... ++|+++|+||+||.+. +... .+....+ ..++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r-~l~~~~~~--~i~~vIV~NK~DL~~~-~~~~-~~~~~~~-~~~g 97 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDR-FLVVAEAQ--NIEPIIVLNKIDLLDD-EDME-KEQLDIY-RNIG 97 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHH-HHHHHHHC--CCCEEEEEECcccCCC-HHHH-HHHHHHH-HHCC
Confidence 455555667899999999999999877 7888875 88777654 8999999999999754 2221 1222222 2332
Q ss_pred ccCcEEEcCccccccceecCCCCChhhHHHHHHH
Q 010254 153 EIETCIECSALKQIQVKCFNSPLQPSEIVGVKRV 186 (514)
Q Consensus 153 ~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~ 186 (514)
.+++++||++|. |+++|++.
T Consensus 98 --~~v~~~SAktg~------------gi~eLf~~ 117 (245)
T TIGR00157 98 --YQVLMTSSKNQD------------GLKELIEA 117 (245)
T ss_pred --CeEEEEecCCch------------hHHHHHhh
Confidence 279999999999 88877543
No 345
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.66 E-value=1.6e-15 Score=124.93 Aligned_cols=116 Identities=19% Similarity=0.304 Sum_probs=96.4
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.++|+|+|..|+||||++++|.+...... .|+.+ |.++++.+. .....+||-.|+..+++.| +.++..+|++|
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i-~pt~g--f~Iktl~~~--~~~L~iwDvGGq~~lr~~W--~nYfestdglI 88 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTI-SPTLG--FQIKTLEYK--GYTLNIWDVGGQKTLRSYW--KNYFESTDGLI 88 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCcccc-CCccc--eeeEEEEec--ceEEEEEEcCCcchhHHHH--HHhhhccCeEE
Confidence 68999999999999999999999884333 35555 777887765 4566789999999999999 78999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
+|+|++|+.++++....+..+... ++..+.|+++++||.|+..
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~e--erlaG~~~Lvlank~dl~~ 131 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVE--ERLAGAPLLVLANKQDLPG 131 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhh--hhhcCCceEEEEecCcCcc
Confidence 999999999999988877775542 2234799999999999983
No 346
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.65 E-value=5.1e-15 Score=142.41 Aligned_cols=77 Identities=26% Similarity=0.377 Sum_probs=53.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccc--------------------------ee-CCeeEEEEEeCC
Q 010254 19 IVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPED--------------------------FY-PDRVPITIIDTP 71 (514)
Q Consensus 19 I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~--------------------------~~-~~~~~~~l~Dt~ 71 (514)
|+|+|.||||||||||+|++.+.. +...+.+|+... .+ ...+++.+||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~---~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~a 77 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVE---IANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVA 77 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCc---ccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECC
Confidence 689999999999999999998742 222333331111 11 134789999999
Q ss_pred CCc----cchhhHH---HhhhccCEEEEEEeCCC
Q 010254 72 SSV----EDRGKLG---EELRRADAVVLTYACDR 98 (514)
Q Consensus 72 G~~----~~~~~~~---~~~~~ad~ii~v~d~~~ 98 (514)
|+. ++..... ..+++||++++|+|+..
T Consensus 78 Glv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 78 GLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 983 3333333 35999999999999973
No 347
>PRK12735 elongation factor Tu; Reviewed
Probab=99.65 E-value=2.5e-15 Score=150.74 Aligned_cols=176 Identities=15% Similarity=0.126 Sum_probs=114.6
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcC------CCCCC-------CCCCCCCcccc---cceeCCeeEEEEEeCCCCcc
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAAD------TFPAN-------VPPVLPPTRLP---EDFYPDRVPITIIDTPSSVE 75 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~------~~~~~-------~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~ 75 (514)
..+..++|+++|++|+|||||+++|++. .-... ......++|+. ..+..++..+.++||||+++
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 3467799999999999999999999962 10000 01112334422 23445567899999999988
Q ss_pred chhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEE-EEEecccCcccc-cchhHhhhhHHHHHHHhc
Q 010254 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVI-VVGCKLDLRDEN-QQVSLEQVMMPIMQQFRE 153 (514)
Q Consensus 76 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvi-lv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 153 (514)
+.......+..+|++++|+|+..+...+... .+..+... ++|.+ +|+||+|+.+.. ......+.+..+.+.++.
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~qt~e--~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~ 163 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQTRE--HILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchhHHH--HHHHHHHc--CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence 7777777888999999999998754433322 44555555 78865 579999997531 112222234445555432
Q ss_pred ---cCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 154 ---IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 154 ---~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
..+++++||++|.|...- .--..++..|++.|.+.++.
T Consensus 164 ~~~~~~ii~~Sa~~g~n~~~~--~~w~~~~~~Ll~~l~~~~~~ 204 (396)
T PRK12735 164 PGDDTPIIRGSALKALEGDDD--EEWEAKILELMDAVDSYIPE 204 (396)
T ss_pred CcCceeEEecchhccccCCCC--CcccccHHHHHHHHHhcCCC
Confidence 137899999999764110 11123788999999887653
No 348
>PRK12736 elongation factor Tu; Reviewed
Probab=99.65 E-value=2.6e-15 Score=150.46 Aligned_cols=173 Identities=17% Similarity=0.181 Sum_probs=114.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCC-------------CCCCCCCCcccc---cceeCCeeEEEEEeCCCCccc
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPA-------------NVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVED 76 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~-------------~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~ 76 (514)
.+..++|+++|++++|||||+++|++..... .......++|+. ..+..++..+.++||||++++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 4667999999999999999999998632100 000112344422 234455678999999999888
Q ss_pred hhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCccccc-chhHhhhhHHHHHHHhc-
Q 010254 77 RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLDLRDENQ-QVSLEQVMMPIMQQFRE- 153 (514)
Q Consensus 77 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~- 153 (514)
.......+..+|++++|+|++.+...+... .+..+... ++| +|+|+||+|+.++.. .....+.+..+...++.
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~~--~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQTRE--HILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHHH--HHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 777777788999999999998754433332 55556655 778 678999999975311 11122234444444432
Q ss_pred --cCcEEEcCccccccc-eecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 154 --IETCIECSALKQIQV-KCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 154 --~~~~i~~Sa~~~~~~-~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
..+++++||++|.+. ..+ ..++..|++.+.+.++..
T Consensus 165 ~~~~~ii~vSa~~g~~~~~~~-----~~~i~~Ll~~l~~~lp~~ 203 (394)
T PRK12736 165 GDDIPVIRGSALKALEGDPKW-----EDAIMELMDAVDEYIPTP 203 (394)
T ss_pred cCCccEEEeeccccccCCCcc-----hhhHHHHHHHHHHhCCCC
Confidence 137999999998422 111 127889999999887643
No 349
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.64 E-value=3.4e-15 Score=155.52 Aligned_cols=170 Identities=16% Similarity=0.157 Sum_probs=116.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC--CCCCCC-CC----------CCCCcccc---cceeCCeeEEEEEeCCCCccchhhHH
Q 010254 18 RIVVCGEKGTGKSSLIVTAAAD--TFPANV-PP----------VLPPTRLP---EDFYPDRVPITIIDTPSSVEDRGKLG 81 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~--~~~~~~-~~----------~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~~~~ 81 (514)
+|+|+|+.++|||||+++|+.. .+.... +. ...+.|+. ..+.++++.+.||||||+.++.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 6999999999999999999863 221110 00 01123322 23456789999999999999988889
Q ss_pred HhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc-----cCc
Q 010254 82 EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE-----IET 156 (514)
Q Consensus 82 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-----~~~ 156 (514)
.+++.+|++++|+|++++...+.. .|+..+... ++|+|+|+||+|+... +.....+.+..+...++. ..+
T Consensus 83 ~~l~~aD~alLVVDa~~G~~~qT~--~~l~~a~~~--~ip~IVviNKiD~~~a-~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGPMPQTR--FVLKKALEL--GLKPIVVINKIDRPSA-RPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHhCCEEEEEEeCCCCCcHHHH--HHHHHHHHC--CCCEEEEEECCCCCCc-CHHHHHHHHHHHHHhhccccccccCc
Confidence 999999999999999875433322 366666666 7999999999998654 222222222333322211 127
Q ss_pred EEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 157 CIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 157 ~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
++.+||++|.+..-... ...|++.|++.|.+.+|..
T Consensus 158 vl~~SA~~g~~~~~~~~--~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 158 IVYASGRAGWASLDLDD--PSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred EEechhhcCcccccCcc--cccCHHHHHHHHHHhCCCC
Confidence 89999999974421111 2348999999999999865
No 350
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.64 E-value=2e-15 Score=143.99 Aligned_cols=130 Identities=15% Similarity=0.205 Sum_probs=90.8
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHH----Hh-hh-cCccccccC
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV----AK-LL-SNKDSLAAC 444 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~----~~-~~-~~~~~~~~~ 444 (514)
+|+++|+||||||||+|+|++.+...++..+.+++..+..+... +.....+|||+|.... .. +. .....++.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 58999999999999999999999887776666666666666555 3345778999995321 11 11 124567899
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcC
Q 010254 445 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV 509 (514)
Q Consensus 445 d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 509 (514)
|++++|+|+++..+.+ ..++..+... +.|+++|+||+|+...........+++...+
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~~------~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~ 137 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQNL------KRPVVLTRNKLDNKFKDKLLPLIDKYAILED 137 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHhc------CCCEEEEEECeeCCCHHHHHHHHHHHHhhcC
Confidence 9999999999876654 3333334332 6999999999999753333344445554443
No 351
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.64 E-value=2.4e-15 Score=136.95 Aligned_cols=121 Identities=22% Similarity=0.317 Sum_probs=88.1
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccC-cEEEE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAAC-DIAVF 449 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~-d~vil 449 (514)
+|+++|++|||||||+++|....+..++.++ +...........+....+.+||++|++++...+ ..+++.+ +++|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~--~~~~~~~~~~vV~ 78 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKL--LETLKNSAKGIVF 78 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHH--HHHHhccCCEEEE
Confidence 5899999999999999999999877665332 222222222211234567799999999887766 5678888 99999
Q ss_pred EEeCCCh-hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 450 VHDSSDE-SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 450 v~D~~~~-~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
|+|+++. .++.....|+..+........+++|+++|+||+|+...
T Consensus 79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9999998 77888877776654322111137999999999998754
No 352
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.64 E-value=1.5e-15 Score=140.08 Aligned_cols=148 Identities=18% Similarity=0.075 Sum_probs=92.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC----------------------------CCCCCCCCcc---cccceeCCeeEEE
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPA----------------------------NVPPVLPPTR---LPEDFYPDRVPIT 66 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~----------------------------~~~~~~~~tt---~~~~~~~~~~~~~ 66 (514)
+|+|+|++++|||||+.+|+...-.. .......++| ....+...+.++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 48999999999999999997421000 0000122333 2224456788999
Q ss_pred EEeCCCCccchhhHHHhhhccCEEEEEEeCCCcc-------cHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc-cch
Q 010254 67 IIDTPSSVEDRGKLGEELRRADAVVLTYACDRPE-------TLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-QQV 138 (514)
Q Consensus 67 l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~-------s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~-~~~ 138 (514)
+|||||+..+.......++.+|++++|+|++++. ..+... ........ ..+|+++|+||+|+.... ...
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTRE--HALLARTL-GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHH--HHHHHHHc-CCCeEEEEEEccccccccccHH
Confidence 9999999877776777788999999999998742 112121 22223333 136899999999997320 111
Q ss_pred hHhhhhHH---HHHHHhc---cCcEEEcCccccccc
Q 010254 139 SLEQVMMP---IMQQFRE---IETCIECSALKQIQV 168 (514)
Q Consensus 139 ~~~~~~~~---~~~~~~~---~~~~i~~Sa~~~~~~ 168 (514)
..++.... +.+.++. ..++++|||++|.|+
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi 193 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNL 193 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCC
Confidence 12222222 3333321 126999999999965
No 353
>COG1159 Era GTPase [General function prediction only]
Probab=99.64 E-value=1.3e-15 Score=139.64 Aligned_cols=119 Identities=19% Similarity=0.308 Sum_probs=92.6
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhH----HHhhh--cCcccccc
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA----VAKLL--SNKDSLAA 443 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~----~~~~~--~~~~~~~~ 443 (514)
--|+|+|+||||||||+|+++|.+.+.+++.+.||+..+..+... +....+++||+|-.+ +...+ .+...+..
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~d 85 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSALKD 85 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhcc
Confidence 458999999999999999999999999999999999999988887 455566779999211 11111 23578899
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc
Q 010254 444 CDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM 496 (514)
Q Consensus 444 ~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 496 (514)
+|+++||.|+++. +..-+.++.+..... +.|++++.||+|......
T Consensus 86 vDlilfvvd~~~~--~~~~d~~il~~lk~~-----~~pvil~iNKID~~~~~~ 131 (298)
T COG1159 86 VDLILFVVDADEG--WGPGDEFILEQLKKT-----KTPVILVVNKIDKVKPKT 131 (298)
T ss_pred CcEEEEEEecccc--CCccHHHHHHHHhhc-----CCCeEEEEEccccCCcHH
Confidence 9999999999986 555555554433332 689999999999887654
No 354
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.64 E-value=1.3e-15 Score=153.74 Aligned_cols=130 Identities=18% Similarity=0.183 Sum_probs=91.6
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCc-cEEEEEEECCCCcEEEEEEecCChhHHHhh------hcCccc
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDE-RYAVNVVDQPGGTKKTVVLREIPEEAVAKL------LSNKDS 440 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~------~~~~~~ 440 (514)
..+||+++|+||||||||+|+|++..+..+...++++ ++....+.++ + ..+.+|||+|.+.+... .....+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~-g-~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN-G-ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC-C-EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 4589999999999999999999998765555444443 3334455554 3 34578999997443221 123467
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCcc
Q 010254 441 LAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVL 512 (514)
Q Consensus 441 ~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 512 (514)
++.+|++++|||++++.+++.. |+..+... +.|+++|+||+|+... +..++++.+++++
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~~------~~piIlV~NK~Dl~~~-----~~~~~~~~~~~~~ 338 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNKS------KKPFILVLNKIDLKIN-----SLEFFVSSKVLNS 338 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhhC------CCCEEEEEECccCCCc-----chhhhhhhcCCce
Confidence 8899999999999998877665 66655432 6899999999998653 2344566665554
No 355
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.64 E-value=2.1e-15 Score=124.69 Aligned_cols=104 Identities=26% Similarity=0.370 Sum_probs=74.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeCCeeEEEEEeCCCCccchh---------hHHHhhh
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYPDRVPITIIDTPSSVEDRG---------KLGEELR 85 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~~~~~~~l~Dt~G~~~~~~---------~~~~~~~ 85 (514)
+|+|+|.+|||||||+|+|++.+ ...++..+++|... .+...+..+.++||||+..... .....+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~--~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK--LAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST--SSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccc--cccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 69999999999999999999876 33344445555333 2335677889999999864321 1233458
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEec
Q 010254 86 RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCK 128 (514)
Q Consensus 86 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK 128 (514)
.+|++++|+|++.+.. .....++.+++ . ++|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~--~~~~~~~~~l~-~--~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT--EDDKNILRELK-N--KKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH--HHHHHHHHHHH-T--TSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC--HHHHHHHHHHh-c--CCCEEEEEcC
Confidence 9999999999776322 22223666665 3 8999999998
No 356
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=99.64 E-value=7.4e-16 Score=115.60 Aligned_cols=87 Identities=56% Similarity=1.011 Sum_probs=82.8
Q ss_pred CCCChhhHHHHHHHHHHHhcCcccCCCcchhhHHHHHHHHHhcCCcchhhHHHhhccCCCccccccCCCCCCCccCCCCC
Q 010254 173 SPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLADELIPYSAFKRAPDQ 252 (514)
Q Consensus 173 ~~l~~~~i~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (514)
.+|+++.+.+++..+.+.++++..++++|+.||++++++|++|||++++|.+||+|+|++++.+.+++++. .++.++++
T Consensus 2 ~pL~~~el~~ik~~v~~~~~~gv~~~GiT~~GFl~L~~lfierGR~ETtW~vLR~FgY~d~L~L~d~~l~p-~l~v~~~~ 80 (89)
T PF08356_consen 2 KPLQPQELEDIKKVVRENIPDGVNDNGITLDGFLFLNKLFIERGRHETTWTVLRKFGYDDDLSLSDDFLYP-KLDVPPDQ 80 (89)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcCCCccchhhHHHHHHHHHHhCcchHHHHHHHHcCCCCcceeccccCCC-CccCCCCC
Confidence 57888999999999999999999999999999999999999999999999999999999999999999954 79999999
Q ss_pred ceecChhH
Q 010254 253 SVELTNEA 260 (514)
Q Consensus 253 ~~elt~~~ 260 (514)
+.|||+.+
T Consensus 81 svELS~~g 88 (89)
T PF08356_consen 81 SVELSPEG 88 (89)
T ss_pred eeecCcCc
Confidence 99999875
No 357
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.64 E-value=5.5e-15 Score=153.97 Aligned_cols=115 Identities=21% Similarity=0.200 Sum_probs=78.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC----CCCCccccccee----C---C-------eeEEEEEeCCCCcc
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPP----VLPPTRLPEDFY----P---D-------RVPITIIDTPSSVE 75 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~----~~~~tt~~~~~~----~---~-------~~~~~l~Dt~G~~~ 75 (514)
.+...|+|+|++|+|||||+|+|.+..+...... ..+.+..+.... . . -..+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 3456799999999999999999987654322221 111111111110 0 0 01278999999999
Q ss_pred chhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCc
Q 010254 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLR 132 (514)
Q Consensus 76 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~ 132 (514)
+...+...++.+|++++|+|++++...+... .+..++.. ++|+++++||+|+.
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e--~i~~~~~~--~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIE--AINILKRR--KTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHH--HHHHHHHc--CCCEEEEEECcCCc
Confidence 9888888889999999999998743333222 33344444 79999999999985
No 358
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.64 E-value=3.1e-15 Score=124.35 Aligned_cols=136 Identities=24% Similarity=0.329 Sum_probs=91.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCcc----chhhHHHhhhccCEEEEE
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVE----DRGKLGEELRRADAVVLT 93 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~~~ad~ii~v 93 (514)
||+++|+.++|||||+++|.+.+. .+.. |-...+. =.++||||-.- +...+.....+||+|++|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~K-----Tq~i~~~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll 70 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKK-----TQAIEYY-----DNTIDTPGEYIENPRFYHALIVTAQDADVVLLL 70 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCc-----cceeEec-----ccEEECChhheeCHHHHHHHHHHHhhCCEEEEE
Confidence 799999999999999999999772 2221 1111221 24599999431 112233446799999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCC
Q 010254 94 YACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNS 173 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~ 173 (514)
.|++++.+.-. +.+.... ++|||-|+||+|+..+. ...+. ...+.+.- +...+|++|+.+|+
T Consensus 71 ~dat~~~~~~p------P~fa~~f-~~pvIGVITK~Dl~~~~--~~i~~-a~~~L~~a-G~~~if~vS~~~~e------- 132 (143)
T PF10662_consen 71 QDATEPRSVFP------PGFASMF-NKPVIGVITKIDLPSDD--ANIER-AKKWLKNA-GVKEIFEVSAVTGE------- 132 (143)
T ss_pred ecCCCCCccCC------chhhccc-CCCEEEEEECccCccch--hhHHH-HHHHHHHc-CCCCeEEEECCCCc-------
Confidence 99998755322 2222222 68999999999998431 22222 22333333 34578999999999
Q ss_pred CCChhhHHHHHHHHH
Q 010254 174 PLQPSEIVGVKRVVQ 188 (514)
Q Consensus 174 ~l~~~~i~~L~~~i~ 188 (514)
|+++|++.|.
T Consensus 133 -----Gi~eL~~~L~ 142 (143)
T PF10662_consen 133 -----GIEELKDYLE 142 (143)
T ss_pred -----CHHHHHHHHh
Confidence 9999998875
No 359
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=4.2e-15 Score=134.15 Aligned_cols=168 Identities=18% Similarity=0.177 Sum_probs=115.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCcccccceeCCeeEEEEEeCCCCccch-------hhHHHh
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN--VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDR-------GKLGEE 83 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~--~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~ 83 (514)
...+++|+|+|.+|||||||||+|+.++.... .....+.++. .....++..++||||||.++.. .....+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~-~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTR-LRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhh-HHhhccccceEEecCCCcccchhhhHHHHHHHHHH
Confidence 45789999999999999999999997763222 1111111221 1122334779999999998743 345677
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc-------------cchhHhhhhHHHHHH
Q 010254 84 LRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-------------QQVSLEQVMMPIMQQ 150 (514)
Q Consensus 84 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~ 150 (514)
+.+.|++++++++.++.--.+.+ ++..+.....++|+++++|.+|..... -..-.++..+.+.+.
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~--f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDED--FLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhhccEEEEeccCCCccccCCHH--HHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999998876433333 444444444469999999999965431 112223334445555
Q ss_pred HhccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCcc
Q 010254 151 FREIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREGV 195 (514)
Q Consensus 151 ~~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~ 195 (514)
+....|++.+|...+- |++.|...+...+|...
T Consensus 193 ~q~V~pV~~~~~r~~w------------gl~~l~~ali~~lp~e~ 225 (296)
T COG3596 193 FQEVKPVVAVSGRLPW------------GLKELVRALITALPVEA 225 (296)
T ss_pred HhhcCCeEEeccccCc------------cHHHHHHHHHHhCcccc
Confidence 5556688999988888 99999999999998543
No 360
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.63 E-value=1.9e-15 Score=153.52 Aligned_cols=175 Identities=17% Similarity=0.090 Sum_probs=107.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCC--CCCC--------------------------CCCCCCCcccc---cceeCC
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADT--FPAN--------------------------VPPVLPPTRLP---EDFYPD 61 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~--~~~~--------------------------~~~~~~~tt~~---~~~~~~ 61 (514)
.+..++|+|+|+.++|||||+++|+... .... ......++|+. ..+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 4567999999999999999999998632 1100 00012233422 234566
Q ss_pred eeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHH-HHHHHHHhcCCCCcEEEEEecccCcccc--cch
Q 010254 62 RVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELST-FWLPELRRLEVKVPVIVVGCKLDLRDEN--QQV 138 (514)
Q Consensus 62 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~-~~~~~l~~~~~~~pvilv~NK~Dl~~~~--~~~ 138 (514)
+..+.||||||++++.......+..+|++++|+|++++.+...... .+....+.. ...|+|+|+||+|+.+.. +..
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccCccHHHHH
Confidence 7899999999998877666667899999999999998743211111 122223333 235799999999997421 111
Q ss_pred hHhhhhHHHHHHHhc---cCcEEEcCccccccc-eecCCCCChhhHHHHHHHHHH
Q 010254 139 SLEQVMMPIMQQFRE---IETCIECSALKQIQV-KCFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 139 ~~~~~~~~~~~~~~~---~~~~i~~Sa~~~~~~-~~f~~~l~~~~i~~L~~~i~~ 189 (514)
...+.+..+.+.++. ..++++|||++|.|+ +.+...--..| ..|++.|..
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g-~~l~~~l~~ 216 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKG-KTLLEALDA 216 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccc-hHHHHHHhc
Confidence 122334445554432 137899999999977 44432211112 246666643
No 361
>PRK10218 GTP-binding protein; Provisional
Probab=99.63 E-value=7.5e-15 Score=152.69 Aligned_cols=174 Identities=14% Similarity=0.089 Sum_probs=116.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC--CCCCCCC-----------CCCCCccc---ccceeCCeeEEEEEeCCCCccchh
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAAD--TFPANVP-----------PVLPPTRL---PEDFYPDRVPITIIDTPSSVEDRG 78 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~--~~~~~~~-----------~~~~~tt~---~~~~~~~~~~~~l~Dt~G~~~~~~ 78 (514)
+--+|+|+|+.++|||||+++|+.. .+..... ....+.|+ ...+..+++.+.+|||||+.++..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 3468999999999999999999973 2222111 01122332 224456789999999999999998
Q ss_pred hHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc-----
Q 010254 79 KLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE----- 153 (514)
Q Consensus 79 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~----- 153 (514)
.+..+++.+|++++|+|++++...+... ++..+... ++|+++|+||+|+... +.....+.+..+...++.
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~--~l~~a~~~--gip~IVviNKiD~~~a-~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTRF--VTKKAFAY--GLKPIVVINKVDRPGA-RPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHHH--HHHHHHHc--CCCEEEEEECcCCCCC-chhHHHHHHHHHHhccCcccccc
Confidence 8899999999999999998765443322 44555555 8999999999998754 222222222222221111
Q ss_pred cCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCcc
Q 010254 154 IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREGV 195 (514)
Q Consensus 154 ~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~ 195 (514)
..+++.+||++|.+..-.. -...|+..|++.|...+|...
T Consensus 159 ~~PVi~~SA~~G~~~~~~~--~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHE--DMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred CCCEEEeEhhcCcccCCcc--ccccchHHHHHHHHHhCCCCC
Confidence 1278999999998531111 112378999999999998653
No 362
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.63 E-value=7.5e-15 Score=135.06 Aligned_cols=183 Identities=21% Similarity=0.260 Sum_probs=126.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc---cccceeCCeeEEEEEeCCCCccchh-------hHHHhhh
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR---LPEDFYPDRVPITIIDTPSSVEDRG-------KLGEELR 85 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt---~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~ 85 (514)
...|++||.|+||||||+|+|++.+. . +...+-|| ++..+..++..++|+|+||+-.... ..-..++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~s--e-va~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKS--E-VADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCc--c-ccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 47899999999999999999999873 2 22233334 7778888999999999999865432 2345689
Q ss_pred ccCEEEEEEeCCCccc-HHHHHHHHH----------------------------------------HHHHhc--------
Q 010254 86 RADAVVLTYACDRPET-LDELSTFWL----------------------------------------PELRRL-------- 116 (514)
Q Consensus 86 ~ad~ii~v~d~~~~~s-~~~~~~~~~----------------------------------------~~l~~~-------- 116 (514)
.||+|++|+|+..... .+.+..++. ..++.+
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999986554 333322111 111111
Q ss_pred -----------------CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCCCCChhh
Q 010254 117 -----------------EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNSPLQPSE 179 (514)
Q Consensus 117 -----------------~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~l~~~~ 179 (514)
..-+|.+.|.||+|+... +....+.+.. +.+.+||+.+. |
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-------e~~~~l~~~~----~~v~isa~~~~------------n 276 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-------EELERLARKP----NSVPISAKKGI------------N 276 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-------HHHHHHHhcc----ceEEEecccCC------------C
Confidence 113899999999999875 3344444443 68999999999 9
Q ss_pred HHHHHHHHHHHhc--------Cc--cc-------CCCcchhhH-HHHHHHHHhcCCcchhhHH
Q 010254 180 IVGVKRVVQEKLR--------EG--VN-------ERGLTLAGF-LFLHALFIEKGRLETTWTV 224 (514)
Q Consensus 180 i~~L~~~i~~~~~--------~~--~~-------~~~~~~~~~-~~~~~l~~~~~r~~~~~~~ 224 (514)
+++|++.|.+.+. .+ +. .++-|.... ..+|.-++.+-|+..+|.-
T Consensus 277 ld~L~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~GsTV~Dvc~~IH~~l~~~FryA~VWGk 339 (365)
T COG1163 277 LDELKERIWDVLGLIRVYTKPPGEEPDFDEPLILRRGSTVGDVCRKIHRDLVENFRYARVWGK 339 (365)
T ss_pred HHHHHHHHHHhhCeEEEEecCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhcceEEEecc
Confidence 9999999998763 11 11 113333333 5667777788888777743
No 363
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.63 E-value=1.3e-14 Score=126.60 Aligned_cols=93 Identities=17% Similarity=0.150 Sum_probs=61.9
Q ss_pred hhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcE
Q 010254 78 GKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETC 157 (514)
Q Consensus 78 ~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (514)
...+..++++|++++|+|++++...... .+...+... ++|+++|+||+|+.+.. .... ...+....+ .++
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~~--~~p~iiv~NK~Dl~~~~---~~~~-~~~~~~~~~--~~~ 73 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLEL--GKKLLIVLNKADLVPKE---VLEK-WKSIKESEG--IPV 73 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHhC--CCcEEEEEEhHHhCCHH---HHHH-HHHHHHhCC--CcE
Confidence 3456677889999999999876543332 244444443 78999999999986431 1111 112222222 278
Q ss_pred EEcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 158 IECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 158 i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
+.+||+++. |+++|++.+.+.++
T Consensus 74 ~~iSa~~~~------------gi~~L~~~l~~~~~ 96 (156)
T cd01859 74 VYVSAKERL------------GTKILRRTIKELAK 96 (156)
T ss_pred EEEEccccc------------cHHHHHHHHHHHHh
Confidence 999999999 99999888876443
No 364
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.63 E-value=1.2e-14 Score=129.43 Aligned_cols=116 Identities=25% Similarity=0.342 Sum_probs=90.0
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.++|+++|++|||||||++++.+..+.. +.++.+ +....+... ...+.+||++|.+.+...+ ...++.+|+++
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g--~~~~~i~~~--~~~~~~~D~~G~~~~~~~~--~~~~~~~~~ii 86 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISH-ITPTQG--FNIKTVQSD--GFKLNVWDIGGQRAIRPYW--RNYFENTDCLI 86 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCC--cceEEEEEC--CEEEEEEECCCCHHHHHHH--HHHhcCCCEEE
Confidence 5899999999999999999999987653 334544 333445444 3566789999998887665 46778999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
+|+|+++..++.....++..+...... .++|+++++||+|+..
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKL--AGVPVLVFANKQDLAT 129 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhh--cCCCEEEEEECCCCcc
Confidence 999999999998888887776543211 2699999999999865
No 365
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.63 E-value=5e-15 Score=148.83 Aligned_cols=167 Identities=15% Similarity=0.181 Sum_probs=105.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccc-----------------eeC-------C-----ee
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPED-----------------FYP-------D-----RV 63 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~-----------------~~~-------~-----~~ 63 (514)
.+..++|+++|+.++|||||+.+|.+.-..........+.|+... +.. + ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 345699999999999999999999763211111111122332211 100 0 35
Q ss_pred EEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhh
Q 010254 64 PITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPE-TLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQ 142 (514)
Q Consensus 64 ~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~ 142 (514)
.+.+|||||++++.......+..+|++++|+|++++. ..+... .+..+.... ..|+++|+||+|+.+........+
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~--~l~~l~~~~-i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE--HLMALDIIG-IKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH--HHHHHHHcC-CCcEEEEEEeeccccchhHHHHHH
Confidence 7999999999887766666677889999999998653 222222 223333331 247999999999976422111112
Q ss_pred hhHHHHHHH-hccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 143 VMMPIMQQF-REIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 143 ~~~~~~~~~-~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
.+..+.+.+ ....+++++||++|. |+++|++.|.+.++..
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~------------gI~~L~~~L~~~l~~~ 203 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKV------------NIDALIEAIEEEIPTP 203 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCc------------CHHHHHHHHHHhCCCC
Confidence 222222221 112378999999999 9999999999877643
No 366
>CHL00071 tufA elongation factor Tu
Probab=99.63 E-value=8e-15 Score=147.73 Aligned_cols=176 Identities=13% Similarity=0.110 Sum_probs=115.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCC-------------CCCCCCCCcccc---cceeCCeeEEEEEeCCCCccc
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPA-------------NVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVED 76 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~-------------~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~ 76 (514)
.+..++|+++|++|+|||||+|+|++..-.. .......++|+. ..+..++..+.++||||+.++
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 4567999999999999999999999742100 011112344433 234456778999999999888
Q ss_pred hhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCccccc-chhHhhhhHHHHHHHhc-
Q 010254 77 RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLDLRDENQ-QVSLEQVMMPIMQQFRE- 153 (514)
Q Consensus 77 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~- 153 (514)
...+...+..+|++++|+|+..+..-+... .+..+... ++| +|+|+||+|+.+... .....+.+..+.+.++.
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~~--~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQTKE--HILLAKQV--GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 777778899999999999988654433322 55566655 788 778999999976421 12222234444444432
Q ss_pred --cCcEEEcCccccccce-ecCCC-----CChhhHHHHHHHHHHHhc
Q 010254 154 --IETCIECSALKQIQVK-CFNSP-----LQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 154 --~~~~i~~Sa~~~~~~~-~f~~~-----l~~~~i~~L~~~i~~~~~ 192 (514)
..+++++||.+|.|+- --... --..++..|++.|.+.++
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~ 211 (409)
T CHL00071 165 GDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIP 211 (409)
T ss_pred CCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCC
Confidence 1379999999998651 11000 001256788888877664
No 367
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.62 E-value=4.4e-15 Score=135.95 Aligned_cols=152 Identities=18% Similarity=0.245 Sum_probs=109.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeCC-eeEEEEEeCCCCccchhh-------HHHhh
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYPD-RVPITIIDTPSSVEDRGK-------LGEEL 84 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~~-~~~~~l~Dt~G~~~~~~~-------~~~~~ 84 (514)
-..|.+||-||+|||||+|+|...+ ..+ ...+-||+.. .+..+ ...+++-|.||+.+...+ .-.-+
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AK--pkV-a~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHi 272 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAK--PKV-AHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHI 272 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccC--Ccc-cccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHH
Confidence 3568899999999999999999987 332 2344555322 22233 445999999998765432 23447
Q ss_pred hccCEEEEEEeCCCc---ccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEE
Q 010254 85 RRADAVVLTYACDRP---ETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCI 158 (514)
Q Consensus 85 ~~ad~ii~v~d~~~~---~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (514)
++++..+||+|++.+ ..++.++. +..++..+. .+.|.++|+||+|+.+. ....++++++.+... .++
T Consensus 273 ER~~~l~fVvD~s~~~~~~p~~~~~l-L~~ELe~yek~L~~rp~liVaNKiD~~ea-----e~~~l~~L~~~lq~~-~V~ 345 (366)
T KOG1489|consen 273 ERCKGLLFVVDLSGKQLRNPWQQLQL-LIEELELYEKGLADRPALIVANKIDLPEA-----EKNLLSSLAKRLQNP-HVV 345 (366)
T ss_pred HhhceEEEEEECCCcccCCHHHHHHH-HHHHHHHHhhhhccCceEEEEeccCchhH-----HHHHHHHHHHHcCCC-cEE
Confidence 899999999999987 66676665 555555543 46899999999999644 012236677777652 599
Q ss_pred EcCccccccceecCCCCChhhHHHHHHHHHH
Q 010254 159 ECSALKQIQVKCFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 159 ~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~ 189 (514)
++||++++ |++.|++.+..
T Consensus 346 pvsA~~~e------------gl~~ll~~lr~ 364 (366)
T KOG1489|consen 346 PVSAKSGE------------GLEELLNGLRE 364 (366)
T ss_pred Eeeecccc------------chHHHHHHHhh
Confidence 99999999 99999887764
No 368
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=2e-14 Score=121.81 Aligned_cols=160 Identities=20% Similarity=0.189 Sum_probs=115.8
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCC-----CCCC--CCCccccccee----CCeeEEEEEeCCCCccchhhH
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN-----VPPV--LPPTRLPEDFY----PDRVPITIIDTPSSVEDRGKL 80 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~-----~~~~--~~~tt~~~~~~----~~~~~~~l~Dt~G~~~~~~~~ 80 (514)
..+...||+|+|+-++||||++.++........ -.+. ...||+..++. .++..+.|+||||++++..++
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 456789999999999999999999998763111 1111 11244333332 345889999999999999999
Q ss_pred HHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEc
Q 010254 81 GEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIEC 160 (514)
Q Consensus 81 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (514)
.-+.++++++++++|.+.+..++.. .++..+.... ..|++|++||.||.+. ...++..+.+...+.. .+++++
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~~a~--~ii~f~~~~~-~ip~vVa~NK~DL~~a---~ppe~i~e~l~~~~~~-~~vi~~ 158 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITFHAE--EIIDFLTSRN-PIPVVVAINKQDLFDA---LPPEKIREALKLELLS-VPVIEI 158 (187)
T ss_pred HHHhCCcceEEEEEecCCCcchHHH--HHHHHHhhcc-CCCEEEEeeccccCCC---CCHHHHHHHHHhccCC-Cceeee
Confidence 9999999999999999998888333 3777777652 2999999999999876 2222222222222112 289999
Q ss_pred CccccccceecCCCCChhhHHHHHHHHHHH
Q 010254 161 SALKQIQVKCFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 161 Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~ 190 (514)
+|..+. +..+.++.+..+
T Consensus 159 ~a~e~~------------~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGE------------GARDQLDVLLLK 176 (187)
T ss_pred ecccch------------hHHHHHHHHHhh
Confidence 999998 887777777665
No 369
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=4.5e-15 Score=144.21 Aligned_cols=142 Identities=16% Similarity=0.061 Sum_probs=98.2
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhH----HHhhh-cCccccccC
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA----VAKLL-SNKDSLAAC 444 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~----~~~~~-~~~~~~~~~ 444 (514)
..|.+||.||||||||+|+|.+.+......+.+|.......+.+. ....+.+||++|..+ ...+. ....+++++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 469999999999999999999876554443444555555566664 445677899998521 10111 113467889
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 445 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 445 d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+++++|+|+++.++++.+..|..++..+.... .++|+++|+||+|+.... ......+.++++++.++|
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L-~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~ 306 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPEL-ADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVF 306 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhc-ccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEE
Confidence 99999999998888999999988887764211 268999999999997543 223334455555555443
No 370
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.62 E-value=4.9e-15 Score=132.72 Aligned_cols=131 Identities=15% Similarity=0.143 Sum_probs=89.6
Q ss_pred EEEEeCCCCCChHHHHHHhhCCC-------CCCCCCC------CCCccEEEEEEEC-----CCCcEEEEEEecCChhHHH
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRP-------FSDNYTP------TTDERYAVNVVDQ-----PGGTKKTVVLREIPEEAVA 432 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~dt~g~~~~~ 432 (514)
+|+++|.+|||||||+++|++.. +...+.+ +.+..+....+.. ++......+|||+|.+.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999998743 1111211 1233333332222 3344556799999999988
Q ss_pred hhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCc
Q 010254 433 KLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMV 511 (514)
Q Consensus 433 ~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 511 (514)
..+ ..+++.+|++|+|||+++..+++....|.... .. ++|+++|+||+|+.... ......++++.++++
T Consensus 82 ~~~--~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~~------~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~ 150 (179)
T cd01890 82 YEV--SRSLAACEGALLLVDATQGVEAQTLANFYLAL-EN------NLEIIPVINKIDLPSAD-PERVKQQIEDVLGLD 150 (179)
T ss_pred HHH--HHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-Hc------CCCEEEEEECCCCCcCC-HHHHHHHHHHHhCCC
Confidence 766 56889999999999999887776666664332 21 68999999999986532 223345667776664
No 371
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.62 E-value=8.8e-15 Score=146.95 Aligned_cols=172 Identities=16% Similarity=0.170 Sum_probs=111.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcC------CCCC-------CCCCCCCCcccc---cceeCCeeEEEEEeCCCCccc
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAAD------TFPA-------NVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVED 76 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~------~~~~-------~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~ 76 (514)
.+..++|+++|+.++|||||+++|++. .-.. .......++|+. ..+..++..+.+|||||++++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 466899999999999999999999843 1000 000112344422 234455778999999999988
Q ss_pred hhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEE-EEEecccCcccc-cchhHhhhhHHHHHHHhc-
Q 010254 77 RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVI-VVGCKLDLRDEN-QQVSLEQVMMPIMQQFRE- 153 (514)
Q Consensus 77 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvi-lv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~- 153 (514)
.......+..+|++++|+|++.+...+..+ .+..+... ++|.+ +|+||+|+.+.. +.....+.+..+.+.++.
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~e--~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~ 164 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQTRE--HILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 776667778999999999998754433332 44455555 67755 689999997641 112222334555555542
Q ss_pred --cCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 154 --IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 154 --~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
..+++++||++|.+... . -..++..|++.+.+.++
T Consensus 165 ~~~~~ii~vSa~~g~~g~~--~--~~~~~~~ll~~l~~~~~ 201 (394)
T TIGR00485 165 GDDTPIIRGSALKALEGDA--E--WEAKILELMDAVDEYIP 201 (394)
T ss_pred ccCccEEECccccccccCC--c--hhHhHHHHHHHHHhcCC
Confidence 13799999998853210 0 11256777777776654
No 372
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.61 E-value=6.7e-15 Score=129.68 Aligned_cols=112 Identities=16% Similarity=0.166 Sum_probs=75.5
Q ss_pred EEEEeCCCCCChHHHHHHhhCCC---CCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRP---FSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
.|+++|++|||||||+++|.+.. +...+.++.+.......+... ......+|||+|++.+.... ...++++|++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~--~~~~~~ad~i 78 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLP-SGKRLGFIDVPGHEKFIKNM--LAGAGGIDLV 78 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEec-CCcEEEEEECCChHHHHHHH--HhhhhcCCEE
Confidence 58999999999999999999754 222222333333333344443 23467789999998886544 4568899999
Q ss_pred EEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 448 VFVHDSSD---ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 448 ilv~D~~~---~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
++|+|+++ ..+++.+. .+.... ..|+++|+||+|+...
T Consensus 79 i~V~d~~~~~~~~~~~~~~----~~~~~~-----~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 79 LLVVAADEGIMPQTREHLE----ILELLG-----IKRGLVVLTKADLVDE 119 (164)
T ss_pred EEEEECCCCccHhHHHHHH----HHHHhC-----CCcEEEEEECccccCH
Confidence 99999987 33333222 122221 2499999999999764
No 373
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.61 E-value=9.7e-15 Score=129.80 Aligned_cols=118 Identities=26% Similarity=0.351 Sum_probs=96.0
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|..|+|||||++++..+.... ..||.+ +.+..+... ...+.+||..|+..++.++ +.++.++|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g--~~~~~i~~~--~~~~~~~d~gG~~~~~~~w--~~y~~~~~~ 84 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG--FNIEEIKYK--GYSLTIWDLGGQESFRPLW--KSYFQNADG 84 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS--EEEEEEEET--TEEEEEEEESSSGGGGGGG--GGGHTTESE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc--cccceeeeC--cEEEEEEeccccccccccc--eeeccccce
Confidence 456899999999999999999999876544 335544 666666664 3566789999999888888 678999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
+|+|+|+++.+.+.+....+..+...... .++|++|++||.|+..
T Consensus 85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~--~~~piLIl~NK~D~~~ 129 (175)
T PF00025_consen 85 IIFVVDSSDPERLQEAKEELKELLNDPEL--KDIPILILANKQDLPD 129 (175)
T ss_dssp EEEEEETTGGGGHHHHHHHHHHHHTSGGG--TTSEEEEEEESTTSTT
T ss_pred eEEEEecccceeecccccchhhhcchhhc--ccceEEEEeccccccC
Confidence 99999999999999998888887664322 2799999999999876
No 374
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.60 E-value=5.8e-15 Score=118.12 Aligned_cols=164 Identities=16% Similarity=0.220 Sum_probs=120.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
.++.+||.++|-.|+|||||+..|.+.+. ..+.++.+-.+..+.++. .+.+++||.+|+..-+..+..|+.+.|.+|+
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 47889999999999999999999998874 445554444455555543 6889999999999889999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHH-HHHh-ccCcEEEcCccccccce
Q 010254 93 TYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIM-QQFR-EIETCIECSALKQIQVK 169 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~~Sa~~~~~~~ 169 (514)
|+|.++...|+++..++.+.+.... ...|+.|..||.|+.... ..++....+- ..+. -...+-+|||.++.
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa---~~eeia~klnl~~lrdRswhIq~csals~e--- 165 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA---KVEEIALKLNLAGLRDRSWHIQECSALSLE--- 165 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc---chHHHHHhcchhhhhhceEEeeeCcccccc---
Confidence 9999998889888776777665542 368999999999987652 1222111110 0000 01167899999998
Q ss_pred ecCCCCChhhHHHHHHHHHHHhcC
Q 010254 170 CFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 170 ~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
|..+=.++++++...
T Consensus 166 ---------g~~dg~~wv~sn~~~ 180 (185)
T KOG0074|consen 166 ---------GSTDGSDWVQSNPET 180 (185)
T ss_pred ---------CccCcchhhhcCCCC
Confidence 666666777765543
No 375
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.60 E-value=5.2e-15 Score=134.22 Aligned_cols=127 Identities=13% Similarity=0.131 Sum_probs=86.5
Q ss_pred EEEEEeCCCCCChHHHHHHhhC--CCCCCCC------------CCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhh
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLG--RPFSDNY------------TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLL 435 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~ 435 (514)
.+|+++|.+|||||||+++|++ +.+...+ ..+.+..+......+..+...+.+|||+|++.|....
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3799999999999999999997 4443322 1123333444444444355677899999999988766
Q ss_pred cCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc--chhhHHHHH
Q 010254 436 SNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM--AIQDSTRVF 505 (514)
Q Consensus 436 ~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~ 505 (514)
..+++++|++++|||+++.. +.....++..+... ++|+++|+||+|+...+. ...+..++.
T Consensus 83 --~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~~------~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~ 145 (194)
T cd01891 83 --ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALEL------GLKPIVVINKIDRPDARPEEVVDEVFDLF 145 (194)
T ss_pred --HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHHc------CCCEEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 57889999999999998742 23333344444332 689999999999965331 234444444
No 376
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.60 E-value=1e-14 Score=141.75 Aligned_cols=142 Identities=17% Similarity=0.039 Sum_probs=98.8
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHH----hhh-cCccccccC
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA----KLL-SNKDSLAAC 444 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~----~~~-~~~~~~~~~ 444 (514)
..|+++|.||||||||+|+|.+........+.+|.......+.+. +...+.+||++|..+.. .+. .....++++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 469999999999999999999876544443444555555666665 44667889999953211 011 012456789
Q ss_pred cEEEEEEeCCCh---hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 445 DIAVFVHDSSDE---SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 445 d~vilv~D~~~~---~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
+++++|+|+++. ++++.+..|..++..+... ..++|+++|+||+|+.......+..++++++++.+++
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~-l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi 307 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPE-LAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVF 307 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhh-hccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEE
Confidence 999999999976 6788888888777655321 1268999999999997654334455666766665543
No 377
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.59 E-value=2.6e-14 Score=135.02 Aligned_cols=128 Identities=14% Similarity=0.102 Sum_probs=86.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC------CCCcc----------------cccceeCCeeEEEEEeCCCCc
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPV------LPPTR----------------LPEDFYPDRVPITIIDTPSSV 74 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~------~~~tt----------------~~~~~~~~~~~~~l~Dt~G~~ 74 (514)
-+|+|+|++|+|||||+++|+...-....... .+.++ ....+..+++++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 36999999999999999999864311110000 01111 111445678999999999998
Q ss_pred cchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHh
Q 010254 75 EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR 152 (514)
Q Consensus 75 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 152 (514)
++......+++.+|++++|+|++++..... ..+....... ++|+++++||+|+.... ..+.+..+...++
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~~--~~P~iivvNK~D~~~a~----~~~~~~~l~~~l~ 152 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRLR--GIPIITFINKLDREGRD----PLELLDEIEEELG 152 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHhc--CCCEEEEEECCccCCCC----HHHHHHHHHHHHC
Confidence 887777888999999999999987644322 2255555554 79999999999986541 1222345555554
No 378
>PRK12289 GTPase RsgA; Reviewed
Probab=99.59 E-value=2.2e-14 Score=139.64 Aligned_cols=86 Identities=19% Similarity=0.169 Sum_probs=58.1
Q ss_pred HHHhhhccCEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEE
Q 010254 80 LGEELRRADAVVLTYACDRPE-TLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCI 158 (514)
Q Consensus 80 ~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (514)
.+.+++++|.+++|+|+.++. ....++. |+..+... ++|++||+||+||.+. ...... ......++ . +++
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR-~L~~a~~~--~ip~ILVlNK~DLv~~---~~~~~~-~~~~~~~g-~-~v~ 153 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSR-FLVKAEST--GLEIVLCLNKADLVSP---TEQQQW-QDRLQQWG-Y-QPL 153 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHH-HHHHHHHC--CCCEEEEEEchhcCCh---HHHHHH-HHHHHhcC-C-eEE
Confidence 355689999999999998765 3334444 66555444 8999999999999754 111111 11122332 2 789
Q ss_pred EcCccccccceecCCCCChhhHHHHHHH
Q 010254 159 ECSALKQIQVKCFNSPLQPSEIVGVKRV 186 (514)
Q Consensus 159 ~~Sa~~~~~~~~f~~~l~~~~i~~L~~~ 186 (514)
.+||+++. |+++|.+.
T Consensus 154 ~iSA~tg~------------GI~eL~~~ 169 (352)
T PRK12289 154 FISVETGI------------GLEALLEQ 169 (352)
T ss_pred EEEcCCCC------------CHHHHhhh
Confidence 99999999 88776544
No 379
>PLN03127 Elongation factor Tu; Provisional
Probab=99.59 E-value=2.9e-14 Score=144.10 Aligned_cols=174 Identities=15% Similarity=0.154 Sum_probs=112.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcC------CCCCC-------CCCCCCCcccc---cceeCCeeEEEEEeCCCCcc
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAAD------TFPAN-------VPPVLPPTRLP---EDFYPDRVPITIIDTPSSVE 75 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~------~~~~~-------~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~ 75 (514)
..+..++|+++|++++|||||+++|.+. ..... ......++|+. ..+..++..+.++||||+++
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 3467799999999999999999999732 11000 11112455533 24445677899999999998
Q ss_pred chhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCccccc-chhHhhhhHHHHHHHhc
Q 010254 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLDLRDENQ-QVSLEQVMMPIMQQFRE 153 (514)
Q Consensus 76 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~ 153 (514)
+...+...+..+|++++|+|++.+...+.. ..+..+... ++| +|+|+||+|+.+... ....++.+..+...++.
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt~--e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 877777777889999999998876544332 255566666 788 578999999975311 11122222333333221
Q ss_pred ---cCcEEEcCcccc---ccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 154 ---IETCIECSALKQ---IQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 154 ---~~~~i~~Sa~~~---~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
..+++++||.++ .|.. ....++..|++.+.+.+|..
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~-----~~~~~i~~Ll~~l~~~lp~p 254 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDE-----IGKNAILKLMDAVDEYIPEP 254 (447)
T ss_pred CCCcceEEEeccceeecCCCcc-----cccchHHHHHHHHHHhCCCC
Confidence 237888888744 3221 11235888999998877643
No 380
>PRK00049 elongation factor Tu; Reviewed
Probab=99.58 E-value=2.9e-14 Score=142.90 Aligned_cols=174 Identities=15% Similarity=0.147 Sum_probs=113.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCC----C--C-------CCCCCCCccccc---ceeCCeeEEEEEeCCCCccc
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFP----A--N-------VPPVLPPTRLPE---DFYPDRVPITIIDTPSSVED 76 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~----~--~-------~~~~~~~tt~~~---~~~~~~~~~~l~Dt~G~~~~ 76 (514)
.+..++|+++|++++|||||+++|++.... . . ......++|+.. .+..++..+.++||||+.++
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 467799999999999999999999973110 0 0 001133444332 34455778999999999887
Q ss_pred hhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEE-EEEecccCccccc-chhHhhhhHHHHHHHhc-
Q 010254 77 RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVI-VVGCKLDLRDENQ-QVSLEQVMMPIMQQFRE- 153 (514)
Q Consensus 77 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvi-lv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~- 153 (514)
.......+..+|++++|+|+..+...+... ++..+... ++|++ +++||+|+.+... .......+..+...++.
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~qt~~--~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQTRE--HILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchHHHH--HHHHHHHc--CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 777777889999999999998764433322 55666665 78976 6899999975311 11122233334333321
Q ss_pred --cCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 154 --IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 154 --~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
..+++++||+++.+...-... .+++..|++.|.+.++
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w--~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEW--EKKILELMDAVDSYIP 203 (396)
T ss_pred ccCCcEEEeecccccCCCCcccc--cccHHHHHHHHHhcCC
Confidence 137899999998642100011 1267888888888765
No 381
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.58 E-value=2e-14 Score=135.95 Aligned_cols=141 Identities=16% Similarity=0.116 Sum_probs=96.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC-C--CCC------------CCCCcccc---cceeCCeeEEEEEeCCCCccchhh
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPA-N--VPP------------VLPPTRLP---EDFYPDRVPITIIDTPSSVEDRGK 79 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~-~--~~~------------~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~~ 79 (514)
+|+|+|++|+|||||+++|+...-.. . .+. ...++|+. ..+..++..+.++||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999997421100 0 010 11233322 234456889999999999888888
Q ss_pred HHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc--cCcE
Q 010254 80 LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--IETC 157 (514)
Q Consensus 80 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~ 157 (514)
+..+++.+|++++|+|+..+...+.. .+...+... ++|+++++||+|+.... .+.....+...++. +...
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~--~~~~~~~~~--~~p~ivviNK~D~~~a~----~~~~~~~l~~~l~~~~~~~~ 152 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTE--TVWRQADRY--NVPRIAFVNKMDRTGAD----FFRVVEQIREKLGANPVPLQ 152 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCCceEEE
Confidence 88899999999999999876543332 255666665 79999999999987541 22233444444432 2357
Q ss_pred EEcCccccc
Q 010254 158 IECSALKQI 166 (514)
Q Consensus 158 i~~Sa~~~~ 166 (514)
+++|+..+.
T Consensus 153 ~Pisa~~~f 161 (270)
T cd01886 153 LPIGEEDDF 161 (270)
T ss_pred eccccCCCc
Confidence 889998664
No 382
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=3.9e-14 Score=131.11 Aligned_cols=155 Identities=26% Similarity=0.332 Sum_probs=104.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeCCeeEEEEEeCCCCccc-hh-------hHHH
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYPDRVPITIIDTPSSVED-RG-------KLGE 82 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~~~~~~~l~Dt~G~~~~-~~-------~~~~ 82 (514)
.+-..|+|.|.||||||||++++++.+. .+.+ .|-||... .+..+..+++++||||+-+- .. +...
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~Akp--EvA~-YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~ 242 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKP--EVAP-YPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAIL 242 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCC--ccCC-CCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHH
Confidence 3567899999999999999999999883 3333 45566443 44566779999999998321 11 1112
Q ss_pred hh-hccCEEEEEEeCCC--cccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEE
Q 010254 83 EL-RRADAVVLTYACDR--PETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIE 159 (514)
Q Consensus 83 ~~-~~ad~ii~v~d~~~--~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (514)
++ .=+++|+|++|.+. +-+++.... ++..++... +.|+++|.||+|..+. ...++....+... + ......
T Consensus 243 AL~hl~~~IlF~~D~Se~cgy~lE~Q~~-L~~eIk~~f-~~p~v~V~nK~D~~~~---e~~~~~~~~~~~~-~-~~~~~~ 315 (346)
T COG1084 243 ALRHLAGVILFLFDPSETCGYSLEEQIS-LLEEIKELF-KAPIVVVINKIDIADE---EKLEEIEASVLEE-G-GEEPLK 315 (346)
T ss_pred HHHHhcCeEEEEEcCccccCCCHHHHHH-HHHHHHHhc-CCCeEEEEecccccch---hHHHHHHHHHHhh-c-cccccc
Confidence 23 45889999999874 455666554 777777765 4899999999998865 1112111112222 1 224677
Q ss_pred cCccccccceecCCCCChhhHHHHHHHHHHH
Q 010254 160 CSALKQIQVKCFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 160 ~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~ 190 (514)
+|+..+. +++.+.+.+...
T Consensus 316 ~~~~~~~------------~~d~~~~~v~~~ 334 (346)
T COG1084 316 ISATKGC------------GLDKLREEVRKT 334 (346)
T ss_pred eeeeehh------------hHHHHHHHHHHH
Confidence 8888888 888888777665
No 383
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.58 E-value=3e-14 Score=126.20 Aligned_cols=133 Identities=17% Similarity=0.113 Sum_probs=85.4
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHH----------HhhhcCccc
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV----------AKLLSNKDS 440 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~----------~~~~~~~~~ 440 (514)
+|+++|++|||||||+|+|.+..+.....+..+.......... +...+.+|||+|.... ..+. ..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~---~~ 76 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAIT---AL 76 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHH---HH
Confidence 6899999999999999999998875332222233333333333 3456779999997321 1110 11
Q ss_pred cccCcEEEEEEeCCChhhH--HHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 441 LAACDIAVFVHDSSDESSW--KRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 441 ~~~~d~vilv~D~~~~~s~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
...+|++++|+|+++..++ +....|+..+.... .+.|+++|+||+|+...+. ..+..++++..+.+++
T Consensus 77 ~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~----~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~ 146 (168)
T cd01897 77 AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF----KNKPVIVVLNKIDLLTFED-LSEIEEEEELEGEEVL 146 (168)
T ss_pred HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc----CcCCeEEEEEccccCchhh-HHHHHHhhhhccCceE
Confidence 1236899999999987653 56667777775542 2699999999999976432 1124555554455443
No 384
>PTZ00099 rab6; Provisional
Probab=99.58 E-value=2.7e-14 Score=126.71 Aligned_cols=117 Identities=15% Similarity=0.220 Sum_probs=97.2
Q ss_pred CCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 010254 392 RPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVAS 471 (514)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~ 471 (514)
+.|...+.+|.+.++..+.+.+.++...+.+|||+|++.+..++ ..+++++|++|+|||++++.||+.+..|+..+..
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~--~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~ 80 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLI--PSYIRDSAAAIVVYDITNRQSFENTTKWIQDILN 80 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhcc--HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 45677788899988887878887556677799999999998876 5789999999999999999999999999998876
Q ss_pred cCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 472 YGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 472 ~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
... +++|++||+||+|+...+ +...++..+++.+++.|+
T Consensus 81 ~~~---~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~ 120 (176)
T PTZ00099 81 ERG---KDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFH 120 (176)
T ss_pred hcC---CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 542 268999999999997543 567778888888887765
No 385
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.58 E-value=7.4e-15 Score=119.47 Aligned_cols=162 Identities=19% Similarity=0.273 Sum_probs=121.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--cccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP--TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~--tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
-.+||.++|++.+|||||+-..++..+.+....+.+. ......+....+.+.|||.+|++++.+++..+.+.+-+|+|
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 3589999999999999999999998875443332222 11333444567889999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc---cchhHhhhhHHHHHHHhccCcEEEcCccccccce
Q 010254 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN---QQVSLEQVMMPIMQQFREIETCIECSALKQIQVK 169 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~ 169 (514)
++|++.+.++..+.+ |+.+.+..++..--|+||+|-|+.-+- .+.++......+++-... +.|.||+.+..
T Consensus 99 mFDLt~r~TLnSi~~-WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnA--sL~F~Sts~sI--- 172 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKE-WYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNA--SLFFCSTSHSI--- 172 (205)
T ss_pred EEecCchHHHHHHHH-HHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCC--cEEEeeccccc---
Confidence 999999999999987 999999886555557999999964321 222233333444544443 88999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHHh
Q 010254 170 CFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 170 ~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
+++.+...+...+
T Consensus 173 ---------Nv~KIFK~vlAkl 185 (205)
T KOG1673|consen 173 ---------NVQKIFKIVLAKL 185 (205)
T ss_pred ---------cHHHHHHHHHHHH
Confidence 6666666665544
No 386
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.58 E-value=1.2e-14 Score=127.34 Aligned_cols=129 Identities=16% Similarity=0.129 Sum_probs=88.2
Q ss_pred EeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhh----cCcccc--ccCcEE
Q 010254 374 VFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLL----SNKDSL--AACDIA 447 (514)
Q Consensus 374 iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~----~~~~~~--~~~d~v 447 (514)
++|++|||||||+|++.+..+.....++.+.......+.++ + ..+.+|||+|.+.+.... .....+ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG-G-KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC-C-eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 58999999999999999987544444555555555666665 3 456789999986654210 002233 599999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
++|+|+++.++. ..+...+... ++|+++|+||+|+............+++.++++++
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 135 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLEL------GLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVV 135 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHHc------CCCEEEEEehhhhcccccchhhHHHHHHhhCCCeE
Confidence 999999876443 2343344332 68999999999997654333445677777777654
No 387
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.58 E-value=3.6e-14 Score=115.23 Aligned_cols=141 Identities=21% Similarity=0.201 Sum_probs=107.1
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCC-CCCCccEEEEEEECCCCcE-EEEEEecCChhHHHhhhcCccccccCcE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-PTTDERYAVNVVDQPGGTK-KTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
..||+++|-.+||||+++.+|+.++...... .++-.+.++..++.+.|.. ...+.||+|-..+..-+ .+.++.-+|+
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eL-prhy~q~aDa 87 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQEL-PRHYFQFADA 87 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhh-hHhHhccCce
Confidence 4799999999999999999998777554433 2333345556777764544 45588999965553222 2678889999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCcc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVL 512 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~ 512 (514)
++||||..+++||+.++..-..|.+...+. .+|+++++||+|+.+.+ +....+..||++-.+..
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKK--EvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl 152 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKK--EVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKL 152 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccc--cccEEEEechhhcccchhcCHHHHHHHHhhhheeE
Confidence 999999999999999998888888766554 79999999999997654 66777888888655443
No 388
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=5.9e-15 Score=122.87 Aligned_cols=167 Identities=16% Similarity=0.170 Sum_probs=114.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCC---CCCC----CCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhh
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADT---FPAN----VPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELR 85 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~---~~~~----~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 85 (514)
.+..+.|+|+|.-|+|||||+.++-..- +... +.++.+- ....+.....++.+||..|++...+.+..|+.
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgL--nig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGL--NIGTIEVCNAPLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccce--eecceeeccceeEEEEcCChHHHHHHHHHHHH
Confidence 3567899999999999999999875432 1111 1111111 11223334788999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc-cCcEEEcCcc
Q 010254 86 RADAVVLTYACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE-IETCIECSAL 163 (514)
Q Consensus 86 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~Sa~ 163 (514)
.++++|+|+|+++++.++.....+-..+..- -.+.|+++.+||.|+.+............ +++..+. ..++.+|||.
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~-~~e~~~~rd~~~~pvSal 170 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFG-LAELIPRRDNPFQPVSAL 170 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhh-hhhhcCCccCccccchhh
Confidence 9999999999999888877665444443332 24899999999999987622222221111 1222221 1278999999
Q ss_pred ccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 164 KQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 164 ~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
+|+ |+.+-+.++...++..
T Consensus 171 ~ge------------gv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 171 TGE------------GVKEGIEWLVKKLEKN 189 (197)
T ss_pred hcc------------cHHHHHHHHHHHHhhc
Confidence 999 7777777777766544
No 389
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.57 E-value=1.3e-13 Score=112.12 Aligned_cols=167 Identities=17% Similarity=0.254 Sum_probs=116.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc----cee---CCeeEEEEEeCCCCccc-hhhHHHhhhc
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE----DFY---PDRVPITIIDTPSSVED-RGKLGEELRR 86 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~----~~~---~~~~~~~l~Dt~G~~~~-~~~~~~~~~~ 86 (514)
...||+++|.-+||||+++..|+-++.... . .-..|++- .+. ...-.+.|.||+|+..+ ...-..++.-
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~--~-e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~ 84 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPG--T-ELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQF 84 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCC--C-ccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhcc
Confidence 468999999999999999999998773222 1 11122211 111 12356899999999877 4455778999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccc
Q 010254 87 ADAVVLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALK 164 (514)
Q Consensus 87 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 164 (514)
+|++++|||..+++||+.++. +..++.+.. +.+||++.+||+|+.+. +.+..+ ..+.+++.=. ...++++|..
T Consensus 85 aDafVLVYs~~d~eSf~rv~l-lKk~Idk~KdKKEvpiVVLaN~rdr~~p-~~vd~d-~A~~Wa~rEk--vkl~eVta~d 159 (198)
T KOG3883|consen 85 ADAFVLVYSPMDPESFQRVEL-LKKEIDKHKDKKEVPIVVLANKRDRAEP-REVDMD-VAQIWAKREK--VKLWEVTAMD 159 (198)
T ss_pred CceEEEEecCCCHHHHHHHHH-HHHHHhhccccccccEEEEechhhcccc-hhcCHH-HHHHHHhhhh--eeEEEEEecc
Confidence 999999999999999998875 666776653 46899999999999765 333322 2233433321 1679999998
Q ss_pred cccceecCCCCChhhHHHHHHHHHHHhcCcccCCCcc
Q 010254 165 QIQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLT 201 (514)
Q Consensus 165 ~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~~~~~~~ 201 (514)
.. .+-+-.-.+...+.....++.+.
T Consensus 160 R~------------sL~epf~~l~~rl~~pqskS~Fp 184 (198)
T KOG3883|consen 160 RP------------SLYEPFTYLASRLHQPQSKSTFP 184 (198)
T ss_pred ch------------hhhhHHHHHHHhccCCcccccCc
Confidence 87 66666677777766554444433
No 390
>PRK09866 hypothetical protein; Provisional
Probab=99.57 E-value=9.3e-14 Score=140.23 Aligned_cols=111 Identities=17% Similarity=0.213 Sum_probs=76.0
Q ss_pred eEEEEEeCCCCccch-----hhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccc
Q 010254 63 VPITIIDTPSSVEDR-----GKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQ 137 (514)
Q Consensus 63 ~~~~l~Dt~G~~~~~-----~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~ 137 (514)
..+.++||||+.... ..+...+.++|+|+||+|++...+..+. .++..+++...+.|+++|+||+|+.+.. .
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~K~~PVILVVNKIDl~dre-e 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVGQSVPLYVLVNKFDQQDRN-S 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcCCCCCEEEEEEcccCCCcc-c
Confidence 346799999997532 2345679999999999999876555443 3777777763335999999999986431 1
Q ss_pred hhHhhhhHHHHH-HH----hccCcEEEcCccccccceecCCCCChhhHHHHHHHHHH
Q 010254 138 VSLEQVMMPIMQ-QF----REIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 138 ~~~~~~~~~~~~-~~----~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~ 189 (514)
.. .+.+.++.. .+ ..+..+++|||+.|. |++.|++.|..
T Consensus 307 dd-kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~------------nid~LLdeI~~ 350 (741)
T PRK09866 307 DD-ADQVRALISGTLMKGCITPQQIFPVSSMWGY------------LANRARHELAN 350 (741)
T ss_pred ch-HHHHHHHHHHHHHhcCCCCceEEEEeCCCCC------------CHHHHHHHHHh
Confidence 11 122223222 11 123479999999999 88888888876
No 391
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.57 E-value=3.6e-14 Score=128.16 Aligned_cols=94 Identities=19% Similarity=0.139 Sum_probs=60.3
Q ss_pred chhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHH-----HH
Q 010254 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIM-----QQ 150 (514)
Q Consensus 76 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~-----~~ 150 (514)
+...+..+++++|++++|+|++++... |...+.....++|+++|+||+|+.... . . .+....+. +.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~~~~~~~~ilV~NK~Dl~~~~-~-~-~~~~~~~~~~~~~~~ 94 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRLFGGNNPVILVGNKIDLLPKD-K-N-LVRIKNWLRAKAAAG 94 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHHhcCCCcEEEEEEchhcCCCC-C-C-HHHHHHHHHHHHHhh
Confidence 355677789999999999999875421 222222222378999999999997541 1 1 11112222 11
Q ss_pred Hh-ccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHH
Q 010254 151 FR-EIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 151 ~~-~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~ 190 (514)
.+ ...+++++||+++. |+++|++.|.+.
T Consensus 95 ~~~~~~~i~~vSA~~~~------------gi~eL~~~l~~~ 123 (190)
T cd01855 95 LGLKPKDVILISAKKGW------------GVEELINAIKKL 123 (190)
T ss_pred cCCCcccEEEEECCCCC------------CHHHHHHHHHHH
Confidence 11 11268999999999 999998877653
No 392
>PRK11058 GTPase HflX; Provisional
Probab=99.57 E-value=1.9e-14 Score=144.35 Aligned_cols=121 Identities=17% Similarity=0.144 Sum_probs=86.6
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHH------HhhhcCccccc
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV------AKLLSNKDSLA 442 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~------~~~~~~~~~~~ 442 (514)
..+|+++|.||||||||+|+|++.++.....+..|.+.....+.++ +.....+|||+|..+. ..+......++
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~-~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVA-DVGETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeC-CCCeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 3589999999999999999999988764444555555555666666 4445678999996221 11112235678
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 443 ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 443 ~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
.+|++++|+|++++.+++.+..|...+..... .+.|+++|+||+|+..
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~---~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDA---HEIPTLLVMNKIDMLD 323 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc---CCCCEEEEEEcccCCC
Confidence 99999999999999887777554443333221 1689999999999865
No 393
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.57 E-value=3.5e-14 Score=123.99 Aligned_cols=121 Identities=26% Similarity=0.342 Sum_probs=93.0
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|.+|+|||||++++.+..+...+.++.+.++....+...+......+||++|++.+..++ ...++.++.++.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--~~~~~~~~~~i~ 79 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIR--RLYYRAVESSLR 79 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHH--HHHHhhhhEEEE
Confidence 689999999999999999999999766666666666665556665222556789999988887666 456678899999
Q ss_pred EEeCCCh-hhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 010254 450 VHDSSDE-SSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 495 (514)
Q Consensus 450 v~D~~~~-~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 495 (514)
++|.... .++.... .|...+...... +.|+++|+||+|+....
T Consensus 80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~~ 124 (161)
T TIGR00231 80 VFDIVILVLDVEEILEKQTKEIIHHAES---NVPIILVGNKIDLRDAK 124 (161)
T ss_pred EEEEeeeehhhhhHhHHHHHHHHHhccc---CCcEEEEEEcccCCcch
Confidence 9999877 6676665 666666554421 68999999999997744
No 394
>PRK15494 era GTPase Era; Provisional
Probab=99.57 E-value=2.8e-14 Score=139.83 Aligned_cols=129 Identities=19% Similarity=0.224 Sum_probs=85.6
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccE-EEEEEECCCCcEEEEEEecCChhH-HHhhh-----cCccc
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERY-AVNVVDQPGGTKKTVVLREIPEEA-VAKLL-----SNKDS 440 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~dt~g~~~-~~~~~-----~~~~~ 440 (514)
..++|+++|++|||||||+|+|++..+..+++.+.+++. ....+..+ + ....+|||+|... +..+. .....
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~-~-~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLK-D-TQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeC-C-eEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 457999999999999999999999988765544444333 33344444 3 3567899999732 11111 11245
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHH-HHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHc
Q 010254 441 LAACDIAVFVHDSSDESSWKRATEL-LVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFL 508 (514)
Q Consensus 441 ~~~~d~vilv~D~~~~~s~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 508 (514)
+..+|++++|+|+++. |+....+ +..+... +.|.++|+||+|+... ...+..+++++.
T Consensus 129 l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~------~~p~IlViNKiDl~~~--~~~~~~~~l~~~ 187 (339)
T PRK15494 129 LHSADLVLLIIDSLKS--FDDITHNILDKLRSL------NIVPIFLLNKIDIESK--YLNDIKAFLTEN 187 (339)
T ss_pred hhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc------CCCEEEEEEhhcCccc--cHHHHHHHHHhc
Confidence 7899999999998763 6666544 4444433 4688899999998653 234455555443
No 395
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.57 E-value=5.8e-15 Score=143.58 Aligned_cols=120 Identities=22% Similarity=0.247 Sum_probs=89.9
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHh------hhcCcc
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK------LLSNKD 439 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~------~~~~~~ 439 (514)
-+..+|++++|+||||||||+|.|++.++.++++.++|||+.+.....- ++..+.++||||.++-.. +.++..
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEE-CCEEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 3556899999999999999999999999999999999998888754443 455666789999432221 224567
Q ss_pred ccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 440 SLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 440 ~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
.++.||.+++|+|++.+ ....+..+.... . .+.|+++|.||.||..+
T Consensus 293 ~i~~ADlvL~v~D~~~~--~~~~d~~~~~~~-~-----~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 293 AIEEADLVLFVLDASQP--LDKEDLALIELL-P-----KKKPIIVVLNKADLVSK 339 (454)
T ss_pred HHHhCCEEEEEEeCCCC--CchhhHHHHHhc-c-----cCCCEEEEEechhcccc
Confidence 88999999999999986 222222222211 1 27999999999999874
No 396
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.57 E-value=2.5e-14 Score=152.16 Aligned_cols=152 Identities=20% Similarity=0.145 Sum_probs=98.8
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC----------CCCC----------------------ccccc---
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPP----------VLPP----------------------TRLPE--- 56 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~----------~~~~----------------------tt~~~--- 56 (514)
..+..++|+|+|++|+|||||+|+|+... ..+.. ...+ +|+..
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~--~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~ 97 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDS--KMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYR 97 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeee
Confidence 34567899999999999999999999755 22221 0111 22111
Q ss_pred ceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccccc
Q 010254 57 DFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ 136 (514)
Q Consensus 57 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~ 136 (514)
.+..++..+.++||||++++...+...+..+|++++|+|++.+...+... ....+.... .+|+|+|+||+|+.+..
T Consensus 98 ~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e--~~~~~~~~~-~~~iivvvNK~D~~~~~- 173 (632)
T PRK05506 98 YFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR--HSFIASLLG-IRHVVLAVNKMDLVDYD- 173 (632)
T ss_pred EEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH--HHHHHHHhC-CCeEEEEEEecccccch-
Confidence 33355678999999999887766677889999999999997654332222 223333331 36789999999997521
Q ss_pred chhHh---hhhHHHHHHHhcc-CcEEEcCccccccce
Q 010254 137 QVSLE---QVMMPIMQQFREI-ETCIECSALKQIQVK 169 (514)
Q Consensus 137 ~~~~~---~~~~~~~~~~~~~-~~~i~~Sa~~~~~~~ 169 (514)
....+ ..+..+.+.++.- .+++++||++|.|+.
T Consensus 174 ~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~ 210 (632)
T PRK05506 174 QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVV 210 (632)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCcc
Confidence 11122 2222333343321 268999999999774
No 397
>PLN03126 Elongation factor Tu; Provisional
Probab=99.57 E-value=5.5e-14 Score=142.76 Aligned_cols=173 Identities=14% Similarity=0.130 Sum_probs=112.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCC------CCC-------CCCCCCCcccc---cceeCCeeEEEEEeCCCCccc
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTF------PAN-------VPPVLPPTRLP---EDFYPDRVPITIIDTPSSVED 76 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~------~~~-------~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~ 76 (514)
.+..++|+++|++++|||||+++|++... ... ......+.|+. ..+..++..+.++||||++++
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 46679999999999999999999996321 000 00111233322 234456778999999999998
Q ss_pred hhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCcccc-cchhHhhhhHHHHHHHhc-
Q 010254 77 RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLDLRDEN-QQVSLEQVMMPIMQQFRE- 153 (514)
Q Consensus 77 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~- 153 (514)
.......+..+|++++|+|+..+...+..+ ++..+... ++| +|+++||+|+.+.. ......+.+..+.+.++.
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt~e--~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQTKE--HILLAKQV--GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 887888889999999999998765444332 55556655 778 78899999997631 112222233444444321
Q ss_pred --cCcEEEcCcccccccee-cC-------CCCChhhHHHHHHHHHHHh
Q 010254 154 --IETCIECSALKQIQVKC-FN-------SPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 154 --~~~~i~~Sa~~~~~~~~-f~-------~~l~~~~i~~L~~~i~~~~ 191 (514)
..+++++||.++.++-. .. ..+ .++..|++.|.+..
T Consensus 234 ~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy--~~i~~Ll~~l~~~~ 279 (478)
T PLN03126 234 GDDIPIISGSALLALEALMENPNIKRGDNKWV--DKIYELMDAVDSYI 279 (478)
T ss_pred cCcceEEEEEccccccccccccccccCCCchh--hhHHHHHHHHHHhC
Confidence 23799999999864410 00 001 14667777777654
No 398
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.56 E-value=5.1e-14 Score=124.72 Aligned_cols=91 Identities=18% Similarity=0.116 Sum_probs=60.3
Q ss_pred hhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCc
Q 010254 77 RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIET 156 (514)
Q Consensus 77 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (514)
...+...+++||++++|+|++.+....+.. +...+ .++|+++|+||+|+.+. ....+..+ +.+.. ...
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~~--i~~~~----~~k~~ilVlNK~Dl~~~---~~~~~~~~-~~~~~--~~~ 77 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRNPL--LEKIL----GNKPRIIVLNKADLADP---KKTKKWLK-YFESK--GEK 77 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCChh--hHhHh----cCCCEEEEEehhhcCCh---HHHHHHHH-HHHhc--CCe
Confidence 345677899999999999998765432221 33332 26799999999999644 11111111 11111 126
Q ss_pred EEEcCccccccceecCCCCChhhHHHHHHHHHHHh
Q 010254 157 CIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 157 ~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
++.+||+++. |+++|.+.+.+.+
T Consensus 78 vi~iSa~~~~------------gi~~L~~~l~~~l 100 (171)
T cd01856 78 VLFVNAKSGK------------GVKKLLKAAKKLL 100 (171)
T ss_pred EEEEECCCcc------------cHHHHHHHHHHHH
Confidence 8999999999 9999998887654
No 399
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.56 E-value=1.2e-13 Score=125.43 Aligned_cols=159 Identities=17% Similarity=0.145 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccc---ccceeCCeeEEEEEeCCCCccchh---hH--------HH
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRL---PEDFYPDRVPITIIDTPSSVEDRG---KL--------GE 82 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~---~~~~~~~~~~~~l~Dt~G~~~~~~---~~--------~~ 82 (514)
++|+++|.||||||||+|+|++.+....... .+++|. .......+..+.++||||+.+... .. ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~-~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLS-ASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccC-CCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 4799999999999999999999874333222 223332 222334678899999999875431 11 11
Q ss_pred hhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCC---CCcEEEEEecccCcccccchhH----hhhhHHHHHHHhccC
Q 010254 83 ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEV---KVPVIVVGCKLDLRDENQQVSL----EQVMMPIMQQFREIE 155 (514)
Q Consensus 83 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~ 155 (514)
...++|++|+|+++.. .+-.+ ...+..+++... -.++++|.|++|.......... ......+.+..+.
T Consensus 80 ~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~-- 154 (196)
T cd01852 80 SAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG-- 154 (196)
T ss_pred cCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC--
Confidence 2457899999999876 33332 236666665432 2689999999997654211111 1233444444433
Q ss_pred cEEEcC-----ccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 156 TCIECS-----ALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 156 ~~i~~S-----a~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
.++..+ +..+. ++.+|++.|.+.+++
T Consensus 155 r~~~f~~~~~~~~~~~------------q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 155 RYVAFNNKAKGEEQEQ------------QVKELLAKVESMVKE 185 (196)
T ss_pred eEEEEeCCCCcchhHH------------HHHHHHHHHHHHHHh
Confidence 333333 33444 899999999988875
No 400
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=5.5e-14 Score=112.47 Aligned_cols=162 Identities=11% Similarity=0.120 Sum_probs=116.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc-ceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE-DFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
...++|+.+|-.++||||++..|.-...... .|++-..+ .+..+++.+.+||.+|++.-+..++.|+..+.++||
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~----ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT----IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCccc----ccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 3479999999999999999999988763222 22222221 344668999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceec
Q 010254 93 TYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCF 171 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f 171 (514)
|+|..++...++.+.++...+.... .+.|++|.+||.|+.+......+.+ ..++...-+..-.+.++||.+|.
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d-~leLe~~r~~~W~vqp~~a~~gd----- 164 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQD-KLELERIRDRNWYVQPSCALSGD----- 164 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHH-HhccccccCCccEeeccccccch-----
Confidence 9999998888888876766665431 3689999999999998722222211 11111111111157889999998
Q ss_pred CCCCChhhHHHHHHHHHHHhc
Q 010254 172 NSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 172 ~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|+.+=..++..++.
T Consensus 165 -------gL~eglswlsnn~~ 178 (180)
T KOG0071|consen 165 -------GLKEGLSWLSNNLK 178 (180)
T ss_pred -------hHHHHHHHHHhhcc
Confidence 88777777766543
No 401
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.55 E-value=1.3e-13 Score=131.62 Aligned_cols=92 Identities=17% Similarity=0.146 Sum_probs=61.5
Q ss_pred hhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCc
Q 010254 77 RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIET 156 (514)
Q Consensus 77 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (514)
...+...++.+|+|++|+|+..+.+..... +...+ .++|+|+|+||+|+.+. .......+.+ +..+ .+
T Consensus 12 ~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~--i~~~l----~~kp~IiVlNK~DL~~~---~~~~~~~~~~-~~~~--~~ 79 (276)
T TIGR03596 12 RREIKEKLKLVDVVIEVLDARIPLSSRNPM--IDEIR----GNKPRLIVLNKADLADP---AVTKQWLKYF-EEKG--IK 79 (276)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCCCCChh--HHHHH----CCCCEEEEEEccccCCH---HHHHHHHHHH-HHcC--Ce
Confidence 345677899999999999998775543321 33333 26899999999999653 1111111112 2211 26
Q ss_pred EEEcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 157 CIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 157 ~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
++.+||+++. |++.|++.+.+.++
T Consensus 80 vi~iSa~~~~------------gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 80 ALAINAKKGK------------GVKKIIKAAKKLLK 103 (276)
T ss_pred EEEEECCCcc------------cHHHHHHHHHHHHH
Confidence 8999999998 99999888876554
No 402
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.55 E-value=5.1e-14 Score=143.75 Aligned_cols=152 Identities=20% Similarity=0.182 Sum_probs=97.4
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--------------C------------------CCCccccc---
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPP--------------V------------------LPPTRLPE--- 56 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~--------------~------------------~~~tt~~~--- 56 (514)
..+..++|+|+|++++|||||+++|+... ..+.. . ..+.|+..
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~--g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~ 100 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDT--KQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYR 100 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhc--CCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEE
Confidence 34677999999999999999999998654 11111 0 01122222
Q ss_pred ceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccccc
Q 010254 57 DFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ 136 (514)
Q Consensus 57 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~ 136 (514)
.+..++..+.++||||++.+...+...+..+|++++|+|++.+..-+... ....+.... ..|+|+|+||+|+.+. +
T Consensus 101 ~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~--~~~l~~~lg-~~~iIvvvNKiD~~~~-~ 176 (474)
T PRK05124 101 YFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRR--HSFIATLLG-IKHLVVAVNKMDLVDY-S 176 (474)
T ss_pred EeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchH--HHHHHHHhC-CCceEEEEEeeccccc-h
Confidence 23355778999999999887766666789999999999998654322221 112222221 2579999999999753 1
Q ss_pred chhHhhh---hHHHHHHHh--ccCcEEEcCccccccce
Q 010254 137 QVSLEQV---MMPIMQQFR--EIETCIECSALKQIQVK 169 (514)
Q Consensus 137 ~~~~~~~---~~~~~~~~~--~~~~~i~~Sa~~~~~~~ 169 (514)
....++. +..+...++ ...+++++||++|.|+.
T Consensus 177 ~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~ 214 (474)
T PRK05124 177 EEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVV 214 (474)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcc
Confidence 1222222 222233332 12379999999999663
No 403
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.55 E-value=1.2e-13 Score=118.26 Aligned_cols=53 Identities=21% Similarity=0.154 Sum_probs=39.4
Q ss_pred HHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc
Q 010254 80 LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 80 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 134 (514)
....++++|++++|+|++++.+..+. .+...+.....++|+++|+||+|+.+.
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~--~l~~~l~~~~~~k~~iivlNK~DL~~~ 57 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPP--DLERYVKEVDPRKKNILLLNKADLLTE 57 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCH--HHHHHHHhccCCCcEEEEEechhcCCH
Confidence 45678999999999999887664432 255555443347899999999999654
No 404
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.54 E-value=5.3e-14 Score=141.50 Aligned_cols=150 Identities=22% Similarity=0.179 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------CC------------------CCCCcccc---cceeCCee
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANV------------PP------------------VLPPTRLP---EDFYPDRV 63 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~------------~~------------------~~~~tt~~---~~~~~~~~ 63 (514)
+||+|+|++++|||||+++|+...-.... .. ...+.|+. ..+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999754311000 00 01112222 12335677
Q ss_pred EEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccccc--chhHh
Q 010254 64 PITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ--QVSLE 141 (514)
Q Consensus 64 ~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~--~~~~~ 141 (514)
.+.++||||++++...+...+..+|++++|+|+..+...+..+ ....+.... ..++|+|+||+|+.+... .....
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~--~~~~~~~~~-~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR--HSYIASLLG-IRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH--HHHHHHHcC-CCcEEEEEEecccccchHHHHHHHH
Confidence 8999999999988777777899999999999998654333222 222333331 346899999999975311 11112
Q ss_pred hhhHHHHHHHhcc-CcEEEcCccccccce
Q 010254 142 QVMMPIMQQFREI-ETCIECSALKQIQVK 169 (514)
Q Consensus 142 ~~~~~~~~~~~~~-~~~i~~Sa~~~~~~~ 169 (514)
+.+..+.+.++.. .+++++||++|.|+.
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~ 186 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVV 186 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCc
Confidence 2223333443321 269999999999653
No 405
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.2e-14 Score=122.79 Aligned_cols=121 Identities=16% Similarity=0.223 Sum_probs=105.8
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+|++++|+.|.|||+++++.+.++|...+.+|.+..........+.|...+-.|||+|+|.+..+. ..++-.+.+.
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglr--dgyyI~~qcA 86 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLR--DGYYIQGQCA 86 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccc--cccEEeccee
Confidence 46899999999999999999999999999999999987776666666566788899999999998765 4667788899
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
+++||++.+-+..++.+|..++.+.. .++|++++|||.|....
T Consensus 87 iimFdVtsr~t~~n~~rwhrd~~rv~----~NiPiv~cGNKvDi~~r 129 (216)
T KOG0096|consen 87 IIMFDVTSRFTYKNVPRWHRDLVRVR----ENIPIVLCGNKVDIKAR 129 (216)
T ss_pred EEEeeeeehhhhhcchHHHHHHHHHh----cCCCeeeeccceecccc
Confidence 99999999999999999999988876 27999999999997763
No 406
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.54 E-value=1.9e-13 Score=119.03 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=54.2
Q ss_pred CEEEEEEeCCCcccHHHHHHHHH-HHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccc
Q 010254 88 DAVVLTYACDRPETLDELSTFWL-PELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (514)
Q Consensus 88 d~ii~v~d~~~~~s~~~~~~~~~-~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~ 166 (514)
|++++|+|+.++.+..... +. ..+... ++|+|+|+||+|+.+. ....+....+.... ...++.+||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~--i~~~~~~~~--~~p~IiVlNK~Dl~~~---~~~~~~~~~~~~~~--~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRSPD--IERVLIKEK--GKKLILVLNKADLVPK---EVLRKWLAYLRHSY--PTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccCHH--HHHHHHhcC--CCCEEEEEechhcCCH---HHHHHHHHHHHhhC--CceEEEEeccCCc
Confidence 7899999998876554321 22 234333 7999999999999654 11111112222222 2368999999999
Q ss_pred cceecCCCCChhhHHHHHHHHHHH
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~~ 190 (514)
|++.|++.+.+.
T Consensus 72 ------------gi~~L~~~i~~~ 83 (155)
T cd01849 72 ------------GIEKKESAFTKQ 83 (155)
T ss_pred ------------ChhhHHHHHHHH
Confidence 999998887654
No 407
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.54 E-value=8.8e-14 Score=124.42 Aligned_cols=130 Identities=17% Similarity=0.114 Sum_probs=82.4
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCCh----------hHHHhhhc
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE----------EAVAKLLS 436 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~----------~~~~~~~~ 436 (514)
+..++|+|+|++|+|||||+|+|++..+...+.++.+.+..+.....+ + .+.+|||+|. +.+..+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~liDtpG~~~~~~~~~~~~~~~~~~- 91 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-D--GFRLVDLPGYGYAKVSKEEKEKWQKLI- 91 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-C--cEEEEeCCCCccccCChhHHHHHHHHH-
Confidence 456799999999999999999999987544444444444444444444 2 4678999993 2333322
Q ss_pred Cccccc---cCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc---chhhHHHHHHHc
Q 010254 437 NKDSLA---ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM---AIQDSTRVFTFL 508 (514)
Q Consensus 437 ~~~~~~---~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~ 508 (514)
..+++ .+|++++|+|++++-+..... ++..+.. . ++|+++|+||+|+..... ..++.++.++..
T Consensus 92 -~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~-~-----~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~ 161 (179)
T TIGR03598 92 -EEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE-R-----GIPVLIVLTKADKLKKSELNKQLKKIKKALKKD 161 (179)
T ss_pred -HHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH-c-----CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc
Confidence 12333 468999999998864433332 2222322 2 699999999999975322 234444444443
No 408
>PRK12288 GTPase RsgA; Reviewed
Probab=99.54 E-value=1.3e-13 Score=134.41 Aligned_cols=86 Identities=15% Similarity=0.206 Sum_probs=61.0
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcc
Q 010254 84 LRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (514)
Q Consensus 84 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 163 (514)
..++|.+++|++.+...++..++. |+..+... ++|++||+||+|+.+........+. ....+.++ .+++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr-~L~~a~~~--~i~~VIVlNK~DL~~~~~~~~~~~~-~~~y~~~g--~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDR-YLVACETL--GIEPLIVLNKIDLLDDEGRAFVNEQ-LDIYRNIG--YRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHH-HHHHHHhc--CCCEEEEEECccCCCcHHHHHHHHH-HHHHHhCC--CeEEEEeCC
Confidence 578999999999987788888876 76666654 7999999999999764111111111 11222333 289999999
Q ss_pred ccccceecCCCCChhhHHHHHHHH
Q 010254 164 KQIQVKCFNSPLQPSEIVGVKRVV 187 (514)
Q Consensus 164 ~~~~~~~f~~~l~~~~i~~L~~~i 187 (514)
++. |+++|++.+
T Consensus 192 tg~------------GideL~~~L 203 (347)
T PRK12288 192 TGE------------GLEELEAAL 203 (347)
T ss_pred CCc------------CHHHHHHHH
Confidence 999 888876654
No 409
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.54 E-value=1.1e-13 Score=139.37 Aligned_cols=166 Identities=14% Similarity=0.107 Sum_probs=107.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccce--------------------eC-------------
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDF--------------------YP------------- 60 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~--------------------~~------------- 60 (514)
...++|+++|.-..|||||+.+|++..-.........+.|+..-| ..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 345899999999999999999999754221111111122211100 00
Q ss_pred ---CeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCc-ccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccccc
Q 010254 61 ---DRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRP-ETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ 136 (514)
Q Consensus 61 ---~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~-~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~ 136 (514)
-...+.++||||++.+...+...+..+|++++|+|++.+ ...+..+ .+..+.... -.|+|+|+||+|+.+..+
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~e--hl~i~~~lg-i~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSE--HLAAVEIMK-LKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHH--HHHHHHHcC-CCcEEEEEecccccCHHH
Confidence 024689999999998887778888999999999999864 2222222 223333331 246899999999986422
Q ss_pred chhHhhhhHHHHHHH-hccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 137 QVSLEQVMMPIMQQF-REIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 137 ~~~~~~~~~~~~~~~-~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
.....+.+..+...+ ....+++++||++|. |++.|++.|.+.++..
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~------------nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKY------------NIDVVLEYICTQIPIP 235 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCC------------CHHHHHHHHHhhCCCC
Confidence 212122222222221 123489999999999 9999999999877754
No 410
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.53 E-value=2.5e-13 Score=130.22 Aligned_cols=98 Identities=17% Similarity=0.205 Sum_probs=63.7
Q ss_pred CCCCc-cchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHH
Q 010254 70 TPSSV-EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIM 148 (514)
Q Consensus 70 t~G~~-~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~ 148 (514)
.||+. .....+...++++|+|++|+|+..+.+..... +...+ . ++|+++|.||+|+.+. .. ...+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~--l~~~~-~---~kp~iiVlNK~DL~~~---~~----~~~~~ 73 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPM--IDKII-G---NKPRLLILNKSDLADP---EV----TKKWI 73 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChh--HHHHh-C---CCCEEEEEEchhcCCH---HH----HHHHH
Confidence 35542 22344677899999999999998776543321 32322 2 6899999999999643 11 12222
Q ss_pred HHHhc-cCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 149 QQFRE-IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 149 ~~~~~-~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
+.+.. ..+++.+||+++. |++.|++.+.+.++
T Consensus 74 ~~~~~~~~~vi~vSa~~~~------------gi~~L~~~l~~~l~ 106 (287)
T PRK09563 74 EYFEEQGIKALAINAKKGQ------------GVKKILKAAKKLLK 106 (287)
T ss_pred HHHHHcCCeEEEEECCCcc------------cHHHHHHHHHHHHH
Confidence 22211 1268999999998 99998888776543
No 411
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.53 E-value=1.8e-13 Score=130.49 Aligned_cols=140 Identities=18% Similarity=0.218 Sum_probs=94.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCcc--------------c---ccceeCCeeEEEEEeCCCCccchhh
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTR--------------L---PEDFYPDRVPITIIDTPSSVEDRGK 79 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~-~~~~~~~tt--------------~---~~~~~~~~~~~~l~Dt~G~~~~~~~ 79 (514)
+|+|+|.+|+|||||+|+|+....... ......+++ + ...+..++..+.+|||||..++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 589999999999999999986432111 111111111 1 1123356788999999999887777
Q ss_pred HHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEE-
Q 010254 80 LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCI- 158 (514)
Q Consensus 80 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i- 158 (514)
+..++..+|++++|+|++.+....... ....+... ++|+++++||+|+... ..++....+...++. +++
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~--~~~~~~~~--~~p~iivvNK~D~~~~----~~~~~~~~l~~~~~~--~~~~ 150 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEK--LWEFADEA--GIPRIIFINKMDRERA----DFDKTLAALQEAFGR--PVVP 150 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECCccCCC----CHHHHHHHHHHHhCC--CeEE
Confidence 888999999999999998765544332 33445554 7999999999998754 233444556666654 343
Q ss_pred -EcCcccccc
Q 010254 159 -ECSALKQIQ 167 (514)
Q Consensus 159 -~~Sa~~~~~ 167 (514)
.+...++.+
T Consensus 151 ~~ip~~~~~~ 160 (268)
T cd04170 151 LQLPIGEGDD 160 (268)
T ss_pred EEecccCCCc
Confidence 445666663
No 412
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.52 E-value=3.2e-13 Score=134.07 Aligned_cols=78 Identities=24% Similarity=0.381 Sum_probs=54.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccce--------------------------e-CCeeEEEEEe
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDF--------------------------Y-PDRVPITIID 69 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~--------------------------~-~~~~~~~l~D 69 (514)
++|+|+|.||||||||||+|++.++.. ...+.+|+.... . ....++.+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~---~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D 78 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEI---ANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELID 78 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccc---cCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEE
Confidence 589999999999999999999987422 222333311100 0 1236789999
Q ss_pred CCCCccc----hhhHHH---hhhccCEEEEEEeCC
Q 010254 70 TPSSVED----RGKLGE---ELRRADAVVLTYACD 97 (514)
Q Consensus 70 t~G~~~~----~~~~~~---~~~~ad~ii~v~d~~ 97 (514)
|||+... ...... .++++|++++|+|+.
T Consensus 79 ~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 79 VAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 9997432 222233 489999999999996
No 413
>PRK00089 era GTPase Era; Reviewed
Probab=99.52 E-value=1.2e-13 Score=133.77 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=89.4
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHh------hhcCcccccc
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK------LLSNKDSLAA 443 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~------~~~~~~~~~~ 443 (514)
-.|+++|+||||||||+|+|++.....++..+.+++..+..+... +...+.++||+|...... .......+..
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~ 84 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD 84 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhc
Confidence 359999999999999999999999877776666666666555544 345677899999422110 0011346789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-ccchhhHHHHHHHcC
Q 010254 444 CDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLV 509 (514)
Q Consensus 444 ~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~ 509 (514)
+|++++|+|+++. +.....++....... +.|+++|+||+|+... ........++++.++
T Consensus 85 ~D~il~vvd~~~~--~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~ 144 (292)
T PRK00089 85 VDLVLFVVDADEK--IGPGDEFILEKLKKV-----KTPVILVLNKIDLVKDKEELLPLLEELSELMD 144 (292)
T ss_pred CCEEEEEEeCCCC--CChhHHHHHHHHhhc-----CCCEEEEEECCcCCCCHHHHHHHHHHHHhhCC
Confidence 9999999999984 333334433333222 6899999999999843 333445555555443
No 414
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=8e-14 Score=118.50 Aligned_cols=118 Identities=25% Similarity=0.281 Sum_probs=101.0
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
....+|+++|--|+||||++.+|..++...+ .||.| +.+..+.+. ...+.+||..|++.++.++ +.++++.++
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~yk--n~~f~vWDvGGq~k~R~lW--~~Y~~~t~~ 87 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYK--NISFTVWDVGGQEKLRPLW--KHYFQNTQG 87 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEc--ceEEEEEecCCCcccccch--hhhccCCcE
Confidence 3458999999999999999999999988777 47777 677777665 5677799999999999998 789999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
+|+|.|++|++.+.+....+..+...... .+.|+++.+||.|+..
T Consensus 88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l--~~~~llv~aNKqD~~~ 132 (181)
T KOG0070|consen 88 LIFVVDSSDRERIEEAKEELHRMLAEPEL--RNAPLLVFANKQDLPG 132 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcCccc--CCceEEEEechhhccc
Confidence 99999999999999998887777665542 2799999999999886
No 415
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.51 E-value=1.1e-13 Score=122.45 Aligned_cols=114 Identities=16% Similarity=0.130 Sum_probs=79.9
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECC-CCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP-GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
.|+++|++|||||||+++|.+.++...+.++.+.......+... .....+.+|||+|.+.+..++ ...+..+|++++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~--~~~~~~~d~il~ 79 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMR--ARGASLTDIAIL 79 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHH--HHHHhhcCEEEE
Confidence 48999999999999999999988776554444433333334332 124566789999998887766 456789999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
|+|+++....+... .+..+... ++|+++|+||+|+..
T Consensus 80 v~d~~~~~~~~~~~-~~~~~~~~------~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 80 VVAADDGVMPQTIE-AIKLAKAA------NVPFIVALNKIDKPN 116 (168)
T ss_pred EEECCCCccHHHHH-HHHHHHHc------CCCEEEEEEceeccc
Confidence 99999743211111 11222222 689999999999875
No 416
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.51 E-value=5e-14 Score=122.80 Aligned_cols=118 Identities=18% Similarity=0.277 Sum_probs=77.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHh---hhccCEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEE---LRRADAVVL 92 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~---~~~ad~ii~ 92 (514)
+-.|+|+|++|+|||+|+.+|..+.......+..+..+... -...+.++.++|+||+++.+...... ...+-+|||
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf 81 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF 81 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCceEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence 35699999999999999999999976555555433322211 12346689999999999887765554 889999999
Q ss_pred EEeCCC-cccHHHHHHHHHHHHHhc---CCCCcEEEEEecccCccc
Q 010254 93 TYACDR-PETLDELSTFWLPELRRL---EVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 93 v~d~~~-~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~~~ 134 (514)
|+|.+. .....++.++++..+... ....|++|++||+|+...
T Consensus 82 vvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 82 VVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 999874 344555665666665543 247899999999999775
No 417
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.51 E-value=6.4e-14 Score=142.36 Aligned_cols=115 Identities=18% Similarity=0.230 Sum_probs=83.1
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCC-CCccEEEEEEECCCCcEEEEEEecCChhHHHhh------hcCccc
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPT-TDERYAVNVVDQPGGTKKTVVLREIPEEAVAKL------LSNKDS 440 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~------~~~~~~ 440 (514)
..++|+++|.+|||||||+|+|++.++..+...+ .+.++....+.++ + ..+.+|||+|.+.+... ..+...
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~-g-~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD-G-IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC-C-eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 4489999999999999999999998865444333 3334444455554 3 45678999997543211 122457
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 441 LAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 441 ~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
++.+|++++|||++++.+++....|.. . .+.|+++|+||+|+..
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~----~-----~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE----L-----KDKPVIVVLNKADLTG 335 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh----c-----CCCCcEEEEEhhhccc
Confidence 889999999999999887775544433 1 1689999999999965
No 418
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.51 E-value=4e-13 Score=138.34 Aligned_cols=116 Identities=13% Similarity=0.088 Sum_probs=82.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC------C-------------Cccc---ccceeCCeeEEEEEeCC
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVL------P-------------PTRL---PEDFYPDRVPITIIDTP 71 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~------~-------------~tt~---~~~~~~~~~~~~l~Dt~ 71 (514)
.+.-+|+|+|++|+|||||+++|+...-.....+.. . +.++ ...+..+++.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 345699999999999999999997422111100000 0 1111 12344668899999999
Q ss_pred CCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcc
Q 010254 72 SSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD 133 (514)
Q Consensus 72 G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~ 133 (514)
|+.++......+++.+|++|+|+|++++..... ..+....+.. ++|+++++||+|+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~~--~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT--RKLMEVCRLR--DTPIFTFINKLDRDG 145 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHH--HHHHHHHHhc--CCCEEEEEECCcccc
Confidence 999888878888999999999999987643322 2355555555 899999999999865
No 419
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.51 E-value=3.2e-13 Score=125.54 Aligned_cols=157 Identities=20% Similarity=0.245 Sum_probs=106.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc----ceeCCeeEEEEEeCCCCccchh-------hHHHhhhc
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE----DFYPDRVPITIIDTPSSVEDRG-------KLGEELRR 86 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~----~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~ 86 (514)
-|.+||-||||||||++++...+. .+. ..+-||+.- .-......|++-|.||+.+... ..-.-+++
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP--KIa-dYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP--KIA-DYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC--ccc-CCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 578999999999999999998773 322 234455221 1114566799999999875543 22345789
Q ss_pred cCEEEEEEeCCCccc---HHHHHHHHHHHHHhcC---CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEc
Q 010254 87 ADAVVLTYACDRPET---LDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIEC 160 (514)
Q Consensus 87 ad~ii~v~d~~~~~s---~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (514)
+-++++|+|++..+. .++... +..++.++. .++|.+||+||+|+..+ ....+.....+.+..+....++ +
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~-i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~--~e~~~~~~~~l~~~~~~~~~~~-I 313 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQT-IRNELEKYSPKLAEKPRIVVLNKIDLPLD--EEELEELKKALAEALGWEVFYL-I 313 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHH-HHHHHHHhhHHhccCceEEEEeccCCCcC--HHHHHHHHHHHHHhcCCCccee-e
Confidence 999999999986443 555554 667777764 47999999999996554 1122222233333333222223 9
Q ss_pred CccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 161 SALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 161 Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
||.++. |++.|...+.+.+..
T Consensus 314 Sa~t~~------------g~~~L~~~~~~~l~~ 334 (369)
T COG0536 314 SALTRE------------GLDELLRALAELLEE 334 (369)
T ss_pred ehhccc------------CHHHHHHHHHHHHHH
Confidence 999999 999999988877654
No 420
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.51 E-value=1.9e-13 Score=132.16 Aligned_cols=167 Identities=19% Similarity=0.223 Sum_probs=95.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCCCCCccccccee-CCeeEEEEEeCCCCccchhhHHHh-----h
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADT---FPANVPPVLPPTRLPEDFY-PDRVPITIIDTPSSVEDRGKLGEE-----L 84 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~---~~~~~~~~~~~tt~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~-----~ 84 (514)
..+++|+|+|.+|+|||||||+|.|-. ...+.++...+|+.+..|. +....+.+||.||..........| +
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 357999999999999999999998732 1123444444444444443 445679999999987655444444 6
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccC--ccc----ccchhHhhhhHHH----HHHHhc-
Q 010254 85 RRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDL--RDE----NQQVSLEQVMMPI----MQQFRE- 153 (514)
Q Consensus 85 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl--~~~----~~~~~~~~~~~~~----~~~~~~- 153 (514)
...|.+|++.+ .+-+..++. +...++++ ++|+++|-||+|. ... .+.-..++.++.+ .+.+..
T Consensus 113 ~~yD~fiii~s--~rf~~ndv~--La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 113 YRYDFFIIISS--ERFTENDVQ--LAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp GG-SEEEEEES--SS--HHHHH--HHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred cccCEEEEEeC--CCCchhhHH--HHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 68999999887 444444444 88889888 8999999999995 111 0111112222222 222221
Q ss_pred ---cCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCccc
Q 010254 154 ---IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREGVN 196 (514)
Q Consensus 154 ---~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~~ 196 (514)
..++|-+|+..-. .-++..|.+++.+.+|....
T Consensus 187 gv~~P~VFLVS~~dl~----------~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLS----------KYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp T-SS--EEEB-TTTTT----------STTHHHHHHHHHHHS-GGGH
T ss_pred CCCcCceEEEeCCCcc----------cCChHHHHHHHHHHhHHHHH
Confidence 1268889987643 11789999999998886543
No 421
>PRK13351 elongation factor G; Reviewed
Probab=99.51 E-value=3.8e-13 Score=144.88 Aligned_cols=116 Identities=18% Similarity=0.153 Sum_probs=85.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC----CCC------C-----CCCcccc---cceeCCeeEEEEEeCCCCccc
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPAN----VPP------V-----LPPTRLP---EDFYPDRVPITIIDTPSSVED 76 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~----~~~------~-----~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~ 76 (514)
+-.+|+|+|..|+|||||+++|+...-... +.. . ..+.|+. ..+.+.+..+.+|||||+.++
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 457999999999999999999986321000 000 0 0112221 234456889999999999988
Q ss_pred hhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc
Q 010254 77 RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 77 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 134 (514)
...+..+++.+|++++|+|++++...+... ....+... ++|+++|+||+|+...
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~--~~~~~~~~--~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTET--VWRQADRY--GIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HHHHHHhc--CCCEEEEEECCCCCCC
Confidence 888889999999999999999877665543 33455555 7999999999998754
No 422
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.50 E-value=2.6e-13 Score=135.18 Aligned_cols=138 Identities=18% Similarity=0.061 Sum_probs=92.8
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhH----HHhhh-cCccccccC
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA----VAKLL-SNKDSLAAC 444 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~----~~~~~-~~~~~~~~~ 444 (514)
..|+++|.||||||||+|+|++.+......+.+|.......+.+. ....+.++|++|..+ ...+. .....++++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 369999999999999999999887554433444444444445444 345677899999522 11111 112356789
Q ss_pred cEEEEEEeCCCh---hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCcc
Q 010254 445 DIAVFVHDSSDE---SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVL 512 (514)
Q Consensus 445 d~vilv~D~~~~---~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 512 (514)
+++++|+|+++. ++++....|..++..+.... .++|++||+||+|+... ....+++++.++.++
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L-~~kP~IVV~NK~DL~~~---~e~l~~l~~~l~~~i 304 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRL-LERPQIVVANKMDLPEA---EENLEEFKEKLGPKV 304 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhc-cCCcEEEEEeCCCCcCC---HHHHHHHHHHhCCcE
Confidence 999999999864 67788888887777654221 26999999999998542 234556666655443
No 423
>PRK00098 GTPase RsgA; Reviewed
Probab=99.50 E-value=3.3e-13 Score=129.91 Aligned_cols=85 Identities=20% Similarity=0.225 Sum_probs=59.7
Q ss_pred hhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCc
Q 010254 83 ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSA 162 (514)
Q Consensus 83 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 162 (514)
.+.++|++++|+|++++.........|+..+... ++|+++|+||+|+.++ . .... ......+.++. +++++||
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~--~ip~iIVlNK~DL~~~-~-~~~~-~~~~~~~~~g~--~v~~vSA 149 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN--GIKPIIVLNKIDLLDD-L-EEAR-ELLALYRAIGY--DVLELSA 149 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEhHHcCCC-H-HHHH-HHHHHHHHCCC--eEEEEeC
Confidence 4689999999999988876655544577777665 8999999999999643 1 1111 11223333332 7899999
Q ss_pred cccccceecCCCCChhhHHHHHHH
Q 010254 163 LKQIQVKCFNSPLQPSEIVGVKRV 186 (514)
Q Consensus 163 ~~~~~~~~f~~~l~~~~i~~L~~~ 186 (514)
+++. |+++|++.
T Consensus 150 ~~g~------------gi~~L~~~ 161 (298)
T PRK00098 150 KEGE------------GLDELKPL 161 (298)
T ss_pred CCCc------------cHHHHHhh
Confidence 9998 88776543
No 424
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.50 E-value=4.4e-13 Score=115.92 Aligned_cols=117 Identities=25% Similarity=0.350 Sum_probs=86.4
Q ss_pred EeCCCCCChHHHHHHhhCCCC-CCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEEEe
Q 010254 374 VFGPKKAGKSVLLNSFLGRPF-SDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHD 452 (514)
Q Consensus 374 iiG~~~vGKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D 452 (514)
++|++|+|||||++++.+... .....++. .+................+||++|...+.... ...++.+|++++|+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~~~~i~v~d 77 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLR--RLYYRGADGIILVYD 77 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHH--HHHhcCCCEEEEEEE
Confidence 589999999999999999887 44443444 55555555554345667799999987776554 467789999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 010254 453 SSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 495 (514)
Q Consensus 453 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 495 (514)
++++.++.....|.......... .+.|+++|+||+|+....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivv~nk~D~~~~~ 118 (157)
T cd00882 78 VTDRESFENVKEWLLLILINKEG--ENIPIILVGNKIDLPEER 118 (157)
T ss_pred CcCHHHHHHHHHHHHHHHHhhcc--CCCcEEEEEecccccccc
Confidence 99999998888873222211111 279999999999987644
No 425
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.49 E-value=2.8e-13 Score=134.39 Aligned_cols=135 Identities=19% Similarity=0.147 Sum_probs=91.5
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhH-------H-HhhhcCcccc
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA-------V-AKLLSNKDSL 441 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~-------~-~~~~~~~~~~ 441 (514)
..|++||.||||||||+|+|++.+......|.+|.....-.+... ....+.++||+|..+ . ..+ ...+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~---l~~i 235 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRF---LKHL 235 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHH---HHHH
Confidence 369999999999999999999877533333444444444455554 445577889999532 1 112 2467
Q ss_pred ccCcEEEEEEeCC---ChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcC
Q 010254 442 AACDIAVFVHDSS---DESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV 509 (514)
Q Consensus 442 ~~~d~vilv~D~~---~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 509 (514)
+++|++++|+|++ +.++++....|+.++..+.... .+.|+++|+||+|+.......+...++++.++
T Consensus 236 ~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L-~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~ 305 (390)
T PRK12298 236 ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKL-AEKPRWLVFNKIDLLDEEEAEERAKAIVEALG 305 (390)
T ss_pred HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhh-cCCCEEEEEeCCccCChHHHHHHHHHHHHHhC
Confidence 8999999999998 4566777788877776653211 16899999999999754333344445555433
No 426
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.49 E-value=1.5e-13 Score=122.61 Aligned_cols=121 Identities=23% Similarity=0.183 Sum_probs=79.3
Q ss_pred EeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHh----hh-cCccccccCcEEE
Q 010254 374 VFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK----LL-SNKDSLAACDIAV 448 (514)
Q Consensus 374 iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~----~~-~~~~~~~~~d~vi 448 (514)
++|++|||||||+|+|.+.+......+..+.......+.+. ....+.+|||+|...... +. .....++++|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 58999999999999999987522221222222333334443 245677899999633211 11 0023467899999
Q ss_pred EEEeCCCh------hhHHHHHHHHHHHHhcCCC----CCCCCcEEEEEeCCCCcccc
Q 010254 449 FVHDSSDE------SSWKRATELLVEVASYGED----TGFEVPCLIVAAKDDLDSFA 495 (514)
Q Consensus 449 lv~D~~~~------~s~~~~~~~~~~~~~~~~~----~~~~~p~ilv~nK~Dl~~~~ 495 (514)
+|+|+++. .+++.+..|...+...... ...+.|+++|+||+|+....
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 136 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE 136 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh
Confidence 99999988 5788887777776543211 00169999999999997643
No 427
>PRK04213 GTP-binding protein; Provisional
Probab=99.49 E-value=9.5e-14 Score=126.82 Aligned_cols=129 Identities=15% Similarity=0.081 Sum_probs=80.6
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCC-----------hhHHHhhhcC
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIP-----------EEAVAKLLSN 437 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g-----------~~~~~~~~~~ 437 (514)
.++|+++|++|||||||+|+|.+..+...+.+ ++++....+... .+.+|||+| ++.+...+..
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 47899999999999999999999886544434 333333333332 467899999 5666654410
Q ss_pred --ccccccCcEEEEEEeCCChhhH-H--------HHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHH
Q 010254 438 --KDSLAACDIAVFVHDSSDESSW-K--------RATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFT 506 (514)
Q Consensus 438 --~~~~~~~d~vilv~D~~~~~s~-~--------~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 506 (514)
......++++++|+|.++...+ + .....+....... ++|+++|+||+|+...+ .....++++
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~p~iiv~NK~Dl~~~~--~~~~~~~~~ 155 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL-----GIPPIVAVNKMDKIKNR--DEVLDEIAE 155 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc-----CCCeEEEEECccccCcH--HHHHHHHHH
Confidence 1123456888999988643211 0 0111111222211 69999999999996533 334566777
Q ss_pred HcCC
Q 010254 507 FLVM 510 (514)
Q Consensus 507 ~~~~ 510 (514)
.+++
T Consensus 156 ~~~~ 159 (201)
T PRK04213 156 RLGL 159 (201)
T ss_pred HhcC
Confidence 7775
No 428
>PRK12739 elongation factor G; Reviewed
Probab=99.48 E-value=7.3e-13 Score=142.18 Aligned_cols=116 Identities=18% Similarity=0.109 Sum_probs=85.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCC--CC------------CCCCcccc---cceeCCeeEEEEEeCCCCccc
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFP-ANV--PP------------VLPPTRLP---EDFYPDRVPITIIDTPSSVED 76 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~-~~~--~~------------~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~ 76 (514)
+-.+|+|+|++|+|||||+|+|+...-. ... +. ...++|+. ..+..++..+.++||||+.++
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 4568999999999999999999753110 001 11 12234422 234456889999999999888
Q ss_pred hhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc
Q 010254 77 RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 77 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 134 (514)
...+..+++.+|++++|+|+..+...+.. .++..+.+. ++|+|+++||+|+...
T Consensus 87 ~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~~--~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 87 TIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADKY--GVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 77788899999999999999876554433 255666665 7999999999998754
No 429
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.48 E-value=3.8e-13 Score=119.54 Aligned_cols=117 Identities=17% Similarity=0.146 Sum_probs=77.3
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEE-EEEEECCCCcEEEEEEecCChhHHH---------hhhcCc
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYA-VNVVDQPGGTKKTVVLREIPEEAVA---------KLLSNK 438 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~dt~g~~~~~---------~~~~~~ 438 (514)
.++|+++|.+|+|||||+|+|++.........+.++... ...+... ...+.+|||+|..... ......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD--GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC--CeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 478999999999999999999998755444333333222 2233333 3446789999953221 011123
Q ss_pred cccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 439 DSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 439 ~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
..++.+|++++|+|++++.+..... ++..+... +.|+++|+||+|+...
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~~------~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILEE------GKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHhc------CCCEEEEEeccccCCc
Confidence 4567999999999999886654432 22222222 6899999999999764
No 430
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.48 E-value=1.4e-13 Score=112.07 Aligned_cols=140 Identities=14% Similarity=0.214 Sum_probs=116.3
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||-++|++.+|||||+-++.++++...+..+.|..+.-+++.+.+....+-+||..|++++..+. +-..+++-++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~l--Piac~dsvaI 96 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINML--PIACKDSVAI 96 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccC--ceeecCcEEE
Confidence 45899999999999999999999999988887888999999999988555667799999999888766 6788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc------ccchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF------AMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~ 513 (514)
+++||.+.++++..+..|+.+.+..... -+| |+||+|.|+.-. .....+++.+|+-++++.|
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~~Nkt---AiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~ 164 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARGLNKT---AIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLF 164 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhccCCc---cce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEE
Confidence 9999999999999999999998776421 245 578999996421 1345678889998887654
No 431
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.48 E-value=9.2e-14 Score=121.26 Aligned_cols=116 Identities=18% Similarity=0.243 Sum_probs=78.3
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCCh-----hHHHhhhcCccccccCc
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE-----EAVAKLLSNKDSLAACD 445 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~-----~~~~~~~~~~~~~~~~d 445 (514)
+|+++|++|||||||+|++.+.... ...+.+ +.+... -+|||+|. +.+..+. ..++++|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~---~~~~~ad 66 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALI---TTLQDVD 66 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--CccceE-------EEECCC----CcccCCccccCCHHHHHHHH---HHHhcCC
Confidence 6999999999999999998875421 112222 222211 15899996 3333332 3578999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCC--ccc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM--VLY 513 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~ 513 (514)
++++|+|+++..++ +..|+..+. .+.|+++++||+|+... ......++++++++ ++|
T Consensus 67 ~il~v~d~~~~~s~--~~~~~~~~~-------~~~~ii~v~nK~Dl~~~--~~~~~~~~~~~~~~~~p~~ 125 (158)
T PRK15467 67 MLIYVHGANDPESR--LPAGLLDIG-------VSKRQIAVISKTDMPDA--DVAATRKLLLETGFEEPIF 125 (158)
T ss_pred EEEEEEeCCCcccc--cCHHHHhcc-------CCCCeEEEEEccccCcc--cHHHHHHHHHHcCCCCCEE
Confidence 99999999988765 334544431 15899999999998652 34556677777775 554
No 432
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.48 E-value=5.1e-13 Score=143.49 Aligned_cols=143 Identities=19% Similarity=0.132 Sum_probs=100.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCC--------------CCCccc---ccceeCCeeEEEEEeCCCCccch
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPA-NVPPV--------------LPPTRL---PEDFYPDRVPITIIDTPSSVEDR 77 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~-~~~~~--------------~~~tt~---~~~~~~~~~~~~l~Dt~G~~~~~ 77 (514)
--+|+|+|++|+|||||+|+|+...-.. ..... ..++|+ ...+..++..+.+|||||+.++.
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT 89 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence 4589999999999999999997532111 11111 123332 22444668899999999999887
Q ss_pred hhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhcc--C
Q 010254 78 GKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI--E 155 (514)
Q Consensus 78 ~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~ 155 (514)
.....+++.+|++++|+|++++...+... +...+.+. ++|+++|+||+|+.... .+...+.+...++.. .
T Consensus 90 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~--~~~~~~~~--~~p~ivviNK~D~~~~~----~~~~~~~i~~~l~~~~~~ 161 (689)
T TIGR00484 90 VEVERSLRVLDGAVAVLDAVGGVQPQSET--VWRQANRY--EVPRIAFVNKMDKTGAN----FLRVVNQIKQRLGANAVP 161 (689)
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCChhHHH--HHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCCcee
Confidence 77888999999999999998876655433 55556655 79999999999998641 233445555555421 2
Q ss_pred cEEEcCccccc
Q 010254 156 TCIECSALKQI 166 (514)
Q Consensus 156 ~~i~~Sa~~~~ 166 (514)
..+++||..+.
T Consensus 162 ~~ipis~~~~~ 172 (689)
T TIGR00484 162 IQLPIGAEDNF 172 (689)
T ss_pred EEeccccCCCc
Confidence 36888988774
No 433
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.48 E-value=4.5e-13 Score=127.28 Aligned_cols=115 Identities=23% Similarity=0.306 Sum_probs=74.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC------CCCCcc-c---cccee--CCeeEEEEEeCCCCccchhh----
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPP------VLPPTR-L---PEDFY--PDRVPITIIDTPSSVEDRGK---- 79 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~------~~~~tt-~---~~~~~--~~~~~~~l~Dt~G~~~~~~~---- 79 (514)
.++|+++|++|+|||||+|+|++..+...... ....|+ + ...+. ....++.+|||||+.+....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999999886443211 011221 1 11222 22468999999997654221
Q ss_pred ----------HH------------Hhhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc
Q 010254 80 ----------LG------------EELR--RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 80 ----------~~------------~~~~--~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 134 (514)
.. ..+. ++|+++++++.+. ..+...+..++..+.. ++|+++|+||+|+...
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~~---~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLSK---RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHhc---cCCEEEEEECCCcCCH
Confidence 00 1111 5788888888664 2233332236666654 7899999999999764
No 434
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=6.4e-14 Score=118.45 Aligned_cols=147 Identities=17% Similarity=0.330 Sum_probs=114.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccccee--CCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFY--PDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
-.++++++|+.|.||+|++++.+.++|...+..+.+-...+..+. .+.+++..|||+|++.+......++-++.+.++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 479999999999999999999999999777666544444343333 224899999999999998888888889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccc
Q 010254 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~ 168 (514)
++|++.+.++.++.. |...+.+.+.++|++++|||.|..... .....+. +...- ++ .++++||+++-|.
T Consensus 89 mFdVtsr~t~~n~~r-whrd~~rv~~NiPiv~cGNKvDi~~r~---~k~k~v~-~~rkk-nl-~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPR-WHRDLVRVRENIPIVLCGNKVDIKARK---VKAKPVS-FHRKK-NL-QYYEISAKSNYNF 157 (216)
T ss_pred EeeeeehhhhhcchH-HHHHHHHHhcCCCeeeeccceeccccc---cccccce-eeecc-cc-eeEEeeccccccc
Confidence 999999999999987 988888888899999999999987651 0001111 11111 12 7899999999844
No 435
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.47 E-value=5.2e-13 Score=134.58 Aligned_cols=125 Identities=22% Similarity=0.136 Sum_probs=83.7
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChh----HHHhhh-cCcccccc
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEE----AVAKLL-SNKDSLAA 443 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~----~~~~~~-~~~~~~~~ 443 (514)
..+|++||.||||||||+|+|.+.+......+.+|.......+... + ..+.++|++|.. ....+. ....++++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~-~-~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAG-D-TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEEC-C-eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 3579999999999999999999877654443444545555556554 3 467789999942 111110 11246788
Q ss_pred CcEEEEEEeCCCh----hhHHHHHHHHHHHHhcCCC--------CCCCCcEEEEEeCCCCcccc
Q 010254 444 CDIAVFVHDSSDE----SSWKRATELLVEVASYGED--------TGFEVPCLIVAAKDDLDSFA 495 (514)
Q Consensus 444 ~d~vilv~D~~~~----~s~~~~~~~~~~~~~~~~~--------~~~~~p~ilv~nK~Dl~~~~ 495 (514)
||++|+|+|+++. +.++.+..+..++..+... ...++|++||+||+|+...+
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~ 300 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR 300 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH
Confidence 9999999999852 3566666665555444310 11268999999999997543
No 436
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=6.5e-13 Score=129.90 Aligned_cols=159 Identities=19% Similarity=0.187 Sum_probs=117.8
Q ss_pred CCCCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-----cccceeCCeeEEEEEeCCCCccchhhHHH
Q 010254 8 NSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-----LPEDFYPDRVPITIIDTPSSVEDRGKLGE 82 (514)
Q Consensus 8 ~~~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-----~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 82 (514)
.-....++..-|.|+|.-..|||||+.+|.+...+.. ..++.| ..+.+ ..+.++++.||||+..|..++..
T Consensus 145 ~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~---E~GGITQhIGAF~V~~-p~G~~iTFLDTPGHaAF~aMRaR 220 (683)
T KOG1145|consen 145 DPKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAG---EAGGITQHIGAFTVTL-PSGKSITFLDTPGHAAFSAMRAR 220 (683)
T ss_pred CHhhcCCCCCeEEEeecccCChhhHHHHHhhCceehh---hcCCccceeceEEEec-CCCCEEEEecCCcHHHHHHHHhc
Confidence 3334446778899999999999999999998875332 234444 11122 25789999999999999999888
Q ss_pred hhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHH------HHHHhccCc
Q 010254 83 ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPI------MQQFREIET 156 (514)
Q Consensus 83 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~ 156 (514)
-..-+|++++|+.++++-..+..+ -+...+.. +.|+|+++||+|....+ .+....+| .+++++.-+
T Consensus 221 GA~vtDIvVLVVAadDGVmpQT~E--aIkhAk~A--~VpiVvAinKiDkp~a~----pekv~~eL~~~gi~~E~~GGdVQ 292 (683)
T KOG1145|consen 221 GANVTDIVVLVVAADDGVMPQTLE--AIKHAKSA--NVPIVVAINKIDKPGAN----PEKVKRELLSQGIVVEDLGGDVQ 292 (683)
T ss_pred cCccccEEEEEEEccCCccHhHHH--HHHHHHhc--CCCEEEEEeccCCCCCC----HHHHHHHHHHcCccHHHcCCcee
Confidence 899999999999999876655554 44445554 89999999999987652 22222333 335555558
Q ss_pred EEEcCccccccceecCCCCChhhHHHHHHHHHHH
Q 010254 157 CIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 157 ~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~ 190 (514)
++++||++|. |++.|.+.+.-.
T Consensus 293 vipiSAl~g~------------nl~~L~eaill~ 314 (683)
T KOG1145|consen 293 VIPISALTGE------------NLDLLEEAILLL 314 (683)
T ss_pred EEEeecccCC------------ChHHHHHHHHHH
Confidence 9999999999 889888887644
No 437
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.46 E-value=3e-12 Score=118.27 Aligned_cols=143 Identities=17% Similarity=0.174 Sum_probs=92.9
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
....+..|+|+|.+|+|||||+|.|.+... ........++ +. .....+..+.++||||.. ......++.+|+++
T Consensus 35 ~~~~~~~i~ivG~~~~GKstl~~~l~~~~~-~~~~~~~~g~-i~-i~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVl 108 (225)
T cd01882 35 EEPPPLVVAVVGPPGVGKTTLIKSLVKNYT-KQNISDIKGP-IT-VVTGKKRRLTFIECPNDI---NAMIDIAKVADLVL 108 (225)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcc-cCcccccccc-EE-EEecCCceEEEEeCCchH---HHHHHHHHhcCEEE
Confidence 356678899999999999999999987632 2222222222 11 122357789999999853 33445678999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcE-EEEEecccCcccccchhHhhhhHHH----HHHHhccCcEEEcCccccc
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLEVKVPV-IVVGCKLDLRDENQQVSLEQVMMPI----MQQFREIETCIECSALKQI 166 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pv-ilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~Sa~~~~ 166 (514)
+|+|++.+...... .++..+... +.|. ++|+||+|+.+.. ...++....+ ...+....+++.+||++..
T Consensus 109 lviDa~~~~~~~~~--~i~~~l~~~--g~p~vi~VvnK~D~~~~~--~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 109 LLIDASFGFEMETF--EFLNILQVH--GFPRVMGVLTHLDLFKKN--KTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEEecCcCCCHHHH--HHHHHHHHc--CCCeEEEEEeccccCCcH--HHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 99998865544333 266666655 6775 5599999987531 1112222223 2223233589999999986
No 438
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=3.7e-13 Score=132.95 Aligned_cols=157 Identities=17% Similarity=0.129 Sum_probs=113.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cc---cceeC-CeeEEEEEeCCCCccchhhHHHhhhccC
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LP---EDFYP-DRVPITIIDTPSSVEDRGKLGEELRRAD 88 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~---~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~ad 88 (514)
+..-|+|+|+-..|||||+.++.+.+... ...++.| +. +..+. ....++++||||++.|..++..-.+-+|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~---~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtD 80 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAA---GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTD 80 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcccc---ccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCcccc
Confidence 34669999999999999999998887433 2334444 11 11111 3468999999999999998888889999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccccc-chhHh-hhhHHHHHHHhccCcEEEcCccccc
Q 010254 89 AVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ-QVSLE-QVMMPIMQQFREIETCIECSALKQI 166 (514)
Q Consensus 89 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~-~~~~~-~~~~~~~~~~~~~~~~i~~Sa~~~~ 166 (514)
++++|++++++-..+.++ =+..++.. +.|+++++||+|..+.+. .+..+ +...-..+.|+..-.++++||++|.
T Consensus 81 IaILVVa~dDGv~pQTiE--AI~hak~a--~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 81 IAILVVAADDGVMPQTIE--AINHAKAA--GVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEEEEccCCcchhHHH--HHHHHHHC--CCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 999999999976666655 45556665 899999999999986521 11111 1111123344444478999999999
Q ss_pred cceecCCCCChhhHHHHHHHHHHH
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~~ 190 (514)
|+++|++.|.-.
T Consensus 157 ------------Gi~eLL~~ill~ 168 (509)
T COG0532 157 ------------GIDELLELILLL 168 (509)
T ss_pred ------------CHHHHHHHHHHH
Confidence 999999887643
No 439
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.46 E-value=7.3e-13 Score=116.78 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=83.8
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhh------cCccccc
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLL------SNKDSLA 442 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~------~~~~~~~ 442 (514)
..+|+++|++|+|||||+|++++.+.......+.++.......... +...+.+|||+|........ .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEc-CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999987655444333443433333333 45667789999953221110 1134578
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHH-HHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHc
Q 010254 443 ACDIAVFVHDSSDESSWKRATELL-VEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFL 508 (514)
Q Consensus 443 ~~d~vilv~D~~~~~s~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~ 508 (514)
.+|++++|+|+++. +.....++ ..+... +.|+++|+||+|+.... ........++...
T Consensus 82 ~~d~i~~v~d~~~~--~~~~~~~~~~~~~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~ 141 (168)
T cd04163 82 DVDLVLFVVDASEP--IGEGDEFILELLKKS------KTPVILVLNKIDLVKDKEDLLPLLEKLKELG 141 (168)
T ss_pred hCCEEEEEEECCCc--cCchHHHHHHHHHHh------CCCEEEEEEchhccccHHHHHHHHHHHHhcc
Confidence 89999999999987 33333333 333332 58999999999998432 2333344444443
No 440
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.45 E-value=1.3e-12 Score=134.68 Aligned_cols=116 Identities=12% Similarity=0.090 Sum_probs=81.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCC-C-----------------Cccc---ccceeCCeeEEEEEeCC
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVL-P-----------------PTRL---PEDFYPDRVPITIIDTP 71 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~-~~~~~-~-----------------~tt~---~~~~~~~~~~~~l~Dt~ 71 (514)
.+..+|+|+|.+|+|||||+++|+...-... ..... . +.++ ...+..+++.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999864221111 10000 0 1111 12345678999999999
Q ss_pred CCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcc
Q 010254 72 SSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD 133 (514)
Q Consensus 72 G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~ 133 (514)
|+.++......++..+|++|+|+|+++... .....+....+.. ++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~--~~t~~l~~~~~~~--~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE--TRTRKLMEVTRLR--DTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC--HHHHHHHHHHHhc--CCCEEEEEECccccC
Confidence 998887777888999999999999887532 2222355555554 799999999999854
No 441
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.7e-13 Score=132.81 Aligned_cols=126 Identities=19% Similarity=0.110 Sum_probs=91.9
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhH-------HHhhhcCccc
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA-------VAKLLSNKDS 440 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~-------~~~~~~~~~~ 440 (514)
..++|+|+|+||||||||+|.|...++.++++.++|+++.+...... .+..+.+.||||..+ ...+.+++..
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~-~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTV-NGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeec-CCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 34899999999999999999999999999999899999998876555 455556679999544 1223355678
Q ss_pred cccCcEEEEEEeC--CChhhHHHHHHHHHHHHhcCC---CCCCCCcEEEEEeCCCCccc
Q 010254 441 LAACDIAVFVHDS--SDESSWKRATELLVEVASYGE---DTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 441 ~~~~d~vilv~D~--~~~~s~~~~~~~~~~~~~~~~---~~~~~~p~ilv~nK~Dl~~~ 494 (514)
++.+|++++|+|+ ++-++-..+.+.+........ ....+.|++++.||+|+..+
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 8999999999999 444443444444443322110 01125889999999998764
No 442
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.45 E-value=6.8e-13 Score=106.39 Aligned_cols=132 Identities=24% Similarity=0.295 Sum_probs=106.0
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+|+.++|-.|+|||||++.|.+.+..... ||.| |.++.+... +....-+||-.|+...+..| ..+|.+.|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hlt-pT~G--Fn~k~v~~~-g~f~LnvwDiGGqr~IRpyW--sNYyenvd~ 88 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLT-PTNG--FNTKKVEYD-GTFHLNVWDIGGQRGIRPYW--SNYYENVDG 88 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhcc-ccCC--cceEEEeec-CcEEEEEEecCCccccchhh--hhhhhccce
Confidence 45699999999999999999999998765444 4555 888889888 88888899999999888888 589999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCC
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM 510 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 510 (514)
+|+|+|.+|...|+++...+.++.....- ..+|+.+-+||.|+.. ....++.+.++++
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELleeeKl--~~vpvlIfankQdllt----aa~~eeia~klnl 146 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEEEKL--AEVPVLIFANKQDLLT----AAKVEEIALKLNL 146 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhhhhh--hccceeehhhhhHHHh----hcchHHHHHhcch
Confidence 99999999999999988777776554322 2799999999999876 3334445555544
No 443
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.44 E-value=1.7e-12 Score=124.35 Aligned_cols=82 Identities=16% Similarity=0.161 Sum_probs=59.8
Q ss_pred hhhccCEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcC
Q 010254 83 ELRRADAVVLTYACDRPE-TLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECS 161 (514)
Q Consensus 83 ~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 161 (514)
.+.++|++++|+|++++. ++..++. |+..+... ++|+++|+||+||.+. .. ..........++ .+++.+|
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr-~L~~~~~~--~ip~iIVlNK~DL~~~---~~-~~~~~~~~~~~g--~~v~~vS 145 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDR-YLVAAEAA--GIEPVIVLTKADLLDD---EE-EELELVEALALG--YPVLAVS 145 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHH-HHHHHHHc--CCCEEEEEEHHHCCCh---HH-HHHHHHHHHhCC--CeEEEEE
Confidence 488999999999999887 7777776 77777765 8999999999999764 11 111112222332 2789999
Q ss_pred ccccccceecCCCCChhhHHHHHH
Q 010254 162 ALKQIQVKCFNSPLQPSEIVGVKR 185 (514)
Q Consensus 162 a~~~~~~~~f~~~l~~~~i~~L~~ 185 (514)
|+++. |+++|..
T Consensus 146 A~~g~------------gi~~L~~ 157 (287)
T cd01854 146 AKTGE------------GLDELRE 157 (287)
T ss_pred CCCCc------------cHHHHHh
Confidence 99998 8777654
No 444
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.43 E-value=7.2e-13 Score=115.68 Aligned_cols=114 Identities=19% Similarity=0.223 Sum_probs=78.6
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCC-CCCCccEEEEEEECCCCcEEEEEEecCChhHHHh------hhcCccccc
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-PTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK------LLSNKDSLA 442 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~------~~~~~~~~~ 442 (514)
++|+++|++|+|||||++++.+........ ++.+.......+... ...+.+|||+|...+.. .......+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999987543332 333333333334333 34567899999533221 111234667
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 443 ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 443 ~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
.+|++++|+|++++.+......+.. . .+.|+++|+||+|+...
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~----~-----~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL----P-----ADKPIIVVLNKSDLLPD 122 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh----h-----cCCCEEEEEEchhcCCc
Confidence 9999999999998777666554432 1 26999999999998763
No 445
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.43 E-value=1.5e-12 Score=128.62 Aligned_cols=97 Identities=21% Similarity=0.135 Sum_probs=63.3
Q ss_pred ccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccc-hhHhhhhHHHHHHHh
Q 010254 74 VEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQ-VSLEQVMMPIMQQFR 152 (514)
Q Consensus 74 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~ 152 (514)
+++......+...++++++|+|+.+... .|.+.+.+...++|+++|+||+|+.+.... ....+.+..+.+.++
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~------s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g 124 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEG------SLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG 124 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCC------CccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC
Confidence 3555666777889999999999876542 155555554347899999999999754111 111112222333333
Q ss_pred c-cCcEEEcCccccccceecCCCCChhhHHHHHHHHH
Q 010254 153 E-IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQ 188 (514)
Q Consensus 153 ~-~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~ 188 (514)
. ...++.+||+++. |+++|.+.+.
T Consensus 125 ~~~~~i~~vSAk~g~------------gv~eL~~~l~ 149 (360)
T TIGR03597 125 LKPVDIILVSAKKGN------------GIDELLDKIK 149 (360)
T ss_pred CCcCcEEEecCCCCC------------CHHHHHHHHH
Confidence 1 1258999999999 8888877664
No 446
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.43 E-value=1.1e-12 Score=132.89 Aligned_cols=152 Identities=18% Similarity=0.119 Sum_probs=98.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCC--CCCC--------------------------CCCCCCCcccc---cceeCC
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADT--FPAN--------------------------VPPVLPPTRLP---EDFYPD 61 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~--~~~~--------------------------~~~~~~~tt~~---~~~~~~ 61 (514)
.+..++|+++|..++|||||+.+|+..- .... ......+.|+. ..+..+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 3567999999999999999999998621 0000 00011122322 133466
Q ss_pred eeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCccc-------HHHHHHHHHHHHHhcCCCCc-EEEEEecccCcc
Q 010254 62 RVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPET-------LDELSTFWLPELRRLEVKVP-VIVVGCKLDLRD 133 (514)
Q Consensus 62 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s-------~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~ 133 (514)
+..+.|+||||++++...+...+..+|++++|+|++.+.. .+. .+ .+..+... ++| +|+++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT-~e-h~~~~~~~--gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQT-RE-HALLAFTL--GVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccH-HH-HHHHHHHc--CCCeEEEEEEcccccc
Confidence 7899999999999998888888999999999999986531 111 11 23344444 666 789999999532
Q ss_pred ----cccchhHhhhhHHHHHHHhc---cCcEEEcCccccccc
Q 010254 134 ----ENQQVSLEQVMMPIMQQFRE---IETCIECSALKQIQV 168 (514)
Q Consensus 134 ----~~~~~~~~~~~~~~~~~~~~---~~~~i~~Sa~~~~~~ 168 (514)
..+.....+.+..+...++. ..+++++||.+|.|+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni 201 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNM 201 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCc
Confidence 11222222333333333332 137899999999955
No 447
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.43 E-value=3.8e-13 Score=108.60 Aligned_cols=116 Identities=17% Similarity=0.236 Sum_probs=95.4
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+.+.++|-.++|||||+|....+.+...--|+.|. ....+ ..|.....+||..|+.+|.+++ ..++++++++++
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGf--nmrk~--tkgnvtiklwD~gGq~rfrsmW--erycR~v~aivY 94 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGF--NMRKV--TKGNVTIKLWDLGGQPRFRSMW--ERYCRGVSAIVY 94 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhhhcccccc--eeEEe--ccCceEEEEEecCCCccHHHHH--HHHhhcCcEEEE
Confidence 67999999999999999999988877655577674 33333 3366777899999999999999 689999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
|+|+.+++.++..+.-+..+.....-. ++|+++.|||.|+..
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~--gip~LVLGnK~d~~~ 136 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLT--GIPLLVLGNKIDLPG 136 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhc--CCcEEEecccccCcc
Confidence 999999988887777777766544332 799999999999876
No 448
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.43 E-value=1.6e-12 Score=117.41 Aligned_cols=114 Identities=17% Similarity=0.111 Sum_probs=78.9
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCC--------------CccEEEEEEECCCCcEEEEEEecCChhHHHhhhc
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTT--------------DERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLS 436 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~ 436 (514)
+|+++|.+|+|||||+|+|++........... +............+...+.+|||+|...+...+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~- 79 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEV- 79 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHH-
Confidence 48999999999999999999887765442211 111121122222234567789999988776655
Q ss_pred CccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 437 NKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 437 ~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
...++.+|++++|+|+++..+... ..++..+.. . +.|+++|+||+|+..
T Consensus 80 -~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~-~-----~~~i~iv~nK~D~~~ 128 (189)
T cd00881 80 -IRGLSVSDGAILVVDANEGVQPQT-REHLRIARE-G-----GLPIIVAINKIDRVG 128 (189)
T ss_pred -HHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH-C-----CCCeEEEEECCCCcc
Confidence 467789999999999998754432 233333333 2 699999999999976
No 449
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.42 E-value=1.8e-12 Score=117.84 Aligned_cols=117 Identities=21% Similarity=0.141 Sum_probs=76.5
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCCh----------hHHHhhh
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE----------EAVAKLL 435 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~----------~~~~~~~ 435 (514)
.+..++|+++|.+|||||||+|+|++.++...+.++.+.+..+...... ..+.+|||+|. +.+..+.
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN---DKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC---CeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 3456899999999999999999999987544444554544444444332 45678999993 3443333
Q ss_pred cCcccc---ccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 436 SNKDSL---AACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 436 ~~~~~~---~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
..++ ..++++++|+|++++.+. ...++....... +.|+++++||+|+...
T Consensus 98 --~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~i~~~l~~~-----~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 98 --EEYLRTRENLKGVVLLIDSRHPLKE--LDLQMIEWLKEY-----GIPVLIVLTKADKLKK 150 (196)
T ss_pred --HHHHHhCccceEEEEEEecCCCCCH--HHHHHHHHHHHc-----CCcEEEEEECcccCCH
Confidence 2223 345789999998876333 222222222222 6899999999999754
No 450
>PRK00007 elongation factor G; Reviewed
Probab=99.42 E-value=1.7e-12 Score=139.29 Aligned_cols=143 Identities=17% Similarity=0.114 Sum_probs=100.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCC--CC------------CCCCccc---ccceeCCeeEEEEEeCCCCccc
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFP-ANV--PP------------VLPPTRL---PEDFYPDRVPITIIDTPSSVED 76 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~-~~~--~~------------~~~~tt~---~~~~~~~~~~~~l~Dt~G~~~~ 76 (514)
+-.+|+|+|++|+|||||+|+|+...-. ... .. ...++|+ ...+.+.+..+.++||||+.++
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 3459999999999999999999742100 111 11 1223332 2234456889999999999887
Q ss_pred hhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhcc--
Q 010254 77 RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI-- 154 (514)
Q Consensus 77 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-- 154 (514)
.......++.+|++++|+|+..+...+... .+..+.+. ++|+|+++||+|+.... .......+.+.++..
T Consensus 89 ~~ev~~al~~~D~~vlVvda~~g~~~qt~~--~~~~~~~~--~~p~iv~vNK~D~~~~~----~~~~~~~i~~~l~~~~~ 160 (693)
T PRK00007 89 TIEVERSLRVLDGAVAVFDAVGGVEPQSET--VWRQADKY--KVPRIAFVNKMDRTGAD----FYRVVEQIKDRLGANPV 160 (693)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCcchhhHH--HHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCCee
Confidence 777788899999999999988775555433 55666666 79999999999998641 333445566666542
Q ss_pred CcEEEcCcccc
Q 010254 155 ETCIECSALKQ 165 (514)
Q Consensus 155 ~~~i~~Sa~~~ 165 (514)
...+++||..+
T Consensus 161 ~~~ipisa~~~ 171 (693)
T PRK00007 161 PIQLPIGAEDD 171 (693)
T ss_pred eEEecCccCCc
Confidence 25688999887
No 451
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.42 E-value=5.2e-13 Score=116.62 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=73.8
Q ss_pred EEeCCCCCChHHHHHHhhCCCCCCCC-CCCCCccEEEEEEECCCCcEEEEEEecCChhHHHh-----hh-cCccccccCc
Q 010254 373 FVFGPKKAGKSVLLNSFLGRPFSDNY-TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK-----LL-SNKDSLAACD 445 (514)
Q Consensus 373 ~iiG~~~vGKSsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~-----~~-~~~~~~~~~d 445 (514)
+++|.+|||||||+|+|++....... .++.+.+......... ...+.+|||+|...+.. +. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWG--GREFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEEC--CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999987633222 1333333333344433 35577999999765432 11 1134578899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 495 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 495 (514)
++++|+|+.+..+... .++..+.... +.|+++|+||+|+....
T Consensus 79 ~ii~v~d~~~~~~~~~--~~~~~~~~~~-----~~piiiv~nK~D~~~~~ 121 (157)
T cd01894 79 VILFVVDGREGLTPAD--EEIAKYLRKS-----KKPVILVVNKVDNIKEE 121 (157)
T ss_pred EEEEEEeccccCCccH--HHHHHHHHhc-----CCCEEEEEECcccCChH
Confidence 9999999987644332 2233322222 69999999999997743
No 452
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=6.4e-13 Score=106.95 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=114.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
...+|.++|--|+||+|++-++.-.+.....++. +. -...+..++.++.+||..|+..-...++.|+.+.|++|+|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPti--gf-nve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVV 93 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTI--GF-NVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVV 93 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCC--Cc-CccccccccccceeeEccCcccccHHHHHHhcccceEEEEE
Confidence 6789999999999999999988776644433321 11 11223347889999999999988899999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccc-c-chhHhhhhHHHHHHHhccCcEEEcCccccccceec
Q 010254 95 ACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDEN-Q-QVSLEQVMMPIMQQFREIETCIECSALKQIQVKCF 171 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f 171 (514)
|.+++....-....+...++.-. .+..+++++||.|..... + .+...-.+..+.++. ..+|+.||.+|+
T Consensus 94 Dssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~---~~Iv~tSA~kg~----- 165 (182)
T KOG0072|consen 94 DSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRI---WQIVKTSAVKGE----- 165 (182)
T ss_pred eccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhhe---eEEEeecccccc-----
Confidence 99887655444444666655432 367899999999976541 0 011111223333332 278999999999
Q ss_pred CCCCChhhHHHHHHHHHHHhc
Q 010254 172 NSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 172 ~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++...+++.+.+.
T Consensus 166 -------Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 166 -------GLDPAMDWLQRPLK 179 (182)
T ss_pred -------CCcHHHHHHHHHHh
Confidence 99999999987664
No 453
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=2.3e-12 Score=126.16 Aligned_cols=164 Identities=15% Similarity=0.159 Sum_probs=118.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC------------CCCCCCCccccc---ce---eCCeeEEEEEeCCCCccc
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPAN------------VPPVLPPTRLPE---DF---YPDRVPITIIDTPSSVED 76 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~------------~~~~~~~tt~~~---~~---~~~~~~~~l~Dt~G~~~~ 76 (514)
+--+++||-.-..|||||..+|+..--... .+....|.|+.. .+ +...+.++++||||+-+|
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 335799999999999999999985321000 111222333221 11 134588999999999999
Q ss_pred hhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc-cC
Q 010254 77 RGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE-IE 155 (514)
Q Consensus 77 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~ 155 (514)
.......+.-+|++|+|+|+..+...+.+.. +...+.. +..+|.|+||+|+... +....+ .++.+-|.. ..
T Consensus 139 s~EVsRslaac~G~lLvVDA~qGvqAQT~an-f~lAfe~---~L~iIpVlNKIDlp~a-dpe~V~---~q~~~lF~~~~~ 210 (650)
T KOG0462|consen 139 SGEVSRSLAACDGALLVVDASQGVQAQTVAN-FYLAFEA---GLAIIPVLNKIDLPSA-DPERVE---NQLFELFDIPPA 210 (650)
T ss_pred cceehehhhhcCceEEEEEcCcCchHHHHHH-HHHHHHc---CCeEEEeeeccCCCCC-CHHHHH---HHHHHHhcCCcc
Confidence 9888889999999999999998877777665 3333333 7899999999999886 333333 334444432 23
Q ss_pred cEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCcccCC
Q 010254 156 TCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREGVNER 198 (514)
Q Consensus 156 ~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~~~~ 198 (514)
+++.+|||+|. ++++++++|.+.+|......
T Consensus 211 ~~i~vSAK~G~------------~v~~lL~AII~rVPpP~~~~ 241 (650)
T KOG0462|consen 211 EVIYVSAKTGL------------NVEELLEAIIRRVPPPKGIR 241 (650)
T ss_pred ceEEEEeccCc------------cHHHHHHHHHhhCCCCCCCC
Confidence 89999999999 99999999999998765443
No 454
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=3.4e-12 Score=102.34 Aligned_cols=117 Identities=22% Similarity=0.240 Sum_probs=96.3
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.++|+++|-.++||||++.+|.-+....+. ||.| |.++++.+. ..++.+||..|+...+.+| ++++.+..++|
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~i-pTvG--FnvetVtyk--N~kfNvwdvGGqd~iRplW--rhYy~gtqglI 89 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVG--FNVETVTYK--NVKFNVWDVGGQDKIRPLW--RHYYTGTQGLI 89 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCcccc-cccc--eeEEEEEee--eeEEeeeeccCchhhhHHH--HhhccCCceEE
Confidence 488999999999999999999877654333 5555 888888774 4667789999999999999 68999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
||.|+.+++..++++.-+..+.....- ...|++|.+||.|+...
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em--~~~~~LvlANkQDlp~A 133 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREM--RDAIILILANKQDLPDA 133 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhh--hcceEEEEecCcccccc
Confidence 999999998888888777666554322 27999999999999874
No 455
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.41 E-value=1.2e-12 Score=118.48 Aligned_cols=115 Identities=16% Similarity=0.153 Sum_probs=71.4
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCC----CCCC---CCCCCCcc--EEEEEEEC----------CCCcEEEEEEecCChhH
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRP----FSDN---YTPTTDER--YAVNVVDQ----------PGGTKKTVVLREIPEEA 430 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~----~~~~---~~~~~~~~--~~~~~~~~----------~~~~~~~~i~dt~g~~~ 430 (514)
++|+++|++|+|||||+++|++.. +... ..+..+.. +....+.. ......+.+|||+|+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 479999999999999999999731 1111 11122222 22222221 11245667899999866
Q ss_pred HHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 431 VAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 431 ~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
+.... ....+.+|++++|+|+++..+.+..+.+. +.... +.|+++|+||+|+..
T Consensus 81 ~~~~~--~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~-----~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 81 LIRTI--IGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL-----CKKLIVVLNKIDLIP 134 (192)
T ss_pred HHHHH--HHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc-----CCCEEEEEECcccCC
Confidence 53322 24456789999999999864433333332 12222 579999999999874
No 456
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.41 E-value=1.7e-12 Score=131.56 Aligned_cols=152 Identities=15% Similarity=0.100 Sum_probs=99.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCC--CC-----------C---------------CCCCCCCccccc---ceeCC
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTF--PA-----------N---------------VPPVLPPTRLPE---DFYPD 61 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~--~~-----------~---------------~~~~~~~tt~~~---~~~~~ 61 (514)
.+..++|+++|..++|||||+-+|+..-- .. . ......+.|+.. .+..+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 45679999999999999999999974210 00 0 000111222222 23456
Q ss_pred eeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcccHH-------HHHHHHHHHHHhcCCCC-cEEEEEecccCcc
Q 010254 62 RVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLD-------ELSTFWLPELRRLEVKV-PVIVVGCKLDLRD 133 (514)
Q Consensus 62 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~-------~~~~~~~~~l~~~~~~~-pvilv~NK~Dl~~ 133 (514)
+..++++||||++++...+...+..+|++|+|+|+++.. ++ ...+ .+..+... ++ ++|+++||+|+.+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~e-h~~~~~~~--gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTRE-HALLAFTL--GVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHH-HHHHHHHc--CCCcEEEEEEcccCCc
Confidence 789999999999999988889999999999999998631 21 2222 22233334 66 4788999999863
Q ss_pred cc----cchhHhhhhHHHHHHHhc---cCcEEEcCccccccc
Q 010254 134 EN----QQVSLEQVMMPIMQQFRE---IETCIECSALKQIQV 168 (514)
Q Consensus 134 ~~----~~~~~~~~~~~~~~~~~~---~~~~i~~Sa~~~~~~ 168 (514)
.. +.....+.+..+.++++. ..+++++||.+|.|+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni 201 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNM 201 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccc
Confidence 11 112222334444444442 127999999999966
No 457
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.41 E-value=4.4e-12 Score=115.89 Aligned_cols=149 Identities=16% Similarity=0.268 Sum_probs=91.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc-ce-eCCeeEEEEEeCCCCccchh-----hHHHhhhccCEE
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE-DF-YPDRVPITIIDTPSSVEDRG-----KLGEELRRADAV 90 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~-~~-~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~~ad~i 90 (514)
||+++|+.++||||+.+.+.+.-.+.......+++.+.. .+ ..+...+.|||.||+..+.+ .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 799999999999999999988753232222222222222 22 15578999999999976544 346678999999
Q ss_pred EEEEeCCCcccHHHHHH--HHHHHHHhcCCCCcEEEEEecccCcccc-cchhHhhhhHHHHHHHhcc----CcEEEcCcc
Q 010254 91 VLTYACDRPETLDELST--FWLPELRRLEVKVPVIVVGCKLDLRDEN-QQVSLEQVMMPIMQQFREI----ETCIECSAL 163 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~--~~~~~l~~~~~~~pvilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~----~~~i~~Sa~ 163 (514)
|+|+|+...+-.+++.. ..+..+.+.+|+..+.+.++|+|+..+. +....++..+.+.+..... -.++.+|..
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~ 160 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIW 160 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TT
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCc
Confidence 99999985443333321 2445556667899999999999997653 3333433444444444321 267888888
Q ss_pred ccc
Q 010254 164 KQI 166 (514)
Q Consensus 164 ~~~ 166 (514)
...
T Consensus 161 D~S 163 (232)
T PF04670_consen 161 DES 163 (232)
T ss_dssp STH
T ss_pred CcH
Confidence 764
No 458
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.41 E-value=3.8e-12 Score=132.47 Aligned_cols=116 Identities=17% Similarity=0.169 Sum_probs=84.7
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
...+|+++|.+++|||||+++|.+.++...+.+..|.+.....+.+. +...+.+|||+|++.|..++ ...+..+|++
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~-~~~~i~~iDTPGhe~F~~~r--~rga~~aDia 162 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENE-DGKMITFLDTPGHEAFTSMR--ARGAKVTDIV 162 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEEC-CCcEEEEEECCCCcchhhHH--HhhhccCCEE
Confidence 34689999999999999999999988776655555555554555554 33367789999999998776 4678899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
++|+|+++...-+....+ ...... ++|+++++||+|+..
T Consensus 163 ILVVda~dgv~~qT~e~i-~~~~~~------~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 163 VLVVAADDGVMPQTIEAI-SHAKAA------NVPIIVAINKIDKPE 201 (587)
T ss_pred EEEEECCCCCCHhHHHHH-HHHHHc------CCCEEEEEECccccc
Confidence 999999874222222222 222221 699999999999864
No 459
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.40 E-value=5.4e-12 Score=109.86 Aligned_cols=131 Identities=17% Similarity=0.136 Sum_probs=87.3
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCC-CCCCCCCCCccEEEEEEECCCCcEEEEEEecCC----------hhHHHhhh
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPF-SDNYTPTTDERYAVNVVDQPGGTKKTVVLREIP----------EEAVAKLL 435 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g----------~~~~~~~~ 435 (514)
....-|+++|++|||||||||+|++... ..++ .++|.+-.+....+.++ ..++|.+| .+.+..+.
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtS-ktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTS-KTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecC-CCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHH
Confidence 3456799999999999999999999764 4444 55566566677777622 55679998 23333333
Q ss_pred cCccccc---cCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCC
Q 010254 436 SNKDSLA---ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM 510 (514)
Q Consensus 436 ~~~~~~~---~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 510 (514)
.++++ .-.++++++|+-.. ....+..+.++.... ++|+++|+||+|..............++.+.+
T Consensus 98 --~~YL~~R~~L~~vvlliD~r~~--~~~~D~em~~~l~~~-----~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~ 166 (200)
T COG0218 98 --EEYLEKRANLKGVVLLIDARHP--PKDLDREMIEFLLEL-----GIPVIVVLTKADKLKKSERNKQLNKVAEELKK 166 (200)
T ss_pred --HHHHhhchhheEEEEEEECCCC--CcHHHHHHHHHHHHc-----CCCeEEEEEccccCChhHHHHHHHHHHHHhcC
Confidence 12232 35789999999876 555555555544443 79999999999988753333334444544443
No 460
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.39 E-value=7.9e-12 Score=109.87 Aligned_cols=56 Identities=20% Similarity=0.131 Sum_probs=40.0
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCC
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIP 427 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g 427 (514)
..++++++|.||||||||+|+|.+.....+...+++++ ....+... . .+.++||+|
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~-~~~~~~~~-~--~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTK-SMQEVHLD-K--KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEc-ceEEEEeC-C--CEEEEECcC
Confidence 34789999999999999999999988766654444333 33444443 2 355789998
No 461
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.39 E-value=4e-12 Score=133.11 Aligned_cols=132 Identities=15% Similarity=0.152 Sum_probs=90.8
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCC-------CCCCCCC------CCCccEEEEEEEC-----CCCcEEEEEEecCChhH
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRP-------FSDNYTP------TTDERYAVNVVDQ-----PGGTKKTVVLREIPEEA 430 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~dt~g~~~ 430 (514)
..+++++|.+++|||||+++|+... +...+.. ..+.++....+.+ ++....+.+|||+|++.
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3579999999999999999998653 1222211 1233343333222 22335667999999999
Q ss_pred HHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCC
Q 010254 431 VAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM 510 (514)
Q Consensus 431 ~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 510 (514)
|...+ ..+++.||++|+|+|+++..+++....|...+. . ++|+++|+||+|+.... ......++++.+++
T Consensus 83 F~~~v--~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-~------~ipiIiViNKiDl~~~~-~~~~~~el~~~lg~ 152 (595)
T TIGR01393 83 FSYEV--SRSLAACEGALLLVDAAQGIEAQTLANVYLALE-N------DLEIIPVINKIDLPSAD-PERVKKEIEEVIGL 152 (595)
T ss_pred HHHHH--HHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-c------CCCEEEEEECcCCCccC-HHHHHHHHHHHhCC
Confidence 98766 578899999999999999877777666655442 1 68999999999986532 12234556665655
No 462
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.39 E-value=2.4e-12 Score=137.89 Aligned_cols=133 Identities=13% Similarity=0.088 Sum_probs=89.7
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhc--------Cccc-
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLS--------NKDS- 440 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~--------~~~~- 440 (514)
++|+++|.||||||||+|+|++.+......+ +++...+...+..+...+.++||+|...+..... ...+
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~p--GvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWA--GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCC--CceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 6899999999999999999998875433323 3333333333332455677899999765532110 0112
Q ss_pred -cccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 441 -LAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 441 -~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
...+|++++|+|+++.++-. .+..++.+. ++|+++|+||+|+.+++....+.+++++.++++++
T Consensus 82 ~~~~aD~vI~VvDat~ler~l---~l~~ql~e~------giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVv 146 (772)
T PRK09554 82 LSGDADLLINVVDASNLERNL---YLTLQLLEL------GIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVI 146 (772)
T ss_pred hccCCCEEEEEecCCcchhhH---HHHHHHHHc------CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEE
Confidence 24799999999998864422 233444433 69999999999987654445567888888998764
No 463
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.39 E-value=5.3e-12 Score=118.91 Aligned_cols=119 Identities=17% Similarity=0.166 Sum_probs=77.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc---cccceeCCeeEEEEEeCCCCccchhh---HHHhhh-
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR---LPEDFYPDRVPITIIDTPSSVEDRGK---LGEELR- 85 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt---~~~~~~~~~~~~~l~Dt~G~~~~~~~---~~~~~~- 85 (514)
..+.++|+|+|.+||||||++|+|++++... .+.....+ ........+.++.+|||||+.+.... ....++
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~--vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIAT--VSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCccc--ccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 3567999999999999999999999987422 11121111 11223346789999999999765322 112222
Q ss_pred -----ccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCC---CCcEEEEEecccCccc
Q 010254 86 -----RADAVVLTYACDRPETLDELSTFWLPELRRLEV---KVPVIVVGCKLDLRDE 134 (514)
Q Consensus 86 -----~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~ 134 (514)
..|++|+|..++.. .+...+..++..+..... -.++|+|.|++|....
T Consensus 113 ~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 69999999765532 233333336666655431 3679999999997743
No 464
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.38 E-value=4.7e-12 Score=117.98 Aligned_cols=122 Identities=23% Similarity=0.147 Sum_probs=79.8
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccc--ccceeCCeeEEEEEeCCCCccch--hh-------
Q 010254 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRL--PEDFYPDRVPITIIDTPSSVEDR--GK------- 79 (514)
Q Consensus 11 ~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~--~~~~~~~~~~~~l~Dt~G~~~~~--~~------- 79 (514)
+.....++|+|+|.+|||||||+|+|++...... ....++|+. ......++.++.+|||||+.+.. ..
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v-~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAAT-SAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHH
Confidence 3456789999999999999999999999874222 222233332 22233457889999999997652 11
Q ss_pred -HHHhhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCC---CCcEEEEEecccCccc
Q 010254 80 -LGEELR--RADAVVLTYACDRPETLDELSTFWLPELRRLEV---KVPVIVVGCKLDLRDE 134 (514)
Q Consensus 80 -~~~~~~--~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~ 134 (514)
+..+++ ..|++++|..++.. .+...+..++..++.... -.++++|.||+|....
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~-r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMY-RRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCC-CCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 122332 67899999776642 222232236666665321 2679999999998754
No 465
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.38 E-value=1.4e-11 Score=118.30 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=106.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC----CCC---------CCCCCCCCC---cccccce--------e---CCeeEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAAD----TFP---------ANVPPVLPP---TRLPEDF--------Y---PDRVPITII 68 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~----~~~---------~~~~~~~~~---tt~~~~~--------~---~~~~~~~l~ 68 (514)
++.|+|+|+.|+|||||||+|++. +.. ...++..+| +|.+..+ . .-..+++++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 589999999999999999999998 432 115555666 4422222 1 224789999
Q ss_pred eCCCCccchh-------h----------------------HHHhhh-ccCEEEEEE-eCC----CcccHHHHHHHHHHHH
Q 010254 69 DTPSSVEDRG-------K----------------------LGEELR-RADAVVLTY-ACD----RPETLDELSTFWLPEL 113 (514)
Q Consensus 69 Dt~G~~~~~~-------~----------------------~~~~~~-~ad~ii~v~-d~~----~~~s~~~~~~~~~~~l 113 (514)
||+|...... . ++..+. .+|+.|+|. |.+ .++.+.+.+..|+..+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 9999742211 1 244566 899999999 764 2345666777799999
Q ss_pred HhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 114 RRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 114 ~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
++. ++|+++|+||+|-... . ..+....+.++|+. +++.+|+..-. ..++..+++.+.-.+|
T Consensus 177 k~~--~kPfiivlN~~dp~~~---e-t~~l~~~l~eky~v--pvl~v~c~~l~----------~~DI~~il~~vL~EFP 237 (492)
T TIGR02836 177 KEL--NKPFIILLNSTHPYHP---E-TEALRQELEEKYDV--PVLAMDVESMR----------ESDILSVLEEVLYEFP 237 (492)
T ss_pred Hhc--CCCEEEEEECcCCCCc---h-hHHHHHHHHHHhCC--ceEEEEHHHcC----------HHHHHHHHHHHHhcCC
Confidence 998 9999999999994332 1 11223455566653 77888887653 2356666655554444
No 466
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.38 E-value=2.6e-12 Score=126.99 Aligned_cols=123 Identities=20% Similarity=0.260 Sum_probs=92.0
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..++|+++|+.||||||||-+|+..++....+ ..-.+..+..--.+ ......++||...+...... ...+++||++
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP-~rl~~i~IPadvtP-e~vpt~ivD~ss~~~~~~~l--~~EirkA~vi 83 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVP-RRLPRILIPADVTP-ENVPTSIVDTSSDSDDRLCL--RKEIRKADVI 83 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhcccccc-ccCCccccCCccCc-CcCceEEEecccccchhHHH--HHHHhhcCEE
Confidence 45899999999999999999999999987663 22223333322223 33346678886544433332 4678999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 010254 448 VFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 495 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 495 (514)
++||+++++++.+.+. .|+..+++..... .++|+|+||||+|+....
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~-~~~PVILvGNK~d~~~~~ 131 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDY-HETPVILVGNKSDNGDNE 131 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCC-ccCCEEEEeeccCCcccc
Confidence 9999999999999984 6999998876443 389999999999997654
No 467
>PRK13796 GTPase YqeH; Provisional
Probab=99.37 E-value=9.5e-12 Score=123.07 Aligned_cols=91 Identities=20% Similarity=0.203 Sum_probs=57.5
Q ss_pred HHhhhccC-EEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccccc-chhHhhhhHHHHHHHhc-cCcE
Q 010254 81 GEELRRAD-AVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ-QVSLEQVMMPIMQQFRE-IETC 157 (514)
Q Consensus 81 ~~~~~~ad-~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~-~~~~ 157 (514)
...+..+| +|++|+|+.+... .|.+.+.+...++|+++|+||+|+.+... .....+....+++.++. ...+
T Consensus 63 l~~i~~~~~lIv~VVD~~D~~~------s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v 136 (365)
T PRK13796 63 LNGIGDSDALVVNVVDIFDFNG------SWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDV 136 (365)
T ss_pred HHhhcccCcEEEEEEECccCCC------chhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcE
Confidence 34456666 9999999876432 25556655444789999999999975311 11111222233333331 1268
Q ss_pred EEcCccccccceecCCCCChhhHHHHHHHHHH
Q 010254 158 IECSALKQIQVKCFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 158 i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~ 189 (514)
+.+||+++. |+++|++.|.+
T Consensus 137 ~~vSAk~g~------------gI~eL~~~I~~ 156 (365)
T PRK13796 137 VLISAQKGH------------GIDELLEAIEK 156 (365)
T ss_pred EEEECCCCC------------CHHHHHHHHHH
Confidence 999999999 88888776643
No 468
>PRK12740 elongation factor G; Reviewed
Probab=99.37 E-value=8.2e-12 Score=134.40 Aligned_cols=109 Identities=21% Similarity=0.199 Sum_probs=77.5
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCC-CCC--------------CCCcccc---cceeCCeeEEEEEeCCCCccchhhHHHh
Q 010254 22 CGEKGTGKSSLIVTAAADTFPANV-PPV--------------LPPTRLP---EDFYPDRVPITIIDTPSSVEDRGKLGEE 83 (514)
Q Consensus 22 vG~~nvGKSsLin~l~~~~~~~~~-~~~--------------~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 83 (514)
+|++|+|||||+++|+...-.... ... ..+.|+. ..+..+++.+.+|||||+.++...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999654311110 000 1122211 2344568899999999998877778888
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc
Q 010254 84 LRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 84 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 134 (514)
+..+|++++|+|++......... ++..+... ++|+++|+||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~--~~~~~~~~--~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTET--VWRQAEKY--GVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHH--HHHHHHHc--CCCEEEEEECCCCCCC
Confidence 99999999999998876655443 44455554 7999999999998643
No 469
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.37 E-value=8.8e-12 Score=102.87 Aligned_cols=105 Identities=19% Similarity=0.343 Sum_probs=68.5
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCC-CCCccEEEEEEECCCCcEEEEEEecCChh----------HHHhhhcCcc
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTP-TTDERYAVNVVDQPGGTKKTVVLREIPEE----------AVAKLLSNKD 439 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~dt~g~~----------~~~~~~~~~~ 439 (514)
+|+++|.+|+|||||+|+|++......+.. ..+.......+... ...+.++||+|-. .+... ..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~~~vDtpG~~~~~~~~~~~~~~~~~---~~ 75 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYN--NKKFILVDTPGINDGESQDNDGKEIRKF---LE 75 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEET--TEEEEEEESSSCSSSSHHHHHHHHHHHH---HH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeec--eeeEEEEeCCCCcccchhhHHHHHHHHH---HH
Confidence 689999999999999999999765444443 33333333344443 3444688999931 11122 34
Q ss_pred ccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeC
Q 010254 440 SLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAK 488 (514)
Q Consensus 440 ~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 488 (514)
.+..+|++++|+|++++.. +.....+..+. . +.|+++|.||
T Consensus 76 ~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~--~-----~~~~i~v~NK 116 (116)
T PF01926_consen 76 QISKSDLIIYVVDASNPIT-EDDKNILRELK--N-----KKPIILVLNK 116 (116)
T ss_dssp HHCTESEEEEEEETTSHSH-HHHHHHHHHHH--T-----TSEEEEEEES
T ss_pred HHHHCCEEEEEEECCCCCC-HHHHHHHHHHh--c-----CCCEEEEEcC
Confidence 5589999999999887421 22223333342 2 6999999998
No 470
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.37 E-value=1.7e-12 Score=118.36 Aligned_cols=120 Identities=21% Similarity=0.251 Sum_probs=90.8
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCCh------hHHH---hhh-c
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE------EAVA---KLL-S 436 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~------~~~~---~~~-~ 436 (514)
...+.|++||.||||||||.|.+++.+...++....|++-.+-.+... +.....++||+|. ..+. ++. .
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 456899999999999999999999999999998888888887777777 6677778899991 1111 111 2
Q ss_pred CccccccCcEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 437 NKDSLAACDIAVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 437 ~~~~~~~~d~vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
....+..||++++|+|+++. -..+. ..+..+..+. ++|-++|.||+|....
T Consensus 149 ~~~a~q~AD~vvVv~Das~t--r~~l~p~vl~~l~~ys-----~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASAT--RTPLHPRVLHMLEEYS-----KIPSILVMNKIDKLKQ 200 (379)
T ss_pred HHHHHhhCCEEEEEEeccCC--cCccChHHHHHHHHHh-----cCCceeeccchhcchh
Confidence 34567889999999999963 22222 2344455555 7999999999998764
No 471
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.36 E-value=3.8e-12 Score=116.51 Aligned_cols=132 Identities=15% Similarity=0.096 Sum_probs=79.2
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCC-----------------------------CCCCccEEEEEEECCCCcEEEE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYT-----------------------------PTTDERYAVNVVDQPGGTKKTV 421 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 421 (514)
+|+++|.+|+|||||+++|+......... ...+.........+..+...+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999998654332210 0011111111122222445667
Q ss_pred EEecCChhHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-----c
Q 010254 422 VLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-----M 496 (514)
Q Consensus 422 i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-----~ 496 (514)
++||+|.+.|.... ...++.+|++++|+|+++.. .........+..... ..++|+|+||+|+.... .
T Consensus 81 liDTpG~~~~~~~~--~~~~~~ad~~llVvD~~~~~--~~~~~~~~~~~~~~~----~~~iIvviNK~D~~~~~~~~~~~ 152 (208)
T cd04166 81 IADTPGHEQYTRNM--VTGASTADLAILLVDARKGV--LEQTRRHSYILSLLG----IRHVVVAVNKMDLVDYSEEVFEE 152 (208)
T ss_pred EEECCcHHHHHHHH--HHhhhhCCEEEEEEECCCCc--cHhHHHHHHHHHHcC----CCcEEEEEEchhcccCCHHHHHH
Confidence 89999998876543 35678999999999998762 222222222222220 24578899999986421 1
Q ss_pred chhhHHHHHHHcCC
Q 010254 497 AIQDSTRVFTFLVM 510 (514)
Q Consensus 497 ~~~~~~~~~~~~~~ 510 (514)
...+..++++.+++
T Consensus 153 i~~~~~~~~~~~~~ 166 (208)
T cd04166 153 IVADYLAFAAKLGI 166 (208)
T ss_pred HHHHHHHHHHHcCC
Confidence 13445566666664
No 472
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.36 E-value=1.2e-11 Score=117.48 Aligned_cols=138 Identities=15% Similarity=0.172 Sum_probs=84.2
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCC--------CCCCccE--EEEEEECCCCcEEEEEEecCChh---------
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT--------PTTDERY--AVNVVDQPGGTKKTVVLREIPEE--------- 429 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~i~dt~g~~--------- 429 (514)
.++|+++|++|+|||||+|+|++..+..... ...+... ....+..++....+.+|||+|-.
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 5899999999999999999999998765432 1222222 22233334223456699999921
Q ss_pred ---------HHHhhhc-----Cc-cccc--cCcEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCC
Q 010254 430 ---------AVAKLLS-----NK-DSLA--ACDIAVFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDL 491 (514)
Q Consensus 430 ---------~~~~~~~-----~~-~~~~--~~d~vilv~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 491 (514)
+|...+. .+ ..+. ++|+++++++.+.. .+... ...+..+.. ++|+++|+||+|+
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~~-------~v~vi~VinK~D~ 155 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLSK-------RVNIIPVIAKADT 155 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHhc-------cCCEEEEEECCCc
Confidence 1111110 01 2233 57888888887642 12222 222333321 5899999999999
Q ss_pred cccc---cchhhHHHHHHHcCCcccC
Q 010254 492 DSFA---MAIQDSTRVFTFLVMVLYK 514 (514)
Q Consensus 492 ~~~~---~~~~~~~~~~~~~~~~~~~ 514 (514)
.... .......+.++.+++++|.
T Consensus 156 l~~~e~~~~k~~i~~~l~~~~i~~~~ 181 (276)
T cd01850 156 LTPEELKEFKQRIMEDIEEHNIKIYK 181 (276)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCceEC
Confidence 6532 3456677888888888763
No 473
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.35 E-value=2.4e-12 Score=134.77 Aligned_cols=127 Identities=16% Similarity=0.115 Sum_probs=86.3
Q ss_pred CCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhc----Cccc--cccCcEEEE
Q 010254 376 GPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLS----NKDS--LAACDIAVF 449 (514)
Q Consensus 376 G~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~----~~~~--~~~~d~vil 449 (514)
|+||||||||+|+|.+........++.|.+.....+..+ + ..+.+|||+|.+.+..... .+.+ .+.+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~-~-~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQ-G-EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEEC-C-eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 899999999999999987654444555544444455554 3 3467899999876543210 0112 247899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
|+|+++.+. ...+..++.+. ++|+++|+||+|+.+++....+.+++++.++++++
T Consensus 79 VvDat~ler---~l~l~~ql~~~------~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv 133 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLEL------GIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVV 133 (591)
T ss_pred EecCCcchh---hHHHHHHHHhc------CCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEE
Confidence 999987532 22333333332 69999999999997654334567888999888765
No 474
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.35 E-value=1.8e-14 Score=121.12 Aligned_cols=142 Identities=18% Similarity=0.222 Sum_probs=117.5
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEE-EEEEecCChhHHHhhhcCccccccCcE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKK-TVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
..+|++|+|.-++||||++.+++...|+..|..+++.++..+.+..++.... ..+||-+|+++|..+. +-+++.+++
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mt--rVyykea~~ 101 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMT--RVYYKEAHG 101 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceE--EEEecCCcc
Confidence 4579999999999999999999999999999999999999888877744433 3489999999998766 678899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcC-CCCCCCCcEEEEEeCCCCcccccc--hhhHHHHHHHcCCc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYG-EDTGFEVPCLIVAAKDDLDSFAMA--IQDSTRVFTFLVMV 511 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~-~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~ 511 (514)
..+|||++...+|+....|..++.... ...+..+|+|+.+||+|..+.... .....+|++++|+.
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~ 169 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFE 169 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCcc
Confidence 999999999999999999999876642 233346889999999998875422 45677788888763
No 475
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.35 E-value=5.1e-12 Score=131.28 Aligned_cols=111 Identities=18% Similarity=0.211 Sum_probs=75.2
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECC--CC--------------cEEEEEEecCChhHHHhh
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP--GG--------------TKKTVVLREIPEEAVAKL 434 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------------~~~~~i~dt~g~~~~~~~ 434 (514)
-|+++|.+|+|||||+++|.+..+........+.+.....+..+ .+ ...+.+|||+|++.|..+
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 48999999999999999999987754332211111111111111 00 012668999999999887
Q ss_pred hcCccccccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 435 LSNKDSLAACDIAVFVHDSSD---ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 435 ~~~~~~~~~~d~vilv~D~~~---~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
+ ...++.+|++++|||+++ +.+++.+.. +.. . ++|+++++||+|+..
T Consensus 86 ~--~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~-~-----~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 86 R--KRGGALADLAILIVDINEGFKPQTQEALNI----LRM-Y-----KTPFVVAANKIDRIP 135 (590)
T ss_pred H--HHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH-c-----CCCEEEEEECCCccc
Confidence 6 467789999999999997 444443332 222 1 689999999999964
No 476
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.34 E-value=1.5e-11 Score=116.28 Aligned_cols=131 Identities=15% Similarity=0.041 Sum_probs=81.7
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCC---------C-----------CCCccEEEEEEECCCCcEEEEEEecCChh
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYT---------P-----------TTDERYAVNVVDQPGGTKKTVVLREIPEE 429 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~~~~~~~~i~dt~g~~ 429 (514)
.+|+++|.+|+|||||+++|+...-..... . ..+.........+..+...+.+|||+|..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 369999999999999999998532111100 0 01222233333344356677899999998
Q ss_pred HHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcC
Q 010254 430 AVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV 509 (514)
Q Consensus 430 ~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 509 (514)
.|.... ...++.+|++++|+|+++....+ ...++...... ++|+++++||+|+..... .....++.+.++
T Consensus 83 df~~~~--~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~~------~~P~iivvNK~D~~~a~~-~~~~~~l~~~l~ 152 (267)
T cd04169 83 DFSEDT--YRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRLR------GIPIITFINKLDREGRDP-LELLDEIEEELG 152 (267)
T ss_pred HHHHHH--HHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHhc------CCCEEEEEECCccCCCCH-HHHHHHHHHHHC
Confidence 877544 46788999999999998763211 22333322222 699999999999865321 112334444455
Q ss_pred C
Q 010254 510 M 510 (514)
Q Consensus 510 ~ 510 (514)
.
T Consensus 153 ~ 153 (267)
T cd04169 153 I 153 (267)
T ss_pred C
Confidence 4
No 477
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.33 E-value=7.6e-14 Score=117.41 Aligned_cols=160 Identities=18% Similarity=0.231 Sum_probs=117.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc--ceeC-CeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE--DFYP-DRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~--~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
+++.|+|.-+|||||++.+.+...|..++-.+++.-..-. ..+. .-+++.|||.+|++++..+..-+++++++..+|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 7999999999999999999998887555443222111000 1111 135788999999999998888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccc
Q 010254 94 YACDRPETLDELSTFWLPELRRLE-----VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~ 168 (514)
||++...+|+.... |.+.+.... ...|+++..||||..... .......+..+.++.+ +...+++|+|.+.
T Consensus 106 fdvt~s~tfe~~sk-wkqdldsk~qLpng~Pv~~vllankCd~e~~a-~~~~~~~~d~f~keng-f~gwtets~Kenk-- 180 (229)
T KOG4423|consen 106 FDVTRSLTFEPVSK-WKQDLDSKLQLPNGTPVPCVLLANKCDQEKSA-KNEATRQFDNFKKENG-FEGWTETSAKENK-- 180 (229)
T ss_pred EEccccccccHHHH-HHHhccCcccCCCCCcchheeccchhccChHh-hhhhHHHHHHHHhccC-ccceeeecccccc--
Confidence 99999999999886 888776542 347899999999987651 1111123334444443 4589999999999
Q ss_pred eecCCCCChhhHHHHHHHHHHHh
Q 010254 169 KCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 169 ~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
++++..+.+.+.+
T Consensus 181 ----------ni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 181 ----------NIPEAQRELVEKI 193 (229)
T ss_pred ----------ChhHHHHHHHHHH
Confidence 7777777766654
No 478
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.8e-11 Score=106.15 Aligned_cols=115 Identities=23% Similarity=0.320 Sum_probs=88.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhh---ccCEEEEE
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELR---RADAVVLT 93 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~ad~ii~v 93 (514)
-.|.++|..++|||+||-.|..+.+...+++..|. ...+..+...++++|.||+.+.+....++++ .+-+|+||
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn---~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV 115 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPN---EATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV 115 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeeeccc---eeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence 46999999999999999999988654444443332 2234444556999999999998888888887 89999999
Q ss_pred EeCCC-cccHHHHHHHHHHHHHhc---CCCCcEEEEEecccCccc
Q 010254 94 YACDR-PETLDELSTFWLPELRRL---EVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 94 ~d~~~-~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~~~ 134 (514)
+|... .....++.++++..+... ....|++|++||.|+.-.
T Consensus 116 VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 116 VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 99753 445666666777777665 246899999999998765
No 479
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.32 E-value=1.1e-11 Score=115.24 Aligned_cols=115 Identities=16% Similarity=0.074 Sum_probs=77.4
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCC-----CC-----------CCCCccEEEEEEECCCCcEEEEEEecCChhHHHhh
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDN-----YT-----------PTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKL 434 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~ 434 (514)
+|+++|.+|+|||||+++|+...-... .. ...+.........+..+...+.+|||+|...|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 489999999999999999986422110 00 01122222223333334567778999999888765
Q ss_pred hcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 435 LSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 435 ~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
. ...++.+|++++|+|+++.... ....++..+... ++|+++++||+|+...
T Consensus 81 ~--~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~------~~P~iivvNK~D~~~a 131 (237)
T cd04168 81 V--ERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL------NIPTIIFVNKIDRAGA 131 (237)
T ss_pred H--HHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc------CCCEEEEEECccccCC
Confidence 5 5688999999999999987433 233444444333 6999999999998753
No 480
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.32 E-value=1.4e-11 Score=129.05 Aligned_cols=124 Identities=13% Similarity=0.104 Sum_probs=86.1
Q ss_pred EEEEeCCCCCChHHHHHHhhCCC---CCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRP---FSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
.|+++|.+++|||||+++|++.. +......+.|.+.....+..+ + ..+.+||++|++.|...+ ...+.++|++
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~-~-~~v~~iDtPGhe~f~~~~--~~g~~~aD~a 77 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLP-D-YRLGFIDVPGHEKFISNA--IAGGGGIDAA 77 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeC-C-EEEEEEECCCHHHHHHHH--HhhhccCCEE
Confidence 58999999999999999999743 322333444544544555555 3 667799999999887655 4677899999
Q ss_pred EEEEeCCCh---hhHHHHHHHHHHHHhcCCCCCCCCc-EEEEEeCCCCccccc---chhhHHHHHHHc
Q 010254 448 VFVHDSSDE---SSWKRATELLVEVASYGEDTGFEVP-CLIVAAKDDLDSFAM---AIQDSTRVFTFL 508 (514)
Q Consensus 448 ilv~D~~~~---~s~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~---~~~~~~~~~~~~ 508 (514)
++|+|+++. .+++.+. .+... ++| +++|+||+|+..... ...+..++++.+
T Consensus 78 ILVVDa~~G~~~qT~ehl~----il~~l------gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~ 135 (581)
T TIGR00475 78 LLVVDADEGVMTQTGEHLA----VLDLL------GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSY 135 (581)
T ss_pred EEEEECCCCCcHHHHHHHH----HHHHc------CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999983 3443332 22222 577 999999999976431 234555666554
No 481
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.31 E-value=7.1e-12 Score=98.70 Aligned_cols=138 Identities=21% Similarity=0.269 Sum_probs=93.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhH----HHhhhccCEEEEE
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKL----GEELRRADAVVLT 93 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~----~~~~~~ad~ii~v 93 (514)
||+++|+.|+|||||+|+|.|... -+. .|.-+++... -.+||||..-....+ .....++|++++|
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lyk-----KTQAve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v 71 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYK-----KTQAVEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIYV 71 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhc-----ccceeeccCc----cccCCchhhhhhhHHHHHHHHHhhccceeeee
Confidence 799999999999999999998762 221 1222333222 258999953222222 3346899999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCC
Q 010254 94 YACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNS 173 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~ 173 (514)
-.++++++.-. +.+.... .+|+|-|++|.|+.++ ..++ ....+..+-+ -.++|++|+.++.
T Consensus 72 ~~and~~s~f~------p~f~~~~-~k~vIgvVTK~DLaed---~dI~-~~~~~L~eaG-a~~IF~~s~~d~~------- 132 (148)
T COG4917 72 HAANDPESRFP------PGFLDIG-VKKVIGVVTKADLAED---ADIS-LVKRWLREAG-AEPIFETSAVDNQ------- 132 (148)
T ss_pred ecccCccccCC------ccccccc-ccceEEEEecccccch---HhHH-HHHHHHHHcC-CcceEEEeccCcc-------
Confidence 99999876322 2222222 4669999999999865 2222 2233444444 3499999999998
Q ss_pred CCChhhHHHHHHHHHHH
Q 010254 174 PLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 174 ~l~~~~i~~L~~~i~~~ 190 (514)
|+++|++.+...
T Consensus 133 -----gv~~l~~~L~~~ 144 (148)
T COG4917 133 -----GVEELVDYLASL 144 (148)
T ss_pred -----cHHHHHHHHHhh
Confidence 999999888653
No 482
>COG2262 HflX GTPases [General function prediction only]
Probab=99.31 E-value=3.2e-11 Score=115.54 Aligned_cols=122 Identities=20% Similarity=0.227 Sum_probs=91.4
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCC---------hhHHHhhhc
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIP---------EEAVAKLLS 436 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g---------~~~~~~~~~ 436 (514)
......|+++|-.|+|||||+|+|.+........-..|.+-+...+.++ +....++.||+| .+.|.+.
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~-~g~~vlLtDTVGFI~~LP~~LV~AFksT-- 265 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELG-DGRKVLLTDTVGFIRDLPHPLVEAFKST-- 265 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeC-CCceEEEecCccCcccCChHHHHHHHHH--
Confidence 3456789999999999999999999877655554555666666778887 566777889999 3444433
Q ss_pred CccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 437 NKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 437 ~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
.+....+|+++.|+|++++...+.+.....-+...... ..|+|+|.||+|+...
T Consensus 266 -LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~---~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 266 -LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGAD---EIPIILVLNKIDLLED 319 (411)
T ss_pred -HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCC---CCCEEEEEecccccCc
Confidence 46778999999999999996655555544444443222 6999999999997654
No 483
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.30 E-value=3.3e-11 Score=108.55 Aligned_cols=132 Identities=14% Similarity=0.069 Sum_probs=82.2
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCC------CCCCCCC--------CCCCccEEEEEEECCCCcEEEEEEecCChhHHHhh
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGR------PFSDNYT--------PTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKL 434 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~ 434 (514)
.++|+++|..++|||||+++|++. .....+. ...+.........+..+...+.++||+|...|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 378999999999999999999854 1111110 12233333333444334556678899998877654
Q ss_pred hcCccccccCcEEEEEEeCCChhhHHHHHH-HHHHHHhcCCCCCCCCc-EEEEEeCCCCcccccc----hhhHHHHHHHc
Q 010254 435 LSNKDSLAACDIAVFVHDSSDESSWKRATE-LLVEVASYGEDTGFEVP-CLIVAAKDDLDSFAMA----IQDSTRVFTFL 508 (514)
Q Consensus 435 ~~~~~~~~~~d~vilv~D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~----~~~~~~~~~~~ 508 (514)
. ...+..+|++++|+|++.. ...... .+..+... ++| +|++.||+|+..+... ..+..++..++
T Consensus 82 ~--~~~~~~~D~~ilVvda~~g--~~~~~~~~~~~~~~~------~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~ 151 (195)
T cd01884 82 M--ITGAAQMDGAILVVSATDG--PMPQTREHLLLARQV------GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKY 151 (195)
T ss_pred H--HHHhhhCCEEEEEEECCCC--CcHHHHHHHHHHHHc------CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 4 5677899999999999875 223322 23333333 576 7789999998643221 23455555544
Q ss_pred CC
Q 010254 509 VM 510 (514)
Q Consensus 509 ~~ 510 (514)
++
T Consensus 152 g~ 153 (195)
T cd01884 152 GF 153 (195)
T ss_pred cc
Confidence 43
No 484
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.30 E-value=4.9e-11 Score=110.76 Aligned_cols=118 Identities=21% Similarity=0.250 Sum_probs=90.2
Q ss_pred ccCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCCh------h----HHHhh
Q 010254 365 AERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE------E----AVAKL 434 (514)
Q Consensus 365 ~~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~------~----~~~~~ 434 (514)
.+.....|+|.|.||||||||++++.+.+....+.|-+|....+..+.. +...+.++||+|- | +.+++
T Consensus 164 Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~--~~~R~QvIDTPGlLDRPl~ErN~IE~qAi 241 (346)
T COG1084 164 IDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFER--GYLRIQVIDTPGLLDRPLEERNEIERQAI 241 (346)
T ss_pred CCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeec--CCceEEEecCCcccCCChHHhcHHHHHHH
Confidence 3456678999999999999999999999988888787776666666554 4456778899991 1 11212
Q ss_pred hcCcccc-ccCcEEEEEEeCCCh--hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 435 LSNKDSL-AACDIAVFVHDSSDE--SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 435 ~~~~~~~-~~~d~vilv~D~~~~--~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
. .+ .=.++|++++|.|.. -+.+.+...+.++.... +.|+++|.||+|...
T Consensus 242 ~----AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f-----~~p~v~V~nK~D~~~ 294 (346)
T COG1084 242 L----ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF-----KAPIVVVINKIDIAD 294 (346)
T ss_pred H----HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc-----CCCeEEEEecccccc
Confidence 1 22 235889999999964 56788888888888765 689999999999875
No 485
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=2.4e-11 Score=116.26 Aligned_cols=154 Identities=20% Similarity=0.150 Sum_probs=100.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCC--CC------------C--------------CCCCCCCccccc---ceeCC
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTF--PA------------N--------------VPPVLPPTRLPE---DFYPD 61 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~--~~------------~--------------~~~~~~~tt~~~---~~~~~ 61 (514)
.+..++++++|+.++|||||+-+|+-.-- .. . ......+.|+.. .+..+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 35679999999999999999999985321 00 0 000112233222 34466
Q ss_pred eeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcc---c--HHHHHHHHHHHHHhcCCCCcEEEEEecccCccccc
Q 010254 62 RVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPE---T--LDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ 136 (514)
Q Consensus 62 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~---s--~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~ 136 (514)
.+.++|+|+||+.++...+...+.+||+.|+|+|+...+ . .......-+-..+.+ .-..+|+++||+|+.+- +
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-Gi~~lIVavNKMD~v~w-d 161 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-GIKQLIVAVNKMDLVSW-D 161 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-CCceEEEEEEccccccc-C
Confidence 788999999999988888888899999999999998762 0 111111111222222 13568999999999863 3
Q ss_pred chhHhhh---hHHHHHHHhcc---CcEEEcCccccccc
Q 010254 137 QVSLEQV---MMPIMQQFREI---ETCIECSALKQIQV 168 (514)
Q Consensus 137 ~~~~~~~---~~~~~~~~~~~---~~~i~~Sa~~~~~~ 168 (514)
+...++. +..+.+.++.. .++++|||..|.|+
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl 199 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNL 199 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcc
Confidence 3344433 33444444432 26999999999955
No 486
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.30 E-value=4.7e-11 Score=101.54 Aligned_cols=119 Identities=17% Similarity=0.184 Sum_probs=86.1
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCC-----C--C---CCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcC
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-----P--T---TDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSN 437 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~-----~--~---~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~ 437 (514)
...||+|+|+-++||||+++++.......+.. . . +++-..+..+.+. +.....+++|+|+++|..++
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~-~~~~v~LfgtPGq~RF~fm~-- 85 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD-EDTGVHLFGTPGQERFKFMW-- 85 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc-CcceEEEecCCCcHHHHHHH--
Confidence 45799999999999999999999888533311 1 1 2333333344444 44555677999999999888
Q ss_pred ccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 010254 438 KDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 495 (514)
Q Consensus 438 ~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 495 (514)
....+++.+.|++.|.+.+..+ .....+.-+.... .+|++|++||.||....
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~-----~ip~vVa~NK~DL~~a~ 137 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN-----PIPVVVAINKQDLFDAL 137 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc-----CCCEEEEeeccccCCCC
Confidence 4677999999999999999777 3333333333332 39999999999998843
No 487
>PTZ00258 GTP-binding protein; Provisional
Probab=99.29 E-value=4e-11 Score=117.65 Aligned_cols=81 Identities=12% Similarity=0.145 Sum_probs=57.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccce---eCC-----------------eeEEEEEeCCCC
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDF---YPD-----------------RVPITIIDTPSS 73 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~---~~~-----------------~~~~~l~Dt~G~ 73 (514)
...++|+|||.||||||||||+|++.+ ..+...|.||+.... ... ..++.++||||+
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~---~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL 95 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ---VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL 95 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc---ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence 567899999999999999999998876 234445666633211 111 235899999998
Q ss_pred ccchh-------hHHHhhhccCEEEEEEeCC
Q 010254 74 VEDRG-------KLGEELRRADAVVLTYACD 97 (514)
Q Consensus 74 ~~~~~-------~~~~~~~~ad~ii~v~d~~ 97 (514)
..... .....++++|++++|+|+.
T Consensus 96 v~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 96 VKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 64321 2234578999999999974
No 488
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.29 E-value=5.4e-12 Score=110.14 Aligned_cols=120 Identities=21% Similarity=0.245 Sum_probs=73.3
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEEC-CCCcEEEEEEecCChhHHHhhh-cCccccccCcEEE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQ-PGGTKKTVVLREIPEEAVAKLL-SNKDSLAACDIAV 448 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~dt~g~~~~~~~~-~~~~~~~~~d~vi 448 (514)
.|+++|++|+|||+|..+|..+....+..+. .. . ....+ ......+.++|.+|+++.+... ....++..+.+||
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~--n-~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-EN--N-IAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B---S-SE--E-EECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cC--C-ceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 4899999999999999999998665444221 11 1 12222 2244566788999987765432 1111467899999
Q ss_pred EEEeCCC-hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 449 FVHDSSD-ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 449 lv~D~~~-~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
+|+|++. ...+.+..+.+..+..........+|++|++||.|+...
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 9999984 455666666666654432211237999999999998764
No 489
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.28 E-value=1.8e-11 Score=124.67 Aligned_cols=139 Identities=14% Similarity=0.067 Sum_probs=85.1
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCC-----------------------------CCCCccEEEEEEECCCC
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-----------------------------PTTDERYAVNVVDQPGG 416 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 416 (514)
+...++|+++|.+++|||||+++|+......... ...+++.......+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 3456899999999999999999998543221100 01222222222233324
Q ss_pred cEEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-
Q 010254 417 TKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA- 495 (514)
Q Consensus 417 ~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~- 495 (514)
...+.+|||+|++.|.... ...+..+|++++|+|+++..++.....+...+..... ..|+++++||+|+....
T Consensus 83 ~~~i~liDtpG~~~~~~~~--~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~----~~~iivviNK~Dl~~~~~ 156 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNM--ITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG----INQLIVAINKMDAVNYDE 156 (425)
T ss_pred CeEEEEEECCCcccchhhH--hhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC----CCeEEEEEEccccccccH
Confidence 5667789999998775433 3456899999999999873223333333333222220 24699999999997421
Q ss_pred ----cchhhHHHHHHHcCC
Q 010254 496 ----MAIQDSTRVFTFLVM 510 (514)
Q Consensus 496 ----~~~~~~~~~~~~~~~ 510 (514)
...++..++.+.+++
T Consensus 157 ~~~~~~~~~i~~~l~~~g~ 175 (425)
T PRK12317 157 KRYEEVKEEVSKLLKMVGY 175 (425)
T ss_pred HHHHHHHHHHHHHHHhhCC
Confidence 123455566665554
No 490
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.28 E-value=2.6e-11 Score=117.70 Aligned_cols=149 Identities=18% Similarity=0.193 Sum_probs=100.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc---cccceeCCeeEEEEEeCCCCccch----hhH-----
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR---LPEDFYPDRVPITIIDTPSSVEDR----GKL----- 80 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt---~~~~~~~~~~~~~l~Dt~G~~~~~----~~~----- 80 (514)
..+.-.++|+|-||||||||+|.++... ..+.+ .+.|| ....++..-..+.++||||+-+-. ..+
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtrad--vevqp-YaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsI 241 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRAD--DEVQP-YAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQII 241 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccc--cccCC-cccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHH
Confidence 3456789999999999999999888776 33333 34444 334555666789999999985322 111
Q ss_pred HHhhhccCEEEEEEeCCC--cccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccC--c
Q 010254 81 GEELRRADAVVLTYACDR--PETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIE--T 156 (514)
Q Consensus 81 ~~~~~~ad~ii~v~d~~~--~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~ 156 (514)
.+...--.+|+++.|++. +-|...... ++..++..+.++|+|+|+||+|+... ....+.-+++.+.+.... +
T Consensus 242 TALAHLraaVLYfmDLSe~CGySva~Qvk-LfhsIKpLFaNK~~IlvlNK~D~m~~---edL~~~~~~ll~~~~~~~~v~ 317 (620)
T KOG1490|consen 242 TALAHLRSAVLYFMDLSEMCGYSVAAQVK-LYHSIKPLFANKVTILVLNKIDAMRP---EDLDQKNQELLQTIIDDGNVK 317 (620)
T ss_pred HHHHHhhhhheeeeechhhhCCCHHHHHH-HHHHhHHHhcCCceEEEeecccccCc---cccCHHHHHHHHHHHhccCce
Confidence 122334457888999874 566655543 77777777779999999999998765 223333344444443322 6
Q ss_pred EEEcCccccccc
Q 010254 157 CIECSALKQIQV 168 (514)
Q Consensus 157 ~i~~Sa~~~~~~ 168 (514)
++++|+.+.+||
T Consensus 318 v~~tS~~~eegV 329 (620)
T KOG1490|consen 318 VVQTSCVQEEGV 329 (620)
T ss_pred EEEecccchhce
Confidence 899999999843
No 491
>PRK13768 GTPase; Provisional
Probab=99.28 E-value=8.7e-11 Score=110.41 Aligned_cols=120 Identities=20% Similarity=0.158 Sum_probs=75.1
Q ss_pred eEEEEEeCCCCccchh---hH---HHhhhc--cCEEEEEEeCCCcccHHHHHHH-HHHHHHhcCCCCcEEEEEecccCcc
Q 010254 63 VPITIIDTPSSVEDRG---KL---GEELRR--ADAVVLTYACDRPETLDELSTF-WLPELRRLEVKVPVIVVGCKLDLRD 133 (514)
Q Consensus 63 ~~~~l~Dt~G~~~~~~---~~---~~~~~~--ad~ii~v~d~~~~~s~~~~~~~-~~~~l~~~~~~~pvilv~NK~Dl~~ 133 (514)
..+.+|||||+.+... .. ...+.. ++++++|+|+....+..+.... |+........++|+++|+||+|+.+
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 3689999999865432 22 222333 8999999999765544443321 2222221123899999999999976
Q ss_pred cccchhHhhhhH------------------------HHHHHHhccCcEEEcCccccccceecCCCCChhhHHHHHHHHHH
Q 010254 134 ENQQVSLEQVMM------------------------PIMQQFREIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 134 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~ 189 (514)
............ +..+.++...+++++||+++. |+++|.+.|.+
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~------------gl~~L~~~I~~ 244 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGE------------GFDELYAAIQE 244 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCc------------CHHHHHHHHHH
Confidence 521111111111 112233323478999999999 99999999999
Q ss_pred HhcCc
Q 010254 190 KLREG 194 (514)
Q Consensus 190 ~~~~~ 194 (514)
.++..
T Consensus 245 ~l~~~ 249 (253)
T PRK13768 245 VFCGG 249 (253)
T ss_pred HcCCC
Confidence 88653
No 492
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.28 E-value=2.2e-11 Score=112.05 Aligned_cols=113 Identities=14% Similarity=0.102 Sum_probs=75.7
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCC-----------------CCCCCccEEEEEE--EC---CCCcEEEEEEecCCh
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNY-----------------TPTTDERYAVNVV--DQ---PGGTKKTVVLREIPE 428 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~-----------------~~~~~~~~~~~~~--~~---~~~~~~~~i~dt~g~ 428 (514)
+|+++|.+++|||||+++|+........ ....+..+....+ .+ .+....+.+|||+|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999876543321 0011111111111 11 223456679999999
Q ss_pred hHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCc
Q 010254 429 EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD 492 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 492 (514)
+.|.... ...+..+|++++|+|+++..++.. ..++...... ++|+++|+||+|+.
T Consensus 82 ~~f~~~~--~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~------~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEV--AAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILE------GLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHH--HHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc------CCCEEEEEECcccC
Confidence 8886554 567889999999999998765532 3343333322 58999999999975
No 493
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.2e-11 Score=100.90 Aligned_cols=118 Identities=20% Similarity=0.282 Sum_probs=93.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
++.-|++++|--|+|||||++.|-+.+.....++-.|++ .....++.+++-+|.+|+......+..++..+|++++.
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTS---E~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS---EELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCCh---HHheecCceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 345699999999999999999999888655555444432 24456789999999999988888899999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCccc
Q 010254 94 YACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~ 134 (514)
+|+-+.+.+.+...++-..+... -.+.|+++.+||+|.+..
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc
Confidence 99999888877665443333222 137999999999999876
No 494
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.26 E-value=2.9e-11 Score=127.70 Aligned_cols=117 Identities=15% Similarity=0.188 Sum_probs=81.7
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEE--EEEECCCCcEEEEEEecCChhHHHhhhcCccccccCc
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAV--NVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 445 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d 445 (514)
...+|+++|.+++|||||+++|.+..+........+.+... ..+...+....+.+|||+|++.|..++ ...+..+|
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr--~rg~~~aD 320 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMR--SRGANVTD 320 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHH--HHHHHHCC
Confidence 44689999999999999999999887765443333322222 223333234667789999999998776 46789999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
++|+|+|+++....+....+ ..+... ++|+|+|+||+|+..
T Consensus 321 iaILVVDA~dGv~~QT~E~I-~~~k~~------~iPiIVViNKiDl~~ 361 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAI-NYIQAA------NVPIIVAINKIDKAN 361 (742)
T ss_pred EEEEEEECcCCCChhhHHHH-HHHHhc------CceEEEEEECCCccc
Confidence 99999999885322222222 122221 699999999999875
No 495
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.26 E-value=5.2e-11 Score=109.12 Aligned_cols=113 Identities=16% Similarity=0.100 Sum_probs=74.5
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCC----------------CCCccEEEEEEECC--------CCcEEEEEEecC
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTP----------------TTDERYAVNVVDQP--------GGTKKTVVLREI 426 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~--------~~~~~~~i~dt~ 426 (514)
+|+++|..++|||||+.+|+...-...... ..+.......+.+. +......+|||+
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 589999999999999999985432111100 01111111112221 124556689999
Q ss_pred ChhHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCc
Q 010254 427 PEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD 492 (514)
Q Consensus 427 g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 492 (514)
|++.|.... ...++.+|++++|+|+++..+.+... .+...... ++|+++|+||+|+.
T Consensus 82 G~~~f~~~~--~~~l~~aD~~ilVvD~~~g~~~~t~~-~l~~~~~~------~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEV--TAALRLCDGALVVVDAVEGVCVQTET-VLRQALKE------RVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHH--HHHHHhcCeeEEEEECCCCCCHHHHH-HHHHHHHc------CCCEEEEEECCCcc
Confidence 999887655 67889999999999999875554322 22222222 58999999999986
No 496
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.26 E-value=3.5e-11 Score=109.14 Aligned_cols=112 Identities=15% Similarity=0.159 Sum_probs=68.6
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCc---cEEEEEEECCCCcEEEEEEecCChhHH----HhhhcCccccc
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDE---RYAVNVVDQPGGTKKTVVLREIPEEAV----AKLLSNKDSLA 442 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~dt~g~~~~----~~~~~~~~~~~ 442 (514)
+||+++|++|+|||||+|.|++.........+.+. ......+... ......+|||+|.... ..... ...+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~-~~~~~ 79 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLE-EMKFS 79 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHH-HhCcc
Confidence 78999999999999999999997654322222221 1111112222 2234568999995321 11111 23467
Q ss_pred cCcEEEEEEeCCChhhHHHHHH-HHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 443 ACDIAVFVHDSSDESSWKRATE-LLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 443 ~~d~vilv~D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
++|++++|.| .+|...+. |+..+... +.|+++|+||+|+..
T Consensus 80 ~~d~~l~v~~----~~~~~~d~~~~~~l~~~------~~~~ilV~nK~D~~~ 121 (197)
T cd04104 80 EYDFFIIISS----TRFSSNDVKLAKAIQCM------GKKFYFVRTKVDRDL 121 (197)
T ss_pred CcCEEEEEeC----CCCCHHHHHHHHHHHHh------CCCEEEEEecccchh
Confidence 8899998854 23555544 34444443 589999999999843
No 497
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.25 E-value=2.6e-11 Score=109.29 Aligned_cols=118 Identities=21% Similarity=0.263 Sum_probs=79.2
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCC------------------CCCCCccEEEEEEECCCCcEEEEEEecCChh
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY------------------TPTTDERYAVNVVDQPGGTKKTVVLREIPEE 429 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~ 429 (514)
..++|+++|..++|||||+.+|+........ ....+................+.++||+|+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 3578999999999999999999855422110 0122333333333312356777788999998
Q ss_pred HHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 430 AVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 430 ~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
.|.... ...+..+|++|+|+|+.+.-..+ ....+..+... ++|+++|.||+|+...
T Consensus 82 ~f~~~~--~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~------~~p~ivvlNK~D~~~~ 137 (188)
T PF00009_consen 82 DFIKEM--IRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL------GIPIIVVLNKMDLIEK 137 (188)
T ss_dssp HHHHHH--HHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT------T-SEEEEEETCTSSHH
T ss_pred ceeecc--cceecccccceeeeecccccccc-ccccccccccc------ccceEEeeeeccchhh
Confidence 887655 46789999999999999773222 22233333333 6999999999999853
No 498
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.25 E-value=1.7e-10 Score=105.67 Aligned_cols=166 Identities=17% Similarity=0.138 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccc--ccceeCCeeEEEEEeCCCCccchh----hHH---H----h
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRL--PEDFYPDRVPITIIDTPSSVEDRG----KLG---E----E 83 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~--~~~~~~~~~~~~l~Dt~G~~~~~~----~~~---~----~ 83 (514)
++|+++|.+|+||||++|.|+|.+......+..+.|.. ......++..+.++||||+.+... ... . .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 58999999999999999999999864443322333331 122245678999999999854321 111 1 2
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCC---CCcEEEEEecccCcccccchh-----HhhhhHHHHHHHhccC
Q 010254 84 LRRADAVVLTYACDRPETLDELSTFWLPELRRLEV---KVPVIVVGCKLDLRDENQQVS-----LEQVMMPIMQQFREIE 155 (514)
Q Consensus 84 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~~~~~~-----~~~~~~~~~~~~~~~~ 155 (514)
..+.|++|+|+.+. +-+-.+. ..+..+.+... -..++||.|..|......... ....+..+.+.++.
T Consensus 81 ~~g~ha~llVi~~~-r~t~~~~--~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~-- 155 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG-RFTEEDR--EVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG-- 155 (212)
T ss_dssp TT-ESEEEEEEETT-B-SHHHH--HHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT--
T ss_pred cCCCeEEEEEEecC-cchHHHH--HHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC--
Confidence 35699999999987 4443332 35555555432 257999999999766522110 11123444555444
Q ss_pred cEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 156 TCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 156 ~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
.+...+.++...- -....+.+|++.|.+.+.+
T Consensus 156 R~~~f~n~~~~~~------~~~~qv~~Ll~~ie~mv~~ 187 (212)
T PF04548_consen 156 RYHVFNNKTKDKE------KDESQVSELLEKIEEMVQE 187 (212)
T ss_dssp CEEECCTTHHHHH------HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeccccchh------hhHHHHHHHHHHHHHHHHH
Confidence 5666665511100 0011567777777766543
No 499
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.25 E-value=6.6e-11 Score=109.92 Aligned_cols=85 Identities=16% Similarity=0.052 Sum_probs=57.1
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHH----hhh-cCccccccCc
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA----KLL-SNKDSLAACD 445 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~----~~~-~~~~~~~~~d 445 (514)
+|+++|++|||||||+|+|.+........+..+.......+.+. ...+.+|||+|..... ... .....++.+|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 68999999999999999999887433332333333333444444 3456789999963221 100 1134678999
Q ss_pred EEEEEEeCCChh
Q 010254 446 IAVFVHDSSDES 457 (514)
Q Consensus 446 ~vilv~D~~~~~ 457 (514)
++++|+|+++..
T Consensus 80 ~il~V~D~t~~~ 91 (233)
T cd01896 80 LILMVLDATKPE 91 (233)
T ss_pred EEEEEecCCcch
Confidence 999999998764
No 500
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.24 E-value=7.6e-11 Score=113.83 Aligned_cols=162 Identities=19% Similarity=0.163 Sum_probs=115.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC-------CCCC-----CCCCCCccc-----cccee---CCeeEEEEEeCCCCcc
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTF-------PANV-----PPVLPPTRL-----PEDFY---PDRVPITIIDTPSSVE 75 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~-------~~~~-----~~~~~~tt~-----~~~~~---~~~~~~~l~Dt~G~~~ 75 (514)
--+..|+-.-..|||||-.||+...- .... .....|.|+ ...|. .+.+.++++||||+-+
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD 88 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 88 (603)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccc
Confidence 34678899999999999999985321 0000 001223331 22232 3578999999999998
Q ss_pred chhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc-c
Q 010254 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE-I 154 (514)
Q Consensus 76 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~ 154 (514)
+.-.....+.-|.++++|+|++++..-+.+.+ .+..+.. +..+|-|+||+||... .. +....++..-++- .
T Consensus 89 FsYEVSRSLAACEGalLvVDAsQGveAQTlAN-~YlAle~---~LeIiPViNKIDLP~A-dp---ervk~eIe~~iGid~ 160 (603)
T COG0481 89 FSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLALEN---NLEIIPVLNKIDLPAA-DP---ERVKQEIEDIIGIDA 160 (603)
T ss_pred eEEEehhhHhhCCCcEEEEECccchHHHHHHH-HHHHHHc---CcEEEEeeecccCCCC-CH---HHHHHHHHHHhCCCc
Confidence 88777788899999999999998876666665 4444444 7899999999999876 22 2222334444431 1
Q ss_pred CcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCcccC
Q 010254 155 ETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREGVNE 197 (514)
Q Consensus 155 ~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~~~ 197 (514)
...+.||||+|. |++++++.|...+|....+
T Consensus 161 ~dav~~SAKtG~------------gI~~iLe~Iv~~iP~P~g~ 191 (603)
T COG0481 161 SDAVLVSAKTGI------------GIEDVLEAIVEKIPPPKGD 191 (603)
T ss_pred chheeEecccCC------------CHHHHHHHHHhhCCCCCCC
Confidence 267999999999 9999999999999876543
Done!