Query 010254
Match_columns 514
No_of_seqs 425 out of 4299
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 23:14:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjg_A GTP-binding protein ENG 100.0 9.5E-40 3.3E-44 332.2 19.4 278 16-495 3-302 (436)
2 4dcu_A GTP-binding protein ENG 100.0 7E-38 2.4E-42 320.3 16.7 292 14-508 21-336 (456)
3 1mky_A Probable GTP-binding pr 100.0 1.5E-36 5.2E-41 308.9 24.3 284 17-495 2-308 (439)
4 4dkx_A RAS-related protein RAB 100.0 7.9E-28 2.7E-32 220.0 16.9 164 13-193 10-176 (216)
5 3gee_A MNME, tRNA modification 99.9 3.9E-28 1.3E-32 246.7 9.5 230 12-272 229-473 (476)
6 3geh_A MNME, tRNA modification 99.9 1.6E-27 5.5E-32 241.3 5.5 225 12-272 220-459 (462)
7 3reg_A RHO-like small GTPase; 99.9 1.2E-25 4E-30 203.3 15.7 169 11-193 18-188 (194)
8 1xzp_A Probable tRNA modificat 99.9 1.7E-27 5.9E-32 242.1 3.6 225 13-272 240-479 (482)
9 3ihw_A Centg3; RAS, centaurin, 99.9 2.1E-25 7.2E-30 199.7 16.7 164 8-191 12-178 (184)
10 4dkx_A RAS-related protein RAB 99.9 8.2E-26 2.8E-30 206.6 13.6 140 369-513 13-153 (216)
11 2atx_A Small GTP binding prote 99.9 8.9E-25 3E-29 197.4 17.5 165 13-191 15-191 (194)
12 1c1y_A RAS-related protein RAP 99.9 9.2E-25 3.2E-29 192.0 17.1 162 14-191 1-165 (167)
13 3q3j_B RHO-related GTP-binding 99.9 6.5E-25 2.2E-29 201.5 16.1 170 10-193 21-203 (214)
14 1mh1_A RAC1; GTP-binding, GTPa 99.9 8.4E-25 2.9E-29 196.0 16.1 168 13-194 2-181 (186)
15 1z0f_A RAB14, member RAS oncog 99.9 1.8E-24 6.3E-29 192.4 18.2 165 11-192 10-177 (179)
16 2gco_A H9, RHO-related GTP-bin 99.9 1.4E-24 4.6E-29 197.4 17.5 172 6-191 15-198 (201)
17 2iwr_A Centaurin gamma 1; ANK 99.9 1E-24 3.6E-29 194.1 16.4 158 14-192 5-168 (178)
18 1m7b_A RND3/RHOE small GTP-bin 99.9 8.7E-25 3E-29 195.8 15.9 165 13-191 4-181 (184)
19 1r2q_A RAS-related protein RAB 99.9 1.6E-24 5.4E-29 191.1 17.4 163 14-193 4-169 (170)
20 1kao_A RAP2A; GTP-binding prot 99.9 2.6E-24 9E-29 188.9 18.0 162 14-192 1-165 (167)
21 1u8z_A RAS-related protein RAL 99.9 2.3E-24 7.8E-29 189.5 17.5 162 14-192 2-166 (168)
22 2gf9_A RAS-related protein RAB 99.9 1.9E-24 6.6E-29 194.4 17.3 165 11-192 17-184 (189)
23 2fg5_A RAB-22B, RAS-related pr 99.9 1.7E-24 5.7E-29 195.3 16.9 164 14-194 21-187 (192)
24 2q3h_A RAS homolog gene family 99.9 9.6E-25 3.3E-29 198.4 15.5 170 9-192 13-194 (201)
25 1z0j_A RAB-22, RAS-related pro 99.9 2.2E-24 7.4E-29 190.3 17.2 162 14-192 4-168 (170)
26 2efe_B Small GTP-binding prote 99.9 3.5E-24 1.2E-28 191.1 18.7 165 13-194 9-176 (181)
27 3bwd_D RAC-like GTP-binding pr 99.9 7.4E-25 2.5E-29 195.7 13.9 165 14-192 6-180 (182)
28 1gwn_A RHO-related GTP-binding 99.9 1.4E-24 4.7E-29 197.9 15.9 165 13-191 25-202 (205)
29 3oes_A GTPase rhebl1; small GT 99.9 1.1E-24 3.8E-29 198.0 15.2 170 7-193 15-187 (201)
30 1ek0_A Protein (GTP-binding pr 99.9 2.4E-24 8.3E-29 189.9 17.0 162 15-192 2-168 (170)
31 2hup_A RAS-related protein RAB 99.9 1.8E-24 6E-29 196.6 16.0 167 11-193 24-193 (201)
32 3q72_A GTP-binding protein RAD 99.9 1.6E-24 5.5E-29 190.4 15.2 158 16-192 2-163 (166)
33 3c5c_A RAS-like protein 12; GD 99.9 2.7E-24 9.3E-29 193.1 16.9 161 14-192 19-185 (187)
34 3tw8_B RAS-related protein RAB 99.9 1.7E-24 5.8E-29 193.0 15.3 163 13-192 6-170 (181)
35 2bov_A RAla, RAS-related prote 99.9 4.8E-24 1.6E-28 194.5 18.6 167 9-192 7-176 (206)
36 2a9k_A RAS-related protein RAL 99.9 3.5E-24 1.2E-28 192.0 17.4 164 12-192 14-180 (187)
37 2j0v_A RAC-like GTP-binding pr 99.9 2.6E-24 8.8E-29 197.3 16.8 167 14-194 7-181 (212)
38 2j1l_A RHO-related GTP-binding 99.9 1.3E-24 4.5E-29 199.6 14.5 167 12-192 30-208 (214)
39 3kkq_A RAS-related protein M-R 99.9 5.7E-24 2E-28 190.2 18.3 165 11-192 13-181 (183)
40 2erx_A GTP-binding protein DI- 99.9 3.6E-24 1.2E-28 189.1 16.8 162 15-193 2-167 (172)
41 2nzj_A GTP-binding protein REM 99.9 4.6E-24 1.6E-28 189.2 17.4 160 14-192 2-168 (175)
42 1z06_A RAS-related protein RAB 99.9 3.6E-24 1.2E-28 192.6 16.6 165 11-192 15-187 (189)
43 3cbq_A GTP-binding protein REM 99.9 3E-24 1E-28 194.1 16.1 165 12-193 19-188 (195)
44 1x3s_A RAS-related protein RAB 99.9 3.5E-24 1.2E-28 193.6 16.4 165 12-194 11-179 (195)
45 2il1_A RAB12; G-protein, GDP, 99.9 2.8E-24 9.6E-29 193.9 15.6 165 12-192 22-189 (192)
46 2a5j_A RAS-related protein RAB 99.9 5.7E-24 1.9E-28 191.7 17.4 166 10-192 15-183 (191)
47 3t5g_A GTP-binding protein RHE 99.9 3.9E-24 1.4E-28 190.8 16.2 163 14-193 4-169 (181)
48 4dsu_A GTPase KRAS, isoform 2B 99.9 7.3E-24 2.5E-28 190.4 18.0 161 14-192 2-165 (189)
49 2ew1_A RAS-related protein RAB 99.9 5.1E-24 1.7E-28 193.4 17.0 163 13-192 23-188 (201)
50 1zbd_A Rabphilin-3A; G protein 99.9 6.4E-24 2.2E-28 193.3 17.6 161 14-191 6-169 (203)
51 3tkl_A RAS-related protein RAB 99.9 6.5E-24 2.2E-28 192.0 17.5 163 13-192 13-178 (196)
52 2hxs_A RAB-26, RAS-related pro 99.9 2.1E-24 7E-29 192.0 13.9 164 14-194 4-174 (178)
53 1z2a_A RAS-related protein RAB 99.9 4E-24 1.4E-28 188.1 15.6 161 14-191 3-165 (168)
54 4gzl_A RAS-related C3 botulinu 99.9 1.9E-24 6.5E-29 196.9 13.9 164 13-190 27-202 (204)
55 1z08_A RAS-related protein RAB 99.9 3.3E-24 1.1E-28 189.1 15.0 162 14-192 4-168 (170)
56 2p5s_A RAS and EF-hand domain 99.9 3.6E-24 1.2E-28 194.3 15.6 165 12-192 24-196 (199)
57 1g16_A RAS-related protein SEC 99.9 3.4E-24 1.2E-28 189.0 15.0 161 15-193 2-165 (170)
58 2ce2_X GTPase HRAS; signaling 99.9 9.1E-24 3.1E-28 185.2 17.6 161 14-192 1-164 (166)
59 3bc1_A RAS-related protein RAB 99.9 1.2E-23 4E-28 189.8 18.7 163 13-192 8-184 (195)
60 2fv8_A H6, RHO-related GTP-bin 99.9 4.1E-24 1.4E-28 195.2 15.6 167 12-192 21-199 (207)
61 2y8e_A RAB-protein 6, GH09086P 99.9 6.7E-24 2.3E-28 188.8 16.6 164 13-193 11-177 (179)
62 1wms_A RAB-9, RAB9, RAS-relate 99.9 7.3E-24 2.5E-28 188.3 16.6 163 13-192 4-173 (177)
63 2oil_A CATX-8, RAS-related pro 99.9 9.5E-24 3.3E-28 190.5 17.3 163 13-192 22-187 (193)
64 2g6b_A RAS-related protein RAB 99.9 1.3E-23 4.5E-28 187.2 17.9 165 12-193 6-174 (180)
65 2bme_A RAB4A, RAS-related prot 99.9 7.3E-24 2.5E-28 189.9 16.3 163 13-192 7-172 (186)
66 3dz8_A RAS-related protein RAB 99.9 6.6E-25 2.3E-29 197.8 9.4 162 14-192 21-185 (191)
67 3q85_A GTP-binding protein REM 99.9 6.2E-24 2.1E-28 187.2 15.4 159 16-191 2-165 (169)
68 3cph_A RAS-related protein SEC 99.9 6.3E-24 2.2E-28 194.8 15.6 167 8-192 12-181 (213)
69 1ky3_A GTP-binding protein YPT 99.9 7.6E-24 2.6E-28 189.0 15.4 165 13-192 5-177 (182)
70 2g3y_A GTP-binding protein GEM 99.9 1.2E-23 4E-28 191.8 16.7 161 13-191 34-201 (211)
71 4bas_A ADP-ribosylation factor 99.9 8.7E-24 3E-28 191.6 15.7 169 8-193 9-189 (199)
72 2fn4_A P23, RAS-related protei 99.9 2.2E-23 7.5E-28 185.8 17.8 164 12-192 5-171 (181)
73 2gf0_A GTP-binding protein DI- 99.9 9.5E-24 3.3E-28 191.4 15.6 162 14-193 6-171 (199)
74 3con_A GTPase NRAS; structural 99.9 1.4E-23 4.7E-28 188.9 16.5 162 13-192 18-182 (190)
75 3clv_A RAB5 protein, putative; 99.9 2.6E-23 8.9E-28 189.4 18.6 160 14-192 5-203 (208)
76 1upt_A ARL1, ADP-ribosylation 99.9 2.4E-23 8.3E-28 183.7 17.7 160 11-193 2-169 (171)
77 1zd9_A ADP-ribosylation factor 99.9 2E-23 6.9E-28 187.5 17.3 163 9-193 15-185 (188)
78 2bcg_Y Protein YP2, GTP-bindin 99.9 2.2E-23 7.7E-28 190.1 17.6 163 14-193 6-171 (206)
79 3gj0_A GTP-binding nuclear pro 99.9 2E-24 6.7E-29 199.5 9.9 167 8-193 7-175 (221)
80 1r8s_A ADP-ribosylation factor 99.9 4.4E-23 1.5E-27 180.8 18.0 153 17-192 1-161 (164)
81 2fu5_C RAS-related protein RAB 99.9 2.8E-24 9.5E-29 192.2 10.4 162 14-192 6-170 (183)
82 3cpj_B GTP-binding protein YPT 99.9 1.3E-23 4.5E-28 194.2 15.2 166 13-195 10-178 (223)
83 1zj6_A ADP-ribosylation factor 99.9 1.6E-23 5.5E-28 188.0 15.0 163 14-195 14-180 (187)
84 2o52_A RAS-related protein RAB 99.9 1.2E-23 3.9E-28 191.1 14.1 162 14-192 23-187 (200)
85 1vg8_A RAS-related protein RAB 99.9 1.8E-23 6.3E-28 190.8 14.3 164 13-193 5-175 (207)
86 1m2o_B GTP-binding protein SAR 99.9 5.7E-23 1.9E-27 184.9 17.3 155 13-190 20-189 (190)
87 1ksh_A ARF-like protein 2; sma 99.9 4.7E-23 1.6E-27 184.7 16.4 158 14-194 16-181 (186)
88 1f6b_A SAR1; gtpases, N-termin 99.9 4.6E-23 1.6E-27 186.8 16.4 158 14-191 23-197 (198)
89 2h17_A ADP-ribosylation factor 99.9 3.2E-23 1.1E-27 185.0 14.8 163 9-190 14-180 (181)
90 2atv_A RERG, RAS-like estrogen 99.9 6.3E-23 2.2E-27 185.6 16.8 161 14-191 26-189 (196)
91 2h57_A ADP-ribosylation factor 99.9 6.7E-23 2.3E-27 184.5 16.8 163 11-192 16-186 (190)
92 2yc2_C IFT27, small RAB-relate 99.9 7.6E-24 2.6E-28 193.4 10.5 162 14-192 18-191 (208)
93 3iev_A GTP-binding protein ERA 99.9 1.5E-22 5E-27 195.8 19.5 166 11-195 5-184 (308)
94 1fzq_A ADP-ribosylation factor 99.9 5.2E-23 1.8E-27 183.6 15.0 156 14-192 14-177 (181)
95 2b6h_A ADP-ribosylation factor 99.9 5.9E-23 2E-27 185.1 15.5 157 13-192 26-190 (192)
96 2f7s_A C25KG, RAS-related prot 99.9 1.9E-23 6.6E-28 192.2 11.8 162 14-192 23-198 (217)
97 2wji_A Ferrous iron transport 99.9 1.2E-22 4.2E-27 178.3 16.3 152 14-191 1-163 (165)
98 3llu_A RAS-related GTP-binding 99.9 6.9E-23 2.4E-27 185.3 14.9 166 8-191 12-195 (196)
99 4djt_A GTP-binding nuclear pro 99.9 1.1E-23 3.7E-28 194.1 9.0 165 13-194 8-176 (218)
100 2cjw_A GTP-binding protein GEM 99.9 1.2E-22 4.1E-27 183.0 15.3 161 14-192 4-171 (192)
101 3t1o_A Gliding protein MGLA; G 99.9 5.9E-23 2E-27 185.8 11.9 162 12-192 10-191 (198)
102 1wf3_A GTP-binding protein; GT 99.9 4.5E-22 1.6E-26 191.2 18.6 160 14-195 5-175 (301)
103 2lkc_A Translation initiation 99.9 8.4E-23 2.9E-27 181.6 12.4 164 12-192 4-170 (178)
104 3pqc_A Probable GTP-binding pr 99.9 2.7E-22 9.3E-27 181.0 16.0 166 9-193 16-194 (195)
105 2fh5_B SR-beta, signal recogni 99.9 2.8E-22 9.6E-27 184.0 16.0 120 14-134 5-130 (214)
106 1moz_A ARL1, ADP-ribosylation 99.9 1.1E-22 3.8E-27 181.7 12.6 156 14-192 16-179 (183)
107 2gj8_A MNME, tRNA modification 99.9 1.8E-22 6.1E-27 178.5 13.6 153 14-193 2-166 (172)
108 2zej_A Dardarin, leucine-rich 99.9 4.6E-23 1.6E-27 184.5 9.7 165 16-193 2-178 (184)
109 2x77_A ADP-ribosylation factor 99.9 1.4E-22 4.9E-27 182.1 12.8 157 14-193 20-184 (189)
110 3l0i_B RAS-related protein RAB 99.9 3.4E-24 1.2E-28 194.5 1.1 162 14-192 31-195 (199)
111 1svi_A GTP-binding protein YSX 99.9 6.2E-22 2.1E-26 178.8 15.9 160 13-192 20-194 (195)
112 3th5_A RAS-related C3 botulinu 99.8 3.1E-24 1.1E-28 195.6 0.0 162 14-189 28-201 (204)
113 3o47_A ADP-ribosylation factor 99.9 3.5E-22 1.2E-26 194.9 14.4 159 12-193 161-327 (329)
114 2dyk_A GTP-binding protein; GT 99.9 6.5E-22 2.2E-26 172.7 13.8 150 17-192 2-161 (161)
115 2hup_A RAS-related protein RAB 99.9 6.2E-22 2.1E-26 179.8 14.1 144 365-513 25-170 (201)
116 2ew1_A RAS-related protein RAB 99.9 1.2E-21 4E-26 177.8 15.8 142 367-513 24-166 (201)
117 3r7w_A Gtpase1, GTP-binding pr 99.9 1.1E-21 3.9E-26 189.6 16.2 161 15-191 2-179 (307)
118 1z06_A RAS-related protein RAB 99.9 2.2E-21 7.5E-26 174.3 16.8 143 367-513 18-162 (189)
119 3tw8_B RAS-related protein RAB 99.9 1.7E-21 5.8E-26 173.4 15.8 141 367-513 7-148 (181)
120 1z08_A RAS-related protein RAB 99.9 2.1E-21 7.2E-26 171.0 15.8 142 367-513 4-146 (170)
121 2gf9_A RAS-related protein RAB 99.9 1.6E-21 5.5E-26 175.2 15.0 143 366-513 19-162 (189)
122 3q3j_B RHO-related GTP-binding 99.9 1.5E-21 5.1E-26 179.1 15.0 140 367-513 25-179 (214)
123 3cbq_A GTP-binding protein REM 99.9 1.1E-21 3.8E-26 177.1 13.9 144 366-513 20-165 (195)
124 1g16_A RAS-related protein SEC 99.9 1.3E-21 4.4E-26 172.3 14.0 141 368-513 2-142 (170)
125 2qu8_A Putative nucleolar GTP- 99.9 1.9E-21 6.6E-26 180.2 15.8 163 14-192 27-204 (228)
126 1zbd_A Rabphilin-3A; G protein 99.9 4.2E-21 1.4E-25 174.5 17.5 142 367-513 6-148 (203)
127 1r2q_A RAS-related protein RAB 99.9 2.1E-21 7.2E-26 170.9 15.0 141 368-513 5-146 (170)
128 4dhe_A Probable GTP-binding pr 99.9 1.3E-21 4.5E-26 180.7 14.2 166 12-194 25-212 (223)
129 2fu5_C RAS-related protein RAB 99.9 7E-22 2.4E-26 176.5 11.8 142 367-513 6-148 (183)
130 2wkq_A NPH1-1, RAS-related C3 99.9 1E-21 3.5E-26 192.9 14.1 165 14-192 153-329 (332)
131 3oes_A GTPase rhebl1; small GT 99.9 1.8E-21 6E-26 176.8 14.4 145 364-513 19-164 (201)
132 3tkl_A RAS-related protein RAB 99.9 2.4E-21 8.3E-26 175.0 15.2 142 367-513 14-156 (196)
133 2a5j_A RAS-related protein RAB 99.9 1.8E-21 6.1E-26 175.3 14.3 143 366-513 18-161 (191)
134 3q85_A GTP-binding protein REM 99.9 2.3E-21 7.9E-26 170.7 14.7 142 369-513 2-144 (169)
135 2efe_B Small GTP-binding prote 99.9 4.2E-21 1.4E-25 171.0 16.5 142 367-513 10-152 (181)
136 3t5g_A GTP-binding protein RHE 99.9 2E-21 6.9E-26 173.2 14.5 141 368-513 5-146 (181)
137 3dz8_A RAS-related protein RAB 99.9 6.4E-22 2.2E-26 178.2 11.1 142 367-513 21-163 (191)
138 2bme_A RAB4A, RAS-related prot 99.9 3E-21 1E-25 172.9 15.1 142 367-513 8-150 (186)
139 2wjg_A FEOB, ferrous iron tran 99.9 2E-21 6.8E-26 174.3 14.0 156 13-194 4-170 (188)
140 2fg5_A RAB-22B, RAS-related pr 99.9 3.3E-21 1.1E-25 173.7 15.4 142 367-513 21-163 (192)
141 1z0f_A RAB14, member RAS oncog 99.9 4.1E-21 1.4E-25 170.7 15.6 142 367-513 13-155 (179)
142 3i8s_A Ferrous iron transport 99.9 1.1E-21 3.6E-26 186.6 12.5 155 14-194 1-170 (274)
143 2bcg_Y Protein YP2, GTP-bindin 99.9 4.3E-21 1.5E-25 174.9 16.1 142 367-513 6-148 (206)
144 3kkq_A RAS-related protein M-R 99.9 2.6E-21 8.8E-26 172.8 13.7 142 367-513 16-158 (183)
145 1z2a_A RAS-related protein RAB 99.9 2.8E-21 9.7E-26 169.8 13.7 140 368-513 4-144 (168)
146 3a1s_A Iron(II) transport prot 99.9 1.6E-21 5.5E-26 183.4 12.8 153 14-192 3-166 (258)
147 2g3y_A GTP-binding protein GEM 99.9 1E-20 3.6E-25 172.3 17.8 142 367-513 35-180 (211)
148 1z0j_A RAB-22, RAS-related pro 99.9 6.8E-21 2.3E-25 167.7 16.1 141 368-513 5-146 (170)
149 3c5c_A RAS-like protein 12; GD 99.9 3E-21 1E-25 173.2 13.9 143 367-513 19-162 (187)
150 1ek0_A Protein (GTP-binding pr 99.9 4.9E-21 1.7E-25 168.5 15.1 140 369-513 3-146 (170)
151 2o52_A RAS-related protein RAB 99.9 2.6E-21 8.8E-26 175.6 13.6 142 367-513 23-165 (200)
152 2nzj_A GTP-binding protein REM 99.9 7.5E-21 2.6E-25 168.3 16.3 141 368-513 3-146 (175)
153 2oil_A CATX-8, RAS-related pro 99.9 3.5E-21 1.2E-25 173.6 14.2 143 366-513 22-165 (193)
154 3lvq_E ARF-GAP with SH3 domain 99.9 5.9E-21 2E-25 197.8 17.9 159 14-194 320-485 (497)
155 2il1_A RAB12; G-protein, GDP, 99.9 3.3E-21 1.1E-25 173.6 13.7 143 366-513 23-167 (192)
156 3cpj_B GTP-binding protein YPT 99.9 3.5E-21 1.2E-25 177.9 14.1 142 367-513 11-153 (223)
157 3clv_A RAB5 protein, putative; 99.9 8.3E-21 2.8E-25 172.7 16.4 141 366-513 4-181 (208)
158 2g6b_A RAS-related protein RAB 99.9 1.1E-20 3.9E-25 168.0 16.6 142 367-513 8-151 (180)
159 3iby_A Ferrous iron transport 99.9 2.9E-21 1E-25 181.3 12.7 148 17-190 2-164 (256)
160 1x3s_A RAS-related protein RAB 99.9 6.7E-21 2.3E-25 171.9 14.6 142 368-513 14-155 (195)
161 3c5h_A Glucocorticoid receptor 99.9 2.8E-21 9.6E-26 181.9 12.4 163 11-191 14-253 (255)
162 3b1v_A Ferrous iron uptake tra 99.9 3.7E-21 1.3E-25 181.9 13.2 151 16-193 3-164 (272)
163 3q72_A GTP-binding protein RAD 99.9 8.9E-21 3E-25 166.4 14.8 139 369-513 2-141 (166)
164 3bc1_A RAS-related protein RAB 99.8 1.8E-20 6.3E-25 168.8 17.1 143 367-513 9-162 (195)
165 1m7b_A RND3/RHOE small GTP-bin 99.8 1.1E-20 3.6E-25 169.1 15.3 140 367-513 5-159 (184)
166 3cph_A RAS-related protein SEC 99.8 8.5E-21 2.9E-25 173.8 14.9 142 367-513 18-159 (213)
167 2y8e_A RAB-protein 6, GH09086P 99.8 6.5E-21 2.2E-25 169.3 13.5 141 368-513 13-154 (179)
168 2p5s_A RAS and EF-hand domain 99.8 4.5E-21 1.5E-25 173.8 12.1 143 366-513 25-174 (199)
169 2yc2_C IFT27, small RAB-relate 99.8 9.1E-21 3.1E-25 172.9 14.1 145 367-513 18-168 (208)
170 3ihw_A Centg3; RAS, centaurin, 99.8 1.4E-20 4.9E-25 168.2 14.9 138 365-513 16-157 (184)
171 1wms_A RAB-9, RAB9, RAS-relate 99.8 1.7E-20 5.9E-25 166.4 15.1 145 367-513 5-151 (177)
172 1kao_A RAP2A; GTP-binding prot 99.8 1.4E-20 4.7E-25 165.1 14.2 140 369-513 3-143 (167)
173 2iwr_A Centaurin gamma 1; ANK 99.8 1E-20 3.5E-25 168.1 13.4 138 367-513 5-146 (178)
174 2hxs_A RAB-26, RAS-related pro 99.8 4.7E-21 1.6E-25 170.2 10.7 144 367-513 4-150 (178)
175 1c1y_A RAS-related protein RAP 99.8 1.5E-20 5.1E-25 165.0 13.8 140 369-513 3-144 (167)
176 3reg_A RHO-like small GTPase; 99.8 2.1E-20 7.3E-25 168.6 15.2 141 366-513 20-165 (194)
177 1gwn_A RHO-related GTP-binding 99.8 2.3E-20 7.9E-25 169.8 15.3 140 367-513 26-180 (205)
178 2f7s_A C25KG, RAS-related prot 99.8 9.7E-21 3.3E-25 174.1 12.8 144 366-513 22-176 (217)
179 2hjg_A GTP-binding protein ENG 99.8 4.9E-21 1.7E-25 194.4 11.4 160 14-192 173-348 (436)
180 1u8z_A RAS-related protein RAL 99.8 2.7E-20 9.1E-25 163.4 14.5 141 368-513 3-144 (168)
181 2fn4_A P23, RAS-related protei 99.8 1.7E-20 5.9E-25 166.9 13.2 142 367-513 7-149 (181)
182 4dsu_A GTPase KRAS, isoform 2B 99.8 3.3E-20 1.1E-24 166.4 15.1 141 368-513 3-143 (189)
183 1vg8_A RAS-related protein RAB 99.8 3.5E-20 1.2E-24 168.9 15.5 145 367-513 6-152 (207)
184 3dpu_A RAB family protein; roc 99.8 3.5E-20 1.2E-24 193.2 17.5 163 12-194 37-209 (535)
185 2cxx_A Probable GTP-binding pr 99.8 1.6E-20 5.5E-25 168.6 12.9 155 17-193 2-184 (190)
186 3l0i_B RAS-related protein RAB 99.8 1E-21 3.6E-26 178.0 5.1 142 367-513 31-173 (199)
187 2bov_A RAla, RAS-related prote 99.8 4.1E-20 1.4E-24 168.2 15.5 143 366-513 11-154 (206)
188 1ky3_A GTP-binding protein YPT 99.8 5.9E-20 2E-24 163.6 15.9 145 367-513 6-155 (182)
189 2atx_A Small GTP binding prote 99.8 4.7E-20 1.6E-24 166.3 15.3 140 367-513 16-170 (194)
190 1nrj_B SR-beta, signal recogni 99.8 3E-20 1E-24 170.9 13.9 148 13-167 9-170 (218)
191 2f9l_A RAB11B, member RAS onco 99.8 9.7E-20 3.3E-24 165.0 17.0 162 14-192 3-167 (199)
192 2atv_A RERG, RAS-like estrogen 99.8 2.5E-20 8.7E-25 168.4 12.7 141 367-513 26-167 (196)
193 2a9k_A RAS-related protein RAL 99.8 5.1E-20 1.8E-24 164.7 14.2 141 368-513 17-158 (187)
194 2j0v_A RAC-like GTP-binding pr 99.8 3.8E-20 1.3E-24 169.4 13.0 141 366-513 6-157 (212)
195 2cjw_A GTP-binding protein GEM 99.8 8.5E-20 2.9E-24 164.3 15.0 142 367-513 4-149 (192)
196 3k53_A Ferrous iron transport 99.8 2.4E-20 8.1E-25 177.4 11.9 155 14-194 1-167 (271)
197 3con_A GTPase NRAS; structural 99.8 1.8E-19 6E-24 161.9 16.4 141 368-513 20-160 (190)
198 1oix_A RAS-related protein RAB 99.8 1.9E-19 6.6E-24 161.8 16.6 161 14-191 27-190 (191)
199 4dcu_A GTP-binding protein ENG 99.8 4.9E-20 1.7E-24 188.1 14.1 162 13-193 192-369 (456)
200 2j1l_A RHO-related GTP-binding 99.8 9.3E-20 3.2E-24 167.1 14.3 139 368-513 33-186 (214)
201 2erx_A GTP-binding protein DI- 99.8 7.6E-20 2.6E-24 161.2 13.2 141 369-513 3-144 (172)
202 2q3h_A RAS homolog gene family 99.8 8.5E-20 2.9E-24 165.6 13.9 141 366-513 17-172 (201)
203 3r7w_B Gtpase2, GTP-binding pr 99.8 2.2E-20 7.6E-25 178.0 10.2 158 18-192 1-173 (331)
204 2gco_A H9, RHO-related GTP-bin 99.8 1.3E-19 4.5E-24 164.3 14.9 140 367-513 23-177 (201)
205 4djt_A GTP-binding nuclear pro 99.8 4.6E-20 1.6E-24 169.6 11.6 142 367-513 9-152 (218)
206 2ce2_X GTPase HRAS; signaling 99.8 1.4E-19 4.9E-24 158.3 13.7 140 369-513 3-142 (166)
207 3gj0_A GTP-binding nuclear pro 99.8 2.2E-20 7.5E-25 172.2 8.5 140 367-513 13-152 (221)
208 1mh1_A RAC1; GTP-binding, GTPa 99.8 2.2E-19 7.7E-24 160.4 14.1 139 368-513 4-157 (186)
209 2gf0_A GTP-binding protein DI- 99.8 1.2E-19 4.1E-24 164.2 12.4 143 367-513 6-148 (199)
210 1ega_A Protein (GTP-binding pr 99.8 7.2E-20 2.5E-24 176.2 11.4 158 15-194 7-176 (301)
211 4gzl_A RAS-related C3 botulinu 99.8 2E-19 6.9E-24 163.5 13.5 138 367-511 28-179 (204)
212 3bwd_D RAC-like GTP-binding pr 99.8 3.1E-20 1E-24 165.5 7.8 140 367-513 6-158 (182)
213 1mky_A Probable GTP-binding pr 99.8 3.2E-19 1.1E-23 181.2 16.0 160 15-193 179-355 (439)
214 2fv8_A H6, RHO-related GTP-bin 99.8 2.6E-19 8.8E-24 163.2 13.6 139 368-513 24-177 (207)
215 2zej_A Dardarin, leucine-rich 99.8 5.9E-20 2E-24 164.2 8.5 136 370-511 3-148 (184)
216 1wb1_A Translation elongation 99.8 4.1E-19 1.4E-23 181.6 15.4 167 10-192 13-188 (482)
217 1zd9_A ADP-ribosylation factor 99.8 1E-18 3.6E-23 156.6 16.2 121 366-494 19-139 (188)
218 3sjy_A Translation initiation 99.8 1.2E-18 4E-23 175.0 17.7 166 12-194 4-193 (403)
219 4bas_A ADP-ribosylation factor 99.8 1E-18 3.4E-23 158.1 15.7 123 366-494 14-142 (199)
220 1lnz_A SPO0B-associated GTP-bi 99.8 1.3E-19 4.4E-24 176.4 10.0 155 18-194 160-331 (342)
221 2h57_A ADP-ribosylation factor 99.8 2E-18 6.7E-23 155.1 15.9 132 367-505 19-151 (190)
222 2f9l_A RAB11B, member RAS onco 99.8 1.4E-18 4.6E-23 157.4 14.8 141 368-513 4-145 (199)
223 3qq5_A Small GTP-binding prote 99.8 4.9E-20 1.7E-24 184.0 4.7 156 13-194 31-197 (423)
224 1ksh_A ARF-like protein 2; sma 99.8 5.9E-18 2E-22 151.3 17.7 118 368-494 17-134 (186)
225 3t1o_A Gliding protein MGLA; G 99.8 1.4E-19 4.8E-24 163.5 6.9 139 367-513 12-169 (198)
226 1f6b_A SAR1; gtpases, N-termin 99.8 2.4E-18 8.3E-23 155.6 14.4 129 368-506 24-152 (198)
227 3r7w_A Gtpase1, GTP-binding pr 99.8 1.3E-18 4.4E-23 168.1 13.3 142 368-513 2-159 (307)
228 1r8s_A ADP-ribosylation factor 99.8 2.4E-18 8.1E-23 150.5 13.7 116 370-494 1-116 (164)
229 2h17_A ADP-ribosylation factor 99.8 2.8E-18 9.6E-23 152.8 14.0 119 366-493 18-136 (181)
230 3j2k_7 ERF3, eukaryotic polype 99.8 3.7E-18 1.3E-22 172.7 16.4 154 11-168 12-212 (439)
231 1upt_A ARL1, ADP-ribosylation 99.8 7.2E-18 2.5E-22 148.4 16.2 118 368-494 6-123 (171)
232 3lxw_A GTPase IMAP family memb 99.8 3.7E-18 1.3E-22 159.6 15.0 163 14-193 19-208 (247)
233 2xtp_A GTPase IMAP family memb 99.8 1.7E-18 5.9E-23 163.6 12.5 164 12-194 18-209 (260)
234 1fzq_A ADP-ribosylation factor 99.8 3E-18 1E-22 152.6 13.3 119 367-494 14-132 (181)
235 1oix_A RAS-related protein RAB 99.8 2.7E-18 9.4E-23 154.3 13.0 142 367-513 27-169 (191)
236 1m2o_B GTP-binding protein SAR 99.8 5.1E-18 1.7E-22 152.4 14.6 126 369-504 23-148 (190)
237 2e87_A Hypothetical protein PH 99.8 5.7E-18 2E-22 167.3 15.9 157 14-192 165-335 (357)
238 1zj6_A ADP-ribosylation factor 99.8 2.6E-18 8.9E-23 153.9 12.1 118 367-493 14-131 (187)
239 2ged_A SR-beta, signal recogni 99.8 2E-18 6.8E-23 155.4 11.1 116 14-134 46-171 (193)
240 2c78_A Elongation factor TU-A; 99.8 5.9E-18 2E-22 170.1 15.6 178 13-194 8-213 (405)
241 2b6h_A ADP-ribosylation factor 99.8 3.9E-18 1.3E-22 153.4 12.8 119 367-494 27-145 (192)
242 2qtf_A Protein HFLX, GTP-bindi 99.8 6.4E-18 2.2E-22 166.1 15.1 166 11-193 173-354 (364)
243 1s0u_A EIF-2-gamma, translatio 99.8 1.1E-17 3.7E-22 168.3 16.2 166 14-194 6-199 (408)
244 3th5_A RAS-related C3 botulinu 99.6 6.9E-20 2.4E-24 166.6 0.0 140 367-513 28-182 (204)
245 3izy_P Translation initiation 99.7 1.1E-19 3.7E-24 186.1 1.1 158 15-192 3-167 (537)
246 1kk1_A EIF2gamma; initiation o 99.7 2.4E-17 8.2E-22 166.0 17.9 168 12-194 6-201 (410)
247 3lxx_A GTPase IMAP family memb 99.7 1.7E-17 5.9E-22 154.6 15.5 169 12-193 25-214 (239)
248 2x77_A ADP-ribosylation factor 99.7 1E-17 3.6E-22 150.2 13.5 118 368-494 21-138 (189)
249 1zun_B Sulfate adenylate trans 99.7 2E-17 7E-22 167.6 16.6 155 14-172 22-216 (434)
250 3llu_A RAS-related GTP-binding 99.7 3.7E-18 1.3E-22 154.1 9.9 141 366-513 17-175 (196)
251 3p26_A Elongation factor 1 alp 99.7 1.1E-17 3.8E-22 171.7 14.5 153 14-168 31-225 (483)
252 1moz_A ARL1, ADP-ribosylation 99.7 1.6E-17 5.4E-22 148.0 12.9 118 367-493 16-133 (183)
253 1d2e_A Elongation factor TU (E 99.7 8.3E-18 2.8E-22 168.4 12.0 173 15-194 2-196 (397)
254 3tr5_A RF-3, peptide chain rel 99.7 1.3E-17 4.3E-22 171.7 13.6 116 15-134 12-149 (528)
255 3t5d_A Septin-7; GTP-binding p 99.7 1.5E-17 5.2E-22 158.2 13.1 161 16-195 8-206 (274)
256 2wji_A Ferrous iron transport 99.7 1E-17 3.6E-22 146.7 10.9 132 369-513 3-142 (165)
257 2fh5_B SR-beta, signal recogni 99.7 3.8E-17 1.3E-21 149.6 13.9 123 368-495 6-131 (214)
258 2wkq_A NPH1-1, RAS-related C3 99.7 2.8E-17 9.6E-22 161.1 13.5 140 367-513 153-307 (332)
259 1pui_A ENGB, probable GTP-bind 99.7 3E-17 1E-21 149.7 12.7 165 12-194 22-200 (210)
260 3cb4_D GTP-binding protein LEP 99.7 5E-17 1.7E-21 169.0 15.7 161 15-195 3-184 (599)
261 3r7w_B Gtpase2, GTP-binding pr 99.7 5E-18 1.7E-22 161.8 7.2 134 371-513 1-152 (331)
262 1u0l_A Probable GTPase ENGC; p 99.7 7.9E-18 2.7E-22 161.9 8.3 133 31-186 32-166 (301)
263 2elf_A Protein translation elo 99.7 2.9E-17 9.8E-22 162.0 12.4 147 18-193 23-180 (370)
264 2ywe_A GTP-binding protein LEP 99.7 8.2E-17 2.8E-21 167.0 16.3 162 14-195 4-186 (600)
265 3c5h_A Glucocorticoid receptor 99.7 2.5E-18 8.5E-23 161.7 4.4 143 366-513 16-232 (255)
266 3izq_1 HBS1P, elongation facto 99.7 2.2E-17 7.4E-22 173.1 11.9 150 14-168 165-359 (611)
267 2aka_B Dynamin-1; fusion prote 99.7 8.1E-18 2.8E-22 162.5 8.0 157 14-190 24-250 (299)
268 1g7s_A Translation initiation 99.7 2.7E-17 9.4E-22 171.2 12.4 163 14-192 3-217 (594)
269 1zo1_I IF2, translation initia 99.7 1.8E-18 6E-23 175.6 2.5 157 15-190 3-164 (501)
270 3avx_A Elongation factor TS, e 99.7 8.6E-17 2.9E-21 174.2 15.6 174 12-193 292-486 (1289)
271 2j69_A Bacterial dynamin-like 99.7 9.2E-17 3.1E-21 171.2 15.7 163 14-193 67-325 (695)
272 3h2y_A GTPase family protein; 99.7 6E-17 2.1E-21 159.7 11.9 100 72-189 55-156 (368)
273 3def_A T7I23.11 protein; chlor 99.7 1.3E-16 4.6E-21 150.6 13.4 118 14-134 34-166 (262)
274 3iev_A GTP-binding protein ERA 99.7 1.9E-16 6.4E-21 152.9 14.1 135 367-509 8-153 (308)
275 1f60_A Elongation factor EEF1A 99.7 2.1E-16 7.2E-21 160.8 15.0 151 14-168 5-199 (458)
276 1jwy_B Dynamin A GTPase domain 99.7 1.2E-16 4.3E-21 155.3 12.8 168 14-195 22-264 (315)
277 3mca_A HBS1, elongation factor 99.7 6.4E-18 2.2E-22 176.6 3.7 153 13-168 174-370 (592)
278 3o47_A ADP-ribosylation factor 99.7 8.3E-17 2.8E-21 156.8 10.8 119 367-494 163-281 (329)
279 3ec1_A YQEH GTPase; atnos1, at 99.7 1.3E-16 4.5E-21 157.5 12.1 100 72-189 57-158 (369)
280 3lvq_E ARF-GAP with SH3 domain 99.7 2.9E-16 9.8E-21 162.5 15.2 118 367-493 320-437 (497)
281 1jny_A EF-1-alpha, elongation 99.7 1.5E-16 5.1E-21 161.1 12.2 156 14-172 4-205 (435)
282 2wjg_A FEOB, ferrous iron tran 99.7 8.7E-17 3E-21 143.9 9.2 133 368-513 6-146 (188)
283 1h65_A Chloroplast outer envel 99.7 5E-16 1.7E-20 147.4 14.5 118 14-134 37-169 (270)
284 2qu8_A Putative nucleolar GTP- 99.7 4E-16 1.4E-20 144.3 13.2 138 367-513 27-182 (228)
285 1nrj_B SR-beta, signal recogni 99.7 4.1E-17 1.4E-21 149.8 6.4 135 367-512 10-160 (218)
286 2www_A Methylmalonic aciduria 99.7 1.6E-17 5.4E-22 163.0 3.6 220 14-270 72-348 (349)
287 2ged_A SR-beta, signal recogni 99.7 3.6E-17 1.2E-21 147.1 5.3 129 367-506 46-183 (193)
288 3i8s_A Ferrous iron transport 99.7 1E-16 3.5E-21 152.1 8.3 134 369-513 3-146 (274)
289 2dyk_A GTP-binding protein; GT 99.7 2E-16 6.9E-21 137.6 9.5 126 370-510 2-135 (161)
290 3iby_A Ferrous iron transport 99.7 6.7E-17 2.3E-21 151.5 6.6 131 370-513 2-144 (256)
291 2cxx_A Probable GTP-binding pr 99.7 2.4E-16 8.3E-21 141.1 9.8 131 370-512 2-153 (190)
292 2h5e_A Peptide chain release f 99.7 1.7E-15 5.8E-20 156.1 17.3 117 14-134 11-149 (529)
293 2lkc_A Translation initiation 99.7 3.2E-16 1.1E-20 138.8 10.0 113 367-493 6-121 (178)
294 3a1s_A Iron(II) transport prot 99.6 1.9E-16 6.5E-21 148.7 8.9 135 368-513 4-144 (258)
295 1r5b_A Eukaryotic peptide chai 99.6 3.7E-16 1.3E-20 159.4 11.6 155 14-171 41-243 (467)
296 1wxq_A GTP-binding protein; st 99.6 7.8E-17 2.7E-21 160.2 6.2 80 17-99 1-114 (397)
297 3b1v_A Ferrous iron uptake tra 99.6 1.8E-16 6.2E-21 149.7 7.4 131 369-513 3-141 (272)
298 1svi_A GTP-binding protein YSX 99.6 7.8E-16 2.7E-20 138.5 10.9 117 367-495 21-150 (195)
299 2gj8_A MNME, tRNA modification 99.6 4.9E-16 1.7E-20 137.0 9.2 119 369-493 4-129 (172)
300 1wf3_A GTP-binding protein; GT 99.6 1.1E-15 3.8E-20 146.6 11.5 116 370-494 8-132 (301)
301 2qag_A Septin-2, protein NEDD5 99.6 1.5E-16 5.3E-21 156.7 5.0 164 16-194 37-238 (361)
302 2dy1_A Elongation factor G; tr 99.6 7.6E-15 2.6E-19 155.8 18.3 116 13-132 6-139 (665)
303 2xex_A Elongation factor G; GT 99.6 5.6E-15 1.9E-19 157.4 17.0 118 13-134 7-142 (693)
304 1dar_A EF-G, elongation factor 99.6 5.9E-15 2E-19 157.2 16.8 118 13-134 9-144 (691)
305 3dpu_A RAB family protein; roc 99.6 7.1E-16 2.4E-20 160.7 8.4 139 366-513 38-185 (535)
306 2qpt_A EH domain-containing pr 99.6 2.7E-15 9.1E-20 155.5 12.6 119 13-134 62-233 (550)
307 3k53_A Ferrous iron transport 99.6 1.4E-15 4.6E-20 144.4 8.2 133 369-513 3-143 (271)
308 3lxx_A GTPase IMAP family memb 99.6 7.8E-15 2.7E-19 136.6 12.5 137 367-512 27-185 (239)
309 1puj_A YLQF, conserved hypothe 99.6 1.2E-14 4.3E-19 137.7 13.7 100 67-191 3-104 (282)
310 3gee_A MNME, tRNA modification 99.6 4.7E-15 1.6E-19 150.6 11.2 121 368-495 232-359 (476)
311 3pqc_A Probable GTP-binding pr 99.6 7.9E-15 2.7E-19 131.7 11.4 131 367-512 21-170 (195)
312 3t34_A Dynamin-related protein 99.6 2.3E-15 8E-20 148.8 8.5 144 16-166 34-246 (360)
313 2rdo_7 EF-G, elongation factor 99.6 3.6E-14 1.2E-18 151.3 17.7 118 13-134 7-149 (704)
314 4dhe_A Probable GTP-binding pr 99.6 5.1E-15 1.7E-19 136.2 9.7 119 367-495 27-160 (223)
315 2x2e_A Dynamin-1; nitration, h 99.6 1.5E-15 5.2E-20 149.7 5.9 154 15-189 30-254 (353)
316 1lnz_A SPO0B-associated GTP-bi 99.6 6.7E-15 2.3E-19 143.1 10.0 135 370-509 159-301 (342)
317 1ega_A Protein (GTP-binding pr 99.5 1.5E-14 5.1E-19 139.0 11.3 132 370-510 9-148 (301)
318 3p32_A Probable GTPase RV1496/ 99.5 8.1E-15 2.8E-19 144.4 8.2 107 61-193 170-284 (355)
319 1udx_A The GTP-binding protein 99.5 9.4E-14 3.2E-18 138.1 15.6 154 17-194 158-326 (416)
320 2yv5_A YJEQ protein; hydrolase 99.5 5.7E-14 2E-18 134.8 12.0 108 61-186 48-162 (302)
321 3vqt_A RF-3, peptide chain rel 99.5 2.6E-13 8.8E-18 140.4 17.3 115 16-134 31-167 (548)
322 2p67_A LAO/AO transport system 99.5 1.4E-14 4.7E-19 141.8 7.1 151 14-192 54-260 (341)
323 3qq5_A Small GTP-binding prote 99.5 8.7E-15 3E-19 146.1 5.4 136 367-513 32-173 (423)
324 3lxw_A GTPase IMAP family memb 99.5 5.5E-14 1.9E-18 131.2 9.8 141 367-512 19-179 (247)
325 1jal_A YCHF protein; nucleotid 99.5 6.8E-13 2.3E-17 129.0 17.2 80 16-98 2-108 (363)
326 2e87_A Hypothetical protein PH 99.5 5.2E-13 1.8E-17 131.7 16.0 140 367-513 165-313 (357)
327 3zvr_A Dynamin-1; hydrolase, D 99.5 4.1E-14 1.4E-18 149.4 8.2 152 15-189 50-274 (772)
328 2qag_C Septin-7; cell cycle, c 99.5 6.4E-14 2.2E-18 139.5 9.1 162 15-193 30-227 (418)
329 4fid_A G protein alpha subunit 99.5 5.4E-13 1.9E-17 128.5 14.9 75 59-134 157-243 (340)
330 1xzp_A Probable tRNA modificat 99.5 2.6E-14 8.9E-19 145.2 6.0 115 368-493 242-364 (482)
331 2dby_A GTP-binding protein; GD 99.5 4E-13 1.4E-17 131.5 13.7 79 17-98 2-111 (368)
332 2qtf_A Protein HFLX, GTP-bindi 99.5 6E-13 2.1E-17 130.7 14.9 116 371-494 181-307 (364)
333 2qnr_A Septin-2, protein NEDD5 99.4 1.3E-13 4.4E-18 132.3 8.8 147 15-168 17-201 (301)
334 3ohm_A Guanine nucleotide-bind 99.4 9.9E-13 3.4E-17 126.2 14.6 118 60-191 164-316 (327)
335 1h65_A Chloroplast outer envel 99.4 5.3E-13 1.8E-17 126.5 12.5 125 367-494 37-169 (270)
336 1n0u_A EF-2, elongation factor 99.4 2.5E-13 8.4E-18 147.7 11.4 116 14-133 17-164 (842)
337 2xtp_A GTPase IMAP family memb 99.4 8E-13 2.7E-17 124.6 13.2 122 367-494 20-154 (260)
338 3def_A T7I23.11 protein; chlor 99.4 2.6E-13 9E-18 127.9 9.5 122 368-493 35-165 (262)
339 3sjy_A Translation initiation 99.4 2.1E-13 7.1E-18 136.8 8.8 122 367-495 6-145 (403)
340 3geh_A MNME, tRNA modification 99.4 1.1E-13 3.6E-18 140.1 6.5 116 368-494 223-345 (462)
341 3t5d_A Septin-7; GTP-binding p 99.4 2.1E-12 7.1E-17 122.6 13.6 138 368-513 7-181 (274)
342 3j2k_7 ERF3, eukaryotic polype 99.4 1.5E-12 5.2E-17 131.6 13.1 134 367-510 15-193 (439)
343 1yrb_A ATP(GTP)binding protein 99.4 5.4E-13 1.9E-17 125.9 9.1 165 14-194 12-258 (262)
344 4a9a_A Ribosome-interacting GT 99.4 3.1E-13 1E-17 132.2 7.5 111 17-133 73-196 (376)
345 3p26_A Elongation factor 1 alp 99.4 5.2E-13 1.8E-17 137.0 9.3 119 367-493 31-185 (483)
346 3cnl_A YLQF, putative uncharac 99.4 3E-13 1E-17 126.8 5.5 89 71-186 5-94 (262)
347 2qag_A Septin-2, protein NEDD5 99.4 1.8E-13 6.3E-18 134.7 4.3 140 367-513 35-211 (361)
348 2qm8_A GTPase/ATPase; G protei 99.4 2.1E-12 7.2E-17 125.7 10.7 152 14-192 53-260 (337)
349 3j25_A Tetracycline resistance 99.3 9.2E-13 3.2E-17 139.2 8.4 113 18-134 4-134 (638)
350 3izy_P Translation initiation 99.3 4.5E-14 1.5E-18 144.6 -2.0 116 369-494 4-119 (537)
351 1jny_A EF-1-alpha, elongation 99.3 1.4E-12 4.7E-17 132.0 8.5 133 367-509 4-181 (435)
352 1d2e_A Elongation factor TU (E 99.3 3.3E-12 1.1E-16 127.7 10.9 133 369-510 3-154 (397)
353 2c78_A Elongation factor TU-A; 99.3 1.4E-12 4.6E-17 131.0 7.9 134 367-509 9-162 (405)
354 1zun_B Sulfate adenylate trans 99.3 3.8E-12 1.3E-16 128.8 11.1 133 367-509 22-192 (434)
355 1s0u_A EIF-2-gamma, translatio 99.3 1.3E-11 4.3E-16 124.0 14.7 129 368-507 7-166 (408)
356 1kk1_A EIF2gamma; initiation o 99.3 7.9E-12 2.7E-16 125.6 12.9 130 367-507 8-168 (410)
357 2aka_B Dynamin-1; fusion prote 99.3 4.3E-12 1.5E-16 122.1 10.1 119 368-495 25-208 (299)
358 2wsm_A Hydrogenase expression/ 99.3 2.9E-12 9.8E-17 117.5 8.3 153 16-193 30-214 (221)
359 3izq_1 HBS1P, elongation facto 99.3 6.4E-12 2.2E-16 131.7 12.0 135 367-510 165-341 (611)
360 1wb1_A Translation elongation 99.3 4.2E-12 1.5E-16 129.7 10.3 127 368-508 18-157 (482)
361 3tr5_A RF-3, peptide chain rel 99.3 1.1E-12 3.6E-17 135.1 5.5 130 369-510 13-164 (528)
362 3cb4_D GTP-binding protein LEP 99.3 4.7E-12 1.6E-16 131.7 10.2 133 368-510 3-153 (599)
363 4fid_A G protein alpha subunit 99.3 2E-11 6.8E-16 117.6 12.4 76 416-495 159-244 (340)
364 2qpt_A EH domain-containing pr 99.3 4.8E-12 1.7E-16 131.1 8.6 118 368-495 64-234 (550)
365 1f60_A Elongation factor EEF1A 99.3 6.9E-12 2.3E-16 127.5 9.6 133 368-510 6-181 (458)
366 2ywe_A GTP-binding protein LEP 99.3 2.3E-11 7.7E-16 126.3 13.4 133 368-510 5-155 (600)
367 2j69_A Bacterial dynamin-like 99.3 1.6E-11 5.6E-16 130.8 12.5 122 367-494 67-245 (695)
368 3ohm_A Guanine nucleotide-bind 99.3 2E-11 6.9E-16 117.1 11.8 76 416-495 165-250 (327)
369 1wxq_A GTP-binding protein; st 99.3 1.6E-11 5.6E-16 121.8 11.2 87 370-456 1-114 (397)
370 3t34_A Dynamin-related protein 99.2 5.5E-12 1.9E-16 124.6 7.1 118 370-495 35-219 (360)
371 2h5e_A Peptide chain release f 99.2 8.9E-12 3E-16 128.4 8.7 133 368-510 12-164 (529)
372 1pui_A ENGB, probable GTP-bind 99.2 1.7E-11 5.7E-16 111.4 9.2 131 367-509 24-170 (210)
373 1jwy_B Dynamin A GTPase domain 99.2 1.1E-11 3.8E-16 120.2 8.4 119 368-495 23-214 (315)
374 1r5b_A Eukaryotic peptide chai 99.2 8.1E-12 2.8E-16 127.3 7.7 133 367-508 41-217 (467)
375 1cip_A Protein (guanine nucleo 99.2 1.9E-11 6.6E-16 119.2 9.8 121 58-191 188-342 (353)
376 4fn5_A EF-G 1, elongation fact 99.2 1.9E-10 6.5E-15 123.2 18.1 116 15-134 12-152 (709)
377 2xtz_A Guanine nucleotide-bind 99.2 2.3E-11 7.8E-16 118.6 10.0 73 61-134 181-265 (354)
378 2qag_C Septin-7; cell cycle, c 99.2 4E-11 1.4E-15 119.3 11.5 141 366-513 28-204 (418)
379 3avx_A Elongation factor TS, e 99.2 2.4E-11 8.4E-16 132.0 10.2 135 367-510 294-447 (1289)
380 1zo1_I IF2, translation initia 99.2 2.4E-12 8.2E-17 130.7 2.1 114 369-493 4-117 (501)
381 1g7s_A Translation initiation 99.2 1.3E-11 4.5E-16 128.5 6.7 113 369-493 5-136 (594)
382 2elf_A Protein translation elo 99.2 1.8E-11 6.3E-16 120.5 7.2 118 371-509 23-145 (370)
383 2hf9_A Probable hydrogenase ni 99.2 3E-11 1E-15 111.1 7.9 153 15-192 37-223 (226)
384 1zcb_A G alpha I/13; GTP-bindi 99.2 5.4E-11 1.9E-15 116.4 10.0 121 58-191 196-351 (362)
385 1jal_A YCHF protein; nucleotid 99.2 1E-10 3.5E-15 113.6 11.1 86 370-455 3-108 (363)
386 1azs_C GS-alpha; complex (lyas 99.2 8.4E-11 2.9E-15 115.9 10.6 73 61-134 215-299 (402)
387 3mca_A HBS1, elongation factor 99.2 2.4E-12 8.1E-17 134.6 -0.7 119 366-493 174-329 (592)
388 4a9a_A Ribosome-interacting GT 99.1 1.6E-10 5.6E-15 112.9 11.0 117 368-492 71-195 (376)
389 1dar_A EF-G, elongation factor 99.1 6.5E-11 2.2E-15 126.1 8.7 130 368-509 11-158 (691)
390 1n0u_A EF-2, elongation factor 99.1 6.7E-11 2.3E-15 128.6 8.4 118 367-493 17-164 (842)
391 2ohf_A Protein OLA1, GTP-bindi 99.1 6.6E-11 2.3E-15 116.1 6.7 88 13-103 19-133 (396)
392 2xex_A Elongation factor G; GT 99.1 7.4E-11 2.5E-15 125.7 7.7 117 367-494 8-142 (693)
393 2rdo_7 EF-G, elongation factor 99.1 4.4E-10 1.5E-14 119.8 13.2 118 368-494 9-149 (704)
394 1udx_A The GTP-binding protein 99.1 3.4E-10 1.2E-14 112.6 11.5 138 371-512 159-301 (416)
395 2dy1_A Elongation factor G; tr 99.1 2.5E-10 8.4E-15 121.2 10.9 131 368-509 8-154 (665)
396 3ec1_A YQEH GTPase; atnos1, at 99.1 9.3E-12 3.2E-16 122.8 -1.3 139 16-166 162-316 (369)
397 2x2e_A Dynamin-1; nitration, h 99.1 5E-10 1.7E-14 110.1 10.6 27 369-395 31-57 (353)
398 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 1.2E-09 4.2E-14 107.5 13.1 84 13-98 17-127 (392)
399 2qnr_A Septin-2, protein NEDD5 99.0 1.8E-10 6.3E-15 110.3 6.0 139 367-513 16-192 (301)
400 3h2y_A GTPase family protein; 99.0 4.8E-12 1.6E-16 124.7 -6.0 140 16-165 160-314 (368)
401 1tq4_A IIGP1, interferon-induc 99.0 4.4E-08 1.5E-12 97.1 22.4 162 16-195 69-255 (413)
402 1u0l_A Probable GTPase ENGC; p 99.0 1.3E-10 4.4E-15 111.5 3.6 115 384-513 32-150 (301)
403 1t9h_A YLOQ, probable GTPase E 99.0 1.2E-10 4.1E-15 110.8 3.2 82 80-166 80-162 (307)
404 2dby_A GTP-binding protein; GD 99.0 7.8E-10 2.7E-14 108.2 8.8 86 370-455 2-111 (368)
405 2rcn_A Probable GTPase ENGC; Y 98.9 6.1E-09 2.1E-13 101.0 13.1 76 83-166 127-204 (358)
406 1cip_A Protein (guanine nucleo 98.9 2.8E-09 9.6E-14 103.9 9.5 99 400-506 179-303 (353)
407 2qag_B Septin-6, protein NEDD5 98.9 4.8E-09 1.6E-13 103.8 10.4 113 17-134 43-191 (427)
408 2j37_W Signal recognition part 98.9 4.7E-09 1.6E-13 106.7 10.0 114 14-134 99-255 (504)
409 1azs_C GS-alpha; complex (lyas 98.9 1.2E-08 3.9E-13 100.6 11.6 81 409-495 210-300 (402)
410 2xtz_A Guanine nucleotide-bind 98.8 7.5E-09 2.5E-13 100.8 9.4 75 417-495 182-266 (354)
411 1zcb_A G alpha I/13; GTP-bindi 98.8 1.3E-08 4.5E-13 99.5 10.9 101 386-494 166-283 (362)
412 2ohf_A Protein OLA1, GTP-bindi 98.8 2.5E-09 8.4E-14 105.0 5.5 92 368-459 21-132 (396)
413 3sop_A Neuronal-specific septi 98.7 8.4E-08 2.9E-12 90.0 12.5 115 16-134 2-155 (270)
414 1puj_A YLQF, conserved hypothe 98.7 7.1E-09 2.4E-13 98.1 4.9 60 14-75 118-177 (282)
415 2wsm_A Hydrogenase expression/ 98.7 4.5E-09 1.5E-13 96.1 3.4 125 368-508 29-184 (221)
416 3zvr_A Dynamin-1; hydrolase, D 98.7 3.8E-08 1.3E-12 104.2 10.8 118 368-494 50-232 (772)
417 2www_A Methylmalonic aciduria 98.7 5.7E-09 1.9E-13 102.1 3.0 60 418-493 167-226 (349)
418 3p32_A Probable GTPase RV1496/ 98.6 2.6E-08 8.9E-13 97.8 5.5 61 418-494 172-232 (355)
419 3vqt_A RF-3, peptide chain rel 98.6 1.7E-07 6E-12 96.8 10.5 115 369-494 31-167 (548)
420 3cnl_A YLQF, putative uncharac 98.5 2.7E-08 9.2E-13 93.0 3.0 58 17-76 100-157 (262)
421 3l82_B F-box only protein 4; T 98.5 1.9E-07 6.6E-12 82.0 7.6 169 8-192 8-222 (227)
422 1f5n_A Interferon-induced guan 98.5 2.1E-07 7.1E-12 96.2 8.8 62 14-75 36-103 (592)
423 2hf9_A Probable hydrogenase ni 98.5 1.7E-09 5.8E-14 99.3 -7.3 28 368-395 37-64 (226)
424 2p67_A LAO/AO transport system 98.4 1.2E-07 4.2E-12 92.3 5.0 61 418-494 149-209 (341)
425 2v3c_C SRP54, signal recogniti 98.4 2.1E-07 7.3E-12 93.1 5.4 111 16-133 99-252 (432)
426 1yrb_A ATP(GTP)binding protein 98.3 2.5E-07 8.7E-12 86.7 3.9 70 419-494 110-186 (262)
427 4fn5_A EF-G 1, elongation fact 98.3 2.6E-06 9E-11 91.2 12.2 118 368-494 12-152 (709)
428 3sop_A Neuronal-specific septi 98.3 1.7E-06 5.9E-11 81.1 9.3 136 369-513 2-177 (270)
429 3dm5_A SRP54, signal recogniti 98.3 9.2E-06 3.2E-10 80.8 13.9 114 15-134 99-254 (443)
430 2qag_B Septin-6, protein NEDD5 98.3 5.5E-06 1.9E-10 82.0 12.1 27 368-394 41-67 (427)
431 3l2o_B F-box only protein 4; s 98.3 1.8E-06 6.3E-11 79.6 8.0 109 70-193 194-308 (312)
432 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 9.1E-07 3.1E-11 87.0 6.2 85 369-455 20-127 (392)
433 3j25_A Tetracycline resistance 98.2 5E-07 1.7E-11 95.4 3.4 114 370-494 3-134 (638)
434 2qm8_A GTPase/ATPase; G protei 98.2 1.1E-06 3.8E-11 85.3 5.6 22 369-390 55-76 (337)
435 2yv5_A YJEQ protein; hydrolase 98.1 3.7E-06 1.3E-10 80.3 6.0 78 428-513 66-146 (302)
436 2j37_W Signal recognition part 98.0 2.8E-06 9.5E-11 86.3 5.1 114 369-493 101-254 (504)
437 3kl4_A SRP54, signal recogniti 98.0 4E-05 1.4E-09 76.2 11.7 138 15-168 96-277 (433)
438 3szr_A Interferon-induced GTP- 97.9 2.9E-05 1E-09 81.4 10.4 69 63-134 147-229 (608)
439 1j8m_F SRP54, signal recogniti 97.8 6.1E-05 2.1E-09 71.4 9.6 112 16-134 98-254 (297)
440 2v3c_C SRP54, signal recogniti 97.7 4.7E-05 1.6E-09 76.1 6.7 127 370-511 100-267 (432)
441 1f5n_A Interferon-induced guan 97.7 3.5E-05 1.2E-09 79.6 5.7 62 367-428 36-101 (592)
442 3q5d_A Atlastin-1; G protein, 97.5 6.8E-05 2.3E-09 74.8 5.2 26 14-39 65-90 (447)
443 3ney_A 55 kDa erythrocyte memb 97.5 0.00021 7.2E-09 63.0 7.1 28 13-40 16-43 (197)
444 3l82_B F-box only protein 4; T 97.5 7.2E-05 2.5E-09 65.8 4.0 77 427-511 111-191 (227)
445 3dm5_A SRP54, signal recogniti 97.5 0.0004 1.4E-08 69.1 9.8 130 369-511 100-268 (443)
446 1tq4_A IIGP1, interferon-induc 97.5 0.00024 8.2E-09 70.3 8.1 112 369-492 69-188 (413)
447 3pxi_A Negative regulator of g 97.4 0.00075 2.6E-08 73.0 11.6 24 16-39 201-224 (758)
448 3e70_C DPA, signal recognition 97.4 0.00041 1.4E-08 66.6 8.4 139 14-168 127-307 (328)
449 2xxa_A Signal recognition part 97.4 0.00016 5.5E-09 72.2 5.6 113 15-134 99-255 (433)
450 1r6b_X CLPA protein; AAA+, N-t 97.2 0.001 3.4E-08 72.1 10.8 25 15-39 206-230 (758)
451 3szr_A Interferon-induced GTP- 97.2 0.0007 2.4E-08 71.0 8.2 25 371-395 47-71 (608)
452 1rj9_A FTSY, signal recognitio 97.1 0.002 6.9E-08 61.1 9.6 24 15-38 101-124 (304)
453 1bif_A 6-phosphofructo-2-kinas 97.1 0.00012 4E-09 74.5 1.0 105 14-126 37-156 (469)
454 2yhs_A FTSY, cell division pro 97.0 0.0011 3.7E-08 66.6 7.4 25 14-38 291-315 (503)
455 2rcn_A Probable GTPase ENGC; Y 97.0 0.00028 9.6E-09 68.3 2.7 25 16-40 215-239 (358)
456 3kl4_A SRP54, signal recogniti 96.9 0.00044 1.5E-08 68.7 3.5 82 417-511 179-267 (433)
457 1zu4_A FTSY; GTPase, signal re 96.9 0.0064 2.2E-07 58.1 11.3 25 14-38 103-127 (320)
458 1j8m_F SRP54, signal recogniti 96.8 0.0017 5.9E-08 61.4 6.2 82 418-512 181-269 (297)
459 3q5d_A Atlastin-1; G protein, 96.7 0.00084 2.9E-08 67.0 3.7 25 368-392 66-90 (447)
460 1vma_A Cell division protein F 96.7 0.011 3.9E-07 55.9 11.0 24 15-38 103-126 (306)
461 2px0_A Flagellar biosynthesis 96.6 0.0035 1.2E-07 59.3 6.8 114 15-134 104-254 (296)
462 4dzz_A Plasmid partitioning pr 96.6 0.0068 2.3E-07 53.7 8.5 67 61-132 74-143 (206)
463 3l2o_B F-box only protein 4; s 96.6 0.00095 3.3E-08 61.7 2.8 77 427-511 196-276 (312)
464 1ye8_A Protein THEP1, hypothet 96.5 0.0013 4.5E-08 57.1 3.1 24 17-40 1-24 (178)
465 1kgd_A CASK, peripheral plasma 96.4 0.0018 6.1E-08 56.4 3.3 26 15-40 4-29 (180)
466 3cf2_A TER ATPase, transitiona 96.4 0.027 9.3E-07 60.3 12.9 26 15-40 237-262 (806)
467 1ex7_A Guanylate kinase; subst 96.4 0.0015 5.1E-08 57.1 2.7 22 19-40 4-25 (186)
468 1lvg_A Guanylate kinase, GMP k 96.3 0.0015 5.1E-08 57.9 2.5 24 16-39 4-27 (198)
469 2ffh_A Protein (FFH); SRP54, s 96.2 0.01 3.4E-07 58.9 7.9 66 61-133 179-251 (425)
470 3cwq_A Para family chromosome 96.1 0.01 3.5E-07 52.9 7.1 68 61-133 66-134 (209)
471 3n70_A Transport activator; si 96.0 0.012 4.1E-07 49.0 6.6 93 15-128 23-115 (145)
472 1zp6_A Hypothetical protein AT 96.0 0.0042 1.4E-07 54.4 3.9 27 13-39 6-32 (191)
473 3tau_A Guanylate kinase, GMP k 96.0 0.0042 1.4E-07 55.5 3.6 27 14-40 6-32 (208)
474 1ye8_A Protein THEP1, hypothet 96.0 0.003 1E-07 54.9 2.5 23 371-393 2-24 (178)
475 1s96_A Guanylate kinase, GMP k 95.9 0.004 1.4E-07 56.1 3.3 28 13-40 13-40 (219)
476 1bif_A 6-phosphofructo-2-kinas 95.9 0.00046 1.6E-08 70.2 -3.4 101 368-472 38-148 (469)
477 3c8u_A Fructokinase; YP_612366 95.9 0.004 1.4E-07 55.6 3.2 28 13-40 19-46 (208)
478 3tr0_A Guanylate kinase, GMP k 95.9 0.0045 1.5E-07 54.9 3.4 25 15-39 6-30 (205)
479 3a00_A Guanylate kinase, GMP k 95.8 0.004 1.4E-07 54.5 2.8 22 19-40 4-25 (186)
480 1znw_A Guanylate kinase, GMP k 95.8 0.004 1.4E-07 55.5 2.8 29 12-40 16-44 (207)
481 1z6g_A Guanylate kinase; struc 95.8 0.0042 1.4E-07 55.9 2.8 27 14-40 21-47 (218)
482 1kgd_A CASK, peripheral plasma 95.8 0.0039 1.3E-07 54.2 2.5 22 371-392 7-28 (180)
483 2xxa_A Signal recognition part 95.8 0.015 5E-07 58.0 6.9 22 369-390 100-121 (433)
484 3ney_A 55 kDa erythrocyte memb 95.6 0.0042 1.4E-07 54.6 2.1 22 371-392 21-42 (197)
485 2j41_A Guanylate kinase; GMP, 95.6 0.0062 2.1E-07 54.0 3.3 27 14-40 4-30 (207)
486 2bbw_A Adenylate kinase 4, AK4 95.6 0.0065 2.2E-07 55.8 3.5 24 14-37 25-48 (246)
487 1lvg_A Guanylate kinase, GMP k 95.6 0.0048 1.6E-07 54.6 2.5 21 371-391 6-26 (198)
488 4gp7_A Metallophosphoesterase; 95.6 0.0057 1.9E-07 52.7 2.8 24 15-38 8-31 (171)
489 1kag_A SKI, shikimate kinase I 95.6 0.0055 1.9E-07 52.6 2.7 24 16-39 4-27 (173)
490 3t61_A Gluconokinase; PSI-biol 95.6 0.0056 1.9E-07 54.2 2.8 24 16-39 18-41 (202)
491 3asz_A Uridine kinase; cytidin 95.5 0.0068 2.3E-07 54.0 3.3 26 14-39 4-29 (211)
492 4dzz_A Plasmid partitioning pr 95.5 0.036 1.2E-06 48.9 7.9 87 418-513 76-162 (206)
493 1kht_A Adenylate kinase; phosp 95.5 0.0081 2.8E-07 52.5 3.4 24 15-38 2-25 (192)
494 2qor_A Guanylate kinase; phosp 95.4 0.0075 2.6E-07 53.5 3.1 27 14-40 10-36 (204)
495 3tif_A Uncharacterized ABC tra 95.4 0.0071 2.4E-07 55.1 3.0 26 15-40 30-55 (235)
496 3cm0_A Adenylate kinase; ATP-b 95.4 0.0095 3.3E-07 51.8 3.7 25 14-38 2-26 (186)
497 1knq_A Gluconate kinase; ALFA/ 95.4 0.01 3.5E-07 51.1 3.9 26 14-39 6-31 (175)
498 4ido_A Atlastin-1; GTPase, GTP 95.4 0.023 7.9E-07 56.3 6.7 23 15-37 66-88 (457)
499 2pcj_A ABC transporter, lipopr 95.4 0.0079 2.7E-07 54.3 3.0 25 16-40 30-54 (224)
500 2lv7_A Calcium-binding protein 95.3 0.019 6.7E-07 44.3 4.8 69 253-321 27-97 (100)
No 1
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=9.5e-40 Score=332.16 Aligned_cols=278 Identities=16% Similarity=0.123 Sum_probs=187.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeCCeeEEEEEeCCCCc--------cchhhHHHhh
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYPDRVPITIIDTPSSV--------EDRGKLGEEL 84 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~ 84 (514)
..+|+|+|+||||||||+|+|++.++ +++...+++|... .+...+..+.+|||||++ ........++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~--~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERI--SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEEC--C-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc--eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 47999999999999999999999884 4455566776433 344567889999999986 3344556789
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccc
Q 010254 85 RRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALK 164 (514)
Q Consensus 85 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 164 (514)
++||++|+|+|++++.+..+. .+...+++. ++|+++|+||+|+... + ....++. .+ ++.+++++||++
T Consensus 81 ~~ad~il~vvD~~~~~~~~d~--~~~~~l~~~--~~pvilv~NK~D~~~~-~-----~~~~~~~-~l-g~~~~~~iSA~~ 148 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAADE--EVAKILYRT--KKPVVLAVNKLDNTEM-R-----ANIYDFY-SL-GFGEPYPISGTH 148 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHHH--HHHHHHTTC--CSCEEEEEECCCC-----------CCCSSG-GG-SSCCCEECBTTT
T ss_pred HhCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCccc-h-----hhHHHHH-Hc-CCCCeEEEeCcC
Confidence 999999999999988776553 266667665 8999999999998754 1 1111111 12 233789999999
Q ss_pred cccceecCCCCChhhHHHHHHHHHHHhcCcccCCCcchhhHHHHHHHHHhcCCcchhhHHHhhccCCCccccccCCCCCC
Q 010254 165 QIQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLADELIPYS 244 (514)
Q Consensus 165 ~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~~~~~~L~~~~~~~~~~~~~~~~~~~ 244 (514)
|. |+++|++.+.+.+++....
T Consensus 149 g~------------gv~~L~~~i~~~l~~~~~~----------------------------------------------- 169 (436)
T 2hjg_A 149 GL------------GLGDLLDAVAEHFKNIPET----------------------------------------------- 169 (436)
T ss_dssp TB------------THHHHHHHHHHTGGGCCSS-----------------------------------------------
T ss_pred CC------------ChHHHHHHHHHhcCccccc-----------------------------------------------
Confidence 99 9999999988766431000
Q ss_pred CccCCCCCceecChhHHHHHHHHHHhhcCCCCCCCCHHhHHhhhccCCCCCCCCCcccccccccCCCcccHHHHHHHhhh
Q 010254 245 AFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECPWDEAPYKDAAEKTALGGLSLDGFLSEWAL 324 (514)
Q Consensus 245 ~l~~~~~~~~elt~~~~~~L~~iF~~fd~~~d~~l~~~~l~~~f~~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~w~~ 324 (514)
T Consensus 170 -------------------------------------------------------------------------------- 169 (436)
T 2hjg_A 170 -------------------------------------------------------------------------------- 169 (436)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCHHHHHHHHHHhCCCCChhhHHHHhhhhhhhhhhhcccCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCC-CCCC
Q 010254 325 MTLLDPARSVENLIYIGYPGDPSSAIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-PTTD 403 (514)
Q Consensus 325 ~~~~~~~~~~~~l~~~g~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~-~~~~ 403 (514)
......+||+++|++|||||||+|+|++.++..++. +++|
T Consensus 170 ---------------------------------------~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT 210 (436)
T 2hjg_A 170 ---------------------------------------KYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTT 210 (436)
T ss_dssp ---------------------------------------CCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC------
T ss_pred ---------------------------------------cccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCce
Confidence 001124799999999999999999999998764443 3333
Q ss_pred ccEEEEEEECCCCcEEEEEEecCCh----------hHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcC
Q 010254 404 ERYAVNVVDQPGGTKKTVVLREIPE----------EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYG 473 (514)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~i~dt~g~----------~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~ 473 (514)
.+.....+... + ..+.+|||+|. +.|..+. ...+++.+|++++|+|++++.+++.. .|+..+...
T Consensus 211 ~d~~~~~~~~~-~-~~~~l~DT~G~~~~~~~~~~~e~~~~~~-~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~- 285 (436)
T 2hjg_A 211 RDAVDTSFTYN-Q-QEFVIVDTAGMRKKGKVYETTEKYSVLR-ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA- 285 (436)
T ss_dssp ---CCEEEEET-T-EEEEETTHHHHTCBTTBCCCCSHHHHHH-HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT-
T ss_pred eeeeEEEEEEC-C-eEEEEEECCCcCcCccccchHHHHHHHH-HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc-
Confidence 33333344444 3 45779999997 6665443 23578899999999999998887765 465555442
Q ss_pred CCCCCCCcEEEEEeCCCCcccc
Q 010254 474 EDTGFEVPCLIVAAKDDLDSFA 495 (514)
Q Consensus 474 ~~~~~~~p~ilv~nK~Dl~~~~ 495 (514)
++|+++|+||||+...+
T Consensus 286 -----~~~iiiv~NK~Dl~~~~ 302 (436)
T 2hjg_A 286 -----GKAVVIVVNKWDAVDKD 302 (436)
T ss_dssp -----TCEEEEEEECGGGSCCC
T ss_pred -----CCcEEEEEECccCCCcc
Confidence 69999999999997654
No 2
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=100.00 E-value=7e-38 Score=320.26 Aligned_cols=292 Identities=15% Similarity=0.116 Sum_probs=189.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCc--------cchhhHHH
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSV--------EDRGKLGE 82 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~ 82 (514)
|...+|+|+|+||||||||+|+|+++++ +.+...+++|.. ..+...+..+.+|||||+. ........
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~--~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERI--SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEE--C-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC--cccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 5568999999999999999999999884 344445666633 3344567899999999953 34445667
Q ss_pred hhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCc
Q 010254 83 ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSA 162 (514)
Q Consensus 83 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 162 (514)
+++++|++|+|+|+.++.+..+ ..+...+++. ++|+++|+||+|+... + ....++. .+ .+..++++||
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~d--~~l~~~l~~~--~~pvilV~NK~D~~~~-~-----~~~~e~~-~l-g~~~~~~iSA 166 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAAD--EEVAKILYRT--KKPVVLAVNKLDNTEM-R-----ANIYDFY-SL-GFGEPYPISG 166 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHHH--HHHHHHHTTC--CSCEEEEEECC---------------CCSG-GG-SSSSEEECCT
T ss_pred hHhhCCEEEEEEeCCCCCChHH--HHHHHHHHHc--CCCEEEEEECccchhh-h-----hhHHHHH-Hc-CCCceEEeec
Confidence 8999999999999876555443 3367777765 8999999999998754 1 0001111 11 2336789999
Q ss_pred cccccceecCCCCChhhHHHHHHHHHHHhcCcccCCCcchhhHHHHHHHHHhcCCcchhhHHHhhccCCCccccccCCCC
Q 010254 163 LKQIQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLADELIP 242 (514)
Q Consensus 163 ~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~~~~~~L~~~~~~~~~~~~~~~~~ 242 (514)
++|. |+.+|.+.+.+.++.....
T Consensus 167 ~~g~------------gv~~L~~~i~~~l~~~~~~--------------------------------------------- 189 (456)
T 4dcu_A 167 THGL------------GLGDLLDAVAEHFKNIPET--------------------------------------------- 189 (456)
T ss_dssp TTCT------------THHHHHHHHHTTGGGSCSS---------------------------------------------
T ss_pred cccc------------chHHHHHHHHhhccccccc---------------------------------------------
Confidence 9999 9999998887644321000
Q ss_pred CCCccCCCCCceecChhHHHHHHHHHHhhcCCCCCCCCHHhHHhhhccCCCCCCCCCcccccccccCCCcccHHHHHHHh
Q 010254 243 YSAFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECPWDEAPYKDAAEKTALGGLSLDGFLSEW 322 (514)
Q Consensus 243 ~~~l~~~~~~~~elt~~~~~~L~~iF~~fd~~~d~~l~~~~l~~~f~~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~w 322 (514)
T Consensus 190 -------------------------------------------------------------------------------- 189 (456)
T 4dcu_A 190 -------------------------------------------------------------------------------- 189 (456)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcCCHHHHHHHHHHhCCCCChhhHHHHhhhhhhhhhhhcccCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCC-CC
Q 010254 323 ALMTLLDPARSVENLIYIGYPGDPSSAIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-PT 401 (514)
Q Consensus 323 ~~~~~~~~~~~~~~l~~~g~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~-~~ 401 (514)
......+||+++|.+|||||||+|+|++.++..... ++
T Consensus 190 -----------------------------------------~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~g 228 (456)
T 4dcu_A 190 -----------------------------------------KYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAG 228 (456)
T ss_dssp -----------------------------------------CCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC---
T ss_pred -----------------------------------------ccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCC
Confidence 001234799999999999999999999887544443 33
Q ss_pred CCccEEEEEEECCCCcEEEEEEecCC----------hhHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHH-HHHHH
Q 010254 402 TDERYAVNVVDQPGGTKKTVVLREIP----------EEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATEL-LVEVA 470 (514)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~i~dt~g----------~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~-~~~~~ 470 (514)
++.+.....+... + ..+.+|||+| ++.|..+. ...+++.+|++++|+|+++. +.....+ ...+.
T Consensus 229 tt~~~~~~~~~~~-~-~~~~l~DT~G~~~~~~~~~~~e~~~~~~-~~~~~~~ad~~llviD~~~~--~~~~~~~~~~~~~ 303 (456)
T 4dcu_A 229 TTRDAVDTSFTYN-Q-QEFVIVDTAGMRKKGKVYETTEKYSVLR-ALKAIDRSEVVAVVLDGEEG--IIEQDKRIAGYAH 303 (456)
T ss_dssp ---CTTSEEEEET-T-EEEEETTGGGTTTBTTBCCCCSHHHHHH-HHHHHHHCSEEEEEEETTTC--CCHHHHHHHHHHH
T ss_pred eEEEEEEEEEEEC-C-ceEEEEECCCCCcCcccchHHHHHHHHH-HHHHHhhCCEEEEEEeCCCC--cCHHHHHHHHHHH
Confidence 3333332344444 3 4677999999 67777554 24578899999999999986 3334333 33343
Q ss_pred hcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHc
Q 010254 471 SYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFL 508 (514)
Q Consensus 471 ~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~ 508 (514)
. . ++|+++|+||||+...+ ...++..+.+++.
T Consensus 304 ~-~-----~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~ 336 (456)
T 4dcu_A 304 E-A-----GKAVVIVVNKWDAVDKDESTMKEFEENIRDH 336 (456)
T ss_dssp H-T-----TCEEEEEEECGGGSCCCSSHHHHHHHHHHHH
T ss_pred H-c-----CCCEEEEEEChhcCCCchHHHHHHHHHHHHh
Confidence 3 2 69999999999998654 4455556665554
No 3
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=100.00 E-value=1.5e-36 Score=308.88 Aligned_cols=284 Identities=18% Similarity=0.154 Sum_probs=181.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccc---------hhhHHHhh
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVED---------RGKLGEEL 84 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~ 84 (514)
.+|+|+|+||||||||+|+|++++ .+++...+++|.. ..+...+..+.+|||||++.. ......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~--~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKK--KAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC----------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 379999999999999999999988 4455556777643 334456778999999998752 23456689
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccc
Q 010254 85 RRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALK 164 (514)
Q Consensus 85 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 164 (514)
++||++++|+|++++.+..+. .+..++++. ++|+++|+||+|+... . ..+...++. .++ +.+++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~---~-~~~~~~~~~-~lg-~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLRE---F-EREVKPELY-SLG-FGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHH---H-HHHTHHHHG-GGS-SCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCccc---c-HHHHHHHHH-hcC-CCCEEEEeccC
Confidence 999999999999887665443 255666665 8999999999998532 1 111102222 222 33689999999
Q ss_pred cccceecCCCCChhhHHHHHHHHHHHhcCcccCCCcchhhHHHHHHHHHhcCCcchhhHHHhhccCCCccccccCCCCCC
Q 010254 165 QIQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERGLTLAGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLADELIPYS 244 (514)
Q Consensus 165 ~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~~~~~~L~~~~~~~~~~~~~~~~~~~ 244 (514)
|. |+++|++.+.+.+++.... . ..
T Consensus 150 g~------------gv~~L~~~i~~~l~~~~~~----------------------------------~---------~~- 173 (439)
T 1mky_A 150 NI------------NLDTMLETIIKKLEEKGLD----------------------------------L---------ES- 173 (439)
T ss_dssp TB------------SHHHHHHHHHHHHHHTTCC----------------------------------S---------SS-
T ss_pred CC------------CHHHHHHHHHHhccccccc----------------------------------c---------hh-
Confidence 99 9999999988766421000 0 00
Q ss_pred CccCCCCCceecChhHHHHHHHHHHhhcCCCCCCCCHHhHHhhhccCCCCCCCCCcccccccccCCCcccHHHHHHHhhh
Q 010254 245 AFKRAPDQSVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECPWDEAPYKDAAEKTALGGLSLDGFLSEWAL 324 (514)
Q Consensus 245 ~l~~~~~~~~elt~~~~~~L~~iF~~fd~~~d~~l~~~~l~~~f~~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~w~~ 324 (514)
T Consensus 174 -------------------------------------------------------------------------------- 173 (439)
T 1mky_A 174 -------------------------------------------------------------------------------- 173 (439)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCHHHHHHHHHHhCCCCChhhHHHHhhhhhhhhhhhcccCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCc
Q 010254 325 MTLLDPARSVENLIYIGYPGDPSSAIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDE 404 (514)
Q Consensus 325 ~~~~~~~~~~~~l~~~g~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~ 404 (514)
.......+||+++|++|||||||+|+|++..+..++..++++
T Consensus 174 --------------------------------------~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT 215 (439)
T 1mky_A 174 --------------------------------------KPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTT 215 (439)
T ss_dssp --------------------------------------CCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC---
T ss_pred --------------------------------------ccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCc
Confidence 000112489999999999999999999999875554433333
Q ss_pred c-EEEEEEECCCCcEEEEEEecCChhHHHhhh----------cCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcC
Q 010254 405 R-YAVNVVDQPGGTKKTVVLREIPEEAVAKLL----------SNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYG 473 (514)
Q Consensus 405 ~-~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~----------~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~ 473 (514)
+ .....+.+. + ..+.+|||+|.+...... .....++.+|++++|+|+++..+.+.. ++..+....
T Consensus 216 ~d~~~~~i~~~-g-~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~~ 291 (439)
T 1mky_A 216 RDPVDDEVFID-G-RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMERR 291 (439)
T ss_dssp ---CCEEEEET-T-EEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT
T ss_pred CCceEEEEEEC-C-EEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHHc
Confidence 3 222445555 3 356789999975443221 112356789999999999987665542 233322222
Q ss_pred CCCCCCCcEEEEEeCCCCcccc
Q 010254 474 EDTGFEVPCLIVAAKDDLDSFA 495 (514)
Q Consensus 474 ~~~~~~~p~ilv~nK~Dl~~~~ 495 (514)
++|+++|+||||+...+
T Consensus 292 -----~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 292 -----GRASVVVFNKWDLVVHR 308 (439)
T ss_dssp -----TCEEEEEEECGGGSTTG
T ss_pred -----CCCEEEEEECccCCCch
Confidence 69999999999997643
No 4
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.95 E-value=7.9e-28 Score=219.98 Aligned_cols=164 Identities=23% Similarity=0.301 Sum_probs=129.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT--RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t--t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
+++.+||+|+|++|||||||+++|+.+.|...+.++.+.. +....+....+.+.||||+|++++...+..+++.+|++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 4567999999999999999999999999877665544322 23334456678999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccce
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVK 169 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~ 169 (514)
++|||++++.+|+.+.. |+..++.. .++.|++||+||+|+.+. |.++.++ ...+++.++. ++++|||++|.
T Consensus 90 ilv~di~~~~Sf~~i~~-~~~~i~~~~~~~~piilVgNK~Dl~~~-r~V~~~e-~~~~a~~~~~--~~~e~SAktg~--- 161 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTK-WIDDVRTERGSDVIIMLVGNKTDLADK-RQVSIEE-GERKAKELNV--MFIETSAKAGY--- 161 (216)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHTTSSEEEEEEECTTCGGG-CCSCHHH-HHHHHHHHTC--EEEEEBTTTTB---
T ss_pred EEEeecchhHHHHHHHH-HHHHHHHhcCCCCeEEEEeeccchHhc-CcccHHH-HhhHHHHhCC--eeEEEeCCCCc---
Confidence 99999999999999987 87777654 468999999999999876 6666554 4678888875 79999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHHhcC
Q 010254 170 CFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 170 ~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
|++++.+.|.+.+..
T Consensus 162 ---------nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 162 ---------NVKQLFRRVAAALPG 176 (216)
T ss_dssp ---------SHHHHHHHHHHHC--
T ss_pred ---------CHHHHHHHHHHHHHh
Confidence 999999988877653
No 5
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.95 E-value=3.9e-28 Score=246.72 Aligned_cols=230 Identities=20% Similarity=0.215 Sum_probs=159.6
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccchhhH--------
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRGKL-------- 80 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~~~-------- 80 (514)
..+++++|+|+|+||||||||+|+|++.+ ..+++..++||.. ..+..++.++.+|||||++++....
T Consensus 229 ~~r~~~kV~ivG~~nvGKSSLln~L~~~~--~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~ 306 (476)
T 3gee_A 229 IVSEGVSTVIAGKPNAGKSTLLNTLLGQE--RAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRS 306 (476)
T ss_dssp HHHHCEEEEEECCTTSSHHHHHHHCC--------------------CEEEEETTEEEEEEC-------------------
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHhCCC--CcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHH
Confidence 34578999999999999999999999987 3455556666633 3455678899999999998765443
Q ss_pred HHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEc
Q 010254 81 GEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIEC 160 (514)
Q Consensus 81 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (514)
..+++.+|++++|+|++++.+++.+.. +...+.... ++|+++|+||+|+... +... .+.+.+. + ..++++|
T Consensus 307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l~-~~piIvV~NK~Dl~~~-~~~~----~~~l~~~-~-~~~~i~v 377 (476)
T 3gee_A 307 RMKMAEADLILYLLDLGTERLDDELTE-IRELKAAHP-AAKFLTVANKLDRAAN-ADAL----IRAIADG-T-GTEVIGI 377 (476)
T ss_dssp -CCCSSCSEEEEEEETTTCSSGGGHHH-HHHHHHHCT-TSEEEEEEECTTSCTT-THHH----HHHHHHH-H-TSCEEEC
T ss_pred HhhcccCCEEEEEEECCCCcchhhhHH-HHHHHHhcC-CCCEEEEEECcCCCCc-cchh----HHHHHhc-C-CCceEEE
Confidence 336889999999999999888754332 444444433 7999999999999875 2111 1223332 1 2389999
Q ss_pred CccccccceecCCCCChhhHHHHHHHHHHHhc-Ccc-cCCCcchhhHHHHHHHHHhcCCcchhhHHHhhccCCCcccccc
Q 010254 161 SALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR-EGV-NERGLTLAGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLAD 238 (514)
Q Consensus 161 Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~-~~~-~~~~~~~~~~~~~~~l~~~~~r~~~~~~~L~~~~~~~~~~~~~ 238 (514)
||++|. |+++|++.|.+.+. ... ...+....+.++.+.+ +.+...|+.+......+++.
T Consensus 378 SAktg~------------GI~eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~l-------~~a~~~L~~~~~~l~~~~~~ 438 (476)
T 3gee_A 378 SALNGD------------GIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEAL-------RNASDALQNALELIAHESET 438 (476)
T ss_dssp BTTTTB------------SHHHHHHHHTHHHHSSCCCCTTSCCCCSHHHHHHH-------HHHHHHHHHHHTTTTTTCCS
T ss_pred EECCCC------------CHHHHHHHHHHHHhhccCCCCcccccccHHHHHHH-------HHHHHHHHHHHHHHHcCCCH
Confidence 999999 99999999999887 332 2344567788999998 88999999887666566777
Q ss_pred CCCCCCCccCCCCCceecChhHH--HHHHHHHHhhc
Q 010254 239 ELIPYSAFKRAPDQSVELTNEAI--DFLKGIFELFD 272 (514)
Q Consensus 239 ~~~~~~~l~~~~~~~~elt~~~~--~~L~~iF~~fd 272 (514)
|++++ +++.+...++++||... ++|++||++|.
T Consensus 439 dl~a~-~lr~a~~~Lg~itG~~~~edlL~~iF~~FC 473 (476)
T 3gee_A 439 ELIAF-ELRAALDYVGQITGKVVNEEVLNTIFDKFC 473 (476)
T ss_dssp SSHHH-HHHHHHHHHHHHHTSSCCSSHHHHHHTTSC
T ss_pred HHHHH-HHHHHHHHHHHHhCCCCcHHHHHHHHhcCC
Confidence 88876 99999999999999877 99999999996
No 6
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.93 E-value=1.6e-27 Score=241.29 Aligned_cols=225 Identities=20% Similarity=0.229 Sum_probs=164.0
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccchhhHH-------
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRGKLG------- 81 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~~~~------- 81 (514)
..+++++|+|+|+||||||||+|+|++.+ .++++..++||.. ..+..++.++.+|||||++++.+..+
T Consensus 220 ~~r~~~kV~ivG~~nvGKSSLln~L~~~~--~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~ 297 (462)
T 3geh_A 220 LLRTGLKVAIVGRPNVGKSSLLNAWSQSD--RAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERS 297 (462)
T ss_dssp HHHHCEEEEEEECTTSSHHHHHHHHHHHH--BSCCSCCTTCCHHHHHHEEEETTEEEEECC-------------------
T ss_pred hhcCCCEEEEEcCCCCCHHHHHHHHhCCC--cccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHH
Confidence 34578999999999999999999999987 3445556666633 34556788999999999876554332
Q ss_pred -HhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEc
Q 010254 82 -EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIEC 160 (514)
Q Consensus 82 -~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (514)
.+++.+|++++|+|++++.+.... .|+..+. ++|+++|+||+|+.... ... .... +....++++|
T Consensus 298 ~~~~~~aD~vl~VvD~s~~~~~~~~--~i~~~l~----~~piivV~NK~Dl~~~~-~~~---~~~~----~~~~~~~i~i 363 (462)
T 3geh_A 298 RQAANTADLVLLTIDAATGWTTGDQ--EIYEQVK----HRPLILVMNKIDLVEKQ-LIT---SLEY----PENITQIVHT 363 (462)
T ss_dssp -CCCCSCSEEEEEEETTTCSCHHHH--HHHHHHT----TSCEEEEEECTTSSCGG-GST---TCCC----CTTCCCEEEE
T ss_pred hhhhhcCCEEEEEeccCCCCCHHHH--HHHHhcc----CCcEEEEEECCCCCcch-hhH---HHHH----hccCCcEEEE
Confidence 357899999999999987776553 2666553 47999999999998752 111 1111 1112379999
Q ss_pred CccccccceecCCCCChhhHHHHHHHHHHHhcCcc--cCCCcchhhHHHHHHHHHhcCCcchhhHHHhhccCCCcccccc
Q 010254 161 SALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREGV--NERGLTLAGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLAD 238 (514)
Q Consensus 161 Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~r~~~~~~~L~~~~~~~~~~~~~ 238 (514)
||++|. |+++|++.|.+.+.... ........+.++...+ +.+...|+.+....+.+++.
T Consensus 364 SAktg~------------Gi~eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~L-------~~a~~~L~~~~~~l~~~~~~ 424 (462)
T 3geh_A 364 AAAQKQ------------GIDSLETAILEIVQTGKVQAADMDLAINQRQAAAL-------TQAKMSLEQVQATITQQLPL 424 (462)
T ss_dssp BTTTTB------------SHHHHHHHHHHHHTTSSSSSCCSSCCCCHHHHHHH-------HHHHHHHHHHHHHTTTTCCG
T ss_pred ECCCCC------------CHHHHHHHHHHHHhccCCCCcccceechHHHHHHH-------HHHHHHHHHHHHHHhcCCCH
Confidence 999999 99999999999887553 2334566788999998 88888888875544445667
Q ss_pred CCCCCCCccCCCCCceecChhHH--HHHHHHHHhhc
Q 010254 239 ELIPYSAFKRAPDQSVELTNEAI--DFLKGIFELFD 272 (514)
Q Consensus 239 ~~~~~~~l~~~~~~~~elt~~~~--~~L~~iF~~fd 272 (514)
|++++ +++.+...++++||... ++|++||++|.
T Consensus 425 dl~a~-~Lr~a~~~l~~itg~~~~e~~l~~iFs~FC 459 (462)
T 3geh_A 425 DFWTI-DLRGAIQALGEITGEEVTESVLDRIFSRFC 459 (462)
T ss_dssp GGTHH-HHHHHHHHHHHHHTSSCCHHHHHHHHHTSC
T ss_pred HHHHH-HHHHHHHHHhHhhCCCchHHHHHHHHhhCC
Confidence 88876 99999999999999977 99999999996
No 7
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.93 E-value=1.2e-25 Score=203.32 Aligned_cols=169 Identities=22% Similarity=0.339 Sum_probs=132.5
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCE
Q 010254 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (514)
Q Consensus 11 ~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ 89 (514)
...+..+||+|+|++|||||||+|+|++..+...+.++..... ....+....+.+.+|||||.+.+......+++++|+
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 3446789999999999999999999999987555444332221 223344556788999999999998888999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc-cchhHhhhhHHHHHHHhccCcEEEcCccccccc
Q 010254 90 VVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-QQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (514)
Q Consensus 90 ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~ 168 (514)
+++|||++++.+++.+...|+..+....++.|+++|+||+|+.+.. +... .+....+++.++. ..+++|||++|.
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~Sa~~~~-- 173 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVT-KQEGDDLCQKLGC-VAYIEASSVAKI-- 173 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCC-HHHHHHHHHHHTC-SCEEECBTTTTB--
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCccc-HHHHHHHHHhcCC-CEEEEeecCCCC--
Confidence 9999999999999998667999998877789999999999997642 2233 3345667777764 249999999999
Q ss_pred eecCCCCChhhHHHHHHHHHHHhcC
Q 010254 169 KCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 169 ~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
|++++++.+.+.+..
T Consensus 174 ----------gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 174 ----------GLNEVFEKSVDCIFS 188 (194)
T ss_dssp ----------SHHHHHHHHHHHHHC
T ss_pred ----------CHHHHHHHHHHHHHh
Confidence 999999998887643
No 8
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.93 E-value=1.7e-27 Score=242.06 Aligned_cols=225 Identities=20% Similarity=0.243 Sum_probs=168.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCc-cchh--------hH
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSV-EDRG--------KL 80 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~-~~~~--------~~ 80 (514)
.+.+++|+|+|+||||||||+|+|++.+ .++++..++||.. ..+..++.++.||||||++ ++.+ ..
T Consensus 240 ~r~~~kV~ivG~pnvGKSSLln~L~~~~--~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~ 317 (482)
T 1xzp_A 240 LNRGLRMVIVGKPNVGKSTLLNRLLNED--RAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERT 317 (482)
T ss_dssp HHHCEEEEEECCHHHHTCHHHHHHHHHT--BCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHH
T ss_pred ccCCCEEEEECcCCCcHHHHHHHHHCCC--CCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHH
Confidence 3467999999999999999999999987 3445556676633 3455568899999999998 5542 34
Q ss_pred HHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEc
Q 010254 81 GEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIEC 160 (514)
Q Consensus 81 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (514)
..+++.+|++|+|+|++++.++++.. +++.+ .++|+++|+||+|+... ...+ .+.+..+...++++|
T Consensus 318 ~~~~~~aD~vl~VvD~s~~~s~~~~~--il~~l----~~~piivV~NK~DL~~~---~~~~----~~~~~~~~~~~~i~i 384 (482)
T 1xzp_A 318 LQEIEKADIVLFVLDASSPLDEEDRK--ILERI----KNKRYLVVINKVDVVEK---INEE----EIKNKLGTDRHMVKI 384 (482)
T ss_dssp HHHHHHCSEEEEEEETTSCCCHHHHH--HHHHH----TTSSEEEEEEECSSCCC---CCHH----HHHHHHTCSTTEEEE
T ss_pred HHHhhcccEEEEEecCCCCCCHHHHH--HHHHh----cCCCEEEEEECcccccc---cCHH----HHHHHhcCCCcEEEE
Confidence 56889999999999999988876643 44444 27899999999999653 1111 122222211279999
Q ss_pred CccccccceecCCCCChhhHHHHHHHHHHHhcCccc-CCCcchhhHHHHHHHHHhcCCcchhhHHHhhccCCCccccccC
Q 010254 161 SALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREGVN-ERGLTLAGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLADE 239 (514)
Q Consensus 161 Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~r~~~~~~~L~~~~~~~~~~~~~~ 239 (514)
||++|. |+++|++.|.+.+..... .......+.++...+ +.+...|..+......+++.+
T Consensus 385 SAktg~------------Gi~eL~~~l~~~~~~~~~~~~~~~~~~~R~~~~l-------~~a~~~L~~~~~~l~~~~~~~ 445 (482)
T 1xzp_A 385 SALKGE------------GLEKLEESIYRETQEIFERGSDSLITNLRQKQLL-------ENVKGHLEDAIKSLKEGMPVD 445 (482)
T ss_dssp EGGGTC------------CHHHHHHHHHHHTHHHHHHHTTCSCCSHHHHHHH-------HHHHHHHHHHHHHHHTTCCHH
T ss_pred ECCCCC------------CHHHHHHHHHHHHhhhcCCCCcceEhhHHHHHHH-------HHHHHHHHHHHHHHHcCCcHH
Confidence 999999 999999999887653211 233455677888888 888888887754433445567
Q ss_pred CCCCCCccCCCCCceecChhHH--HHHHHHHHhhc
Q 010254 240 LIPYSAFKRAPDQSVELTNEAI--DFLKGIFELFD 272 (514)
Q Consensus 240 ~~~~~~l~~~~~~~~elt~~~~--~~L~~iF~~fd 272 (514)
++.+ +++.+...+++++|... ++|++||++|.
T Consensus 446 l~a~-~lr~a~~~L~~itG~~~~edlL~~IFs~FC 479 (482)
T 1xzp_A 446 MASI-DLERALNLLDEVTGRSFREDLLDTIFSNFC 479 (482)
T ss_dssp HHHH-HHHHHHHHHHHHHTSSCCHHHHHHHHTTSC
T ss_pred HHHH-HHHHHHHHHHHHHCCCChHHHHHHHHhcCC
Confidence 7765 89999999999999876 99999999996
No 9
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.93 E-value=2.1e-25 Score=199.74 Aligned_cols=164 Identities=16% Similarity=0.172 Sum_probs=125.8
Q ss_pred CCCCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhcc
Q 010254 8 NSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRA 87 (514)
Q Consensus 8 ~~~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a 87 (514)
......+..+||+|+|++|||||||+|+|+++.+...+.++....+....+....+.+.+|||+|++.+. +++.+
T Consensus 12 ~~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~ 86 (184)
T 3ihw_A 12 ENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV 86 (184)
T ss_dssp ----CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred CCCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence 3445567889999999999999999999999987665544322222334444556888999999998765 78899
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccc-cchhHhhhhHHHHHHHhccCcEEEcCccc
Q 010254 88 DAVVLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDEN-QQVSLEQVMMPIMQQFREIETCIECSALK 164 (514)
Q Consensus 88 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 164 (514)
|++++|||++++.+++.+.. |+..+.... .+.|+++|+||+|+.... +.+.. +....+++.++.. ++++|||++
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~-~~~~~~~~~~~~~-~~~e~Sa~~ 163 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDD-SRARKLSTDLKRC-TYYETCATY 163 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHH-HHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCH-HHHHHHHHHTTTC-EEEEEBTTT
T ss_pred CEEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccccCH-HHHHHHHHHcCCC-eEEEecCCC
Confidence 99999999999999999876 999888763 478999999999996322 33333 3446677776533 899999999
Q ss_pred cccceecCCCCChhhHHHHHHHHHHHh
Q 010254 165 QIQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 165 ~~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
|. |++++++.+.+.+
T Consensus 164 ~~------------gv~~lf~~l~~~i 178 (184)
T 3ihw_A 164 GL------------NVERVFQDVAQKV 178 (184)
T ss_dssp TB------------THHHHHHHHHHHH
T ss_pred CC------------CHHHHHHHHHHHH
Confidence 99 9999998887755
No 10
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.93 E-value=8.2e-26 Score=206.56 Aligned_cols=140 Identities=19% Similarity=0.284 Sum_probs=117.9
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.+||+++|++|||||||++||+.+.|...+.+|.+.++..+.+...+....+.+|||+|+++|.++. +.+++++++++
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~--~~~~~~a~~~i 90 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLI--PSYIRDSAAAV 90 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGH--HHHHTTCSEEE
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHH--HHHhccccEEE
Confidence 4899999999999999999999999999999999999988888888666677799999999999887 68899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+|||+++++||+.+..|+..+..... +++|++|||||+|+...+ +..++++++|++++++||
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~---~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~ 153 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERG---SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFI 153 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHT---TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcC---CCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeE
Confidence 99999999999999999999877643 379999999999998876 788999999999999886
No 11
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=8.9e-25 Score=197.45 Aligned_cols=165 Identities=21% Similarity=0.377 Sum_probs=129.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t-t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
....+||+|+|++|||||||+|+|++..+...+.++.... .....+....+.+.+|||||++++......+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 3467999999999999999999999988755444333221 122333445688999999999999888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc-----------cchhHhhhhHHHHHHHhccCcEEEc
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIEC 160 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (514)
+|||++++.+++.+...|+..+....+++|+++|+||+|+.+.. +.... +....+++.++. .++++|
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~-~~~~~~ 172 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICV-EQGQKLAKEIGA-CCYVEC 172 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCH-HHHHHHHHHHTC-SCEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCH-HHHHHHHHHcCC-cEEEEe
Confidence 99999999999998756999998877789999999999997642 12222 234556666653 279999
Q ss_pred CccccccceecCCCCChhhHHHHHHHHHHHh
Q 010254 161 SALKQIQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 161 Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
||++|. |++++++.|.+.+
T Consensus 173 Sa~~g~------------gi~~l~~~l~~~i 191 (194)
T 2atx_A 173 SALTQK------------GLKTVFDEAIIAI 191 (194)
T ss_dssp CTTTCT------------THHHHHHHHHHHH
T ss_pred eCCCCC------------CHHHHHHHHHHHH
Confidence 999999 9999999988754
No 12
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.93 E-value=9.2e-25 Score=192.04 Aligned_cols=162 Identities=22% Similarity=0.313 Sum_probs=125.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
|+.+||+|+|++|||||||+|+|+++.+.....++..... ....+....+.+.+|||||.+.+......+++.+|++++
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 3579999999999999999999999876544433222111 222344557889999999999998888999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 93 TYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
|||++++.+++.+.. |...+... ..+.|+++|+||+|+.+. +....+ ....+++.++.. ++++|||++|.
T Consensus 81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~~-~~~~~Sa~~~~---- 152 (167)
T 1c1y_A 81 VYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDE-RVVGKE-QGQNLARQWCNC-AFLESSAKSKI---- 152 (167)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGG-CCSCHH-HHHHHHHHTTSC-EEEECBTTTTB----
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhhCcCCCcEEEEEECcccccc-ccCCHH-HHHHHHHHccCC-cEEEecCCCCC----
Confidence 999999999888876 77666553 357999999999999765 333332 345566665333 89999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHh
Q 010254 171 FNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++++.|.+.+
T Consensus 153 --------gi~~l~~~l~~~i 165 (167)
T 1c1y_A 153 --------NVNEIFYDLVRQI 165 (167)
T ss_dssp --------SHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHH
Confidence 9999999988765
No 13
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.92 E-value=6.5e-25 Score=201.54 Aligned_cols=170 Identities=24% Similarity=0.309 Sum_probs=129.5
Q ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccC
Q 010254 10 GPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRAD 88 (514)
Q Consensus 10 ~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t-t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad 88 (514)
....+..+||+|+|++|||||||+|+|++..+...+.++.... +....+....+.+.||||+|.+.+......+++.+|
T Consensus 21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 3445678999999999999999999999998765544333221 122334456789999999999999888889999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc-----------cchhHhhhhHHHHHHHhccCcE
Q 010254 89 AVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETC 157 (514)
Q Consensus 89 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 157 (514)
++|+|||++++.+++.+...|+..+....++.|++||+||+|+.++. +.+.. +....+++.++. .++
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~-~~~ 178 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISY-EQGCAIAKQLGA-EIY 178 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCH-HHHHHHHHHHTC-SEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCH-HHHHHHHHHcCC-CEE
Confidence 99999999999999985456999999887889999999999997631 22333 234566777653 379
Q ss_pred EEcCccccccceecCCCCChhh-HHHHHHHHHHHhcC
Q 010254 158 IECSALKQIQVKCFNSPLQPSE-IVGVKRVVQEKLRE 193 (514)
Q Consensus 158 i~~Sa~~~~~~~~f~~~l~~~~-i~~L~~~i~~~~~~ 193 (514)
++|||++|. | ++++++.+.+.+..
T Consensus 179 ~e~SA~~g~------------g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 179 LEGSAFTSE------------KSIHSIFRTASMLCLN 203 (214)
T ss_dssp EECCTTTCH------------HHHHHHHHHHHHHHHC
T ss_pred EEeccCCCc------------ccHHHHHHHHHHHHhc
Confidence 999999999 8 99999998877643
No 14
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.92 E-value=8.4e-25 Score=196.01 Aligned_cols=168 Identities=21% Similarity=0.359 Sum_probs=131.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t-t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
.++.+||+|+|++|||||||+++|++..+...+.++.... .....+....+.+.+|||||++.+......+++.+|+++
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 3578999999999999999999999988755444333221 123344455778899999999998888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc-----------cchhHhhhhHHHHHHHhccCcEEEc
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIEC 160 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (514)
+|||++++.+++.+...|+..+....++.|+++|+||+|+.+.. +.+.. +....+++.++. .++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~-~~~~~~ 159 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY-PQGLAMAKEIGA-VKYLEC 159 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCH-HHHHHHHHHTTC-SEEEEC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCH-HHHHHHHHhcCC-cEEEEe
Confidence 99999999999998766999988876789999999999997641 11111 223445555542 379999
Q ss_pred CccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 161 SALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 161 Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
||++|. |++++++.+.+.+...
T Consensus 160 Sa~~g~------------gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 160 SALTQR------------GLKTVFDEAIRAVLCP 181 (186)
T ss_dssp CTTTCT------------THHHHHHHHHHHHSCC
T ss_pred cCCCcc------------CHHHHHHHHHHHHhcc
Confidence 999999 9999999999887654
No 15
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.92 E-value=1.8e-24 Score=192.41 Aligned_cols=165 Identities=21% Similarity=0.278 Sum_probs=129.0
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccC
Q 010254 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRAD 88 (514)
Q Consensus 11 ~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad 88 (514)
......+||+|+|++|||||||+|+|++..+.....++.+.+. ....+....+.+.+|||||.+.+......+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 3445679999999999999999999999887554444333222 22334455688999999999988888899999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccc
Q 010254 89 AVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQ 167 (514)
Q Consensus 89 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~ 167 (514)
++++|+|++++.+++.+.. |+..+.... .+.|+++|+||+|+.+. +....+ ....+++.++. ++++|||++|.
T Consensus 90 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~- 163 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSS-WLTDARNLTNPNTVIILIGNKADLEAQ-RDVTYE-EAKQFAEENGL--LFLEASAKTGE- 163 (179)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG-CCSCHH-HHHHHHHHTTC--EEEECCTTTCT-
T ss_pred EEEEEEeCcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECcccccc-cccCHH-HHHHHHHHcCC--EEEEEeCCCCC-
Confidence 9999999999999988875 888777654 57999999999999764 333332 34556666553 89999999999
Q ss_pred ceecCCCCChhhHHHHHHHHHHHhc
Q 010254 168 VKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 168 ~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.+.+.+.
T Consensus 164 -----------gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 164 -----------NVEDAFLEAAKKIY 177 (179)
T ss_dssp -----------THHHHHHHHHHHHC
T ss_pred -----------CHHHHHHHHHHHHh
Confidence 99999998887653
No 16
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.92 E-value=1.4e-24 Score=197.44 Aligned_cols=172 Identities=20% Similarity=0.359 Sum_probs=128.9
Q ss_pred cCCCCCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhh
Q 010254 6 AANSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEEL 84 (514)
Q Consensus 6 ~~~~~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 84 (514)
.+....+....+||+|+|++|||||||+|+|.+..+...+.++..... ....+....+.+.+|||||.+.+......++
T Consensus 15 ~~~~~~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 94 (201)
T 2gco_A 15 VPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSY 94 (201)
T ss_dssp CC-----CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGC
T ss_pred ccCCCCCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhc
Confidence 444555567789999999999999999999999887554433222211 2233444567899999999998888888899
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccccc-----------chhHhhhhHHHHHHHhc
Q 010254 85 RRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ-----------QVSLEQVMMPIMQQFRE 153 (514)
Q Consensus 85 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~~ 153 (514)
+.+|++++|||++++.+++.+...|...+....++.|+++|+||+|+..... .+. .+....+++.++.
T Consensus 95 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~ 173 (201)
T 2gco_A 95 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVR-SEEGRDMANRISA 173 (201)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCC-HHHHHHHHHHTTC
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCC-HHHHHHHHHhCCC
Confidence 9999999999999999999986669999988777899999999999976421 111 1223445555543
Q ss_pred cCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHh
Q 010254 154 IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 154 ~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
. ++++|||++|. |+++|++.|.+.+
T Consensus 174 ~-~~~~~SA~~g~------------gi~~l~~~i~~~~ 198 (201)
T 2gco_A 174 F-GYLECSAKTKE------------GVREVFEMATRAG 198 (201)
T ss_dssp S-EEEECCTTTCT------------THHHHHHHHHHHH
T ss_pred c-EEEEeeCCCCC------------CHHHHHHHHHHHH
Confidence 2 78999999999 9999999887654
No 17
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.92 E-value=1e-24 Score=194.07 Aligned_cols=158 Identities=16% Similarity=0.181 Sum_probs=118.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t-t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
+..+||+|+|++|||||||+|+|+++.+.. +.++.... .....+....+.+.+|||||++. ..+++++|++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 567999999999999999999999998754 33322211 12233444567899999999876 467899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhc----CCCCcEEEEEecccCccc-ccchhHhhhhHHHHHHHhccCcEEEcCcccccc
Q 010254 93 TYACDRPETLDELSTFWLPELRRL----EVKVPVIVVGCKLDLRDE-NQQVSLEQVMMPIMQQFREIETCIECSALKQIQ 167 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~----~~~~pvilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~ 167 (514)
|||++++.+++.+.. |+.++... .++.|+++|+||+|+... .+.+..+ ....+++.++.. ++++|||++|.
T Consensus 79 v~D~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~-~~~~~~~~~~~~-~~~~~Sa~~~~- 154 (178)
T 2iwr_A 79 VFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDA-RARALXADMKRC-SYYETXATYGL- 154 (178)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHH-HHHHHHHHHSSE-EEEEEBTTTTB-
T ss_pred EEECcCHHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHH-HHHHHHHhhcCC-eEEEEeccccC-
Confidence 999999999998876 66555443 247899999999999532 1333333 345566665433 89999999999
Q ss_pred ceecCCCCChhhHHHHHHHHHHHhc
Q 010254 168 VKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 168 ~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++.+.+.+.+.
T Consensus 155 -----------~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 155 -----------NVDRVFQEVAQKVV 168 (178)
T ss_dssp -----------THHHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHH
Confidence 99999988877653
No 18
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.92 E-value=8.7e-25 Score=195.78 Aligned_cols=165 Identities=28% Similarity=0.405 Sum_probs=127.5
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-cccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~-tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
....+||+|+|++|||||||+|+|++..+...+.++... .+....+....+.+.+|||||.+.+......+++.+|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 456799999999999999999999998875443332221 1223344456789999999999988888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc-----------cchhHhhhhHHHHHHHhccCcEEEc
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIEC 160 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (514)
+|||++++.+++.+...|+..++...++.|+++|+||+|+.++. +.+.. +....+++.++.. ++++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~-~~~e~ 161 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSY-DQGANMAKQIGAA-TYIEC 161 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCH-HHHHHHHHHHTCS-EEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCH-HHHHHHHHHcCCc-EEEEe
Confidence 99999999999998556999888877789999999999997531 12222 2345566666533 89999
Q ss_pred Ccc-ccccceecCCCCChhhHHHHHHHHHHHh
Q 010254 161 SAL-KQIQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 161 Sa~-~~~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
||+ ++. |++++++.+.+.+
T Consensus 162 Sa~~~~~------------gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 162 SALQSEN------------SVRDIFHVATLAC 181 (184)
T ss_dssp BTTTBHH------------HHHHHHHHHHHHH
T ss_pred eecCCCc------------CHHHHHHHHHHHH
Confidence 999 688 9999998887654
No 19
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.92 E-value=1.6e-24 Score=191.07 Aligned_cols=163 Identities=20% Similarity=0.260 Sum_probs=128.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
+..+||+|+|++|||||||+|+|+++.+.....+..+.+. ....+....+.+.+|||||.+.+......+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 4679999999999999999999999887554443333222 22334455789999999999999888899999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 92 LTYACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
+|+|++++.+++.+.. |+..+... .++.|+++|+||+|+.+. +....+ ....++..++. ++++|||++|.
T Consensus 84 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~g~---- 154 (170)
T 1r2q_A 84 VVYDITNEESFARAKN-WVKELQRQASPNIVIALSGNKADLANK-RAVDFQ-EAQSYADDNSL--LFMETSAKTSM---- 154 (170)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGG-CCSCHH-HHHHHHHHTTC--EEEECCTTTCT----
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCccc-cccCHH-HHHHHHHHcCC--eEEEEeCCCCC----
Confidence 9999999999988875 77777664 457999999999999764 333332 33455555543 89999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhcC
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
|++++++.|.+.+++
T Consensus 155 --------gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 155 --------NVNEIFMAIAKKLPK 169 (170)
T ss_dssp --------THHHHHHHHHHTSCC
T ss_pred --------CHHHHHHHHHHHHhh
Confidence 999999999887653
No 20
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.92 E-value=2.6e-24 Score=188.94 Aligned_cols=162 Identities=21% Similarity=0.300 Sum_probs=124.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
|+.+||+|+|++|||||||+|+|+++.+.....+...... ....+......+.+|||||.+.+......+++.+|++++
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 4579999999999999999999999886554433222111 223344456779999999999998888899999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 93 TYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
|||++++.+++.+.. |...+.... .+.|+++|+||+|+.+. +....+ ....+++.++. ++++|||++|.
T Consensus 81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~---- 151 (167)
T 1kao_A 81 VYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESE-REVSSS-EGRALAEEWGC--PFMETSAKSKT---- 151 (167)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGG-CCSCHH-HHHHHHHHHTS--CEEEECTTCHH----
T ss_pred EEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCccccc-ccCCHH-HHHHHHHHhCC--CEEEecCCCCc----
Confidence 999999999888876 666555432 47999999999999764 333322 33556666654 89999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhc
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.+.
T Consensus 152 --------gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 152 --------MVDELFAEIVRQMN 165 (167)
T ss_dssp --------HHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHh
Confidence 99999999887653
No 21
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.92 E-value=2.3e-24 Score=189.54 Aligned_cols=162 Identities=22% Similarity=0.303 Sum_probs=123.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
+..+||+|+|++|||||||+|+|+++.+.....++..... ....+....+.+.+|||||.+++......+++.+|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 4679999999999999999999999886544433222211 223344556789999999999988888999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 93 TYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
|||++++.+++.+.. |+..+.... .++|+++|+||+|+.+. +....+ ....+++.++. +++++||++|.
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~---- 152 (168)
T 1u8z_A 82 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK-RQVSVE-EAKNRADQWNV--NYVETSAKTRA---- 152 (168)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGG-CCSCHH-HHHHHHHHHTC--EEEECCTTTCT----
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECcccccc-CccCHH-HHHHHHHHcCC--eEEEeCCCCCC----
Confidence 999999999988875 777776653 37999999999999765 333333 34556666554 89999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhc
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++.+.+.+.+.
T Consensus 153 --------gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 153 --------NVDKVFFDLMREIR 166 (168)
T ss_dssp --------THHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHH
Confidence 99999999887653
No 22
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.92 E-value=1.9e-24 Score=194.38 Aligned_cols=165 Identities=21% Similarity=0.266 Sum_probs=130.4
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccC
Q 010254 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRAD 88 (514)
Q Consensus 11 ~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad 88 (514)
......+||+|+|++|||||||+|+|++..+.....+..+.+. ....+....+.+.+|||||.+.+......+++.+|
T Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 96 (189)
T 2gf9_A 17 RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAM 96 (189)
T ss_dssp TTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCS
T ss_pred cccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCC
Confidence 3345679999999999999999999999987655444443322 22233455789999999999988888888999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccc
Q 010254 89 AVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQ 167 (514)
Q Consensus 89 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~ 167 (514)
++++|||++++.+++.+.. |+..+.... .+.|+++|+||+|+... +.... +....+++.++. ++++|||++|.
T Consensus 97 ~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~--~~~~~Sa~~g~- 170 (189)
T 2gf9_A 97 GFLLMYDIANQESFAAVQD-WATQIKTYSWDNAQVILVGNKCDLEDE-RVVPA-EDGRRLADDLGF--EFFEASAKENI- 170 (189)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG-CCSCH-HHHHHHHHHHTC--EEEECBTTTTB-
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccccc-cCCCH-HHHHHHHHHcCC--eEEEEECCCCC-
Confidence 9999999999999988875 888887754 57999999999999765 33332 334566777664 89999999999
Q ss_pred ceecCCCCChhhHHHHHHHHHHHhc
Q 010254 168 VKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 168 ~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.+.
T Consensus 171 -----------gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 171 -----------NVKQVFERLVDVIC 184 (189)
T ss_dssp -----------SHHHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHH
Confidence 99999999887664
No 23
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.7e-24 Score=195.33 Aligned_cols=164 Identities=20% Similarity=0.288 Sum_probs=130.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
...+||+|+|++|||||||+|+|++..+...+.+..+.+. ....+......+.+|||||.+.+......+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 5679999999999999999999999987554444333322 22334456789999999999999888899999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
+|||++++.+++.+.. |+..+.... ++.|+++|+||+|+.+. +....+ ....+++.++. ++++|||+++.
T Consensus 101 lV~d~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~NK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~~~Sa~~~~---- 171 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKK-WVKELKEHGPENIVMAIAGNKCDLSDI-REVPLK-DAKEYAESIGA--IVVETSAKNAI---- 171 (192)
T ss_dssp EEEETTCTHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGG-CCSCHH-HHHHHHHTTTC--EEEECBTTTTB----
T ss_pred EEEeCCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECcccccc-cccCHH-HHHHHHHHcCC--EEEEEeCCCCc----
Confidence 9999999999998875 888887764 47999999999999754 333333 34556666553 89999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhcCc
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
|++++++.|.+.+.+.
T Consensus 172 --------gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 172 --------NIEELFQGISRQIPPL 187 (192)
T ss_dssp --------SHHHHHHHHHHTCC--
T ss_pred --------CHHHHHHHHHHHHHhh
Confidence 9999999999887654
No 24
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.92 E-value=9.6e-25 Score=198.40 Aligned_cols=170 Identities=24% Similarity=0.354 Sum_probs=122.0
Q ss_pred CCCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhcc
Q 010254 9 SGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRA 87 (514)
Q Consensus 9 ~~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a 87 (514)
.+......+||+|+|++|||||||+|+|++..+...+.++..... ....+....+.+.+|||||.+.+......+++++
T Consensus 13 ~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (201)
T 2q3h_A 13 AGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT 92 (201)
T ss_dssp -------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred cCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence 444557789999999999999999999999886544433222111 1223334457888999999999888888899999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc-----------cchhHhhhhHHHHHHHhccCc
Q 010254 88 DAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIET 156 (514)
Q Consensus 88 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 156 (514)
|++++|||++++.++..+...|+..+....++.|+++|+||+|+.... +.+.. +....+++.++. .+
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~-~~ 170 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPE-EAAKLLAEEIKA-AS 170 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCH-HHHHHHHHHHTC-SE
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCH-HHHHHHHHhcCC-cE
Confidence 999999999999999998756999888876789999999999997631 12222 234556666543 27
Q ss_pred EEEcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 157 CIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 157 ~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
+++|||++|. |++++++.|.+.+.
T Consensus 171 ~~~~Sa~~g~------------gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 171 YIECSALTQK------------NLKEVFDAAIVAGI 194 (201)
T ss_dssp EEECCTTTCT------------THHHHHHHHHHHHH
T ss_pred EEEEecCCCC------------CHHHHHHHHHHHHh
Confidence 9999999999 99999998887654
No 25
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.92 E-value=2.2e-24 Score=190.25 Aligned_cols=162 Identities=22% Similarity=0.323 Sum_probs=128.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
+..+||+|+|++|||||||+|+|+++.+...+.+..+.+. ....+......+.+|||||++.+......+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 4579999999999999999999999987554444333222 23344455688999999999998888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 92 LTYACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
+|+|++++.+++.+.. |+..+... .++.|+++|+||+|+.+. +.... +....+++.++. +++++||++|.
T Consensus 84 ~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~iilv~nK~Dl~~~-~~v~~-~~~~~~~~~~~~--~~~~~Sa~~~~---- 154 (170)
T 1z0j_A 84 IVYDITKEETFSTLKN-WVRELRQHGPPSIVVAIAGNKCDLTDV-REVME-RDAKDYADSIHA--IFVETSAKNAI---- 154 (170)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHSCTTSEEEEEEECTTCGGG-CCSCH-HHHHHHHHHTTC--EEEECBTTTTB----
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECCccccc-cccCH-HHHHHHHHHcCC--EEEEEeCCCCc----
Confidence 9999999999888865 88888775 357899999999999765 33322 234556666553 89999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhc
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.++
T Consensus 155 --------~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 155 --------NINELFIEISRRIP 168 (170)
T ss_dssp --------SHHHHHHHHHHHCC
T ss_pred --------CHHHHHHHHHHHHh
Confidence 99999999988764
No 26
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.92 E-value=3.5e-24 Score=191.08 Aligned_cols=165 Identities=19% Similarity=0.237 Sum_probs=128.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
.+..+||+|+|++|||||||+|+|++..+.....+..+.+. ....+....+.+.+|||||.+.+......+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 45679999999999999999999999887554433333222 2223444577999999999999988889999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccce
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVK 169 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~ 169 (514)
++|||++++.+++.+.. |+..+.... ++.|+++|+||+|+.+. +....+ ....+++.++. ++++|||++|.
T Consensus 89 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~i~v~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~g~--- 160 (181)
T 2efe_B 89 IIVFDVTNQASFERAKK-WVQELQAQGNPNMVMALAGNKSDLLDA-RKVTAE-DAQTYAQENGL--FFMETSAKTAT--- 160 (181)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECTTCTTT-CCSCHH-HHHHHHHHTTC--EEEECCSSSCT---
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCccccc-ccCCHH-HHHHHHHHcCC--EEEEEECCCCC---
Confidence 99999999999888875 887777653 57899999999999765 333332 34556655543 79999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 170 CFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 170 ~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
|++++++.|.+.+...
T Consensus 161 ---------gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 161 ---------NVKEIFYEIARRLPRV 176 (181)
T ss_dssp ---------THHHHHHHHHHTCC--
T ss_pred ---------CHHHHHHHHHHHHHhc
Confidence 9999999999877653
No 27
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.92 E-value=7.4e-25 Score=195.69 Aligned_cols=165 Identities=24% Similarity=0.365 Sum_probs=120.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-cccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~-tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
+..+||+|+|++|||||||+|+|+++.+...+.++... ......+....+.+.+|||||++++......+++.+|++++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 45799999999999999999999998865444332221 11223344446778899999999988888889999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccch---------hHhhhhHHHHHHHhccCcEEEcCcc
Q 010254 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQV---------SLEQVMMPIMQQFREIETCIECSAL 163 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~Sa~ 163 (514)
|||++++.+++.+...|+..++...++.|+++|+||+|+.+. +.. ...+....+++.++. .++++|||+
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~ 163 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD-KQFFIDHPGAVPITTVQGEELKKLIGA-PAYIECSSK 163 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC-HHHHHHC--CCCCCHHHHHHHHHHHTC-SEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcC-cccccccccCCCCCHHHHHHHHHHcCC-CEEEEEECC
Confidence 999999999999876699999887668999999999999765 221 012334556666653 379999999
Q ss_pred ccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 164 KQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 164 ~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
+|. |++++++.+.+.+.
T Consensus 164 ~~~------------gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 164 SQE------------NVKGVFDAAIRVVL 180 (182)
T ss_dssp TCT------------THHHHHHHHHHHHS
T ss_pred CCC------------CHHHHHHHHHHHHh
Confidence 999 99999999887653
No 28
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.92 E-value=1.4e-24 Score=197.86 Aligned_cols=165 Identities=28% Similarity=0.405 Sum_probs=127.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-cccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~-tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
....+||+|+|++|||||||+|+|++..+...+.++... .+....+....+.+.||||||.+.+......+++.+|++|
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 456799999999999999999999998875443332221 1122334455789999999999988888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc-----------cchhHhhhhHHHHHHHhccCcEEEc
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIEC 160 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (514)
+|||++++.+++.+...|+..++...++.|+++|+||+|+..+. +.+.. +....+++.++.. ++++|
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~-~~~e~ 182 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSY-DQGANMAKQIGAA-TYIEC 182 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCH-HHHHHHHHHHTCS-EEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCH-HHHHHHHHHcCCC-EEEEe
Confidence 99999999999988556999988876789999999999997531 12222 2345666666533 79999
Q ss_pred Ccc-ccccceecCCCCChhhHHHHHHHHHHHh
Q 010254 161 SAL-KQIQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 161 Sa~-~~~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
||+ ++. |++++++.+.+.+
T Consensus 183 SAk~~~~------------gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 183 SALQSEN------------SVRDIFHVATLAC 202 (205)
T ss_dssp CTTTCHH------------HHHHHHHHHHHHH
T ss_pred eeccCCc------------CHHHHHHHHHHHH
Confidence 999 688 9999998887643
No 29
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=198.02 Aligned_cols=170 Identities=20% Similarity=0.209 Sum_probs=125.3
Q ss_pred CCCCCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhh
Q 010254 7 ANSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELR 85 (514)
Q Consensus 7 ~~~~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 85 (514)
..++...+..+||+|+|++|||||||+|+|++..+...+.++..... ....+....+.+.||||||.+.+......+++
T Consensus 15 ~~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 94 (201)
T 3oes_A 15 YFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFII 94 (201)
T ss_dssp --------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTT
T ss_pred CCCCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHh
Confidence 34555667889999999999999999999999987654443222111 22233355788999999999988888889999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcc
Q 010254 86 RADAVVLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL 163 (514)
Q Consensus 86 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 163 (514)
.+|++++|||++++.+++.+.. |+..+.... .++|+++|+||+|+... +....+ ....++..++. ++++|||+
T Consensus 95 ~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~~~Sa~ 169 (201)
T 3oes_A 95 GVHGYVLVYSVTSLHSFQVIES-LYQKLHEGHGKTRVPVVLVGNKADLSPE-REVQAV-EGKKLAESWGA--TFMESSAR 169 (201)
T ss_dssp TCCEEEEEEETTCHHHHHHHHH-HHHHHHC-----CCCEEEEEECTTCGGG-CCSCHH-HHHHHHHHHTC--EEEECCTT
T ss_pred cCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccCccc-cccCHH-HHHHHHHHhCC--eEEEEeCC
Confidence 9999999999999999998885 888876652 47899999999999765 333333 34566666664 89999999
Q ss_pred ccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 164 KQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 164 ~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
+|. |++++++.|.+.+..
T Consensus 170 ~~~------------~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 170 ENQ------------LTQGIFTKVIQEIAR 187 (201)
T ss_dssp CHH------------HHHHHHHHHHHHHHH
T ss_pred CCC------------CHHHHHHHHHHHHHh
Confidence 999 999999998887653
No 30
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=2.4e-24 Score=189.85 Aligned_cols=162 Identities=22% Similarity=0.305 Sum_probs=126.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
..+||+|+|++|||||||+|+|++..+.....+..+.+. ....+....+.+.+|||||.+.+......+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 568999999999999999999999887554443333221 223344556799999999999998888999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccc--cchhHhhhhHHHHHHHhccCcEEEcCccccccce
Q 010254 93 TYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDEN--QQVSLEQVMMPIMQQFREIETCIECSALKQIQVK 169 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~ 169 (514)
|+|++++.++..+.. |+..+.... ++.|+++|+||+|+.... +... .+....++..++. ++++|||++|.
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~-~~~~~~~~~~~~~--~~~~~Sa~~~~--- 154 (170)
T 1ek0_A 82 VYDVTKPQSFIKARH-WVKELHEQASKDIIIALVGNKIDXLQEGGERKVA-REEGEKLAEEKGL--LFFETSAKTGE--- 154 (170)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSC-HHHHHHHHHHHTC--EEEECCTTTCT---
T ss_pred EEecCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCCccccccccCCC-HHHHHHHHHHcCC--EEEEEeCCCCC---
Confidence 999999999988876 877776653 579999999999997642 2222 2233556666554 89999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHHhc
Q 010254 170 CFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 170 ~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.++
T Consensus 155 ---------gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 155 ---------NVNDVFLGIGEKIP 168 (170)
T ss_dssp ---------THHHHHHHHHTTSC
T ss_pred ---------CHHHHHHHHHHHHh
Confidence 99999999987664
No 31
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.92 E-value=1.8e-24 Score=196.64 Aligned_cols=167 Identities=18% Similarity=0.257 Sum_probs=124.8
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccC
Q 010254 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRAD 88 (514)
Q Consensus 11 ~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad 88 (514)
+.....+||+|+|++|||||||+|+|++..+.....++.+... ....+....+.+.+|||||.+++......+++.+|
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN 103 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence 3345679999999999999999999999886544333222111 22233344579999999999999888899999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccc
Q 010254 89 AVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQ 167 (514)
Q Consensus 89 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~ 167 (514)
++|+|||++++.+++.+.. |+..+.... .++|++||+||+|+... +.+..+ ....+++.++. .++++|||++|.
T Consensus 104 ~iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~NK~Dl~~~-~~v~~~-~~~~~~~~~~~-~~~~~~SA~~g~- 178 (201)
T 2hup_A 104 GAILAYDITKRSSFLSVPH-WIEDVRKYAGSNIVQLLIGNKSDLSEL-REVSLA-EAQSLAEHYDI-LCAIETSAKDSS- 178 (201)
T ss_dssp EEEEEEETTBHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG-CCSCHH-HHHHHHHHTTC-SEEEECBTTTTB-
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCccccc-cccCHH-HHHHHHHHcCC-CEEEEEeCCCCC-
Confidence 9999999999999988875 888887654 57999999999999764 333333 34556666542 378999999999
Q ss_pred ceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 168 VKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 168 ~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
|++++++.|.+.+..
T Consensus 179 -----------gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 179 -----------NVEEAFLRVATELIM 193 (201)
T ss_dssp -----------SHHHHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHHH
Confidence 999999998877653
No 32
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.92 E-value=1.6e-24 Score=190.41 Aligned_cols=158 Identities=22% Similarity=0.217 Sum_probs=106.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
.+||+|+|++|||||||+|+|.+..+... ....+++ ....+....+.+.+|||||.+.+......+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE--AEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC------------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC--CCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999998774322 2233333 2334456678899999999999888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceec
Q 010254 94 YACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCF 171 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f 171 (514)
||++++.+++.+.. |...+... .+++|+++|+||+|+.+. +....+ ....++..++. ++++|||++|.
T Consensus 80 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~----- 149 (166)
T 3q72_A 80 YSVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRS-REVSVD-EGRACAVVFDC--KFIETSAALHH----- 149 (166)
T ss_dssp EETTCHHHHHHHHH-HHHHHHHCC---CCCEEEEEECTTCCSS-CCSCHH-HHHHHHHHTTC--EEEECBGGGTB-----
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccccccc-cccCHH-HHHHHHHHhCC--cEEEeccCCCC-----
Confidence 99999999998886 77766654 257999999999999865 333333 23455656553 89999999999
Q ss_pred CCCCChhhHHHHHHHHHHHhc
Q 010254 172 NSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 172 ~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.+.+.+.
T Consensus 150 -------gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 150 -------NVQALFEGVVRQIR 163 (166)
T ss_dssp -------SHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHH
Confidence 99999998887653
No 33
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.92 E-value=2.7e-24 Score=193.06 Aligned_cols=161 Identities=25% Similarity=0.319 Sum_probs=123.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
...+||+|+|++|||||||+|+|+++.+...+.++..... ....+....+.+.||||||++.+... ..+++.+|++++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~il 97 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLV 97 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEE
Confidence 5679999999999999999999999987655444333221 22334455788999999999887764 678999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC----CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCc-ccccc
Q 010254 93 TYACDRPETLDELSTFWLPELRRLE----VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSA-LKQIQ 167 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa-~~~~~ 167 (514)
|||++++.+++.+.. |+..+.... .+.|+++|+||+|+... +.+..+ ....+++.++. ++++||| ++|.
T Consensus 98 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~e~Sa~~~g~- 171 (187)
T 3c5c_A 98 VYSVDSRQSFDSSSS-YLELLALHAKETQRSIPALLLGNKLDMAQY-RQVTKA-EGVALAGRFGC--LFFEVSACLDFE- 171 (187)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHHHHCCCCCEEEEEECGGGGGG-CSSCHH-HHHHHHHHHTC--EEEECCSSSCSH-
T ss_pred EEECCCHHHHHHHHH-HHHHHHHHhhccCCCCCEEEEEECcchhhc-CccCHH-HHHHHHHHcCC--cEEEEeecCccc-
Confidence 999999999999885 888877652 58999999999999764 334333 34567777764 8999999 8999
Q ss_pred ceecCCCCChhhHHHHHHHHHHHhc
Q 010254 168 VKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 168 ~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.+.
T Consensus 172 -----------gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 172 -----------HVQHVFHEAVREAR 185 (187)
T ss_dssp -----------HHHHHHHHHHHHHH
T ss_pred -----------cHHHHHHHHHHHHh
Confidence 99999998887653
No 34
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.92 E-value=1.7e-24 Score=193.01 Aligned_cols=163 Identities=21% Similarity=0.270 Sum_probs=125.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
....+||+|+|++|||||||+|+|++..+.....+..+... ....+....+.+.+|||||.+.+......+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 34679999999999999999999999886544333222111 1223334458899999999998888888899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
++|||++++.++..+.. |+..+....++.|+++|+||+|+.+. +....+ ....++..++. ++++|||++|.
T Consensus 86 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~---- 156 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKR-WLHEINQNCDDVCRILVGNKNDDPER-KVVETE-DAYKFAGQMGI--QLFETSAKENV---- 156 (181)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHCTTSEEEEEEECTTCGGG-CCSCHH-HHHHHHHHHTC--CEEECBTTTTB----
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECCCCchh-cccCHH-HHHHHHHHcCC--eEEEEECCCCC----
Confidence 99999999999998875 88888887778999999999998765 333322 34556666654 89999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhc
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.+.
T Consensus 157 --------gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 157 --------NVEEMFNCITELVL 170 (181)
T ss_dssp --------SHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHH
Confidence 99999998887654
No 35
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.92 E-value=4.8e-24 Score=194.48 Aligned_cols=167 Identities=22% Similarity=0.310 Sum_probs=128.4
Q ss_pred CCCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhcc
Q 010254 9 SGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRA 87 (514)
Q Consensus 9 ~~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a 87 (514)
++...+..++|+|+|++|||||||+|+|++..+...+.++..... ....+....+.+.+|||||.+.+......+++.+
T Consensus 7 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (206)
T 2bov_A 7 KGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 86 (206)
T ss_dssp ----CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred cCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhC
Confidence 344456789999999999999999999999886554444332221 2233344467899999999999988889999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccc
Q 010254 88 DAVVLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (514)
Q Consensus 88 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~ 165 (514)
|++++|||++++.++..+.. |+..+.... .++|+++|+||+|+.+. +....+ ....++..++. +++++||++|
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~g 161 (206)
T 2bov_A 87 EGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK-RQVSVE-EAKNRAEQWNV--NYVETSAKTR 161 (206)
T ss_dssp SEEEEEEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTCGGG-CCSCHH-HHHHHHHHHTC--EEEEECTTTC
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccCcccc-ccccHH-HHHHHHHHhCC--eEEEEeCCCC
Confidence 99999999999999988875 888777654 37999999999999765 333333 34556666654 8999999999
Q ss_pred ccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 166 IQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 166 ~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
. |++++++.|.+.+.
T Consensus 162 ~------------gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 162 A------------NVDKVFFDLMREIR 176 (206)
T ss_dssp T------------THHHHHHHHHHHHH
T ss_pred C------------CHHHHHHHHHHHHH
Confidence 9 99999988887654
No 36
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.92 E-value=3.5e-24 Score=192.02 Aligned_cols=164 Identities=21% Similarity=0.303 Sum_probs=125.9
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
..+..+||+|+|++|||||||+|+|++..+...+.++..... ....+....+.+.+|||||.+.+......+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 346789999999999999999999999886544443222211 2223344457899999999999988889999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccc
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~ 168 (514)
++|||++++.+++.+.. |+..+.... .++|+++|+||+|+.+. +....+ ....+++.++. ++++|||+++.
T Consensus 94 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~-- 166 (187)
T 2a9k_A 94 LCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK-RQVSVE-EAKNRAEQWNV--NYVETSAKTRA-- 166 (187)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHHCCTTCCEEEEEECGGGGGG-CCSCHH-HHHHHHHHTTC--EEEECCTTTCT--
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc-CccCHH-HHHHHHHHcCC--eEEEeCCCCCC--
Confidence 99999999999888875 777776653 37999999999999765 333333 34556666554 89999999999
Q ss_pred eecCCCCChhhHHHHHHHHHHHhc
Q 010254 169 KCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 169 ~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.+.
T Consensus 167 ----------gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 167 ----------NVDKVFFDLMREIR 180 (187)
T ss_dssp ----------THHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHH
Confidence 99999999887654
No 37
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.92 E-value=2.6e-24 Score=197.32 Aligned_cols=167 Identities=23% Similarity=0.357 Sum_probs=130.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t-t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
+..+||+|+|++|||||||+++|+++.+...+.++.... .....+....+.+.+|||||++.+...+..+++.+|++|+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 467999999999999999999999988755444333221 1223344556899999999999988888889999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccch-------hHhhhhHHHHHHHhccCcEEEcCcccc
Q 010254 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQV-------SLEQVMMPIMQQFREIETCIECSALKQ 165 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~Sa~~~ 165 (514)
|||++++.+++.+...|+..++...++.|++||+||+|+... +.. ...+....+++.++. .++++|||++|
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~g 164 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDD-KGYLADHTNVITSTQGEELRKQIGA-AAYIECSSKTQ 164 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC-HHHHHTCSSCCCHHHHHHHHHHHTC-SEEEECCTTTC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhC-ccccccccCCCCHHHHHHHHHHcCC-ceEEEccCCCC
Confidence 999999999999875699999887778999999999999765 221 012334556666653 27999999999
Q ss_pred ccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 166 IQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 166 ~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
. |++++++.|.+.+...
T Consensus 165 ~------------gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 165 Q------------NVKAVFDTAIKVVLQP 181 (212)
T ss_dssp T------------THHHHHHHHHHHHHCC
T ss_pred C------------CHHHHHHHHHHHHhhh
Confidence 9 9999999998877644
No 38
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=199.57 Aligned_cols=167 Identities=26% Similarity=0.402 Sum_probs=110.8
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t-t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
.....+||+|+|++|||||||+|+|+++.+...+.++.... .....+....+.+.||||||.+.+......+++.+|++
T Consensus 30 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 30 PGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp --CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 34567999999999999999999999988654443322111 12233445567899999999998888888899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccccc-----------chhHhhhhHHHHHHHhccCcEEE
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ-----------QVSLEQVMMPIMQQFREIETCIE 159 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~~~~~~i~ 159 (514)
++|||++++.+++.+...|+..+....+++|+++|+||+|+..... .+.. +....+++.++. .++++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~-~~~~~ 187 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTY-HRGQEMARSVGA-VAYLE 187 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCH-HHHHHHHHHTTC-SEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccH-HHHHHHHHhcCC-CEEEE
Confidence 9999999999999987669999988777899999999999976521 1111 233455656543 37999
Q ss_pred cCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 160 CSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 160 ~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|||++|. |++++++.|.+.+.
T Consensus 188 ~SA~~g~------------gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 188 CSARLHD------------NVHAVFQEAAEVAL 208 (214)
T ss_dssp CBTTTTB------------SHHHHHHHHHHHHH
T ss_pred ecCCCCC------------CHHHHHHHHHHHHH
Confidence 9999999 99999999887654
No 39
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.92 E-value=5.7e-24 Score=190.15 Aligned_cols=165 Identities=18% Similarity=0.283 Sum_probs=127.9
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCE
Q 010254 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (514)
Q Consensus 11 ~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ 89 (514)
......+||+|+|++|||||||+|+|+++.+.....++..... ....+....+.+.+|||||.+.+......+++.+|+
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 3345689999999999999999999999876555443322221 222333446678889999999998888999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcc-ccc
Q 010254 90 VVLTYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSAL-KQI 166 (514)
Q Consensus 90 ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~-~~~ 166 (514)
+++|||++++.+++.+.. |...+... ..++|+++|+||+|+.+. +.+..+ ....+++.++. ++++|||+ ++.
T Consensus 93 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~~~Sa~~~~~ 167 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHL-RKVTRD-QGKEMATKYNI--PYIETSAKDPPL 167 (183)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTT-CCSCHH-HHHHHHHHHTC--CEEEEBCSSSCB
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCCchhc-cCcCHH-HHHHHHHHhCC--eEEEeccCCCCC
Confidence 999999999999998876 77776542 357999999999999764 334333 34667777764 89999999 999
Q ss_pred cceecCCCCChhhHHHHHHHHHHHhc
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.+.
T Consensus 168 ------------~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 168 ------------NVDKTFHDLVRVIR 181 (183)
T ss_dssp ------------SHHHHHHHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHh
Confidence 99999998887653
No 40
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=3.6e-24 Score=189.10 Aligned_cols=162 Identities=20% Similarity=0.274 Sum_probs=125.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
+.+||+|+|++|||||||+|+|+++.+...+.++.+.++ .........+.+.+|||||.+++......+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 468999999999999999999999887655554444333 2223344567899999999999988888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 94 YACDRPETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
+|++++.+++.+.. |...+.+.. ++.|+++|+||+|+.+. +....+ ....+...++. ++++|||++|.
T Consensus 82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~pii~v~nK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~~~Sa~~~~---- 152 (172)
T 2erx_A 82 YSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPS-REVQSS-EAEALARTWKC--AFMETSAKLNH---- 152 (172)
T ss_dssp EETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGG-CCSCHH-HHHHHHHHHTC--EEEECBTTTTB----
T ss_pred EECcCHHHHHHHHH-HHHHHHHHhCCCCCCCEEEEEEccccccc-cccCHH-HHHHHHHHhCC--eEEEecCCCCc----
Confidence 99999988888775 666665532 47999999999999765 333222 33455555553 89999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhcC
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
|++++++.|.+.+..
T Consensus 153 --------gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 153 --------NVKELFQELLNLEKR 167 (172)
T ss_dssp --------SHHHHHHHHHHTCCS
T ss_pred --------CHHHHHHHHHHHHhh
Confidence 999999999887653
No 41
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.92 E-value=4.6e-24 Score=189.15 Aligned_cols=160 Identities=24% Similarity=0.230 Sum_probs=114.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc---cccceeCCeeEEEEEeCCCCcc--chhhHHHhhhccC
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR---LPEDFYPDRVPITIIDTPSSVE--DRGKLGEELRRAD 88 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt---~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~ad 88 (514)
+..+||+|+|++|||||||+|+|++..+.....+ .+++ ....+....+.+.+|||||.+. +......+++.+|
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 79 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ--LGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGS 79 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCC--SSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCS
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCc--cccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCC
Confidence 3579999999999999999999999886443332 2222 2223444567899999999987 4455667889999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccc
Q 010254 89 AVVLTYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (514)
Q Consensus 89 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~ 166 (514)
++++|||++++.+++.+.. |...+... ..++|+++|+||+|+.+. +....+ ....++..++. ++++|||++|.
T Consensus 80 ~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~piilv~NK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~~~Sa~~g~ 154 (175)
T 2nzj_A 80 AYVIVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVGNKADLARC-REVSVE-EGRACAVVFDC--KFIETSATLQH 154 (175)
T ss_dssp EEEEEEETTCHHHHHHHHH-HHHHHHHCC----CCEEEEEECTTCTTT-CCSCHH-HHHHHHHHHTS--EEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhhccCCCCEEEEEEChhhccc-cccCHH-HHHHHHHHcCC--eEEEEecCCCC
Confidence 9999999999999998875 87777764 247999999999999765 333333 33455556553 89999999999
Q ss_pred cceecCCCCChhhHHHHHHHHHHHhc
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.+.
T Consensus 155 ------------gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 155 ------------NVAELFEGVVRQLR 168 (175)
T ss_dssp ------------SHHHHHHHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHH
Confidence 99999999887654
No 42
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.92 E-value=3.6e-24 Score=192.65 Aligned_cols=165 Identities=23% Similarity=0.330 Sum_probs=123.0
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccch-hhHHHhhhcc
Q 010254 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDR-GKLGEELRRA 87 (514)
Q Consensus 11 ~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~a 87 (514)
...++.+||+|+|++|||||||+|+|+++.+.....+..+... ....+....+.+.+|||||.+.+. .....+++.+
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV 94 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence 3346779999999999999999999999887554443333222 222333446899999999998887 7788899999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccc
Q 010254 88 DAVVLTYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (514)
Q Consensus 88 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~ 165 (514)
|++|+|||++++.+++.+.. |+..+... ..++|+++|+||+|+.+. +....+ ....++..++. ++++|||+++
T Consensus 95 d~iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~~~Sa~~~ 169 (189)
T 1z06_A 95 HAVVFVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSA-IQVPTD-LAQKFADTHSM--PLFETSAKNP 169 (189)
T ss_dssp CEEEEEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGG-CCSCHH-HHHHHHHHTTC--CEEECCSSSG
T ss_pred CEEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc-ceeCHH-HHHHHHHHcCC--EEEEEeCCcC
Confidence 99999999999999988876 88877665 357999999999999765 333322 34556666553 8999999999
Q ss_pred ---ccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 166 ---IQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 166 ---~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
. |++++++.|.+.++
T Consensus 170 ~~~~------------~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 170 NDND------------HVEAIFMTLAHKLK 187 (189)
T ss_dssp GGGS------------CHHHHHHHHC----
T ss_pred Cccc------------CHHHHHHHHHHHHh
Confidence 7 88888888876654
No 43
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.92 E-value=3e-24 Score=194.06 Aligned_cols=165 Identities=22% Similarity=0.221 Sum_probs=123.2
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchh-hHHHhhhccC
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRG-KLGEELRRAD 88 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~ad 88 (514)
.....+||+|+|++|||||||+|+|++..+.....+..+..+ ....+....+.+.+|||+|.+.+.. ....+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 345679999999999999999999987553222211111111 2223445567899999999987664 5677889999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccc
Q 010254 89 AVVLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (514)
Q Consensus 89 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~ 166 (514)
++|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+... +.+..+ ....+++.++. ++++|||++|.
T Consensus 99 ~~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~v~~~-~~~~~a~~~~~--~~~e~Sa~~~~ 173 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARS-REVSLE-EGRHLAGTLSC--KHIETSAALHH 173 (195)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCTTT-CCSCHH-HHHHHHHHTTC--EEEEEBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeechhcccc-CCcCHH-HHHHHHHHhCC--EEEEEcCCCCC
Confidence 9999999999999999886 888777643 47999999999999765 444433 34556666653 89999999999
Q ss_pred cceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
|++++++.+.+.+..
T Consensus 174 ------------~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 174 ------------NTRELFEGAVRQIRL 188 (195)
T ss_dssp ------------SHHHHHHHHHHHHHT
T ss_pred ------------CHHHHHHHHHHHHHH
Confidence 999999998887654
No 44
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=3.5e-24 Score=193.56 Aligned_cols=165 Identities=24% Similarity=0.302 Sum_probs=129.1
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCE
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ 89 (514)
.....+||+|+|++|||||||+|+|++..+...+.++.+.+. ....+....+.+.||||||.+.+......+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 345679999999999999999999999887554444332222 223344557899999999999988888999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccc
Q 010254 90 VVLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQ 167 (514)
Q Consensus 90 ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~ 167 (514)
+|+|||++++.++..+.. |+..+.... .++|+++|+||+|+... .... +....+++.++. ++++|||+++.
T Consensus 91 ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~~~--~~~~-~~~~~~~~~~~~--~~~~~Sa~~~~- 163 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKENR--EVDR-NEGLKFARKHSM--LFIEASAKTCD- 163 (195)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHTTCCSCSCCEEEEEEECTTSSSC--CSCH-HHHHHHHHHTTC--EEEECCTTTCT-
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCcEEEEEECCcCccc--ccCH-HHHHHHHHHcCC--EEEEecCCCCC-
Confidence 999999999999988875 888887753 47899999999999543 2222 233455656543 79999999999
Q ss_pred ceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 168 VKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 168 ~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
|++++++.|.+.+...
T Consensus 164 -----------gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 164 -----------GVQCAFEELVEKIIQT 179 (195)
T ss_dssp -----------THHHHHHHHHHHHHTS
T ss_pred -----------CHHHHHHHHHHHHHhh
Confidence 9999999998877543
No 45
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.92 E-value=2.8e-24 Score=193.85 Aligned_cols=165 Identities=19% Similarity=0.320 Sum_probs=122.2
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCE
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ 89 (514)
.....+||+|+|++|||||||+|+|++..+.....+..+... ....+....+.+.+|||||.+.+......+++.+|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 345679999999999999999999999886544433322211 222333446789999999999998888999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccc
Q 010254 90 VVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (514)
Q Consensus 90 ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~ 168 (514)
+|+|||++++.+++.+.. |+..+.... .+.|+++|+||+|+... +....+ ....+++.+... ++++|||++|.
T Consensus 102 iilV~D~~~~~s~~~~~~-~~~~i~~~~~~~~piilV~NK~Dl~~~-~~v~~~-~~~~~~~~~~~~-~~~~~SA~~g~-- 175 (192)
T 2il1_A 102 IILVYDITKKETFDDLPK-WMKMIDKYASEDAELLLVGNKLDCETD-REITRQ-QGEKFAQQITGM-RFCEASAKDNF-- 175 (192)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGG-CCSCHH-HHHHHHHTSTTC-EEEECBTTTTB--
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECcccccc-cccCHH-HHHHHHHhcCCC-eEEEEeCCCCC--
Confidence 999999999999988875 888887754 47999999999999765 333332 334555554332 89999999999
Q ss_pred eecCCCCChhhHHHHHHHHHHHhc
Q 010254 169 KCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 169 ~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.+.
T Consensus 176 ----------gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 176 ----------NVDEIFLKLVDDIL 189 (192)
T ss_dssp ----------SHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHH
Confidence 99999998877653
No 46
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.91 E-value=5.7e-24 Score=191.67 Aligned_cols=166 Identities=20% Similarity=0.274 Sum_probs=126.7
Q ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhcc
Q 010254 10 GPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRA 87 (514)
Q Consensus 10 ~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a 87 (514)
.......+||+|+|++|||||||+|+|++..+.....+..+... ....+....+.+.||||||.+.+......+++.+
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 94 (191)
T 2a5j_A 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA 94 (191)
T ss_dssp CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence 33446689999999999999999999999887554333222221 2223344467999999999998888888999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccc
Q 010254 88 DAVVLTYACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (514)
Q Consensus 88 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~ 166 (514)
|++++|||++++.+++.+.. |+..+... ..+.|+++|+||+|+.+. +....+ ....+++.++. ++++|||+++.
T Consensus 95 d~ii~v~d~~~~~s~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~~~Sa~~~~ 169 (191)
T 2a5j_A 95 AGALLVYDITRRETFNHLTS-WLEDARQHSSSNMVIMLIGNKSDLESR-RDVKRE-EGEAFAREHGL--IFMETSAKTAC 169 (191)
T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG-CCSCHH-HHHHHHHHHTC--EEEEECTTTCT
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccCCc-cccCHH-HHHHHHHHcCC--EEEEEeCCCCC
Confidence 99999999999999988876 88877765 357999999999999764 333332 34556666654 89999999999
Q ss_pred cceecCCCCChhhHHHHHHHHHHHhc
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.+.
T Consensus 170 ------------gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 170 ------------NVEEAFINTAKEIY 183 (191)
T ss_dssp ------------THHHHHHHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHH
Confidence 99999988877654
No 47
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.91 E-value=3.9e-24 Score=190.85 Aligned_cols=163 Identities=20% Similarity=0.241 Sum_probs=127.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
...+||+|+|++|||||||+|+|+++.+...+.++...+. ....+....+.+.+|||||++.+......+++.+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 4679999999999999999999998887555544333222 222333445788999999999988888889999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 93 TYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
|||++++.+++.+.. |...+.... .++|+++|+||+|+... +.+..+ ....+++.++. ++++|||++|.
T Consensus 84 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~---- 154 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHME-RVISYE-EGKALAESWNA--AFLESSAKENQ---- 154 (181)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHC----CCEEEEEECTTCTTT-CCSCHH-HHHHHHHHTTC--EEEECCTTSHH----
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhc-ceecHH-HHHHHHHHhCC--cEEEEecCCCC----
Confidence 999999999998876 777765542 47999999999999765 334333 34567777664 89999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhcC
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
|++++++.+.+.+..
T Consensus 155 --------~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 155 --------TAVDVFRRIILEAEK 169 (181)
T ss_dssp --------HHHHHHHHHHHHHHT
T ss_pred --------CHHHHHHHHHHHHHH
Confidence 999999999887654
No 48
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.91 E-value=7.3e-24 Score=190.36 Aligned_cols=161 Identities=19% Similarity=0.331 Sum_probs=123.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
...+||+|+|++|||||||+|+|+++.+...+.++..... ....+....+.+.+|||||.+.+......+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 3579999999999999999999999886555443332111 222344556778999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 93 TYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
|||++++.+++.+.. |...+.... .+.|+++|+||+|+... .. ..+....+++.++. ++++|||++|.
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~~--~~-~~~~~~~~~~~~~~--~~~~~Sa~~g~---- 151 (189)
T 4dsu_A 82 VFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLPSR--TV-DTKQAQDLARSYGI--PFIETSAKTRQ---- 151 (189)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTSSSC--SS-CHHHHHHHHHHHTC--CEEECCTTTCT----
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccCccc--cc-CHHHHHHHHHHcCC--eEEEEeCCCCC----
Confidence 999999999988876 777776642 47999999999999753 12 22345667777664 89999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhc
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.+.
T Consensus 152 --------gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 152 --------GVDDAFYTLVREIR 165 (189)
T ss_dssp --------THHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHH
Confidence 99999998887664
No 49
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=5.1e-24 Score=193.38 Aligned_cols=163 Identities=23% Similarity=0.288 Sum_probs=125.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
....+||+|+|++|||||||+|+|++..+.....++.+... ....+....+.+.+|||||.+.+......+++.+|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 34579999999999999999999999886544333222111 1223334467899999999999888888899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccce
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVK 169 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~ 169 (514)
++|||++++.+++.+.. |+..+.... .+.|+++|+||+|+.+. +.+..+ ....++...+. ++++|||++|.
T Consensus 103 i~v~D~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~NK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~~~Sa~~g~--- 174 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPE-WLREIEQYASNKVITVLVGNKIDLAER-REVSQQ-RAEEFSEAQDM--YYLETSAKESD--- 174 (201)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGG-CSSCHH-HHHHHHHHHTC--CEEECCTTTCT---
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCccc-cccCHH-HHHHHHHHcCC--EEEEEeCCCCC---
Confidence 99999999999988875 888887654 47899999999999754 333333 33455555553 89999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHHhc
Q 010254 170 CFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 170 ~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.+.
T Consensus 175 ---------gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 175 ---------NVEKLFLDLACRLI 188 (201)
T ss_dssp ---------THHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHH
Confidence 99999988887664
No 50
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.91 E-value=6.4e-24 Score=193.26 Aligned_cols=161 Identities=20% Similarity=0.264 Sum_probs=126.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
...+||+|+|++|||||||+|+|++..+...+.++.+.+. ....+....+.+.+|||||++.+......+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 4579999999999999999999999987655544433222 22233455789999999999998888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
+|||++++.+++.+.. |+..+.... .+.|+++|+||+|+... +.... +....+++.++. ++++|||++|.
T Consensus 86 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~--~~~~~Sa~~~~---- 156 (203)
T 1zbd_A 86 LMYDITNEESFNAVQD-WSTQIKTYSWDNAQVLLVGNKCDMEDE-RVVSS-ERGRQLADHLGF--EFFEASAKDNI---- 156 (203)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHSCSSCEEEEEEECTTCTTS-CCSCH-HHHHHHHHHHTC--EEEECBTTTTB----
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccCcc-cccCH-HHHHHHHHHCCC--eEEEEECCCCC----
Confidence 9999999999988875 888887654 57999999999999765 33332 334566666654 89999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHh
Q 010254 171 FNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++++.|.+.+
T Consensus 157 --------gi~~l~~~l~~~i 169 (203)
T 1zbd_A 157 --------NVKQTFERLVDVI 169 (203)
T ss_dssp --------SSHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHH
Confidence 7777777766544
No 51
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.91 E-value=6.5e-24 Score=191.96 Aligned_cols=163 Identities=19% Similarity=0.294 Sum_probs=127.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
....+||+|+|++|||||||+|+|++..+.....+..+... ....+....+.+.+|||||.+.+......+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 35679999999999999999999999886554433322222 2223334457899999999999988899999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccce
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVK 169 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~ 169 (514)
++|||++++.+++.+.. |+..+.... .+.|+++|+||+|+.+. +....+ ....++..++. ++++|||++|.
T Consensus 93 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~g~--- 164 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTK-KVVDYT-TAKEFADSLGI--PFLETSAKNAT--- 164 (196)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCTTT-CCSCHH-HHHHHHHHTTC--CEEEECTTTCT---
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccccc-cccCHH-HHHHHHHHcCC--cEEEEeCCCCC---
Confidence 99999999999988876 888877654 47899999999999765 333322 34556666654 89999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHHhc
Q 010254 170 CFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 170 ~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.+.
T Consensus 165 ---------gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 165 ---------NVEQSFMTMAAEIK 178 (196)
T ss_dssp ---------THHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHH
Confidence 88988888877664
No 52
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.91 E-value=2.1e-24 Score=192.05 Aligned_cols=164 Identities=20% Similarity=0.225 Sum_probs=125.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeC-CeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYP-DRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
+..+||+|+|++|||||||+|+|++..+...+.++.+... ....+.. ..+.+.+|||||.+.+......+++.+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4579999999999999999999999886433322222111 1122222 258999999999999888889999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC---CCCc-EEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccc
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRLE---VKVP-VIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~p-vilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~ 166 (514)
++|||++++.+++.+.. |+..+.... .+.| +++|+||+|+.+. +....+ ....+++.++. ++++|||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~ 158 (178)
T 2hxs_A 84 LLVYDITNYQSFENLED-WYTVVKKVSEESETQPLVALVGNKIDLEHM-RTIKPE-KHLRFCQENGF--SSHFVSAKTGD 158 (178)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHHHHTCCCEEEEEEECGGGGGG-CSSCHH-HHHHHHHHHTC--EEEEECTTTCT
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHHhcccCCCCeEEEEEEccccccc-cccCHH-HHHHHHHHcCC--cEEEEeCCCCC
Confidence 99999999999988875 888777642 2455 8999999999764 333332 34556666654 89999999999
Q ss_pred cceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
|++++++.|.+.+...
T Consensus 159 ------------gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 159 ------------SVFLCFQKVAAEILGI 174 (178)
T ss_dssp ------------THHHHHHHHHHHHTTC
T ss_pred ------------CHHHHHHHHHHHHHhh
Confidence 9999999998877643
No 53
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.91 E-value=4e-24 Score=188.13 Aligned_cols=161 Identities=20% Similarity=0.278 Sum_probs=125.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
...+||+|+|++|||||||+|+|++..+.....++.+... ....+....+.+.+|||||.+.+......+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 3579999999999999999999999886554443332222 22233344678999999999988888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceec
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCF 171 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f 171 (514)
+|+|++++.+++.+.. |+..+....++.|+++|+||+|+.+. +....+ ....+++.++. +++++||+++.
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~piilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~----- 152 (168)
T 1z2a_A 83 LVFSTTDRESFEAISS-WREKVVAEVGDIPTALVQNKIDLLDD-SCIKNE-EAEGLAKRLKL--RFYRTSVKEDL----- 152 (168)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHHCSCCEEEEEECGGGGGG-CSSCHH-HHHHHHHHHTC--EEEECBTTTTB-----
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECcccCcc-cccCHH-HHHHHHHHcCC--eEEEEecCCCC-----
Confidence 9999999998888876 88877665568999999999999764 333322 34556666654 89999999999
Q ss_pred CCCCChhhHHHHHHHHHHHh
Q 010254 172 NSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 172 ~~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++++.|.+.+
T Consensus 153 -------~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 153 -------NVSEVFKYLAEKH 165 (168)
T ss_dssp -------SSHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHH
Confidence 8999998887755
No 54
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.91 E-value=1.9e-24 Score=196.90 Aligned_cols=164 Identities=21% Similarity=0.368 Sum_probs=124.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t-t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
.++.+||+|+|++|||||||+++|++..+.....++.... .....+....+.+.+|||||++.+......+++.+|+++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 3567999999999999999999999887654443322111 122234455677889999999999888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccc-----------hhHhhhhHHHHHHHhccCcEEEc
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQ-----------VSLEQVMMPIMQQFREIETCIEC 160 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~-----------~~~~~~~~~~~~~~~~~~~~i~~ 160 (514)
+|||++++.+++.+...|+..+....+++|+++|+||+|+...... .. .+....+++.++. .++++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~-~~~~~~ 184 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPIT-YPQGLAMAKEIGA-VKYLEC 184 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCC-HHHHHHHHHHTTC-SEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhcccccccc-HHHHHHHHHhcCC-cEEEEe
Confidence 9999999999999876699999887778999999999999765210 11 1233445555553 269999
Q ss_pred CccccccceecCCCCChhhHHHHHHHHHHH
Q 010254 161 SALKQIQVKCFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 161 Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~ 190 (514)
||++|. |++++++.|.+.
T Consensus 185 SA~~g~------------gi~~l~~~l~~~ 202 (204)
T 4gzl_A 185 SALTQR------------GLKTVFDEAIRA 202 (204)
T ss_dssp CTTTCT------------THHHHHHHHHHT
T ss_pred eCCCCC------------CHHHHHHHHHHH
Confidence 999999 999999988764
No 55
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.91 E-value=3.3e-24 Score=189.10 Aligned_cols=162 Identities=20% Similarity=0.278 Sum_probs=120.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
...+||+|+|++|||||||+|+|++..+.....++.+... ....+....+.+.+|||||.+.+......+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 4579999999999999999999999886544433333222 22333455678999999999888877788899999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
+|+|++++.+++.+.. |+..+.... .+.|+++|+||+|+.+. +....+ ....+++.++. +++++||++|.
T Consensus 84 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~---- 154 (170)
T 1z08_A 84 LVYDITDEDSFQKVKN-WVKELRKMLGNEICLCIVGNKIDLEKE-RHVSIQ-EAESYAESVGA--KHYHTSAKQNK---- 154 (170)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHHGGGSEEEEEEECGGGGGG-CCSCHH-HHHHHHHHTTC--EEEEEBTTTTB----
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEECcccccc-cccCHH-HHHHHHHHcCC--eEEEecCCCCC----
Confidence 9999999999988875 887776643 47999999999999765 333333 34556666653 89999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhc
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.+.
T Consensus 155 --------gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 155 --------GIEELFLDLCKRMI 168 (170)
T ss_dssp --------SHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHh
Confidence 99999999887664
No 56
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.91 E-value=3.6e-24 Score=194.28 Aligned_cols=165 Identities=21% Similarity=0.313 Sum_probs=121.3
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCE
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ 89 (514)
..+..+||+|+|++|||||||+|+|++..+...+.+..+.+. ....+....+.+.||||||.+.+......+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 345679999999999999999999999887544433332221 233444556889999999999998888999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCccc-----ccchhHhhhhHHHHHHHhccCcEEEcCcc
Q 010254 90 VVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDE-----NQQVSLEQVMMPIMQQFREIETCIECSAL 163 (514)
Q Consensus 90 ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~ 163 (514)
+|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+.+. .+.+.. +....++..++. ++++|||+
T Consensus 104 iilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~-~~~~~~~~~~~~--~~~~~SA~ 179 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIRE-WVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPG-HFGEKLAMTYGA--LFCETSAK 179 (199)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCH-HHHHHHHHHHTC--EEEECCTT
T ss_pred EEEEEECCChHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccccccccccccccCH-HHHHHHHHHcCC--eEEEeeCC
Confidence 999999999999988875 888887653 47999999999999742 122222 233456666654 89999999
Q ss_pred ccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 164 KQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 164 ~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
+|. |++++++.|.+.+.
T Consensus 180 ~g~------------gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 180 DGS------------NIVEAVLHLAREVK 196 (199)
T ss_dssp TCT------------THHHHHHHHHHHHT
T ss_pred CCC------------CHHHHHHHHHHHHH
Confidence 999 99999999887664
No 57
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.91 E-value=3.4e-24 Score=188.96 Aligned_cols=161 Identities=20% Similarity=0.285 Sum_probs=122.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
..+||+|+|++|||||||+|+|++.++.....+..+... ....+....+.+.+|||||.+.+......+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999886544333222211 222333446789999999999888888899999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceec
Q 010254 93 TYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCF 171 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f 171 (514)
|+|++++.+++.+.. |+..+.... ++.|+++|+||+|+... .... +....+++.++. ++++|||++|.
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~--~~~~-~~~~~~~~~~~~--~~~~~Sa~~~~----- 150 (170)
T 1g16_A 82 VYDITDERTFTNIKQ-WFKTVNEHANDEAQLLLVGNKSDMETR--VVTA-DQGEALAKELGI--PFIESSAKNDD----- 150 (170)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCTTC--CSCH-HHHHHHHHHHTC--CEEECBTTTTB-----
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCCcC--ccCH-HHHHHHHHHcCC--eEEEEECCCCC-----
Confidence 999999999888875 888777654 57999999999999432 2222 344566666654 89999999999
Q ss_pred CCCCChhhHHHHHHHHHHHhcC
Q 010254 172 NSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 172 ~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
|++++++.|.+.+.+
T Consensus 151 -------gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 151 -------NVNEIFFTLAKLIQE 165 (170)
T ss_dssp -------SHHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHH
Confidence 999999998877653
No 58
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.91 E-value=9.1e-24 Score=185.20 Aligned_cols=161 Identities=20% Similarity=0.349 Sum_probs=125.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT-RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t-t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
|+.+||+++|++|||||||+|+|++..+.....+..... .....+....+.+.+|||||.+++......+++.+|++++
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 356899999999999999999999988654443322211 1222334456789999999999888888889999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 93 TYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
|||++++.+++.+.. |...+.... .+.|+++|+||+|+.+. ... .+....+++.++. +++++||++|.
T Consensus 81 v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~nK~Dl~~~--~~~-~~~~~~~~~~~~~--~~~~~Sa~~~~---- 150 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDLAAR--TVE-SRQAQDLARSYGI--PYIETSAKTRQ---- 150 (166)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSCC--CSC-HHHHHHHHHHHTC--CEEEECTTTCT----
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEchhhhhc--ccC-HHHHHHHHHHcCC--eEEEecCCCCC----
Confidence 999999999888865 888777653 37999999999999763 122 2344566666654 89999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhc
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++.+.|.+.+.
T Consensus 151 --------gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 151 --------GVEDAFYTLVREIR 164 (166)
T ss_dssp --------THHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHH
Confidence 99999999887653
No 59
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.91 E-value=1.2e-23 Score=189.85 Aligned_cols=163 Identities=15% Similarity=0.211 Sum_probs=126.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccc---ccceeCC---------eeEEEEEeCCCCccchhhH
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRL---PEDFYPD---------RVPITIIDTPSSVEDRGKL 80 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~---~~~~~~~---------~~~~~l~Dt~G~~~~~~~~ 80 (514)
....+||+|+|++|||||||+|+|++..+.....++.+.... ...+... .+.+.+|||||++.+....
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 456799999999999999999999998865444333322111 1112222 5799999999999998888
Q ss_pred HHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEE
Q 010254 81 GEELRRADAVVLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCI 158 (514)
Q Consensus 81 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (514)
..+++.+|++|+|||++++.++..+.. |+..+.... .++|+++|+||+|+... +.... +....++..++. +++
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~--~~~ 162 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQMHAYSENPDIVLCGNKSDLEDQ-RAVKE-EEARELAEKYGI--PYF 162 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHSSSSSCCEEEEEECTTCGGG-CCSCH-HHHHHHHHHHTC--CEE
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc-cccCH-HHHHHHHHHcCC--CEE
Confidence 999999999999999999999988875 888777654 48999999999999764 33332 234556666654 899
Q ss_pred EcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 159 ECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 159 ~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
+|||+++. |++++++.|.+.+.
T Consensus 163 ~~Sa~~~~------------~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 163 ETSAANGT------------NISHAIEMLLDLIM 184 (195)
T ss_dssp ECCTTTCT------------THHHHHHHHHHHHH
T ss_pred EEECCCCC------------CHHHHHHHHHHHHH
Confidence 99999999 99999988887654
No 60
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=4.1e-24 Score=195.23 Aligned_cols=167 Identities=20% Similarity=0.356 Sum_probs=125.8
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
+.+..+||+|+|++|||||||+|+|++..+...+.++..... ....+....+.+.||||||++++......+++.+|++
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (207)
T 2fv8_A 21 QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (207)
T ss_dssp GGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred ccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence 346679999999999999999999999887544433222211 2223334467899999999998888888899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccccc-----------chhHhhhhHHHHHHHhccCcEEE
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ-----------QVSLEQVMMPIMQQFREIETCIE 159 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~~~~~~i~ 159 (514)
++|||++++.+++.+...|+..+....+++|+++|+||+|+..... .+.. +....++..++. .++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~-~~~~~ 178 (207)
T 2fv8_A 101 LMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRT-DDGRAMAVRIQA-YDYLE 178 (207)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCH-HHHHHHHHHTTC-SEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCH-HHHHHHHHhcCC-CEEEE
Confidence 9999999999999986669999988777899999999999976411 1111 123344555442 27899
Q ss_pred cCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 160 CSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 160 ~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|||++|. |+++|++.|.+.+.
T Consensus 179 ~SA~~g~------------gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 179 CSAKTKE------------GVREVFETATRAAL 199 (207)
T ss_dssp CCTTTCT------------THHHHHHHHHHHHH
T ss_pred eeCCCCC------------CHHHHHHHHHHHHH
Confidence 9999999 99999999988764
No 61
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.91 E-value=6.7e-24 Score=188.79 Aligned_cols=164 Identities=23% Similarity=0.285 Sum_probs=125.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
++..+||+|+|++|||||||+|+|++..+.....+..+... ....+....+.+.+|||||.+.+......+++.+|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 46779999999999999999999998886544333222111 2223334457899999999999888889999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccce
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVK 169 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~ 169 (514)
++|+|++++.+++.+.. |+..+... ..+.|+++|+||+|+.+. +....+ ....++..++. ++++|||++|.
T Consensus 91 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~--- 162 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSK-WIDDVRTERGSDVIIMLVGNKTDLSDK-RQVSTE-EGERKAKELNV--MFIETSAKAGY--- 162 (179)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHTTSSEEEEEEECGGGGGG-CCSCHH-HHHHHHHHHTC--EEEEEBTTTTB---
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCccccc-CcCCHH-HHHHHHHHcCC--eEEEEeCCCCC---
Confidence 99999999988888875 77776654 347999999999999765 333333 23445555543 89999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHHhcC
Q 010254 170 CFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 170 ~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
|++++++.|.+.++.
T Consensus 163 ---------~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 163 ---------NVKQLFRRVAAALPG 177 (179)
T ss_dssp ---------SHHHHHHHHHHTCC-
T ss_pred ---------CHHHHHHHHHHHHhh
Confidence 999999999887653
No 62
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.91 E-value=7.3e-24 Score=188.29 Aligned_cols=163 Identities=20% Similarity=0.285 Sum_probs=123.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
....++|+|+|++|||||||+|+|++..+.....+..+... ....+....+.+.+|||||.+.+......+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 45679999999999999999999999886544433332222 2223334457999999999999888888899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccc
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRLE-----VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~ 165 (514)
++|||++++.+++.+.. |+..+.... .+.|+++|+||+|+... ....+ ....+++..... ++++|||++|
T Consensus 84 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~--~~~~~-~~~~~~~~~~~~-~~~~~Sa~~~ 158 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDISER--QVSTE-EAQAWCRDNGDY-PYFETSAKDA 158 (177)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCSSC--SSCHH-HHHHHHHHTTCC-CEEECCTTTC
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHHccccccCCCcEEEEEECCccccc--ccCHH-HHHHHHHhcCCc-eEEEEeCCCC
Confidence 99999999999988865 887776542 47899999999999732 23333 334455533333 8999999999
Q ss_pred ccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 166 IQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 166 ~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
. |++++++.+.+.+.
T Consensus 159 ~------------gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 159 T------------NVAAAFEEAVRRVL 173 (177)
T ss_dssp T------------THHHHHHHHHHHHH
T ss_pred C------------CHHHHHHHHHHHHH
Confidence 9 99999999887664
No 63
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.91 E-value=9.5e-24 Score=190.48 Aligned_cols=163 Identities=21% Similarity=0.235 Sum_probs=126.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--ccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT--RLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t--t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
....+||+|+|++|||||||+|+|++..+.....+..+.. +....+....+.+.+|||||++.+......+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 4567999999999999999999999988755443332221 12334445678999999999999888889999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccce
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVK 169 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~ 169 (514)
|+|||++++.++..+.. |+..+.... .+.|+++|+||+|+... +....+ ....++...+. ++++|||++|.
T Consensus 102 i~v~D~~~~~s~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~--- 173 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVER-WLKELYDHAEATIVVMLVGNKSDLSQA-REVPTE-EARMFAENNGL--LFLETSALDST--- 173 (193)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHTTSCTTCEEEEEEECGGGGGG-CCSCHH-HHHHHHHHTTC--EEEEECTTTCT---
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEECCCcccc-cccCHH-HHHHHHHHcCC--EEEEEeCCCCC---
Confidence 99999999999888775 888877653 57899999999999765 333322 33455555543 89999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHHhc
Q 010254 170 CFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 170 ~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.+.
T Consensus 174 ---------gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 174 ---------NVELAFETVLKEIF 187 (193)
T ss_dssp ---------THHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHH
Confidence 99999988877653
No 64
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.3e-23 Score=187.16 Aligned_cols=165 Identities=20% Similarity=0.288 Sum_probs=120.2
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCcccc--cceeCCeeEEEEEeCCCCccchhhHHHhhhccC
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTRLP--EDFYPDRVPITIIDTPSSVEDRGKLGEELRRAD 88 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~-~~~~~~~tt~~--~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad 88 (514)
.....+||+|+|++|||||||+|+|++..+... +.++.+..... ..+....+.+.+|||||.+.+...+..+++.+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 346789999999999999999999999886432 22222211111 133344678999999999988888888999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccc
Q 010254 89 AVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQ 167 (514)
Q Consensus 89 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~ 167 (514)
++++|+|++++.+++.+.. |+..+.... .+.|+++|+||+|+... +....+ ....+++.++. ++++|||+++.
T Consensus 86 ~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~- 159 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQA-WLTEIHEYAQHDVALMLLGNKVDSAHE-RVVKRE-DGEKLAKEYGL--PFMETSAKTGL- 159 (180)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECCSTTSC-CCSCHH-HHHHHHHHHTC--CEEECCTTTCT-
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECcccCcc-cccCHH-HHHHHHHHcCC--eEEEEeCCCCC-
Confidence 9999999999999888875 888877654 57999999999999865 333332 34556666654 89999999999
Q ss_pred ceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 168 VKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 168 ~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
|++++++.+.+.+..
T Consensus 160 -----------gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 160 -----------NVDLAFTAIAKELKR 174 (180)
T ss_dssp -----------THHHHHHHHHHHHHC
T ss_pred -----------CHHHHHHHHHHHHHH
Confidence 999999998887653
No 65
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.91 E-value=7.3e-24 Score=189.93 Aligned_cols=163 Identities=23% Similarity=0.249 Sum_probs=125.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
....+||+|+|++|||||||+|+|++..+.....+..+... ....+....+.+.+|||||.+.+......+++.+|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 35679999999999999999999999886544333222111 1222334457899999999999888888899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccce
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVK 169 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~ 169 (514)
++|||++++.+++.+.. |+..+.... .+.|+++|+||+|+... +....+ ....++..++. ++++|||++|.
T Consensus 87 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~--- 158 (186)
T 2bme_A 87 LLVYDITSRETYNALTN-WLTDARMLASQNIVIILCGNKKDLDAD-REVTFL-EASRFAQENEL--MFLETSALTGE--- 158 (186)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGG-CCSCHH-HHHHHHHHTTC--EEEECCTTTCT---
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECcccccc-cccCHH-HHHHHHHHcCC--EEEEecCCCCC---
Confidence 99999999999988875 887776643 57999999999999754 333333 33455555543 89999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHHhc
Q 010254 170 CFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 170 ~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.+.+.+.
T Consensus 159 ---------gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 159 ---------NVEEAFVQCARKIL 172 (186)
T ss_dssp ---------THHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHH
Confidence 89998888877654
No 66
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=6.6e-25 Score=197.81 Aligned_cols=162 Identities=21% Similarity=0.270 Sum_probs=128.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
...+||+|+|++|||||||+|+|++..+.....+..+.+. ....+....+.+.||||||.+.+......+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 4569999999999999999999999887555433332222 22334456789999999999988888899999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
+|||++++.+++.+.. |+..+.... .+.|+++|+||+|+... +....+ ....+++.++. ++++|||++|.
T Consensus 101 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~---- 171 (191)
T 3dz8_A 101 LMYDITNEESFNAVQD-WATQIKTYSWDNAQVILVGNKCDMEEE-RVVPTE-KGQLLAEQLGF--DFFEASAKENI---- 171 (191)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG-CCSCHH-HHHHHHHHHTC--EEEECBTTTTB----
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCccc-cccCHH-HHHHHHHHcCC--eEEEEECCCCC----
Confidence 9999999999988886 888888754 57999999999999765 333333 34556666654 89999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhc
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.+.
T Consensus 172 --------gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 172 --------SVRQAFERLVDAIC 185 (191)
T ss_dssp --------SHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHH
Confidence 99999988887654
No 67
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.91 E-value=6.2e-24 Score=187.24 Aligned_cols=159 Identities=21% Similarity=0.191 Sum_probs=113.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--cccccceeCCeeEEEEEeCCCCccchh-hHHHhhhccCEEEE
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP--TRLPEDFYPDRVPITIIDTPSSVEDRG-KLGEELRRADAVVL 92 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~--tt~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~ad~ii~ 92 (514)
-+||+|+|++|||||||+|+|++..+.......... ......+....+.+.+|||||.+.+.. ....+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 489999999999999999999987653332211111 113334455578899999999988765 55667899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 93 TYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
|||++++.+++.+.. |+..+.... .++|+++|+||+|+.+. +....+ ....+++.++. ++++|||++|.
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~---- 152 (169)
T 3q85_A 82 VFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARS-REVSLE-EGRHLAGTLSC--KHIETSAALHH---- 152 (169)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCGGG-CCSCHH-HHHHHHHHTTC--EEEECBTTTTB----
T ss_pred EEECCChHHHHHHHH-HHHHHHhcccCCCCCEEEEeeCcchhhc-ccCCHH-HHHHHHHHcCC--cEEEecCccCC----
Confidence 999999999999886 777766654 37999999999999765 333333 34556666654 89999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHh
Q 010254 171 FNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++++.+.+.+
T Consensus 153 --------~v~~l~~~l~~~i 165 (169)
T 3q85_A 153 --------NTRELFEGAVRQI 165 (169)
T ss_dssp --------SHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHH
Confidence 9999998887755
No 68
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=6.3e-24 Score=194.79 Aligned_cols=167 Identities=19% Similarity=0.276 Sum_probs=122.6
Q ss_pred CCCCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccc--ccceeCCeeEEEEEeCCCCccchhhHHHhhh
Q 010254 8 NSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRL--PEDFYPDRVPITIIDTPSSVEDRGKLGEELR 85 (514)
Q Consensus 8 ~~~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~--~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 85 (514)
.++......++|+|+|++|||||||+|+|++..+.....+..+.... ...+....+.+.||||||.+.+...+..+++
T Consensus 12 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 91 (213)
T 3cph_A 12 GNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYR 91 (213)
T ss_dssp --------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHT
T ss_pred CCCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhc
Confidence 34445567899999999999999999999998865444333222221 2223333578999999999988888889999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccc
Q 010254 86 RADAVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALK 164 (514)
Q Consensus 86 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 164 (514)
.+|++++|||++++.+++.+.. |+..+.... .+.|+++|+||+|+... .... +....++..++. ++++|||++
T Consensus 92 ~~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~--~~~~-~~~~~~~~~~~~--~~~~~Sa~~ 165 (213)
T 3cph_A 92 GAMGIILVYDVTDERTFTNIKQ-WFKTVNEHANDEAQLLLVGNKSDMETR--VVTA-DQGEALAKELGI--PFIESSAKN 165 (213)
T ss_dssp TCSEEEEEEETTCHHHHHTHHH-HHHHHHHHTTTCSEEEEEEECTTCSSC--CSCH-HHHHHHHHHHTC--CEEECBTTT
T ss_pred cCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCccc--ccCH-HHHHHHHHHcCC--EEEEEeCCC
Confidence 9999999999999988888875 888777654 36899999999999432 2222 234556666654 899999999
Q ss_pred cccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 165 QIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 165 ~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
+. |++++++.|.+.+.
T Consensus 166 ~~------------gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 166 DD------------NVNEIFFTLAKLIQ 181 (213)
T ss_dssp TB------------SSHHHHHHHHHHHH
T ss_pred CC------------CHHHHHHHHHHHHH
Confidence 99 88888888776654
No 69
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.91 E-value=7.6e-24 Score=188.96 Aligned_cols=165 Identities=17% Similarity=0.258 Sum_probs=114.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--ccccee-CCeeEEEEEeCCCCccchhhHHHhhhccCE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFY-PDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ 89 (514)
....++|+|+|++|||||||+|+|++..+...+.+..+... ....+. .....+.+|||||.+.+......+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 34579999999999999999999999887555443332222 222233 335789999999998888888888999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccc
Q 010254 90 VVLTYACDRPETLDELSTFWLPELRRLE-----VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALK 164 (514)
Q Consensus 90 ii~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 164 (514)
+++|||++++.+++.+.. |+..+.... .+.|+++|+||+|+....+....+ ....+++..... ++++|||++
T Consensus 85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~-~~~~~~~~~~~~-~~~~~Sa~~ 161 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEK-SAQELAKSLGDI-PLFLTSAKN 161 (182)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHH-HHHHHHHHTTSC-CEEEEBTTT
T ss_pred EEEEEECCChHHHHHHHH-HHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHH-HHHHHHHhcCCC-eEEEEecCC
Confidence 999999999999988875 777766532 478999999999996542333332 334555543333 899999999
Q ss_pred cccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 165 QIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 165 ~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|. |++++++.|.+.+.
T Consensus 162 ~~------------gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 162 AI------------NVDTAFEEIARSAL 177 (182)
T ss_dssp TB------------SHHHHHHHHHHHHH
T ss_pred CC------------CHHHHHHHHHHHHH
Confidence 99 99999998887553
No 70
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.2e-23 Score=191.79 Aligned_cols=161 Identities=23% Similarity=0.246 Sum_probs=117.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCcc-chhhHHHhhhcc
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTF--PANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVE-DRGKLGEELRRA 87 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~--~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~a 87 (514)
....+||+|+|++|||||||+|+|++... ...+++ .+..+ ....+....+.+.+|||+|.+. .......+++.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~-~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV-LGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCc-cceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 34569999999999999999999997552 222222 11111 2223444567789999999876 333445567889
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccc
Q 010254 88 DAVVLTYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (514)
Q Consensus 88 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~ 165 (514)
|++++|||++++.+|+.+.. |...+.+. ..++|++||+||+|+... +.+..++ ...++..++. ++++|||++|
T Consensus 113 ~~~ilVydvt~~~sf~~~~~-~~~~l~~~~~~~~~piilVgNK~DL~~~-r~v~~~e-~~~~a~~~~~--~~~e~SAk~g 187 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRC-REVSVSE-GRACAVVFDC--KFIETSAAVQ 187 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGG-CCSCHHH-HHHHHHHHTC--EEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEChHHhcC-ceEeHHH-HHHHHHHcCC--EEEEEeCCCC
Confidence 99999999999999999886 87777653 247999999999999764 4444332 3445556554 7999999999
Q ss_pred ccceecCCCCChhhHHHHHHHHHHHh
Q 010254 166 IQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 166 ~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
. |++++++.|.+.+
T Consensus 188 ~------------~v~elf~~l~~~i 201 (211)
T 2g3y_A 188 H------------NVKELFEGIVRQV 201 (211)
T ss_dssp B------------SHHHHHHHHHHHH
T ss_pred C------------CHHHHHHHHHHHH
Confidence 9 9999998887765
No 71
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.91 E-value=8.7e-24 Score=191.63 Aligned_cols=169 Identities=18% Similarity=0.261 Sum_probs=119.7
Q ss_pred CCCCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhc
Q 010254 8 NSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPA-NVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRR 86 (514)
Q Consensus 8 ~~~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~-~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 86 (514)
..........||+|+|++|||||||+|+|++..+.. .+.++.+ .+ ...+....+.+.+|||||++.+...+..+++.
T Consensus 9 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 86 (199)
T 4bas_A 9 HHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG-YN-VETFEKGRVAFTVFDMGGAKKFRGLWETYYDN 86 (199)
T ss_dssp -------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS-EE-EEEEEETTEEEEEEEECCSGGGGGGGGGGCTT
T ss_pred ccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc-ee-EEEEEeCCEEEEEEECCCCHhHHHHHHHHHhc
Confidence 344556778999999999999999999999998766 4444333 22 12344667899999999999999988999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHHhcC---------CCCcEEEEEecccCcccccchhHhhhh--HHHHHHHhccC
Q 010254 87 ADAVVLTYACDRPETLDELSTFWLPELRRLE---------VKVPVIVVGCKLDLRDENQQVSLEQVM--MPIMQQFREIE 155 (514)
Q Consensus 87 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~---------~~~pvilv~NK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~ 155 (514)
+|++|+|||++++.++..+.. |+..+.... .++|+++|+||+|+..........+.. ..+++..+ .
T Consensus 87 ~d~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~- 163 (199)
T 4bas_A 87 IDAVIFVVDSSDHLRLCVVKS-EIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHP-F- 163 (199)
T ss_dssp CSEEEEEEETTCGGGHHHHHH-HHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSC-E-
T ss_pred CCEEEEEEECCcHHHHHHHHH-HHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCe-e-
Confidence 999999999999999999876 555554321 278999999999998752111111111 01111111 2
Q ss_pred cEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 156 TCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 156 ~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
++++|||++|. |++++++.|.+.+..
T Consensus 164 ~~~~~Sa~~g~------------gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 164 VIFASNGLKGT------------GVHEGFSWLQETASR 189 (199)
T ss_dssp EEEECBTTTTB------------THHHHHHHHHHHHHH
T ss_pred EEEEeeCCCcc------------CHHHHHHHHHHHHHH
Confidence 78999999999 999999999887654
No 72
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.91 E-value=2.2e-23 Score=185.76 Aligned_cols=164 Identities=20% Similarity=0.261 Sum_probs=124.7
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
+.+..++|+|+|++|||||||+|+|++..+.....++..... ....+....+.+.+|||||.+++......+++.+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 456789999999999999999999999876554433222211 1122333457899999999998888888999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHH-Hhc-CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccc
Q 010254 91 VLTYACDRPETLDELSTFWLPEL-RRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l-~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~ 168 (514)
++|||++++.++..+.. |+..+ +.. ..++|+++|+||+|+... +....+ ....++...+. ++++|||++|.
T Consensus 85 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~~~Sa~~~~-- 157 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQ-RQVPRS-EASAFGASHHV--AYFEASAKLRL-- 157 (181)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGG-CCSCHH-HHHHHHHHTTC--EEEECBTTTTB--
T ss_pred EEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc-cccCHH-HHHHHHHHcCC--eEEEecCCCCC--
Confidence 99999999999988876 76666 332 247999999999999765 333322 33445555543 89999999999
Q ss_pred eecCCCCChhhHHHHHHHHHHHhc
Q 010254 169 KCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 169 ~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.+.
T Consensus 158 ----------gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 158 ----------NVDEAFEQLVRAVR 171 (181)
T ss_dssp ----------SHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHH
Confidence 99999998887664
No 73
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=9.5e-24 Score=191.38 Aligned_cols=162 Identities=21% Similarity=0.280 Sum_probs=126.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
...++|+|+|++|||||||+|+|++..+...+.++.+.++ ....+....+.+.+|||||.+.+......+++.+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 4579999999999999999999999887555544443332 222334456789999999999888888899999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhc---CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccce
Q 010254 93 TYACDRPETLDELSTFWLPELRRL---EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVK 169 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~ 169 (514)
|||++++.+++.+.. |...+... .++.|+++|+||+|+... .... +....++..++. ++++|||++|.
T Consensus 86 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~piilv~nK~Dl~~~--~~~~-~~~~~~~~~~~~--~~~~~Sa~~~~--- 156 (199)
T 2gf0_A 86 VFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGNKCDETQR--EVDT-REAQAVAQEWKC--AFMETSAKMNY--- 156 (199)
T ss_dssp EEETTCHHHHHTTHH-HHHHHHHHHSCGGGSCEEEEEECTTCSSC--SSCH-HHHHHHHHHHTC--EEEECBTTTTB---
T ss_pred EEECcCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCCcc--ccCH-HHHHHHHHHhCC--eEEEEecCCCC---
Confidence 999999999888876 66655543 247899999999999753 2222 233456666654 79999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHHhcC
Q 010254 170 CFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 170 ~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
|+++|++.|.+.+..
T Consensus 157 ---------gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 157 ---------NVKELFQELLTLETR 171 (199)
T ss_dssp ---------SHHHHHHHHHHHCSS
T ss_pred ---------CHHHHHHHHHHHHhh
Confidence 999999999987754
No 74
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.91 E-value=1.4e-23 Score=188.94 Aligned_cols=162 Identities=20% Similarity=0.339 Sum_probs=115.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
.+..++|+|+|++|||||||+|+|+++.+.....++..... ....+....+.+.+|||||.+.+......+++.+|+++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 36789999999999999999999999886544333221111 22233344678999999999988888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccce
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVK 169 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~ 169 (514)
+|||++++.+++.+.. |+..+.... .++|+++|+||+|+... ... .+....+++.++. ++++|||+++.
T Consensus 98 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~~~--~~~-~~~~~~~~~~~~~--~~~~~Sa~~~~--- 168 (190)
T 3con_A 98 CVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVGNKCDLPTR--TVD-TKQAHELAKSYGI--PFIETSAKTRQ--- 168 (190)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSCC--CSC-HHHHHHHHHHHTC--CEEECCTTTCT---
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECCcCCcc--cCC-HHHHHHHHHHcCC--eEEEEeCCCCC---
Confidence 9999999999888865 887776653 37999999999999763 222 2344566666654 89999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHHhc
Q 010254 170 CFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 170 ~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.+.
T Consensus 169 ---------gi~~l~~~l~~~~~ 182 (190)
T 3con_A 169 ---------GVEDAFYTLVREIR 182 (190)
T ss_dssp ---------THHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHH
Confidence 99999999887654
No 75
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.91 E-value=2.6e-23 Score=189.36 Aligned_cols=160 Identities=22% Similarity=0.291 Sum_probs=121.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCC--e-----------------------------
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPD--R----------------------------- 62 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~--~----------------------------- 62 (514)
...+||+|+|++|||||||+|+|++..+.....++.+.......+... .
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 457999999999999999999999998754444333221111111111 1
Q ss_pred --------eEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc
Q 010254 63 --------VPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 63 --------~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 134 (514)
..+.||||||++.+......+++.+|++++|+|++++.+++.+.. |+..+.... +.|+++|+||+| ...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~-~~~~i~~~~-~~piilv~NK~D-~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKT-WVNQLKISS-NYIIILVANKID-KNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHH-HHHHHHHHS-CCEEEEEEECTT-CC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHH-HHHHHHhhC-CCcEEEEEECCC-ccc
Confidence 889999999999988888999999999999999999999988775 888877654 499999999999 322
Q ss_pred ccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 135 NQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
+....+ ....+++.++. ++++|||++|. |++++++.|.+.+.
T Consensus 162 -~~~~~~-~~~~~~~~~~~--~~~~~Sa~~~~------------~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 162 -FQVDIL-EVQKYAQDNNL--LFIQTSAKTGT------------NIKNIFYMLAEEIY 203 (208)
T ss_dssp -CCSCHH-HHHHHHHHTTC--EEEEECTTTCT------------THHHHHHHHHHHHH
T ss_pred -ccCCHH-HHHHHHHHcCC--cEEEEecCCCC------------CHHHHHHHHHHHHH
Confidence 333333 34556666543 89999999999 99999988877553
No 76
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.91 E-value=2.4e-23 Score=183.72 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=118.9
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 11 ~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
+.++..++|+|+|++|||||||+|+|+++.+... .++.+ .+ ...+..++..+.+|||||++.+...+..+++.+|++
T Consensus 2 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~-~~-~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 78 (171)
T 1upt_A 2 SHMTREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG-FN-VETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAV 78 (171)
T ss_dssp -CCSSCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSS-EE-EEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred CCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCc-CCcCc-cc-eEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEE
Confidence 3456789999999999999999999999886432 22221 11 112334478999999999999888888899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc------cCcEEEcCc
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE------IETCIECSA 162 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~Sa 162 (514)
++|+|++++.++..... |+..+... ..+.|+++|+||+|+.+... . .++...++. ..++++|||
T Consensus 79 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~Sa 150 (171)
T 1upt_A 79 IYVVDSCDRDRIGISKS-ELVAMLEEEELRKAILVVFANKQDMEQAMT---S----SEMANSLGLPALKDRKWQIFKTSA 150 (171)
T ss_dssp EEEEETTCCTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCC---H----HHHHHHHTGGGCTTSCEEEEECCT
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHhchhhCCCEEEEEEECCCCcCCCC---H----HHHHHHhCchhccCCceEEEECcC
Confidence 99999999999988876 55544332 14899999999999976511 1 111222110 116999999
Q ss_pred cccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 163 LKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 163 ~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
++|. |++++++.+.+.+.+
T Consensus 151 ~~~~------------gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 151 TKGT------------GLDEAMEWLVETLKS 169 (171)
T ss_dssp TTCT------------THHHHHHHHHHHHHT
T ss_pred CCCc------------CHHHHHHHHHHHHhh
Confidence 9999 999999999887653
No 77
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.91 E-value=2e-23 Score=187.54 Aligned_cols=163 Identities=17% Similarity=0.201 Sum_probs=120.5
Q ss_pred CCCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccC
Q 010254 9 SGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRAD 88 (514)
Q Consensus 9 ~~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad 88 (514)
.....++.+||+|+|++|||||||+|+|++..+...+.++.+... ..+...++.+.+|||||.+++...+..+++.+|
T Consensus 15 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (188)
T 1zd9_A 15 VPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITKGNVTIKLWDIGGQPRFRSMWERYCRGVS 92 (188)
T ss_dssp ----CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEETTEEEEEEEECCSHHHHTTHHHHHTTCS
T ss_pred cccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeE--EEEEeCCEEEEEEECCCCHhHHHHHHHHHccCC
Confidence 344456789999999999999999999999887544433222211 124456789999999999988888889999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc------cCcEEEc
Q 010254 89 AVVLTYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE------IETCIEC 160 (514)
Q Consensus 89 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~ 160 (514)
++++|||++++.+++.+.. |+..+... ..+.|+++|+||+|+..... . ..+.+.+.. ..++++|
T Consensus 93 ~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~ 164 (188)
T 1zd9_A 93 AIVYMVDAADQEKIEASKN-ELHNLLDKPQLQGIPVLVLGNKRDLPGALD---E----KELIEKMNLSAIQDREICCYSI 164 (188)
T ss_dssp EEEEEEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTCCC---H----HHHHHHTTGGGCCSSCEEEEEC
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHhCcccCCCCEEEEEECCCCccCCC---H----HHHHHHhChhhhccCCeeEEEE
Confidence 9999999999999998876 55555432 25899999999999976411 1 112222210 1268999
Q ss_pred CccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 161 SALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 161 Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
||++|. |++++++.|.+.+..
T Consensus 165 SA~~g~------------gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 165 SCKEKD------------NIDITLQWLIQHSKS 185 (188)
T ss_dssp CTTTCT------------THHHHHHHHHHTCC-
T ss_pred ECCCCC------------CHHHHHHHHHHHHHh
Confidence 999999 999999999887643
No 78
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.91 E-value=2.2e-23 Score=190.13 Aligned_cols=163 Identities=21% Similarity=0.342 Sum_probs=127.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
...+||+|+|++|||||||+|+|++..+.....+..+... ....+....+.+.+|||||.+.+......+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 4579999999999999999999999887554433322222 22233444678999999999988888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
+|||++++.+++.+.. |+..+.... ++.|+++|+||+|+.+. +....+ ....++..++. +++++||++|.
T Consensus 86 lv~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~g~---- 156 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKM-WLQEIDRYATSTVLKLLVGNKCDLKDK-RVVEYD-VAKEFADANKM--PFLETSALDST---- 156 (206)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECTTCTTT-CCSCHH-HHHHHHHHTTC--CEEECCTTTCT----
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCccc-cccCHH-HHHHHHHHcCC--eEEEEeCCCCC----
Confidence 9999999999998876 888887653 57999999999999765 333332 33456655543 89999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhcC
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
|++++++.|.+.+..
T Consensus 157 --------gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 157 --------NVEDAFLTMARQIKE 171 (206)
T ss_dssp --------THHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHH
Confidence 999999988876653
No 79
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.90 E-value=2e-24 Score=199.49 Aligned_cols=167 Identities=16% Similarity=0.222 Sum_probs=130.3
Q ss_pred CCCCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhh
Q 010254 8 NSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELR 85 (514)
Q Consensus 8 ~~~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 85 (514)
.........+||+|+|++|||||||+|+|+.+.+...+.+..+.+. ....+....+.+.+|||||.+.+......+++
T Consensus 7 ~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 86 (221)
T 3gj0_A 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI 86 (221)
T ss_dssp CSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHT
T ss_pred ccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHh
Confidence 3444556789999999999999999999777665444444333222 23344456789999999999988888889999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccc
Q 010254 86 RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (514)
Q Consensus 86 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~ 165 (514)
++|++++|||++++.+++.+.. |+..+....+++|+++|+||+|+.+.. .. . ....+++..+. ++++|||++|
T Consensus 87 ~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~--~-~~~~~~~~~~~--~~~~~Sa~~~ 159 (221)
T 3gj0_A 87 QAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDRK-VK--A-KSIVFHRKKNL--QYYDISAKSN 159 (221)
T ss_dssp TCCEEEEEEETTCHHHHHTHHH-HHHHHHHHSTTCCEEEEEECTTSSSCS-SC--G-GGCCHHHHHTC--EEEECBGGGT
T ss_pred cCCEEEEEEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECCcccccc-cc--H-HHHHHHHHcCC--EEEEEeCCCC
Confidence 9999999999999999998875 999888877789999999999997652 11 1 22345555543 8999999999
Q ss_pred ccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 166 IQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 166 ~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
. |++++++.|.+.+..
T Consensus 160 ~------------gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 160 Y------------NFEKPFLWLARKLIG 175 (221)
T ss_dssp B------------TTTHHHHHHHHHHHT
T ss_pred C------------CHHHHHHHHHHHHHh
Confidence 9 899999988887654
No 80
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.90 E-value=4.4e-23 Score=180.81 Aligned_cols=153 Identities=14% Similarity=0.128 Sum_probs=115.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeC
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYAC 96 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~ 96 (514)
+||+++|++|||||||+|+|+++.+.... ++.+. ....+..++..+.+|||||++.+...+..+++++|++++|+|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~-~t~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 77 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGF--NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCC-CCSSC--CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCccc-CcCce--eEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 58999999999999999999998864322 21111 1223445678999999999999888888899999999999999
Q ss_pred CCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc------cCcEEEcCccccccc
Q 010254 97 DRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE------IETCIECSALKQIQV 168 (514)
Q Consensus 97 ~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~Sa~~~~~~ 168 (514)
+++.+++.+.. |+..+... .++.|+++|+||+|+.+.. .. ..+...++. ..++++|||++|.
T Consensus 78 ~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-- 147 (164)
T 1r8s_A 78 NDRERVNEARE-ELMRMLAEDELRDAVLLVFANKQDLPNAM---NA----AEITDKLGLHSLRHRNWYIQATCATSGD-- 147 (164)
T ss_dssp TCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCC---CH----HHHHHHTTGGGCSSCCEEEEECBTTTTB--
T ss_pred CCHHHHHHHHH-HHHHHHhchhhcCCeEEEEEECcCCcCCC---CH----HHHHHHhCcccccCccEEEEEcccCCCc--
Confidence 99999998876 66655442 2579999999999997641 11 122222211 1168999999999
Q ss_pred eecCCCCChhhHHHHHHHHHHHhc
Q 010254 169 KCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 169 ~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++.+.|.+.+.
T Consensus 148 ----------gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 148 ----------GLYEGLDWLSNQLR 161 (164)
T ss_dssp ----------THHHHHHHHHHHC-
T ss_pred ----------CHHHHHHHHHHHHh
Confidence 99999999987764
No 81
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.90 E-value=2.8e-24 Score=192.21 Aligned_cols=162 Identities=19% Similarity=0.304 Sum_probs=97.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
...+||+|+|++|||||||+|+|++..+.....++.+... ....+....+.+.+|||||.+.+......+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 4579999999999999999999998875433221111101 11223334588999999999988887888899999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
+|||++++.+++.+.. |+..+.... ++.|+++|+||+|+.+. +....+ ....+++.++. ++++|||++|.
T Consensus 86 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~~~Sa~~~~---- 156 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRN-WIRNIEEHASADVEKMILGNKCDVNDK-RQVSKE-RGEKLALDYGI--KFMETSAKANI---- 156 (183)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEEC--CCSC-CCSCHH-HHHHHHHHHTC--EEEECCC---C----
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECccCCcc-CcCCHH-HHHHHHHHcCC--eEEEEeCCCCC----
Confidence 9999999999988876 888877653 57999999999999765 333333 34566666654 89999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhc
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++.+.|.+.+.
T Consensus 157 --------~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 157 --------NVENAFFTLARDIK 170 (183)
T ss_dssp --------CHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHH
Confidence 89999888877654
No 82
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.3e-23 Score=194.15 Aligned_cols=166 Identities=22% Similarity=0.253 Sum_probs=124.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
....+||+|+|++|||||||+|+|++..+.....++.+... ....+....+.+.||||||++.+......+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 35679999999999999999999999887554433322221 2223334457999999999999888888899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccce
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVK 169 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~ 169 (514)
|+|||++++.+++.+.. |+..+.... .++|++||+||+|+... +.+..+ ....+++.++. +++++||+++.
T Consensus 90 ilV~D~~~~~s~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~~~Sa~~~~--- 161 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNH-WLSELRENADDNVAVGLIGNKSDLAHL-RAVPTE-ESKTFAQENQL--LFTETSALNSE--- 161 (223)
T ss_dssp EEEEC-CCHHHHHHHHH-HHHHHHHHCC--CEEEEEECCGGGGGG-CCSCHH-HHHHHHHHTTC--EEEECCCC-CC---
T ss_pred EEEEeCCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc-cccCHH-HHHHHHHHcCC--EEEEEeCCCCC---
Confidence 99999999999998875 888887653 47899999999999764 333333 34556666543 89999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHHhcCcc
Q 010254 170 CFNSPLQPSEIVGVKRVVQEKLREGV 195 (514)
Q Consensus 170 ~f~~~l~~~~i~~L~~~i~~~~~~~~ 195 (514)
|++++++.|.+.+....
T Consensus 162 ---------gi~~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 162 ---------NVDKAFEELINTIYQKV 178 (223)
T ss_dssp ---------CHHHHHHHHHHHHTTCC
T ss_pred ---------CHHHHHHHHHHHHHHHh
Confidence 99999999988876543
No 83
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1.6e-23 Score=188.00 Aligned_cols=163 Identities=10% Similarity=0.156 Sum_probs=117.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
++.++|+|+|++|||||||+|+|+++++. .+.++.+.+.. .+..++..+.+|||||++++......+++++|++++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVE--EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCE--EEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 46799999999999999999999988864 32222222112 2333568999999999999888888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHH-Hhc-cCcEEEcCccccccce
Q 010254 94 YACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQ-FRE-IETCIECSALKQIQVK 169 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~-~~~~i~~Sa~~~~~~~ 169 (514)
+|++++.+++.+.. |+..+.+. ..+.|+++|+||+|+.+. ...++....+... +.. ..++++|||++|.
T Consensus 91 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~--- 163 (187)
T 1zj6_A 91 VDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQWHIQACCALTGE--- 163 (187)
T ss_dssp EETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTGGGCCSSCEEEEECBTTTTB---
T ss_pred EeCCCHHHHHHHHH-HHHHHHhchhhCCCeEEEEEECCCCcCC---CCHHHHHHHhChhhhcCCCcEEEEccCCCCc---
Confidence 99999999999886 66666553 258999999999999764 1111111111110 111 1178999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHHhcCcc
Q 010254 170 CFNSPLQPSEIVGVKRVVQEKLREGV 195 (514)
Q Consensus 170 ~f~~~l~~~~i~~L~~~i~~~~~~~~ 195 (514)
|++++++.|.+.+....
T Consensus 164 ---------gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 164 ---------GLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp ---------THHHHHHHHHHHHCC--
T ss_pred ---------CHHHHHHHHHHHHHHHh
Confidence 99999999999886543
No 84
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=191.11 Aligned_cols=162 Identities=23% Similarity=0.264 Sum_probs=118.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
...+||+|+|++|||||||+|+|++..+.....+..+... ....+....+.+.||||||.+.+......+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 5679999999999999999999999886544333222211 22233344589999999999888888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
+|||++++.+++.+.. |+..+.... ++.|+++|+||+|+... +....+ ....+++.++. ++++|||++|.
T Consensus 103 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~~~SA~~g~---- 173 (200)
T 2o52_A 103 LVYDITSRETYNSLAA-WLTDARTLASPNIVVILCGNKKDLDPE-REVTFL-EASRFAQENEL--MFLETSALTGE---- 173 (200)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHTCTTCEEEEEEECGGGGGG-CCSCHH-HHHHHHHHTTC--EEEEECTTTCT----
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCCcccc-cccCHH-HHHHHHHHcCC--EEEEEeCCCCC----
Confidence 9999999999988875 887776643 57999999999999764 333333 23445555543 89999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhc
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.+.
T Consensus 174 --------gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 174 --------NVEEAFLKCARTIL 187 (200)
T ss_dssp --------THHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHH
Confidence 89999888877654
No 85
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.90 E-value=1.8e-23 Score=190.79 Aligned_cols=164 Identities=21% Similarity=0.278 Sum_probs=123.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
....++|+|+|++|||||||+|+|++..+...+.++.+... ....+....+.+.||||||.+.+......+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 34679999999999999999999999887554443322211 2223344568999999999998888888899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-----CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccc
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRLE-----VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQ 165 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~ 165 (514)
|+|||++++.+++.+.. |+..+.... .+.|+++|+||+|+... ....+ ....++...... +++++||++|
T Consensus 85 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~-~~~~~~~~~~~~-~~~~~Sa~~g 159 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVATK-RAQAWCYSKNNI-PYFETSAKEA 159 (207)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSCHH-HHHHHHHHTTSC-CEEECBTTTT
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcccccCCCCcEEEEEECCCCccc--ccCHH-HHHHHHHhcCCc-eEEEEeCCCC
Confidence 99999999999988865 777765542 37899999999999742 22222 334444433233 8999999999
Q ss_pred ccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 166 IQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 166 ~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
. |++++++.|.+.+..
T Consensus 160 ~------------gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 160 I------------NVEQAFQTIARNALK 175 (207)
T ss_dssp B------------SHHHHHHHHHHHHHH
T ss_pred C------------CHHHHHHHHHHHHHH
Confidence 9 999999998877653
No 86
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.90 E-value=5.7e-23 Score=184.90 Aligned_cols=155 Identities=18% Similarity=0.284 Sum_probs=115.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
..+.++|+++|++|||||||+|+|.++.+.. +.++.+.+. ..+..++..+.+|||||++.+......+++.+|++++
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS--EELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCEE--EEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCCe--EEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 3567899999999999999999999988643 333233222 2333446899999999999888888889999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc-------------cCcE
Q 010254 93 TYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE-------------IETC 157 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 157 (514)
|+|++++.+++.+.. |+..+.+. ..++|+++|+||+|+... ...++ +.+.+.. ..++
T Consensus 97 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T 1m2o_B 97 LVDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNA---VSEAE----LRSALGLLNTTGSQRIEGQRPVEV 168 (190)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTC---CCHHH----HHHHTTCSSCCC---CCSSCCEEE
T ss_pred EEECCChHHHHHHHH-HHHHHHcchhhcCCCEEEEEECCCCcCC---CCHHH----HHHHhCCccccccccccccceEEE
Confidence 999999999998886 66665543 257999999999999763 22221 2222211 1269
Q ss_pred EEcCccccccceecCCCCChhhHHHHHHHHHHH
Q 010254 158 IECSALKQIQVKCFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 158 i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~ 190 (514)
++|||++|. |++++.+.|.+.
T Consensus 169 ~~~Sa~~g~------------gi~~l~~~l~~~ 189 (190)
T 1m2o_B 169 FMCSVVMRN------------GYLEAFQWLSQY 189 (190)
T ss_dssp EECBTTTTB------------SHHHHHHHHHTT
T ss_pred EEeECCcCC------------CHHHHHHHHHhh
Confidence 999999999 999999988754
No 87
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.90 E-value=4.7e-23 Score=184.74 Aligned_cols=158 Identities=13% Similarity=0.154 Sum_probs=118.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
++.++|+|+|++|||||||+|+|++++ ...+.++.+.+.. .+..++..+.+|||||++++...+..+++++|++++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~--~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIK--TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 92 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEE--EEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 568999999999999999999999887 3333333222112 2333578999999999998888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHh------ccCcEEEcCcccc
Q 010254 94 YACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR------EIETCIECSALKQ 165 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~Sa~~~ 165 (514)
+|++++.+++.+.. |+..+.+. ..+.|+++|+||+|+.+.. .. ..+.+.+. ...++++|||++|
T Consensus 93 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (186)
T 1ksh_A 93 VDSADRQRMQDCQR-ELQSLLVEERLAGATLLIFANKQDLPGAL---SC----NAIQEALELDSIRSHHWRIQGCSAVTG 164 (186)
T ss_dssp EETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCC---CH----HHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred EECcCHHHHHHHHH-HHHHHHhChhcCCCcEEEEEeCccCCCCC---CH----HHHHHHhChhhccCCceEEEEeeCCCC
Confidence 99999999998876 55555443 2579999999999997651 11 11222221 0117899999999
Q ss_pred ccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 166 IQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 166 ~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
. |++++.+.+.+.+++.
T Consensus 165 ~------------gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 165 E------------DLLPGIDWLLDDISSR 181 (186)
T ss_dssp T------------THHHHHHHHHHHHHTC
T ss_pred C------------CHHHHHHHHHHHHHhc
Confidence 9 9999999998877643
No 88
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.90 E-value=4.6e-23 Score=186.76 Aligned_cols=158 Identities=22% Similarity=0.298 Sum_probs=111.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
.+.++|+++|++|||||||+|+|.++++.. +.++.+.+. ..+..++..+.+|||||++.+...+..+++.+|++++|
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~--~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTS--EELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFL 99 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCcee--EEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEE
Confidence 557899999999999999999999988643 333232222 23334458999999999998888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHh---------------ccCc
Q 010254 94 YACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR---------------EIET 156 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 156 (514)
+|++++.+++.+.. |+..+.+. ..++|+++|+||+|+... ...++ ...+..... ...+
T Consensus 100 ~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (198)
T 1f6b_A 100 VDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPEA---ISEER-LREMFGLYGQTTGKGSVSLKELNARPLE 174 (198)
T ss_dssp EETTCGGGHHHHHH-HHHHHHTCGGGTTSCEEEEEECTTSTTC---CCHHH-HHHHHTCTTTCCCSSCCCTTTCCSCCEE
T ss_pred EECCCHHHHHHHHH-HHHHHHhCcccCCCcEEEEEECCCcccc---CCHHH-HHHHhCcccccccccccccccccCceEE
Confidence 99999999998886 66666543 257999999999999753 22222 222222110 1126
Q ss_pred EEEcCccccccceecCCCCChhhHHHHHHHHHHHh
Q 010254 157 CIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 157 ~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
+++|||++|. |++++.+.|.+.+
T Consensus 175 ~~~~SA~~g~------------gv~~l~~~l~~~l 197 (198)
T 1f6b_A 175 VFMCSVLKRQ------------GYGEGFRWMAQYI 197 (198)
T ss_dssp EEECBTTTTB------------SHHHHHHHHHTTC
T ss_pred EEEEECCCCC------------CHHHHHHHHHHhc
Confidence 9999999999 9999999887643
No 89
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.90 E-value=3.2e-23 Score=185.04 Aligned_cols=163 Identities=10% Similarity=0.156 Sum_probs=114.6
Q ss_pred CCCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccC
Q 010254 9 SGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRAD 88 (514)
Q Consensus 9 ~~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad 88 (514)
......+.+||+|+|++|||||||+|+|++.++ ..+.++.+.+.. .+..++..+.+|||||++++......+++++|
T Consensus 14 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (181)
T 2h17_A 14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE--EIVINNTRFLMWDIGGQESLRSSWNTYYTNTE 90 (181)
T ss_dssp -------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCE--EEEETTEEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred ccCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeE--EEEECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 334446789999999999999999999999886 222222222222 23335689999999999998888889999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHH-Hhcc-CcEEEcCccc
Q 010254 89 AVVLTYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQ-FREI-ETCIECSALK 164 (514)
Q Consensus 89 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~-~~~i~~Sa~~ 164 (514)
++++|+|++++.+++.+.. |+..+.+. ..++|+++|+||+|+.... ..++....+... .... .++++|||++
T Consensus 91 ~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 166 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKECM---TVAEISQFLKLTSIKDHQWHIQACCALT 166 (181)
T ss_dssp EEEEEEETTCTTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECBTTT
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHhChhhCCCeEEEEEECCCcccCC---CHHHHHHHhCcccccCCceEEEEccCCC
Confidence 9999999999999998876 55555443 2589999999999997641 111111111000 0001 1789999999
Q ss_pred cccceecCCCCChhhHHHHHHHHHHH
Q 010254 165 QIQVKCFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 165 ~~~~~~f~~~l~~~~i~~L~~~i~~~ 190 (514)
|. |++++++.|.+.
T Consensus 167 g~------------gi~~l~~~l~~~ 180 (181)
T 2h17_A 167 GE------------GLCQGLEWMMSR 180 (181)
T ss_dssp TB------------THHHHHHHHHTC
T ss_pred Cc------------CHHHHHHHHHhh
Confidence 99 999999888753
No 90
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=6.3e-23 Score=185.59 Aligned_cols=161 Identities=24% Similarity=0.315 Sum_probs=121.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
+..+||+|+|++|||||||+|+|+++.+...+.++..... ....+....+.+.+|||||.+. ......+++.+|++++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iil 104 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVL 104 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEE
Confidence 5679999999999999999999999887555443332211 2233445578899999999988 6677888999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 93 TYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
|||++++.+++.+.. |+..+... ..+.|+++|+||+|+... +....+ ....+++.++. ++++|||++|.+
T Consensus 105 v~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~~~Sa~~g~~--- 176 (196)
T 2atv_A 105 VYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHS-RQVSTE-EGEKLATELAC--AFYECSACTGEG--- 176 (196)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGG-CCSCHH-HHHHHHHHHTS--EEEECCTTTCTT---
T ss_pred EEECcCHHHHHHHHH-HHHHHHHhhCCCCCcEEEEEECcccccc-cccCHH-HHHHHHHHhCC--eEEEECCCcCCc---
Confidence 999999999988875 77777654 247999999999999765 333333 34556666653 899999999961
Q ss_pred cCCCCChhhHHHHHHHHHHHh
Q 010254 171 FNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~ 191 (514)
|++++++.|.+.+
T Consensus 177 --------gi~~l~~~l~~~i 189 (196)
T 2atv_A 177 --------NITEIFYELCREV 189 (196)
T ss_dssp --------CHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHH
Confidence 5677777766554
No 91
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.90 E-value=6.7e-23 Score=184.46 Aligned_cols=163 Identities=17% Similarity=0.267 Sum_probs=117.0
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCE
Q 010254 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADT-FPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (514)
Q Consensus 11 ~~~~~~~~I~ivG~~nvGKSsLin~l~~~~-~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ 89 (514)
....+.+||+|+|++|||||||+|+|++.. +...+.++.+. ....+..++..+.+|||||.+.+...+..+++++|+
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 344678999999999999999999999987 33333332221 122334456899999999999998888899999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcC----CCCcEEEEEecccCcccccchhHhhhhHHHH--HHHhc-cCcEEEcCc
Q 010254 90 VVLTYACDRPETLDELSTFWLPELRRLE----VKVPVIVVGCKLDLRDENQQVSLEQVMMPIM--QQFRE-IETCIECSA 162 (514)
Q Consensus 90 ii~v~d~~~~~s~~~~~~~~~~~l~~~~----~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~--~~~~~-~~~~i~~Sa 162 (514)
+++|+|++++.+++.+.. |+..+.... .++|+++|+||+|+... ...++. .... ..+.. ..++++|||
T Consensus 94 ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~Sa 168 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKE-ELDTLLNHPDIKHRRIPILFFANKMDLRDA---VTSVKV-SQLLCLENIKDKPWHICASDA 168 (190)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHSTTTTTSCCCEEEEEECTTSTTC---CCHHHH-HHHHTGGGCCSSCEEEEECBT
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHhChhhccCCCeEEEEEeCcCcccC---CCHHHH-HHHhChhhccCCceEEEEccC
Confidence 999999999999988876 555554432 47999999999999764 111211 1111 11110 127899999
Q ss_pred cccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 163 LKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 163 ~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
++|. |++++++.|.+.+.
T Consensus 169 ~~~~------------gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 169 IKGE------------GLQEGVDWLQDQIQ 186 (190)
T ss_dssp TTTB------------THHHHHHHHHHHC-
T ss_pred CCCc------------CHHHHHHHHHHHHH
Confidence 9999 99999999987664
No 92
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.90 E-value=7.6e-24 Score=193.41 Aligned_cols=162 Identities=17% Similarity=0.197 Sum_probs=94.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCCC--cccccceeCC--eeEEEEEeCCCCccchhhHHHhhhcc
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAAD--TFPANVPPVLPP--TRLPEDFYPD--RVPITIIDTPSSVEDRGKLGEELRRA 87 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~--~~~~~~~~~~~~--tt~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~a 87 (514)
+..++|+|+|++|||||||+|+|++. .+...+.++.+. ......+... .+.+.+|||||++.+......+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 56799999999999999999999998 554333332221 1122233333 78999999999998888888899999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHHhcCC----CCcEEEEEecccCcc-cccchhHhhhhHHHHHHHhccCcEEEcCc
Q 010254 88 DAVVLTYACDRPETLDELSTFWLPELRRLEV----KVPVIVVGCKLDLRD-ENQQVSLEQVMMPIMQQFREIETCIECSA 162 (514)
Q Consensus 88 d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~----~~pvilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 162 (514)
|++|+|||++++.+++.+.. |+..+..... ++|+++|+||+|+.. . +.+..+ ....+++.++. ++++|||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~-~~v~~~-~~~~~~~~~~~--~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKA-WFELLKSARPDRERPLRAVLVANKTDLPPQR-HQVRLD-MAQDWATTNTL--DFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHH-HHHHHHHHCSCTTSCCEEEEEEECC--------CCCHH-HHHHHHHHTTC--EEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHH-HHHHHHHhhcccccCCcEEEEEECcccchhh-ccCCHH-HHHHHHHHcCC--EEEEecc
Confidence 99999999999999998885 8888877543 799999999999987 3 333333 34566666653 8999999
Q ss_pred cc-cccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 163 LK-QIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 163 ~~-~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
++ +. |++++++.|.+.+.
T Consensus 173 ~~~~~------------gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 173 NPPGK------------DADAPFLSIATTFY 191 (208)
T ss_dssp -------------------CHHHHHHHHHHH
T ss_pred CCCCc------------CHHHHHHHHHHHHH
Confidence 99 99 88888888877654
No 93
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.90 E-value=1.5e-22 Score=195.83 Aligned_cols=166 Identities=19% Similarity=0.186 Sum_probs=127.7
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCC-eeEEEEEeCCCCccch---------
Q 010254 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPD-RVPITIIDTPSSVEDR--------- 77 (514)
Q Consensus 11 ~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~-~~~~~l~Dt~G~~~~~--------- 77 (514)
+.......|+|+|+||||||||+|+|++.++. +.+..+++|.. ..+..+ +..+.+|||||+.+..
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~--i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~ 82 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVS--IISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSM 82 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCS--CCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCcc--ccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHH
Confidence 44567789999999999999999999999853 34445555532 234445 7899999999997654
Q ss_pred -hhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCc
Q 010254 78 -GKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIET 156 (514)
Q Consensus 78 -~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (514)
.....+++.+|++++|+|++++.+..+... |+..+... +.|+++|+||+|+... + ....+....+.+.++...+
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~-~~~~l~~~--~~pvilV~NK~Dl~~~-~-~~~~~~~~~l~~~~~~~~~ 157 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEI-YQNFIKPL--NKPVIVVINKIDKIGP-A-KNVLPLIDEIHKKHPELTE 157 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHTGGG--CCCEEEEEECGGGSSS-G-GGGHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHH-HHHHHHhc--CCCEEEEEECccCCCC-H-HHHHHHHHHHHHhccCCCe
Confidence 345677899999999999999888877663 68888876 8999999999999732 1 2233344556666643448
Q ss_pred EEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCcc
Q 010254 157 CIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREGV 195 (514)
Q Consensus 157 ~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~ 195 (514)
+++|||++|. |+++|++.|.+.++++.
T Consensus 158 i~~vSA~~g~------------gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 158 IVPISALKGA------------NLDELVKTILKYLPEGE 184 (308)
T ss_dssp EEECBTTTTB------------SHHHHHHHHHHHSCBCC
T ss_pred EEEEeCCCCC------------CHHHHHHHHHHhCccCC
Confidence 9999999999 99999999999997653
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.90 E-value=5.2e-23 Score=183.62 Aligned_cols=156 Identities=18% Similarity=0.224 Sum_probs=115.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
...++|+|+|++|||||||+|+|.+..+.. +.++.+ .+. ..+..+++.+.+|||||++.+...+..+++.+|++++|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-~~~t~g-~~~-~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 90 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQG-FNI-KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYV 90 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETT-EEE-EEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc-ccCcCC-eEE-EEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 567999999999999999999999886422 222222 111 12233478999999999999888888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc------cCcEEEcCcccc
Q 010254 94 YACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE------IETCIECSALKQ 165 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~Sa~~~ 165 (514)
||++++.+++.+.. |+..+... ..+.|+++|+||+|+.+.. . . .++.+.++. ..++++|||++|
T Consensus 91 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~--~----~~~~~~~~~~~~~~~~~~~~~~Sa~~g 162 (181)
T 1fzq_A 91 IDSADRKRFEETGQ-ELTELLEEEKLSCVPVLIFANKQDLLTAA-P--A----SEIAEGLNLHTIRDRVWQIQSCSALTG 162 (181)
T ss_dssp EETTCGGGHHHHHH-HHHHHTTCGGGTTCCEEEEEECTTSTTCC-C--H----HHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred EECcCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcCcccCC-C--H----HHHHHHhCchhccCCceEEEEccCCCC
Confidence 99999999988876 65554332 2479999999999997651 1 1 122222210 116899999999
Q ss_pred ccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 166 IQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 166 ~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
. |++++.+.+.+.+.
T Consensus 163 ~------------gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 163 E------------GVQDGMNWVCKNVN 177 (181)
T ss_dssp T------------THHHHHHHHHHTC-
T ss_pred C------------CHHHHHHHHHHHHH
Confidence 9 99999999987664
No 95
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.90 E-value=5.9e-23 Score=185.14 Aligned_cols=157 Identities=13% Similarity=0.138 Sum_probs=113.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
.++.+||+|+|++|||||||+|+|+++.+... .++.+. ....+..+++.+.+|||||.+.+...+..+++++|++++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-~~t~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGF--NVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEE-EEETTE--EEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcccc-CCcCce--eEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 45689999999999999999999998876422 111111 112344467899999999999988888899999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc------cCcEEEcCccc
Q 010254 93 TYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE------IETCIECSALK 164 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~Sa~~ 164 (514)
|||++++.+++.+.. |+..+... ..+.|+++|+||+|+.+.. . ..++.+.++. ..++++|||++
T Consensus 103 v~D~~~~~s~~~~~~-~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~----~~~i~~~~~~~~~~~~~~~~~~~SA~~ 174 (192)
T 2b6h_A 103 VVDSNDRERVQESAD-ELQKMLQEDELRDAVLLVFANKQDMPNAM---P----VSELTDKLGLQHLRSRTWYVQATCATQ 174 (192)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCC---C----HHHHHHHTTGGGCSSCCEEEEECBTTT
T ss_pred EEECCCHHHHHHHHH-HHHHHhcccccCCCeEEEEEECCCCCCCC---C----HHHHHHHhCcccccCCceEEEECcCCC
Confidence 999999999998876 66655442 2479999999999997641 1 1222222221 01689999999
Q ss_pred cccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 165 QIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 165 ~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|. |++++.+.|.+.+.
T Consensus 175 g~------------gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 175 GT------------GLYDGLDWLSHELS 190 (192)
T ss_dssp TB------------THHHHHHHHHHHTT
T ss_pred cC------------CHHHHHHHHHHHHh
Confidence 99 99999999987664
No 96
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.89 E-value=1.9e-23 Score=192.20 Aligned_cols=162 Identities=14% Similarity=0.252 Sum_probs=122.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCC----------eeEEEEEeCCCCccchhhHH
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPD----------RVPITIIDTPSSVEDRGKLG 81 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~----------~~~~~l~Dt~G~~~~~~~~~ 81 (514)
...+||+|+|++|||||||+|+|++..+...+.++.+... ....+... .+.+.||||||.+.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 5679999999999999999999999886433222111000 12223333 67899999999998888888
Q ss_pred HhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcC--CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEE
Q 010254 82 EELRRADAVVLTYACDRPETLDELSTFWLPELRRLE--VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIE 159 (514)
Q Consensus 82 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (514)
.+++.+|++|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+... +.... +....+++.++. ++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~-~~v~~-~~~~~~~~~~~~--~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQ-REVNE-RQARELADKYGI--PYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGG-CCSCH-HHHHHHHHHTTC--CEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCCEEEEEECCccccc-cccCH-HHHHHHHHHCCC--cEEE
Confidence 99999999999999999999888775 877766543 57999999999999764 33332 334556666654 8999
Q ss_pred cCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 160 CSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 160 ~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|||+++. |++++++.|.+.+.
T Consensus 178 ~Sa~~g~------------gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 178 TSAATGQ------------NVEKAVETLLDLIM 198 (217)
T ss_dssp EBTTTTB------------THHHHHHHHHHHHH
T ss_pred EECCCCC------------CHHHHHHHHHHHHH
Confidence 9999999 88888888877553
No 97
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.89 E-value=1.2e-22 Score=178.29 Aligned_cols=152 Identities=14% Similarity=0.172 Sum_probs=109.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccch------hhHHHhh
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDR------GKLGEEL 84 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~ 84 (514)
|+.++|+|+|++|||||||+|+|++..+... ..+++|+. ..+..++..+.+|||||++.+. .....++
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~---~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 77 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIG---NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYI 77 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC--------CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCeecc---CCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHH
Confidence 3568999999999999999999999764322 23344422 2233446789999999998764 2334555
Q ss_pred h--ccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCc
Q 010254 85 R--RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSA 162 (514)
Q Consensus 85 ~--~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 162 (514)
+ ++|++++|+|+++.. ... .|+..+.+. ++|+++|+||+|+... +... .....+++.++. ++++|||
T Consensus 78 ~~~~~~~~i~v~D~~~~~---~~~-~~~~~~~~~--~~p~ilv~nK~Dl~~~-~~~~--~~~~~~~~~~~~--~~~~~SA 146 (165)
T 2wji_A 78 INEKPDLVVNIVDATALE---RNL-YLTLQLMEM--GANLLLALNKMDLAKS-LGIE--IDVDKLEKILGV--KVVPLSA 146 (165)
T ss_dssp HHHCCSEEEEEEETTCHH---HHH-HHHHHHHHT--TCCEEEEEECHHHHHH-TTCC--CCHHHHHHHHTS--CEEECBG
T ss_pred hcCCCCEEEEEecCCchh---HhH-HHHHHHHhc--CCCEEEEEEchHhccc-cChh--hHHHHHHHHhCC--CEEEEEc
Confidence 4 899999999988643 333 377777665 8999999999998654 2222 124566677664 8999999
Q ss_pred cccccceecCCCCChhhHHHHHHHHHHHh
Q 010254 163 LKQIQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 163 ~~~~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
++|. |++++++.+.+.+
T Consensus 147 ~~~~------------~v~~l~~~l~~~~ 163 (165)
T 2wji_A 147 AKKM------------GIEELKKAISIAV 163 (165)
T ss_dssp GGTB------------SHHHHHHHHHHHT
T ss_pred CCCC------------CHHHHHHHHHHHh
Confidence 9999 9999999988765
No 98
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.89 E-value=6.9e-23 Score=185.35 Aligned_cols=166 Identities=17% Similarity=0.118 Sum_probs=110.8
Q ss_pred CCCCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc--cee-CCeeEEEEEeCCCCccchhhH---H
Q 010254 8 NSGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE--DFY-PDRVPITIIDTPSSVEDRGKL---G 81 (514)
Q Consensus 8 ~~~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~--~~~-~~~~~~~l~Dt~G~~~~~~~~---~ 81 (514)
.........+||+|+|++|||||||+|++.++.. .........++... .+. ...+.+.+|||||.+.+.... .
T Consensus 12 ~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 90 (196)
T 3llu_A 12 ENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE 90 (196)
T ss_dssp --------CCEEEEEESTTSSHHHHHHHHHSCCC-GGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH
T ss_pred CCCcccCcceEEEEECCCCCCHHHHHHHHHhcCC-CcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc
Confidence 3445557789999999999999999999988542 22111111112112 222 456899999999999887776 7
Q ss_pred HhhhccCEEEEEEeCCCc--ccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc------cchhHhhhhHHHHH----
Q 010254 82 EELRRADAVVLTYACDRP--ETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN------QQVSLEQVMMPIMQ---- 149 (514)
Q Consensus 82 ~~~~~ad~ii~v~d~~~~--~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~------~~~~~~~~~~~~~~---- 149 (514)
.+++++|++|+|||++++ .++..+.. |+..+....++.|+++|+||+|+.+.. +.+.. +....+++
T Consensus 91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~-~~~~~~~~~~~~ 168 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDDYMEALTRLHI-TVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQ-RANDDLADAGLE 168 (196)
T ss_dssp HHHHTCSEEEEEEETTSCCHHHHHHHHH-HHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHH-HHHHHHHHTTCT
T ss_pred cccccCCEEEEEEECCCchHHHHHHHHH-HHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHH-HHHHHHHHhhhh
Confidence 899999999999999987 44444443 555554445689999999999987642 11111 12233444
Q ss_pred HHhccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHh
Q 010254 150 QFREIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 150 ~~~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
.++. ++++|||++ . |++++.+.+.+.+
T Consensus 169 ~~~~--~~~e~Sa~~-~------------~v~~~f~~l~~~l 195 (196)
T 3llu_A 169 KLHL--SFYLTSIYD-H------------SIFEAFSKVVQKL 195 (196)
T ss_dssp TSCE--EEEEECTTS-T------------HHHHHHHHHHHHT
T ss_pred cCCc--ceEEEEech-h------------hHHHHHHHHHHHh
Confidence 2222 799999999 9 9999998887643
No 99
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.89 E-value=1.1e-23 Score=194.06 Aligned_cols=165 Identities=17% Similarity=0.253 Sum_probs=122.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccccee---CCeeEEEEEeCCCCccchhhHHHhhhccCE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFY---PDRVPITIIDTPSSVEDRGKLGEELRRADA 89 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~---~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ 89 (514)
....+||+|+|++|||||||+|+|+++.+...+.++.+.+.....+. ...+.+.+|||||++.+......++..+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 34679999999999999999999999886544444333333222222 223789999999999888888889999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccc
Q 010254 90 VVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (514)
Q Consensus 90 ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~ 168 (514)
+|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+.+. +....+ ....++...+. ++++|||++|.
T Consensus 88 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~--~~~~~Sa~~g~-- 160 (218)
T 4djt_A 88 AILFFDVTSRITCQNLAR-WVKEFQAVVGNEAPIVVCANKIDIKNR-QKISKK-LVMEVLKGKNY--EYFEISAKTAH-- 160 (218)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHCSSSCEEEEEECTTCC-----CCHH-HHHHHTTTCCC--EEEEEBTTTTB--
T ss_pred EEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCccc-cccCHH-HHHHHHHHcCC--cEEEEecCCCC--
Confidence 999999999999988875 888877654 35899999999999764 222222 22333333322 79999999999
Q ss_pred eecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 169 KCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 169 ~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
|++++++.|.+.+...
T Consensus 161 ----------gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 161 ----------NFGLPFLHLARIFTGR 176 (218)
T ss_dssp ----------TTTHHHHHHHHHHHCC
T ss_pred ----------CHHHHHHHHHHHHhcc
Confidence 9999999988877543
No 100
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.89 E-value=1.2e-22 Score=183.04 Aligned_cols=161 Identities=23% Similarity=0.252 Sum_probs=114.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCcc-chhhHHHhhhccC
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTF--PANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVE-DRGKLGEELRRAD 88 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~--~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~ad 88 (514)
+..+||+|+|++|||||||+|+|++... ...+.+ .+..+ ....++...+.+.+|||+|.+. .......+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEV-LGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GG-GCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccc-cceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 4469999999999999999999997542 222221 11111 2223444566788999999875 3444566788999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccc
Q 010254 89 AVVLTYACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (514)
Q Consensus 89 ~ii~v~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~ 166 (514)
++++|||++++.+++.+.. |...+... .++.|+++|+||+|+... +....++ ...++..++. ++++|||++|.
T Consensus 83 ~~i~v~dv~~~~s~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~-r~v~~~~-~~~~a~~~~~--~~~e~SA~~g~ 157 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRX-REVSVSE-GRAXAVVFDX--KFIETSAAVQH 157 (192)
T ss_dssp EEEEEEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECTTCGGG-CCSCHHH-HHHHHHHTTC--EEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCeEEEEEechhhhcc-ccccHHH-HHHHHHHhCC--ceEEeccccCC
Confidence 9999999999999998875 77766653 247999999999999764 4443332 2344455443 79999999999
Q ss_pred cceecCCCCChhhHHHHHHHHHHHhc
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++.+.+.+.+.
T Consensus 158 ------------~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 158 ------------NVKELFEGIVRQVR 171 (192)
T ss_dssp ------------SHHHHHHHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHH
Confidence 89999888877653
No 101
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.89 E-value=5.9e-23 Score=185.80 Aligned_cols=162 Identities=15% Similarity=0.148 Sum_probs=116.8
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC------CCccc-------cc-ceeCCeeEEEEEeCCCCccch
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVL------PPTRL-------PE-DFYPDRVPITIIDTPSSVEDR 77 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~------~~tt~-------~~-~~~~~~~~~~l~Dt~G~~~~~ 77 (514)
.....+||+|+|++|||||||++++.+... ..+.+.. ...|+ .. .+....+.+.+|||||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVP-EGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSC-GGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhcc-ccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 345679999999999999999987776542 2221110 11121 11 334557899999999999999
Q ss_pred hhHHHhhhccCEEEEEEeCCC------cccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHH
Q 010254 78 GKLGEELRRADAVVLTYACDR------PETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF 151 (514)
Q Consensus 78 ~~~~~~~~~ad~ii~v~d~~~------~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 151 (514)
.....+++++|++|+|||+++ ..++..+.. |+..++...++.|+++|+||+|+.+. ...+ ....+++.+
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~-~l~~~~~~~~~~piilv~NK~Dl~~~---~~~~-~~~~~~~~~ 163 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-NLAEYGLTLDDVPIVIQVNKRDLPDA---LPVE-MVRAVVDPE 163 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHH-HHHHTTCCTTSSCEEEEEECTTSTTC---CCHH-HHHHHHCTT
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHH-HHHhhccccCCCCEEEEEEchhcccc---cCHH-HHHHHHHhc
Confidence 999999999999999999994 445555553 66666544468999999999999764 2222 234444444
Q ss_pred hccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 152 REIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 152 ~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
+. .++++|||++|. |++++++.|.+.+.
T Consensus 164 ~~-~~~~~~Sa~~~~------------gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 164 GK-FPVLEAVATEGK------------GVFETLKEVSRLVL 191 (198)
T ss_dssp CC-SCEEECBGGGTB------------THHHHHHHHHHHHH
T ss_pred CC-ceEEEEecCCCc------------CHHHHHHHHHHHHH
Confidence 32 279999999999 99999988877654
No 102
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.89 E-value=4.5e-22 Score=191.16 Aligned_cols=160 Identities=23% Similarity=0.243 Sum_probs=116.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccc--------hhhHHH
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVED--------RGKLGE 82 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~ 82 (514)
.+..+|+|+|+||||||||+|+|++.++. +++..++||.. ..+..++..+.+|||||+.+. ......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~--ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVA--PISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCS--CCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCcee--eecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 34568999999999999999999999853 33344455522 233455789999999999763 334556
Q ss_pred hhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCc
Q 010254 83 ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSA 162 (514)
Q Consensus 83 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 162 (514)
+++.+|++++|+|++++.+..+ ..+...++...++.|+++|+||+|+... +.. +....+.+..+.+++++||
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~-~~~-----~~~~~~~~~~~~~~~~iSA 154 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKY-PEE-----AMKAYHELLPEAEPRMLSA 154 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSS-HHH-----HHHHHHHTSTTSEEEECCT
T ss_pred HHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCc-hHH-----HHHHHHHhcCcCcEEEEeC
Confidence 7899999999999998765543 3245667665457999999999999765 110 1222333322337899999
Q ss_pred cccccceecCCCCChhhHHHHHHHHHHHhcCcc
Q 010254 163 LKQIQVKCFNSPLQPSEIVGVKRVVQEKLREGV 195 (514)
Q Consensus 163 ~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~ 195 (514)
++|. |+++|.+.|.+.++++.
T Consensus 155 ~~g~------------gv~~l~~~l~~~l~~~~ 175 (301)
T 1wf3_A 155 LDER------------QVAELKADLLALMPEGP 175 (301)
T ss_dssp TCHH------------HHHHHHHHHHTTCCBCC
T ss_pred CCCC------------CHHHHHHHHHHhcccCC
Confidence 9999 99999999999887543
No 103
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.88 E-value=8.4e-23 Score=181.58 Aligned_cols=164 Identities=15% Similarity=0.102 Sum_probs=113.6
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
+..+.++|+|+|++|||||||+|+|++..+.....+..........+...+..+.+|||||++.+......++..+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 45678999999999999999999999988654332211111122234445678999999999988887778889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhh---HHHHHHHhccCcEEEcCccccccc
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVM---MPIMQQFREIETCIECSALKQIQV 168 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~Sa~~~~~~ 168 (514)
+|+|++++....... ++..+... ++|+++|+||+|+.... ........ ..+...++...++++|||++|.
T Consensus 84 ~v~d~~~~~~~~~~~--~l~~~~~~--~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-- 156 (178)
T 2lkc_A 84 LVVAADDGVMPQTVE--AINHAKAA--NVPIIVAINKMDKPEAN-PDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKE-- 156 (178)
T ss_dssp EEEETTCCCCHHHHH--HHHHHGGG--SCCEEEEEETTTSSCSC-HHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSH--
T ss_pred EEEECCCCCcHHHHH--HHHHHHhC--CCCEEEEEECccCCcCC-HHHHHHHHHhcCcChhHcCCcccEEEEecCCCC--
Confidence 999998865544443 44444443 79999999999997641 11111000 0001111111279999999999
Q ss_pred eecCCCCChhhHHHHHHHHHHHhc
Q 010254 169 KCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 169 ~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|+++|++.|.+.+.
T Consensus 157 ----------gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 157 ----------GLDHLLEMILLVSE 170 (178)
T ss_dssp ----------HHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHhhh
Confidence 99999999887654
No 104
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.88 E-value=2.7e-22 Score=180.99 Aligned_cols=166 Identities=16% Similarity=0.186 Sum_probs=113.7
Q ss_pred CCCCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCC----------ccchh
Q 010254 9 SGPGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSS----------VEDRG 78 (514)
Q Consensus 9 ~~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~----------~~~~~ 78 (514)
........++|+|+|++|||||||+|+|++..+ ......+++|....+...+.++.+|||||+ +.+..
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKI--AFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCC--SCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCcc--ccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHH
Confidence 333445678999999999999999999999883 222334444544433333456889999994 33444
Q ss_pred hHHHhhhcc---CEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccC
Q 010254 79 KLGEELRRA---DAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIE 155 (514)
Q Consensus 79 ~~~~~~~~a---d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
....+++.+ |++++|+|++++.+..... +..++... +.|+++|+||+|+.+........+....+...++. .
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~ 168 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKSL--NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE-Y 168 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC-S
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHHc--CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC-C
Confidence 455566655 9999999998765554443 55666665 79999999999997652222222222333332222 2
Q ss_pred cEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 156 TCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 156 ~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
++++|||++|. |++++++.|.+.+++
T Consensus 169 ~~~~~Sa~~~~------------gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 169 TIIPTSSVTGE------------GISELLDLISTLLKE 194 (195)
T ss_dssp CEEECCTTTCT------------THHHHHHHHHHHHC-
T ss_pred ceEEEecCCCC------------CHHHHHHHHHHHhhc
Confidence 89999999999 999999999887753
No 105
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.88 E-value=2.8e-22 Score=183.98 Aligned_cols=120 Identities=16% Similarity=0.167 Sum_probs=88.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCC-eeEEEEEeCCCCccchh-hHHHhhhccCEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPD-RVPITIIDTPSSVEDRG-KLGEELRRADAVV 91 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~-~~~~~l~Dt~G~~~~~~-~~~~~~~~ad~ii 91 (514)
+..+||+|+|++|||||||+++|++..+...+.+..... ....+... .+.+.+|||||++.+.. ....+++.+|+++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSS-AIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEE-EEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceee-EEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 457999999999999999999999988655544322111 12223322 68899999999998877 6778899999999
Q ss_pred EEEeCCCcc-cHHHHHHHHHHHHHhc---CCCCcEEEEEecccCccc
Q 010254 92 LTYACDRPE-TLDELSTFWLPELRRL---EVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 92 ~v~d~~~~~-s~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~~~ 134 (514)
+|||+++.. ++......|...+... ..++|+++|+||+|+...
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 999998743 3555555566665542 347899999999999865
No 106
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=1.1e-22 Score=181.68 Aligned_cols=156 Identities=14% Similarity=0.144 Sum_probs=113.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
++.++|+|+|++|||||||+|+|+++++ ..+.++.+... ..+..++..+.+|||||.+.+...+..+++.+|++++|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFV 92 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 5689999999999999999999998876 22222222111 22333468999999999998888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc------cCcEEEcCcccc
Q 010254 94 YACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE------IETCIECSALKQ 165 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~Sa~~~ 165 (514)
+|++++.+++.+.. |+..+... ..+.|+++|+||+|+.+.. .. .++.+.++. ..++++|||++|
T Consensus 93 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~----~~i~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (183)
T 1moz_A 93 VDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPGAL---SA----SEVSKELNLVELKDRSWSIVASSAIKG 164 (183)
T ss_dssp EETTCTTTHHHHHH-HHHHHTTSSTTSSCEEEEEEECTTSTTCC---CH----HHHHHHTTTTTCCSSCEEEEEEBGGGT
T ss_pred EECCCHHHHHHHHH-HHHHHHcChhhCCCeEEEEEECCCCCCCC---CH----HHHHHHhCcccccCCceEEEEccCCCC
Confidence 99999999998876 66665543 2579999999999997641 11 112222211 116899999999
Q ss_pred ccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 166 IQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 166 ~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
. |++++.+.|.+.+.
T Consensus 165 ~------------gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 165 E------------GITEGLDWLIDVIK 179 (183)
T ss_dssp B------------THHHHHHHHHHHHH
T ss_pred c------------CHHHHHHHHHHHHH
Confidence 9 99999999887664
No 107
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.88 E-value=1.8e-22 Score=178.54 Aligned_cols=153 Identities=23% Similarity=0.290 Sum_probs=109.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccchhh--------HHH
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRGK--------LGE 82 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~ 82 (514)
+.+++|+|+|++|||||||+|+|++..+ ..+...+++|.. ..+..++.++.+|||||+++.... ...
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREA--AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQ 79 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCC--SCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc--ceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHH
Confidence 3568999999999999999999998873 223334444422 234445677999999999754321 224
Q ss_pred hhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcC
Q 010254 83 ELRRADAVVLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECS 161 (514)
Q Consensus 83 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 161 (514)
+++.+|++++|+|++++.+++.. .|...+.... .++|+++|+||+|+..... .... ... .++++||
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~~~-------~~~--~~~~~~S 146 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVDPA--EIWPEFIARLPAKLPITVVRNKADITGETL--GMSE-------VNG--HALIRLS 146 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCSHH--HHCHHHHHHSCTTCCEEEEEECHHHHCCCC--EEEE-------ETT--EEEEECC
T ss_pred HHHhCCEEEEEEECCCCCCHHHH--HHHHHHHHhcccCCCEEEEEECccCCcchh--hhhh-------ccC--CceEEEe
Confidence 68999999999999998887643 3777766543 4699999999999864310 0000 011 2789999
Q ss_pred ccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 162 ALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 162 a~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
|++|. |+++|++.|.+.+..
T Consensus 147 A~~g~------------gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 147 ARTGE------------GVDVLRNHLKQSMGF 166 (172)
T ss_dssp TTTCT------------THHHHHHHHHHHC--
T ss_pred CCCCC------------CHHHHHHHHHHHhhh
Confidence 99999 999999999887653
No 108
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.88 E-value=4.6e-23 Score=184.53 Aligned_cols=165 Identities=13% Similarity=0.217 Sum_probs=111.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCcccccce-----eCCeeEEEEEeCCCCccchhhHHHhhhccC
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADT--FPANVPPVLPPTRLPEDF-----YPDRVPITIIDTPSSVEDRGKLGEELRRAD 88 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~--~~~~~~~~~~~tt~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad 88 (514)
.+||+|+|++|||||||+|+|++.. +...+.++.+.......+ ....+.+.+|||+|++.+......+++++|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 5899999999999999999999853 222222211111011111 124678999999999988887888899999
Q ss_pred EEEEEEeCCCc-ccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchh--HhhhhHHHHHHHhcc--CcEEEcCcc
Q 010254 89 AVVLTYACDRP-ETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVS--LEQVMMPIMQQFREI--ETCIECSAL 163 (514)
Q Consensus 89 ~ii~v~d~~~~-~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~--~~~i~~Sa~ 163 (514)
++++|||++++ .+++.+.. |+..+....++.|+++|+||+|+.+. +... ..+....+++.++.. .++++|||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~-~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKP-WLFNIKARASSSPVILVGTHLDVSDE-KQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHH-HHHHHHHHCTTCEEEEEEECGGGCCH-HHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHH-HHHHHHhhCCCCcEEEEEECCCcccc-hhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999987 46777765 88888766568999999999999765 2221 011122233223220 038999999
Q ss_pred ccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 164 KQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 164 ~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
++. +++++|.+.|.+.+..
T Consensus 160 ~~~-----------~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 160 EES-----------DALAKLRKTIINESLN 178 (184)
T ss_dssp SCC-----------HHHHHHHHHHHHHHHC
T ss_pred cCc-----------hhHHHHHHHHHHHHhc
Confidence 993 2899999999887765
No 109
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.88 E-value=1.4e-22 Score=182.08 Aligned_cols=157 Identities=18% Similarity=0.163 Sum_probs=117.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
++.+||+|+|++|||||||+|+|+++.+... .++.+... ..+..++..+.+|||||++.+......+++.+|++++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~~~~--~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 96 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVGVNL--ETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV 96 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEE-CSSTTCCE--EEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCc-CCCCceEE--EEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence 4679999999999999999999998876432 22222111 12334578999999999998888888889999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc------cCcEEEcCcccc
Q 010254 94 YACDRPETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE------IETCIECSALKQ 165 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~Sa~~~ 165 (514)
+|++++.+++.... |+..+... ..++|+++|+||+|+.+... . .++.+.++. ..++++|||+++
T Consensus 97 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 168 (189)
T 2x77_A 97 VDSTDRDRMGVAKH-ELYALLDEDELRKSLLLIFANKQDLPDAAS---E----AEIAEQLGVSSIMNRTWTIVKSSSKTG 168 (189)
T ss_dssp EETTCCTTHHHHHH-HHHHHHTCSTTTTCEEEEEEECTTSTTCCC---H----HHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred EeCCCHHHHHHHHH-HHHHHHhhhhcCCCeEEEEEECCCCcCCCC---H----HHHHHHhChhhccCCceEEEEccCCCc
Confidence 99999999998876 55554432 24799999999999976511 1 112222110 016899999999
Q ss_pred ccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 166 IQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 166 ~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
. |++++.+.+.+.+.+
T Consensus 169 ~------------gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 169 D------------GLVEGMDWLVERLRE 184 (189)
T ss_dssp T------------THHHHHHHHHHHHHH
T ss_pred c------------CHHHHHHHHHHHHHh
Confidence 9 999999999887754
No 110
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.88 E-value=3.4e-24 Score=194.48 Aligned_cols=162 Identities=19% Similarity=0.304 Sum_probs=116.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
...+||+|+|++|||||||+|+|++..+.....+...... ....+....+.+.||||||.+.+......+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 4579999999999999999999999876443222111111 22233344578999999999988888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
+|||++++.+++.+.. |+..+.... .+.|+++|+||+|+.+. +....+ ....++..++. ++++|||++|.
T Consensus 111 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ilv~nK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~~vSA~~g~---- 181 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTK-KVVDYT-TAKEFADSLGI--PFLETSAKNAT---- 181 (199)
T ss_dssp ECC-CCCSHHHHHHHH-HHHHHHSCC-CCSEEEEC-CCSSCC---CCCCSC-C-CHHHHTTTC--CBCCCCC---H----
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhccCCCCEEEEEECccCCcc-ccCCHH-HHHHHHHHcCC--eEEEEECCCCC----
Confidence 9999999999999876 888887764 47899999999999765 322222 33456666554 89999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhc
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.+.
T Consensus 182 --------gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 182 --------NVEQSFMTMAAEIK 195 (199)
T ss_dssp --------HHHHHHHHHTTTTT
T ss_pred --------CHHHHHHHHHHHHH
Confidence 99999999887664
No 111
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.88 E-value=6.2e-22 Score=178.81 Aligned_cols=160 Identities=17% Similarity=0.149 Sum_probs=107.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCC----------ccchhhHHH
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSS----------VEDRGKLGE 82 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~~~ 82 (514)
....++|+|+|++|||||||+|+|++..+...+.+ .+++|....+..-+..+.+|||||+ +.+......
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSS-KPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCC-CCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 45679999999999999999999999875444333 3334433222111236999999994 344444566
Q ss_pred hhhcc---CEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc--cCcE
Q 010254 83 ELRRA---DAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--IETC 157 (514)
Q Consensus 83 ~~~~a---d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~ 157 (514)
+++.+ |++++|+|++++.++.... +..++... +.|+++|+||+|+.+. +. .......+.+.+.. ..++
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~--~~p~i~v~nK~Dl~~~-~~--~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKYY--GIPVIVIATKADKIPK-GK--WDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSCG-GG--HHHHHHHHHHHHTCCTTSEE
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEECcccCCh-HH--HHHHHHHHHHHHcccCCCce
Confidence 67766 9999999999888877653 55666554 8999999999999875 21 22222334443432 2389
Q ss_pred EEcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 158 IECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 158 i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
++|||++|. |++++++.|.+.++
T Consensus 172 ~~~Sa~~~~------------gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 172 ILFSSETKK------------GKDEAWGAIKKMIN 194 (195)
T ss_dssp EECCTTTCT------------THHHHHHHHHHHHT
T ss_pred EEEEccCCC------------CHHHHHHHHHHHhc
Confidence 999999999 99999999887654
No 112
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.80 E-value=3.1e-24 Score=195.56 Aligned_cols=162 Identities=22% Similarity=0.375 Sum_probs=121.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-cccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~-tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
++.+||+|+|++|||||||+|+|++..+.....++... ......+....+.+.+|||||++++......+++++|++++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 56799999999999999999999988764443332211 11223344456778899999999988888889999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccccc-----------chhHhhhhHHHHHHHhccCcEEEcC
Q 010254 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ-----------QVSLEQVMMPIMQQFREIETCIECS 161 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~~~~~~i~~S 161 (514)
|||++++.+++.+...|+..+....+++|+++|+||+|+.+... ... .+....+++.++. .++++||
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~-~~~~~vS 185 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPIT-YPQGLAMAKEIGA-VKYLECS 185 (204)
Confidence 99999999999887558888887666899999999999976421 111 1223344444432 2689999
Q ss_pred ccccccceecCCCCChhhHHHHHHHHHH
Q 010254 162 ALKQIQVKCFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 162 a~~~~~~~~f~~~l~~~~i~~L~~~i~~ 189 (514)
|++|. |++++++.|.+
T Consensus 186 A~~g~------------gi~~l~~~l~~ 201 (204)
T 3th5_A 186 ALTQR------------GLKTVFDEAIR 201 (204)
Confidence 99999 78877777654
No 113
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.87 E-value=3.5e-22 Score=194.87 Aligned_cols=159 Identities=15% Similarity=0.146 Sum_probs=116.1
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
..++.+||+|+|++|||||||+|+|+++.+....+ +.. ....+...++.+.||||||.+.+......+++.+|++
T Consensus 161 ~~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~p----T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~v 236 (329)
T 3o47_A 161 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 236 (329)
T ss_dssp --CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEE----ETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEE
T ss_pred cccCcceEEEECCCCccHHHHHHHHhCCCCCCccc----ccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 34567899999999999999999999988633221 111 1223445678999999999999988899999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhcc------CcEEEcCcc
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI------ETCIECSAL 163 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~Sa~ 163 (514)
|+|||++++.++..+...|...+.... +++|++||+||+|+.+.. ....+...++.. .++++|||+
T Consensus 237 ilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~-------~~~~i~~~~~~~~~~~~~~~~~~vSAk 309 (329)
T 3o47_A 237 IFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-------NAAEITDKLGLHSLRHRNWYIQATCAT 309 (329)
T ss_dssp EEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-------CHHHHHHHHTCTTCCSSCEEEEECBTT
T ss_pred EEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc-------CHHHHHHHhchhhhhcCCCEEEEEECC
Confidence 999999999999998875555555432 579999999999998651 112233333221 158999999
Q ss_pred ccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 164 KQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 164 ~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
+|. |+++|++.|.+.+.+
T Consensus 310 ~g~------------gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 310 SGD------------GLYEGLDWLSNQLRN 327 (329)
T ss_dssp TTB------------THHHHHHHHHHHHTC
T ss_pred CCc------------CHHHHHHHHHHHHHh
Confidence 999 999999999887653
No 114
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.87 E-value=6.5e-22 Score=172.66 Aligned_cols=150 Identities=22% Similarity=0.219 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccc-------hhhHHHhhhc
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVED-------RGKLGEELRR 86 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~ 86 (514)
.||+++|++|||||||+|+|.+..+. .....++++.. ..+...+..+.+|||||.... ......+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSA--VVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-------------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCee--eccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999998742 22223333322 233345678999999998762 3345567899
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccc
Q 010254 87 ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (514)
Q Consensus 87 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~ 166 (514)
+|++++|+|++++.+... ..+...++.. +.|+++|+||+|+.+. ++....++ .++ ..++++|||++|.
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~~--~~p~ilv~nK~Dl~~~------~~~~~~~~-~~~-~~~~~~~Sa~~~~ 147 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRRK--GKPVILVATKVDDPKH------ELYLGPLY-GLG-FGDPIPTSSEHAR 147 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHHH--TCCEEEEEECCCSGGG------GGGCGGGG-GGS-SCSCEECBTTTTB
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHhc--CCCEEEEEECcccccc------hHhHHHHH-hCC-CCCeEEEecccCC
Confidence 999999999988655433 2255556554 7999999999999765 12223333 333 2378999999999
Q ss_pred cceecCCCCChhhHHHHHHHHHHHhc
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++.+.+.+.+|
T Consensus 148 ------------gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 148 ------------GLEELLEAIWERLP 161 (161)
T ss_dssp ------------SHHHHHHHHHHHCC
T ss_pred ------------ChHHHHHHHHHhCc
Confidence 99999999987664
No 115
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.87 E-value=6.2e-22 Score=179.79 Aligned_cols=144 Identities=15% Similarity=0.267 Sum_probs=114.2
Q ss_pred ccCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccC
Q 010254 365 AERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAAC 444 (514)
Q Consensus 365 ~~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~ 444 (514)
.....+||+++|++|||||||+++|++..+...+.++.+.++....+.+++....+.+|||+|++.+..++ ..+++.+
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~ 102 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTIT--QSYYRSA 102 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHH--HHHHTTC
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHH--HHHHhhC
Confidence 34567999999999999999999999999887777787878877888877444677799999999888776 5788999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCC-ccc
Q 010254 445 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVM-VLY 513 (514)
Q Consensus 445 d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~ 513 (514)
|++|+|||++++.+|+.+..|+..+..... .+.|++||+||+|+...+ +..++++++++.+++ +|+
T Consensus 103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 170 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVPHWIEDVRKYAG---SNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAI 170 (201)
T ss_dssp SEEEEEEETTBHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEE
Confidence 999999999999999999999998877542 279999999999998754 567788999999988 654
No 116
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.2e-21 Score=177.80 Aligned_cols=142 Identities=18% Similarity=0.240 Sum_probs=121.7
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|++|||||||+++|++..+...+.++.+.++....+.+++....+.+|||+|.+.+..+. ..+++.+|+
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~d~ 101 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSIT--QSYYRSANA 101 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH--GGGSTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHHhcCCE
Confidence 456899999999999999999999999888887888888888888887444567799999999988776 678899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||++++.+|+.+..|+..+..... .+.|+++|+||+|+...+ +..++++++++..+++|+
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 166 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQYAS---NKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYL 166 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999998877542 269999999999997654 567788889998888765
No 117
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.87 E-value=1.1e-21 Score=189.57 Aligned_cols=161 Identities=12% Similarity=0.155 Sum_probs=117.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccccee----CCeeEEEEEeCCCCccc-----hhhHHHhhh
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFY----PDRVPITIIDTPSSVED-----RGKLGEELR 85 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~----~~~~~~~l~Dt~G~~~~-----~~~~~~~~~ 85 (514)
.++||+++|++|||||||+|+|+++. ....+..+++|+...+. .+++.+.+|||||++.+ ......+++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~--~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY--SAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC--CTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC--CCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 47899999999999999999999874 22222234444333222 24789999999999887 566778899
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHH---HHHhcCCCCcEEEEEecccCcccc-cch---hHhhhhHHHHHHHhc-cCcE
Q 010254 86 RADAVVLTYACDRPETLDELSTFWLP---ELRRLEVKVPVIVVGCKLDLRDEN-QQV---SLEQVMMPIMQQFRE-IETC 157 (514)
Q Consensus 86 ~ad~ii~v~d~~~~~s~~~~~~~~~~---~l~~~~~~~pvilv~NK~Dl~~~~-~~~---~~~~~~~~~~~~~~~-~~~~ 157 (514)
++|++|+|||++++.+++++.. |.. .+....+++|+++|+||+|+.... +.. ...+....+++.++. ..++
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~~-~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIEI-FAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHHH-HHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred cCCEEEEEEECCChhhHHHHHH-HHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 9999999999999999998864 544 444445689999999999998732 220 222345666766652 1389
Q ss_pred EEcCccccccceecCCCCChhhHHHHHHHHHHHh
Q 010254 158 IECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 158 i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
++|||++ . ++.+++..+...+
T Consensus 159 ~~tSa~~-~------------~i~e~~~~iv~~l 179 (307)
T 3r7w_A 159 FPTSIWD-E------------SLYKAWSQIVCSL 179 (307)
T ss_dssp EECCTTS-S------------HHHHHHHHHHHTT
T ss_pred EEeeecC-C------------hHHHHHHHHHHHH
Confidence 9999999 5 6666666655543
No 118
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.87 E-value=2.2e-21 Score=174.33 Aligned_cols=143 Identities=20% Similarity=0.274 Sum_probs=121.5
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHH-hhhcCccccccCc
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA-KLLSNKDSLAACD 445 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~-~~~~~~~~~~~~d 445 (514)
...+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++....+.+|||+|.+.+. .+. ..+++.+|
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--~~~~~~~d 95 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMV--QHYYRNVH 95 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTH--HHHHTTCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhh--HHHhcCCC
Confidence 456999999999999999999999999988888888888888888887445677799999999887 555 56789999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++++|||++++.||+.+..|+..+...... .+.|+++|+||+|+...+ +..++++++++.++++|+
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 162 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLA--NDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLF 162 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCC--SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999888775422 279999999999997654 567788999999988765
No 119
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.87 E-value=1.7e-21 Score=173.44 Aligned_cols=141 Identities=19% Similarity=0.275 Sum_probs=119.3
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|++|||||||+++|++..+...+.++.+.++....+...+....+.+|||+|.+.+.... ..+++.+|+
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~ 84 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTIT--STYYRGTHG 84 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCC--GGGGTTCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhH--HHHhccCCE
Confidence 456899999999999999999999999988887888888888888887444667799999998887665 678899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||++++.+++.+..|+..+.... ++.|+++|+||+|+...+ +...+..++++.++++++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC----DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLF 148 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC----TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEE
Confidence 999999999999999999999987754 269999999999998765 566788899999988775
No 120
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.87 E-value=2.1e-21 Score=171.02 Aligned_cols=142 Identities=19% Similarity=0.215 Sum_probs=115.3
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|++|||||||+++|++..+...+.++.+.++....+...+......+|||+|.+.+.... ...++.+|+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~ 81 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALG--PIYYRDSNG 81 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC---------CCSSTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhH--HHHhccCCE
Confidence 346899999999999999999999999887777888888887888887555567799999999888766 578899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+ +..+++++++++++++++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 146 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKMLG---NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHY 146 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHG---GGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999888766432 269999999999998754 567788999999988765
No 121
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.87 E-value=1.6e-21 Score=175.21 Aligned_cols=143 Identities=15% Similarity=0.239 Sum_probs=121.6
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCc
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 445 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d 445 (514)
.+..+||+++|++|||||||+++|++..+...+.++.+.++....+...+....+.+|||+|.+.+.... ..+++.+|
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d 96 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTIT--TAYYRGAM 96 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSG--GGGGTTCS
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhH--HHhccCCC
Confidence 4557999999999999999999999999888877888888887777777455677799999998887665 67889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+ +..+++++++++++++++
T Consensus 97 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2gf9_A 97 GFLLMYDIANQESFAAVQDWATQIKTYSW---DNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFF 162 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEE
Confidence 99999999999999999999988877642 269999999999998754 556788999999988765
No 122
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.87 E-value=1.5e-21 Score=179.07 Aligned_cols=140 Identities=14% Similarity=0.199 Sum_probs=116.9
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+||+++|++|||||||+++|+++.+...+.++.+..+. ..+.+.+....+.+|||+|++.+..++ ..+++++|+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~ 101 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPYYDNVR--PLCYSDSDA 101 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSGGGTTTG--GGGCTTCSE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCHhHHHHH--HHHcCCCeE
Confidence 45689999999999999999999999998888777776654 556666455677899999999988776 678899999
Q ss_pred EEEEEeCCChhhHHH-HHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC-c
Q 010254 447 AVFVHDSSDESSWKR-ATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-V 511 (514)
Q Consensus 447 vilv~D~~~~~s~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~-~ 511 (514)
+|+|||++++.||+. +..|+..+.... ++.|+++|+||+|+..+ .+..+++.++++++++ +
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 177 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYC----PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEI 177 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHC----TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCE
Confidence 999999999999999 689999888764 27999999999999762 3667889999999998 6
Q ss_pred cc
Q 010254 512 LY 513 (514)
Q Consensus 512 ~~ 513 (514)
|+
T Consensus 178 ~~ 179 (214)
T 3q3j_B 178 YL 179 (214)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 123
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=177.12 Aligned_cols=144 Identities=18% Similarity=0.241 Sum_probs=113.9
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHh-hhcCccccccC
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK-LLSNKDSLAAC 444 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~-~~~~~~~~~~~ 444 (514)
.+..+||+++|++|||||||+++|++..+...+.++.+.++....+.+++......+|||+|++.+.. +. ..+++.+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~--~~~~~~~ 97 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLR--DHCLQTG 97 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHH--HHHHHHC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhH--HHhhccC
Confidence 34569999999999999999999987655444445666666667777774445667999999877654 33 4567899
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 445 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 445 d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
|++++|||++++.||+.+..|+..+...... .+.|+++|+||+|+...+ +..++++++++.++++|+
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~ 165 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPH--HDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHI 165 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTT--SCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEE
Confidence 9999999999999999999999988765421 269999999999998654 567788999999988775
No 124
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.87 E-value=1.3e-21 Score=172.33 Aligned_cols=141 Identities=18% Similarity=0.273 Sum_probs=114.9
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|++..+...+.++.+.++....+..++....+.+|||+|.+.+...+ ...++.+|++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~~ 79 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT--TAYYRGAMGI 79 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCC--HHHHTTEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhH--HHHhccCCEE
Confidence 35899999999999999999999999887777888888888888888555677899999998887655 5778999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
++|||++++.+++.+..|+..+..... ++.|+++|+||+|+....+..+++.+++++++++++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 142 (170)
T 1g16_A 80 ILVYDITDERTFTNIKQWFKTVNEHAN---DEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFI 142 (170)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEE
Confidence 999999999999999999988877642 269999999999996544667788899999988765
No 125
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.87 E-value=1.9e-21 Score=180.20 Aligned_cols=163 Identities=14% Similarity=0.142 Sum_probs=110.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccc---eeCCeeEEEEEeCCCCcc------c---hhhHH
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPED---FYPDRVPITIIDTPSSVE------D---RGKLG 81 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~---~~~~~~~~~l~Dt~G~~~------~---~~~~~ 81 (514)
...++|+|+|++|||||||+|+|++..+.. ...+.+|.... +...+..+.||||||+.. . .....
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDV---QSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTIT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEE---ECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcc---CCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHH
Confidence 467999999999999999999999987531 22334443322 233468899999999932 1 11233
Q ss_pred HhhhccCEEEEEEeCCCcccHHHH-HHHHHHHHHhcCCCCcEEEEEecccCcccccchhHh--hhhHHHHHHHhccCcEE
Q 010254 82 EELRRADAVVLTYACDRPETLDEL-STFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLE--QVMMPIMQQFREIETCI 158 (514)
Q Consensus 82 ~~~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~i 158 (514)
.++..+|++|+|||++++.++... ...|+..+....+++|+++|+||+|+... +....+ +....+....+...+++
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM-DSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC---CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc-hhhHHHHHHHHHHHHHhcCCCceEE
Confidence 457889999999999998776522 12366666665458999999999999765 222211 22334444432112799
Q ss_pred EcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 159 ECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 159 ~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
+|||++|. |++++++.|.+.+.
T Consensus 183 ~~SA~~g~------------gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 183 SFSTLTGV------------GVEQAKITACELLK 204 (228)
T ss_dssp ECCTTTCT------------THHHHHHHHHHHHH
T ss_pred EEecccCC------------CHHHHHHHHHHHHH
Confidence 99999999 99999999887664
No 126
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.87 E-value=4.2e-21 Score=174.52 Aligned_cols=142 Identities=13% Similarity=0.233 Sum_probs=121.8
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|++|||||||+++|++..+...+.++.+.++....+...+....+.+|||+|.+.+..++ ..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ 83 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTIT--TAYYRGAMG 83 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH--HTTGGGCSE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchH--HHhhcCCCE
Confidence 356899999999999999999999999888887888888887777777455677799999999888776 578899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+|+|||++++.+|+.+..|+..+..... .+.|+++|+||+|+...+ +...+++++++.+++++|
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSW---DNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFF 148 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSC---SSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEE
Confidence 9999999999999999999988877542 269999999999997754 567788899999988765
No 127
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.87 E-value=2.1e-21 Score=170.90 Aligned_cols=141 Identities=18% Similarity=0.203 Sum_probs=120.4
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|+++.+...+.++.+.++....+...+....+.+|||+|++.+.... ...++.+|++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--~~~~~~~d~~ 82 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA--PMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH--HHHHTTCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhh--HHhccCCCEE
Confidence 45899999999999999999999999888887888888877778777456677799999998887766 5778999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++|||++++.+++.+..|+..+..... +++|+++|+||+|+..++ +..+++.+++++++++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 146 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQAS---PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFM 146 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSC---TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEE
Confidence 999999999999999999988877642 279999999999997654 556788889999888765
No 128
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.86 E-value=1.3e-21 Score=180.70 Aligned_cols=166 Identities=16% Similarity=0.111 Sum_probs=114.0
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---cee-CCeeEEEEEeCCCCccc----------h
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFY-PDRVPITIIDTPSSVED----------R 77 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~-~~~~~~~l~Dt~G~~~~----------~ 77 (514)
.....++|+|+|.+|||||||+|+|++..... .....+++|... .+. .++..+.||||||+... .
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLA-FASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSS-CTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcce-eecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 34567999999999999999999999987322 233344445332 222 44688999999997432 3
Q ss_pred hhHHHhhhc---cCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHH---
Q 010254 78 GKLGEELRR---ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF--- 151 (514)
Q Consensus 78 ~~~~~~~~~---ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--- 151 (514)
.....+++. +|++++|+|++++.+... ..|+..++.. ++|+++|+||+|+..........+........+
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAPT--GKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGGG--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 344556655 888999999987655333 3477888775 899999999999986521111111222222222
Q ss_pred --hccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 152 --REIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 152 --~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
....++++|||++|. |+++|++.|.+.++..
T Consensus 180 ~~~~~~~~~~~SA~~g~------------gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRT------------GLDDAHALIESWLRPA 212 (223)
T ss_dssp TCCSCEEEEEEBTTTTB------------SHHHHHHHHHHHHC--
T ss_pred ccCCCCeEEEeecCCCc------------CHHHHHHHHHHhcCcc
Confidence 122379999999999 9999999999988754
No 129
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.86 E-value=7e-22 Score=176.52 Aligned_cols=142 Identities=13% Similarity=0.225 Sum_probs=95.2
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|++|||||||+++|++..+...+.++.+.++....+.+++....+.+|||+|++.+..++ ..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ 83 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--TAYYRGAMG 83 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------C--CTTTTTCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhH--HHHHhcCCE
Confidence 456899999999999999999999988876666777777777777777444667799999999888766 678899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||++++.+|+.+..|+..+..... ++.|+++|+||+|+...+ +..+++++++++++++++
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 148 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRNWIRNIEEHAS---ADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFM 148 (183)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSC---TTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999998877532 269999999999998754 567788999999998775
No 130
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.86 E-value=1e-21 Score=192.90 Aligned_cols=165 Identities=22% Similarity=0.360 Sum_probs=126.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVL 92 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~ 92 (514)
...++|+|+|++|||||||+|+|++..+...+.++..... ....+....+.+.+|||||++.+......+++.+|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 4569999999999999999999998886544433221111 122333445677799999999988888889999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc-----------cchhHhhhhHHHHHHHhccCcEEEcC
Q 010254 93 TYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-----------QQVSLEQVMMPIMQQFREIETCIECS 161 (514)
Q Consensus 93 v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~~S 161 (514)
|||++++.+++.+...|+..+....+++|+++|+||+|+.... +.... +....+++.++. .++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~-~~~~~~S 310 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY-PQGLAMAKEIGA-VKYLECS 310 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCH-HHHHHHHHHTTC-SEEEECC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccH-HHHHHHHHHcCC-cEEEEec
Confidence 9999999999998766999888876789999999999997541 11222 233455555542 2799999
Q ss_pred ccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 162 ALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 162 a~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++|. |++++++.|.+.+.
T Consensus 311 a~~~~------------gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 311 ALTQR------------GLKTVFDEAIRAVL 329 (332)
T ss_dssp TTTCT------------THHHHHHHHHHHHH
T ss_pred CCCCc------------CHHHHHHHHHHHHh
Confidence 99999 99999999887653
No 131
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=176.81 Aligned_cols=145 Identities=16% Similarity=0.206 Sum_probs=115.2
Q ss_pred cccCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCcccccc
Q 010254 364 QAERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAA 443 (514)
Q Consensus 364 ~~~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~ 443 (514)
+.....+||+++|++|||||||+++|++..+...+.++.+..+ ...+...+....+.+|||+|.+.+..+. ..+++.
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~ 95 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILP--YSFIIG 95 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCC--GGGTTT
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHH--HHHHhc
Confidence 3445679999999999999999999999999888877777655 4566666456677899999998887665 678899
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 444 CDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 444 ~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+|++++|||++++.+|+.+..|+..+...... .++|+++|+||+|+...+ +...++.++++.++++|+
T Consensus 96 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 164 (201)
T 3oes_A 96 VHGYVLVYSVTSLHSFQVIESLYQKLHEGHGK--TRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFM 164 (201)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHC-------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEE
Confidence 99999999999999999999999998765332 268999999999998655 567888999999998876
No 132
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.86 E-value=2.4e-21 Score=175.00 Aligned_cols=142 Identities=20% Similarity=0.323 Sum_probs=122.9
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|++|||||||+++|++..+...+.++.+.++....+..++....+.+|||+|++.+..+. ..+++.+|+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~ 91 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT--SSYYRGAHG 91 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTH--HHHHTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhH--HHHHhhCCE
Confidence 456899999999999999999999999988888888888888888887444567799999998887766 578899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||++++.+|+.+..|+..+...... +.|+++|+||+|+...+ +...+++++++.++++|+
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 156 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFL 156 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT---TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECcccccccccCHHHHHHHHHHcCCcEE
Confidence 99999999999999999999988776532 69999999999998755 566788999999998875
No 133
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.86 E-value=1.8e-21 Score=175.26 Aligned_cols=143 Identities=16% Similarity=0.239 Sum_probs=118.1
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCc
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 445 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d 445 (514)
....+||+++|++|||||||+++|++..+...+.++.+.++....+..++....+.+|||+|++.+..+. ..+++.+|
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d 95 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSIT--RSYYRGAA 95 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCC--HHHHTTCS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhH--HHHhccCC
Confidence 3456899999999999999999999999988887888888888888887445667799999998887655 57889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+ +..+++++++++++++++
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 161 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSS---SNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFM 161 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999988877542 279999999999997654 567788999999988765
No 134
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.86 E-value=2.3e-21 Score=170.67 Aligned_cols=142 Identities=18% Similarity=0.225 Sum_probs=105.0
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.+||+++|++|||||||+++|++..+...+.++.+.+.....+..++......+|||+|++.+..... ...++.+|+++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-~~~~~~~d~~i 80 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQ-DHCLQTGDAFL 80 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC---------CHHHHHCSEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhh-hhhhccCCEEE
Confidence 58999999999999999999998888777767777777777787774455677999999988875332 45678899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+|||++++++|+.+..|+..+...... .++|+++|+||+|+...+ +..+++.++++.++++|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (169)
T 3q85_A 81 IVFSVTDRRSFSKVPETLLRLRAGRPH--HDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHI 144 (169)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTT--SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEECCChHHHHHHHHHHHHHHhcccC--CCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEE
Confidence 999999999999999999998776432 269999999999998654 677889999999998875
No 135
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.86 E-value=4.2e-21 Score=171.03 Aligned_cols=142 Identities=18% Similarity=0.190 Sum_probs=121.9
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+||+++|++|||||||+++|++..+...+.++.+.++....+.+.+....+.+|||+|++.+...+ ...++.+|+
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~ 87 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA--PMYYRGAAA 87 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGT--HHHHTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhh--HHHhccCCE
Confidence 446899999999999999999999999988887888888888888877455677799999998887765 578899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||++++.+|+.+..|+..+..... ++.|+++|+||+|+...+ +..++++++++.++++++
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGN---PNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFM 152 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSC---TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999998877642 279999999999997654 567788999999988765
No 136
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.86 E-value=2e-21 Score=173.18 Aligned_cols=141 Identities=13% Similarity=0.222 Sum_probs=115.9
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|+++.+...+.++.+..+ ...+..++....+.+|||+|.+.+..+. ..+++.+|++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~~~~ 81 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFP--QTYSIDINGY 81 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCC--GGGTTTCSEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHH--HHHHhcCCEE
Confidence 468999999999999999999998888877777777666 5666666344556799999998886555 5788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++|||++++.+|+.+..|+..+...... .++|+++|+||+|+...+ +..++++++++.++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 146 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGK--VQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFL 146 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEE
Confidence 9999999999999999999888665432 269999999999997655 667889999999998875
No 137
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=6.4e-22 Score=178.18 Aligned_cols=142 Identities=13% Similarity=0.226 Sum_probs=124.2
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|++|||||||+++|++..+...+.++.+.++....+...+....+.+|||+|.+.+..+. ..+++.+|+
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~ 98 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTIT--TAYYRGAMG 98 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHH--HHHHTTCCE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHH--HHHHccCCE
Confidence 456999999999999999999999999888877888888888888887667788899999999888776 678899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||++++.+|+.+..|+..+..... .+.|+++|+||+|+...+ +...+++++++.+++++|
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 163 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQDWATQIKTYSW---DNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFF 163 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999999877542 279999999999997765 567788999999998875
No 138
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.86 E-value=3e-21 Score=172.87 Aligned_cols=142 Identities=18% Similarity=0.298 Sum_probs=121.0
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|++|||||||+++|++..+...+.++.+.++....+..++....+.+|||+|.+.+...+ ..+++.+|+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ 85 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVT--RSYYRGAAG 85 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH--HTTSTTCSE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHH--HHHHhcCCE
Confidence 456899999999999999999999999988887888877877888777444567799999999888776 578899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+ +...++.++++.++++++
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLAS---QNIVIILCGNKKDLDADREVTFLEASRFAQENELMFL 150 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999988776542 279999999999997654 566788899999988775
No 139
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.86 E-value=2e-21 Score=174.35 Aligned_cols=156 Identities=14% Similarity=0.162 Sum_probs=115.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc---cccceeCCeeEEEEEeCCCCccch------hhHHHh
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR---LPEDFYPDRVPITIIDTPSSVEDR------GKLGEE 83 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt---~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~ 83 (514)
.+..++|+|+|++|||||||+|+|++..+... ..++++ ....+..++..+.+|||||++.+. .....+
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIG---NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDY 80 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEE---ECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccc---CCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHH
Confidence 45789999999999999999999998763222 223333 223344557899999999998764 234455
Q ss_pred hh--ccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcC
Q 010254 84 LR--RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECS 161 (514)
Q Consensus 84 ~~--~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 161 (514)
+. .+|++++|+|.++ ++.... |...+... +.|+++|+||+|+... +... +....+++.++. ++++||
T Consensus 81 ~~~~~~~~~i~v~d~~~---~~~~~~-~~~~~~~~--~~piilv~nK~Dl~~~-~~~~--~~~~~~~~~~~~--~~~~~S 149 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATA---LERNLY-LTLQLMEM--GANLLLALNKMDLAKS-LGIE--IDVDKLEKILGV--KVVPLS 149 (188)
T ss_dssp HHHHCCSEEEEEEEGGG---HHHHHH-HHHHHHTT--TCCEEEEEECHHHHHH-TTCC--CCHHHHHHHHTS--CEEECB
T ss_pred HhccCCCEEEEEecchh---HHHHHH-HHHHHHhc--CCCEEEEEEhhhcccc-ccch--HHHHHHHHHhCC--CeEEEE
Confidence 54 5999999999764 444443 77777764 8999999999998654 2221 244567777664 899999
Q ss_pred ccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 162 ALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 162 a~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
|+++. |++++.+.+.+.+...
T Consensus 150 a~~~~------------~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 150 AAKKM------------GIEELKKAISIAVKDK 170 (188)
T ss_dssp GGGTB------------SHHHHHHHHHHHHTTC
T ss_pred ecCCC------------CHHHHHHHHHHHHHhc
Confidence 99999 9999999999887654
No 140
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=3.3e-21 Score=173.68 Aligned_cols=142 Identities=18% Similarity=0.240 Sum_probs=122.0
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|++|||||||+++|++..+...+.++.+.++....+...+....+.+|||+|.+.+.... ...++.+|+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~ 98 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLA--PMYYRGSAA 98 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGT--HHHHTTCSE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhh--HHhhccCCE
Confidence 446899999999999999999999999887777888888888888887566678899999998888766 578899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||++++.+++.+..|+..+..... .++|+++|+||+|+...+ +..+++++++++++++++
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~~---~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 163 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHGP---ENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVV 163 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHSC---TTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCC---CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999998877642 269999999999997644 567789999999888765
No 141
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.86 E-value=4.1e-21 Score=170.67 Aligned_cols=142 Identities=15% Similarity=0.276 Sum_probs=121.1
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|++|||||||+++|++..+...+.++.+.++....+...+....+.+|||+|.+.+...+ ..+++.+|+
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ 90 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT--RSYYRGAAG 90 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHH--HHHHHTCSE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhH--HHHhccCCE
Confidence 456899999999999999999999999887777888888888888777445567799999998887766 578899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+ +..+++++++++++++++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 155 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTN---PNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFL 155 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999988876542 279999999999997654 567788999999988765
No 142
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.86 E-value=1.1e-21 Score=186.58 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=115.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccc---ccceeCCeeEEEEEeCCCCccchh----------hH
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRL---PEDFYPDRVPITIIDTPSSVEDRG----------KL 80 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~---~~~~~~~~~~~~l~Dt~G~~~~~~----------~~ 80 (514)
|+.++|+++|++|||||||+|+|++..+ .++..+++|. ...+...+.++.+|||||+..+.. ..
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~---~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~ 77 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQ---RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIA 77 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCE---EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCc---ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHH
Confidence 3579999999999999999999999873 2333455553 334555678899999999987652 12
Q ss_pred HHh--hhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEE
Q 010254 81 GEE--LRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCI 158 (514)
Q Consensus 81 ~~~--~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (514)
..+ ...+|++++|+|+++.+. .. +|...+... ++|+++|+||+|+... +. .......+.+.++. +++
T Consensus 78 ~~~~~~~~~d~ii~VvD~~~~~~---~~-~~~~~l~~~--~~p~ivv~NK~Dl~~~-~~--~~~~~~~l~~~lg~--~~i 146 (274)
T 3i8s_A 78 CHYILSGDADLLINVVDASNLER---NL-YLTLQLLEL--GIPCIVALNMLDIAEK-QN--IRIEIDALSARLGC--PVI 146 (274)
T ss_dssp HHHHHHTCCSEEEEEEEGGGHHH---HH-HHHHHHHHH--TCCEEEEEECHHHHHH-TT--EEECHHHHHHHHTS--CEE
T ss_pred HHHHhhcCCCEEEEEecCCChHH---HH-HHHHHHHhc--CCCEEEEEECccchhh-hh--HHHHHHHHHHhcCC--CEE
Confidence 223 379999999999887433 22 366666666 8999999999998754 11 12234567777765 899
Q ss_pred EcCccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 159 ECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 159 ~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
++||++|. |+++|++.|.+.++..
T Consensus 147 ~~SA~~g~------------gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 147 PLVSTRGR------------GIEALKLAIDRYKANE 170 (274)
T ss_dssp ECCCGGGH------------HHHHHHHHHHTCCCCC
T ss_pred EEEcCCCC------------CHHHHHHHHHHHHhcC
Confidence 99999999 9999999999887654
No 143
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.86 E-value=4.3e-21 Score=174.89 Aligned_cols=142 Identities=20% Similarity=0.282 Sum_probs=122.1
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++....+.+|||+|.+.+..++ ..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ 83 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT--SSYYRGSHG 83 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCC--GGGGTTCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHH--HHhccCCCE
Confidence 346899999999999999999999999988888888888888888887444577799999998887665 678899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||++++.+|+.+..|+..+..... .+.|+++|+||+|+...+ +..+++.++++.++++++
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYAT---STVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFL 148 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSC---TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999988877542 269999999999998754 567788889999888765
No 144
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.86 E-value=2.6e-21 Score=172.82 Aligned_cols=142 Identities=19% Similarity=0.262 Sum_probs=117.7
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+||+++|++|||||||+++|++..+...+.++.+..+ ...+..++....+.+|||+|++.+..+. ..+++.+|+
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~ 92 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMR--EQYMRTGDG 92 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSH--HHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHH--HHHHhcCCE
Confidence 4569999999999999999999999988888877777666 5666666344455689999998887666 577899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||++++.+|+.+..|+..+...... .++|+++|+||+|+...+ +..+++++++++++++|+
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 158 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDR--ESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYI 158 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTS--SCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEE
Confidence 99999999999999999999887654222 279999999999997754 677889999999998876
No 145
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.86 E-value=2.8e-21 Score=169.79 Aligned_cols=140 Identities=16% Similarity=0.234 Sum_probs=120.0
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|++..+...+.++.+.++....+..++....+.+|||+|++.+..+. ..+++.+|++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~~ 81 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT--KAYYRGAQAC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCC--HHHHTTCCEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHH--HHHhcCCCEE
Confidence 46899999999999999999999999888887888888888888877445677799999998887655 5788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++|||++++.+++.+..|+..+.... ++.|+++|+||+|+...+ +..+++++++++++++++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEV----GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFY 144 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH----CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEE
Confidence 99999999999999999998877654 269999999999998754 557788899999988765
No 146
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.86 E-value=1.6e-21 Score=183.44 Aligned_cols=153 Identities=18% Similarity=0.170 Sum_probs=115.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccchh------hHHHhh
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRG------KLGEEL 84 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~ 84 (514)
++.++|+++|+||||||||+|+|++.++. +...+++|+. ..+...+..+.+|||||+..+.. ....++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~---~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~ 79 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQY---VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYL 79 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEE---EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCc---ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence 46799999999999999999999998743 2233455532 34445578999999999986653 234455
Q ss_pred --hccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCc
Q 010254 85 --RRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSA 162 (514)
Q Consensus 85 --~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 162 (514)
..+|++++|+|+++..+. . +|...+... ++|+++|+||+|+... +... .....+.+.++. ++++|||
T Consensus 80 ~~~~~d~ii~V~D~t~~~~~---~-~~~~~l~~~--~~pvilv~NK~Dl~~~-~~i~--~~~~~l~~~lg~--~vi~~SA 148 (258)
T 3a1s_A 80 LKGDADLVILVADSVNPEQS---L-YLLLEILEM--EKKVILAMTAIDEAKK-TGMK--IDRYELQKHLGI--PVVFTSS 148 (258)
T ss_dssp HHSCCSEEEEEEETTSCHHH---H-HHHHHHHTT--TCCEEEEEECHHHHHH-TTCC--BCHHHHHHHHCS--CEEECCT
T ss_pred hhcCCCEEEEEeCCCchhhH---H-HHHHHHHhc--CCCEEEEEECcCCCCc-cchH--HHHHHHHHHcCC--CEEEEEe
Confidence 589999999999875432 2 266777666 8999999999998654 2222 234667777765 8999999
Q ss_pred cccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 163 LKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 163 ~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
++|. |+++|++.+.+.+.
T Consensus 149 ~~g~------------gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 149 VTGE------------GLEELKEKIVEYAQ 166 (258)
T ss_dssp TTCT------------THHHHHHHHHHHHH
T ss_pred eCCc------------CHHHHHHHHHHHhh
Confidence 9999 99999999988765
No 147
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=1e-20 Score=172.26 Aligned_cols=142 Identities=17% Similarity=0.257 Sum_probs=109.5
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCC--CCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhH-HHhhhcCcccccc
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPF--SDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA-VAKLLSNKDSLAA 443 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~-~~~~~~~~~~~~~ 443 (514)
...+||+++|++|||||||+++|++... ...+ ++.+.++..+.+.+++....+.+|||+|.+. +..+. ..+++.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~--~~~~~~ 111 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLH--DHCMQV 111 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHH--HCCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHH--HHHHhh
Confidence 4568999999999999999999997654 3333 4566667667777773444567899999876 44343 567889
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 444 CDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 444 ~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+|++|+|||++++.||+.+..|+..+...... +++|++||+||+|+...+ +...+++.+++.++++|+
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~--~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~ 180 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQT--EDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFI 180 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGG--TTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEE
Confidence 99999999999999999999998887654211 269999999999997654 566778889999888775
No 148
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.86 E-value=6.8e-21 Score=167.68 Aligned_cols=141 Identities=17% Similarity=0.231 Sum_probs=120.0
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|++..+...+.++.+.++....+...+....+.+|||+|.+.+.... ...++.+|++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~--~~~~~~~~~~ 82 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALA--PMYYRGSAAA 82 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGT--HHHHTTCSEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhccc--HhhCcCCCEE
Confidence 35899999999999999999999999887777888887877777777455677799999998887665 5778999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++|||++++.+++.+..|+..+..... ++.|+++|+||+|+...+ +..++..++++.++++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 146 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGP---PSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFV 146 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSC---TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCC---CCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEE
Confidence 999999999999999999988877542 379999999999998754 557788889999888765
No 149
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.86 E-value=3e-21 Score=173.15 Aligned_cols=143 Identities=16% Similarity=0.242 Sum_probs=112.1
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+||+++|++|||||||+++|+++.+...+.++.+..+. ..+.+.+....+.+|||+|++.+..+ ..+++.+|+
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~---~~~~~~~~~ 94 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLDTPRNC---ERYLNWAHA 94 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CCCT---HHHHTTCSE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEECCEEEEEEEEECCCCCcchhH---HHHHhhCCE
Confidence 45699999999999999999999999988777777765553 44555534556679999999887653 357889999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||++++.+|+.+..|+..+.........+.|+++|+||+|+...+ +..+++.+++++++++||
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 162 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFF 162 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEE
Confidence 9999999999999999999988776521000269999999999997654 667889999999998875
No 150
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=4.9e-21 Score=168.52 Aligned_cols=140 Identities=18% Similarity=0.225 Sum_probs=118.7
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.+||+++|++|||||||+++|++..+...+.++.+.++....+.+++....+.+|||+|++.+...+ ..+++.+|+++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--~~~~~~~d~~i 80 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLA--PXYYRNAQAAL 80 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH--HHHHTTCSEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhh--hhhhccCcEEE
Confidence 4899999999999999999999999887777888887877777777445567799999998887766 57789999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc----ccchhhHHHHHHHcCCccc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF----AMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~ 513 (514)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+... .+..++.+++++.++++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~ 146 (170)
T 1ek0_A 81 VVYDVTKPQSFIKARHWVKELHEQAS---KDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFF 146 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSC---TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEecCChHHHHHHHHHHHHHHHhcC---CCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEE
Confidence 99999999999999999988877642 27999999999999764 2556778889998888765
No 151
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.86 E-value=2.6e-21 Score=175.56 Aligned_cols=142 Identities=18% Similarity=0.298 Sum_probs=111.3
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|++|||||||+++|++..+...+.++.+.++....+.+++....+.+|||+|.+.+..++ ..+++.+|+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~d~ 100 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVT--RSYYRGAAG 100 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCC--HHHHTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHH--HHHhccCCE
Confidence 456999999999999999999999999988887888888888888887445677799999998887665 578899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+|+|||++++.+++.+..|+..+..... ++.|+++|+||+|+...+ +...++.++++.++++|+
T Consensus 101 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 165 (200)
T 2o52_A 101 ALLVYDITSRETYNSLAAWLTDARTLAS---PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFL 165 (200)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTC---TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999988876542 279999999999997654 566788899999988775
No 152
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.86 E-value=7.5e-21 Score=168.31 Aligned_cols=141 Identities=18% Similarity=0.254 Sum_probs=104.7
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHH--HhhhcCccccccCc
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV--AKLLSNKDSLAACD 445 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~--~~~~~~~~~~~~~d 445 (514)
..+||+++|++|||||||+++|++..+...+ ++.+.++....+.+++....+.+|||+|.+.+ ..+. ..+++.+|
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~--~~~~~~~~ 79 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQ--ESCLQGGS 79 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHH--HHTTTSCS
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhH--HhhcccCC
Confidence 4589999999999999999999999987766 45566666677777744456779999998773 3333 46778999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++++|||++++.+|+.+..|+..+...... .++|+++|+||+|+...+ +..++++++++.++++++
T Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 146 (175)
T 2nzj_A 80 AYVIVYSIADRGSFESASELRIQLRRTHQA--DHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFI 146 (175)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHCC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhcc--CCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEE
Confidence 999999999999999999999888765321 269999999999998654 566778889998888765
No 153
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.86 E-value=3.5e-21 Score=173.61 Aligned_cols=143 Identities=17% Similarity=0.200 Sum_probs=121.3
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCc
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 445 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d 445 (514)
....+||+++|++|||||||+++|++..+...+.++.+.++....+.+.+....+.+|||+|.+.+..++ ..+++.+|
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d 99 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT--SAYYRGAV 99 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTH--HHHHTTCC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhh--HHHhccCC
Confidence 4556999999999999999999999999988887888887877777777455667799999998887665 56789999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+ +...+++++++.++++++
T Consensus 100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVERWLKELYDHAE---ATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFL 165 (193)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHTTSC---TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999988876542 279999999999998754 567788899999888765
No 154
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=5.9e-21 Score=197.76 Aligned_cols=159 Identities=12% Similarity=0.103 Sum_probs=120.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLT 93 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v 93 (514)
+..+||+|+|++|||||||+|+|+++++....+ +.+ + ....+..+++++.||||||++.+...+..+++++|++|+|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~-T~~-~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V 396 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIP-TVG-F-NVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 396 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCC-CSS-E-EEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCC-ccc-e-eEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 567999999999999999999999988543322 111 1 2223556788999999999999998889999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHHhc-CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc------cCcEEEcCccccc
Q 010254 94 YACDRPETLDELSTFWLPELRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE------IETCIECSALKQI 166 (514)
Q Consensus 94 ~d~~~~~s~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~Sa~~~~ 166 (514)
||++++.+++.+...|...++.. ..++|+|||+||+|+.... .. ..+...++. ..++++|||++|.
T Consensus 397 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 469 (497)
T 3lvq_E 397 VDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM---KP----HEIQEKLGLTRIRDRNWYVQPSCATSGD 469 (497)
T ss_dssp EETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC---CH----HHHHHHTTCTTCCSSCEEEEECBTTTTB
T ss_pred EECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC---CH----HHHHHHhchhhhhcCCeEEEEEECCCCC
Confidence 99999999999887444444332 2479999999999997641 11 122222221 1158999999999
Q ss_pred cceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
|++++++.|.+.+...
T Consensus 470 ------------gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 470 ------------GLYEGLTWLTSNYKSK 485 (497)
T ss_dssp ------------THHHHHHHHHHHCC--
T ss_pred ------------CHHHHHHHHHHHHHhc
Confidence 9999999999887643
No 155
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.86 E-value=3.3e-21 Score=173.64 Aligned_cols=143 Identities=14% Similarity=0.245 Sum_probs=113.1
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCc
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 445 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d 445 (514)
.+..+||+++|++|||||||+++|++..+...+.++.+.++....+.+.+....+.+|||+|.+.+...+ ..+++.+|
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~d 100 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT--SAYYRSAK 100 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH--HHHHHHCS
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHH--HHHhcCCC
Confidence 3556899999999999999999999999888877888888888888877444567799999999888776 57889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHc-CCccc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFL-VMVLY 513 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~-~~~~~ 513 (514)
++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+ +..++++++++++ +++++
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~---~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 167 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYAS---EDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFC 167 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEE
Confidence 99999999999999999999888776543 269999999999997654 5567788888875 66654
No 156
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.5e-21 Score=177.88 Aligned_cols=142 Identities=19% Similarity=0.243 Sum_probs=115.3
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|++|||||||+++|++..+...+.++.+.++....+.+++....+.+|||+|++.+..++ ..+++.+|+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~ 88 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAIT--SAYYRGAVG 88 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCC--GGGTTTCCE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhH--HHHhccCCE
Confidence 456899999999999999999999999988888888888888888887444567799999999887665 678899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+|+|||++++.+|+.+..|+..+..... .++|++||+||+|+...+ +...++.++++.++++|+
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 153 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENAD---DNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFT 153 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC-----CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCC---CCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999998876542 269999999999998654 566788899999888775
No 157
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.85 E-value=8.3e-21 Score=172.69 Aligned_cols=141 Identities=17% Similarity=0.227 Sum_probs=118.8
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCc----------------------------
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGT---------------------------- 417 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 417 (514)
.+..+||+++|++|||||||+++|++..+...+.++.+.++....+...+..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3456999999999999999999999999888787888888888888876433
Q ss_pred ---------EEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeC
Q 010254 418 ---------KKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAK 488 (514)
Q Consensus 418 ---------~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 488 (514)
..+.+|||+|++.+.... ..+++.+|++++|||++++.+++.+..|+..+.... +.|+++|+||
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-----~~piilv~NK 156 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIV--PLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS-----NYIIILVANK 156 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTH--HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-----CCEEEEEEEC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHH--HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC-----CCcEEEEEEC
Confidence 567799999998887765 577899999999999999999999999999988765 5999999999
Q ss_pred CCCcccccchhhHHHHHHHcCCccc
Q 010254 489 DDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 489 ~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
+|+....+..+++.+++++++++++
T Consensus 157 ~D~~~~~~~~~~~~~~~~~~~~~~~ 181 (208)
T 3clv_A 157 IDKNKFQVDILEVQKYAQDNNLLFI 181 (208)
T ss_dssp TTCC-CCSCHHHHHHHHHHTTCEEE
T ss_pred CCcccccCCHHHHHHHHHHcCCcEE
Confidence 9943334667889999999988775
No 158
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1.1e-20 Score=168.03 Aligned_cols=142 Identities=16% Similarity=0.259 Sum_probs=111.7
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCC-CCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCc
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSD-NYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 445 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d 445 (514)
+..+||+++|++|||||||+++|++..+.. .+.++.+.++....+..++....+.+|||+|.+.+...+ ..+++.+|
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~--~~~~~~~d 85 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVT--HAYYRDAH 85 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------CCGGGCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHH--HHHccCCC
Confidence 456899999999999999999999998854 455677777776666776444567799999999888766 67889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+ +..++.+++++.++++++
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQ---HDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFM 151 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEE
Confidence 99999999999999999999988877542 279999999999998654 567778889998888765
No 159
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.85 E-value=2.9e-21 Score=181.29 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=111.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccc---ccceeCCeeEEEEEeCCCCccchh----------hHHHh
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRL---PEDFYPDRVPITIIDTPSSVEDRG----------KLGEE 83 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~---~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~ 83 (514)
.+|+++|+||||||||+|+|++.++ .++..+++|. ...+..++..+.+|||||+..+.. ....+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~---~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ---RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE---EEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC---CccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 3899999999999999999999863 2333455553 334445567999999999976653 33455
Q ss_pred h--hccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcC
Q 010254 84 L--RRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECS 161 (514)
Q Consensus 84 ~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 161 (514)
+ .++|++++|+|+++.++.. ++..++... ++|+++|+||+|+... +. .......+.+.++. +++++|
T Consensus 79 ~~~~~~d~vi~VvDas~~~~~~----~l~~~l~~~--~~pvilv~NK~Dl~~~-~~--~~~~~~~l~~~lg~--~vi~~S 147 (256)
T 3iby_A 79 VIDLEYDCIINVIDACHLERHL----YLTSQLFEL--GKPVVVALNMMDIAEH-RG--ISIDTEKLESLLGC--SVIPIQ 147 (256)
T ss_dssp HHHSCCSEEEEEEEGGGHHHHH----HHHHHHTTS--CSCEEEEEECHHHHHH-TT--CEECHHHHHHHHCS--CEEECB
T ss_pred HhhCCCCEEEEEeeCCCchhHH----HHHHHHHHc--CCCEEEEEEChhcCCc-CC--cHHHHHHHHHHcCC--CEEEEE
Confidence 6 8999999999988743322 266666666 8999999999998764 11 11234557777764 899999
Q ss_pred ccccccceecCCCCChhhHHHHHHHHHHH
Q 010254 162 ALKQIQVKCFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 162 a~~~~~~~~f~~~l~~~~i~~L~~~i~~~ 190 (514)
|++|. |+++|++.+.+.
T Consensus 148 A~~g~------------gi~el~~~i~~~ 164 (256)
T 3iby_A 148 AHKNI------------GIPALQQSLLHC 164 (256)
T ss_dssp GGGTB------------SHHHHHHHHHTC
T ss_pred CCCCC------------CHHHHHHHHHhh
Confidence 99999 999999999887
No 160
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=6.7e-21 Score=171.87 Aligned_cols=142 Identities=16% Similarity=0.258 Sum_probs=121.1
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|++..+...+.++.+.++....+.+.+....+.+|||+|.+.+..++ ..+++.+|++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~i 91 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT--PSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSH--HHHHTTCCEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhh--HHHhccCCEE
Confidence 35899999999999999999999999888887888888888888877455677799999998887665 5778999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
++|||++++.+++.+..|+..+...... .++|+++|+||+|+....+..+++.+++++++++|+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTR--NDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFI 155 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSC--SCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCc--CCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999988765422 269999999999996655667788899999988765
No 161
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=181.92 Aligned_cols=163 Identities=15% Similarity=0.075 Sum_probs=108.2
Q ss_pred CCCCceeEEEEEcCC---------CCCHHHHHHHHhcCCCCCCCCCCCCCc-cc-----ccc--------------eeCC
Q 010254 11 PGGKTGVRIVVCGEK---------GTGKSSLIVTAAADTFPANVPPVLPPT-RL-----PED--------------FYPD 61 (514)
Q Consensus 11 ~~~~~~~~I~ivG~~---------nvGKSsLin~l~~~~~~~~~~~~~~~t-t~-----~~~--------------~~~~ 61 (514)
...+..+||+|+|++ |||||||+|+|+++.+........+++ +. ... ++..
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 334667999999999 999999999999954323323323332 11 111 2345
Q ss_pred eeEEEEEe-----------------------CCCCccchhhHHHhhh---------------------ccCEEEEEEeCC
Q 010254 62 RVPITIID-----------------------TPSSVEDRGKLGEELR---------------------RADAVVLTYACD 97 (514)
Q Consensus 62 ~~~~~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~ad~ii~v~d~~ 97 (514)
.+.+.||| ++|.+.+......+++ +||++|+|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 67899999 3344433333333444 799999999999
Q ss_pred Cc--ccHHHHHHHHHHHHHhc--CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCC
Q 010254 98 RP--ETLDELSTFWLPELRRL--EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNS 173 (514)
Q Consensus 98 ~~--~s~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~ 173 (514)
++ .+++.+.. |+..+... ..++|++||+||+|+... +.+ +....++...... ++++|||++|.
T Consensus 174 ~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~-~~v---~~~~~~~~~~~~~-~~~e~SAk~g~------- 240 (255)
T 3c5h_A 174 RGMNRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVE-RYI---RDAHTFALSKKNL-QVVETSARSNV------- 240 (255)
T ss_dssp C----CHHHHHH-HHHHHHHHHHHTTCCEEEEEECGGGBCH-HHH---HHHHHHHHTSSSC-CEEECBTTTTB-------
T ss_pred CCchhhHHHHHH-HHHHHHHHhccCCCCEEEEEEccccccc-HHH---HHHHHHHHhcCCC-eEEEEECCCCC-------
Confidence 98 89998885 88777654 257999999999999754 222 2334444432222 89999999999
Q ss_pred CCChhhHHHHHHHHHHHh
Q 010254 174 PLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 174 ~l~~~~i~~L~~~i~~~~ 191 (514)
|++++++.|.+.+
T Consensus 241 -----gv~elf~~l~~~l 253 (255)
T 3c5h_A 241 -----NVDLAFSTLVQLI 253 (255)
T ss_dssp -----SHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHh
Confidence 9999999887754
No 162
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.85 E-value=3.7e-21 Score=181.92 Aligned_cols=151 Identities=18% Similarity=0.148 Sum_probs=113.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccch------hhHHHhhh-
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDR------GKLGEELR- 85 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~- 85 (514)
.++|+++|+||||||||+|+|++.+. .++..+++|+. ..+.. +..+.+|||||++.+. .....++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~---~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ---RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC---CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC---cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 58999999999999999999999763 23334555533 23334 6789999999998764 33455565
Q ss_pred -ccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccc
Q 010254 86 -RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALK 164 (514)
Q Consensus 86 -~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~ 164 (514)
.+|++++|+|+++.++ .. +|...+... ++|+++|+||+|+... +... .....+.+.++. ++++|||++
T Consensus 79 ~~~d~vi~V~D~t~~e~---~~-~~~~~l~~~--~~p~ilv~NK~Dl~~~-~~~~--~~~~~l~~~lg~--~vi~~SA~~ 147 (272)
T 3b1v_A 79 QRADSILNVVDATNLER---NL-YLTTQLIET--GIPVTIALNMIDVLDG-QGKK--INVDKLSYHLGV--PVVATSALK 147 (272)
T ss_dssp TCCSEEEEEEEGGGHHH---HH-HHHHHHHHT--CSCEEEEEECHHHHHH-TTCC--CCHHHHHHHHTS--CEEECBTTT
T ss_pred CCCCEEEEEecCCchHh---HH-HHHHHHHhc--CCCEEEEEEChhhCCc-CCcH--HHHHHHHHHcCC--CEEEEEccC
Confidence 6999999999887533 22 377777665 8999999999998654 2222 234567777764 899999999
Q ss_pred cccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 165 QIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 165 ~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
|. |+++|++.+.+.+..
T Consensus 148 g~------------gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 148 QT------------GVDQVVKKAAHTTTS 164 (272)
T ss_dssp TB------------SHHHHHHHHHHSCTT
T ss_pred CC------------CHHHHHHHHHHHHhh
Confidence 99 999999999886643
No 163
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.85 E-value=8.9e-21 Score=166.35 Aligned_cols=139 Identities=20% Similarity=0.270 Sum_probs=94.6
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.+||+++|++|||||||+++|.+..+.... ++.++.+. ..+...+......+|||+|++.+..+. ..+++.+|+++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~--~~~~~~~~~~i 77 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWLP--GHCMAMGDAYV 77 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEE-EEEEETTEEEEEEEEECC-----------------CCEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC-CccccceE-EEEEECCEEEEEEEEECCCCccchhhh--hhhhhhCCEEE
Confidence 479999999999999999999988776554 44444443 455566455567799999999888766 57889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+|||++++++|+.+..|+..+...... +++|+++|+||+|+...+ +...+++++++.++++++
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (166)
T 3q72_A 78 IVYSVTDKGSFEKASELRVQLRRARQT--DDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFI 141 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHCC-----CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEE
Confidence 999999999999999999988775322 279999999999998655 667788899999998875
No 164
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.85 E-value=1.8e-20 Score=168.79 Aligned_cols=143 Identities=12% Similarity=0.178 Sum_probs=119.5
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEE-EEEEECCCC---------cEEEEEEecCChhHHHhhhc
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYA-VNVVDQPGG---------TKKTVVLREIPEEAVAKLLS 436 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~dt~g~~~~~~~~~ 436 (514)
+..+||+++|++|||||||+++|++..+...+.++.+.++. ...+...+. ...+.+|||+|.+.+....
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~- 87 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT- 87 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH-
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH-
Confidence 45689999999999999999999999988777777777766 566666633 4577799999999888776
Q ss_pred CccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 437 NKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 437 ~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
..+++.+|++++|||++++.+++.+..|+..+...... .+.|+++|+||+|+...+ +..++++++++.++++++
T Consensus 88 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 88 -TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS--ENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp -HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS--SSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred -HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence 67889999999999999999999999999888775432 269999999999998754 557788899999888765
No 165
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.85 E-value=1.1e-20 Score=169.08 Aligned_cols=140 Identities=17% Similarity=0.208 Sum_probs=114.2
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+||+++|++|||||||+++|++..+...+.++.+..+. ..+.+.+....+.+|||+|++.|..+. ..+++.+|+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~ 81 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVR--PLSYPDSDA 81 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTG--GGGCTTCSE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhH--HhhcCCCcE
Confidence 34689999999999999999999999988777777765553 456666455677799999999887766 578899999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcC-Cc
Q 010254 447 AVFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLV-MV 511 (514)
Q Consensus 447 vilv~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~-~~ 511 (514)
+++|||++++.||+.+ ..|+..+.... ++.|+++|+||+|+..+ .+..+++.+++++++ ++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEFC----PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 157 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC----TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHC----CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence 9999999999999998 68888877654 27999999999999752 255677889999887 56
Q ss_pred cc
Q 010254 512 LY 513 (514)
Q Consensus 512 ~~ 513 (514)
|+
T Consensus 158 ~~ 159 (184)
T 1m7b_A 158 YI 159 (184)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 166
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=8.5e-21 Score=173.84 Aligned_cols=142 Identities=18% Similarity=0.269 Sum_probs=119.5
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|++|||||||+++|++..+...+.++.+.++....+.+++....+.+|||+|.+.+...+ ..+++.+|+
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ 95 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTIT--TAYYRGAMG 95 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCC--HHHHTTCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHH--HHHhccCCE
Confidence 456899999999999999999999999887787888888888888887444567799999998887655 678899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||++++.+|+.+..|+..+..... .+.|+++|+||+|+....+...++.++++.++++++
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 159 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHAN---DEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFI 159 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTT---TCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999988877542 269999999999996544667788889999888765
No 167
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.85 E-value=6.5e-21 Score=169.32 Aligned_cols=141 Identities=18% Similarity=0.295 Sum_probs=119.4
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|++..+...+.++.+.++....+.+++....+.+|||+|.+.+...+ ..+++.+|++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~--~~~~~~~d~~ 90 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--PSYIRDSTVA 90 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGS--HHHHHTCSEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHH--HHHhcCCCEE
Confidence 35899999999999999999999999888887888877877888777444567799999998887766 5778999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+ +...+..++++.++++++
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 154 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERG---SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFI 154 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHT---TSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEE
Confidence 999999999999999999988776532 269999999999997654 556778889998888765
No 168
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.85 E-value=4.5e-21 Score=173.79 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=109.1
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCc
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 445 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d 445 (514)
.+..+||+++|++|||||||+++|++..+...+.++.+.++....+.+++....+.+|||+|.+.+...+ ..+++.+|
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d 102 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIA--KSYFRKAD 102 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHH--HHHHHHCS
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhH--HHHHhhCC
Confidence 3456999999999999999999999999877777788877877888777455667799999998887766 57789999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc-------cccchhhHHHHHHHcCCccc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS-------FAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~ 513 (514)
++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.. ..+..+++++++++++++|+
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 174 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDAAH---ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFC 174 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEE
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEE
Confidence 99999999999999999999988876542 2699999999999963 12456778889999888775
No 169
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.85 E-value=9.1e-21 Score=172.88 Aligned_cols=145 Identities=19% Similarity=0.219 Sum_probs=89.6
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCC--CCCCCCCCCCCccEEEEEEECCCC--cEEEEEEecCChhHHHhhhcCccccc
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGR--PFSDNYTPTTDERYAVNVVDQPGG--TKKTVVLREIPEEAVAKLLSNKDSLA 442 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~dt~g~~~~~~~~~~~~~~~ 442 (514)
...+||+++|++|||||||+++|++. .+...+.++.+.++....+.+++. ...+.+|||+|.+.+...+ ..+++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~ 95 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQI--SQYWN 95 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHH--STTCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHH--HHHHh
Confidence 45689999999999999999999999 777666677776777778888744 5677899999999998877 67889
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc-cc-cchhhHHHHHHHcCCccc
Q 010254 443 ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS-FA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 443 ~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~-~~~~~~~~~~~~~~~~~~ 513 (514)
.+|++++|||++++.+|+.+..|+..+.........+.|+++|+||+|+.. .+ +..+++.+++++++++++
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 168 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFF 168 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEE
T ss_pred hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999998876431012799999999999987 44 567889999999988765
No 170
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.84 E-value=1.4e-20 Score=168.17 Aligned_cols=138 Identities=20% Similarity=0.286 Sum_probs=111.1
Q ss_pred ccCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccC
Q 010254 365 AERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAAC 444 (514)
Q Consensus 365 ~~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~ 444 (514)
.....+||+++|++|||||||+++|+++.+...+.++ +..+ ...+.+++....+.+|||+|++.+. +++.+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~ 86 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-------FAAWV 86 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-------HHHHC
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-------eecCC
Confidence 3456799999999999999999999999988777665 3333 3667777444566789999998776 55789
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc--cc-cchhhHHHHHHHcC-Cccc
Q 010254 445 DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS--FA-MAIQDSTRVFTFLV-MVLY 513 (514)
Q Consensus 445 d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~--~~-~~~~~~~~~~~~~~-~~~~ 513 (514)
|++++|||++++.||+.+..|+..+...... .+.|+++|+||+|+.. .+ +..+++.+++++++ ++|+
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~ 157 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNA--SEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYY 157 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTSCG--GGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEE
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEE
Confidence 9999999999999999999999998876421 2699999999999952 23 66788999999987 7665
No 171
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.84 E-value=1.7e-20 Score=166.35 Aligned_cols=145 Identities=14% Similarity=0.219 Sum_probs=115.1
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+||+++|++|||||||+++|++..+...+.++.+.++....+.+++....+.+|||+|.+.+...+ ..+++.+|+
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~ 82 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLR--TPFYRGSDC 82 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHH--GGGGTTCSE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhH--HHHHhcCCE
Confidence 346899999999999999999999999887777888877777777777444577799999999888776 578899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCCCCcEEEEEeCCCCcccccchhhHHHHHH-HcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGE-DTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFT-FLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~ 513 (514)
+++|||++++.+++.+..|+..+..... ....+.|+++|+||+|+....+..+++.++++ ..+++++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 151 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYF 151 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEE
Confidence 9999999999999999999888765431 11127899999999999854566778888888 4455554
No 172
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.84 E-value=1.4e-20 Score=165.06 Aligned_cols=140 Identities=17% Similarity=0.236 Sum_probs=114.5
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+.+....+.+|||+|.+.+..+. ...++.+|+++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~--~~~~~~~~~~i 79 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMR--DLYIKNGQGFI 79 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHH--HHHHHHCSEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHH--HHHhccCCEEE
Confidence 48999999999999999999999988877766665433 4566666444567799999998887766 56788999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+|||++++.+++.+..|+..+...... .+.|+++|+||+|+...+ +...+..+++++++++++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T 1kao_A 80 LVYSLVNQQSFQDIKPMRDQIIRVKRY--EKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFM 143 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTT--SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEE
Confidence 999999999999999998887765432 279999999999997654 567778889999888765
No 173
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.84 E-value=1e-20 Score=168.07 Aligned_cols=138 Identities=19% Similarity=0.235 Sum_probs=106.2
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+||+++|++|||||||+++|+++.+.. +.++.+..+ .+.+.+++....+.+|||+|++++ .+++++|+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~d~ 75 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-------KFSGWADA 75 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCCH-------HHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCchh-------HHHHhCCE
Confidence 346899999999999999999999999876 556666444 566667644456779999998763 35678999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCc--ccc-cchhhHHHHHHHc-CCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD--SFA-MAIQDSTRVFTFL-VMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~--~~~-~~~~~~~~~~~~~-~~~~~ 513 (514)
+++|||++++.||+.+..|+..+........+++|+++|+||+|+. ..+ +..+++.++++++ +++|+
T Consensus 76 ~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~ 146 (178)
T 2iwr_A 76 VIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYY 146 (178)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEE
Confidence 9999999999999999998666554322112379999999999994 223 5677888898876 56654
No 174
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.84 E-value=4.7e-21 Score=170.20 Aligned_cols=144 Identities=17% Similarity=0.217 Sum_probs=116.9
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCC-cEEEEEEecCChhHHHhhhcCccccccCc
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGG-TKKTVVLREIPEEAVAKLLSNKDSLAACD 445 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~dt~g~~~~~~~~~~~~~~~~~d 445 (514)
...+||+++|++|||||||+++|++..+...+.++.+.++....+.++++ ...+.+|||+|++.+...+ ..+++.+|
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~--~~~~~~~d 81 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKML--DKYIYGAQ 81 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTH--HHHHTTCS
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchh--hHHHhhCC
Confidence 34689999999999999999999999887666677777888888888742 3567799999998887666 57789999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCc-EEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVP-CLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++++|||++++.+|+.+..|+..+....... .+.| +++|+||+|+...+ +..+++.++++.++++++
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 2hxs_A 82 GVLLVYDITNYQSFENLEDWYTVVKKVSEES-ETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSH 150 (178)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHHHH-TCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhccc-CCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEE
Confidence 9999999999999999999988876632100 0345 89999999998754 567788899999988765
No 175
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.84 E-value=1.5e-20 Score=164.98 Aligned_cols=140 Identities=17% Similarity=0.244 Sum_probs=114.2
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.+||+++|++|||||||+++|+++.+...+.++.+..+. ..+...+....+.+|||+|.+.+..+. ..+++.+|+++
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~~i 79 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMR--DLYMKNGQGFA 79 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHH--HHHHHHCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHH--HHHhccCCEEE
Confidence 489999999999999999999999888777777665544 556666455667799999998877666 56788999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHc-CCccc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFL-VMVLY 513 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~-~~~~~ 513 (514)
+|||++++.+|+.+..|+..+...... .+.|+++|+||+|+...+ +..+++.++++++ +++++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 144 (167)
T 1c1y_A 80 LVYSITAQSTFNDLQDLREQILRVKDT--EDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFL 144 (167)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCC--SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCc--CCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEE
Confidence 999999999999999998887664321 279999999999998755 5577888899887 66664
No 176
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.84 E-value=2.1e-20 Score=168.60 Aligned_cols=141 Identities=20% Similarity=0.237 Sum_probs=115.4
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCc
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 445 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d 445 (514)
....+||+++|++|||||||+++|++..+...+.++.+..+. ..+...+....+.+|||+|++.+..+. ..+++++|
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d 96 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLR--PLSYADSD 96 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTG--GGGCTTCS
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHh--HhhccCCc
Confidence 345699999999999999999999999988777777766555 345555344556799999999988776 67889999
Q ss_pred EEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc---ccchhhHHHHHHHcCCc-cc
Q 010254 446 IAVFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDSF---AMAIQDSTRVFTFLVMV-LY 513 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~-~~ 513 (514)
++++|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+..+ .+..+++.++++.+++. |+
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHYI----DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYI 165 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC----TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEE
Confidence 99999999999999997 67888877654 26999999999999753 35678899999999987 54
No 177
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.84 E-value=2.3e-20 Score=169.82 Aligned_cols=140 Identities=17% Similarity=0.208 Sum_probs=114.4
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+||+++|++|||||||+++|++..+...+.++.+..+. ..+.+.+....+.+|||+|++.|..+. ..+++.+|+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~ 102 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVR--PLSYPDSDA 102 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEESSSSEEEEEEEEECCSGGGTTTG--GGGCTTCSE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-EEEEECCEEEEEEEEeCCCcHhhhHHH--HhhccCCCE
Confidence 35689999999999999999999999998777777665553 456666455677899999999887766 578899999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcC-Cc
Q 010254 447 AVFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLV-MV 511 (514)
Q Consensus 447 vilv~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~-~~ 511 (514)
+|+|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+... .+..+++++++++++ ++
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 178 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFC----PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 178 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC----TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHC----CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCE
Confidence 9999999999999999 78988887654 27999999999999742 245677889999887 46
Q ss_pred cc
Q 010254 512 LY 513 (514)
Q Consensus 512 ~~ 513 (514)
|+
T Consensus 179 ~~ 180 (205)
T 1gwn_A 179 YI 180 (205)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 178
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.84 E-value=9.7e-21 Score=174.08 Aligned_cols=144 Identities=10% Similarity=0.127 Sum_probs=118.1
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCC----------cEEEEEEecCChhHHHhhh
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGG----------TKKTVVLREIPEEAVAKLL 435 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~dt~g~~~~~~~~ 435 (514)
.+..+||+++|++|||||||+++|++..+...+.++.+.++....+.+.+. ...+.+|||+|.+.+...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 355699999999999999999999999887666666666666666666533 4567799999999988776
Q ss_pred cCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 436 SNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 436 ~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
..+++.+|++|+|||++++.+++.+..|+..+...... .++|+++|+||+|+...+ +...+++++++.++++++
T Consensus 102 --~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~--~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 176 (217)
T 2f7s_A 102 --TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYC--ENPDIVLIGNKADLPDQREVNERQARELADKYGIPYF 176 (217)
T ss_dssp --HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTT--TCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEE
T ss_pred --HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCc--CCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEE
Confidence 57889999999999999999999999998877654321 279999999999998754 567788999999988775
No 179
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.84 E-value=4.9e-21 Score=194.40 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=114.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCc----------cchhh-
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSV----------EDRGK- 79 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~----------~~~~~- 79 (514)
...++|+|+|+||||||||+|+|++..+ ..++..++||.. ..+..++..+.||||||+. .+...
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~--~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEER--VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTT--EEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCc--eeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHH
Confidence 3569999999999999999999999873 333445556633 2445556789999999983 23222
Q ss_pred HHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc--cCcE
Q 010254 80 LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--IETC 157 (514)
Q Consensus 80 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~ 157 (514)
...+++.+|++++|+|++++.+.++.. |+..+... ++|+++|+||+|+.+. +....++....+.+.+.. ..++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~~--~~~~~~~~--~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~l~~~~~~~~ 325 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDKR--IAGYAHEA--GKAVVIVVNKWDAVDK-DESTMKEFEENIRDHFQFLDYAPI 325 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHHHT--TCEEEEEEECGGGSCC-CTTHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHHH--HHHHHHHc--CCcEEEEEECccCCCc-chHHHHHHHHHHHHhcccCCCCCE
Confidence 235789999999999999998888764 88887765 8999999999999865 333333333445555432 2389
Q ss_pred EEcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 158 IECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 158 i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
++|||++|. |+++|.+.+.+.+.
T Consensus 326 ~~~SA~tg~------------~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 326 LFMSALTKK------------RIHTLMPAIIKASE 348 (436)
T ss_dssp EECCTTTCT------------TGGGHHHHHHHHHH
T ss_pred EEEecccCC------------CHHHHHHHHHHHHH
Confidence 999999999 88888887776654
No 180
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.84 E-value=2.7e-20 Score=163.38 Aligned_cols=141 Identities=19% Similarity=0.295 Sum_probs=112.3
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|++..+...+.++.+..+. ..+...+....+.+|||+|.+.+..+. ..+++.+|++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~~ 79 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIR--DNYFRSGEGF 79 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHH--HHHHHHCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHH--HHHhhcCCEE
Confidence 3589999999999999999999999887777666665443 445555344567799999998887766 5778999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++|||++++.+++.+..|+..+...... .+.|+++|+||+|+...+ +..+++.++++.++++++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T 1u8z_A 80 LCVFSITEMESFAATADFREQILRVKED--ENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYV 144 (168)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCC--TTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999887765432 269999999999997654 567788899998888765
No 181
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.84 E-value=1.7e-20 Score=166.91 Aligned_cols=142 Identities=18% Similarity=0.305 Sum_probs=115.1
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+||+++|++|||||||+++|++..+...+.++.+..+. ..+..++....+.+|||+|.+.+..+. ..+++.+|+
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~--~~~~~~~d~ 83 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMR--EQYMRAGHG 83 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCH--HHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHH--HHHHhhCCE
Confidence 45689999999999999999999999888777676665555 556666334567799999998887665 567889999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||++++.+++.+..|+..+...... .+.|+++|+||+|+...+ +...++.++++.++++++
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 149 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDR--DDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYF 149 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTS--SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEE
Confidence 99999999999999999999887543221 269999999999998754 567788889998888765
No 182
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.84 E-value=3.3e-20 Score=166.36 Aligned_cols=141 Identities=18% Similarity=0.228 Sum_probs=113.0
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+|+|++..+...+.++.+. .....+..++....+.+|||+|++.+..+. ..+++.+|++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~ 79 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMR--DQYMRTGEGF 79 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCE-EEEEEEEETTEEEEEEEEECCCC---CTTH--HHHHHHCSEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchh-eEEEEEEECCcEEEEEEEECCCcHHHHHHH--HHHHhcCCEE
Confidence 3589999999999999999999999887777665543 333555556344456689999999888776 5778899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
++|||++++.+|+.+..|+..+...... .+.|+++|+||+|+.......+...++++.++++++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 143 (189)
T 4dsu_A 80 LCVFAINNTKSFEDIHHYREQIKRVKDS--EDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFI 143 (189)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTC--SCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999888775432 279999999999998766778889999999998775
No 183
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.84 E-value=3.5e-20 Score=168.90 Aligned_cols=145 Identities=16% Similarity=0.225 Sum_probs=118.6
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|++|||||||+++|++..+...+.++.+.++....+.+.+....+.+|||+|.+.+..++ ..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ 83 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG--VAFYRGADC 83 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC--CGGGTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhH--HHHHhCCcE
Confidence 356899999999999999999999999888887888888888888887555678899999998887665 678899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCC-CCCCCcEEEEEeCCCCcccccchhhHHHHHH-HcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGED-TGFEVPCLIVAAKDDLDSFAMAIQDSTRVFT-FLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~ 513 (514)
+|+|||++++.+|+.+..|+..+...... ...+.|+++|+||+|+....+...++.++++ ..+++++
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYF 152 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEE
Confidence 99999999999999999998887654310 0126899999999999854466777888887 5566554
No 184
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.84 E-value=3.5e-20 Score=193.19 Aligned_cols=163 Identities=13% Similarity=0.130 Sum_probs=111.5
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccc--------ccce--eCCeeEEEEEeCCCCccchhhHH
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRL--------PEDF--YPDRVPITIIDTPSSVEDRGKLG 81 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~--------~~~~--~~~~~~~~l~Dt~G~~~~~~~~~ 81 (514)
.....+||+++|.+|||||||+|+|++..+.....++.+.... ...+ ...+..+.+|||||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3567899999999999999999999998875444433322211 1122 23468999999999998888888
Q ss_pred HhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcC
Q 010254 82 EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECS 161 (514)
Q Consensus 82 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 161 (514)
.+++.+|++|+|+|+++. +... +|+..+....++.|+|+|+||+|+... +....+ ....+...++. ++++||
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~-~~~~~l~~~~~~~pvilV~NK~Dl~~~-~~v~~~-~~~~~~~~~~~--~~~~vS 188 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKH-YWLRHIEKYGGKSPVIVVMNKIDENPS-YNIEQK-KINERFPAIEN--RFHRIS 188 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHH-HHHHHHHHHSSSCCEEEEECCTTTCTT-CCCCHH-HHHHHCGGGTT--CEEECC
T ss_pred HHccCCcEEEEEEeCCCc---hhHH-HHHHHHHHhCCCCCEEEEEECCCcccc-cccCHH-HHHHHHHhcCC--ceEEEe
Confidence 899999999999998765 3343 499999888778999999999999765 222222 22333333332 699999
Q ss_pred ccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 162 ALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 162 a~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
|++|. |+++|++.|.+.+...
T Consensus 189 A~~g~------------gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 189 CKNGD------------GVESIAKSLKSAVLHP 209 (535)
T ss_dssp C-----------------CTTHHHHHHHHHTCT
T ss_pred cCccc------------CHHHHHHHHHHHHhcc
Confidence 99999 8888998888877654
No 185
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.84 E-value=1.6e-20 Score=168.64 Aligned_cols=155 Identities=21% Similarity=0.233 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc-ceeCCeeEEEEEeCCCC-----------ccchhhHHHhh
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE-DFYPDRVPITIIDTPSS-----------VEDRGKLGEEL 84 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~-~~~~~~~~~~l~Dt~G~-----------~~~~~~~~~~~ 84 (514)
+||+|+|++|||||||+|+|++..+..... ++++... .+... .+.+|||||. +.+......++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKR---PGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSS---TTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCC---CCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 689999999999999999999988643322 3333221 22222 6899999994 34444555666
Q ss_pred hc-cCEEEEEEeCCCcccHHHHHHHHHHH---------HHhc-CCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc
Q 010254 85 RR-ADAVVLTYACDRPETLDELSTFWLPE---------LRRL-EVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE 153 (514)
Q Consensus 85 ~~-ad~ii~v~d~~~~~s~~~~~~~~~~~---------l~~~-~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (514)
+. ++++++|+++.+..++..+...|... +... ..++|+++|+||+|+... + .+....+++.++.
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~----~~~~~~~~~~~~~ 151 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN-V----QEVINFLAEKFEV 151 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC-H----HHHHHHHHHHHTC
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCc-H----HHHHHHHHHHhhh
Confidence 66 77666666666667777664446542 1111 137999999999999876 2 3345566666653
Q ss_pred c-----CcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 154 I-----ETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 154 ~-----~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
. .++++|||++|. |++++.+.|.+.+..
T Consensus 152 ~~~~~~~~~~~~Sa~~~~------------~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 152 PLSEIDKVFIPISAKFGD------------NIERLKNRIFEVIRE 184 (190)
T ss_dssp CGGGHHHHEEECCTTTCT------------THHHHHHHHHHHHHH
T ss_pred hhhccCCcEEEEecCCCC------------CHHHHHHHHHHhcch
Confidence 1 147999999999 999999999887654
No 186
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.84 E-value=1e-21 Score=178.01 Aligned_cols=142 Identities=20% Similarity=0.323 Sum_probs=115.7
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|++|||||||+|+|++..+...+.++.+.++....+.+++....+.+|||+|++.+..++ ..+++.+|+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~ 108 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT--SSYYRGAHG 108 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCS--CC--CCCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHH--HHHhhcCCE
Confidence 457999999999999999999999999887777788888888888887444567799999998887665 678899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+|+|||++++.+|+.+..|+..+...... +.|+++|+||+|+...+ +...+++++++.++++++
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 173 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQWLQEIDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFL 173 (199)
T ss_dssp EEECC-CCCSHHHHHHHHHHHHHHSCC-C---CSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhccC---CCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEE
Confidence 99999999999999999999998776432 69999999999998655 556778889999998876
No 187
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.83 E-value=4.1e-20 Score=168.25 Aligned_cols=143 Identities=19% Similarity=0.286 Sum_probs=117.2
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCc
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 445 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d 445 (514)
....+||+++|++|||||||+++|++..+...+.++.+..+. ..+.+++....+.+|||+|.+.+..+. ..+++.+|
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~~ 87 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIR--DNYFRSGE 87 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHH--HHHHHHCS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE-EEEEECCEEEEEEEEcCCChhhhHHHH--HHHHhhCC
Confidence 345689999999999999999999999987777666665443 455556344567799999998887776 57788999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++++|||+++..+|+.+..|+..+...... .+.|+++|+||+|+...+ +...++.++++.+++++|
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 154 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKED--ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYV 154 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTC--SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEE
Confidence 999999999999999999999888776432 269999999999998754 567788999999888765
No 188
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.83 E-value=5.9e-20 Score=163.57 Aligned_cols=145 Identities=17% Similarity=0.261 Sum_probs=106.4
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECC-CCcEEEEEEecCChhHHHhhhcCccccccCc
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQP-GGTKKTVVLREIPEEAVAKLLSNKDSLAACD 445 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d 445 (514)
+..+||+++|++|||||||+++|++..+...+.++.+.++....+.++ +....+.+|||+|++.+.... ..+++.+|
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d 83 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLG--VAFYRGAD 83 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------CCSTTCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhh--HHHhhcCC
Confidence 356899999999999999999999999888887888888888888776 334567799999999888766 67889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCC-CCCCCCcEEEEEeCCCCcccc--cchhhHHHHHH-HcCCccc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGE-DTGFEVPCLIVAAKDDLDSFA--MAIQDSTRVFT-FLVMVLY 513 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~-~~~~~~~ 513 (514)
++++|||++++.+++.+..|+..+..... ....+.|+++|+||+|+.... +...++.++++ ..+++++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~ 155 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLF 155 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEE
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEE
Confidence 99999999999999999999888765431 111279999999999996432 45677888887 3455543
No 189
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=4.7e-20 Score=166.31 Aligned_cols=140 Identities=20% Similarity=0.329 Sum_probs=115.2
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+||+++|++|||||||+++|++..+...+.++.+..+ ...+...+....+.+|||+|++.+..+. ..+++.+|+
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~--~~~~~~~d~ 92 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLR--PLSYPMTDV 92 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTG--GGGCTTCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHH--HHhcCCCCE
Confidence 3468999999999999999999999988877777776655 3556666445667799999998887766 578899999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC-c
Q 010254 447 AVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-V 511 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~-~ 511 (514)
+++|||++++.+|+.+. .|+..+.... ++.|+++|+||+|+... .+..+++.++++++++ +
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 168 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEYA----PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC 168 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHS----TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcE
Confidence 99999999999999997 7888887754 26999999999999763 2456788899999887 5
Q ss_pred cc
Q 010254 512 LY 513 (514)
Q Consensus 512 ~~ 513 (514)
|+
T Consensus 169 ~~ 170 (194)
T 2atx_A 169 YV 170 (194)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 190
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.83 E-value=3e-20 Score=170.92 Aligned_cols=148 Identities=18% Similarity=0.287 Sum_probs=101.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhc----cC
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRR----AD 88 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~----ad 88 (514)
....++|+|+|++|||||||+|+|++..+........++++... ....+.+|||||++.+...+..+++. +|
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 84 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK 84 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----eCceEEEEECCCcHHHHHHHHHHHHhccccCC
Confidence 34579999999999999999999999886543333333333222 46789999999999988888888877 99
Q ss_pred EEEEEEeCC-CcccHHHHHHHHHHHHHh-----cCCCCcEEEEEecccCcccccchh----HhhhhHHHHHHHhccCcEE
Q 010254 89 AVVLTYACD-RPETLDELSTFWLPELRR-----LEVKVPVIVVGCKLDLRDENQQVS----LEQVMMPIMQQFREIETCI 158 (514)
Q Consensus 89 ~ii~v~d~~-~~~s~~~~~~~~~~~l~~-----~~~~~pvilv~NK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~i 158 (514)
++|+|+|++ ++.++..... |+..+.. ...++|+++|+||+|+........ ..+....+....+. +++
T Consensus 85 ~~i~v~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~ 161 (218)
T 1nrj_B 85 GLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK--SLN 161 (218)
T ss_dssp EEEEEEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH--HHH
T ss_pred EEEEEEECCCChHHHHHHHH-HHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc--ccc
Confidence 999999999 8888888776 5444432 234899999999999987621111 12233444444443 789
Q ss_pred EcCcccccc
Q 010254 159 ECSALKQIQ 167 (514)
Q Consensus 159 ~~Sa~~~~~ 167 (514)
++||++|.+
T Consensus 162 ~~Sa~~~~~ 170 (218)
T 1nrj_B 162 EVERKINEE 170 (218)
T ss_dssp C--------
T ss_pred ccccccccc
Confidence 999999873
No 191
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.83 E-value=9.7e-20 Score=164.97 Aligned_cols=162 Identities=21% Similarity=0.280 Sum_probs=120.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
...++|+|+|++|||||||+++|++..+.....++.+... ....+....+.+.+|||+|.+.+......+++.+|+++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 3468999999999999999999999886544433222211 22334444578899999999888777788889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
+|+|+++..+++.+.. |+..+.... .+.|+++|+||+|+... +....+ ....++...+. .++++||+++.
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~i~~v~nK~Dl~~~-~~~~~~-~a~~l~~~~~~--~~~d~Sal~~~---- 153 (199)
T 2f9l_A 83 LVYDIAKHLTYENVER-WLKELRDHADSNIVIMLVGNKSDLRHL-RAVPTD-EARAFAEKNNL--SFIETSALDST---- 153 (199)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGG-CCSCHH-HHHHHHHHTTC--EEEECCTTTCT----
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEECcccccc-cCcCHH-HHHHHHHHcCC--eEEEEeCCCCC----
Confidence 9999999888887764 777766542 47899999999999764 333322 23456655543 78999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHhc
Q 010254 171 FNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|++++++.|.+.+.
T Consensus 154 --------~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 154 --------NVEEAFKNILTEIY 167 (199)
T ss_dssp --------THHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHH
Confidence 88888888877654
No 192
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.5e-20 Score=168.39 Aligned_cols=141 Identities=21% Similarity=0.276 Sum_probs=113.6
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+||+++|++|||||||+++|++..+...+.++.+..+. ..+.+.+....+.+|||+|.+. .... ..+++.+|+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~-~~~~--~~~~~~~d~ 101 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQED-TIQR--EGHMRWGEG 101 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCC-CHHH--HHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEE-EEEEECCEEEEEEEEECCCCCc-ccch--hhhhccCCE
Confidence 34689999999999999999999999988887777776553 4455553455677999999876 3333 567889999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||++++.+|+.+..|+..+...... .++|+++|+||+|+...+ +...++.+++++++++|+
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~--~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 167 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKP--KNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFY 167 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTT--SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCC--CCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEE
Confidence 99999999999999999998887764321 279999999999998754 567888899999988775
No 193
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.83 E-value=5.1e-20 Score=164.73 Aligned_cols=141 Identities=19% Similarity=0.294 Sum_probs=115.2
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|++..+...+.++.+..+. ..+...+....+.+|||+|.+.+..++ ..+++.+|++
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~~ 93 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIR--DNYFRSGEGF 93 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHH--HHHHHHCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE-EEEEECCEEEEEEEEECCCCcccHHHH--HHHhccCCEE
Confidence 4689999999999999999999999987777666665443 445555344567799999998887766 5778999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++|||++++.+++.+..|+..+...... .++|+++|+||+|+...+ +...+..+++++++++++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 158 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKED--ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYV 158 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCC--TTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999887765432 269999999999997754 567788899999988765
No 194
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.82 E-value=3.8e-20 Score=169.41 Aligned_cols=141 Identities=18% Similarity=0.267 Sum_probs=114.6
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCc
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 445 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d 445 (514)
....+||+++|++|||||||+++|++..+...+.++.+..+. ..+.+++....+.+|||+|++.+..++ ..+++.+|
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d 82 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLGLWDTAGQEDYSRLR--PLSYRGAD 82 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE-EEEECSSCEEEEEEECCCCCCCCCC----CGGGTTCS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEE-EEEEECCEEEEEEEEECCCcHHHHHHH--HhhccCCC
Confidence 345699999999999999999999999988777777776554 456666455677799999998887766 57889999
Q ss_pred EEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc---------chhhHHHHHHHcCC-ccc
Q 010254 446 IAVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM---------AIQDSTRVFTFLVM-VLY 513 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---------~~~~~~~~~~~~~~-~~~ 513 (514)
++++|||++++.+|+.+. .|+..+.... ++.|++||+||+|+...+. ...++.++++++++ +|+
T Consensus 83 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 157 (212)
T 2j0v_A 83 IFVLAFSLISKASYENVLKKWMPELRRFA----PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYI 157 (212)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC----TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEE
Confidence 999999999999999996 7988887764 2699999999999976542 56778889999886 654
No 195
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.82 E-value=8.5e-20 Score=164.29 Aligned_cols=142 Identities=17% Similarity=0.254 Sum_probs=105.3
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCC--CCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhH-HHhhhcCcccccc
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPF--SDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA-VAKLLSNKDSLAA 443 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~-~~~~~~~~~~~~~ 443 (514)
+..+||+++|++|||||||+|+|++... ...+ ++.+.++....+.+++......+|||+|.+. +..+. ..+++.
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~--~~~~~~ 80 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLH--DHCMQV 80 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTG--GGHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHH--Hhhccc
Confidence 3468999999999999999999996443 3333 4456666667777773444566899999766 33332 567788
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 444 CDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 444 ~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+|++++|||+++++||+.+..|+..+...... ++.|+++|+||+|+...+ +...++..++..++++|+
T Consensus 81 ~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~--~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 149 (192)
T 2cjw_A 81 GDAYLIVYSITDRASFEKASELRIQLRRARQT--EDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFI 149 (192)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT--SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC--CCCeEEEEEechhhhccccccHHHHHHHHHHhCCceE
Confidence 99999999999999999999998877654221 269999999999997654 556677888888888765
No 196
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.82 E-value=2.4e-20 Score=177.38 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=113.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccchh------hHHHhh
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRG------KLGEEL 84 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~ 84 (514)
|..++|+|+|++|||||||+|+|++..+ ..+..+++|.. ..+...+..+.+|||||+..+.. ....++
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~---~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 77 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQ---HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFI 77 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCE---EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCc---ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhh
Confidence 3468999999999999999999999874 22334444432 33445567899999999987654 344455
Q ss_pred --hccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCC-CcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcC
Q 010254 85 --RRADAVVLTYACDRPETLDELSTFWLPELRRLEVK-VPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECS 161 (514)
Q Consensus 85 --~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~-~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 161 (514)
.++|++++|+|+++.. ... +|...+... + +|+++|+||+|+... +.... ....+.+.++. +++++|
T Consensus 78 ~~~~~d~vi~v~D~~~~~---~~~-~~~~~~~~~--~~~p~ilv~NK~Dl~~~-~~~~~--~~~~l~~~lg~--~~~~~S 146 (271)
T 3k53_A 78 LDGNADVIVDIVDSTCLM---RNL-FLTLELFEM--EVKNIILVLNKFDLLKK-KGAKI--DIKKMRKELGV--PVIPTN 146 (271)
T ss_dssp HTTCCSEEEEEEEGGGHH---HHH-HHHHHHHHT--TCCSEEEEEECHHHHHH-HTCCC--CHHHHHHHHSS--CEEECB
T ss_pred hccCCcEEEEEecCCcch---hhH-HHHHHHHhc--CCCCEEEEEEChhcCcc-cccHH--HHHHHHHHcCC--cEEEEE
Confidence 6899999999988752 222 255555554 5 999999999998754 22221 24567777764 899999
Q ss_pred ccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 162 ALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 162 a~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
|++|. |++++++.+.+.+...
T Consensus 147 a~~g~------------gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 147 AKKGE------------GVEELKRMIALMAEGK 167 (271)
T ss_dssp GGGTB------------THHHHHHHHHHHHHTC
T ss_pred eCCCC------------CHHHHHHHHHHHHhcc
Confidence 99999 9999999998877543
No 197
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.82 E-value=1.8e-19 Score=161.92 Aligned_cols=141 Identities=18% Similarity=0.242 Sum_probs=105.8
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|.+|||||||+++|++..+...+.++.+..+ ...+...+....+.+|||+|.+.+.... ..+++.+|++
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~~ 96 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMR--DQYMRTGEGF 96 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-------------CTTCSEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHH--HHhhCcCCEE
Confidence 358999999999999999999999888777666555443 3455555344567799999998887766 5788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
++|||+++..+++.+..|+..+...... .+.|+++|+||+|+....+..++.++++++++++++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDS--DDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFI 160 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTC--SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEE
Confidence 9999999999999999998887765322 169999999999998755667888999999988765
No 198
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.82 E-value=1.9e-19 Score=161.84 Aligned_cols=161 Identities=21% Similarity=0.286 Sum_probs=120.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
...++|+|+|++|||||||+++|++..+.....++.+... ..+.+....+.+.+|||+|.+++......+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 4569999999999999999999999886544433222111 22233344567788999999988888888899999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCcccccccee
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKC 170 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~ 170 (514)
+|+|+++..+++.+.. |+..+.... .+.|+++|+||+|+.+. +....+ ....++...+. .++++||+++.
T Consensus 107 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~i~~v~nK~Dl~~~-~~~~~~-~a~~l~~~~~~--~~ld~Sald~~---- 177 (191)
T 1oix_A 107 LVYDIAKHLTYENVER-WLKELRDHADSNIVIMLVGNKSDLRHL-RAVPTD-EARAFAEKNGL--SFIETSALDST---- 177 (191)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGG-CCSCHH-HHHHHHHHTTC--EEEECCTTTCT----
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECcccccc-cccCHH-HHHHHHHHcCC--EEEEEeCCCCC----
Confidence 9999999888877764 777666532 47899999999999764 222222 33456655543 78999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHh
Q 010254 171 FNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 171 f~~~l~~~~i~~L~~~i~~~~ 191 (514)
+++++.+.|.+.+
T Consensus 178 --------~v~~l~~~l~~~i 190 (191)
T 1oix_A 178 --------NVEAAFQTILTEI 190 (191)
T ss_dssp --------THHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHh
Confidence 9999998887653
No 199
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=4.9e-20 Score=188.15 Aligned_cols=162 Identities=15% Similarity=0.144 Sum_probs=115.0
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCC----------ccchhh
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSS----------VEDRGK 79 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~----------~~~~~~ 79 (514)
....++|+++|++|||||||+|+|++.. ...+...++||.. ..+...+..+.||||||+ +.+...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~--~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEE--RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTST--TEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCC--ccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHH
Confidence 3567999999999999999999999876 3344445566633 345556779999999994 444433
Q ss_pred H-HHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc--cCc
Q 010254 80 L-GEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--IET 156 (514)
Q Consensus 80 ~-~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~ 156 (514)
. ..+++.+|++++|+|++++.+... ..|...+... ++|+++|+||+|+.+. +....++..+.+.+.+.. ..+
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~~--~~~~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~ 344 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHEA--GKAVVIVVNKWDAVDK-DESTMKEFEENIRDHFQFLDYAP 344 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCEEEEEEECGGGSCC-CSSHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHHc--CCCEEEEEEChhcCCC-chHHHHHHHHHHHHhcccCCCCC
Confidence 3 347899999999999987655443 3488887775 8999999999999865 334444443444444331 238
Q ss_pred EEEcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 157 CIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 157 ~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
+++|||++|. |+++|.+.+.+.+..
T Consensus 345 ~~~~SA~~g~------------gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 345 ILFMSALTKK------------RIHTLMPAIIKASEN 369 (456)
T ss_dssp EEECCTTTCT------------TGGGHHHHHHHHHHH
T ss_pred EEEEcCCCCc------------CHHHHHHHHHHHHHH
Confidence 9999999999 888888888776653
No 200
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.82 E-value=9.3e-20 Score=167.11 Aligned_cols=139 Identities=19% Similarity=0.272 Sum_probs=94.4
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|+++.+...+.++.+..+. ..+.+.+....+.+|||+|++.+..+. ..+++++|++
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~d~~ 109 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYM-VNLQVKGKPVHLHIWDTAGQDDYDRLR--PLFYPDASVL 109 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEE-EEEEETTEEEEEEEEEC-----------------CEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCchhhhHHH--HHHhccCCEE
Confidence 4689999999999999999999999987777666655443 455566344567799999999988776 5788999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-------------cchhhHHHHHHHcCC-cc
Q 010254 448 VFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-------------MAIQDSTRVFTFLVM-VL 512 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~-~~ 512 (514)
++|||++++.+|+.+. .|+..+.... +++|+++|+||+|+...+ +...++.++++++++ +|
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 185 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFC----KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAY 185 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC----SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEE
Confidence 9999999999999996 7888887654 269999999999997642 345677889998887 55
Q ss_pred c
Q 010254 513 Y 513 (514)
Q Consensus 513 ~ 513 (514)
+
T Consensus 186 ~ 186 (214)
T 2j1l_A 186 L 186 (214)
T ss_dssp E
T ss_pred E
Confidence 4
No 201
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=7.6e-20 Score=161.18 Aligned_cols=141 Identities=16% Similarity=0.245 Sum_probs=110.8
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.+||+++|++|||||||+++|+++.+...+.++.+..+. ..+...+....+.+|||+|.+.+..+. ..+++.+|+++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~--~~~~~~~~~~i 79 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQ--RLSISKGHAFI 79 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHH--HHHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHH--HHhcccCCEEE
Confidence 589999999999999999999999887766666554443 344445344567799999998877666 56788999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+|||++++.+++.+..|+..+...... .++.|+++|+||+|+...+ +...+..++++.++++++
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 144 (172)
T 2erx_A 80 LVYSITSRQSLEELKPIYEQICEIKGD-VESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFM 144 (172)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCC-CCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEE
Confidence 999999999999999998777664321 1269999999999997654 556778888988888765
No 202
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.82 E-value=8.5e-20 Score=165.57 Aligned_cols=141 Identities=17% Similarity=0.264 Sum_probs=105.2
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCc
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 445 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d 445 (514)
....+||+++|++|||||||+++|++..+...+.++.+..+ ...+..++....+.+|||+|.+.+..++ ..+++++|
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~ 93 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLR--PLCYTNTD 93 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSG--GGGGTTCS
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHh--HhhcCCCc
Confidence 34568999999999999999999999988777766665444 3455555334456699999998887766 56889999
Q ss_pred EEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC-
Q 010254 446 IAVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM- 510 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~- 510 (514)
++++|||++++.+|+.+. .|+..+.... ++.|+++|+||+|+... .+..+++.++++.+++
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHC----PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAA 169 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC----SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCc
Confidence 999999999999999997 7988887754 26999999999999752 2456778889998887
Q ss_pred ccc
Q 010254 511 VLY 513 (514)
Q Consensus 511 ~~~ 513 (514)
+|+
T Consensus 170 ~~~ 172 (201)
T 2q3h_A 170 SYI 172 (201)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 203
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.82 E-value=2.2e-20 Score=178.00 Aligned_cols=158 Identities=11% Similarity=0.140 Sum_probs=103.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchh---hHHHhhhccCEEEEEE
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRG---KLGEELRRADAVVLTY 94 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~ad~ii~v~ 94 (514)
||+++|+.|||||||++++.++-+........++.......-...+++.||||||++++.. ....++++++++|+||
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~ 80 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVI 80 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEEC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEE
Confidence 6899999999999999998876432221111111111111112458899999999999864 4678999999999999
Q ss_pred eCCCcccHHHHHHHH---HHHHHhcCCCCcEEEEEecccCcccc-cchhHhh----hhHHHHHH----HhccCcEEEcCc
Q 010254 95 ACDRPETLDELSTFW---LPELRRLEVKVPVIVVGCKLDLRDEN-QQVSLEQ----VMMPIMQQ----FREIETCIECSA 162 (514)
Q Consensus 95 d~~~~~s~~~~~~~~---~~~l~~~~~~~pvilv~NK~Dl~~~~-~~~~~~~----~~~~~~~~----~~~~~~~i~~Sa 162 (514)
|++++ ..+... .| +..+....++.|+++|+||+|+.++. |.....+ ..+++++. ++ .++++|||
T Consensus 81 Ditd~-~~~~~~-~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~--i~f~eTSA 156 (331)
T 3r7w_B 81 DSQDE-YINAIT-NLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQ--VSFYLTSI 156 (331)
T ss_dssp CCSSC-TTHHHH-HHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCC--EEEECCCS
T ss_pred ECCch-HHHHHH-HHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccC--ceEEEecc
Confidence 99987 333332 24 44444445789999999999998652 1111111 12223332 11 17999999
Q ss_pred cccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 163 LKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 163 ~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
++ . ++.+....|.+.+-
T Consensus 157 kd-~------------nV~eAFs~iv~~li 173 (331)
T 3r7w_B 157 FD-H------------SIYEAFSRIVQKLI 173 (331)
T ss_dssp SS-S------------HHHHHHHHHHTTSS
T ss_pred CC-C------------cHHHHHHHHHHHHH
Confidence 97 5 67777777766543
No 204
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.82 E-value=1.3e-19 Score=164.34 Aligned_cols=140 Identities=19% Similarity=0.239 Sum_probs=113.7
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+||+++|++|||||||+++|.+..+...+.++.+..+.. .+..++....+.+|||+|++.+..+. ..+++.+|+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~ 99 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLR--PLSYPDTDV 99 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTG--GGGCTTCSE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHH--HHhcCCCCE
Confidence 456899999999999999999999999888887777776653 35556344567799999999888766 568899999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC-c
Q 010254 447 AVFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-V 511 (514)
Q Consensus 447 vilv~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~-~ 511 (514)
+++|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+... .+..+++.++++++++ +
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 175 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHFC----PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFG 175 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHS----TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcE
Confidence 9999999999999999 67877776653 26999999999999764 1445678888988887 5
Q ss_pred cc
Q 010254 512 LY 513 (514)
Q Consensus 512 ~~ 513 (514)
|+
T Consensus 176 ~~ 177 (201)
T 2gco_A 176 YL 177 (201)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 205
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.82 E-value=4.6e-20 Score=169.65 Aligned_cols=142 Identities=17% Similarity=0.175 Sum_probs=113.8
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCc-EEEEEEecCChhHHHhhhcCccccccCc
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGT-KKTVVLREIPEEAVAKLLSNKDSLAACD 445 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~dt~g~~~~~~~~~~~~~~~~~d 445 (514)
...+||+++|++|||||||+|+|++..+...+.++.+..+........++. ..+.+|||+|.+.+..+. ...++.+|
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d 86 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLK--DVYYIGAS 86 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCC--HHHHTTCS
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHH--HHHhhcCC
Confidence 346899999999999999999999998887776777766665555554344 567799999998887655 56788999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++++|||++++.+++.+..|+..+...... +.|+++|+||+|+...+ +......++++.++++++
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGN---EAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYF 152 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCS---SSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEE
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCC---CCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEE
Confidence 999999999999999999999888765422 58999999999998764 567778888888888765
No 206
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.81 E-value=1.4e-19 Score=158.27 Aligned_cols=140 Identities=17% Similarity=0.235 Sum_probs=112.7
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.+||+++|++|||||||+++|++..+...+.++.+..+ ...+...+....+.+|||+|.+.+.... ..+++.+|+++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~--~~~~~~~~~~i 79 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMR--DQYMRTGEGFL 79 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHH--HHHHHHCSEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHH--HHhhccCCEEE
Confidence 47999999999999999999999988777666655433 3455555344556799999988776665 46788999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
+|||+++..+++.+..|+..+...... .+.|+++|+||+|+........+.++++++++++++
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 142 (166)
T 2ce2_X 80 CVFAINNTKSFEDIHQYREQIKRVKDS--DDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYI 142 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTC--SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCC--CCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEE
Confidence 999999999999999998887765422 269999999999998755667888899999988765
No 207
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.81 E-value=2.2e-20 Score=172.21 Aligned_cols=140 Identities=16% Similarity=0.207 Sum_probs=116.1
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+||+++|++|||||||+++|+.+.+...+.++.+.++....+...++...+.+|||+|++.+..+. ..+++++|+
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~ 90 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR--DGYYIQAQC 90 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCC--HHHHTTCCE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHH--HHHHhcCCE
Confidence 456899999999999999999988877777766777777777777777556677799999998887665 578899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||++++.+|+.+..|+..+.... +++|+++|+||+|+...+.. .+..++++.++++|+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~ 152 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKDRKVK-AKSIVFHRKKNLQYY 152 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS----TTCCEEEEEECTTSSSCSSC-GGGCCHHHHHTCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC----CCCCEEEEEECCcccccccc-HHHHHHHHHcCCEEE
Confidence 999999999999999999999988764 27999999999999765433 356678888887765
No 208
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.81 E-value=2.2e-19 Score=160.44 Aligned_cols=139 Identities=19% Similarity=0.259 Sum_probs=111.2
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|+++.+...+.++.+..+. ..+...+....+.+|||+|.+.+.... ..+++.+|++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~ 80 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLR--PLSYPQTDVS 80 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEE-EEEEETTEEEEEEEECCCCSGGGTTTG--GGGCTTCSEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeE-EEEEECCEEEEEEEEECCCCHhHHHHH--HHhccCCcEE
Confidence 3589999999999999999999998887777666665443 445555344556699999999887766 5688999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC-cc
Q 010254 448 VFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-VL 512 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~-~~ 512 (514)
++|||++++.+|+.+. .|+..+.... ++.|+++|+||+|+... .+..+++.++++.+++ ++
T Consensus 81 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (186)
T 1mh1_A 81 LICFSLVSPASFENVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 156 (186)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS----TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHhC----CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 9999999999999997 6888877654 26999999999999653 2446678889988886 55
Q ss_pred c
Q 010254 513 Y 513 (514)
Q Consensus 513 ~ 513 (514)
+
T Consensus 157 ~ 157 (186)
T 1mh1_A 157 L 157 (186)
T ss_dssp E
T ss_pred E
Confidence 4
No 209
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.2e-19 Score=164.24 Aligned_cols=143 Identities=17% Similarity=0.257 Sum_probs=113.2
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+||+++|++|||||||+++|++..+...+.++.+..+. ..+...+....+.+|||+|.+.+..+. ..+++.+|+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ 82 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQ--RLSISKGHA 82 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHH--HHHHHHCSE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHH--HHhhccCCE
Confidence 34589999999999999999999999887777666654443 344455344567799999998887766 567899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||++++.+|+.+..|+..+...... .++.|+++|+||+|+....+...++.++++.++++|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 148 (199)
T 2gf0_A 83 FILVFSVTSKQSLEELGPIYKLIVQIKGS-VEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFM 148 (199)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHSC-GGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEE
Confidence 99999999999999998887776654211 1268999999999998755667788889999888765
No 210
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.81 E-value=7.2e-20 Score=176.19 Aligned_cols=158 Identities=20% Similarity=0.209 Sum_probs=111.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCc-cch--------hhHHH
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSV-EDR--------GKLGE 82 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~-~~~--------~~~~~ 82 (514)
+..+|+|+|+||||||||+|+|++..+. +.+..+++|.. ..+..++..+.+|||||+. ... .....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~--i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKIS--ITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEE--ECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcc--ccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 4568999999999999999999998742 33334445532 2344557889999999997 322 22345
Q ss_pred hhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCc
Q 010254 83 ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSA 162 (514)
Q Consensus 83 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 162 (514)
+++.+|++++|+|+++ .+ .....+...+... +.|+++|+||+|+... + ....+....+.+.++ ...++++||
T Consensus 85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~~--~~P~ilvlNK~D~~~~-~-~~~~~~l~~l~~~~~-~~~~i~iSA 156 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR-WT--PDDEMVLNKLREG--KAPVILAVNKVDNVQE-K-ADLLPHLQFLASQMN-FLDIVPISA 156 (301)
T ss_dssp CCCCEEEEEEEEETTC-CC--HHHHHHHHHHHSS--SSCEEEEEESTTTCCC-H-HHHHHHHHHHHTTSC-CSEEEECCT
T ss_pred HHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHhc--CCCEEEEEECcccCcc-H-HHHHHHHHHHHHhcC-cCceEEEEC
Confidence 6889999999999876 33 3333345555544 7999999999999762 1 122223333433332 236899999
Q ss_pred cccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 163 LKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 163 ~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
+++. |+++|.+.|.+.++++
T Consensus 157 ~~g~------------~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 157 ETGL------------NVDTIAAIVRKHLPEA 176 (301)
T ss_dssp TTTT------------THHHHHHHHHTTCCBC
T ss_pred CCCC------------CHHHHHHHHHHhCCcC
Confidence 9999 9999999999988764
No 211
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.81 E-value=2e-19 Score=163.55 Aligned_cols=138 Identities=20% Similarity=0.217 Sum_probs=109.8
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+||+++|++|||||||+++|+++.+...+.++.+. .....+...+....+.+|||+|.+.+..+. ..+++.+|+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~ 104 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLR--PLSYPQTDV 104 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEECC-CEEEEEEEEECCSGGGTTTG--GGGCTTCSE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEECCEEEEEEEEECCCchhhHHHH--HHHhccCCE
Confidence 45689999999999999999999999887777665543 334556666455566699999999888776 578899999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-------------cchhhHHHHHHHcCCc
Q 010254 447 AVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-------------MAIQDSTRVFTFLVMV 511 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~~ 511 (514)
+++|||++++.+|+.+. .|+..+.... ++.|+++|+||+|+...+ +...++.++++.+++.
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 179 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 179 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC----SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCc
Confidence 99999999999999997 7888877764 279999999999987643 4456788888888863
No 212
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.81 E-value=3.1e-20 Score=165.54 Aligned_cols=140 Identities=19% Similarity=0.306 Sum_probs=100.1
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+||+++|++|||||||+++|++..+...+.++.+..+. ..+...+....+.+|||+|++.+...+ ..+++++|+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~ 82 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLR--PLSYRGADV 82 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTG--GGGGTTCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhH--HhhccCCCE
Confidence 34589999999999999999999998887766666554332 223333233455699999999888766 578899999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc-----------chhhHHHHHHHcCC-ccc
Q 010254 447 AVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM-----------AIQDSTRVFTFLVM-VLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~-~~~ 513 (514)
+++|||++++.+|+.+. .|+..+.... ++.|+++|+||+|+...+. ...++.++++.+++ +|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 158 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHYA----PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYI 158 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC----TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEE
Confidence 99999999999999997 6888887754 2699999999999976442 56778889998886 654
No 213
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.80 E-value=3.2e-19 Score=181.19 Aligned_cols=160 Identities=16% Similarity=0.180 Sum_probs=112.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccchh------------h
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRG------------K 79 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~------------~ 79 (514)
..++|+|+|+||||||||+|+|++.. ...++..+++|.. ..+..++..+.+|||||++.... .
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~--~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKE--RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST--TEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc--ccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 46999999999999999999999987 3344455666632 34455567899999999853321 1
Q ss_pred HHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc--cCcE
Q 010254 80 LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE--IETC 157 (514)
Q Consensus 80 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~ 157 (514)
...+++.+|++++|+|++++.+.++.. +...+... ++|+++|+||+|+.+. +....++....+.+.+.. ..++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~--i~~~l~~~--~~~~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQR--MAGLMERR--GRASVVVFNKWDLVVH-REKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHHHT--TCEEEEEEECGGGSTT-GGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECccCCCc-hhhHHHHHHHHHHHHhccCCCCcE
Confidence 235788999999999999877766532 56666655 8999999999999765 222233333344444432 2389
Q ss_pred EEcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 158 IECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 158 i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
+++||++|. |+++|.+.+.+.+..
T Consensus 332 ~~~SA~~g~------------gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 332 IFTSADKGW------------NIDRMIDAMNLAYAS 355 (439)
T ss_dssp EECBTTTTB------------SHHHHHHHHHHHHHH
T ss_pred EEEECCCCC------------CHHHHHHHHHHHHHh
Confidence 999999999 999999998876543
No 214
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=2.6e-19 Score=163.23 Aligned_cols=139 Identities=22% Similarity=0.266 Sum_probs=106.2
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|++..+...+.++.+..+.. .+..++....+.+|||+|++.+.... ..+++.+|++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~ 100 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLR--PLSYPDTDVI 100 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTG--GGGCTTCCEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHH--HhhcCCCCEE
Confidence 45899999999999999999999999887776776665543 35556344567799999998887665 5788999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc------------c-cchhhHHHHHHHcCC-cc
Q 010254 448 VFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDSF------------A-MAIQDSTRVFTFLVM-VL 512 (514)
Q Consensus 448 ilv~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~-~~~~~~~~~~~~~~~-~~ 512 (514)
++|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+... + +...++.++++.+++ +|
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 176 (207)
T 2fv8_A 101 LMCFSVDSPDSLENIPEKWVPEVKHFC----PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDY 176 (207)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS----TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEE
Confidence 999999999999999 67887777653 26999999999999764 1 445677888888876 44
Q ss_pred c
Q 010254 513 Y 513 (514)
Q Consensus 513 ~ 513 (514)
+
T Consensus 177 ~ 177 (207)
T 2fv8_A 177 L 177 (207)
T ss_dssp E
T ss_pred E
Confidence 3
No 215
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.80 E-value=5.9e-20 Score=164.19 Aligned_cols=136 Identities=11% Similarity=0.045 Sum_probs=97.7
Q ss_pred EEEEEeCCCCCChHHHHHHhhCC--CCCCCCCCCCCccEEEEEEEC---CCCcEEEEEEecCChhHHHhhhcCccccccC
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGR--PFSDNYTPTTDERYAVNVVDQ---PGGTKKTVVLREIPEEAVAKLLSNKDSLAAC 444 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~ 444 (514)
+||+++|++|||||||+++|++. .+...+.++.+.++....+.. .+......+|||+|+++|..+. +.+++++
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~ 80 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTH--PHFMTQR 80 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTS--HHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhh--HHHccCC
Confidence 79999999999999999999985 444455566666555444433 1134466799999999998765 5778899
Q ss_pred cEEEEEEeCCCh-hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccc----hhhHHHHHHHcCCc
Q 010254 445 DIAVFVHDSSDE-SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMA----IQDSTRVFTFLVMV 511 (514)
Q Consensus 445 d~vilv~D~~~~-~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~ 511 (514)
|++++|||++++ .+|+.+..|+..+.... ++.|+++|+||+|+...+.. .....+++++++++
T Consensus 81 ~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
T 2zej_A 81 ALYLAVYDLSKGQAEVDAMKPWLFNIKARA----SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFP 148 (184)
T ss_dssp EEEEEEEEGGGCHHHHHTHHHHHHHHHHHC----TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSC
T ss_pred cEEEEEEeCCcchhHHHHHHHHHHHHHhhC----CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCc
Confidence 999999999997 68999999998876653 26999999999999765422 34456677777775
No 216
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.80 E-value=4.1e-19 Score=181.59 Aligned_cols=167 Identities=16% Similarity=0.137 Sum_probs=114.2
Q ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHhcCC----CCCCCCCCCCCccccc---ceeCCeeEEEEEeCCCCccchhhHHH
Q 010254 10 GPGGKTGVRIVVCGEKGTGKSSLIVTAAADT----FPANVPPVLPPTRLPE---DFYPDRVPITIIDTPSSVEDRGKLGE 82 (514)
Q Consensus 10 ~~~~~~~~~I~ivG~~nvGKSsLin~l~~~~----~~~~~~~~~~~tt~~~---~~~~~~~~~~l~Dt~G~~~~~~~~~~ 82 (514)
....|..++|+++|++|+|||||+|+|++.. ..........++|+.. .+...+..+.+|||||++++...+..
T Consensus 13 ~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 13 PHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHH
T ss_pred hhhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHH
Confidence 3344678999999999999999999999876 2112222334455332 23345689999999999988888888
Q ss_pred hhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHH-hc-cCcEEEc
Q 010254 83 ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF-RE-IETCIEC 160 (514)
Q Consensus 83 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~~ 160 (514)
++..+|++|+|+|++++...+..+ ++..++.. ++|+++|+||+|+.+..+.....+.+..+.+.. +. ..+++++
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e--~l~~~~~~--~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v 168 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGE--HMLILDHF--NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI 168 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred HHhhCCEEEEEEecCCCccHHHHH--HHHHHHHc--CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence 999999999999998854433333 44455555 789999999999986422222223333444333 11 2389999
Q ss_pred CccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 161 SALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 161 Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
||++|. |+++|++.|.+.++
T Consensus 169 SA~~g~------------gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 169 SAKTGF------------GVDELKNLIITTLN 188 (482)
T ss_dssp CTTTCT------------THHHHHHHHHHHHH
T ss_pred ECcCCC------------CHHHHHHHHHHhhc
Confidence 999999 99999999988764
No 217
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.80 E-value=1e-18 Score=156.62 Aligned_cols=121 Identities=14% Similarity=0.230 Sum_probs=98.9
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCc
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 445 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d 445 (514)
.+..+||+++|++|||||||+++|++..+...+.++.+..+. .+.. +...+.+|||+|.+.+...+ ..+++.+|
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d 92 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITK--GNVTIKLWDIGGQPRFRSMW--ERYCRGVS 92 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEE--TTEEEEEEEECCSHHHHTTH--HHHHTTCS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEe--CCEEEEEEECCCCHhHHHHH--HHHHccCC
Confidence 455799999999999999999999999888766676665443 3332 45677799999999988776 57789999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
++++|||++++.+|+.+..|+..+...... .+.|+++|+||+|+...
T Consensus 93 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 93 AIVYMVDAADQEKIEASKNELHNLLDKPQL--QGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGG--TTCCEEEEEECTTSTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCccc--CCCCEEEEEECCCCccC
Confidence 999999999999999999999887664211 27999999999999763
No 218
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.79 E-value=1.2e-18 Score=175.03 Aligned_cols=166 Identities=17% Similarity=0.121 Sum_probs=115.3
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--C----------CCCCCccccc-----ce---eCCeeEEEEEeCC
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANV--P----------PVLPPTRLPE-----DF---YPDRVPITIIDTP 71 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~--~----------~~~~~tt~~~-----~~---~~~~~~~~l~Dt~ 71 (514)
..+..++|+++|++|||||||+|+|++....... . ......+... .. ......+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 3456799999999999999999999985432210 0 0000000000 00 1123789999999
Q ss_pred CCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHH
Q 010254 72 SSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF 151 (514)
Q Consensus 72 G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 151 (514)
|++++...+..++..+|++++|+|++++.+...... |+..+.... .+|+++|+||+|+.+... ..+..+++.+.+
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~-~~~~~~~~~-~~~iivviNK~Dl~~~~~---~~~~~~~i~~~l 158 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGIIG-VKNLIIVQNKVDVVSKEE---ALSQYRQIKQFT 158 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHH-HHHHHHHHT-CCCEEEEEECGGGSCHHH---HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHH-HHHHHHHcC-CCCEEEEEECccccchHH---HHHHHHHHHHHH
Confidence 999999988999999999999999998765555444 666666552 358999999999987521 112222333332
Q ss_pred hc----cCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 152 RE----IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 152 ~~----~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
.. ..+++++||++|. |+++|++.|.+.++..
T Consensus 159 ~~~~~~~~~ii~vSA~~g~------------gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 159 KGTWAENVPIIPVSALHKI------------NIDSLIEGIEEYIKTP 193 (403)
T ss_dssp TTSTTTTCCEEECBTTTTB------------SHHHHHHHHHHHSCCC
T ss_pred HhhCCCCCEEEEEECCCCc------------ChHHHHHHHHHhCCCC
Confidence 11 2279999999999 9999999999887654
No 219
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.79 E-value=1e-18 Score=158.10 Aligned_cols=123 Identities=22% Similarity=0.243 Sum_probs=96.5
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCC-CCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccC
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSD-NYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAAC 444 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~ 444 (514)
.....||+++|++|||||||+++|++..+.. .+.++.+ +....+. .....+.+|||+|++.+..++ ..+++.+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~--~~~~~~~--~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~ 87 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--YNVETFE--KGRVAFTVFDMGGAKKFRGLW--ETYYDNI 87 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS--EEEEEEE--ETTEEEEEEEECCSGGGGGGG--GGGCTTC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc--eeEEEEE--eCCEEEEEEECCCCHhHHHHH--HHHHhcC
Confidence 3456899999999999999999999999988 5656666 4444454 256778899999999988777 5788999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhcCC-----CCCCCCcEEEEEeCCCCccc
Q 010254 445 DIAVFVHDSSDESSWKRATELLVEVASYGE-----DTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 445 d~vilv~D~~~~~s~~~~~~~~~~~~~~~~-----~~~~~~p~ilv~nK~Dl~~~ 494 (514)
|++|+|||+++++||+.+..|+..+..... ....++|+++|+||+|+...
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 999999999999999999999888765411 00116899999999999875
No 220
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.79 E-value=1.3e-19 Score=176.38 Aligned_cols=155 Identities=17% Similarity=0.195 Sum_probs=112.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeCC-eeEEEEEeCCCCcc----chhhHHHh---hhc
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYPD-RVPITIIDTPSSVE----DRGKLGEE---LRR 86 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~~-~~~~~l~Dt~G~~~----~~~~~~~~---~~~ 86 (514)
+|+|+|.||||||||+|+|++.++.. ...+.+|... .+... ...+.||||||+.+ .......+ ++.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i---~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~ 236 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKI---ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER 236 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEE---SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCcc---ccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence 68999999999999999999876321 1122233211 22333 37899999999753 22233333 556
Q ss_pred cCEEEEEEeCCC---cccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEc
Q 010254 87 ADAVVLTYACDR---PETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIEC 160 (514)
Q Consensus 87 ad~ii~v~d~~~---~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (514)
+|++|+|+|+++ +.+++.+.. |...+..+. .++|+++|+||+|+... .+..+.+.+.+....++++|
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~-~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~------~e~~~~l~~~l~~~~~v~~i 309 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLT-INQELSEYNLRLTERPQIIVANKMDMPEA------AENLEAFKEKLTDDYPVFPI 309 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHH-HHHHHHHSCSSTTTSCBCBEEECTTSTTH------HHHHHHHHHHCCSCCCBCCC
T ss_pred ccEEEEEEECCcccccChHHHHHH-HHHHHHHhhhhhcCCCEEEEEECccCCCC------HHHHHHHHHHhhcCCCEEEE
Confidence 999999999998 777888775 888888764 37999999999999764 12344555555422378999
Q ss_pred CccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 161 SALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 161 Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
||+++. |+++|++.|.+.+...
T Consensus 310 SA~tg~------------gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 310 SAVTRE------------GLRELLFEVANQLENT 331 (342)
T ss_dssp SSCCSS------------TTHHHHHHHHHHHTSC
T ss_pred ECCCCc------------CHHHHHHHHHHHHhhC
Confidence 999999 9999999999888654
No 221
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.79 E-value=2e-18 Score=155.07 Aligned_cols=132 Identities=19% Similarity=0.228 Sum_probs=102.0
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCC-CCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCc
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRP-FSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 445 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d 445 (514)
...+||+++|++|||||||+++|++.. +...+.++.+ +....+.+. + ..+.+|||+|.+.+...+ ..+++.+|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~-~-~~~~l~Dt~G~~~~~~~~--~~~~~~~d 92 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSS-S-LSFTVFDMSGQGRYRNLW--EHYYKEGQ 92 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECS-S-CEEEEEEECCSTTTGGGG--GGGGGGCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEEC-C-EEEEEEECCCCHHHHHHH--HHHHhcCC
Confidence 446899999999999999999999988 4545545444 666677766 3 567799999999888776 57889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHH
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVF 505 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 505 (514)
++++|||++++.+|+.+..|+..+.........+.|+++|+||+|+... ....+..++.
T Consensus 93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~ 151 (190)
T 2h57_A 93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA-VTSVKVSQLL 151 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC-CCHHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC-CCHHHHHHHh
Confidence 9999999999999999999998887653211127999999999999763 2334444444
No 222
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.79 E-value=1.4e-18 Score=157.40 Aligned_cols=141 Identities=17% Similarity=0.243 Sum_probs=114.2
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|++..+...+.++.+.++....+.+.+......+||++|.+.+..+. ...++.++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~--~~~~~~~~~~ 81 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRIT--SAYYRGAVGA 81 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCC--HHHHTTCSEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhh--HHHHhcCCEE
Confidence 46899999999999999999999999988888888888887888887334456789999998876554 4667899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
++|||+++..+++.+..|+..+..... .+.|+++|+||+|+...+ +...++++++.+.++.++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~ 145 (199)
T 2f9l_A 82 LLVYDIAKHLTYENVERWLKELRDHAD---SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFI 145 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC---CCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEE
Confidence 999999999999999889887765432 268999999999997654 556778899998887764
No 223
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.78 E-value=4.9e-20 Score=183.98 Aligned_cols=156 Identities=19% Similarity=0.222 Sum_probs=107.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeCC-eeEEEEEeCCCCccchhh-------HH
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYPD-RVPITIIDTPSSVEDRGK-------LG 81 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~~-~~~~~l~Dt~G~~~~~~~-------~~ 81 (514)
....++|+|+|++|||||||+|+|++..+. .....+++|... .+... ..++.+|||||++++... ..
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~--~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVS--IVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC---------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCC--ccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHH
Confidence 456799999999999999999999998752 223344444322 12222 238999999999866432 45
Q ss_pred HhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcC
Q 010254 82 EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECS 161 (514)
Q Consensus 82 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 161 (514)
.++..+|++|+|+|+. .......|+..+... ++|+++|+||+|+... +.. +..+.+.+.++. +++++|
T Consensus 109 ~~l~~aD~vllVvD~~----~~~~~~~~l~~l~~~--~~piIvV~NK~Dl~~~-~~~---~~~~~l~~~~g~--~v~~vS 176 (423)
T 3qq5_A 109 RVFYRADCGILVTDSA----PTPYEDDVVNLFKEM--EIPFVVVVNKIDVLGE-KAE---ELKGLYESRYEA--KVLLVS 176 (423)
T ss_dssp HHHTSCSEEEEECSSS----CCHHHHHHHHHHHHT--TCCEEEECCCCTTTTC-CCT---HHHHHSSCCTTC--CCCCCS
T ss_pred HHHhcCCEEEEEEeCC----ChHHHHHHHHHHHhc--CCCEEEEEeCcCCCCc-cHH---HHHHHHHHHcCC--CEEEEE
Confidence 6789999999999982 222333488888887 8999999999999876 221 222333333332 899999
Q ss_pred ccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 162 ALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 162 a~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
|++|. |++++++.|.+.+++.
T Consensus 177 Aktg~------------gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 177 ALQKK------------GFDDIGKTISEILPGD 197 (423)
T ss_dssp SCCTT------------STTTHHHHHHHHSCCC
T ss_pred CCCCC------------CHHHHHHHHHHhhhhh
Confidence 99999 9999999999988654
No 224
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.78 E-value=5.9e-18 Score=151.32 Aligned_cols=118 Identities=19% Similarity=0.284 Sum_probs=96.8
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|++.. ...+.++.+ +....+... ...+.+|||+|.+.+...+ ...++++|++
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~--~~~~~~~d~i 89 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHR--GFKLNIWDVGGQKSLRSYW--RNYFESTDGL 89 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEET--TEEEEEEEECCSHHHHTTG--GGGCTTCSEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEEC--CEEEEEEECCCCHhHHHHH--HHHhcCCCEE
Confidence 45899999999999999999999988 445545555 445555554 4677799999999998776 6788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
++|||++++.||+.+..|+..+...... .+.|+++|+||+|+...
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 90 IWVVDSADRQRMQDCQRELQSLLVEERL--AGATLLIFANKQDLPGA 134 (186)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGG--TTCEEEEEEECTTSTTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhChhc--CCCcEEEEEeCccCCCC
Confidence 9999999999999999999887664211 26999999999999764
No 225
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.78 E-value=1.4e-19 Score=163.47 Aligned_cols=139 Identities=19% Similarity=0.136 Sum_probs=102.8
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCC-----------CCCccEEEEEE-ECCCCcEEEEEEecCChhHHHhh
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTP-----------TTDERYAVNVV-DQPGGTKKTVVLREIPEEAVAKL 434 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~i~dt~g~~~~~~~ 434 (514)
...+||+++|++|||||||++.+.+. +...+.+ +.+.++....+ ...+....+.+|||+|++.+..+
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 35689999999999999999766554 4433322 22222222222 33434456779999999888877
Q ss_pred hcCccccccCcEEEEEEeCC------ChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHc
Q 010254 435 LSNKDSLAACDIAVFVHDSS------DESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFL 508 (514)
Q Consensus 435 ~~~~~~~~~~d~vilv~D~~------~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 508 (514)
+ ..+++++|++|+|||++ +.++|+.+..|+..+.... .+.|+++|+||+|+... +..++++++++++
T Consensus 91 ~--~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~----~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~ 163 (198)
T 3t1o_A 91 R--KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTL----DDVPIVIQVNKRDLPDA-LPVEMVRAVVDPE 163 (198)
T ss_dssp H--HHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCT----TSSCEEEEEECTTSTTC-CCHHHHHHHHCTT
T ss_pred H--HHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcccc----CCCCEEEEEEchhcccc-cCHHHHHHHHHhc
Confidence 6 57889999999999999 5677888888888773322 37999999999999763 6778888999988
Q ss_pred CC-ccc
Q 010254 509 VM-VLY 513 (514)
Q Consensus 509 ~~-~~~ 513 (514)
++ +|+
T Consensus 164 ~~~~~~ 169 (198)
T 3t1o_A 164 GKFPVL 169 (198)
T ss_dssp CCSCEE
T ss_pred CCceEE
Confidence 88 664
No 226
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.77 E-value=2.4e-18 Score=155.58 Aligned_cols=129 Identities=20% Similarity=0.213 Sum_probs=95.0
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|.++.+.. +.++.+.. ...+.++ + ..+.+|||+|++.+..++ ..+++.+|++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~--~~~~~~~-~-~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~ 96 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT--SEELTIA-G-MTFTTFDLGGHIQARRVW--KNYLPAINGI 96 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEET-T-EEEEEEEECC----CCGG--GGGGGGCSEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCce--eEEEEEC-C-EEEEEEECCCcHhhHHHH--HHHHhcCCEE
Confidence 34799999999999999999999988754 44555543 3455555 3 677799999999888776 5788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHH
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFT 506 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 506 (514)
++|||++++++|+.+..|+..+...... .+.|+++|+||+|+.. .+..++..++++
T Consensus 97 i~v~D~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~~~~~~~~~~~ 152 (198)
T 1f6b_A 97 VFLVDCADHERLLESKEELDSLMTDETI--ANVPILILGNKIDRPE-AISEERLREMFG 152 (198)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGG--TTSCEEEEEECTTSTT-CCCHHHHHHHHT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCccc--CCCcEEEEEECCCccc-cCCHHHHHHHhC
Confidence 9999999999999999999888764221 2799999999999976 445555666654
No 227
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.77 E-value=1.3e-18 Score=168.12 Aligned_cols=142 Identities=8% Similarity=0.037 Sum_probs=103.8
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCC-CCCCCccEEEEEEECCCCcEEEEEEecCChhHH-----HhhhcCcccc
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV-----AKLLSNKDSL 441 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~-----~~~~~~~~~~ 441 (514)
..+||+++|++|||||||+++|+++...... .+..|.......+.+. +...+.+|||+|++.+ .... ...+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~--~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFL-GNMTLNLWDCGGQDVFMENYFTKQK--DHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEET-TTEEEEEEEECCSHHHHHHHHTTTH--HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeC-CceEEEEEECCCcHHHhhhhhhhHH--HHHh
Confidence 3589999999999999999999988543321 1233333444445555 5678889999999887 3333 5677
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc--cc-----cchhhHHHHHHHcC---Cc
Q 010254 442 AACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS--FA-----MAIQDSTRVFTFLV---MV 511 (514)
Q Consensus 442 ~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~--~~-----~~~~~~~~~~~~~~---~~ 511 (514)
+++|++|+|||++++.+|+.+..|...+...... .+++|+++|+||+|+.. .+ +...++.++++.+| ++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~-~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~ 157 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY-SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLI 157 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh-CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeE
Confidence 8999999999999999999997775444332100 13799999999999986 33 34578889999987 45
Q ss_pred cc
Q 010254 512 LY 513 (514)
Q Consensus 512 ~~ 513 (514)
|+
T Consensus 158 ~~ 159 (307)
T 3r7w_A 158 GF 159 (307)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 228
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.77 E-value=2.4e-18 Score=150.45 Aligned_cols=116 Identities=22% Similarity=0.253 Sum_probs=93.8
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEE
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVF 449 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vil 449 (514)
+||+++|++|||||||+++|+++.+.. +.|+.+ +....+... ...+.+|||+|++.+..++ ..+++++|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~i~ 73 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYK--NISFTVWDVGGQDKIRPLW--RHYFQNTQGLIF 73 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECS--SCEEEEEECCCCGGGHHHH--HHHTTTCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEEC--CEEEEEEEcCCChhhHHHH--HHHhccCCEEEE
Confidence 589999999999999999999888764 345555 334455543 4567799999999888776 567899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 450 VHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 450 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
|||+++++||+.+..|+..+...... ++.|+++|+||+|+...
T Consensus 74 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 74 VVDSNDRERVNEAREELMRMLAEDEL--RDAVLLVFANKQDLPNA 116 (164)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGG--TTCEEEEEEECTTSTTC
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhh--cCCeEEEEEECcCCcCC
Confidence 99999999999999999887654211 26999999999999763
No 229
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.77 E-value=2.8e-18 Score=152.79 Aligned_cols=119 Identities=17% Similarity=0.193 Sum_probs=94.5
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCc
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACD 445 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d 445 (514)
....+||+++|++|||||||+++|++.++ ..+.++.+... ..+.+. ...+.+|||+|.+.+...+ ..+++.+|
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~--~~~~~~~d 90 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSSW--NTYYTNTE 90 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEET--TEEEEEEEESSSGGGTCGG--GGGGTTCC
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEEC--CEEEEEEECCCCHhHHHHH--HHHhccCC
Confidence 34568999999999999999999999988 33445555433 344444 3677799999999888766 67889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
++++|||++++.+|+.+..|+..+...... .+.|+++|+||+|+..
T Consensus 91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTREELYKMLAHEDL--RKAGLLIFANKQDVKE 136 (181)
T ss_dssp EEEEEEETTCTTTHHHHHHHHHHHHTCGGG--TTCEEEEEEECTTSTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhh--CCCeEEEEEECCCccc
Confidence 999999999999999999999887764211 2799999999999976
No 230
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.77 E-value=3.7e-18 Score=172.71 Aligned_cols=154 Identities=18% Similarity=0.132 Sum_probs=103.9
Q ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------------------------CCCCCCCccccc---cee
Q 010254 11 PGGKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN----------------------------VPPVLPPTRLPE---DFY 59 (514)
Q Consensus 11 ~~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~----------------------------~~~~~~~tt~~~---~~~ 59 (514)
...+..++|+++|++|+|||||+|+|++..-... ......++|+.. .+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 3446779999999999999999999976431000 000113444332 344
Q ss_pred CCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCccc-------HHHHHHHHHHHHHhcCCCCc-EEEEEecccC
Q 010254 60 PDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPET-------LDELSTFWLPELRRLEVKVP-VIVVGCKLDL 131 (514)
Q Consensus 60 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s-------~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl 131 (514)
..+..+.||||||++++...+..+++.+|++|+|+|++++.. .+..+ .+..+... ++| +|+|+||+|+
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e--~l~~~~~~--~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE--HAMLAKTA--GVKHLIVLINKMDD 167 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHH--HHHHHHHc--CCCeEEEEeecCCC
Confidence 567899999999999998888889999999999999987642 12211 33344444 677 9999999999
Q ss_pred cccc----cchhHhhhhHHHHHHHhc----cCcEEEcCccccccc
Q 010254 132 RDEN----QQVSLEQVMMPIMQQFRE----IETCIECSALKQIQV 168 (514)
Q Consensus 132 ~~~~----~~~~~~~~~~~~~~~~~~----~~~~i~~Sa~~~~~~ 168 (514)
.... +.....+.+..+.+.++. ..+++++||++|.|+
T Consensus 168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni 212 (439)
T 3j2k_7 168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANL 212 (439)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccc
Confidence 6421 112222333444444442 126999999999955
No 231
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.77 E-value=7.2e-18 Score=148.37 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=95.6
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|+++.+.. +.++.+ +....+.+. ...+.+|||+|.+.+...+ ..+++.+|++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~--~~~~~~~d~i 78 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYK--NLKFQVWDLGGLTSIRPYW--RCYYSNTDAV 78 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEET--TEEEEEEEECCCGGGGGGG--GGGCTTCSEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEEC--CEEEEEEECCCChhhhHHH--HHHhccCCEE
Confidence 45899999999999999999999888753 335444 444555554 4677799999999888776 6788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
++|||++++.+|+.+..|+..+...... .+.|+++|+||+|+...
T Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 79 IYVVDSCDRDRIGISKSELVAMLEEEEL--RKAILVVFANKQDMEQA 123 (171)
T ss_dssp EEEEETTCCTTHHHHHHHHHHHHTCGGG--TTCEEEEEEECTTSTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhh--CCCEEEEEEECCCCcCC
Confidence 9999999999999999998887664211 27999999999999764
No 232
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.77 E-value=3.7e-18 Score=159.62 Aligned_cols=163 Identities=17% Similarity=0.147 Sum_probs=103.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc--cccceeCCeeEEEEEeCCCCcc--------chhhHHHh
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR--LPEDFYPDRVPITIIDTPSSVE--------DRGKLGEE 83 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt--~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~ 83 (514)
+..++|+|+|.+|||||||+|+|++.++.....+..+.|. ....+...+..+.||||||+.. ....+..+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 5679999999999999999999999886443222222222 2234445678999999999843 22223333
Q ss_pred h----hccCEEEEEEeCCCcccHHHHHHHHHHHHHhcC----CCCcEEEEEecccCcccccchhHh----hhhHHHHHHH
Q 010254 84 L----RRADAVVLTYACDRPETLDELSTFWLPELRRLE----VKVPVIVVGCKLDLRDENQQVSLE----QVMMPIMQQF 151 (514)
Q Consensus 84 ~----~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~----~~~pvilv~NK~Dl~~~~~~~~~~----~~~~~~~~~~ 151 (514)
+ ..+|++|+|+|++. .+. .+..++..+.... .+.|+|||+||+|+.......... +.+..+.+.+
T Consensus 99 ~~~~~~~~d~il~V~d~~~-~~~--~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGR-FTA--QDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHTTCCSEEEEEEETTB-CCH--HHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCCEEEEEEeCCC-CCH--HHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHc
Confidence 3 89999999999874 222 2222455554431 258999999999997642111111 2345566666
Q ss_pred hccCcEEEcCccc-----cccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 152 REIETCIECSALK-----QIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 152 ~~~~~~i~~Sa~~-----~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
+. .++.+++.. +. ++++|++.|.+.+++
T Consensus 176 g~--~~~~~~~~~~~~~~~~------------~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 176 GG--RVCAFDNRATGREQEA------------QVEQLLGMVEGLVLE 208 (247)
T ss_dssp TT--CEEECCTTCCHHHHHH------------HHHHHHHHHHHHHHH
T ss_pred CC--eEEEEeCCCCccccHH------------HHHHHHHHHHHHHHH
Confidence 54 455555443 34 999999999988874
No 233
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.77 E-value=1.7e-18 Score=163.65 Aligned_cols=164 Identities=14% Similarity=0.111 Sum_probs=104.7
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-cccc---cceeCCeeEEEEEeCCCCccchh---------
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPP-TRLP---EDFYPDRVPITIIDTPSSVEDRG--------- 78 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~-tt~~---~~~~~~~~~~~l~Dt~G~~~~~~--------- 78 (514)
.....++|+|+|++|||||||+|+|++...... ...+. +|.. ..+...+..+.||||||+..+..
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFES--KLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCC--CTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCccc--CCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHH
Confidence 345679999999999999999999999873222 11222 3322 23445678899999999875532
Q ss_pred --hHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcC---CCCcEEEEEe-cccCcccccchh-Hh----hhhHHH
Q 010254 79 --KLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLE---VKVPVIVVGC-KLDLRDENQQVS-LE----QVMMPI 147 (514)
Q Consensus 79 --~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~N-K~Dl~~~~~~~~-~~----~~~~~~ 147 (514)
....+++.+|++|+|+|++. +......+...+.+.. ...|+++|+| |+|+... .... .. +....+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~---~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~ 171 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGR---YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKL 171 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTC---CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCC---CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHH
Confidence 12236788999999999985 2222222444444431 1357777777 9999754 1111 00 112334
Q ss_pred HHHHhc----cCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 148 MQQFRE----IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 148 ~~~~~~----~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
...++. +.+ +++||+++. |+++|++.|.+.++..
T Consensus 172 ~~~~~~~~~~~~~-~~~SA~~~~------------gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 172 VAACGGRICAFNN-RAEGSNQDD------------QVKELMDCIEDLLMEK 209 (260)
T ss_dssp HHHTTTCEEECCT-TCCHHHHHH------------HHHHHHHHHHHHHHHT
T ss_pred HHHhCCeEEEecC-cccccccHH------------HHHHHHHHHHHHHHhC
Confidence 555442 112 789999999 9999999999887653
No 234
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.77 E-value=3e-18 Score=152.57 Aligned_cols=119 Identities=24% Similarity=0.323 Sum_probs=95.3
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+||+++|++|||||||+++|.+..+.. +.++.+ +....+..+ .....+|||+|++.+...+ ..+++.+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-~~~t~g--~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~ 86 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQG--FNIKSVQSQ--GFKLNVWDIGGQRKIRPYW--RSYFENTDI 86 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETT--EEEEEEEET--TEEEEEEECSSCGGGHHHH--HHHHTTCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc-ccCcCC--eEEEEEEEC--CEEEEEEECCCCHHHHHHH--HHHhCCCCE
Confidence 456899999999999999999999987643 334544 444555554 4667799999999888776 577899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
+++|||++++++|+.+..|+..+...... .+.|+++|+||+|+...
T Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 87 LIYVIDSADRKRFEETGQELTELLEEEKL--SCVPVLIFANKQDLLTA 132 (181)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHTTCGGG--TTCCEEEEEECTTSTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHhChhh--cCCCEEEEEECcCcccC
Confidence 99999999999999999998887554211 26999999999999764
No 235
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.77 E-value=2.7e-18 Score=154.27 Aligned_cols=142 Identities=17% Similarity=0.220 Sum_probs=116.9
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++......+||++|.+++..+. ...++.+++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~--~~~~~~~~~ 104 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT--SAYYRGAVG 104 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCC--HHHHTTCCE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhh--HHHhhcCCE
Confidence 456899999999999999999999999988888888888888888887333445689999988776554 466788999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
+++|||+++..+|+.+..|+..+..... .+.|+++|+||+|+...+ +...++++++++.++.++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~l 169 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHAD---SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFI 169 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC---TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 9999999999999999889877765432 268999999999997654 567788899998887764
No 236
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.76 E-value=5.1e-18 Score=152.38 Aligned_cols=126 Identities=20% Similarity=0.205 Sum_probs=98.9
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
.+||+++|++|||||||+++|.++.+.. +.++.+. ....+.+. + ..+.+|||+|++.+..++ ..+++.+|+++
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~--~~~~~~~~-~-~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~i 95 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHP--TSEELAIG-N-IKFTTFDLGGHIQARRLW--KDYFPEVNGIV 95 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSC--EEEEEEET-T-EEEEEEECCCSGGGTTSG--GGGCTTCCEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCC--CeEEEEEC-C-EEEEEEECCCCHHHHHHH--HHHHhcCCEEE
Confidence 4699999999999999999999988764 3355554 34556665 3 677799999999887765 57889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHH
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRV 504 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 504 (514)
+|||++++.||+.+..|+..+...... .+.|+++|+||+|+.. .+..++..++
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~~~~~~~~~ 148 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAEL--KDVPFVILGNKIDAPN-AVSEAELRSA 148 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGG--TTCCEEEEEECTTSTT-CCCHHHHHHH
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhh--cCCCEEEEEECCCCcC-CCCHHHHHHH
Confidence 999999999999999999888654221 2799999999999976 3344444444
No 237
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.76 E-value=5.7e-18 Score=167.28 Aligned_cols=157 Identities=22% Similarity=0.222 Sum_probs=110.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeCCeeEEEEEeCCCCccch---------hhHH
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYPDRVPITIIDTPSSVEDR---------GKLG 81 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~~~~~~~l~Dt~G~~~~~---------~~~~ 81 (514)
...++|+++|.+|||||||+|+|++..+. ....+.+|... .+..++..+.+|||||+.... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 241 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE---IASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAIL 241 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE---EECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc---cCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHH
Confidence 46789999999999999999999997732 11223333222 222346789999999985432 1112
Q ss_pred HhhhccCEEEEEEeCCCcc--cHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEE
Q 010254 82 EELRRADAVVLTYACDRPE--TLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIE 159 (514)
Q Consensus 82 ~~~~~ad~ii~v~d~~~~~--s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (514)
.....+|++++|+|++++. +++.... |+..+.....++|+++|+||+|+... . ..+ ....++...+. ++++
T Consensus 242 ~~~~~ad~illV~D~s~~~~~~~~~~~~-~~~~i~~~~~~~piilV~NK~Dl~~~-~--~~~-~~~~~~~~~~~--~~~~ 314 (357)
T 2e87_A 242 ALRYLGNLIIYIFDPSEHCGFPLEEQIH-LFEEVHGEFKDLPFLVVINKIDVADE-E--NIK-RLEKFVKEKGL--NPIK 314 (357)
T ss_dssp GGGGTCSEEEEEECTTCTTSSCHHHHHH-HHHHHHHHTTTSCEEEEECCTTTCCH-H--HHH-HHHHHHHHTTC--CCEE
T ss_pred HHHhcCCEEEEEEeCCccccCCHHHHHH-HHHHHHHhcCCCCEEEEEECcccCCh-H--HHH-HHHHHHHhcCC--CeEE
Confidence 2345699999999998766 5666554 88777765447999999999999765 1 111 12233333332 7999
Q ss_pred cCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 160 CSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 160 ~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|||++|. |+++|++.|.+.+.
T Consensus 315 iSA~~g~------------gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 315 ISALKGT------------GIDLVKEEIIKTLR 335 (357)
T ss_dssp CBTTTTB------------THHHHHHHHHHHHH
T ss_pred EeCCCCc------------CHHHHHHHHHHHHH
Confidence 9999999 99999999988764
No 238
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=2.6e-18 Score=153.86 Aligned_cols=118 Identities=18% Similarity=0.218 Sum_probs=92.2
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|++|||||||+++|+++.+. .+.++.+.. ...+.+. ...+.+|||+|.+++...+ ..+++++|+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~ 86 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVIN--NTRFLMWDIGGQESLRSSW--NTYYTNTEF 86 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEET--TEEEEEEECCC----CGGG--HHHHTTCCE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEEC--CEEEEEEECCCCHhHHHHH--HHHhcCCCE
Confidence 34589999999999999999999998887 444555533 3344444 3677899999999888766 578899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
+++|||+++++||+.+..|+..+...... .+.|+++|+||+|+..
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 87 VIVVVDSTDRERISVTREELYKMLAHEDL--RKAGLLIFANKQDVKE 131 (187)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTSGGG--TTCEEEEEEECTTSTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhchhh--CCCeEEEEEECCCCcC
Confidence 99999999999999999999888765211 2799999999999976
No 239
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2e-18 Score=155.41 Aligned_cols=116 Identities=21% Similarity=0.336 Sum_probs=84.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhc----cCE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRR----ADA 89 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~----ad~ 89 (514)
...++|+|+|++|||||||+|+|++..+.....+..++++... ....+.+|||||.+.+...+..++.. +|+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 121 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG 121 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECCCCchHHHHHHHHHHhhcccCCE
Confidence 5679999999999999999999999886554433334433222 56789999999998887766666665 999
Q ss_pred EEEEEeCC-CcccHHHHHHHHHHHHHh-----cCCCCcEEEEEecccCccc
Q 010254 90 VVLTYACD-RPETLDELSTFWLPELRR-----LEVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 90 ii~v~d~~-~~~s~~~~~~~~~~~l~~-----~~~~~pvilv~NK~Dl~~~ 134 (514)
+++|+|++ ++.++..+.. |+..+.. ..++.|+++|+||+|+...
T Consensus 122 ~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 122 LIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp EEEEEETTCCHHHHHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred EEEEEECCCCchhHHHHHH-HHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 99999999 7888877765 4444332 2247999999999999876
No 240
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.76 E-value=5.9e-18 Score=170.14 Aligned_cols=178 Identities=14% Similarity=0.143 Sum_probs=119.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcC--------CCCCC--CCC----CCCCcccc---cceeCCeeEEEEEeCCCCcc
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAAD--------TFPAN--VPP----VLPPTRLP---EDFYPDRVPITIIDTPSSVE 75 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~--------~~~~~--~~~----~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~ 75 (514)
.+..++|+++|++|+|||||+|+|++. .+... ... ...+.|+. ..+...+..+.||||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 456799999999999999999999973 11000 000 01222322 23455678899999999999
Q ss_pred chhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCcccc-cchhHhhhhHHHHHHHhc
Q 010254 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLDLRDEN-QQVSLEQVMMPIMQQFRE 153 (514)
Q Consensus 76 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 153 (514)
+...+..++..+|++|+|+|++++...+... |+..+... ++| +++|+||+|+..+. ......+.+..+.+.++.
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~--~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQTRE--HILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHHHH--HHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 9888888999999999999999876554433 66666665 788 89999999998531 111122334455555542
Q ss_pred ---cCcEEEcCccccccc-eecCCC---CC--hhhHHHHHHHHHHHhcCc
Q 010254 154 ---IETCIECSALKQIQV-KCFNSP---LQ--PSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 154 ---~~~~i~~Sa~~~~~~-~~f~~~---l~--~~~i~~L~~~i~~~~~~~ 194 (514)
..+++++||++|.|+ +.-... .. ..++++|++.|.+.+|..
T Consensus 164 ~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 164 PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP 213 (405)
T ss_dssp CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence 138999999999853 100000 00 013889999998888744
No 241
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.76 E-value=3.9e-18 Score=153.44 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=91.1
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|++|||||||+++|+++.+.. +.++.+ +....+.. +...+.+|||+|.+.+...+ ...++.+|+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~ 99 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNICFTVWDVGGQDKIRPLW--RHYFQNTQG 99 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEE--TTEEEEEEECC-----CTTH--HHHHHTCCE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEE--CCEEEEEEECCCCHhHHHHH--HHHhccCCE
Confidence 456899999999999999999999988763 334444 44455554 34677799999998887766 567899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
+++|||++++++|+.+..|+..+...... .+.|+++|+||+|+...
T Consensus 100 iilv~D~~~~~s~~~~~~~l~~~~~~~~~--~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 100 LIFVVDSNDRERVQESADELQKMLQEDEL--RDAVLLVFANKQDMPNA 145 (192)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGG--TTCEEEEEEECTTSTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHhccccc--CCCeEEEEEECCCCCCC
Confidence 99999999999999999999887654221 26999999999999763
No 242
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.76 E-value=6.4e-18 Score=166.15 Aligned_cols=166 Identities=17% Similarity=0.165 Sum_probs=104.1
Q ss_pred CCCCceeE-EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccc--h------h
Q 010254 11 PGGKTGVR-IVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVED--R------G 78 (514)
Q Consensus 11 ~~~~~~~~-I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~--~------~ 78 (514)
...+.+++ |+|+|++|||||||+|+|++..+ .+...+++|.. ..+...+.++.+|||+|+... . .
T Consensus 173 ~r~~~~~~~V~lvG~~naGKSTLln~L~~~~~---~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~ 249 (364)
T 2qtf_A 173 SNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQ---KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFF 249 (364)
T ss_dssp ------CCEEEEECBTTSSHHHHHHHHHCC--------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHH
T ss_pred hhhhcCCcEEEEECCCCCCHHHHHHHHHCCCc---cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHH
Confidence 33455677 99999999999999999999874 22223334422 234444578999999997321 1 1
Q ss_pred hHHHhhhccCEEEEEEeCCCcc--cHHHHHHHHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHH-hcc
Q 010254 79 KLGEELRRADAVVLTYACDRPE--TLDELSTFWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQF-REI 154 (514)
Q Consensus 79 ~~~~~~~~ad~ii~v~d~~~~~--s~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~ 154 (514)
.....+..+|++++|+|++++. ...... .|...+.... .++|+++|+||+|+.+. ......+....+...+ ...
T Consensus 250 ~tl~~~~~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l~~~~~p~ilV~NK~Dl~~~-~~~~~~~~~~~l~~~l~~~~ 327 (364)
T 2qtf_A 250 VTLSEAKYSDALILVIDSTFSENLLIETLQ-SSFEILREIGVSGKPILVTLNKIDKING-DLYKKLDLVEKLSKELYSPI 327 (364)
T ss_dssp HHHHGGGGSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHHTCCSCCEEEEEECGGGCCS-CHHHHHHHHHHHHHHHCSCE
T ss_pred HHHHHHHhCCEEEEEEECCCCcchHHHHHH-HHHHHHHHhCcCCCCEEEEEECCCCCCc-hHHHHHHHHHHHHHHhcCCC
Confidence 1234578999999999998765 333333 2556665543 47899999999999764 1111111222333444 211
Q ss_pred CcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 155 ETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 155 ~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
.+++++||+++. |+++|++.|.+.+..
T Consensus 328 ~~~~~~SA~~g~------------gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 328 FDVIPISALKRT------------NLELLRDKIYQLATQ 354 (364)
T ss_dssp EEEEECBTTTTB------------SHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCc------------CHHHHHHHHHHHhcc
Confidence 267999999999 999999999887654
No 243
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.75 E-value=1.1e-17 Score=168.26 Aligned_cols=166 Identities=19% Similarity=0.166 Sum_probs=103.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccccee-------------------C-------CeeEEEE
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFY-------------------P-------DRVPITI 67 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~-------------------~-------~~~~~~l 67 (514)
+..++|+++|++++|||||+++|++...........++.|+...+. . ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 3469999999999999999999997542222222223444332211 0 1278999
Q ss_pred EeCCCCccchhhHHHhhhccCEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHH
Q 010254 68 IDTPSSVEDRGKLGEELRRADAVVLTYACDRPE-TLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMP 146 (514)
Q Consensus 68 ~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~ 146 (514)
|||||++++...+...+..+|++|+|+|++++. ..+..+ .+..++... ..|+++|+||+|+.+..+.....+.+..
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e--~l~~~~~l~-~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKE--HLMALEILG-IDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHH--HHHHHHHTT-CCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHH--HHHHHHHcC-CCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 999999888776667778899999999999654 222222 223334331 3589999999999875221122222333
Q ss_pred HHHHHh-ccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 147 IMQQFR-EIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 147 ~~~~~~-~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
+.+.+. ...+++++||++|. |+++|++.|.+.++..
T Consensus 163 ~l~~~~~~~~~~i~vSA~~g~------------gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 163 FVKGTIAENAPIIPISAHHEA------------NIDVLLKAIQDFIPTP 199 (408)
T ss_dssp HHTTSTTTTCCEEEC------------------CHHHHHHHHHHHSCCC
T ss_pred HHhhcCCCCCeEEEeeCCCCC------------CHHHHHHHHHHhCCCC
Confidence 333221 12379999999999 9999999999887653
No 244
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.61 E-value=6.9e-20 Score=166.64 Aligned_cols=140 Identities=19% Similarity=0.246 Sum_probs=108.6
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+||+++|++|||||||+++|++..+...+.++.+..+. ..+...+....+.+|||+|++.+.... ..+++++|+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~ 104 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLR--PLSYPQTDV 104 (204)
Confidence 45689999999999999999999998887766565554442 344444344455699999999888766 568899999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC-c
Q 010254 447 AVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-V 511 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~-~ 511 (514)
+++|||++++.+|+.+. .|+..+.... ++.|+++|+||+|+... .+...++.++++.+++ +
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~~----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 180 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 180 (204)
Confidence 99999999999999987 7877776543 26999999999999754 2345667778877776 5
Q ss_pred cc
Q 010254 512 LY 513 (514)
Q Consensus 512 ~~ 513 (514)
|+
T Consensus 181 ~~ 182 (204)
T 3th5_A 181 YL 182 (204)
Confidence 54
No 245
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.75 E-value=1.1e-19 Score=186.08 Aligned_cols=158 Identities=14% Similarity=0.151 Sum_probs=112.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeC-CeeEEEEEeCCCCccchhhHHHhhhccCEE
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYP-DRVPITIIDTPSSVEDRGKLGEELRRADAV 90 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~i 90 (514)
+..+|+|+|++|+|||||+|+|.+..+.... .+++|... .+.. .+.++.||||||++.+...+..+++.+|++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~---~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~v 79 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAME---AGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIV 79 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSS---SCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccc---CCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEE
Confidence 4678999999999999999999987653332 23444222 2222 456899999999999988888889999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHH---HHHHhccCcEEEcCcccccc
Q 010254 91 VLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPI---MQQFREIETCIECSALKQIQ 167 (514)
Q Consensus 91 i~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~Sa~~~~~ 167 (514)
|+|+|++++...+... ++..+... ++|+++|+||+|+.+.. ..........+ ...++...+++++||++|.
T Consensus 80 ILVVDa~dg~~~qt~e--~l~~~~~~--~vPiIVViNKiDl~~~~-~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~- 153 (537)
T 3izy_P 80 ILVVAADDGVMKQTVE--SIQHAKDA--HVPIVLAINKCDKAEAD-PEKVKKELLAYDVVCEDYGGDVQAVHVSALTGE- 153 (537)
T ss_dssp EEECBSSSCCCHHHHH--HHHHHHTT--TCCEEECCBSGGGTTTS-CCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSC-
T ss_pred EEEEECCCCccHHHHH--HHHHHHHc--CCcEEEEEecccccccc-hHHHHHHHHhhhhhHHhcCCCceEEEEECCCCC-
Confidence 9999999877766654 45555555 78999999999997541 11111111110 1111111278999999999
Q ss_pred ceecCCCCChhhHHHHHHHHHHHhc
Q 010254 168 VKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 168 ~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|+++|++.|...++
T Consensus 154 -----------GI~eLle~I~~l~~ 167 (537)
T 3izy_P 154 -----------NMMALAEATIALAE 167 (537)
T ss_dssp -----------SSHHHHHHHHHHHT
T ss_pred -----------CchhHHHHHHHhhh
Confidence 99999999987654
No 246
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.75 E-value=2.4e-17 Score=165.96 Aligned_cols=168 Identities=15% Similarity=0.156 Sum_probs=111.0
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccccee----------------------C----CeeEE
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFY----------------------P----DRVPI 65 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~----------------------~----~~~~~ 65 (514)
.....++|+++|++|+|||||+++|++...........++.|+...+. . ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 345679999999999999999999997542111111223444432211 0 12789
Q ss_pred EEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhh
Q 010254 66 TIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPE-TLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVM 144 (514)
Q Consensus 66 ~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~ 144 (514)
.||||||++++...+...+..+|++|+|+|++++. ..+..+ .+..+.... ..|+++|+||+|+.+..+.....+.+
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e--~l~~~~~~~-~~~iivviNK~Dl~~~~~~~~~~~~i 162 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE--HLMALQIIG-QKNIIIAQNKIELVDKEKALENYRQI 162 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHH--HHHHHHHHT-CCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHH--HHHHHHHcC-CCcEEEEEECccCCCHHHHHHHHHHH
Confidence 99999999888777777888999999999999753 222222 222333331 35899999999998752111111122
Q ss_pred HHHHHHH-hccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 145 MPIMQQF-REIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 145 ~~~~~~~-~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
..+.+.+ ....+++++||++|. |+++|++.|.+.++..
T Consensus 163 ~~~l~~~~~~~~~~i~vSA~~g~------------gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 163 KEFIEGTVAENAPIIPISALHGA------------NIDVLVKAIEDFIPTP 201 (410)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTB------------SHHHHHHHHHHHSCCC
T ss_pred HHHHHhcCcCCCeEEEeeCCCCC------------CHHHHHHHHHHhCCCC
Confidence 2222221 112389999999999 9999999999888754
No 247
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.75 E-value=1.7e-17 Score=154.62 Aligned_cols=169 Identities=14% Similarity=0.114 Sum_probs=99.6
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccc---ccceeCCeeEEEEEeCCCCccch-----------
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRL---PEDFYPDRVPITIIDTPSSVEDR----------- 77 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~---~~~~~~~~~~~~l~Dt~G~~~~~----------- 77 (514)
.....++|+|+|++|||||||+|+|++..+.....+.. ++|. ...+...+..+.||||||+....
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAK-SITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC--------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCC-ceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHH
Confidence 34567999999999999999999999988633322111 2232 22344557889999999975422
Q ss_pred hhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCcccccch----hHhhhhHHHHHH
Q 010254 78 GKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQV----SLEQVMMPIMQQ 150 (514)
Q Consensus 78 ~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~----~~~~~~~~~~~~ 150 (514)
.....++..+|++|+|+|++.... ... .|+..+.+.. ...|+++|+||+|+....... ...+.+..+.+.
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~-~~~--~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTE-EEH--KATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSS-HHH--HHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCH-HHH--HHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 122334567899999999875433 222 2444443211 146999999999987652111 001234556666
Q ss_pred HhccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 151 FREIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 151 ~~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
++. .++.+++..+... ...++.+|++.+...+.+
T Consensus 181 ~~~--~~~~~~~~~~~~~-------~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 181 FGD--RYCALNNKATGAE-------QEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HSS--SEEECCTTCCHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred cCC--EEEEEECCCCccc-------cHHHHHHHHHHHHHHHHH
Confidence 664 5777766543100 012788888888776643
No 248
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.75 E-value=1e-17 Score=150.15 Aligned_cols=118 Identities=19% Similarity=0.179 Sum_probs=95.1
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIA 447 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~v 447 (514)
..+||+++|++|||||||+++|+++.+.. +.++.+ +....+... ...+.+|||+|++.+...+ ..+++.+|++
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~--~~~~~~~d~i 93 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYK--NISFEVWDLGGQTGVRPYW--RCYFSDTDAV 93 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEET--TEEEEEEEECCSSSSCCCC--SSSSTTCCEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEEC--CEEEEEEECCCCHhHHHHH--HHHhhcCCEE
Confidence 45899999999999999999999888764 335555 333444443 4677799999998887665 5788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 448 VFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 448 ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
++|||++++++|+.+..|+..+...... .+.|+++|+||+|+...
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 94 IYVVDSTDRDRMGVAKHELYALLDEDEL--RKSLLLIFANKQDLPDA 138 (189)
T ss_dssp EEEEETTCCTTHHHHHHHHHHHHTCSTT--TTCEEEEEEECTTSTTC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhhc--CCCeEEEEEECCCCcCC
Confidence 9999999999999999998887664322 27999999999999764
No 249
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.74 E-value=2e-17 Score=167.55 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=105.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCC--CC------CCCCCC----------------------Cccccc---ceeC
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFP--AN------VPPVLP----------------------PTRLPE---DFYP 60 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~--~~------~~~~~~----------------------~tt~~~---~~~~ 60 (514)
+..++|+++|++|+|||||+|+|++.... .. ..+..+ +.|+.. .+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 45699999999999999999999875410 00 000011 222221 2345
Q ss_pred CeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCC-cEEEEEecccCcccc--cc
Q 010254 61 DRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKV-PVIVVGCKLDLRDEN--QQ 137 (514)
Q Consensus 61 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~-pvilv~NK~Dl~~~~--~~ 137 (514)
.+..+.||||||++++...+..++..+|++|+|+|++++...+... ++..+... +. |+|+|+||+|+.+.. +.
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~--~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR--HSYIASLL--GIKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCEEEEEEECTTTTTSCHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCeEEEEEEcCcCCcccHHHH
Confidence 6788999999999999888888899999999999999876544433 55555554 44 699999999997631 11
Q ss_pred hhHhhhhHHHHHHHh--c-cCcEEEcCccccccc-eecC
Q 010254 138 VSLEQVMMPIMQQFR--E-IETCIECSALKQIQV-KCFN 172 (514)
Q Consensus 138 ~~~~~~~~~~~~~~~--~-~~~~i~~Sa~~~~~~-~~f~ 172 (514)
....+....+.+.++ . ..+++++||++|.|+ +.|.
T Consensus 178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 122333444555554 1 127999999999977 5554
No 250
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.74 E-value=3.7e-18 Score=154.11 Aligned_cols=141 Identities=11% Similarity=0.035 Sum_probs=98.2
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEE--EEECC-CCcEEEEEEecCChhHHHhhhc-Ccccc
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVN--VVDQP-GGTKKTVVLREIPEEAVAKLLS-NKDSL 441 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~i~dt~g~~~~~~~~~-~~~~~ 441 (514)
.+..+||+++|++|||||||++++.+..... ++.+..+... ...+. +....+.+|||+|++.|..... ...++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 3456899999999999999999988854332 2222222222 22222 2556778999999988764431 03678
Q ss_pred ccCcEEEEEEeCCCh--hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------c-cchhhHHHHHH----H
Q 010254 442 AACDIAVFVHDSSDE--SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------A-MAIQDSTRVFT----F 507 (514)
Q Consensus 442 ~~~d~vilv~D~~~~--~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------~-~~~~~~~~~~~----~ 507 (514)
+++|++|+|||++++ ++++.+..|+..+.... ++.|+++|+||+|+... + +...+++++++ .
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN----PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC----TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC----CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence 999999999999997 77788888888775433 27999999999998652 2 44556777888 6
Q ss_pred cCCccc
Q 010254 508 LVMVLY 513 (514)
Q Consensus 508 ~~~~~~ 513 (514)
++++|+
T Consensus 170 ~~~~~~ 175 (196)
T 3llu_A 170 LHLSFY 175 (196)
T ss_dssp SCEEEE
T ss_pred CCcceE
Confidence 676664
No 251
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.74 E-value=1.1e-17 Score=171.72 Aligned_cols=153 Identities=18% Similarity=0.145 Sum_probs=100.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCC----------------------------CCCCCCCCCcccc---cceeCCe
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFP----------------------------ANVPPVLPPTRLP---EDFYPDR 62 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~----------------------------~~~~~~~~~tt~~---~~~~~~~ 62 (514)
+..+||+|+|++|+|||||+|+|++.... ........++|+. ..+...+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 45699999999999999999999865210 0011112244432 2355678
Q ss_pred eEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcccHHH-----HHHHHHHHHHhcCCCCcEEEEEecccCcccccc
Q 010254 63 VPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDE-----LSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQ 137 (514)
Q Consensus 63 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~-----~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~ 137 (514)
..+.||||||++++...+..+++.+|++|+|+|++++.+... .....+..+... ...|+|+|+||+|+.+. +.
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~-~~ 188 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDW-SQ 188 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTT-CH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccc-hH
Confidence 899999999999999989999999999999999998643221 111133334433 13569999999999863 22
Q ss_pred hhHhh---hhHHHHHHHhc---cCcEEEcCccccccc
Q 010254 138 VSLEQ---VMMPIMQQFRE---IETCIECSALKQIQV 168 (514)
Q Consensus 138 ~~~~~---~~~~~~~~~~~---~~~~i~~Sa~~~~~~ 168 (514)
...++ .+..+...++. ..+++++||++|.|+
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi 225 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGV 225 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCc
Confidence 22222 23333334332 127899999999977
No 252
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=1.6e-17 Score=148.03 Aligned_cols=118 Identities=19% Similarity=0.181 Sum_probs=91.7
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|++|||||||+++|+++++ ..+.++.+. ....+.+. ...+.+|||+|.+.+...+ ..+++.+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~--~~~~~~~~--~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~ 88 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGF--NVETLSYK--NLKLNVWDLGGQTSIRPYW--RCYYADTAA 88 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTC--CEEEEEET--TEEEEEEEEC----CCTTG--GGTTTTEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCcc--ceEEEEEC--CEEEEEEECCCCHhHHHHH--HHHhccCCE
Confidence 4569999999999999999999998887 344455553 33445444 3667799999998877665 578899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
+++|||++++.+|+.+..|+..+...... .+.|+++|+||+|+..
T Consensus 89 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 89 VIFVVDSTDKDRMSTASKELHLMLQEEEL--QDAALLVFANKQDQPG 133 (183)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHTTSSTT--SSCEEEEEEECTTSTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHcChhh--CCCeEEEEEECCCCCC
Confidence 99999999999999999999888764321 2799999999999976
No 253
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.73 E-value=8.3e-18 Score=168.38 Aligned_cols=173 Identities=15% Similarity=0.124 Sum_probs=118.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC-------CCCC--CC----CCCCCccccc---ceeCCeeEEEEEeCCCCccchh
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADT-------FPAN--VP----PVLPPTRLPE---DFYPDRVPITIIDTPSSVEDRG 78 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~-------~~~~--~~----~~~~~tt~~~---~~~~~~~~~~l~Dt~G~~~~~~ 78 (514)
..++|+++|++|+|||||+++|++.. +... .. ....+.|+.. .+...+..+.||||||++++..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999999741 1000 00 0122344332 3445678899999999998888
Q ss_pred hHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCcccc-cchhHhhhhHHHHHHHhc---
Q 010254 79 KLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLDLRDEN-QQVSLEQVMMPIMQQFRE--- 153 (514)
Q Consensus 79 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~--- 153 (514)
.+..+++.+|++|+|+|++++...+..+ ++..++.. ++| +++|+||+|+.++. ......+.+..+.+.++.
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e--~l~~~~~~--~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTRE--HLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 8888899999999999999876555443 34555555 788 78999999997531 111222344555555542
Q ss_pred cCcEEEcCccccccceecCCCCChhh-HHHHHHHHHHHhcCc
Q 010254 154 IETCIECSALKQIQVKCFNSPLQPSE-IVGVKRVVQEKLREG 194 (514)
Q Consensus 154 ~~~~i~~Sa~~~~~~~~f~~~l~~~~-i~~L~~~i~~~~~~~ 194 (514)
..+++++||++|.|... ... ..| +++|++.|.+.++..
T Consensus 158 ~~~~i~~SA~~g~n~~~--~~~-~~g~i~~Ll~~l~~~~p~p 196 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRD--PEL-GLKSVQKLLDAVDTYIPVP 196 (397)
T ss_dssp TSCEEECCHHHHHTTCC--TTT-THHHHHHHHHHHHHHSCCC
T ss_pred cCcEEEeehhhcccccC--CCc-cCCcHHHHHHHHHHhCCCC
Confidence 13899999999874210 000 125 999999999988753
No 254
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.73 E-value=1.3e-17 Score=171.70 Aligned_cols=116 Identities=12% Similarity=0.092 Sum_probs=86.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC-------------CCCCC------CCCcc---cccceeCCeeEEEEEeCCC
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPA-------------NVPPV------LPPTR---LPEDFYPDRVPITIIDTPS 72 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~-------------~~~~~------~~~tt---~~~~~~~~~~~~~l~Dt~G 72 (514)
+..+|+|+|++|||||||+|+|+...... ..... ..++| ....+...++.+.||||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 45799999999999999999997322100 00000 01112 2223455678999999999
Q ss_pred CccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc
Q 010254 73 SVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 73 ~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 134 (514)
+.++......+++.+|++|+|+|++++.+.+... +...+... ++|+++|+||+|+...
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~--~~~~~~~~--~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK--LMEVCRLR--HTPIMTFINKMDRDTR 149 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH--HHHHHHTT--TCCEEEEEECTTSCCS
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEeCCCCccc
Confidence 9999988999999999999999999887777665 55556655 8999999999999654
No 255
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.73 E-value=1.5e-17 Score=158.16 Aligned_cols=161 Identities=20% Similarity=0.235 Sum_probs=91.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCC----CCCCcc---cccceeCC--eeEEEEEeCCCCccc-------hh
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPP----VLPPTR---LPEDFYPD--RVPITIIDTPSSVED-------RG 78 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~-~~~----~~~~tt---~~~~~~~~--~~~~~l~Dt~G~~~~-------~~ 78 (514)
.++|+|+|.+|||||||+|+|++.+.... .+. ..++++ ....+..+ ..++.||||||+.+. ..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 58999999999999999999988764332 100 012222 11222223 358999999998432 11
Q ss_pred hH-------HHhhhc-------------cCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccch
Q 010254 79 KL-------GEELRR-------------ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQV 138 (514)
Q Consensus 79 ~~-------~~~~~~-------------ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~ 138 (514)
.. ..++.+ +|+++++++.+.. .+...+..++..+.. ++|+|+|+||+|+....
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~--- 160 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPE--- 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHH---
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHH---
Confidence 21 334443 7899999976542 233333347777665 79999999999987641
Q ss_pred hHhhhhHHHHHHHhc-cCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCcc
Q 010254 139 SLEQVMMPIMQQFRE-IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREGV 195 (514)
Q Consensus 139 ~~~~~~~~~~~~~~~-~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~ 195 (514)
........+.+.+.. -.+++++||+++. |++++.+.|.+.+|-..
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~------------~~~~l~~~l~~~~p~~v 206 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDE------------EENKLVKKIKDRLPLAV 206 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------------------CHHHHHTCSEEC
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCCh------------hHHHHHHHHhcCCCcEE
Confidence 111112223333321 1278999999999 99999999998887543
No 256
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.73 E-value=1e-17 Score=146.69 Aligned_cols=132 Identities=16% Similarity=0.147 Sum_probs=93.7
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHH------hhhcCccccc
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA------KLLSNKDSLA 442 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~------~~~~~~~~~~ 442 (514)
.++|+++|++|||||||+++|.+..+...+.++.+.+.....+... + ....+|||+|++.+. .+. ..+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~-~~l~i~Dt~G~~~~~~~~~~~~~~--~~~~~ 78 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN-G-EKFKVVDLPGVYSLTANSIDEIIA--RDYII 78 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET-T-EEEEEEECCCCSCSSSSSHHHHHH--HHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC-C-cEEEEEECCCcccCCCcchhHHHH--HHHHh
Confidence 4789999999999999999999987655544555555555555554 3 567799999987653 222 23443
Q ss_pred --cCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 443 --ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 443 --~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
++|++++|+|+++.++ ...|+..+... +.|+++|+||+|+...+....+.++++++++++|+
T Consensus 79 ~~~~~~~i~v~D~~~~~~---~~~~~~~~~~~------~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 142 (165)
T 2wji_A 79 NEKPDLVVNIVDATALER---NLYLTLQLMEM------GANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVV 142 (165)
T ss_dssp HHCCSEEEEEEETTCHHH---HHHHHHHHHHT------TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEE
T ss_pred cCCCCEEEEEecCCchhH---hHHHHHHHHhc------CCCEEEEEEchHhccccChhhHHHHHHHHhCCCEE
Confidence 8999999999987643 44577666553 69999999999987644322357889998888765
No 257
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.72 E-value=3.8e-17 Score=149.57 Aligned_cols=123 Identities=20% Similarity=0.195 Sum_probs=89.1
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCC-cEEEEEEecCChhHHHh-hhcCccccccCc
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGG-TKKTVVLREIPEEAVAK-LLSNKDSLAACD 445 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~dt~g~~~~~~-~~~~~~~~~~~d 445 (514)
..+||+++|++|||||||+++|++..+...+. +.+..+. .+.+.+. ...+.+|||+|++.+.. ++ ..+++.+|
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--~~~~~~~~ 80 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLL--DRFKSSAR 80 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHH--HHHGGGEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeE--EEEecCCCccEEEEEECCCChhHHHHHH--HHHHhhCC
Confidence 35899999999999999999999998877764 3343333 3555533 56778999999999887 55 46789999
Q ss_pred EEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 010254 446 IAVFVHDSSDES-SWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 495 (514)
Q Consensus 446 ~vilv~D~~~~~-s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 495 (514)
++|+|||+++.. ++.....++..+.........+.|+++|+||+|+...+
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 999999999853 46666555444322210001269999999999997643
No 258
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.72 E-value=2.8e-17 Score=161.13 Aligned_cols=140 Identities=19% Similarity=0.243 Sum_probs=111.4
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+++|++|||||||+++|+++.+...+.++.+..+ ...+...+....+.+|||+|.+.+.... ..+++.+|+
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ 229 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLR--PLSYPQTDV 229 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTG--GGGCTTCSE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHH--HHhccCCCE
Confidence 4458999999999999999999999888777766655433 3445555344455699999999887666 578899999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------------ccchhhHHHHHHHcCC-c
Q 010254 447 AVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------------AMAIQDSTRVFTFLVM-V 511 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~-~ 511 (514)
+++|||++++.+|+.+. .|+..+.... +++|+++|+||+|+... .+...++.++++.+++ +
T Consensus 230 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 305 (332)
T 2wkq_A 230 FLICFSLVSPASFHHVRAKWYPEVRHHC----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 305 (332)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC----TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhhC----CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcE
Confidence 99999999999999987 6888777654 26999999999998653 2456778889999887 5
Q ss_pred cc
Q 010254 512 LY 513 (514)
Q Consensus 512 ~~ 513 (514)
|+
T Consensus 306 ~~ 307 (332)
T 2wkq_A 306 YL 307 (332)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 259
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.72 E-value=3e-17 Score=149.74 Aligned_cols=165 Identities=18% Similarity=0.157 Sum_probs=100.7
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-cccceeCCeeEEEEEeCCCCccc----------hhhH
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-LPEDFYPDRVPITIIDTPSSVED----------RGKL 80 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~ 80 (514)
....+.+|+|+|++|||||||+|+|++..+...+.+ .++++ ....+...+ .+.+|||||+... ....
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~-~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK-TPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccC-CCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 346789999999999999999999998874333333 23333 222222212 5889999998532 1222
Q ss_pred HHhh---hccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcE
Q 010254 81 GEEL---RRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETC 157 (514)
Q Consensus 81 ~~~~---~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (514)
..++ ..++++++|+|++.+.+.... .+..++... +.|+++|+||+|+.+........+....+.........+
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~~--~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~ 175 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVDS--NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV 175 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCce
Confidence 2333 578999999999887665432 144444444 789999999999876411111011222333333222367
Q ss_pred EEcCccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 158 IECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 158 i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
+++||+++. +++++.+.|.+.++.+
T Consensus 176 ~~~Sal~~~------------~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 176 ETFSSLKKQ------------GVDKLRQKLDTWFSEM 200 (210)
T ss_dssp EECBTTTTB------------SHHHHHHHHHHHHC--
T ss_pred EEEeecCCC------------CHHHHHHHHHHHHhhc
Confidence 899999999 9999999998877654
No 260
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.72 E-value=5e-17 Score=168.97 Aligned_cols=161 Identities=17% Similarity=0.175 Sum_probs=111.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC--CC-----CCCCCC-----CCCcccc-----cce---eCCeeEEEEEeCCCCc
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADT--FP-----ANVPPV-----LPPTRLP-----EDF---YPDRVPITIIDTPSSV 74 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~--~~-----~~~~~~-----~~~tt~~-----~~~---~~~~~~~~l~Dt~G~~ 74 (514)
+-.+|+|+|++|+|||||+++|+... +. ..+... ..+.|+. ..+ +...+.+.||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 35689999999999999999998632 10 011110 1222321 122 2335889999999999
Q ss_pred cchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc-
Q 010254 75 EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE- 153 (514)
Q Consensus 75 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~- 153 (514)
++...+..+++.+|++|+|+|++++.+.+.... |...... ++|+++|+||+|+... + .++...++.+.++.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~-~~~~~~~---~ipiIvViNKiDl~~a-~---~~~v~~ei~~~lg~~ 154 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLAN-CYTAMEM---DLEVVPVLNKIDLPAA-D---PERVAEEIEDIVGID 154 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHH-HHHHHHT---TCEEEEEEECTTSTTC-C---HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHHC---CCCEEEeeeccCcccc-c---HHHHHHHHHHHhCCC
Confidence 999888999999999999999999888777664 6555543 7999999999999765 1 22334455555542
Q ss_pred cCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCcc
Q 010254 154 IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREGV 195 (514)
Q Consensus 154 ~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~ 195 (514)
..+++++||++|. |+++|++.|.+.++...
T Consensus 155 ~~~vi~vSAktg~------------GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 155 ATDAVRCSAKTGV------------GVQDVLERLVRDIPPPE 184 (599)
T ss_dssp CTTCEEECTTTCT------------THHHHHHHHHHHSCCCC
T ss_pred cceEEEeecccCC------------CchhHHHHHhhcCCCcc
Confidence 1258999999999 99999999999987643
No 261
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.72 E-value=5e-18 Score=161.84 Aligned_cols=134 Identities=12% Similarity=0.113 Sum_probs=96.4
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCC---CCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHh-hhcCccccccCcE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSD---NYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK-LLSNKDSLAACDI 446 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~-~~~~~~~~~~~d~ 446 (514)
||+++|++|||||||++++.++-+.. .+.+|.+..+.. + . ......+|||+|+++|.. .+....+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999988765433 244666766542 2 3 446788999999999853 1111568899999
Q ss_pred EEEEEeCCCh--hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-------c-cchhhHHHHHHH----cCCcc
Q 010254 447 AVFVHDSSDE--SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-------A-MAIQDSTRVFTF----LVMVL 512 (514)
Q Consensus 447 vilv~D~~~~--~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------~-~~~~~~~~~~~~----~~~~~ 512 (514)
+|+|||++++ ++++.+..|+..+.... +++|++++|||+|+..+ + +..++++++|++ ++++|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~----~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f 151 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVN----PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSF 151 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHC----TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEE
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcC----CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceE
Confidence 9999999998 33344444455554432 37999999999999753 2 446667788885 67777
Q ss_pred c
Q 010254 513 Y 513 (514)
Q Consensus 513 ~ 513 (514)
|
T Consensus 152 ~ 152 (331)
T 3r7w_B 152 Y 152 (331)
T ss_dssp E
T ss_pred E
Confidence 5
No 262
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.71 E-value=7.9e-18 Score=161.92 Aligned_cols=133 Identities=15% Similarity=0.144 Sum_probs=96.9
Q ss_pred HHHHHHhcCCCC-CCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcc-cHHHHHHH
Q 010254 31 SLIVTAAADTFP-ANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPE-TLDELSTF 108 (514)
Q Consensus 31 sLin~l~~~~~~-~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~ 108 (514)
+|+++++.+.|. ..+.++.+.. ....+..++ .+.+||| ++++......+++++|++|+|||++++. ++..+..
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~-~~~~~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~- 106 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDR-VEYTPDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDK- 106 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCE-EEEECCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHH-
T ss_pred cEEEEEEcccccccCCCCCCccE-EEEEEcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHH-
Confidence 688888888886 5555544422 222222223 7999999 8888888889999999999999999987 6776665
Q ss_pred HHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCCCCChhhHHHHHHH
Q 010254 109 WLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNSPLQPSEIVGVKRV 186 (514)
Q Consensus 109 ~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~ 186 (514)
|+..++.. ++|++||+||+|+.+. +.+ +....+++.+....++++|||++|. |++++++.
T Consensus 107 ~l~~~~~~--~~piilv~NK~DL~~~-~~v---~~~~~~~~~~~~~~~~~~~SAktg~------------gv~~lf~~ 166 (301)
T 1u0l_A 107 FLVLAEKN--ELETVMVINKMDLYDE-DDL---RKVRELEEIYSGLYPIVKTSAKTGM------------GIEELKEY 166 (301)
T ss_dssp HHHHHHHT--TCEEEEEECCGGGCCH-HHH---HHHHHHHHHHTTTSCEEECCTTTCT------------THHHHHHH
T ss_pred HHHHHHHC--CCCEEEEEeHHHcCCc-hhH---HHHHHHHHHHhhhCcEEEEECCCCc------------CHHHHHHH
Confidence 88887764 8999999999999765 221 2234455555421389999999999 88876543
No 263
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.71 E-value=2.9e-17 Score=162.04 Aligned_cols=147 Identities=14% Similarity=0.085 Sum_probs=105.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
+|+++|++|+|||||+++|+. .++|+. ..+...+..+.+|||||++++...+...++.+|++|+|+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~-----------~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVv 91 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK-----------KGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCI 91 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE-----------EEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHh-----------CCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEE
Confidence 999999999999999999982 222322 234456778999999999999888888899999999999
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCCCcE-EEEEe-cccCcccccchhHhhhhHHHHHHHh-ccCcEEE--cCccc---cc
Q 010254 95 ACDRPETLDELSTFWLPELRRLEVKVPV-IVVGC-KLDLRDENQQVSLEQVMMPIMQQFR-EIETCIE--CSALK---QI 166 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~~~~pv-ilv~N-K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~i~--~Sa~~---~~ 166 (514)
| +..... ...+ ++..+... ++|. |+|+| |+|+ +........+.+..+.+.++ ...++++ +||++ +.
T Consensus 92 d-~~g~~~-qt~e-~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~ 165 (370)
T 2elf_A 92 P-PQGLDA-HTGE-CIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE 165 (370)
T ss_dssp C-TTCCCH-HHHH-HHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred c-CCCCcH-HHHH-HHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence 9 654332 2232 66666665 7787 99999 9999 43111111122233332222 1138999 99999 98
Q ss_pred cceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 167 QVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 167 ~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
|+++|++.|.+.++.
T Consensus 166 ------------gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 166 ------------GVDELKARINEVAEK 180 (370)
T ss_dssp ------------THHHHHHHHHHHHHH
T ss_pred ------------CHHHHHHHHHhhccc
Confidence 999999999887653
No 264
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.71 E-value=8.2e-17 Score=166.97 Aligned_cols=162 Identities=16% Similarity=0.171 Sum_probs=113.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCC--CC-----CCCCCC-----CCCccc-----cccee---CCeeEEEEEeCCCC
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADT--FP-----ANVPPV-----LPPTRL-----PEDFY---PDRVPITIIDTPSS 73 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~--~~-----~~~~~~-----~~~tt~-----~~~~~---~~~~~~~l~Dt~G~ 73 (514)
.+-.+|+|+|++|+|||||+++|+... +. ..+... ..+.|+ ...+. ...+.+.||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 345799999999999999999998631 10 001110 122232 12222 23578999999999
Q ss_pred ccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc
Q 010254 74 VEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE 153 (514)
Q Consensus 74 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (514)
.++......+++.+|++|+|+|++++.+.+.... |..... . ++|+++|+||+|+... + .++...++.+.++.
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~-~~~a~~-~--~ipiIvviNKiDl~~a-~---~~~v~~el~~~lg~ 155 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVAN-FWKAVE-Q--DLVIIPVINKIDLPSA-D---VDRVKKQIEEVLGL 155 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHH-HHHHHH-T--TCEEEEEEECTTSTTC-C---HHHHHHHHHHTSCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHH-HHHHHH-C--CCCEEEEEeccCcccc-C---HHHHHHHHHHhhCC
Confidence 9998888889999999999999999888877664 655444 3 8999999999999765 1 22233444444432
Q ss_pred -cCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCcc
Q 010254 154 -IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREGV 195 (514)
Q Consensus 154 -~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~ 195 (514)
..+++++||++|. |+++|++.|.+.+|...
T Consensus 156 ~~~~vi~vSAktg~------------GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 156 DPEEAILASAKEGI------------GIEEILEAIVNRIPPPK 186 (600)
T ss_dssp CGGGCEECBTTTTB------------SHHHHHHHHHHHSCCCC
T ss_pred CcccEEEEEeecCC------------CchHHHHHHHHhccccc
Confidence 1258999999999 99999999999987653
No 265
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.71 E-value=2.5e-18 Score=161.74 Aligned_cols=143 Identities=17% Similarity=0.127 Sum_probs=96.3
Q ss_pred cCCeEEEEEeCCC---------CCChHHHHHHhhC---CCCCCCCCCCC-CccEEEEEEE--------------CCCCcE
Q 010254 366 ERNVFQCFVFGPK---------KAGKSVLLNSFLG---RPFSDNYTPTT-DERYAVNVVD--------------QPGGTK 418 (514)
Q Consensus 366 ~~~~~ki~iiG~~---------~vGKSsLi~~l~~---~~~~~~~~~~~-~~~~~~~~~~--------------~~~~~~ 418 (514)
....+||+++|++ |||||||+++|++ ..+...+.++. +.++..+.+. +++...
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 3456999999999 9999999999999 55655554543 3332222111 232344
Q ss_pred EEEEEe-----------------------cCChhHHHhhhcCccccc---------------------cCcEEEEEEeCC
Q 010254 419 KTVVLR-----------------------EIPEEAVAKLLSNKDSLA---------------------ACDIAVFVHDSS 454 (514)
Q Consensus 419 ~~~i~d-----------------------t~g~~~~~~~~~~~~~~~---------------------~~d~vilv~D~~ 454 (514)
...+|| ++|+++|..+. ..+++ ++|++|+|||++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAE--KLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTT--CBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhh--hhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 566888 55666555544 34444 799999999999
Q ss_pred Ch--hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHH-cCCccc
Q 010254 455 DE--SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTF-LVMVLY 513 (514)
Q Consensus 455 ~~--~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~ 513 (514)
++ .||+.+..|+..+...... .++|+++|+||+|+...+. ..++++++++ .+++|+
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~--~~~piilV~NK~Dl~~~~~-v~~~~~~~~~~~~~~~~ 232 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAK--TKKPIVVVLTKCDEGVERY-IRDAHTFALSKKNLQVV 232 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHH--TTCCEEEEEECGGGBCHHH-HHHHHHHHHTSSSCCEE
T ss_pred CCchhhHHHHHHHHHHHHHHhcc--CCCCEEEEEEcccccccHH-HHHHHHHHHhcCCCeEE
Confidence 98 9999999999887654111 1699999999999976442 2567788876 366654
No 266
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.2e-17 Score=173.11 Aligned_cols=150 Identities=19% Similarity=0.183 Sum_probs=101.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC------------------------------CCCccc---ccceeC
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPV------------------------------LPPTRL---PEDFYP 60 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~------------------------------~~~tt~---~~~~~~ 60 (514)
+..++|+|+|++|||||||+|+|++... .+... ..++|+ ...+..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~--~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~ 242 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLN--IVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST 242 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSS--CSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcC--CccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec
Confidence 5579999999999999999999998742 22110 123442 234556
Q ss_pred CeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcc---cH--HHHHHHHHHHHHhcCCC-CcEEEEEecccCccc
Q 010254 61 DRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPE---TL--DELSTFWLPELRRLEVK-VPVIVVGCKLDLRDE 134 (514)
Q Consensus 61 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~---s~--~~~~~~~~~~l~~~~~~-~pvilv~NK~Dl~~~ 134 (514)
.+..+.||||||++++...+..+++.+|++|+|+|++++. ++ .......+..+... + .|+|+|+||+|+.+.
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccch
Confidence 7789999999999999888888899999999999998642 00 01111133333333 4 459999999999863
Q ss_pred ccchhH---hhhhHHHHHHHhc---cCcEEEcCccccccc
Q 010254 135 NQQVSL---EQVMMPIMQQFRE---IETCIECSALKQIQV 168 (514)
Q Consensus 135 ~~~~~~---~~~~~~~~~~~~~---~~~~i~~Sa~~~~~~ 168 (514)
+.... .+.+..+...++. ..++++|||++|.|+
T Consensus 321 -~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI 359 (611)
T 3izq_1 321 -SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGV 359 (611)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTT
T ss_pred -hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCc
Confidence 22222 2233344444432 237999999999965
No 267
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.71 E-value=8.1e-18 Score=162.51 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=100.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCCC----------------------ccccc----------c-
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPAN---VPPVLPP----------------------TRLPE----------D- 57 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~---~~~~~~~----------------------tt~~~----------~- 57 (514)
...++|+|+|++|||||||+|+|++.++... ..+..++ ++... .
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999886422 2222232 22110 0
Q ss_pred ----------------eeCCeeEEEEEeCCCCcc-------------chhhHHHhhhccCEEE-EEEeCCCcccHHHHHH
Q 010254 58 ----------------FYPDRVPITIIDTPSSVE-------------DRGKLGEELRRADAVV-LTYACDRPETLDELST 107 (514)
Q Consensus 58 ----------------~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~ad~ii-~v~d~~~~~s~~~~~~ 107 (514)
+......+.||||||+.. +......+++.++.++ +|+|+++..+..+..
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~- 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL- 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH-
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH-
Confidence 011246899999999753 2234567788888776 799988765544432
Q ss_pred HHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHh----ccCcEEEcCccccccceecCCCCChhhHHHH
Q 010254 108 FWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFR----EIETCIECSALKQIQVKCFNSPLQPSEIVGV 183 (514)
Q Consensus 108 ~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L 183 (514)
.|+..+... +.|+++|+||+|+.+... .. . ..+...+. ...+++++||++|. |+++|
T Consensus 183 ~~~~~~~~~--~~~~i~V~NK~Dl~~~~~-~~-~---~~~~~~~~~~~~~~~~v~~~SA~~~~------------gi~~l 243 (299)
T 2aka_B 183 KIAKEVDPQ--GQRTIGVITKLDLMDEGT-DA-R---DVLENKLLPLRRGYIGVVNRSQKDID------------GKKDI 243 (299)
T ss_dssp HHHHHHCTT--CSSEEEEEECGGGSCTTC-CC-H---HHHTTCSSCCTTCEEECCCCCCBCTT------------SCBCH
T ss_pred HHHHHhCCC--CCeEEEEEEccccCCCCc-hH-H---HHHhCCcCcCCCCcEEEECCChhhcc------------ccccH
Confidence 266666544 799999999999976521 11 1 11111110 11267899999999 77777
Q ss_pred HHHHHHH
Q 010254 184 KRVVQEK 190 (514)
Q Consensus 184 ~~~i~~~ 190 (514)
.+.|.+.
T Consensus 244 ~~~l~~~ 250 (299)
T 2aka_B 244 TAALAAE 250 (299)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
No 268
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.71 E-value=2.7e-17 Score=171.18 Aligned_cols=163 Identities=17% Similarity=0.152 Sum_probs=106.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CCCCCcccccc--------------eeCCeeEEEEEeCCCCcc
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVP----PVLPPTRLPED--------------FYPDRVPITIIDTPSSVE 75 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~----~~~~~tt~~~~--------------~~~~~~~~~l~Dt~G~~~ 75 (514)
++.++|+|+|++|+|||||+++|++..+....+ ...+.+..+.. +......+.||||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 356899999999999999999999865422111 11111111100 111223699999999999
Q ss_pred chhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccc--------------h---
Q 010254 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQ--------------V--- 138 (514)
Q Consensus 76 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~--------------~--- 138 (514)
+...+..+++.+|++|+|+|++++...+... .+..++.. ++|+++|+||+|+...... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e--~l~~l~~~--~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~ 158 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQE--ALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ 158 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHH--HHHHHHHc--CCeEEEEecccccccccccccCCchHHHHHHhHHHHH
Confidence 9888777889999999999999854433333 23344554 8999999999999642110 0
Q ss_pred -hHhhhhHHHHHHHh----------------ccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 139 -SLEQVMMPIMQQFR----------------EIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 139 -~~~~~~~~~~~~~~----------------~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
...+.+..+...+. ...+++++||++|. |+++|++.|...++
T Consensus 159 ~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~------------GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGE------------GIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCT------------THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCC------------CchhHHHHHHhhcc
Confidence 01111112222221 11279999999999 99999999987664
No 269
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.70 E-value=1.8e-18 Score=175.63 Aligned_cols=157 Identities=17% Similarity=0.167 Sum_probs=106.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---cceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEE
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP---EDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVV 91 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii 91 (514)
+..+|+|+|++|+|||||+++|.+..+.... .+++|.. ..+..++..+.+|||||++.+...+...+..+|+++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e---~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGE---AGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTT---BCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcccc---CCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 5678999999999999999999986543221 1233311 233345678999999999999888888899999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccc-cchhHh-hhhHHHHHHHhccCcEEEcCccccccce
Q 010254 92 LTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDEN-QQVSLE-QVMMPIMQQFREIETCIECSALKQIQVK 169 (514)
Q Consensus 92 ~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~-~~~~~~-~~~~~~~~~~~~~~~~i~~Sa~~~~~~~ 169 (514)
+|+|++++...+... .+..+... +.|+++|+||+|+.... .....+ .....+...++...+++++||++|.
T Consensus 80 LVVda~~g~~~qT~e--~l~~~~~~--~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~--- 152 (501)
T 1zo1_I 80 LVVAADDGVMPQTIE--AIQHAKAA--QVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT--- 152 (501)
T ss_dssp EEEETTTBSCTTTHH--HHHHHHHT--TCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT---
T ss_pred EEeecccCccHHHHH--HHHHHHhc--CceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc---
Confidence 999998854443333 33444444 79999999999997531 111000 0000011122222379999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHH
Q 010254 170 CFNSPLQPSEIVGVKRVVQEK 190 (514)
Q Consensus 170 ~f~~~l~~~~i~~L~~~i~~~ 190 (514)
|+++|++.|...
T Consensus 153 ---------gI~eLle~I~~~ 164 (501)
T 1zo1_I 153 ---------GIDELLDAILLQ 164 (501)
T ss_dssp ---------TCTTHHHHTTTT
T ss_pred ---------Ccchhhhhhhhh
Confidence 888888887653
No 270
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.70 E-value=8.6e-17 Score=174.17 Aligned_cols=174 Identities=16% Similarity=0.164 Sum_probs=116.9
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCC-------CCC--CCC----CCCCCcccc---cceeCCeeEEEEEeCCCCcc
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADT-------FPA--NVP----PVLPPTRLP---EDFYPDRVPITIIDTPSSVE 75 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~-------~~~--~~~----~~~~~tt~~---~~~~~~~~~~~l~Dt~G~~~ 75 (514)
..+..++|+++|++|+|||||+++|++.. +.. ... ....++|+. ..+...+..+.||||||+++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 34567999999999999999999998741 000 000 112334432 24556678999999999999
Q ss_pred chhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCcccc-cchhHhhhhHHHHHHHhc
Q 010254 76 DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLDLRDEN-QQVSLEQVMMPIMQQFRE 153 (514)
Q Consensus 76 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 153 (514)
+...+..++..+|++|+|+|++++...+..+ ++..+... ++| +|+|+||+|+.++. +.....+.+..+.+.++.
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~QTrE--hL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQTRE--HILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTTHHH--HHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHHHHH--HHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 9888888899999999999999876554433 55566655 788 89999999998631 111222344555555542
Q ss_pred ---cCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 154 ---IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 154 ---~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
..+++++||++|.+-. .--..|+++|++.|.+.++.
T Consensus 448 ~~~~vp~IpvSAktG~ng~----~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGD----AEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCC----HHHHHHHHHHHHHHHHTSCC
T ss_pred cccceeEEEEEeccCCCCC----ccccccchhhHhHHhhhcCC
Confidence 1389999999993100 00002899999999988764
No 271
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.70 E-value=9.2e-17 Score=171.21 Aligned_cols=163 Identities=17% Similarity=0.173 Sum_probs=109.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--------------cccc----------------ceeCCe-
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPT--------------RLPE----------------DFYPDR- 62 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~t--------------t~~~----------------~~~~~~- 62 (514)
+.+++|+|+|++|||||||+|+|++.++ .+++..++| |+.. .+...+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~--~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~ 144 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENL--LPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPA 144 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSC--SCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHH
Confidence 4679999999999999999999999874 333334444 1100 000000
Q ss_pred -----------------------------eEEEEEeCCCCccc---hhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHH
Q 010254 63 -----------------------------VPITIIDTPSSVED---RGKLGEELRRADAVVLTYACDRPETLDELSTFWL 110 (514)
Q Consensus 63 -----------------------------~~~~l~Dt~G~~~~---~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~ 110 (514)
..+.||||||+... ...+..+++++|++|+|+|++++.+..+.. .|.
T Consensus 145 ~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~-~l~ 223 (695)
T 2j69_A 145 EAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERR-YLE 223 (695)
T ss_dssp HHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHH-HHH
T ss_pred HHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHH-HHH
Confidence 46999999998653 344567899999999999999887777665 255
Q ss_pred HHHHhcCCCCcEEEEEecccCccccc--ch---hHhh---hh-HHHHHHHh----------ccCcEEEcCcc--------
Q 010254 111 PELRRLEVKVPVIVVGCKLDLRDENQ--QV---SLEQ---VM-MPIMQQFR----------EIETCIECSAL-------- 163 (514)
Q Consensus 111 ~~l~~~~~~~pvilv~NK~Dl~~~~~--~~---~~~~---~~-~~~~~~~~----------~~~~~i~~Sa~-------- 163 (514)
..+... ++|+++|+||+|+..... .. ..++ .+ ..+...+. ...++++|||+
T Consensus 224 ~~l~~~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 224 NYIKGR--GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp HHTTTS--CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred HHHHhh--CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 555544 789999999999875410 00 0010 11 11111121 11269999999
Q ss_pred ------ccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 164 ------KQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 164 ------~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
++. |+++|.+.+.+.+..
T Consensus 302 ~~~~~~~~~------------Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 302 NPQADLDGT------------GFPKFMDSLNTFLTR 325 (695)
T ss_dssp CTTCCCTTS------------SHHHHHHHHHHHHHH
T ss_pred Cchhhhhcc------------CHHHHHHHHHHHHHH
Confidence 777 999999998887653
No 272
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.69 E-value=6e-17 Score=159.74 Aligned_cols=100 Identities=21% Similarity=0.134 Sum_probs=68.8
Q ss_pred CCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccccc-chhHhhhhHHHHHH
Q 010254 72 SSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ-QVSLEQVMMPIMQQ 150 (514)
Q Consensus 72 G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~ 150 (514)
..+.+...+..+.+.+|++++|+|++++. ..|.+.+.+...++|+++|+||+|+.+... .....+....+++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~ 128 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQ 128 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHH
Confidence 34667777888888999999999998742 237677766655899999999999976411 11112222233344
Q ss_pred Hhc-cCcEEEcCccccccceecCCCCChhhHHHHHHHHHH
Q 010254 151 FRE-IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 151 ~~~-~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~ 189 (514)
.+. ..+++.+||++|. |+++|++.+.+
T Consensus 129 ~g~~~~~v~~iSA~~g~------------gi~~L~~~l~~ 156 (368)
T 3h2y_A 129 LGLKPEDVFLISAAKGQ------------GIAELADAIEY 156 (368)
T ss_dssp TTCCCSEEEECCTTTCT------------THHHHHHHHHH
T ss_pred cCCCcccEEEEeCCCCc------------CHHHHHhhhhh
Confidence 332 1268999999999 99988877654
No 273
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.69 E-value=1.3e-16 Score=150.56 Aligned_cols=118 Identities=19% Similarity=0.164 Sum_probs=84.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccc---ccceeCCeeEEEEEeCCCCccchhhHHHhhh-----
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRL---PEDFYPDRVPITIIDTPSSVEDRGKLGEELR----- 85 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~---~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~----- 85 (514)
++.++|+|+|++|||||||+|+|++..+. .....+++|. ...+...+..+.||||||++++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVV--RVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCS--CCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCc--ccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 46799999999999999999999998842 2222333332 2334456789999999999876544333332
Q ss_pred ----ccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCC---CCcEEEEEecccCccc
Q 010254 86 ----RADAVVLTYACDRPETLDELSTFWLPELRRLEV---KVPVIVVGCKLDLRDE 134 (514)
Q Consensus 86 ----~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~ 134 (514)
++|++++|+|++... +...+..|+..+..... ..|+++|+||+|+...
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 899999999987654 54444448877776431 2499999999999643
No 274
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.69 E-value=1.9e-16 Score=152.93 Aligned_cols=135 Identities=19% Similarity=0.149 Sum_probs=103.0
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhH----------HHhhhc
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA----------VAKLLS 436 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~----------~~~~~~ 436 (514)
...-.|+++|++|||||||+|+|++..+..++..+.+++..+..+...+....+.+|||+|... +....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~- 86 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA- 86 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH-
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH-
Confidence 4456899999999999999999999998877665555555544444432267788999999732 22232
Q ss_pred CccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCc-ccccchhhHHHHHHHcC
Q 010254 437 NKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD-SFAMAIQDSTRVFTFLV 509 (514)
Q Consensus 437 ~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~ 509 (514)
..+++.+|++++|+|+++..+++....|+..+... +.|+++|+||+|+. ..........++++.++
T Consensus 87 -~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~------~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~ 153 (308)
T 3iev_A 87 -KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL------NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP 153 (308)
T ss_dssp -HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG------CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCT
T ss_pred -HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc------CCCEEEEEECccCCCCHHHHHHHHHHHHHhcc
Confidence 46778999999999999988888887777777653 69999999999998 44455666777877765
No 275
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.69 E-value=2.1e-16 Score=160.76 Aligned_cols=151 Identities=16% Similarity=0.104 Sum_probs=102.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCC--CCCC-------------CC--------C-----CCCCcccc---cceeCCe
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADT--FPAN-------------VP--------P-----VLPPTRLP---EDFYPDR 62 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~--~~~~-------------~~--------~-----~~~~tt~~---~~~~~~~ 62 (514)
+..++|+++|++|+|||||+|+|++.. +... .. . ...++|+. ..+...+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 467999999999999999999998741 1100 00 0 01233322 2345667
Q ss_pred eEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCccc---H----HHHHHHHHHHHHhcCCCCc-EEEEEecccCccc
Q 010254 63 VPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPET---L----DELSTFWLPELRRLEVKVP-VIVVGCKLDLRDE 134 (514)
Q Consensus 63 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s---~----~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~ 134 (514)
..+.||||||++++...+..++..+|++|+|+|++++.. | +... ++..+... +.| +|+|+||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~--~~~~~~~~--~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE--HALLAFTL--GVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH--HHHHHHHT--TCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH--HHHHHHHc--CCCeEEEEEEccccccC
Confidence 899999999999998888889999999999999987531 2 2222 33334444 665 9999999999742
Q ss_pred --ccchhHhhhhHHHHHHHhc---cCcEEEcCccccccc
Q 010254 135 --NQQVSLEQVMMPIMQQFRE---IETCIECSALKQIQV 168 (514)
Q Consensus 135 --~~~~~~~~~~~~~~~~~~~---~~~~i~~Sa~~~~~~ 168 (514)
.+.....+.+..+++.++. ..+++++||++|.|+
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv 199 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNM 199 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCc
Confidence 1212233344555555542 138999999999976
No 276
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.69 E-value=1.2e-16 Score=155.35 Aligned_cols=168 Identities=17% Similarity=0.149 Sum_probs=103.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCC---Ccccc--------------------------------
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPAN---VPPVLP---PTRLP-------------------------------- 55 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~---~~~~~~---~tt~~-------------------------------- 55 (514)
....+|+|+|++|||||||+|+|++.++... ..+..+ .++..
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 3457999999999999999999999885221 122222 11110
Q ss_pred ---------------------c-ceeCCeeEEEEEeCCCCcc-------------chhhHHHhhhccCEEEEEEeCCCcc
Q 010254 56 ---------------------E-DFYPDRVPITIIDTPSSVE-------------DRGKLGEELRRADAVVLTYACDRPE 100 (514)
Q Consensus 56 ---------------------~-~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~ad~ii~v~d~~~~~ 100 (514)
. .+......+.+|||||+.. .......+++.+|++++|+|..+..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 0 0223446899999999864 2234566889999999999974322
Q ss_pred -cHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhcc-CcEEEcCccccccceecCCCCChh
Q 010254 101 -TLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI-ETCIECSALKQIQVKCFNSPLQPS 178 (514)
Q Consensus 101 -s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~Sa~~~~~~~~f~~~l~~~ 178 (514)
...... .+...+... ++|+++|+||+|+..... . ....+...+... ..++++|+..+.+++-. .
T Consensus 182 ~~~~~~~-~i~~~~~~~--~~~~i~v~NK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~------~ 247 (315)
T 1jwy_B 182 LANSDAL-QLAKEVDPE--GKRTIGVITKLDLMDKGT-D----AMEVLTGRVIPLTLGFIGVINRSQEDIIAK------K 247 (315)
T ss_dssp STTCSHH-HHHHHHCSS--CSSEEEEEECTTSSCSSC-C----CHHHHTTSSSCCTTCEEECCCCCHHHHSSS------C
T ss_pred hhhhHHH-HHHHHhCCC--CCcEEEEEcCcccCCcch-H----HHHHHhCCCccCCCCeEEEecCChhhhccC------C
Confidence 211211 255566554 799999999999986521 0 111111111111 25777777776543211 1
Q ss_pred hHHHHHHHHHHHhcCcc
Q 010254 179 EIVGVKRVVQEKLREGV 195 (514)
Q Consensus 179 ~i~~L~~~i~~~~~~~~ 195 (514)
|+.++.+.+.+.++.+.
T Consensus 248 gv~~l~~~~~~~~~~~~ 264 (315)
T 1jwy_B 248 SIRESLKSEILYFKNHP 264 (315)
T ss_dssp CHHHHHHHHHHHHHTCT
T ss_pred CHHHHHHHHHHHHhCCC
Confidence 89999999988887643
No 277
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.68 E-value=6.4e-18 Score=176.63 Aligned_cols=153 Identities=18% Similarity=0.139 Sum_probs=82.7
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------------------------CCCCCCCccccc---ceeCC
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPAN----------------------------VPPVLPPTRLPE---DFYPD 61 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~----------------------------~~~~~~~tt~~~---~~~~~ 61 (514)
.+..++|+|+|++|+|||||+|+|++...... .....+++|+.. .+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 34568999999999999999999975310000 000123445332 34455
Q ss_pred eeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcc---cH--HHHHHHHHHHHHhcCCCCc-EEEEEecccCcccc
Q 010254 62 RVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPE---TL--DELSTFWLPELRRLEVKVP-VIVVGCKLDLRDEN 135 (514)
Q Consensus 62 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~---s~--~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~ 135 (514)
+..+.||||||++++...+..++..+|++|+|+|++++. .+ .......+..+... ++| +|+|+||+|+.+.
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~- 330 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSW- 330 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTT-
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEeccccccc-
Confidence 788999999999998887788889999999999998643 11 11111133444444 665 9999999999762
Q ss_pred cchhHhhhhHHHHHHH----hc---cCcEEEcCccccccc
Q 010254 136 QQVSLEQVMMPIMQQF----RE---IETCIECSALKQIQV 168 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~----~~---~~~~i~~Sa~~~~~~ 168 (514)
.....++....+...+ +. ..+++++||++|.|+
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI 370 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNL 370 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSS
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccc
Confidence 1122222233333333 21 116899999999955
No 278
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.68 E-value=8.3e-17 Score=156.82 Aligned_cols=119 Identities=21% Similarity=0.256 Sum_probs=90.5
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..+||+|+|++|||||||+++|++..+...+ +|.+ .....+.. ....+.+|||+|++.+..+. ..+++.+|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~--~~~~~~~~--~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~ 235 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNISFTVWDVGGQDKIRPLW--RHYFQNTQG 235 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETT--EEEEEEEE--TTEEEEEEECC-----CCSH--HHHHTTEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccc--eEEEEEec--CcEEEEEEECCCCHhHHHHH--HHHhccCCE
Confidence 45689999999999999999999998876543 4433 33344444 34677799999999888766 577899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
+|+|||++++.+|+.+..|+..+...... +++|++||+||+|+...
T Consensus 236 vilV~D~~~~~s~~~~~~~~~~~~~~~~~--~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 236 LIFVVDSNDRERVNEAREELMRMLAEDEL--RDAVLLVFANKQDLPNA 281 (329)
T ss_dssp EEEEEETTCSSSHHHHHHHHHHHHTCGGG--TTCEEEEEEECTTSTTC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHhhhcc--CCCeEEEEEECccCCcc
Confidence 99999999999999999988877654321 27999999999999764
No 279
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.68 E-value=1.3e-16 Score=157.49 Aligned_cols=100 Identities=19% Similarity=0.138 Sum_probs=67.6
Q ss_pred CCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccccc-chhHhhhhHHHHHH
Q 010254 72 SSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ-QVSLEQVMMPIMQQ 150 (514)
Q Consensus 72 G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~~~ 150 (514)
.++.+...+..+...++++++|+|++++.+ .|.+.+.+...++|+++|+||+|+.+... .....+....+++.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~ 130 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEE 130 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHH
Confidence 467778888888899999999999998763 25555555445899999999999976411 11111222222333
Q ss_pred Hhcc-CcEEEcCccccccceecCCCCChhhHHHHHHHHHH
Q 010254 151 FREI-ETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQE 189 (514)
Q Consensus 151 ~~~~-~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~ 189 (514)
.+.. .+++.+||++|. |+++|.+.+.+
T Consensus 131 ~g~~~~~v~~iSA~~g~------------gi~~L~~~I~~ 158 (369)
T 3ec1_A 131 LGLCPVDVCLVSAAKGI------------GMAKVMEAINR 158 (369)
T ss_dssp TTCCCSEEEECBTTTTB------------THHHHHHHHHH
T ss_pred cCCCcccEEEEECCCCC------------CHHHHHHHHHh
Confidence 3321 268999999999 99988877654
No 280
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.68 E-value=2.9e-16 Score=162.52 Aligned_cols=118 Identities=21% Similarity=0.237 Sum_probs=96.6
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
...+||+++|++|||||||+|+|++.++.... +|.+ .....+... ...+.+|||+|++.+..++ ..+++++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~-~T~~--~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~--~~~~~~ad~ 392 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVG--FNVETVTYK--NVKFNVWDVGGQDKIRPLW--RHYYTGTQG 392 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSS--EEEEEEESS--SCEEEEEEECCCGGGSGGG--GGGGTTCCE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcC-Cccc--eeEEEEEeC--CEEEEEEECCCcHHHHHHH--HHHhccCCE
Confidence 45689999999999999999999998865433 4444 444555554 3567799999999998776 688999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 447 AVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 447 vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
+|+|||++++.+|+.+..|+..+...... .++|+|||+||+|+..
T Consensus 393 ~i~V~D~~~~~s~~~~~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 393 LIFVVDCADRDRIDEARQELHRIINDREM--RDAIILIFANKQDLPD 437 (497)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTSGGG--TTCEEEEEEECCSSSS
T ss_pred EEEEEECcchhHHHHHHHHHHHHhhhhhc--CCCcEEEEEECCCCCc
Confidence 99999999999999999999888664321 2799999999999976
No 281
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.67 E-value=1.5e-16 Score=161.11 Aligned_cols=156 Identities=16% Similarity=0.157 Sum_probs=103.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcC--CCCCCC--------------------------CCCCCCcccc---cceeCCe
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAAD--TFPANV--------------------------PPVLPPTRLP---EDFYPDR 62 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~--~~~~~~--------------------------~~~~~~tt~~---~~~~~~~ 62 (514)
+..++|+++|++|+|||||+++|++. .+.... .....++|+. ..+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45699999999999999999999874 221100 0002233432 2455667
Q ss_pred eEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHH------HHHHHHHhcCCC-CcEEEEEecccCcccc
Q 010254 63 VPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELST------FWLPELRRLEVK-VPVIVVGCKLDLRDEN 135 (514)
Q Consensus 63 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~------~~~~~l~~~~~~-~pvilv~NK~Dl~~~~ 135 (514)
..+.||||||++++...+..++..+|++|+|+|+++ .+++.... .....+... + .|+|+|+||+|+.+..
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSST
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCCcc
Confidence 899999999999998888889999999999999998 45543221 123333333 4 4699999999997621
Q ss_pred ----cchhHhhhhHHHHHHHhc---cCcEEEcCccccccc-eecC
Q 010254 136 ----QQVSLEQVMMPIMQQFRE---IETCIECSALKQIQV-KCFN 172 (514)
Q Consensus 136 ----~~~~~~~~~~~~~~~~~~---~~~~i~~Sa~~~~~~-~~f~ 172 (514)
+.....+.+..+++.++. ..+++++||++|.|+ +.+.
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 112223344555555542 137999999999977 4443
No 282
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.67 E-value=8.7e-17 Score=143.89 Aligned_cols=133 Identities=16% Similarity=0.148 Sum_probs=99.3
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHH------hhhcCcccc
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA------KLLSNKDSL 441 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~------~~~~~~~~~ 441 (514)
..+||+++|++|||||||+++|++..+...+.++.+.+.....+... ...+.+|||+|.+.+. .+. ..++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~--~~~~ 81 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIA--RDYI 81 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHHH--HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHHH--HHHH
Confidence 45899999999999999999999987655555665655655666654 3667799999987653 222 2334
Q ss_pred c--cCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 442 A--ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 442 ~--~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
. .+|++++|+|+++ ++....|+..+... +.|+++|+||+|+...+....+.+++++.++++++
T Consensus 82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 146 (188)
T 2wjg_A 82 INEKPDLVVNIVDATA---LERNLYLTLQLMEM------GANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVV 146 (188)
T ss_dssp HHHCCSEEEEEEEGGG---HHHHHHHHHHHHTT------TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEE
T ss_pred hccCCCEEEEEecchh---HHHHHHHHHHHHhc------CCCEEEEEEhhhccccccchHHHHHHHHHhCCCeE
Confidence 3 5999999999864 56677787777653 69999999999997655334578889998888764
No 283
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.67 E-value=5e-16 Score=147.37 Aligned_cols=118 Identities=17% Similarity=0.135 Sum_probs=83.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc---cccceeCCeeEEEEEeCCCCccchhhH-------HHh
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR---LPEDFYPDRVPITIIDTPSSVEDRGKL-------GEE 83 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt---~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~ 83 (514)
...++|+++|.+|||||||+|+|++..+.. ++..+++| ....+...+..+.+|||||++++.... ..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVS--ISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSC--CCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccc--ccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 357999999999999999999999987532 22223333 223344567889999999997654221 111
Q ss_pred --hhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCC-C--CcEEEEEecccCccc
Q 010254 84 --LRRADAVVLTYACDRPETLDELSTFWLPELRRLEV-K--VPVIVVGCKLDLRDE 134 (514)
Q Consensus 84 --~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~-~--~pvilv~NK~Dl~~~ 134 (514)
...+|++++|+|++.. ++...+..|+..+..... + +|+++|+||+|+...
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 2479999999998753 354444458887765422 2 699999999999764
No 284
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.67 E-value=4e-16 Score=144.27 Aligned_cols=138 Identities=13% Similarity=0.096 Sum_probs=92.9
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCCh------hH----HHhhhc
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE------EA----VAKLLS 436 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~------~~----~~~~~~ 436 (514)
...+||+++|++|||||||+|+|++..+.....+..+.......+... ...+.+|||+|. +. +..+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~- 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTIT- 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHHH-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHHH-
Confidence 456899999999999999999999998763333333444444444433 356779999998 33 33222
Q ss_pred CccccccCcEEEEEEeCCChhhHH--HHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cch---hhHHHHHHHcC-
Q 010254 437 NKDSLAACDIAVFVHDSSDESSWK--RATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAI---QDSTRVFTFLV- 509 (514)
Q Consensus 437 ~~~~~~~~d~vilv~D~~~~~s~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~---~~~~~~~~~~~- 509 (514)
..+..+|++++|||++++.+|+ ....|+..+.... ++.|+++|+||+|+...+ +.. ....++++..+
T Consensus 104 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
T 2qu8_A 104 --ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF----SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN 177 (228)
T ss_dssp --HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-----CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCS
T ss_pred --HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh----cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCC
Confidence 3467889999999999988875 2345666665542 269999999999997654 222 24667777766
Q ss_pred -Cccc
Q 010254 510 -MVLY 513 (514)
Q Consensus 510 -~~~~ 513 (514)
++++
T Consensus 178 ~~~~~ 182 (228)
T 2qu8_A 178 PIKFS 182 (228)
T ss_dssp CEEEE
T ss_pred CceEE
Confidence 5543
No 285
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.67 E-value=4.1e-17 Score=149.83 Aligned_cols=135 Identities=19% Similarity=0.218 Sum_probs=96.4
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCC---CCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCcccccc
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDN---YTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAA 443 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~ 443 (514)
...++|+++|++|||||||+++|++..+... +.++.+..+ ....+.+|||+|.+.+...+ ..+++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~--~~~~~~ 78 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKL--SDYLKT 78 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHH--HHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHH--HHHHHh
Confidence 3458999999999999999999999886542 222222222 33456789999998886655 355555
Q ss_pred ----CcEEEEEEeCC-ChhhHHHHHHHHHHHHhcCCC-CCCCCcEEEEEeCCCCccccc-c------hhhHHHHHHHcCC
Q 010254 444 ----CDIAVFVHDSS-DESSWKRATELLVEVASYGED-TGFEVPCLIVAAKDDLDSFAM-A------IQDSTRVFTFLVM 510 (514)
Q Consensus 444 ----~d~vilv~D~~-~~~s~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~-~------~~~~~~~~~~~~~ 510 (514)
+|++++|||++ ++.+|..+..|+..+...... ...++|+++|+||+|+...+. . ..+..+++...++
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 158 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK 158 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999 888999999998877653110 012799999999999976542 2 3445666665554
Q ss_pred cc
Q 010254 511 VL 512 (514)
Q Consensus 511 ~~ 512 (514)
+|
T Consensus 159 ~~ 160 (218)
T 1nrj_B 159 SL 160 (218)
T ss_dssp HH
T ss_pred cc
Confidence 44
No 286
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.67 E-value=1.6e-17 Score=162.95 Aligned_cols=220 Identities=12% Similarity=0.004 Sum_probs=121.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcC------CC-------C----------------------CCCCCCCC------Cc
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAAD------TF-------P----------------------ANVPPVLP------PT 52 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~------~~-------~----------------------~~~~~~~~------~t 52 (514)
.....|+|+|.||||||||+|+|++. +. . .......+ ++
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 34789999999999999999999962 10 0 00000011 22
Q ss_pred ccc---c--ceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 010254 53 RLP---E--DFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGC 127 (514)
Q Consensus 53 t~~---~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~N 127 (514)
|.. . .+...+..+.++||+|+.... ......+|++++|+|++.+...+.+. ..+ . +.|.++|+|
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~----~~i--l--~~~~ivVlN 220 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK----RGI--I--EMADLVAVT 220 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC------------------C--CSCSEEEEC
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH----HHH--H--hcCCEEEEe
Confidence 211 0 112356789999999975432 33467999999999987654322111 111 2 568899999
Q ss_pred cccCcccccchhHhhhhHHHHHHHh--------ccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCcccCCC
Q 010254 128 KLDLRDENQQVSLEQVMMPIMQQFR--------EIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREGVNERG 199 (514)
Q Consensus 128 K~Dl~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~~~~~ 199 (514)
|+|+.+.. ........+...+. ...+++.+||+++. |+++|++.|.+.++.... .
T Consensus 221 K~Dl~~~~---~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~------------Gi~~L~~~I~~~~~~~~~--~ 283 (349)
T 2www_A 221 KSDGDLIV---PARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGE------------GISEMWDKMKDFQDLMLA--S 283 (349)
T ss_dssp CCSGGGHH---HHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCT------------THHHHHHHHHHHHHHHHH--H
T ss_pred eecCCCch---hHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCC------------CHHHHHHHHHHHHHHHhh--C
Confidence 99986531 11111222222211 11268999999999 999999999887754111 1
Q ss_pred cchhhHHHHHHHHHhcCCcchhhHHHhhccCC-CccccccCCCCCCCccCCCCCceecChhHH--HHHHHHHHh
Q 010254 200 LTLAGFLFLHALFIEKGRLETTWTVLRKFGYN-NDIKLADELIPYSAFKRAPDQSVELTNEAI--DFLKGIFEL 270 (514)
Q Consensus 200 ~~~~~~~~~~~l~~~~~r~~~~~~~L~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~elt~~~~--~~L~~iF~~ 270 (514)
-.+...++.+.+ ..++..++..... ...+.+.+.+.. +++.+.. ..+++|... ++|+.+|++
T Consensus 284 ~~~~~~R~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~-~~~~~~~~~~~~~l~~~~~~ 348 (349)
T 2www_A 284 GELTAKRRKQQK-------VWMWNLIQESVLEHFRTHPTVREQIP-LLEQKVL-IGALSPGLAADFLLKAFKSR 348 (349)
T ss_dssp SHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHSHHHHHHHH-HHHHHHH-TTSSCHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHH-------HHHHHHHHHHHHHHHHhCcchhHHHH-HHHHHHH-cCCCCHHHHHHHHHHHHhcC
Confidence 123333444444 3444444443211 000122222211 5555555 778888866 899999874
No 287
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.6e-17 Score=147.09 Aligned_cols=129 Identities=19% Similarity=0.205 Sum_probs=86.9
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCC---CCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccc-
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDN---YTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLA- 442 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~- 442 (514)
...++|+++|++|||||||+++|++..+... +.++.+..+ ....+.+|||+|.+.+...+ ..++.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~--~~~~~~ 114 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKL--SDYLKT 114 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCH--HHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHH--HHHHHh
Confidence 3458999999999999999999999876542 112222111 23345689999987665443 23333
Q ss_pred ---cCcEEEEEEeCC-ChhhHHHHHHHHHHHHhcCCC-CCCCCcEEEEEeCCCCcccccchhhHHHHHH
Q 010254 443 ---ACDIAVFVHDSS-DESSWKRATELLVEVASYGED-TGFEVPCLIVAAKDDLDSFAMAIQDSTRVFT 506 (514)
Q Consensus 443 ---~~d~vilv~D~~-~~~s~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 506 (514)
.+|++++|||++ +..++..+..|+..+...... ...+.|+++|+||+|+...+........+.+
T Consensus 115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~ 183 (193)
T 2ged_A 115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES 183 (193)
T ss_dssp HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHH
Confidence 489999999999 899999999988776543210 0126999999999999875433333344433
No 288
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.66 E-value=1e-16 Score=152.15 Aligned_cols=134 Identities=13% Similarity=0.087 Sum_probs=97.5
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHh----------hhcCc
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK----------LLSNK 438 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~----------~~~~~ 438 (514)
.++|+++|.+|||||||+|+|++..+.....++.+.......+... + ..+.+|||+|...+.. +....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~-~-~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTT-D-HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECS-S-CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeC-C-CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 4799999999999999999999998655555666666666666665 3 3566799999765442 11111
Q ss_pred cccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 439 DSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 439 ~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
...+.+|++++|+|+++.++...+..++.. . ++|+++|+||+|+...+.......++++.++++++
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~---~------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i 146 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQLLE---L------GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVI 146 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHHHHH---H------TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEE
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHHHHh---c------CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEE
Confidence 123799999999999987665544444433 2 59999999999997755444567788888988765
No 289
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.66 E-value=2e-16 Score=137.55 Aligned_cols=126 Identities=17% Similarity=0.189 Sum_probs=82.4
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCC-CCCCCccEEEEEEECCCCcEEEEEEecCChhH-------HHhhhcCcccc
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNY-TPTTDERYAVNVVDQPGGTKKTVVLREIPEEA-------VAKLLSNKDSL 441 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~-------~~~~~~~~~~~ 441 (514)
.||+++|++|||||||+++|.+..+.... .++.+.+.....+... + ..+.+|||+|.+. +.... ...+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~Dt~G~~~~~~~~~~~~~~~--~~~~ 77 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETD-R-GRFLLVDTGGLWSGDKWEKKIQEKV--DRAL 77 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEET-T-EEEEEEECGGGCSSSSCCHHHHHHH--HHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeC-C-ceEEEEECCCCCCccchHHHHHHHH--HHHH
Confidence 68999999999999999999988764322 2334444454555554 3 4677999999865 33332 4577
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCC
Q 010254 442 AACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVM 510 (514)
Q Consensus 442 ~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 510 (514)
+.+|++++|||+++..+. ...++..+.... +.|+++|+||+|+...+ ++..+++ ++++
T Consensus 78 ~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~---~~~~~~~-~~~~ 135 (161)
T 2dyk_A 78 EDAEVVLFAVDGRAELTQ--ADYEVAEYLRRK-----GKPVILVATKVDDPKHE---LYLGPLY-GLGF 135 (161)
T ss_dssp TTCSEEEEEEESSSCCCH--HHHHHHHHHHHH-----TCCEEEEEECCCSGGGG---GGCGGGG-GGSS
T ss_pred HhCCEEEEEEECCCcccH--hHHHHHHHHHhc-----CCCEEEEEECcccccch---HhHHHHH-hCCC
Confidence 899999999999986333 333433333322 69999999999998742 3334454 4555
No 290
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.66 E-value=6.7e-17 Score=151.54 Aligned_cols=131 Identities=11% Similarity=0.063 Sum_probs=97.3
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHh----------hhcCcc
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK----------LLSNKD 439 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~----------~~~~~~ 439 (514)
.+|+++|.+|||||||+|+|++........++.+.+.....+... + ..+.+|||+|...+.. +. ..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~-~-~~~~lvDtpG~~~~~~~~~~~~~~e~i~--~~ 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLG-E-HLIEITDLPGVYSLVANAEGISQDEQIA--AQ 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEET-T-EEEEEEECCCCSSCC------CHHHHHH--HH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEEC-C-eEEEEEeCCCcccccccccCCCHHHHHH--HH
Confidence 379999999999999999999987655555666666666666655 3 4777999999755432 22 34
Q ss_pred cc--ccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 440 SL--AACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 440 ~~--~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
++ +.+|++++|+|+++.+++..+..+ +... ++|+++|+||+|+...+.......++++.++++++
T Consensus 78 ~~~~~~~d~vi~VvDas~~~~~~~l~~~---l~~~------~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi 144 (256)
T 3iby_A 78 SVIDLEYDCIINVIDACHLERHLYLTSQ---LFEL------GKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVI 144 (256)
T ss_dssp HHHHSCCSEEEEEEEGGGHHHHHHHHHH---HTTS------CSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEE
T ss_pred HHhhCCCCEEEEEeeCCCchhHHHHHHH---HHHc------CCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEE
Confidence 44 789999999999987666554444 3322 69999999999997755444556778888998875
No 291
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.65 E-value=2.4e-16 Score=141.13 Aligned_cols=131 Identities=10% Similarity=0.080 Sum_probs=93.1
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCC-----------hhHHHhhhcCc
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIP-----------EEAVAKLLSNK 438 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g-----------~~~~~~~~~~~ 438 (514)
+||+++|++|||||||+++|++..+...+.++.+... ..+... ...+|||+| ++.+.... .
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--~ 73 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEI--V 73 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHH--H
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHH--H
Confidence 6899999999999999999999988766655444332 223222 456899999 67777665 4
Q ss_pred ccccc-CcEEEEEEeCCChhhHHHH-HHHHHH--------HHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHc
Q 010254 439 DSLAA-CDIAVFVHDSSDESSWKRA-TELLVE--------VASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFL 508 (514)
Q Consensus 439 ~~~~~-~d~vilv~D~~~~~s~~~~-~~~~~~--------~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 508 (514)
.+++. ++++++||++.+..++..+ ..|... +...... .+.|+++|+||+|+...+ ....+++++++
T Consensus 74 ~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~--~~~~~~~~~~~ 149 (190)
T 2cxx_A 74 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNV--QEVINFLAEKF 149 (190)
T ss_dssp HHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCH--HHHHHHHHHHH
T ss_pred HHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh--cCCceEEEeehHhccCcH--HHHHHHHHHHh
Confidence 55665 7777777777777888776 556532 1111000 169999999999998754 56688899988
Q ss_pred CCcc
Q 010254 509 VMVL 512 (514)
Q Consensus 509 ~~~~ 512 (514)
+++|
T Consensus 150 ~~~~ 153 (190)
T 2cxx_A 150 EVPL 153 (190)
T ss_dssp TCCG
T ss_pred hhhh
Confidence 8754
No 292
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.65 E-value=1.7e-15 Score=156.08 Aligned_cols=117 Identities=12% Similarity=0.089 Sum_probs=83.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCC----CC---------C------CCCCcccc---cceeCCeeEEEEEeCC
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPAN----VP---------P------VLPPTRLP---EDFYPDRVPITIIDTP 71 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~----~~---------~------~~~~tt~~---~~~~~~~~~~~l~Dt~ 71 (514)
.+..+|+|+|++|||||||+++|+...-... +. . ...+.|+. ..+..+++.+.|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 4568999999999999999999996421110 00 0 01122221 2344567899999999
Q ss_pred CCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc
Q 010254 72 SSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 72 G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 134 (514)
|++++......+++.+|++|+|+|++++...... .+...+... ++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~--~~~~~~~~~--~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR--KLMEVTRLR--DTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH--HHHHHHTTT--TCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHH--HHHHHHHHc--CCCEEEEEcCcCCccc
Confidence 9999888888899999999999999886543332 244555444 7999999999999764
No 293
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.65 E-value=3.2e-16 Score=138.80 Aligned_cols=113 Identities=17% Similarity=0.191 Sum_probs=87.9
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDI 446 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~ 446 (514)
+..++|+++|++|||||||+++|++..+...+.++.+.++....+..+ + ..+.+|||+|++.+.... ...++.+|+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ 81 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVN-D-KKITFLDTPGHEAFTTMR--ARGAQVTDI 81 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEET-T-EEEEESCCCSSSSSSCSC--CSSCCCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeC-C-ceEEEEECCCCHHHHHHH--HHHHhhCCE
Confidence 456899999999999999999999999887776666666655556655 3 455689999998887665 577899999
Q ss_pred EEEEEeCCCh---hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 447 AVFVHDSSDE---SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 447 vilv~D~~~~---~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
+++|||+++. .+++.+ ..+... ++|+++|+||+|+..
T Consensus 82 ~i~v~d~~~~~~~~~~~~l----~~~~~~------~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 82 VILVVAADDGVMPQTVEAI----NHAKAA------NVPIIVAINKMDKPE 121 (178)
T ss_dssp EEEEEETTCCCCHHHHHHH----HHHGGG------SCCEEEEEETTTSSC
T ss_pred EEEEEECCCCCcHHHHHHH----HHHHhC------CCCEEEEEECccCCc
Confidence 9999999984 444332 222221 699999999999976
No 294
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.65 E-value=1.9e-16 Score=148.74 Aligned_cols=135 Identities=16% Similarity=0.112 Sum_probs=97.0
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhh----cCcccc--
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLL----SNKDSL-- 441 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~----~~~~~~-- 441 (514)
..++|+++|.+|||||||+|+|++..+.....+..+.......+.. +...+.+|||+|...+.... ....++
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY--KGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE--TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE--CCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 3589999999999999999999998876444454454444444443 34677899999976543211 002333
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 442 AACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 442 ~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
..+|++++|+|+++.++.. .|...+... ++|+++|+||+|+...+....+..++++.++++++
T Consensus 82 ~~~d~ii~V~D~t~~~~~~---~~~~~l~~~------~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi 144 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSL---YLLLEILEM------EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVV 144 (258)
T ss_dssp SCCSEEEEEEETTSCHHHH---HHHHHHHTT------TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEE
T ss_pred cCCCEEEEEeCCCchhhHH---HHHHHHHhc------CCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEE
Confidence 5899999999999875543 355555543 69999999999997655434568889999998875
No 295
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.65 E-value=3.7e-16 Score=159.38 Aligned_cols=155 Identities=17% Similarity=0.109 Sum_probs=89.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCC--CCC--------------------CCCC------CCCCccccc---ceeCCe
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADT--FPA--------------------NVPP------VLPPTRLPE---DFYPDR 62 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~--~~~--------------------~~~~------~~~~tt~~~---~~~~~~ 62 (514)
+..++|+++|++|+|||||+++|+... +.. +... ...+.|+.. .+...+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 456899999999999999999997521 100 0000 122444332 345567
Q ss_pred eEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcc---cHH---HHHHHHHHHHHhcCCCCc-EEEEEecccCcccc
Q 010254 63 VPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPE---TLD---ELSTFWLPELRRLEVKVP-VIVVGCKLDLRDEN 135 (514)
Q Consensus 63 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~---s~~---~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~ 135 (514)
..+.||||||++++...+...+..+|++|+|+|++++. +|+ .... .+..+... ++| +|+|+||+|+....
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e-~l~~~~~~--~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTRE-HAVLARTQ--GINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHH-HHHHHHHT--TCSSEEEEEECTTSTTCS
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHH-HHHHHHHc--CCCEEEEEEECccCCCcc
Confidence 89999999999999888888899999999999998762 221 1111 22233333 677 99999999996421
Q ss_pred ----cchhHhhhhHHHHHHH-hc----cCcEEEcCccccccc-eec
Q 010254 136 ----QQVSLEQVMMPIMQQF-RE----IETCIECSALKQIQV-KCF 171 (514)
Q Consensus 136 ----~~~~~~~~~~~~~~~~-~~----~~~~i~~Sa~~~~~~-~~f 171 (514)
+.....+.+..+.+.+ +. ..+++++||++|.|+ +.|
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1122222344455544 21 127999999999977 555
No 296
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.65 E-value=7.8e-17 Score=160.18 Aligned_cols=80 Identities=23% Similarity=0.321 Sum_probs=46.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccce--------------------------eC-CeeEEEEEe
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDF--------------------------YP-DRVPITIID 69 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~--------------------------~~-~~~~~~l~D 69 (514)
++|+|+|.||||||||+|+|++... .++..+.+|+.... .. ...++.+||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~---~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvD 77 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV---EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVD 77 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC-----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC---cccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEE
Confidence 5899999999999999999999872 22233444421110 11 146899999
Q ss_pred CCCCccc----hhhHH---HhhhccCEEEEEEeCCCc
Q 010254 70 TPSSVED----RGKLG---EELRRADAVVLTYACDRP 99 (514)
Q Consensus 70 t~G~~~~----~~~~~---~~~~~ad~ii~v~d~~~~ 99 (514)
|||+... ..... .+++.+|++++|+|+++.
T Consensus 78 tpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 78 VAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp CC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 9998642 22222 347899999999999875
No 297
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.64 E-value=1.8e-16 Score=149.71 Aligned_cols=131 Identities=15% Similarity=0.059 Sum_probs=92.9
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHH------hhhcCccccc
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA------KLLSNKDSLA 442 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~------~~~~~~~~~~ 442 (514)
.+||+++|+||||||||+|+|++........+..+... +...+.. ...+.+|||+|.+.+. .+. +.++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~--~~~~~ 77 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVA--RDYLL 77 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHH--HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHH--HHHHh
Confidence 47999999999999999999999874433334333333 3333342 3456789999976653 222 23443
Q ss_pred --cCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 443 --ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 443 --~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
.+|++++|+|+++.+++ ..|...+... ++|+++|+||+|+...+....+..++++.++++++
T Consensus 78 ~~~~d~vi~V~D~t~~e~~---~~~~~~l~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi 141 (272)
T 3b1v_A 78 SQRADSILNVVDATNLERN---LYLTTQLIET------GIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVV 141 (272)
T ss_dssp TTCCSEEEEEEEGGGHHHH---HHHHHHHHHT------CSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEE
T ss_pred cCCCCEEEEEecCCchHhH---HHHHHHHHhc------CCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEE
Confidence 69999999999886554 3455555543 69999999999997654334577889999998865
No 298
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.63 E-value=7.8e-16 Score=138.51 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=77.7
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCC----------hhHHHhhhc
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIP----------EEAVAKLLS 436 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g----------~~~~~~~~~ 436 (514)
...++|+++|++|||||||+|+|++..+...+.++.+.+........+ + .+.+|||+| ++.+..+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~- 96 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-D--ELHFVDVPGYGFAKVSKSEREAWGRMI- 96 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-T--TEEEEECCCBCCCSSCHHHHHHHHHHH-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-C--cEEEEECCCCCccccCHHHHHHHHHHH-
Confidence 456899999999999999999999998655554544444444444444 3 467899999 77777665
Q ss_pred CccccccC---cEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 010254 437 NKDSLAAC---DIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 495 (514)
Q Consensus 437 ~~~~~~~~---d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 495 (514)
..+++.+ |++++|+|++++.++.... ++..+.. . +.|+++|+||+|+...+
T Consensus 97 -~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-~-----~~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 97 -ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-Y-----GIPVIVIATKADKIPKG 150 (195)
T ss_dssp -HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-T-----TCCEEEEEECGGGSCGG
T ss_pred -HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-c-----CCCEEEEEECcccCChH
Confidence 3555555 9999999999987766543 1222222 2 69999999999998754
No 299
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.63 E-value=4.9e-16 Score=136.96 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=86.0
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCC-CCCCCccEEEEEEECCCCcEEEEEEecCChhH----HHh--hhcCcccc
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-TPTTDERYAVNVVDQPGGTKKTVVLREIPEEA----VAK--LLSNKDSL 441 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~----~~~--~~~~~~~~ 441 (514)
.+||+++|++|||||||+|+|.+..+.... .++.+.++....+.+. + ..+.+|||+|.+. +.. +......+
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID-G-MPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET-T-EEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEEC-C-eEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 479999999999999999999998764333 2444555555666665 4 3467899999743 111 11112467
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 442 AACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 442 ~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
+.+|++++|||++++.+++ ...|+..+..... .++|+++|+||+|+..
T Consensus 82 ~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVD-PAEIWPEFIARLP---AKLPITVVRNKADITG 129 (172)
T ss_dssp HTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSC---TTCCEEEEEECHHHHC
T ss_pred HhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcc---cCCCEEEEEECccCCc
Confidence 8999999999999988876 3467666655432 2699999999999854
No 300
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.62 E-value=1.1e-15 Score=146.59 Aligned_cols=116 Identities=22% Similarity=0.252 Sum_probs=84.5
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhH--------HHhhhcCcccc
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA--------VAKLLSNKDSL 441 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~--------~~~~~~~~~~~ 441 (514)
.+|+++|+||||||||+|+|++..+..++..+.+++..+..+... +.....+|||+|... +.... ..++
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~~~l~~~~~~~~--~~~l 84 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPMDALGEFMDQEV--YEAL 84 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCCSHHHHHHHHHH--HHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe-CCcEEEEecCccccchhhHHHHHHHHHH--HHHH
Confidence 579999999999999999999999876655444444444433333 456777999999654 33332 4678
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHHH-HHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 442 AACDIAVFVHDSSDESSWKRATELLV-EVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 442 ~~~d~vilv~D~~~~~s~~~~~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
+.+|++++|+|++++.+. .+.|+. .+.... ++.|+++|+||+|+...
T Consensus 85 ~~ad~il~VvD~~~~~~~--~~~~i~~~l~~~~----~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTP--EDELVARALKPLV----GKVPILLVGNKLDAAKY 132 (301)
T ss_dssp SSCSEEEEEEETTSCCCH--HHHHHHHHHGGGT----TTSCEEEEEECGGGCSS
T ss_pred hcCCEEEEEEECCCCCCh--HHHHHHHHHHhhc----CCCCEEEEEECcccCCc
Confidence 999999999999987433 345653 444432 26999999999999763
No 301
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.62 E-value=1.5e-16 Score=156.65 Aligned_cols=164 Identities=16% Similarity=0.216 Sum_probs=83.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCC-----CCCCcccc---ccee--CCeeEEEEEeCCCC-------ccch
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPP-----VLPPTRLP---EDFY--PDRVPITIIDTPSS-------VEDR 77 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~-~~~-----~~~~tt~~---~~~~--~~~~~~~l~Dt~G~-------~~~~ 77 (514)
.++|+|+|++|||||||+|+|++...... ..+ ..+++++. ..+. .....+.+|||||+ +.+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 58999999999999999999887653221 110 01122111 1122 22457999999999 4444
Q ss_pred hhHH-------HhhhccCEE-----------EEEEeCCC-cccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccch
Q 010254 78 GKLG-------EELRRADAV-----------VLTYACDR-PETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQV 138 (514)
Q Consensus 78 ~~~~-------~~~~~ad~i-----------i~v~d~~~-~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~ 138 (514)
.... .++++++.+ ++||++++ ..++..++..|+..+. .++|+|+|+||+|+... +..
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~-~ev 192 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTL-KER 192 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCH-HHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCH-HHH
Confidence 3333 556554432 24444444 5566666544666553 47999999999999865 211
Q ss_pred hH-hhhhHHHHHHHhccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 139 SL-EQVMMPIMQQFREIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 139 ~~-~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
.. .+.+..+...++ + +++++||+++.+-+ .+..+.+.|.+.+|..
T Consensus 193 ~~~k~~i~~~~~~~~-i-~~~~~Sa~~~~~~e---------~~~~l~~~i~~~ip~~ 238 (361)
T 2qag_A 193 ERLKKRILDEIEEHN-I-KIYHLPDAESDEDE---------DFKEQTRLLKASIPFS 238 (361)
T ss_dssp HHHHHHHHHHTTCC--C-CSCCCC------------------CHHHHHHHHHTCSCE
T ss_pred HHHHHHHHHHHHHCC-C-CEEeCCCcCCCcch---------hHHHHHHHHHhcCCCC
Confidence 11 112222333332 2 78999999997321 3456666677766654
No 302
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.62 E-value=7.6e-15 Score=155.81 Aligned_cols=116 Identities=21% Similarity=0.203 Sum_probs=85.8
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC---------------CCCcc---cccceeCCeeEEEEEeCCCCc
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPV---------------LPPTR---LPEDFYPDRVPITIIDTPSSV 74 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~---------------~~~tt---~~~~~~~~~~~~~l~Dt~G~~ 74 (514)
.....+|+|+|++|+|||||+++|++.......... ..+.+ ....+....+.+.||||||++
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 356789999999999999999999954321111000 00112 112333457889999999999
Q ss_pred cchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCc
Q 010254 75 EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLR 132 (514)
Q Consensus 75 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~ 132 (514)
++......+++.+|++++|+|++++...+... +...+... ++|+++|+||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~--~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTER--AWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHHH--HHHHHHHc--cCCEEEEecCCchh
Confidence 99888889999999999999988776554443 66666665 89999999999987
No 303
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.62 E-value=5.6e-15 Score=157.43 Aligned_cols=118 Identities=16% Similarity=0.064 Sum_probs=85.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcC--CCCCC--C-----CCC------CCCcccc---cceeCCeeEEEEEeCCCCc
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAAD--TFPAN--V-----PPV------LPPTRLP---EDFYPDRVPITIIDTPSSV 74 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~--~~~~~--~-----~~~------~~~tt~~---~~~~~~~~~~~l~Dt~G~~ 74 (514)
..+..+|+|+|++|||||||+|+|+.. .+... + ... ..++|+. ..+...+..+.||||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 345689999999999999999999952 21100 0 000 1233322 2244557899999999999
Q ss_pred cchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc
Q 010254 75 EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 75 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 134 (514)
++......+++.+|++|+|+|++++.+.+... +...+... ++|+++|+||+|+...
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~--~~~~~~~~--~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTET--VWRQATTY--GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH--HHHHHHHT--TCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHH--HHHHHHHc--CCCEEEEEECCCcccc
Confidence 98888889999999999999999887776655 33445555 8999999999998764
No 304
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.61 E-value=5.9e-15 Score=157.18 Aligned_cols=118 Identities=19% Similarity=0.194 Sum_probs=85.1
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCC----CC------CC-----CCCCcccc---cceeCCeeEEEEEeCCCCc
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPA----NV------PP-----VLPPTRLP---EDFYPDRVPITIIDTPSSV 74 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~----~~------~~-----~~~~tt~~---~~~~~~~~~~~l~Dt~G~~ 74 (514)
..+..+|+|+|++|+|||||+|+|+...... .+ .. ...+.|+. ..+...++.+.||||||+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 3567899999999999999999998421100 00 00 01223322 2334457899999999999
Q ss_pred cchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc
Q 010254 75 EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 75 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 134 (514)
++......+++.+|++|+|+|++++.+.+.... |. .+... ++|+++|+||+|+...
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~-~~~~~--~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WR-QAEKY--KVPRIAFANKMDKTGA 144 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HH-HHHHT--TCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHH-HH-HHHHc--CCCEEEEEECCCcccC
Confidence 988888999999999999999999888776652 44 44444 8999999999998754
No 305
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.60 E-value=7.1e-16 Score=160.68 Aligned_cols=139 Identities=14% Similarity=0.150 Sum_probs=100.0
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEE------EECC--CCcEEEEEEecCChhHHHhhhcC
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNV------VDQP--GGTKKTVVLREIPEEAVAKLLSN 437 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~i~dt~g~~~~~~~~~~ 437 (514)
....+||+++|.+|||||||+++|++..+...+.++.+..+..+. +.+. +....+.+||++|++.+....
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~-- 115 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH-- 115 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC--
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH--
Confidence 345699999999999999999999999988777777777666442 2222 235678899999998887665
Q ss_pred ccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-cchhhHHHHHHHcCCccc
Q 010254 438 KDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 438 ~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 513 (514)
...++.+|++|+|||+++. +....|+..+.... ++.|+++|+||+|+...+ +..++.++++..++++++
T Consensus 116 ~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~----~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 185 (535)
T 3dpu_A 116 QFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG----GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFH 185 (535)
T ss_dssp HHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS----SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEE
T ss_pred HHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC----CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceE
Confidence 5678899999999999754 55677888877764 269999999999998654 456677788888777654
No 306
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.60 E-value=2.7e-15 Score=155.50 Aligned_cols=119 Identities=26% Similarity=0.252 Sum_probs=84.9
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccccee-CC------------------------------
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFY-PD------------------------------ 61 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~-~~------------------------------ 61 (514)
.....+|+|+|.+|||||||+|+|++.++....++..++|+....+. ..
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 34578999999999999999999999986432333344443211000 00
Q ss_pred e-----------eEEEEEeCCCCcc-----------chhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCC
Q 010254 62 R-----------VPITIIDTPSSVE-----------DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVK 119 (514)
Q Consensus 62 ~-----------~~~~l~Dt~G~~~-----------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~ 119 (514)
+ ..+.||||||+.. +......++..+|++|+|+|+++........ .|+..+... +
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~-~~l~~l~~~--~ 218 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFS-EAIGALRGH--E 218 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHH-HHHHHTTTC--G
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHH-HHHHHHHhc--C
Confidence 0 3689999999875 3345567789999999999998754444333 377777655 6
Q ss_pred CcEEEEEecccCccc
Q 010254 120 VPVIVVGCKLDLRDE 134 (514)
Q Consensus 120 ~pvilv~NK~Dl~~~ 134 (514)
.|+++|+||+|+.+.
T Consensus 219 ~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 DKIRVVLNKADMVET 233 (550)
T ss_dssp GGEEEEEECGGGSCH
T ss_pred CCEEEEEECCCccCH
Confidence 899999999999865
No 307
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.59 E-value=1.4e-15 Score=144.45 Aligned_cols=133 Identities=17% Similarity=0.111 Sum_probs=96.8
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHh------hhcCcccc-
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAK------LLSNKDSL- 441 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~------~~~~~~~~- 441 (514)
.++|+++|++|||||||+|+|++..+.....++.+.......+... + ..+.+|||+|...+.. +. ..++
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~-~-~~~~l~DtpG~~~~~~~~~~~~~~--~~~~~ 78 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYR-E-KEFLVVDLPGIYSLTAHSIDELIA--RNFIL 78 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEET-T-EEEEEEECCCCSCCCSSCHHHHHH--HHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEEC-C-ceEEEEeCCCccccccCCHHHHHH--HHhhh
Confidence 4799999999999999999999998755555666666665566554 3 4577999999765433 22 2233
Q ss_pred -ccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 442 -AACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 442 -~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
.++|++++|+|+++.+ ....|...+.... ..|+++|+||+|+...+.......++++.++++++
T Consensus 79 ~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~ 143 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLM---RNLFLTLELFEME-----VKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVI 143 (271)
T ss_dssp TTCCSEEEEEEEGGGHH---HHHHHHHHHHHTT-----CCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEE
T ss_pred ccCCcEEEEEecCCcch---hhHHHHHHHHhcC-----CCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEE
Confidence 6899999999998763 3334444554442 39999999999987655444458889999998765
No 308
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.58 E-value=7.8e-15 Score=136.57 Aligned_cols=137 Identities=13% Similarity=0.096 Sum_probs=86.2
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCC--CCCccEEEEEEECCCCcEEEEEEecCC-----------hhHHHh
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTP--TTDERYAVNVVDQPGGTKKTVVLREIP-----------EEAVAK 433 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~dt~g-----------~~~~~~ 433 (514)
...+||+++|++|||||||+|+|++..+.....+ +.+.......+... ...+.+|||+| .+.+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK--ETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET--TEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC--CceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 4568999999999999999999999988655544 34444444445444 35667899999 334443
Q ss_pred hhcCccccccCcEEEEEEeCCChhh--HHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc-c------hhhHHHH
Q 010254 434 LLSNKDSLAACDIAVFVHDSSDESS--WKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM-A------IQDSTRV 504 (514)
Q Consensus 434 ~~~~~~~~~~~d~vilv~D~~~~~s--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~------~~~~~~~ 504 (514)
.. ...++++|++++|+|+++... ...+..+...+.... ..|+++|+||+|+...+. . ....+++
T Consensus 105 ~~--~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~-----~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l 177 (239)
T 3lxx_A 105 CI--LLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERA-----RSFMILIFTRKDDLGDTNLHDYLREAPEDIQDL 177 (239)
T ss_dssp HH--HHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHH-----GGGEEEEEECGGGC------------CHHHHHH
T ss_pred HH--HhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhc-----cceEEEEEeCCccCCcccHHHHHHhchHHHHHH
Confidence 33 345678999999999976433 222222222222221 469999999999865431 1 2356777
Q ss_pred HHHcCCcc
Q 010254 505 FTFLVMVL 512 (514)
Q Consensus 505 ~~~~~~~~ 512 (514)
+++++..|
T Consensus 178 ~~~~~~~~ 185 (239)
T 3lxx_A 178 MDIFGDRY 185 (239)
T ss_dssp HHHHSSSE
T ss_pred HHHcCCEE
Confidence 77777554
No 309
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.58 E-value=1.2e-14 Score=137.74 Aligned_cols=100 Identities=18% Similarity=0.134 Sum_probs=64.5
Q ss_pred EEeCCCCc-cchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhH
Q 010254 67 IIDTPSSV-EDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMM 145 (514)
Q Consensus 67 l~Dt~G~~-~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~ 145 (514)
|-..||+. .....+...++++|+|+.|+|+.++.+..+.. +...+ .++|+++|+||+|+.+. +..+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~--l~~~l----~~kp~ilVlNK~DL~~~-------~~~~ 69 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPM--IEDIL----KNKPRIMLLNKADKADA-------AVTQ 69 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHH--HHHHC----SSSCEEEEEECGGGSCH-------HHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHH--HHHHH----CCCCEEEEEECcccCCH-------HHHH
Confidence 45678875 34456677899999999999999987765311 22222 37999999999999864 1122
Q ss_pred HHHHHHhc-cCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHh
Q 010254 146 PIMQQFRE-IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKL 191 (514)
Q Consensus 146 ~~~~~~~~-~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~ 191 (514)
.+.+.+.. ..+++.+||+++. |+++|.+.+.+.+
T Consensus 70 ~~~~~~~~~g~~~i~iSA~~~~------------gi~~L~~~i~~~l 104 (282)
T 1puj_A 70 QWKEHFENQGIRSLSINSVNGQ------------GLNQIVPASKEIL 104 (282)
T ss_dssp HHHHHHHTTTCCEEECCTTTCT------------TGGGHHHHHHHHH
T ss_pred HHHHHHHhcCCcEEEEECCCcc------------cHHHHHHHHHHHH
Confidence 23333321 1278999999998 8888877766543
No 310
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.58 E-value=4.7e-15 Score=150.61 Aligned_cols=121 Identities=21% Similarity=0.183 Sum_probs=70.3
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCC-CCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhh------cCccc
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-PTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLL------SNKDS 440 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~------~~~~~ 440 (514)
..++|+++|++|||||||+|+|++.++..+.. ++++.+.....+.+. + ..+.+|||+|.+.+.... ....+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~-g-~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHD-K-TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEET-T-EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC-C-eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 45899999999999999999999987654443 333434444555554 3 567799999987655332 23567
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 010254 441 LAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 495 (514)
Q Consensus 441 ~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 495 (514)
++.+|++++|+|++++.+++.+..+..-+.... +.|+++|+||+|+....
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-----~~piIvV~NK~Dl~~~~ 359 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP-----AAKFLTVANKLDRAANA 359 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-----TSEEEEEEECTTSCTTT
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-----CCCEEEEEECcCCCCcc
Confidence 899999999999999887764433333333332 58999999999997644
No 311
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.58 E-value=7.9e-15 Score=131.73 Aligned_cols=131 Identities=17% Similarity=0.161 Sum_probs=86.9
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCC----------hhHHHhhhc
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIP----------EEAVAKLLS 436 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g----------~~~~~~~~~ 436 (514)
...+||+++|++|||||||+|+|++..+.... ++.+++......... . .+.+|||+| .+.+..+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~t~~~~~~~~~-~--~~~i~Dt~G~~~~~~~~~~~~~~~~~~- 95 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVS-KTPGKTRSINFYLVN-S--KYYFVDLPGYGYAKVSKKERMLWKRLV- 95 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCC-SSCCCCCCEEEEEET-T--TEEEEECCCBSSSCCCHHHHHHHHHHH-
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccccc-CCCCCccCeEEEEEC-C--cEEEEECCCCccccCChhhHHHHHHHH-
Confidence 45579999999999999999999999855444 343433333333333 2 355899999 66676655
Q ss_pred Ccccccc---CcEEEEEEeCCChhhH--HHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc---cchhhHHHHHHHc
Q 010254 437 NKDSLAA---CDIAVFVHDSSDESSW--KRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA---MAIQDSTRVFTFL 508 (514)
Q Consensus 437 ~~~~~~~---~d~vilv~D~~~~~s~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~ 508 (514)
..+++. +|++++|+|+++..+. ..+..|+... +.|+++|+||+|+.... ...++..+++..+
T Consensus 96 -~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~---------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~ 165 (195)
T 3pqc_A 96 -EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL---------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY 165 (195)
T ss_dssp -HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT---------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS
T ss_pred -HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc---------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc
Confidence 344444 4999999999876333 3333343322 59999999999997543 2345566666653
Q ss_pred C-Ccc
Q 010254 509 V-MVL 512 (514)
Q Consensus 509 ~-~~~ 512 (514)
+ +++
T Consensus 166 ~~~~~ 170 (195)
T 3pqc_A 166 GEYTI 170 (195)
T ss_dssp CCSCE
T ss_pred CCCce
Confidence 3 344
No 312
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.58 E-value=2.3e-15 Score=148.84 Aligned_cols=144 Identities=17% Similarity=0.243 Sum_probs=90.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC--Cc-----------c-----------------------------
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLP--PT-----------R----------------------------- 53 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~--~t-----------t----------------------------- 53 (514)
-.+|+|+|++|||||||+|+|++..+......... .+ .
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 34999999999999999999999876322111000 00 0
Q ss_pred ------------cccc-eeCCeeEEEEEeCCCCccc-------------hhhHHHhhhccCEEEEEEeCCCcccHHHHHH
Q 010254 54 ------------LPED-FYPDRVPITIIDTPSSVED-------------RGKLGEELRRADAVVLTYACDRPETLDELST 107 (514)
Q Consensus 54 ------------~~~~-~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~ 107 (514)
+... .......+.+|||||+... ......+++++|++|+|+|..+......
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~--- 190 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS--- 190 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC---
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH---
Confidence 0000 1123457899999998775 4456778999999999998765433322
Q ss_pred HHHHHHHhcC-CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEcCccccc
Q 010254 108 FWLPELRRLE-VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIECSALKQI 166 (514)
Q Consensus 108 ~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~ 166 (514)
.|+..++... .+.|+|+|+||+|+.+.. ....+ ........++ .+++++|++++.
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~-~~~~~-~~~~~~~~~~--~~~~~v~~~s~~ 246 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKG-TDAVE-ILEGRSFKLK--YPWVGVVNRSQA 246 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTT-CCSHH-HHTTSSSCCS--SCCEEECCCCHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCc-ccHHH-HHcCcccccc--CCeEEEEECChH
Confidence 1555555443 368999999999998651 11111 1111111111 278999999998
No 313
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.57 E-value=3.6e-14 Score=151.28 Aligned_cols=118 Identities=19% Similarity=0.108 Sum_probs=84.3
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCC--CCCC--C------CCC-----CCCcccc---cceeCCe-------eEEEE
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADT--FPAN--V------PPV-----LPPTRLP---EDFYPDR-------VPITI 67 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~--~~~~--~------~~~-----~~~tt~~---~~~~~~~-------~~~~l 67 (514)
..+..+|+|+|++|+|||||+++|+... +... + ... ..+.|+. ..+...+ +.+.|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 3456899999999999999999997532 1110 0 000 1222321 1222333 88999
Q ss_pred EeCCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc
Q 010254 68 IDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 68 ~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 134 (514)
|||||+.++...+..+++.+|++|+|+|++++...+... +...+... ++|+++|+||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~--~~~~~~~~--~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET--VWRQANKY--KVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH--HHHHHHHc--CCCEEEEEeCCCcccc
Confidence 999999998888889999999999999999876655543 33444444 7999999999998754
No 314
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.57 E-value=5.1e-15 Score=136.24 Aligned_cols=119 Identities=13% Similarity=0.023 Sum_probs=79.1
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCC-CCCCC-CCCCccEEEEEEECCCCcEEEEEEecCC----------hhHHHhh
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPF-SDNYT-PTTDERYAVNVVDQPGGTKKTVVLREIP----------EEAVAKL 434 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~dt~g----------~~~~~~~ 434 (514)
...++|+++|.+|||||||+|+|++..+ ..... +..+.......+... +...+.+|||+| .+.+..+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPA-AEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCT-TSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCC-CCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 3468999999999999999999999874 23332 222333333333323 456677999999 4555544
Q ss_pred hcCccccc---cCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 010254 435 LSNKDSLA---ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 495 (514)
Q Consensus 435 ~~~~~~~~---~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 495 (514)
. ..+++ .+|++++|+|+++..+. ....++..+... ++|+++|+||+|+...+
T Consensus 106 ~--~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~~------~~p~i~v~nK~Dl~~~~ 160 (223)
T 4dhe_A 106 L--SSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAPT------GKPIHSLLTKCDKLTRQ 160 (223)
T ss_dssp H--HHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGGG------CCCEEEEEECGGGSCHH
T ss_pred H--HHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHhc------CCCEEEEEeccccCChh
Confidence 4 23333 48899999999976331 123344444442 69999999999997644
No 315
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.56 E-value=1.5e-15 Score=149.66 Aligned_cols=154 Identities=17% Similarity=0.187 Sum_probs=92.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCCC----------------------cccc--------------
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPAN---VPPVLPP----------------------TRLP-------------- 55 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~---~~~~~~~----------------------tt~~-------------- 55 (514)
...+|+|+|++|||||||+|+|++.++... +.+..++ ++..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 357999999999999999999999886422 2222232 2211
Q ss_pred ---c---------c-eeCCeeEEEEEeCCCCcc-------------chhhHHHhhhccC-EEEEEEeCCCcccHHHHHHH
Q 010254 56 ---E---------D-FYPDRVPITIIDTPSSVE-------------DRGKLGEELRRAD-AVVLTYACDRPETLDELSTF 108 (514)
Q Consensus 56 ---~---------~-~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~ad-~ii~v~d~~~~~s~~~~~~~ 108 (514)
. . +......+.||||||+.. .......++..++ ++++|+|++....-.+.. .
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~-~ 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-K 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH-H
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH-H
Confidence 0 0 112246799999999753 2234456666655 555566655432222211 1
Q ss_pred HHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHH-H-Hh---ccCcEEEcCccccccceecCCCCChhhHHHH
Q 010254 109 WLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQ-Q-FR---EIETCIECSALKQIQVKCFNSPLQPSEIVGV 183 (514)
Q Consensus 109 ~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~-~-~~---~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L 183 (514)
++..+... +.|+++|+||+|+.+.... ...+.+ . +. ...+++++||+++. |+++|
T Consensus 189 i~~~~~~~--~~~~i~V~NK~Dl~~~~~~------~~~~~~~~~~~l~~~~~~v~~~SA~~~~------------~i~~l 248 (353)
T 2x2e_A 189 VAKEVDPQ--GQRTIGVITKLDLMDEGTD------ARDVLENKLLPLRRGYIGVVNRSQKDID------------GKKDI 248 (353)
T ss_dssp HHHHHCTT--CTTEEEEEECGGGSCTTCC------CHHHHTTCSSCCTTCEEECCCCCHHHHH------------TTCCH
T ss_pred HHHHhCcC--CCceEEEeccccccCcchh------HHHHHhCCcccccCCceEEEeCCccccc------------ccccH
Confidence 44444433 7999999999999764210 011111 0 00 11257889999999 66666
Q ss_pred HHHHHH
Q 010254 184 KRVVQE 189 (514)
Q Consensus 184 ~~~i~~ 189 (514)
.+.+.+
T Consensus 249 ~~~l~~ 254 (353)
T 2x2e_A 249 TAALAA 254 (353)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 316
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.56 E-value=6.7e-15 Score=143.14 Aligned_cols=135 Identities=19% Similarity=0.083 Sum_probs=96.7
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHH----hhh-cCccccccC
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA----KLL-SNKDSLAAC 444 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~----~~~-~~~~~~~~~ 444 (514)
.+|+++|.+|||||||+|+|++........+..+.......+.++ +...+.+|||+|..+.. .+. .....++++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~-~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeC-CCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 368999999999999999999887544333444444445566666 44567899999964321 111 002345679
Q ss_pred cEEEEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcC
Q 010254 445 DIAVFVHDSSD---ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV 509 (514)
Q Consensus 445 d~vilv~D~~~---~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 509 (514)
|++|+|+|+++ +.+++.+..|+.++..+.... .++|+++|+||+|+...+ +..+++++.++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l-~~~p~ilV~NK~Dl~~~~---e~~~~l~~~l~ 301 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRL-TERPQIIVANKMDMPEAA---ENLEAFKEKLT 301 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSST-TTSCBCBEEECTTSTTHH---HHHHHHHHHCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhh-cCCCEEEEEECccCCCCH---HHHHHHHHHhh
Confidence 99999999998 788999999999988764321 279999999999997642 34566777665
No 317
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.55 E-value=1.5e-14 Score=139.00 Aligned_cols=132 Identities=17% Similarity=0.254 Sum_probs=89.5
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChh-HHHh-----h-hcCccccc
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEE-AVAK-----L-LSNKDSLA 442 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~-~~~~-----~-~~~~~~~~ 442 (514)
.+|+++|++|||||||+|+|++..+..++..+.+++.....+... +...+.+|||+|.. .... + ......++
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~ 87 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIG 87 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE-CCeeEEEEECcCCCccchhhHHHHHHHHHHHHHh
Confidence 479999999999999999999998765554443444333322222 44567789999986 3211 1 12357789
Q ss_pred cCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc-ccchhhHHHHHHHcCC
Q 010254 443 ACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF-AMAIQDSTRVFTFLVM 510 (514)
Q Consensus 443 ~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~ 510 (514)
.+|++++|+|+++ +.....|+....... +.|+++|+||+|+... ........++++.+++
T Consensus 88 ~~D~vl~Vvd~~~---~~~~~~~i~~~l~~~-----~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~ 148 (301)
T 1ega_A 88 DVELVIFVVEGTR---WTPDDEMVLNKLREG-----KAPVILAVNKVDNVQEKADLLPHLQFLASQMNF 148 (301)
T ss_dssp CEEEEEEEEETTC---CCHHHHHHHHHHHSS-----SSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCC
T ss_pred cCCEEEEEEeCCC---CCHHHHHHHHHHHhc-----CCCEEEEEECcccCccHHHHHHHHHHHHHhcCc
Confidence 9999999999976 334445554443332 6999999999999862 2334556667666664
No 318
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.53 E-value=8.1e-15 Score=144.37 Aligned_cols=107 Identities=13% Similarity=0.076 Sum_probs=73.2
Q ss_pred CeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhH
Q 010254 61 DRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSL 140 (514)
Q Consensus 61 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~ 140 (514)
.++.+.||||||+... ....+..+|++++|+|.......+.+. ..+ .++|+++|+||+|+... ...
T Consensus 170 ~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~----~~~p~ivVlNK~Dl~~~---~~~ 235 (355)
T 3p32_A 170 AGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK----KGV----LELADIVVVNKADGEHH---KEA 235 (355)
T ss_dssp TTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC----TTS----GGGCSEEEEECCCGGGH---HHH
T ss_pred CCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH----HhH----hhcCCEEEEECCCCcCh---hHH
Confidence 4688999999997643 234468999999999987655443221 111 14699999999998754 111
Q ss_pred hhhhHHHHHHH---h----c-cCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 141 EQVMMPIMQQF---R----E-IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 141 ~~~~~~~~~~~---~----~-~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
......+...+ . . ..++++|||++|. |+++|++.|.+.++.
T Consensus 236 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~------------Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 236 RLAARELSAAIRLIYPREALWRPPVLTMSAVEGR------------GLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTB------------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccCCCCceEEEEcCCCC------------CHHHHHHHHHHHHHH
Confidence 22222333322 1 1 1379999999999 999999999988765
No 319
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.53 E-value=9.4e-14 Score=138.15 Aligned_cols=154 Identities=19% Similarity=0.263 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeCC-eeEEEEEeCCCCccchh-------hHHHhhh
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYPD-RVPITIIDTPSSVEDRG-------KLGEELR 85 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~~-~~~~~l~Dt~G~~~~~~-------~~~~~~~ 85 (514)
-.|+|+|++|||||||+++|++... .+ ...+.+|... .+... ...+.++||||+.+... .....+.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~--~i-~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~e 234 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHP--KI-APYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIA 234 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCC--EE-CCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCc--cc-cCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHH
Confidence 4589999999999999999998753 11 1122233211 22233 37799999999854211 1123356
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc-cCcEEEcC
Q 010254 86 RADAVVLTYACDRPETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE-IETCIECS 161 (514)
Q Consensus 86 ~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~S 161 (514)
.++.+++|+|++ ...+..+.. |...+..+. ...|.++|+||+|+... . ....+.+.+.. -.+++.+|
T Consensus 235 ra~~lL~vvDls-~~~~~~ls~-g~~el~~la~aL~~~P~ILVlNKlDl~~~---~----~~~~l~~~l~~~g~~vi~iS 305 (416)
T 1udx_A 235 RTRVLLYVLDAA-DEPLKTLET-LRKEVGAYDPALLRRPSLVALNKVDLLEE---E----AVKALADALAREGLAVLPVS 305 (416)
T ss_dssp SSSEEEEEEETT-SCHHHHHHH-HHHHHHHHCHHHHHSCEEEEEECCTTSCH---H----HHHHHHHHHHTTTSCEEECC
T ss_pred HHHhhhEEeCCc-cCCHHHHHH-HHHHHHHHhHHhhcCCEEEEEECCChhhH---H----HHHHHHHHHHhcCCeEEEEE
Confidence 799999999998 555666654 666555442 25899999999998753 1 11222222221 12799999
Q ss_pred ccccccceecCCCCChhhHHHHHHHHHHHhcCc
Q 010254 162 ALKQIQVKCFNSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 162 a~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
|+++. |+++|++.|.+.+...
T Consensus 306 A~~g~------------gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 306 ALTGA------------GLPALKEALHALVRST 326 (416)
T ss_dssp TTTCT------------THHHHHHHHHHHHHTS
T ss_pred CCCcc------------CHHHHHHHHHHHHHhc
Confidence 99999 9999999999887653
No 320
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.51 E-value=5.7e-14 Score=134.83 Aligned_cols=108 Identities=19% Similarity=0.136 Sum_probs=75.9
Q ss_pred CeeEEEEEe-CCC-----CccchhhHHHhhhccCEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCCCcEEEEEecccCcc
Q 010254 61 DRVPITIID-TPS-----SVEDRGKLGEELRRADAVVLTYACDRPE-TLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD 133 (514)
Q Consensus 61 ~~~~~~l~D-t~G-----~~~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~ 133 (514)
+.+.+.++| +.| ++++....+.+++++|++++|+|++++. ++..++. |+..+... ++|+++|+||+|+.+
T Consensus 48 D~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~-~l~~~~~~--~~~~ilV~NK~DL~~ 124 (302)
T 2yv5_A 48 DYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDN-MLVVYEYF--KVEPVIVFNKIDLLN 124 (302)
T ss_dssp CEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHH-HHHHHHHT--TCEEEEEECCGGGCC
T ss_pred eEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHH-HHHHHHhC--CCCEEEEEEcccCCC
Confidence 345555555 433 4555556667899999999999999886 7777665 88777765 899999999999986
Q ss_pred cccchhHhhhhHHHHHHHhccCcEEEcCccccccceecCCCCChhhHHHHHHH
Q 010254 134 ENQQVSLEQVMMPIMQQFREIETCIECSALKQIQVKCFNSPLQPSEIVGVKRV 186 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~ 186 (514)
. +.....+....+++.++. +++++||++|. |+++|++.
T Consensus 125 ~-~~v~~~~~~~~~~~~~g~--~~~~~SA~~g~------------gi~~L~~~ 162 (302)
T 2yv5_A 125 E-EEKKELERWISIYRDAGY--DVLKVSAKTGE------------GIDELVDY 162 (302)
T ss_dssp H-HHHHHHHHHHHHHHHTTC--EEEECCTTTCT------------THHHHHHH
T ss_pred c-cccHHHHHHHHHHHHCCC--eEEEEECCCCC------------CHHHHHhh
Confidence 5 211111222334444432 79999999999 88877543
No 321
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.51 E-value=2.6e-13 Score=140.44 Aligned_cols=115 Identities=12% Similarity=0.055 Sum_probs=84.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC-------------CC-CCC-----CCCCCcc---cccceeCCeeEEEEEeCCCC
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTF-------------PA-NVP-----PVLPPTR---LPEDFYPDRVPITIIDTPSS 73 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~-------------~~-~~~-----~~~~~tt---~~~~~~~~~~~~~l~Dt~G~ 73 (514)
.=+|+|+|..++|||||..+|+...- .. .+. ....+.| ....+.++++.++|+||||+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 45899999999999999999962110 00 000 0111222 22345577899999999999
Q ss_pred ccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc
Q 010254 74 VEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 74 ~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 134 (514)
.+|.......++-+|++|+|+|+..+...+... ....+.+. ++|+++++||+|....
T Consensus 111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~--v~~~a~~~--~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK--LMDVCRMR--ATPVMTFVNKMDREAL 167 (548)
T ss_dssp GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHH--HHHHHHHT--TCCEEEEEECTTSCCC
T ss_pred HHHHHHHHHHHHhcCceEEEeecCCCcccccHH--HHHHHHHh--CCceEEEEecccchhc
Confidence 999999999999999999999999887766654 44555555 8999999999998654
No 322
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.51 E-value=1.4e-14 Score=141.84 Aligned_cols=151 Identities=18% Similarity=0.171 Sum_probs=92.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhc------CCCCCCCCCCCC-------------------------------------
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAA------DTFPANVPPVLP------------------------------------- 50 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~------~~~~~~~~~~~~------------------------------------- 50 (514)
..+..|+|+|++|+|||||+|.|.+ .+. .+....+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v--~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~ 131 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV--AVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLG 131 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCE--EEEEECCC---------------CTTTTCTTEEEEEECC-----
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE--EEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccc
Confidence 4578999999999999999999963 110 0000000
Q ss_pred Cccc---cc--ceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEE
Q 010254 51 PTRL---PE--DFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVV 125 (514)
Q Consensus 51 ~tt~---~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv 125 (514)
+++. .. .+...++.+.|+||||+.+... .....+|++++|+|++.+..++.+. ... . ++|+++|
T Consensus 132 g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~----~~~--~--~~p~ivv 200 (341)
T 2p67_A 132 GASQRARELMLLCEAAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIK----KGL--M--EVADLIV 200 (341)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCC----HHH--H--HHCSEEE
T ss_pred hhHHHHHHHHHHhhccCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHH----Hhh--h--cccCEEE
Confidence 1100 00 1113467899999999876543 2468999999999987553322111 011 1 4688999
Q ss_pred EecccCcccccchhHhhhhHHHHH---HHhc-----cCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 126 GCKLDLRDENQQVSLEQVMMPIMQ---QFRE-----IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 126 ~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~-----~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
+||+|+... .........+.. .+.. ..+++++||++|. |+++|++.|.+.++
T Consensus 201 ~NK~Dl~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~------------gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 201 INKDDGDNH---TNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKR------------GIDEIWHAIIDFKT 260 (341)
T ss_dssp ECCCCTTCH---HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTB------------SHHHHHHHHHHHHH
T ss_pred EECCCCCCh---HHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCC------------CHHHHHHHHHHHHH
Confidence 999999754 111111122222 1111 2368999999999 99999999988765
No 323
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.50 E-value=8.7e-15 Score=146.06 Aligned_cols=136 Identities=15% Similarity=0.113 Sum_probs=91.9
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCC-CCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhc-----Cccc
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-PTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLS-----NKDS 440 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~-----~~~~ 440 (514)
...++|+++|.+|+|||||+|+|++..+..... +..+.+.....+... +...+.+|||+|.+.+..+.. ....
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELH-PIGPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEET-TTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEEC-CCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 345899999999999999999999998754433 344455555666666 445778999999876543321 1346
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 441 LAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 441 ~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
++.+|++++|+|++.. .....|+..+... ++|+++|+||+|+...+.. +..+++++.++++++
T Consensus 111 l~~aD~vllVvD~~~~---~~~~~~l~~l~~~------~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~ 173 (423)
T 3qq5_A 111 FYRADCGILVTDSAPT---PYEDDVVNLFKEM------EIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVL 173 (423)
T ss_dssp HTSCSEEEEECSSSCC---HHHHHHHHHHHHT------TCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCC
T ss_pred HhcCCEEEEEEeCCCh---HHHHHHHHHHHhc------CCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEE
Confidence 7889999999999433 3345666666654 5999999999999875432 556677777777665
No 324
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.49 E-value=5.5e-14 Score=131.20 Aligned_cols=141 Identities=11% Similarity=-0.004 Sum_probs=82.8
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCC--CCccEEEEEEECCCCcEEEEEEecCCh--------hHH-Hhhh
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPT--TDERYAVNVVDQPGGTKKTVVLREIPE--------EAV-AKLL 435 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~dt~g~--------~~~-~~~~ 435 (514)
...++|+++|.+|||||||+|+|++........++ .+.......+.. +...+.+|||+|. +.+ ..+.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~--~~~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW--DKCHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE--TTEEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE--CCcEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 45699999999999999999999999876655443 222233333333 3456778999994 222 1111
Q ss_pred cC-ccccccCcEEEEEEeCCChhhH-HHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccc-------hhhHHHHHH
Q 010254 436 SN-KDSLAACDIAVFVHDSSDESSW-KRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMA-------IQDSTRVFT 506 (514)
Q Consensus 436 ~~-~~~~~~~d~vilv~D~~~~~s~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-------~~~~~~~~~ 506 (514)
.. ....+++|++++|+|+++.... ..+..++..+.... ..+.|+||++||+|+...... ....+++.+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~---~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGED---VLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGG---GGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChh---hhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHH
Confidence 00 1223899999999999853111 12233343332211 115899999999999753211 133566777
Q ss_pred HcCCcc
Q 010254 507 FLVMVL 512 (514)
Q Consensus 507 ~~~~~~ 512 (514)
+.+..|
T Consensus 174 ~~g~~~ 179 (247)
T 3lxw_A 174 ECGGRV 179 (247)
T ss_dssp HTTTCE
T ss_pred HcCCeE
Confidence 666543
No 325
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.49 E-value=6.8e-13 Score=128.96 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=55.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccccc---ceeCC-----------------eeEEEEEeCCCCcc
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPE---DFYPD-----------------RVPITIIDTPSSVE 75 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~---~~~~~-----------------~~~~~l~Dt~G~~~ 75 (514)
+++|+|+|.||||||||+|+|++..+. +...+.+|+.. .+... ...+.+|||||+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~---v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIE---AANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVA 78 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC---------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCc---ccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence 579999999999999999999997631 22223333221 11111 25799999999986
Q ss_pred chh-------hHHHhhhccCEEEEEEeCCC
Q 010254 76 DRG-------KLGEELRRADAVVLTYACDR 98 (514)
Q Consensus 76 ~~~-------~~~~~~~~ad~ii~v~d~~~ 98 (514)
+.. .....++++|++++|+|+++
T Consensus 79 ~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 79 GASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp THHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 532 12346899999999999986
No 326
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.48 E-value=5.2e-13 Score=131.66 Aligned_cols=140 Identities=14% Similarity=0.093 Sum_probs=96.6
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhh-------hcCcc
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKL-------LSNKD 439 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~-------~~~~~ 439 (514)
...++|+++|.+|||||||+|+|++........+..+.......+... .....+|||+|....... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 456899999999999999999999987543333444444444444333 456778999996332100 00012
Q ss_pred ccccCcEEEEEEeCCChh--hHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCccc
Q 010254 440 SLAACDIAVFVHDSSDES--SWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 440 ~~~~~d~vilv~D~~~~~--s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 513 (514)
....+|++++|+|+++.. +++....|+..+..... +.|+++|+||+|+..... ..+..++++..+++++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~----~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~ 313 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK----DLPFLVVINKIDVADEEN-IKRLEKFVKEKGLNPI 313 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT----TSCEEEEECCTTTCCHHH-HHHHHHHHHHTTCCCE
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC----CCCEEEEEECcccCChHH-HHHHHHHHHhcCCCeE
Confidence 335699999999999876 68888888888776431 699999999999986432 2445566666676654
No 327
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.47 E-value=4.1e-14 Score=149.42 Aligned_cols=152 Identities=18% Similarity=0.156 Sum_probs=98.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccc---------------------------------------
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLP--------------------------------------- 55 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~--------------------------------------- 55 (514)
.-.+|+|+|.+|+|||||+|+|++.++...-. ...|..+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~--g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS--GIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSS--SCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCC--ccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 45799999999999999999999987622110 0111000
Q ss_pred --------------c-ceeCCeeEEEEEeCCCCccch-------------hhHHHhh-hccCEEEEEEeCCCcccHHHHH
Q 010254 56 --------------E-DFYPDRVPITIIDTPSSVEDR-------------GKLGEEL-RRADAVVLTYACDRPETLDELS 106 (514)
Q Consensus 56 --------------~-~~~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~-~~ad~ii~v~d~~~~~s~~~~~ 106 (514)
. .+......+.|+||||+.... ..+..++ ..+|++++|+|++...+..+..
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 0 011234468899999986521 1233444 5889999999998765544432
Q ss_pred HHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHH-H-H---hccCcEEEcCccccccceecCCCCChhhHH
Q 010254 107 TFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQ-Q-F---REIETCIECSALKQIQVKCFNSPLQPSEIV 181 (514)
Q Consensus 107 ~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~-~-~---~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~ 181 (514)
.++..+... +.|+|+|+||+|+.+.... ...+.. . + ....+++.+||++|. |++
T Consensus 208 -~ll~~L~~~--g~pvIlVlNKiDlv~~~~~------~~~il~~~~~~l~lg~~~VV~iSA~~G~------------Gvd 266 (772)
T 3zvr_A 208 -KIAKEVDPQ--GQRTIGVITKLDLMDEGTD------ARDVLENKLLPLRRGYIGVVNRSQKDID------------GKK 266 (772)
T ss_dssp -HHHHHHCTT--CSSEEEEEECTTSSCTTCC------SHHHHTTCSSCCSSCEEECCCCCCEESS------------SSE
T ss_pred -HHHHHHHhc--CCCEEEEEeCcccCCcchh------hHHHHHHHhhhhhccCCceEEecccccc------------cch
Confidence 266666655 7999999999999865211 111111 0 0 012267889999999 777
Q ss_pred HHHHHHHH
Q 010254 182 GVKRVVQE 189 (514)
Q Consensus 182 ~L~~~i~~ 189 (514)
+|.+.|.+
T Consensus 267 eL~eaI~~ 274 (772)
T 3zvr_A 267 DITAALAA 274 (772)
T ss_dssp EHHHHHHH
T ss_pred hHHHHHHH
Confidence 77777765
No 328
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.47 E-value=6.4e-14 Score=139.47 Aligned_cols=162 Identities=19% Similarity=0.202 Sum_probs=78.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCC---CCCCcc----ccccee--CCeeEEEEEeCCCCccchh------
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPAN-VPP---VLPPTR----LPEDFY--PDRVPITIIDTPSSVEDRG------ 78 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~-~~~---~~~~tt----~~~~~~--~~~~~~~l~Dt~G~~~~~~------ 78 (514)
-.++|+|+|++|||||||+|+|++..+... ... ....++ +...+. .-...+++|||+|+.....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 347899999999999999999999875221 110 001111 111111 1234789999999875421
Q ss_pred -h-------H-----------HHhhhccCEEEEEEeCCCc-ccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccch
Q 010254 79 -K-------L-----------GEELRRADAVVLTYACDRP-ETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQV 138 (514)
Q Consensus 79 -~-------~-----------~~~~~~ad~ii~v~d~~~~-~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~ 138 (514)
. . ..++.++++.+++|+.... .++...+..|+..+.. +.|+|+|+||+|+.......
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~---~v~iIlVinK~Dll~~~ev~ 186 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEECQ 186 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT---TSEEEEEEESTTSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc---cCcEEEEEEcccCccHHHHH
Confidence 0 0 1123445544444443332 3555555447777753 79999999999997652211
Q ss_pred hHhhhhHHHHHHHhccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 139 SLEQVMMPIMQQFREIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
...+.+...+...+. +++++||+++. +++++...+.+.+|-
T Consensus 187 ~~k~~i~~~~~~~~i--~~~~~sa~~~~------------~v~~~~~~l~~~iPf 227 (418)
T 2qag_C 187 QFKKQIMKEIQEHKI--KIYEFPETDDE------------EENKLVKKIKDRLPL 227 (418)
T ss_dssp HHHHHHHHHHHHHTC--CCCCCC-----------------------------CCE
T ss_pred HHHHHHHHHHHHcCC--eEEeCCCCCCc------------CHHHHHHHHHhhCCc
Confidence 222333444444432 78999999998 666666666666654
No 329
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.47 E-value=5.4e-13 Score=128.46 Aligned_cols=75 Identities=15% Similarity=0.168 Sum_probs=61.1
Q ss_pred eCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCC----------CcccHHHHHHHHHHHHHhc--CCCCcEEEEE
Q 010254 59 YPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACD----------RPETLDELSTFWLPELRRL--EVKVPVIVVG 126 (514)
Q Consensus 59 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~----------~~~s~~~~~~~~~~~l~~~--~~~~pvilv~ 126 (514)
..+++.+.+|||+|++.++..+..++++++++|+|||++ +..++.+... |...+... ..+.|++|++
T Consensus 157 ~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~-~~~~i~~~~~~~~~piiLv~ 235 (340)
T 4fid_A 157 VVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIA-VFKDIMTNEFLKGAVKLIFL 235 (340)
T ss_dssp ESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHH-HHHHHHHCGGGTTSEEEEEE
T ss_pred EeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHH-HHHHHhhhhccCCCeEEEEE
Confidence 345788999999999999999999999999999999998 5677777665 44444332 2579999999
Q ss_pred ecccCccc
Q 010254 127 CKLDLRDE 134 (514)
Q Consensus 127 NK~Dl~~~ 134 (514)
||+|+...
T Consensus 236 NK~DL~~e 243 (340)
T 4fid_A 236 NKMDLFEE 243 (340)
T ss_dssp ECHHHHHH
T ss_pred ECchhhhh
Confidence 99998653
No 330
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.47 E-value=2.6e-14 Score=145.22 Aligned_cols=115 Identities=20% Similarity=0.214 Sum_probs=83.4
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCC-CCCCccEEEEEEECCCCcEEEEEEecCChh-HHHhhh------cCcc
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-PTTDERYAVNVVDQPGGTKKTVVLREIPEE-AVAKLL------SNKD 439 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~-~~~~~~------~~~~ 439 (514)
..++|+++|+||||||||+|+|++.++..+.. +.+|.+.....+.+. + ..+.+|||+|.+ .+.... ....
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~-g-~~~~l~DTaG~~~~~~~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR-G-ILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET-T-EEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecC-C-eEEEEEECCCccccchhhHHHHHHHHHHH
Confidence 34899999999999999999999988654443 344444444556665 3 457799999986 432111 1135
Q ss_pred ccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 440 SLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 440 ~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
+++.+|++++|+|++++.+++.... +..+ . ++|+++|+||+|+..
T Consensus 320 ~~~~aD~vl~VvD~s~~~s~~~~~i-l~~l---~-----~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLDEEDRKI-LERI---K-----NKRYLVVINKVDVVE 364 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHHH-HHHH---T-----TSSEEEEEEECSSCC
T ss_pred HhhcccEEEEEecCCCCCCHHHHHH-HHHh---c-----CCCEEEEEECccccc
Confidence 7789999999999999877765432 2222 1 589999999999975
No 331
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.46 E-value=4e-13 Score=131.54 Aligned_cols=79 Identities=14% Similarity=0.224 Sum_probs=55.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccce-----e-------------------CCeeEEEEEeCCC
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDF-----Y-------------------PDRVPITIIDTPS 72 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~-----~-------------------~~~~~~~l~Dt~G 72 (514)
++|+|+|.||||||||+|+|++... .....+.+|+.... . ..+..+.+|||||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~---~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpG 78 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANA---LAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAG 78 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHT---TCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---cccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCC
Confidence 5799999999999999999998752 12223333322111 0 0235799999999
Q ss_pred Cccch-------hhHHHhhhccCEEEEEEeCCC
Q 010254 73 SVEDR-------GKLGEELRRADAVVLTYACDR 98 (514)
Q Consensus 73 ~~~~~-------~~~~~~~~~ad~ii~v~d~~~ 98 (514)
+..+. ......++++|++++|+|+++
T Consensus 79 l~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 79 LVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 97642 123346899999999999975
No 332
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.46 E-value=6e-13 Score=130.73 Aligned_cols=116 Identities=17% Similarity=0.098 Sum_probs=78.9
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCCh---------hHHHhhhcCcccc
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPE---------EAVAKLLSNKDSL 441 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~---------~~~~~~~~~~~~~ 441 (514)
.|+++|++|||||||+|+|++..+.....+..|.+.....+.++ + ..+.+|||+|. +.+.+.. ..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~-g-~~v~l~DT~G~i~~lp~~lve~f~~tl---~~~ 255 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPIN-N-RKIMLVDTVGFIRGIPPQIVDAFFVTL---SEA 255 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEET-T-EEEEEEECCCBCSSCCGGGHHHHHHHH---HGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEEC-C-EEEEEEeCCCchhcCCHHHHHHHHHHH---HHH
Confidence 49999999999999999999988643333444444555667776 4 45678999995 3454433 467
Q ss_pred ccCcEEEEEEeCCChh--hHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 442 AACDIAVFVHDSSDES--SWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 442 ~~~d~vilv~D~~~~~--s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
..+|++++|+|++++. +.+.+..|...+..... .+.|+++|+||+|+...
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~---~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGV---SGKPILVTLNKIDKING 307 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTC---CSCCEEEEEECGGGCCS
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCc---CCCCEEEEEECCCCCCc
Confidence 8999999999999876 55555555544444321 16899999999998763
No 333
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.45 E-value=1.3e-13 Score=132.33 Aligned_cols=147 Identities=16% Similarity=0.201 Sum_probs=74.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC-CCCCCCCC-----CCCCcc---cccce--eCCeeEEEEEeCCCC-------ccc
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAAD-TFPANVPP-----VLPPTR---LPEDF--YPDRVPITIIDTPSS-------VED 76 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~-~~~~~~~~-----~~~~tt---~~~~~--~~~~~~~~l~Dt~G~-------~~~ 76 (514)
-.++|+|+|++|||||||+|+|.+. .+...... ..++.. +...+ ......+.+|||+|+ +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4589999999999999999999886 33222100 001111 11111 122467999999998 444
Q ss_pred hhhHH-------Hhhhcc-------------CEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccccc
Q 010254 77 RGKLG-------EELRRA-------------DAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQ 136 (514)
Q Consensus 77 ~~~~~-------~~~~~a-------------d~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~ 136 (514)
..... .+++++ ++++++.+.+. .+++.....++..+ ..+.|+++|+||.|+.....
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l---~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH---TTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH---HhcCCEEEEEEeCCCCCHHH
Confidence 43333 444333 34455444322 23555443244333 34689999999999976411
Q ss_pred chhHhhhhHHHHHHHhccCcEEEcCccccccc
Q 010254 137 QVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (514)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~ 168 (514)
.....+....+++.++. +++++||+++ ++
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~e~Sa~~~-~v 201 (301)
T 2qnr_A 173 RERLKKRILDEIEEHNI--KIYHLPDAES-DE 201 (301)
T ss_dssp HHHHHHHHHHHHHHTTC--CCCCCC-------
T ss_pred HHHHHHHHHHHHHHcCC--eEEecCCccc-cc
Confidence 11222344555566543 8999999999 66
No 334
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.44 E-value=9.9e-13 Score=126.24 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=83.7
Q ss_pred CCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCC----------CcccHHHHHHHHHHHHHhc--CCCCcEEEEEe
Q 010254 60 PDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACD----------RPETLDELSTFWLPELRRL--EVKVPVIVVGC 127 (514)
Q Consensus 60 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~----------~~~s~~~~~~~~~~~l~~~--~~~~pvilv~N 127 (514)
.+++.+.+|||+|++.++..+..++++++++|+|||++ +..++.+... |...+... ..+.|++|++|
T Consensus 164 ~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~-~~~~i~~~~~~~~~~iiL~~N 242 (327)
T 3ohm_A 164 LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVILFLN 242 (327)
T ss_dssp ETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHH-HHHHHHTSGGGTTCEEEEEEE
T ss_pred eeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHH-HHHHHhhhhccCCceEEEEEE
Confidence 34678999999999999999999999999999999765 4556666554 44444432 25799999999
Q ss_pred cccCccccc----------------chhHhhhhHHHHHHHhcc-------CcEEEcCccccccceecCCCCChhhHHHHH
Q 010254 128 KLDLRDENQ----------------QVSLEQVMMPIMQQFREI-------ETCIECSALKQIQVKCFNSPLQPSEIVGVK 184 (514)
Q Consensus 128 K~Dl~~~~~----------------~~~~~~~~~~~~~~~~~~-------~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~ 184 (514)
|+|+... + ..+.++....+...|... ..++++||+++. +++.+.
T Consensus 243 K~DL~~~-ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~------------nV~~vF 309 (327)
T 3ohm_A 243 KKDLLEE-KIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTE------------NIRFVF 309 (327)
T ss_dssp CHHHHHH-HTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHH------------HHHHHH
T ss_pred Cchhhhh-hhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCH------------HHHHHH
Confidence 9998754 2 234444444444444321 147899999999 777776
Q ss_pred HHHHHHh
Q 010254 185 RVVQEKL 191 (514)
Q Consensus 185 ~~i~~~~ 191 (514)
+.+.+.+
T Consensus 310 ~~v~~~I 316 (327)
T 3ohm_A 310 AAVKDTI 316 (327)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666544
No 335
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.44 E-value=5.3e-13 Score=126.46 Aligned_cols=125 Identities=10% Similarity=0.038 Sum_probs=79.2
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhh-------hcCcc
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKL-------LSNKD 439 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~-------~~~~~ 439 (514)
...++|+++|.+|+|||||+|+|++..+........++... .......+...+.+|||+|.+.+... .....
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRP-VMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSC-EEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceee-EEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 34689999999999999999999998875444322222211 12222224567789999997543211 10011
Q ss_pred ccccCcEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 440 SLAACDIAVFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 440 ~~~~~d~vilv~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
..+.+|++++|+|++.. ++... ..|+..+....... ...|+++|+||+|+...
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~-~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKG-IWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECCSCCCG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcc-cccCEEEEEECcccCCc
Confidence 23579999999998653 34433 35666665432110 02699999999999653
No 336
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.44 E-value=2.5e-13 Score=147.73 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=84.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--------CC-----CCCCCcccc-----cce--------------eCC
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPAN--------VP-----PVLPPTRLP-----EDF--------------YPD 61 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~--------~~-----~~~~~tt~~-----~~~--------------~~~ 61 (514)
.+..+|+|+|++|||||||+|+|+...-... .. ....+.|+. ..+ ...
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 4567999999999999999999987421000 00 001122221 112 223
Q ss_pred eeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcc
Q 010254 62 RVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD 133 (514)
Q Consensus 62 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~ 133 (514)
++.+.||||||+.++......+++.+|++|+|+|++++.+++.... |.... .. ++|+++|+||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~~-~~--~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQAL-GE--RIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHH-HT--TCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHH-Hc--CCCeEEEEECCCcch
Confidence 7899999999999999999999999999999999999888877652 54433 33 799999999999874
No 337
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.43 E-value=8e-13 Score=124.56 Aligned_cols=122 Identities=14% Similarity=0.110 Sum_probs=75.0
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCC-CCCCCCC-CCccEEEEEEECCCCcEEEEEEecCChhHHHh--------hh-
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPF-SDNYTPT-TDERYAVNVVDQPGGTKKTVVLREIPEEAVAK--------LL- 435 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~--------~~- 435 (514)
...++|+++|.+|||||||+|+|++... ...+.++ .+.......+... ...+.+|||+|...+.. +.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 3458999999999999999999999884 3333333 3333343444443 35677899999643211 00
Q ss_pred cCccccccCcEEEEEEeCCChhhH-HHHHHHHHHHHhcCCCCCCCCcEEEEEe-CCCCccc
Q 010254 436 SNKDSLAACDIAVFVHDSSDESSW-KRATELLVEVASYGEDTGFEVPCLIVAA-KDDLDSF 494 (514)
Q Consensus 436 ~~~~~~~~~d~vilv~D~~~~~s~-~~~~~~~~~~~~~~~~~~~~~p~ilv~n-K~Dl~~~ 494 (514)
.....++.+|++|+|+|+++.... ..+..++..+.... .+.|.++|+| |+|+...
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~----~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED----AMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG----GGGGEEEEEECGGGGTTC
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch----hhccEEEEEEcccccCCc
Confidence 012367899999999999862221 22233444432211 0356666666 9999753
No 338
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.43 E-value=2.6e-13 Score=127.90 Aligned_cols=122 Identities=11% Similarity=0.084 Sum_probs=78.7
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCC-CCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhh-------cCcc
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-PTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLL-------SNKD 439 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~-------~~~~ 439 (514)
..++|+++|.+|+|||||+|+|++..+..... ++.+.......+... ...+.+|||+|.+.+.... ....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG--GFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEEC--CeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 46899999999999999999999988644433 233333333344443 4577799999975443211 0001
Q ss_pred ccccCcEEEEEEeCCChhhHHHH-HHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 440 SLAACDIAVFVHDSSDESSWKRA-TELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 440 ~~~~~d~vilv~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
...++|++++|+|++... +... ..|+..+....... ...|+++|+||+|+..
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~-~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKE-IWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGG-GGGGEEEEEECTTCCC
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchh-hhcCEEEEEeCcccCC
Confidence 113789999999987644 4333 35665555432110 1259999999999863
No 339
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.42 E-value=2.1e-13 Score=136.79 Aligned_cols=122 Identities=17% Similarity=0.142 Sum_probs=84.5
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCc-----------cEEEE----EEECC---CCcEEEEEEecCCh
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDE-----------RYAVN----VVDQP---GGTKKTVVLREIPE 428 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-----------~~~~~----~~~~~---~~~~~~~i~dt~g~ 428 (514)
...++|+++|.+|+|||||+++|++............+ .+... ..... .....+.+|||+|+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 45689999999999999999999986543211000000 00000 00000 01156779999999
Q ss_pred hHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 010254 429 EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 495 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 495 (514)
+.|...+ ...+..+|++++|+|+++..++.....|+..+.... ..|+++|+||+|+....
T Consensus 86 ~~~~~~~--~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~-----~~~iivviNK~Dl~~~~ 145 (403)
T 3sjy_A 86 EVLMATM--LSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG-----VKNLIIVQNKVDVVSKE 145 (403)
T ss_dssp GGGHHHH--HHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-----CCCEEEEEECGGGSCHH
T ss_pred HHHHHHH--HHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC-----CCCEEEEEECccccchH
Confidence 9887766 577889999999999999876777777776665543 36999999999998654
No 340
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.42 E-value=1.1e-13 Score=140.13 Aligned_cols=116 Identities=18% Similarity=0.193 Sum_probs=75.2
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCC-CCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhh------cCccc
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-PTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLL------SNKDS 440 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~------~~~~~ 440 (514)
..+||+++|++|||||||+|+|++.++..+.. ++++.+.....+.++ + ..+.+|||+|.+.+.... .....
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~-g-~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVG-G-IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEET-T-EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEEC-C-EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 45899999999999999999999987765544 333333333344444 3 456789999975543322 23457
Q ss_pred cccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 441 LAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 441 ~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
++.+|++++|+|++++.+... ..|+..+. +.|+++|+||+|+...
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~--------~~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK--------HRPLILVMNKIDLVEK 345 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT--------TSCEEEEEECTTSSCG
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc--------CCcEEEEEECCCCCcc
Confidence 889999999999998765544 34444442 4799999999999764
No 341
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.40 E-value=2.1e-12 Score=122.58 Aligned_cols=138 Identities=14% Similarity=0.118 Sum_probs=80.5
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCC--------CCCCCccEEEEEEECCCCcEEEEEEecCChh-------HHH
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY--------TPTTDERYAVNVVDQPGGTKKTVVLREIPEE-------AVA 432 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~-------~~~ 432 (514)
..++|+++|.+|+|||||+|+|++....... .++.+.+.....+...+....+.+|||+|.. .+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 4589999999999999999998877754433 2344444444444444333467799999951 111
Q ss_pred hh-----------h-------cCccccccCcEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 433 KL-----------L-------SNKDSLAACDIAVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 433 ~~-----------~-------~~~~~~~~~d~vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
.+ . +....-.++|+++++++.+... +...+ .++..+.. ++|+++|+||+|+..
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~-------~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE-------KVNIIPLIAKADTLT 158 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT-------TSCEEEEESSGGGSC
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc-------cCCEEEEEeccCCCC
Confidence 11 1 1111123478999999776521 22232 33444432 489999999999875
Q ss_pred cccc---hhhHHHHHHHcCCccc
Q 010254 494 FAMA---IQDSTRVFTFLVMVLY 513 (514)
Q Consensus 494 ~~~~---~~~~~~~~~~~~~~~~ 513 (514)
.... .....+.....++++|
T Consensus 159 ~~e~~~~~~~i~~~l~~~~i~v~ 181 (274)
T 3t5d_A 159 PEECQQFKKQIMKEIQEHKIKIY 181 (274)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEE
Confidence 4321 2344555556676655
No 342
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.40 E-value=1.5e-12 Score=131.60 Aligned_cols=134 Identities=11% Similarity=0.084 Sum_probs=86.7
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCC-------------------------------CCCCCccEEEEEEECCC
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-------------------------------TPTTDERYAVNVVDQPG 415 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 415 (514)
+..++|+++|.+|+|||||+++|++....... .+..|.+.....+..
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-- 92 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-- 92 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec--
Confidence 45689999999999999999999654321111 012233333333433
Q ss_pred CcEEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCCChhh---HH---HHHHHHHHHHhcCCCCCCCCc-EEEEEeC
Q 010254 416 GTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESS---WK---RATELLVEVASYGEDTGFEVP-CLIVAAK 488 (514)
Q Consensus 416 ~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~p-~ilv~nK 488 (514)
....+.+|||+|++.|...+ ...+..+|++|+|+|+++... |+ ...+.+..+... ++| +++|+||
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~--~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~------~v~~iIvviNK 164 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNM--IGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA------GVKHLIVLINK 164 (439)
T ss_pred CCeEEEEEECCChHHHHHHH--HhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc------CCCeEEEEeec
Confidence 34577899999999997766 567889999999999998632 21 122222222222 577 9999999
Q ss_pred CCCcccc-------cchhhHHHHHHHcCC
Q 010254 489 DDLDSFA-------MAIQDSTRVFTFLVM 510 (514)
Q Consensus 489 ~Dl~~~~-------~~~~~~~~~~~~~~~ 510 (514)
+|+.... ....+..++++++++
T Consensus 165 ~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~ 193 (439)
T 3j2k_7 165 MDDPTVNWSNERYEECKEKLVPFLKKVGF 193 (439)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHhcc
Confidence 9995311 223445566666654
No 343
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.39 E-value=5.4e-13 Score=125.87 Aligned_cols=165 Identities=18% Similarity=0.074 Sum_probs=97.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHh-----cCCCCCCCCCCCCC---------------ccccc---c-------------
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAA-----ADTFPANVPPVLPP---------------TRLPE---D------------- 57 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~-----~~~~~~~~~~~~~~---------------tt~~~---~------------- 57 (514)
+....+++.|.+|||||||++.|. +.+... +...... +.... .
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~v-vd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAY-VNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDR 90 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEE-EECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEE-EeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHH
Confidence 556889999999999999999998 544210 1000000 00000 0
Q ss_pred -------------eeCCeeEEEEEeCCCCccchhh------HHHhhhccCEEEEEEeCCCcccHHHHHHHHH---HHHHh
Q 010254 58 -------------FYPDRVPITIIDTPSSVEDRGK------LGEELRRADAVVLTYACDRPETLDELSTFWL---PELRR 115 (514)
Q Consensus 58 -------------~~~~~~~~~l~Dt~G~~~~~~~------~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~---~~l~~ 115 (514)
.....+.+.||||||..+.... ...++.. +++++|+|+.......+....+. .....
T Consensus 91 ~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 169 (262)
T 1yrb_A 91 LMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR 169 (262)
T ss_dssp HHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc
Confidence 0012358999999998754322 1234566 89999999765444433322111 11222
Q ss_pred cCCCCcEEEEEecccCcccccchhHhh---hhHHH---------------------HHHHhccCcEEEcCccccccceec
Q 010254 116 LEVKVPVIVVGCKLDLRDENQQVSLEQ---VMMPI---------------------MQQFREIETCIECSALKQIQVKCF 171 (514)
Q Consensus 116 ~~~~~pvilv~NK~Dl~~~~~~~~~~~---~~~~~---------------------~~~~~~~~~~i~~Sa~~~~~~~~f 171 (514)
. ++|+++|+||+|+..........+ ....+ .+.++...+++++||+++.
T Consensus 170 ~--~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~----- 242 (262)
T 1yrb_A 170 L--GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTRE----- 242 (262)
T ss_dssp H--TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCT-----
T ss_pred c--CCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcc-----
Confidence 2 689999999999876411101111 11111 1233322278999999999
Q ss_pred CCCCChhhHHHHHHHHHHHhcCc
Q 010254 172 NSPLQPSEIVGVKRVVQEKLREG 194 (514)
Q Consensus 172 ~~~l~~~~i~~L~~~i~~~~~~~ 194 (514)
|+++|++.|.+.++.+
T Consensus 243 -------gi~~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 243 -------GFEDLETLAYEHYCTC 258 (262)
T ss_dssp -------THHHHHHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHhccc
Confidence 9999999998877643
No 344
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.39 E-value=3.1e-13 Score=132.19 Aligned_cols=111 Identities=16% Similarity=0.186 Sum_probs=79.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCccc---ccceeCCeeEEEEEeCCCCccchh-------hHHHhhhc
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRL---PEDFYPDRVPITIIDTPSSVEDRG-------KLGEELRR 86 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~---~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~ 86 (514)
.+|+|||.||||||||||+|++.+ . .+...+.||+ ...+...+.++.++||||+..... .....+++
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~--~-~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTE--S-EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBC--C-CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC--C-cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 699999999999999999999976 2 2344566663 334556788999999999864321 23356889
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHHhcC---CCCcEEEEEecccCcc
Q 010254 87 ADAVVLTYACDRPETLDELSTFWLPELRRLE---VKVPVIVVGCKLDLRD 133 (514)
Q Consensus 87 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~ 133 (514)
||++++|+|++++. .+.+. +...+.... .++|.+++.||+|...
T Consensus 150 ad~il~vvD~~~p~--~~~~~-i~~EL~~~~~~l~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 150 CNLLFIILDVNKPL--HHKQI-IEKELEGVGIRLNKTPPDILIKKKEKGG 196 (376)
T ss_dssp CSEEEEEEETTSHH--HHHHH-HHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred cCccccccccCccH--HHHHH-HHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence 99999999998763 33332 344444432 3678899999999643
No 345
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.39 E-value=5.2e-13 Score=137.00 Aligned_cols=119 Identities=16% Similarity=0.051 Sum_probs=76.5
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCC-------------------------------CCCCCCccEEEEEEECCC
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDN-------------------------------YTPTTDERYAVNVVDQPG 415 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 415 (514)
...+||+++|.+|+|||||+++|++...... ..+..+.+.....+..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-- 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-- 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec--
Confidence 4568999999999999999999976521100 0011222222222333
Q ss_pred CcEEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCCChhhHHH-----HHHHHHHHHhcCCCCCCCCcEEEEEeCCC
Q 010254 416 GTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKR-----ATELLVEVASYGEDTGFEVPCLIVAAKDD 490 (514)
Q Consensus 416 ~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~-----~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 490 (514)
....+.+|||+|++.|...+ ...+..+|++|+|+|+++..++.. ...+...+..... ..|+|+|+||+|
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~--~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~----~~~iIvviNK~D 182 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNA--IMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG----IHNLIIAMNKMD 182 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHH--HHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT----CCCEEEEEECGG
T ss_pred CCceEEEEECCCcHHHHHHH--HHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC----CCcEEEEEECcC
Confidence 44677899999999987766 578899999999999998754322 2223323332220 356999999999
Q ss_pred Ccc
Q 010254 491 LDS 493 (514)
Q Consensus 491 l~~ 493 (514)
+..
T Consensus 183 l~~ 185 (483)
T 3p26_A 183 NVD 185 (483)
T ss_dssp GGT
T ss_pred ccc
Confidence 976
No 346
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.37 E-value=3e-13 Score=126.79 Aligned_cols=89 Identities=16% Similarity=0.176 Sum_probs=56.3
Q ss_pred CCCcc-chhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHH
Q 010254 71 PSSVE-DRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQ 149 (514)
Q Consensus 71 ~G~~~-~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~ 149 (514)
||+.. ........++++|+|+.|+|+.++.+..... +. . . ++|.++|+||+|+.+. ...+.. ..+.+
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l----l-~k~~iivlNK~DL~~~---~~~~~~-~~~~~ 72 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F----S-RKETIILLNKVDIADE---KTTKKW-VEFFK 72 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C----T-TSEEEEEEECGGGSCH---HHHHHH-HHHHH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h----c-CCCcEEEEECccCCCH---HHHHHH-HHHHH
Confidence 56543 3345678899999999999999887654321 11 1 1 7899999999999865 111111 11222
Q ss_pred HHhccCcEEEcCccccccceecCCCCChhhHHHHHHH
Q 010254 150 QFREIETCIECSALKQIQVKCFNSPLQPSEIVGVKRV 186 (514)
Q Consensus 150 ~~~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~ 186 (514)
..+ . ++ .+||+++. |+++|++.
T Consensus 73 ~~g-~-~v-~iSa~~~~------------gi~~L~~~ 94 (262)
T 3cnl_A 73 KQG-K-RV-ITTHKGEP------------RKVLLKKL 94 (262)
T ss_dssp HTT-C-CE-EECCTTSC------------HHHHHHHH
T ss_pred HcC-C-eE-EEECCCCc------------CHHHHHHH
Confidence 222 2 67 99999998 88776543
No 347
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.37 E-value=1.8e-13 Score=134.66 Aligned_cols=140 Identities=16% Similarity=0.155 Sum_probs=73.8
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCC-CCCC------CCCccEEEEEE--ECCCCcEEEEEEecCCh-------hH
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSD-NYTP------TTDERYAVNVV--DQPGGTKKTVVLREIPE-------EA 430 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~-~~~~------~~~~~~~~~~~--~~~~~~~~~~i~dt~g~-------~~ 430 (514)
...++|+|+|++|+|||||+|+|++..... .+.+ ..+........ ...+......+|||+|. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 456899999999999999999987654332 2211 11222222222 22211235669999997 44
Q ss_pred HHhhhc----------------CccccccCcEEEEEEeCCC-hhhHHHHHH-HHHHHHhcCCCCCCCCcEEEEEeCCCCc
Q 010254 431 VAKLLS----------------NKDSLAACDIAVFVHDSSD-ESSWKRATE-LLVEVASYGEDTGFEVPCLIVAAKDDLD 492 (514)
Q Consensus 431 ~~~~~~----------------~~~~~~~~d~vilv~D~~~-~~s~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 492 (514)
+..+.. .+..+..+++.++||++++ ..++..++. |+..+. .++|+|+|+||+|+.
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-------~~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-------NKVNIVPVIAKADTL 187 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-------S-SCEEEEEECCSSS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-------cCCCEEEEEECCCCC
Confidence 433321 0112233333346666654 455666653 444331 269999999999998
Q ss_pred ccc-cch--hhHHHHHHHcCCccc
Q 010254 493 SFA-MAI--QDSTRVFTFLVMVLY 513 (514)
Q Consensus 493 ~~~-~~~--~~~~~~~~~~~~~~~ 513 (514)
..+ +.. .++.++++.+++++|
T Consensus 188 ~~~ev~~~k~~i~~~~~~~~i~~~ 211 (361)
T 2qag_A 188 TLKERERLKKRILDEIEEHNIKIY 211 (361)
T ss_dssp CHHHHHHHHHHHHHHTTCC-CCSC
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEE
Confidence 754 222 567778888888776
No 348
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.35 E-value=2.1e-12 Score=125.73 Aligned_cols=152 Identities=12% Similarity=0.109 Sum_probs=91.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhc------CCCCCCCCCCCC-------------------------------------
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAA------DTFPANVPPVLP------------------------------------- 50 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~------~~~~~~~~~~~~------------------------------------- 50 (514)
..+..|+|+|+||||||||+|.|.+ ++. .+....+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v--~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~ 130 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV--AVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLG 130 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE--EEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEE--EEEEEcCcccccccchHHHhhhheeeccCcccccccCccccccc
Confidence 4578899999999999999999984 221 1000000
Q ss_pred Ccc---ccc--ceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEE
Q 010254 51 PTR---LPE--DFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVV 125 (514)
Q Consensus 51 ~tt---~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv 125 (514)
+++ .+. .+...+..+.|+||||+..... .....+|++++|+|...+...+.+. ..+. +.+.++|
T Consensus 131 G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~----~~i~----~~~~ivv 199 (337)
T 2qm8_A 131 GVAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIK----KGIF----ELADMIA 199 (337)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CC----TTHH----HHCSEEE
T ss_pred chHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHH----HHHh----ccccEEE
Confidence 000 000 0222577899999999875433 2357899999999976443221111 1111 2456788
Q ss_pred EecccCcccccchhHhhhhHHHHHHHh--c------cCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 126 GCKLDLRDENQQVSLEQVMMPIMQQFR--E------IETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 126 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~------~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
+||+|+..... . .......+...+. . ..+++.+||+++. |+++|++.|.+..+
T Consensus 200 lNK~Dl~~~~~-~-s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~------------gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 VNKADDGDGER-R-ASAAASEYRAALHILTPPSATWTPPVVTISGLHGK------------GLDSLWSRIEDHRS 260 (337)
T ss_dssp EECCSTTCCHH-H-HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTB------------SHHHHHHHHHHHHH
T ss_pred EEchhccCchh-H-HHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCC------------CHHHHHHHHHHHHH
Confidence 89999754311 1 1111222322221 0 2378999999999 99999999988765
No 349
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.35 E-value=9.2e-13 Score=139.17 Aligned_cols=113 Identities=18% Similarity=0.173 Sum_probs=83.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--CCCC-CCCCCC------------Ccc---cccceeCCeeEEEEEeCCCCccchhh
Q 010254 18 RIVVCGEKGTGKSSLIVTAAADT--FPAN-VPPVLP------------PTR---LPEDFYPDRVPITIIDTPSSVEDRGK 79 (514)
Q Consensus 18 ~I~ivG~~nvGKSsLin~l~~~~--~~~~-~~~~~~------------~tt---~~~~~~~~~~~~~l~Dt~G~~~~~~~ 79 (514)
+|+|+|+.++|||||..+|+... .... .+.... +.| ....+.++++.++|+||||+.+|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 68999999999999999997321 1010 000000 122 12345577899999999999999999
Q ss_pred HHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc
Q 010254 80 LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 80 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 134 (514)
....++-+|++|+|+|+..+...+... ....+.+. ++|.|+++||+|....
T Consensus 84 v~raL~~~DgavlVVDa~~GV~~qT~~--v~~~a~~~--~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKDGVQAQTRI--LFHALRKM--GIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHTTCSEEECCEESSCTTCSHHHH--HHHHHHHH--TCSCEECCEECCSSSC
T ss_pred HHHHHHHhCEEEEEEeCCCCCcHHHHH--HHHHHHHc--CCCeEEEEeccccccC
Confidence 999999999999999999876655543 44555555 8999999999997654
No 350
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.34 E-value=4.5e-14 Score=144.58 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=87.7
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
..+|+++|.+|+|||||+++|.+..+...+.++.|.++....+..+ +...+.+|||+|++.|...+ ...++.+|+++
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~--~~~~~~aD~vI 80 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMR--ARGTQVTDIVI 80 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSB--BSSSBSBSSCE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHH--HHHHccCCEEE
Confidence 3679999999999999999999888766665666655554555554 33456789999999988766 57889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
+|+|+++..+.+....| ..+... ++|+++|+||+|+...
T Consensus 81 LVVDa~dg~~~qt~e~l-~~~~~~------~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 81 LVVAADDGVMKQTVESI-QHAKDA------HVPIVLAINKCDKAEA 119 (537)
T ss_dssp EECBSSSCCCHHHHHHH-HHHHTT------TCCEEECCBSGGGTTT
T ss_pred EEEECCCCccHHHHHHH-HHHHHc------CCcEEEEEeccccccc
Confidence 99999987555444433 222222 6899999999998753
No 351
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.34 E-value=1.4e-12 Score=132.03 Aligned_cols=133 Identities=11% Similarity=0.143 Sum_probs=86.5
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCC--CCCCCC-----------------------------CCCCCccEEEEEEECCC
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGR--PFSDNY-----------------------------TPTTDERYAVNVVDQPG 415 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 415 (514)
+..++|+++|.+++|||||+++|++. .+.... ....+.......+..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-- 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-- 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC--
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec--
Confidence 34689999999999999999999864 221100 112222222223333
Q ss_pred CcEEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHH-------HHHHHhcCCCCCCCCcEEEEEeC
Q 010254 416 GTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATEL-------LVEVASYGEDTGFEVPCLIVAAK 488 (514)
Q Consensus 416 ~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~-------~~~~~~~~~~~~~~~p~ilv~nK 488 (514)
....+.+|||+|++.|...+ ...+..+|++|+|+|+++ .+|+....| +..+.... -.|+++|+||
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~--~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~-----~~~iivviNK 153 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNM--ITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMG-----LDQLIVAVNK 153 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHH--HHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTT-----CTTCEEEEEC
T ss_pred CCeEEEEEECCCcHHHHHHH--HhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcC-----CCeEEEEEEc
Confidence 34567899999999998766 568899999999999998 677754432 22222221 2469999999
Q ss_pred CCCccc-------ccchhhHHHHHHHcC
Q 010254 489 DDLDSF-------AMAIQDSTRVFTFLV 509 (514)
Q Consensus 489 ~Dl~~~-------~~~~~~~~~~~~~~~ 509 (514)
+|+... ....++.+++++.++
T Consensus 154 ~Dl~~~~~~~~~~~~~~~~i~~~~~~~~ 181 (435)
T 1jny_A 154 MDLTEPPYDEKRYKEIVDQVSKFMRSYG 181 (435)
T ss_dssp GGGSSSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 999762 122456777777766
No 352
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.33 E-value=3.3e-12 Score=127.69 Aligned_cols=133 Identities=12% Similarity=0.047 Sum_probs=87.3
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCC-------CCCC--CC-----CCCCccEEEEEEECCCCcEEEEEEecCChhHHHhh
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRP-------FSDN--YT-----PTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKL 434 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~-------~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~ 434 (514)
.+||+++|.+++|||||+++|++.. +... .+ ...+.+.....+.+..+...+.+|||+|++.|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 4899999999999999999998741 1100 00 01122222222333324467779999999998765
Q ss_pred hcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCc-EEEEEeCCCCcccc----cchhhHHHHHHHcC
Q 010254 435 LSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVP-CLIVAAKDDLDSFA----MAIQDSTRVFTFLV 509 (514)
Q Consensus 435 ~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~----~~~~~~~~~~~~~~ 509 (514)
+ ...+..+|++|+|+|+++....+....| ..+... ++| +++|+||+|+...+ ....+.++++++++
T Consensus 83 ~--~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~------~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 153 (397)
T 1d2e_A 83 M--ITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI------GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFG 153 (397)
T ss_dssp H--HHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT------TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred H--HhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc------CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcC
Confidence 5 5678899999999999986443333333 333332 588 78999999997422 12346677777776
Q ss_pred C
Q 010254 510 M 510 (514)
Q Consensus 510 ~ 510 (514)
+
T Consensus 154 ~ 154 (397)
T 1d2e_A 154 Y 154 (397)
T ss_dssp S
T ss_pred C
Confidence 4
No 353
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.33 E-value=1.4e-12 Score=130.99 Aligned_cols=134 Identities=13% Similarity=0.063 Sum_probs=88.8
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCC--------CCCCC--CC-----CCCCccEEEEEEECCCCcEEEEEEecCChhHH
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGR--------PFSDN--YT-----PTTDERYAVNVVDQPGGTKKTVVLREIPEEAV 431 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~--------~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~ 431 (514)
+..++|+++|.+|+|||||+++|++. .+... .+ ...+.+.....+.+..+...+.+|||+|++.|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 35689999999999999999999873 22110 00 01122122223333324466779999999988
Q ss_pred HhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCc-EEEEEeCCCCccccc----chhhHHHHHH
Q 010254 432 AKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVP-CLIVAAKDDLDSFAM----AIQDSTRVFT 506 (514)
Q Consensus 432 ~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~----~~~~~~~~~~ 506 (514)
...+ ...+..+|++|+|+|+++.... ....++..+... ++| +++|+||+|+...+. ...+..++++
T Consensus 89 ~~~~--~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~------~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~ 159 (405)
T 2c78_A 89 IKNM--ITGAAQMDGAILVVSAADGPMP-QTREHILLARQV------GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLN 159 (405)
T ss_dssp HHHH--HHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT------TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc------CCCEEEEEEECccccCcHHHHHHHHHHHHHHHH
Confidence 7655 5678899999999999987543 334555544443 588 899999999974221 2345667777
Q ss_pred HcC
Q 010254 507 FLV 509 (514)
Q Consensus 507 ~~~ 509 (514)
+++
T Consensus 160 ~~~ 162 (405)
T 2c78_A 160 QYE 162 (405)
T ss_dssp HTT
T ss_pred Hhc
Confidence 766
No 354
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.33 E-value=3.8e-12 Score=128.80 Aligned_cols=133 Identities=15% Similarity=0.172 Sum_probs=85.9
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCC------------CCC---------------------CCccEEEEEEEC
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY------------TPT---------------------TDERYAVNVVDQ 413 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~------------~~~---------------------~~~~~~~~~~~~ 413 (514)
+..++|+++|.+++|||||+++|++....... ..+ .+.+.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 34589999999999999999999865421100 011 111112222222
Q ss_pred CCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 414 PGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 414 ~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
....+.+|||+|++.|...+ ...+..+|++|+|+|+++....+ ...++..+.... -.|+++|+||+|+..
T Consensus 102 --~~~~~~iiDtpGh~~f~~~~--~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~~-----~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 102 --AKRKFIIADTPGHEQYTRNM--ATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLLG-----IKHIVVAINKMDLNG 171 (434)
T ss_dssp --SSEEEEEEECCCSGGGHHHH--HHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHTT-----CCEEEEEEECTTTTT
T ss_pred --CCceEEEEECCChHHHHHHH--HHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHcC-----CCeEEEEEEcCcCCc
Confidence 34567799999999887665 46789999999999999864322 333443333321 236999999999975
Q ss_pred cc-----cchhhHHHHHHHcC
Q 010254 494 FA-----MAIQDSTRVFTFLV 509 (514)
Q Consensus 494 ~~-----~~~~~~~~~~~~~~ 509 (514)
.. ....+..+++++++
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~g 192 (434)
T 1zun_B 172 FDERVFESIKADYLKFAEGIA 192 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHTTT
T ss_pred ccHHHHHHHHHHHHHHHHHhC
Confidence 21 12455667777776
No 355
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.33 E-value=1.3e-11 Score=124.00 Aligned_cols=129 Identities=15% Similarity=0.115 Sum_probs=82.6
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCC---CCCCCC--CCCccEEEEEEEC-------------C--CC----cEEEEEE
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPF---SDNYTP--TTDERYAVNVVDQ-------------P--GG----TKKTVVL 423 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~~----~~~~~i~ 423 (514)
..++|+++|..++|||||+++|++... .....+ |....+....+.. + +. ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 458999999999999999999996532 222223 2222333322211 1 11 1567799
Q ss_pred ecCChhHHHhhhcCccccccCcEEEEEEeCCCh----hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc---
Q 010254 424 REIPEEAVAKLLSNKDSLAACDIAVFVHDSSDE----SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM--- 496 (514)
Q Consensus 424 dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~----~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--- 496 (514)
||+|++.|...+ ...+..+|++|+|+|+++. .+++.+.. +.... ..|+++|+||+|+.....
T Consensus 87 DtPGh~~f~~~~--~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l~-----~~~iivv~NK~Dl~~~~~~~~ 155 (408)
T 1s0u_A 87 DSPGHETLMATM--LSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEILG-----IDKIIIVQNKIDLVDEKQAEE 155 (408)
T ss_dssp ECSSHHHHHHHH--HTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHTT-----CCCEEEEEECTTSSCTTTTTT
T ss_pred ECCCHHHHHHHH--HHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHcC-----CCeEEEEEEccCCCCHHHHHH
Confidence 999999987655 4567789999999999954 44443332 22222 358999999999976432
Q ss_pred chhhHHHHHHH
Q 010254 497 AIQDSTRVFTF 507 (514)
Q Consensus 497 ~~~~~~~~~~~ 507 (514)
..++..+++++
T Consensus 156 ~~~~i~~~l~~ 166 (408)
T 1s0u_A 156 NYEQIKEFVKG 166 (408)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 34455666554
No 356
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.32 E-value=7.9e-12 Score=125.62 Aligned_cols=130 Identities=15% Similarity=0.160 Sum_probs=83.3
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCC---CCCCCC--CCCccEEEEEEEC-------------C--CC----cEEEEE
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPF---SDNYTP--TTDERYAVNVVDQ-------------P--GG----TKKTVV 422 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~~----~~~~~i 422 (514)
...++|+++|.+++|||||+++|++... .....+ |....+....+.. + +. ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 4568999999999999999999996532 222223 2222233222211 1 11 156779
Q ss_pred EecCChhHHHhhhcCccccccCcEEEEEEeCCCh----hhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc--
Q 010254 423 LREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDE----SSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM-- 496 (514)
Q Consensus 423 ~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~----~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-- 496 (514)
|||+|++.|...+ ...+..+|++|+|+|+++. .+++.+.. +.... ..|+++|+||+|+.....
T Consensus 88 iDtPGh~~f~~~~--~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~~-----~~~iivviNK~Dl~~~~~~~ 156 (410)
T 1kk1_A 88 IDAPGHEALMTTM--LAGASLMDGAILVIAANEPCPRPQTREHLMA----LQIIG-----QKNIIIAQNKIELVDKEKAL 156 (410)
T ss_dssp EECSSHHHHHHHH--HHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHHT-----CCCEEEEEECGGGSCHHHHH
T ss_pred EECCChHHHHHHH--HhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcC-----CCcEEEEEECccCCCHHHHH
Confidence 9999999987655 4667789999999999964 34443332 22222 358999999999976432
Q ss_pred -chhhHHHHHHH
Q 010254 497 -AIQDSTRVFTF 507 (514)
Q Consensus 497 -~~~~~~~~~~~ 507 (514)
..++..++.+.
T Consensus 157 ~~~~~i~~~l~~ 168 (410)
T 1kk1_A 157 ENYRQIKEFIEG 168 (410)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 23445555543
No 357
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.31 E-value=4.3e-12 Score=122.14 Aligned_cols=119 Identities=19% Similarity=0.147 Sum_probs=75.5
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCC-----CCCC----------------------CccE--------------
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-----TPTT----------------------DERY-------------- 406 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~-----~~~~----------------------~~~~-------------- 406 (514)
..++|+++|++|||||||+|+|++..+.... ..++ ++..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999999875222 1111 0000
Q ss_pred ----------EEEEEECCCCcEEEEEEecCChh-------------HHHhhhcCccccccCcEEE-EEEeCCChhhHHHH
Q 010254 407 ----------AVNVVDQPGGTKKTVVLREIPEE-------------AVAKLLSNKDSLAACDIAV-FVHDSSDESSWKRA 462 (514)
Q Consensus 407 ----------~~~~~~~~~~~~~~~i~dt~g~~-------------~~~~~~~~~~~~~~~d~vi-lv~D~~~~~s~~~~ 462 (514)
....+..+ ....+.+|||+|.. .+..+. ..+++.++.++ +|+|+++..+....
T Consensus 105 g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDML--MQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp SSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHH--HHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred ccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHH--HHHHcCCCeEEEEEecCCcchhhhHH
Confidence 00000111 12456789999952 344443 46777888666 79999876444433
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 010254 463 TELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 495 (514)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 495 (514)
..++..+... +.|+++|+||+|+....
T Consensus 182 ~~~~~~~~~~------~~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 182 LKIAKEVDPQ------GQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHHHHCTT------CSSEEEEEECGGGSCTT
T ss_pred HHHHHHhCCC------CCeEEEEEEccccCCCC
Confidence 3444444321 68999999999997643
No 358
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.31 E-value=2.9e-12 Score=117.54 Aligned_cols=153 Identities=12% Similarity=0.042 Sum_probs=91.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCCCCCcc---------------ccc----ce----------eCCee
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPA---NVPPVLPPTR---------------LPE----DF----------YPDRV 63 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~---~~~~~~~~tt---------------~~~----~~----------~~~~~ 63 (514)
..+|+|+|.+|||||||+|+|++..... +.....++++ +.. .. ...+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 4689999999999999999998752111 1111111111 000 00 12356
Q ss_pred EEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhh
Q 010254 64 PITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQV 143 (514)
Q Consensus 64 ~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~ 143 (514)
.+.+|||+|.-.... .+...++.+++|+|++.... .. |. ..... +.|+++|+||+|+.+. +....++
T Consensus 110 d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~---~~-~~~~~--~~~~iiv~NK~Dl~~~-~~~~~~~- 176 (221)
T 2wsm_A 110 DLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VV---EK-HPEIF--RVADLIVINKVALAEA-VGADVEK- 176 (221)
T ss_dssp SEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HH---HH-CHHHH--HTCSEEEEECGGGHHH-HTCCHHH-
T ss_pred CEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hh---hh-hhhhh--hcCCEEEEecccCCcc-hhhHHHH-
Confidence 789999999411111 11135789999999876532 11 11 11122 5789999999998653 1112222
Q ss_pred hHHHHHHHhccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 144 MMPIMQQFREIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 144 ~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
.......+....+++++||++|. |+++|++.|.+.+..
T Consensus 177 ~~~~~~~~~~~~~i~~~Sa~~g~------------gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 177 MKADAKLINPRAKIIEMDLKTGK------------GFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHCTTSEEEECBTTTTB------------THHHHHHHHHHHHC-
T ss_pred HHHHHHHhCCCCeEEEeecCCCC------------CHHHHHHHHHHHHHH
Confidence 22233333322379999999999 999999999887643
No 359
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.31 E-value=6.4e-12 Score=131.70 Aligned_cols=135 Identities=14% Similarity=0.072 Sum_probs=86.0
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCC-------------------------------CCCCccEEEEEEECCC
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-------------------------------PTTDERYAVNVVDQPG 415 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 415 (514)
...+||+++|.+|+|||||+++|++........ +..+.+.....+..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-- 242 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-- 242 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC--
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec--
Confidence 456899999999999999999999775432210 11222222223333
Q ss_pred CcEEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCCChh---hH--HHHHHHHHHHHhcCCCCCCC-CcEEEEEeCC
Q 010254 416 GTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDES---SW--KRATELLVEVASYGEDTGFE-VPCLIVAAKD 489 (514)
Q Consensus 416 ~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~---s~--~~~~~~~~~~~~~~~~~~~~-~p~ilv~nK~ 489 (514)
+...+.+|||+|++.|...+ ...++.+|++|+|+|+++.. +| .........+.... + .|+|+|+||+
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~--~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l-----gi~~iIVVvNKi 315 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNA--IMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-----GIHNLIIAMNKM 315 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHH--TTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT-----TCCEEEEEEECT
T ss_pred CCceEEEEECCCCcccHHHH--HHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc-----CCCeEEEEEecc
Confidence 34567799999999988766 57889999999999998752 11 11222222222222 3 4599999999
Q ss_pred CCcccc-c----chhhHHHHHHHcCC
Q 010254 490 DLDSFA-M----AIQDSTRVFTFLVM 510 (514)
Q Consensus 490 Dl~~~~-~----~~~~~~~~~~~~~~ 510 (514)
|+.... . ...+...+..++++
T Consensus 316 Dl~~~~~~~~~ei~~~l~~~l~~~g~ 341 (611)
T 3izq_1 316 DNVDWSQQRFEEIKSKLLPYLVDIGF 341 (611)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cccchhHHHHHHHHHHHHHHHHhhcc
Confidence 997622 1 13444555555543
No 360
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.31 E-value=4.2e-12 Score=129.69 Aligned_cols=127 Identities=10% Similarity=0.144 Sum_probs=82.6
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCC-------CCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccc
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRP-------FSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDS 440 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~ 440 (514)
..++|+++|.+++|||||+++|++.. ......+..|.+.....+.++ ...+.+|||+|++.|...+ ...
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~~--~~~ 93 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAV--VSA 93 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHHH--HHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHHH--HHH
Confidence 45899999999999999999999876 111222222322222233333 3567789999999887665 567
Q ss_pred cccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc---cchhhHHHHHHHc
Q 010254 441 LAACDIAVFVHDSSD---ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA---MAIQDSTRVFTFL 508 (514)
Q Consensus 441 ~~~~d~vilv~D~~~---~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~ 508 (514)
+..+|++++|+|+++ +.+++.+. .+... ++|+++|+||+|+..+. ...++..++++..
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~~------~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~ 157 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGEHML----ILDHF------NIPIIVVITKSDNAGTEEIKRTEMIMKSILQST 157 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHHHHH----HHHHT------TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHS
T ss_pred HhhCCEEEEEEecCCCccHHHHHHHH----HHHHc------CCCEEEEEECCCcccchhHHHHHHHHHHHHhhh
Confidence 889999999999998 34433332 22222 68999999999997642 1234455565554
No 361
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.30 E-value=1.1e-12 Score=135.06 Aligned_cols=130 Identities=15% Similarity=0.049 Sum_probs=87.3
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCC---------------CC-------CCCCCccEEEEEEECCCCcEEEEEEecC
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSD---------------NY-------TPTTDERYAVNVVDQPGGTKKTVVLREI 426 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~---------------~~-------~~~~~~~~~~~~~~~~~~~~~~~i~dt~ 426 (514)
..+|+|+|.+|+|||||+++|+...... .. ....+.......+.. +...+.+|||+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~i~liDTP 90 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY--KDYLINLLDTP 90 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE--TTEEEEEECCC
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe--CCEEEEEEECC
Confidence 4689999999999999999997211100 00 011121222222332 34677799999
Q ss_pred ChhHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHH
Q 010254 427 PEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFT 506 (514)
Q Consensus 427 g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 506 (514)
|++.|.... ...++.+|++|+|+|+++..+.+....|.. +... ++|+++|+||+|+.... ......++.+
T Consensus 91 G~~df~~~~--~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~~~------~iPiivviNK~Dl~~~~-~~~~l~ei~~ 160 (528)
T 3tr5_A 91 GHADFTEDT--YRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CRLR------HTPIMTFINKMDRDTRP-SIELLDEIES 160 (528)
T ss_dssp CSTTCCHHH--HHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HHTT------TCCEEEEEECTTSCCSC-HHHHHHHHHH
T ss_pred CchhHHHHH--HHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHHc------CCCEEEEEeCCCCcccc-HHHHHHHHHH
Confidence 998877655 578899999999999998766666655532 3322 69999999999996532 3334556666
Q ss_pred HcCC
Q 010254 507 FLVM 510 (514)
Q Consensus 507 ~~~~ 510 (514)
.++.
T Consensus 161 ~l~~ 164 (528)
T 3tr5_A 161 ILRI 164 (528)
T ss_dssp HHCC
T ss_pred hhCC
Confidence 6665
No 362
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.30 E-value=4.7e-12 Score=131.68 Aligned_cols=133 Identities=15% Similarity=0.117 Sum_probs=85.5
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCC-----------CCC--CCCCccEEEE--EEEC---CCCcEEEEEEecCChh
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSD-----------NYT--PTTDERYAVN--VVDQ---PGGTKKTVVLREIPEE 429 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~-----------~~~--~~~~~~~~~~--~~~~---~~~~~~~~i~dt~g~~ 429 (514)
...+|+|+|.+++|||||+++|+...-.. ... ...+.+.... .+.+ ++....+.+|||+|++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 35789999999999999999998632110 000 0112222111 1211 3233566799999998
Q ss_pred HHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcC
Q 010254 430 AVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV 509 (514)
Q Consensus 430 ~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 509 (514)
.|.... ...++.+|++|+|+|+++..+++....|...... ++|+++|+||+|+...+ ......++++.++
T Consensus 83 dF~~ev--~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~-------~ipiIvViNKiDl~~a~-~~~v~~ei~~~lg 152 (599)
T 3cb4_D 83 DFSYEV--SRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM-------DLEVVPVLNKIDLPAAD-PERVAEEIEDIVG 152 (599)
T ss_dssp GGHHHH--HHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT-------TCEEEEEEECTTSTTCC-HHHHHHHHHHHTC
T ss_pred HHHHHH--HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-------CCCEEEeeeccCccccc-HHHHHHHHHHHhC
Confidence 887765 5778999999999999998777777777766532 68999999999997643 2333556666666
Q ss_pred C
Q 010254 510 M 510 (514)
Q Consensus 510 ~ 510 (514)
+
T Consensus 153 ~ 153 (599)
T 3cb4_D 153 I 153 (599)
T ss_dssp C
T ss_pred C
Confidence 5
No 363
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.28 E-value=2e-11 Score=117.56 Aligned_cols=76 Identities=14% Similarity=0.046 Sum_probs=64.1
Q ss_pred CcEEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 010254 416 GTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSS----------DESSWKRATELLVEVASYGEDTGFEVPCLIV 485 (514)
Q Consensus 416 ~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv 485 (514)
+...+.+||++|++.+++++ ..++++++++|+|||++ +..++.+...|+..+...... .++|++|+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w--~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~--~~~piiLv 234 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXW--VSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL--KGAVKLIF 234 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHH--HTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG--TTSEEEEE
T ss_pred eeeeeccccCCCcccccccH--HHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc--CCCeEEEE
Confidence 34677899999999999998 68999999999999999 678899998898887764321 27999999
Q ss_pred EeCCCCcccc
Q 010254 486 AAKDDLDSFA 495 (514)
Q Consensus 486 ~nK~Dl~~~~ 495 (514)
+||+|+..++
T Consensus 235 ~NK~DL~~ek 244 (340)
T 4fid_A 235 LNKMDLFEEK 244 (340)
T ss_dssp EECHHHHHHH
T ss_pred EECchhhhhh
Confidence 9999997644
No 364
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.28 E-value=4.8e-12 Score=131.08 Aligned_cols=118 Identities=12% Similarity=0.087 Sum_probs=80.3
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCC--CCCCCCCCccEEEEEEECCCC-----------------------------
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFS--DNYTPTTDERYAVNVVDQPGG----------------------------- 416 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~----------------------------- 416 (514)
...+|+|+|.+|+|||||+|+|++..+. .+...+.+++.... .....
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i--~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAV--MHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEE--ECCSSSEEECCC------------------CCCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEE--EECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 4579999999999999999999999875 23322333332211 11100
Q ss_pred -c----------EEEEEEecCChhH-----------HHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCC
Q 010254 417 -T----------KKTVVLREIPEEA-----------VAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGE 474 (514)
Q Consensus 417 -~----------~~~~i~dt~g~~~-----------~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~ 474 (514)
. ..+.+|||+|... +.... ...+..+|++++|+|+++....+....|+..+...
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~--~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-- 217 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVL--RWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH-- 217 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHH--HHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHH--HHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--
Confidence 0 2356899999653 33333 35678999999999998754455566666665432
Q ss_pred CCCCCCcEEEEEeCCCCcccc
Q 010254 475 DTGFEVPCLIVAAKDDLDSFA 495 (514)
Q Consensus 475 ~~~~~~p~ilv~nK~Dl~~~~ 495 (514)
+.|+++|+||+|+...+
T Consensus 218 ----~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 218 ----EDKIRVVLNKADMVETQ 234 (550)
T ss_dssp ----GGGEEEEEECGGGSCHH
T ss_pred ----CCCEEEEEECCCccCHH
Confidence 58999999999998643
No 365
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.28 E-value=6.9e-12 Score=127.49 Aligned_cols=133 Identities=11% Similarity=0.092 Sum_probs=85.9
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCC--CCCCC----------------------C-------CCCCCccEEEEEEECCCC
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGR--PFSDN----------------------Y-------TPTTDERYAVNVVDQPGG 416 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~--~~~~~----------------------~-------~~~~~~~~~~~~~~~~~~ 416 (514)
..++|+++|.+|+|||||+++|++. .+... . ....+.+.....+.. .
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~--~ 83 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET--P 83 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC--S
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec--C
Confidence 4589999999999999999999864 11100 0 011222222223333 3
Q ss_pred cEEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCCChh---hHH---HHHHHHHHHHhcCCCCCCCCc-EEEEEeCC
Q 010254 417 TKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDES---SWK---RATELLVEVASYGEDTGFEVP-CLIVAAKD 489 (514)
Q Consensus 417 ~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~---s~~---~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~ 489 (514)
...+.+|||+|++.|...+ ...+..+|++|+|+|+++.. +|+ ....++..+... ++| +++|+||+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~--~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~------~v~~iivviNK~ 155 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNM--ITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL------GVRQLIVAVNKM 155 (458)
T ss_dssp SEEEEEEECCCCTTHHHHH--HHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT------TCCEEEEEEECG
T ss_pred CceEEEEECCCcHHHHHHH--HhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc------CCCeEEEEEEcc
Confidence 4567899999999987766 57789999999999999762 331 222232222222 465 99999999
Q ss_pred CCcc--cc---cchhhHHHHHHHcCC
Q 010254 490 DLDS--FA---MAIQDSTRVFTFLVM 510 (514)
Q Consensus 490 Dl~~--~~---~~~~~~~~~~~~~~~ 510 (514)
|+.. +. ....+..++++.+++
T Consensus 156 Dl~~~~~~~~~~i~~~~~~~l~~~g~ 181 (458)
T 1f60_A 156 DSVKWDESRFQEIVKETSNFIKKVGY 181 (458)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 9973 11 224456667777663
No 366
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.27 E-value=2.3e-11 Score=126.28 Aligned_cols=133 Identities=20% Similarity=0.182 Sum_probs=86.9
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCC--CC---------CCCC----CCCCcc--EEEEEEEC-CCCcEEEEEEecCChh
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRP--FS---------DNYT----PTTDER--YAVNVVDQ-PGGTKKTVVLREIPEE 429 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~--~~---------~~~~----~~~~~~--~~~~~~~~-~~~~~~~~i~dt~g~~ 429 (514)
...+|+++|.+++|||||+++|+... .. +... ...+.. .....+.. ++....+.+|||+|++
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 45789999999999999999997531 10 0000 001111 11111221 2223566699999999
Q ss_pred HHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcC
Q 010254 430 AVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV 509 (514)
Q Consensus 430 ~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 509 (514)
.|.... ...++.+|++|+|+|+++..+++....|...... ++|+++|+||+|+...+ ......++++.++
T Consensus 85 dF~~ev--~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~-------~ipiIvviNKiDl~~a~-~~~v~~el~~~lg 154 (600)
T 2ywe_A 85 DFSYEV--SRALAACEGALLLIDASQGIEAQTVANFWKAVEQ-------DLVIIPVINKIDLPSAD-VDRVKKQIEEVLG 154 (600)
T ss_dssp GGHHHH--HHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT-------TCEEEEEEECTTSTTCC-HHHHHHHHHHTSC
T ss_pred hHHHHH--HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC-------CCCEEEEEeccCccccC-HHHHHHHHHHhhC
Confidence 887655 4678999999999999998888888777665532 69999999999997643 2233455666665
Q ss_pred C
Q 010254 510 M 510 (514)
Q Consensus 510 ~ 510 (514)
+
T Consensus 155 ~ 155 (600)
T 2ywe_A 155 L 155 (600)
T ss_dssp C
T ss_pred C
Confidence 5
No 367
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.27 E-value=1.6e-11 Score=130.80 Aligned_cols=122 Identities=17% Similarity=0.184 Sum_probs=81.9
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccE---------EEEEEECCCC---------------------
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERY---------AVNVVDQPGG--------------------- 416 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~--------------------- 416 (514)
+..++|+|+|.+|+|||||+|+|++.++.++...+++... .......++.
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 3468999999999999999999999987665543333110 0011110000
Q ss_pred -----------------------c---EEEEEEecCChhHHHhh-hcCccccccCcEEEEEEeCCChhhHHHHHHHHHHH
Q 010254 417 -----------------------T---KKTVVLREIPEEAVAKL-LSNKDSLAACDIAVFVHDSSDESSWKRATELLVEV 469 (514)
Q Consensus 417 -----------------------~---~~~~i~dt~g~~~~~~~-~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~ 469 (514)
. ..+.+|||+|....... .....+++.+|++++|+|+++..+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 0 23568999996553211 11246778999999999999887777766665444
Q ss_pred HhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 470 ASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 470 ~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
... +.|+++|+||+|+...
T Consensus 227 ~~~------~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 227 KGR------GLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TTS------CCCEEEEEECGGGGGG
T ss_pred Hhh------CCCEEEEEECcccccc
Confidence 322 5789999999998754
No 368
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.27 E-value=2e-11 Score=117.14 Aligned_cols=76 Identities=11% Similarity=0.062 Sum_probs=62.3
Q ss_pred CcEEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 010254 416 GTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSS----------DESSWKRATELLVEVASYGEDTGFEVPCLIV 485 (514)
Q Consensus 416 ~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv 485 (514)
+...+.+|||+|++.+++++ ..++++++++|+|||++ +..++++...|+..+...... .++|++|+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w--~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~--~~~~iiL~ 240 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKW--IHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF--QNSSVILF 240 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTG--GGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG--TTCEEEEE
T ss_pred eceeeEEEEcCCchhHHHHH--HHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc--CCceEEEE
Confidence 34677899999999999998 68999999999999654 667788888888887654321 27999999
Q ss_pred EeCCCCcccc
Q 010254 486 AAKDDLDSFA 495 (514)
Q Consensus 486 ~nK~Dl~~~~ 495 (514)
+||+|+..++
T Consensus 241 ~NK~DL~~~k 250 (327)
T 3ohm_A 241 LNKKDLLEEK 250 (327)
T ss_dssp EECHHHHHHH
T ss_pred EECchhhhhh
Confidence 9999997654
No 369
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.26 E-value=1.6e-11 Score=121.84 Aligned_cols=87 Identities=17% Similarity=0.098 Sum_probs=46.6
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCcc--EEEEEEE--CC----------------CC--cEEEEEEecCC
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDER--YAVNVVD--QP----------------GG--TKKTVVLREIP 427 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~--~~~~~~~--~~----------------~~--~~~~~i~dt~g 427 (514)
+||+++|.||||||||+|+|++........|.+|.. ..+..+. .+ ++ ...+.+|||+|
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 479999999999999999999987322222222222 2211111 10 11 24567999999
Q ss_pred hhHH----Hhhh-cCccccccCcEEEEEEeCCCh
Q 010254 428 EEAV----AKLL-SNKDSLAACDIAVFVHDSSDE 456 (514)
Q Consensus 428 ~~~~----~~~~-~~~~~~~~~d~vilv~D~~~~ 456 (514)
.... ..+. .....++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7532 2222 123567999999999999875
No 370
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.25 E-value=5.5e-12 Score=124.56 Aligned_cols=118 Identities=14% Similarity=0.128 Sum_probs=74.5
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEE-EE---------------------------------------
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYA-VN--------------------------------------- 409 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~-~~--------------------------------------- 409 (514)
.+|+|+|++|||||||+|+|++..+.+....+.+.... +.
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 48999999999999999999998875444322221100 00
Q ss_pred --------------EEECCCCcEEEEEEecCChhHH-------------HhhhcCccccccCcEEEEEEeCCChhhHHHH
Q 010254 410 --------------VVDQPGGTKKTVVLREIPEEAV-------------AKLLSNKDSLAACDIAVFVHDSSDESSWKRA 462 (514)
Q Consensus 410 --------------~~~~~~~~~~~~i~dt~g~~~~-------------~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~ 462 (514)
.+..+ ....+.+|||+|...+ ..+. ..+++++|++|+|+|.++.....
T Consensus 115 ~g~~~~~s~~~i~l~i~~~-~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~--~~~i~~~d~iilvv~~~~~~~~~-- 189 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSP-NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMV--RSYIEKPNCIILAISPANQDLAT-- 189 (360)
T ss_dssp SCTTCCCCCSCEEEEEEET-TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHH--HHHHHSSSEEEEEEEETTSCGGG--
T ss_pred cCCCCCcccceEEEEEeCC-CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHH--HHHhhcCCeEEEEeecccCCcCC--
Confidence 01111 1234568999996553 3333 56789999999999876543221
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 010254 463 TELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 495 (514)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 495 (514)
..|+..+..... .+.|+++|+||+|+....
T Consensus 190 ~~~~~l~~~~~~---~~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 190 SDAIKISREVDP---SGDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp CHHHHHHHHSCT---TCTTEEEEEECGGGCCTT
T ss_pred HHHHHHHHHhcc---cCCCEEEEEeCCccCCCc
Confidence 223333332221 168999999999997643
No 371
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.25 E-value=8.9e-12 Score=128.35 Aligned_cols=133 Identities=16% Similarity=0.074 Sum_probs=81.6
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCC---------------C-----CCCCccEEEEEEECCCCcEEEEEEecCC
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY---------------T-----PTTDERYAVNVVDQPGGTKKTVVLREIP 427 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~---------------~-----~~~~~~~~~~~~~~~~~~~~~~i~dt~g 427 (514)
..++|+++|.+|+|||||+++|+...-.... . ...+.........+..+...+.+|||+|
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 3579999999999999999999863211100 0 0111111111111222446777999999
Q ss_pred hhHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHH
Q 010254 428 EEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTF 507 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 507 (514)
++.|.... ...++.+|++|+|+|+++....+. ..++..+.. . ++|+++++||+|+.... ......++.+.
T Consensus 92 ~~df~~~~--~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~-~-----~ipiivviNK~Dl~~~~-~~~~~~~i~~~ 161 (529)
T 2h5e_A 92 HEDFSEDT--YRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL-R-----DTPILTFMNKLDRDIRD-PMELLDEVENE 161 (529)
T ss_dssp STTCCHHH--HHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT-T-----TCCEEEEEECTTSCCSC-HHHHHHHHHHH
T ss_pred ChhHHHHH--HHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH-c-----CCCEEEEEcCcCCcccc-HHHHHHHHHHH
Confidence 98876554 468899999999999998632221 222222222 1 69999999999997643 22334556665
Q ss_pred cCC
Q 010254 508 LVM 510 (514)
Q Consensus 508 ~~~ 510 (514)
++.
T Consensus 162 l~~ 164 (529)
T 2h5e_A 162 LKI 164 (529)
T ss_dssp HCC
T ss_pred hCC
Confidence 554
No 372
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.24 E-value=1.7e-11 Score=111.39 Aligned_cols=131 Identities=13% Similarity=0.059 Sum_probs=76.1
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChh----------HHHhhhc
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEE----------AVAKLLS 436 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~----------~~~~~~~ 436 (514)
....+|+++|++|||||||+|+|++..+...+.++.++......+.+. + ...+|||+|.. .+.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA-D--GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE-T--TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec-C--CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 345789999999999999999999987543333444443333344443 2 34578999963 2222210
Q ss_pred -CccccccCcEEEEEEeCCChhhHHH--HHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc--cc-hhhHHHHHHHcC
Q 010254 437 -NKDSLAACDIAVFVHDSSDESSWKR--ATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA--MA-IQDSTRVFTFLV 509 (514)
Q Consensus 437 -~~~~~~~~d~vilv~D~~~~~s~~~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~-~~~~~~~~~~~~ 509 (514)
.......++++++|+|+++..++.. +..|+ .. . +.|+++|+||+|+.... +. ...+.+++.+.+
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~-~-----~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~ 170 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD-S-----NIAVLVLLTKADKLASGARKAQLNMVREAVLAFN 170 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH-T-----TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH-c-----CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcC
Confidence 0112257899999999998755432 22232 22 2 68999999999987642 22 345556665543
No 373
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.24 E-value=1.1e-11 Score=120.20 Aligned_cols=119 Identities=17% Similarity=0.186 Sum_probs=71.2
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCcc----EEEE----------------------------------
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDER----YAVN---------------------------------- 409 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~----~~~~---------------------------------- 409 (514)
...+|+|+|.+|||||||+|+|++..+........+.. ....
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 45689999999999999999999988732221100000 0000
Q ss_pred ---------------------EEECCCCcEEEEEEecCChhH-------------HHhhhcCccccccCcEEEEEEeCCC
Q 010254 410 ---------------------VVDQPGGTKKTVVLREIPEEA-------------VAKLLSNKDSLAACDIAVFVHDSSD 455 (514)
Q Consensus 410 ---------------------~~~~~~~~~~~~i~dt~g~~~-------------~~~~~~~~~~~~~~d~vilv~D~~~ 455 (514)
.+..+ ....+.+|||+|... +.... ..+++.+|++++|+|+++
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~iilvvd~~~ 179 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSP-HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMV--MAYIKKQNAIIVAVTPAN 179 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEET-TSCSEEEEECCCCC---------CSHHHHHHHH--HHHHHSTTEEEEEEEESS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecC-CCCCcEEEECCCCccCCCCCCchhHHHHHHHHH--HHHHcCCCeEEEEEEecC
Confidence 01111 224567899999643 33222 567889999999999743
Q ss_pred hh-hHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc
Q 010254 456 ES-SWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA 495 (514)
Q Consensus 456 ~~-s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 495 (514)
.. +-.....+...+.. . +.|+++|+||+|+....
T Consensus 180 ~~~~~~~~~~i~~~~~~-~-----~~~~i~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 180 TDLANSDALQLAKEVDP-E-----GKRTIGVITKLDLMDKG 214 (315)
T ss_dssp SCSTTCSHHHHHHHHCS-S-----CSSEEEEEECTTSSCSS
T ss_pred cchhhhHHHHHHHHhCC-C-----CCcEEEEEcCcccCCcc
Confidence 32 11111122222322 1 69999999999997643
No 374
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.24 E-value=8.1e-12 Score=127.29 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=73.9
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCC--CCC----------------------CC-------CCCCCccEEEEEEECCC
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRP--FSD----------------------NY-------TPTTDERYAVNVVDQPG 415 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~--~~~----------------------~~-------~~~~~~~~~~~~~~~~~ 415 (514)
+..++|+++|.+++|||||+++|+... +.. .. ....|.......+..+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 456899999999999999999997421 110 00 0111111211223333
Q ss_pred CcEEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCCCh---hhHHHHHHHHHH--HHhcCCCCCCCCc-EEEEEeCC
Q 010254 416 GTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDE---SSWKRATELLVE--VASYGEDTGFEVP-CLIVAAKD 489 (514)
Q Consensus 416 ~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~---~s~~~~~~~~~~--~~~~~~~~~~~~p-~ilv~nK~ 489 (514)
...+.+|||+|++.|...+ ...+..+|++|+|+|+++. .+|+....+... +.... ++| +|+|+||+
T Consensus 120 -~~~~~iiDtPGh~~f~~~~--~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~-----~vp~iivviNK~ 191 (467)
T 1r5b_A 120 -HRRFSLLDAPGHKGYVTNM--INGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ-----GINHLVVVINKM 191 (467)
T ss_dssp -SEEEEECCCCC-------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT-----TCSSEEEEEECT
T ss_pred -CeEEEEEECCCcHHHHHHH--HhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc-----CCCEEEEEEECc
Confidence 4567799999999987655 5678999999999999986 334322122211 11222 577 99999999
Q ss_pred CCccc-----c--cchhhHHHHHHHc
Q 010254 490 DLDSF-----A--MAIQDSTRVFTFL 508 (514)
Q Consensus 490 Dl~~~-----~--~~~~~~~~~~~~~ 508 (514)
|+... + ....+..++++++
T Consensus 192 Dl~~~~~~~~~~~~i~~e~~~~l~~~ 217 (467)
T 1r5b_A 192 DEPSVQWSEERYKECVDKLSMFLRRV 217 (467)
T ss_dssp TSTTCSSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHh
Confidence 99541 1 1234566666665
No 375
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.23 E-value=1.9e-11 Score=119.16 Aligned_cols=121 Identities=16% Similarity=0.101 Sum_probs=86.5
Q ss_pred eeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCC----------cccHHHHHHHHHHHHHhc--CCCCcEEEE
Q 010254 58 FYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDR----------PETLDELSTFWLPELRRL--EVKVPVIVV 125 (514)
Q Consensus 58 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~----------~~s~~~~~~~~~~~l~~~--~~~~pvilv 125 (514)
+..+++.+.+|||+|++.++..+..++++++++|||||+++ ..++.+... |+..+... ..+.|+|||
T Consensus 188 ~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~-~~~~i~~~~~~~~~piiLv 266 (353)
T 1cip_A 188 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK-LFDSICNNKWFTDTSIILF 266 (353)
T ss_dssp EEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEE
T ss_pred EeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH-HHHHHHcCccccCCcEEEE
Confidence 34457899999999999999999999999999999999998 455776665 66555542 257999999
Q ss_pred EecccCccccc--------------chhHhhhhHHHHHHHh--------ccCcEEEcCccccccceecCCCCChhhHHHH
Q 010254 126 GCKLDLRDENQ--------------QVSLEQVMMPIMQQFR--------EIETCIECSALKQIQVKCFNSPLQPSEIVGV 183 (514)
Q Consensus 126 ~NK~Dl~~~~~--------------~~~~~~~~~~~~~~~~--------~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L 183 (514)
+||+|+....- ..+.++....+...+. ....+++|||+++. |+.++
T Consensus 267 ~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~------------nV~~v 334 (353)
T 1cip_A 267 LNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTK------------NVQFV 334 (353)
T ss_dssp EECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHH------------HHHHH
T ss_pred EECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCch------------hHHHH
Confidence 99999864310 1223333222222211 11168999999999 88888
Q ss_pred HHHHHHHh
Q 010254 184 KRVVQEKL 191 (514)
Q Consensus 184 ~~~i~~~~ 191 (514)
.+.+.+.+
T Consensus 335 F~~v~~~i 342 (353)
T 1cip_A 335 FDAVTDVI 342 (353)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776654
No 376
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.23 E-value=1.9e-10 Score=123.24 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=80.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC--------CCCC--CCCC-----CCCCcccc-----ccee-----CCeeEEEEEe
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAAD--------TFPA--NVPP-----VLPPTRLP-----EDFY-----PDRVPITIID 69 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~--------~~~~--~~~~-----~~~~tt~~-----~~~~-----~~~~~~~l~D 69 (514)
+--+|+|+|+.++|||||..+|+.. +... .+.. ...+.|+. ..+. .+++.++|+|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 3447999999999999999999721 1100 0000 11122211 1111 2368999999
Q ss_pred CCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc
Q 010254 70 TPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 70 t~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 134 (514)
|||+-+|......+++-+|++|+|+|+..+-..+... +.....+. ++|.++++||+|....
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~--v~~~a~~~--~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSET--VWRQANKY--GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH--HHHHHHHH--TCCEEEEEECSSSTTC
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHH--HHHHHHHc--CCCeEEEEccccccCc
Confidence 9999999999999999999999999999877766554 44444444 8999999999997543
No 377
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.23 E-value=2.3e-11 Score=118.58 Aligned_cols=73 Identities=14% Similarity=0.116 Sum_probs=59.8
Q ss_pred CeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCC----------CcccHHHHHHHHHHHHHhc--CCCCcEEEEEec
Q 010254 61 DRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACD----------RPETLDELSTFWLPELRRL--EVKVPVIVVGCK 128 (514)
Q Consensus 61 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~----------~~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK 128 (514)
+.+.+.||||+|++.+...+..++++++++|+|||++ +..++++... |...+... .++.|++||+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~-~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHH-HHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHH-HHHHHHhccccCCCeEEEEEEC
Confidence 4689999999999999999999999999999999998 6778887775 66665543 257999999999
Q ss_pred ccCccc
Q 010254 129 LDLRDE 134 (514)
Q Consensus 129 ~Dl~~~ 134 (514)
+|+...
T Consensus 260 ~DL~~~ 265 (354)
T 2xtz_A 260 FDIFEK 265 (354)
T ss_dssp HHHHHH
T ss_pred cchhhh
Confidence 998643
No 378
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.22 E-value=4e-11 Score=119.31 Aligned_cols=141 Identities=14% Similarity=0.128 Sum_probs=80.6
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCC------CCCccEEEEE--EECCCCcEEEEEEecCChhHHH-----
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTP------TTDERYAVNV--VDQPGGTKKTVVLREIPEEAVA----- 432 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~i~dt~g~~~~~----- 432 (514)
....++|+++|++|||||||+|+|++..+...... ..+....... +...+-.....+||++|...+.
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 34558999999999999999999999876422211 1111111111 1112122345689999965431
Q ss_pred --hh-----------h-----cCccccccCcEEEEEEeCCCh-hhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCCc
Q 010254 433 --KL-----------L-----SNKDSLAACDIAVFVHDSSDE-SSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDLD 492 (514)
Q Consensus 433 --~~-----------~-----~~~~~~~~~d~vilv~D~~~~-~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 492 (514)
.+ . -++..+.++++.+++|+.... .++...+ .|+..+.. ++|+|+|+||+|+.
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-------~v~iIlVinK~Dll 180 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-------KVNIIPLIAKADTL 180 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-------TSEEEEEEESTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-------cCcEEEEEEcccCc
Confidence 11 0 023455666665556555433 3455554 46666531 58999999999997
Q ss_pred ccc-cc--hhhHHHHHHHcCCccc
Q 010254 493 SFA-MA--IQDSTRVFTFLVMVLY 513 (514)
Q Consensus 493 ~~~-~~--~~~~~~~~~~~~~~~~ 513 (514)
..+ +. ...+.+++..+++++|
T Consensus 181 ~~~ev~~~k~~i~~~~~~~~i~~~ 204 (418)
T 2qag_C 181 TPEECQQFKKQIMKEIQEHKIKIY 204 (418)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred cHHHHHHHHHHHHHHHHHcCCeEE
Confidence 644 22 3677888888888876
No 379
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.21 E-value=2.4e-11 Score=132.04 Aligned_cols=135 Identities=13% Similarity=0.053 Sum_probs=87.2
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCC-------CCC--CC-----CCCCCccEEEEEEECCCCcEEEEEEecCChhHHH
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRP-------FSD--NY-----TPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVA 432 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~-------~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~ 432 (514)
...++|+++|.+++|||||+++|++.. +.. .. ..+.+.+.....+.+..+...+.+|||+|++.|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 456899999999999999999998641 100 00 0122222221222333345677899999999997
Q ss_pred hhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCc-EEEEEeCCCCccccc----chhhHHHHHHH
Q 010254 433 KLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVP-CLIVAAKDDLDSFAM----AIQDSTRVFTF 507 (514)
Q Consensus 433 ~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~----~~~~~~~~~~~ 507 (514)
..+ ...+..+|++|+|+|+++....+ ...++..+... ++| +|+|+||+|+...+. ...+..+++++
T Consensus 374 ~~m--i~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l------gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~ 444 (1289)
T 3avx_A 374 KNM--ITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV------GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ 444 (1289)
T ss_dssp HHH--HHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH------TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc------CCCeEEEEEeecccccchhhHHHHHHHHHHHHHh
Confidence 665 56789999999999999864332 33344444333 588 799999999975321 23466777777
Q ss_pred cCC
Q 010254 508 LVM 510 (514)
Q Consensus 508 ~~~ 510 (514)
+++
T Consensus 445 ~G~ 447 (1289)
T 3avx_A 445 YDF 447 (1289)
T ss_dssp TTS
T ss_pred ccc
Confidence 763
No 380
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.21 E-value=2.4e-12 Score=130.71 Aligned_cols=114 Identities=16% Similarity=0.154 Sum_probs=78.0
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEE
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAV 448 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vi 448 (514)
..+|+++|.+++|||||+++|.+..+.....+..+.+.....+..+ + ..+.+|||+|++.|...+ ...+..+|+++
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~-~-~~i~~iDTPGhe~f~~~~--~~~~~~aD~aI 79 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE-N-GMITFLDTPGHAAFTSMR--ARGAQATDIVV 79 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT-S-SCCCEECCCTTTCCTTSB--CSSSBSCSSEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC-C-EEEEEEECCCcHHHHHHH--HHHHhhCCEEE
Confidence 3679999999999999999998766543332333322222223333 2 356689999999988766 56788999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 449 FVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 449 lv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
+|+|+++....+....| ..+... ++|+++++||+|+..
T Consensus 80 LVVda~~g~~~qT~e~l-~~~~~~------~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI-QHAKAA------QVPVVVAVNKIDKPE 117 (501)
T ss_dssp EEEETTTBSCTTTHHHH-HHHHHT------TCCEEEEEECSSSST
T ss_pred EEeecccCccHHHHHHH-HHHHhc------CceEEEEEEeccccc
Confidence 99999884222212222 222222 699999999999975
No 381
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.19 E-value=1.3e-11 Score=128.49 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=76.1
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCcc--EEEEEEE--------CCC------CcEEEEEEecCChhHHH
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDER--YAVNVVD--------QPG------GTKKTVVLREIPEEAVA 432 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~--~~~~~~~--------~~~------~~~~~~i~dt~g~~~~~ 432 (514)
..+|+++|.+|+|||||+++|++..+........+.+ ....... ..+ ....+.+|||+|++.|.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 4689999999999999999999765533221111111 1111111 000 11247799999999987
Q ss_pred hhhcCccccccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 433 KLLSNKDSLAACDIAVFVHDSSD---ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 433 ~~~~~~~~~~~~d~vilv~D~~~---~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
... ...++.+|++|+|+|+++ +.+++.+.. +... ++|+++++||+|+..
T Consensus 85 ~~~--~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~~------~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 85 TLR--KRGGALADLAILIVDINEGFKPQTQEALNI----LRMY------RTPFVVAANKIDRIH 136 (594)
T ss_dssp TSB--CSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHHT------TCCEEEEEECGGGST
T ss_pred HHH--HHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHHc------CCeEEEEeccccccc
Confidence 765 467889999999999999 666654432 2222 699999999999964
No 382
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.19 E-value=1.8e-11 Score=120.52 Aligned_cols=118 Identities=15% Similarity=0.140 Sum_probs=79.6
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEE
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFV 450 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv 450 (514)
+|+++|.+++|||||+++|+. ...|.+.....+... ...+.+|||+|+++|.... ...++.+|++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~~~~~~~~--~~~i~iiDtPGh~~f~~~~--~~~~~~aD~ailV 90 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK--------KGTSSDITMYNNDKE--GRNMVFVDAHSYPKTLKSL--ITALNISDIAVLC 90 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE--------EEEESSSEEEEECSS--SSEEEEEECTTTTTCHHHH--HHHHHTCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHh--------CCEEEEeeEEEEecC--CeEEEEEECCChHHHHHHH--HHHHHHCCEEEEE
Confidence 899999999999999999991 122222333334443 3457789999998886544 4677899999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcCCCCCCCCcE-EEEEe-CCCCccccc-c--hhhHHHHHHHcC
Q 010254 451 HDSSDESSWKRATELLVEVASYGEDTGFEVPC-LIVAA-KDDLDSFAM-A--IQDSTRVFTFLV 509 (514)
Q Consensus 451 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~-ilv~n-K~Dl~~~~~-~--~~~~~~~~~~~~ 509 (514)
+| ++. .+....+++..+... ++|. ++++| |+|+ ..+. . .++.++++++++
T Consensus 91 vd-~~g-~~~qt~e~~~~~~~~------~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~ 145 (370)
T 2elf_A 91 IP-PQG-LDAHTGECIIALDLL------GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTV 145 (370)
T ss_dssp EC-TTC-CCHHHHHHHHHHHHT------TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTST
T ss_pred Ec-CCC-CcHHHHHHHHHHHHc------CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcC
Confidence 99 543 344455555555443 5777 88999 9999 5332 1 244555555443
No 383
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.18 E-value=3e-11 Score=111.14 Aligned_cols=153 Identities=12% Similarity=0.063 Sum_probs=83.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC---CCCccccc-cee------------------------------C
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPV---LPPTRLPE-DFY------------------------------P 60 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~---~~~tt~~~-~~~------------------------------~ 60 (514)
..++|+|+|++|||||||+++|+...+....... ..+++... .+. .
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4589999999999999999999976432211110 00100000 000 0
Q ss_pred CeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhH
Q 010254 61 DRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSL 140 (514)
Q Consensus 61 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~ 140 (514)
.+..+.++|++|.-.... .+-...+.++.++|.......... .... . +.|+++|+||+|+.+. +....
T Consensus 117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~~---~~~~---~--~~~~iiv~NK~Dl~~~-~~~~~ 184 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIEK---HPGI---M--KTADLIVINKIDLADA-VGADI 184 (226)
T ss_dssp GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTTT---CHHH---H--TTCSEEEEECGGGHHH-HTCCH
T ss_pred CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHhh---hhhH---h--hcCCEEEEeccccCch-hHHHH
Confidence 122466666666311110 011234455666664322111100 1111 2 5788999999998653 11122
Q ss_pred hhhhHHHHHHHhccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 141 EQVMMPIMQQFREIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 141 ~~~~~~~~~~~~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
+ ....+.+.+....+++++||++|. |+++|.+.+.+.+.
T Consensus 185 ~-~~~~~~~~~~~~~~~~~~Sa~~g~------------gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 185 K-KMENDAKRINPDAEVVLLSLKTME------------GFDKVLEFIEKSVK 223 (226)
T ss_dssp H-HHHHHHHHHCTTSEEEECCTTTCT------------THHHHHHHHHHHHH
T ss_pred H-HHHHHHHHhCCCCeEEEEEecCCC------------CHHHHHHHHHHHHH
Confidence 2 223334444322379999999999 99999998877653
No 384
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.18 E-value=5.4e-11 Score=116.40 Aligned_cols=121 Identities=19% Similarity=0.203 Sum_probs=80.2
Q ss_pred eeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCC----------cccHHHHHHHHHHHHHhc--CCCCcEEEE
Q 010254 58 FYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDR----------PETLDELSTFWLPELRRL--EVKVPVIVV 125 (514)
Q Consensus 58 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~----------~~s~~~~~~~~~~~l~~~--~~~~pvilv 125 (514)
+..+++.+.+|||+|++.+...+..++++++++|||||+++ ..++.+... |...+... ..+.|+||+
T Consensus 196 ~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~-~~~~i~~~~~~~~~piILv 274 (362)
T 1zcb_A 196 FEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN-IFETIVNNRVFSNVSIILF 274 (362)
T ss_dssp EEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEE
T ss_pred eeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHH-HHHHHhcchhhCCCCEEEE
Confidence 34457899999999999999999999999999999999998 667877765 55555443 357999999
Q ss_pred EecccCcccc---------------cchhHhhhhHHHHHHHh--------ccCcEEEcCccccccceecCCCCChhhHHH
Q 010254 126 GCKLDLRDEN---------------QQVSLEQVMMPIMQQFR--------EIETCIECSALKQIQVKCFNSPLQPSEIVG 182 (514)
Q Consensus 126 ~NK~Dl~~~~---------------~~~~~~~~~~~~~~~~~--------~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~ 182 (514)
+||+|+.... ...+.++....+...|. ....+++|||+++. |++.
T Consensus 275 ~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~------------nV~~ 342 (362)
T 1zcb_A 275 LNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTE------------NIRL 342 (362)
T ss_dssp EECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHH------------HHHH
T ss_pred EEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCch------------hHHH
Confidence 9999986431 01333333332222221 11267899999999 7777
Q ss_pred HHHHHHHHh
Q 010254 183 VKRVVQEKL 191 (514)
Q Consensus 183 L~~~i~~~~ 191 (514)
+.+.+.+.+
T Consensus 343 vF~~v~~~i 351 (362)
T 1zcb_A 343 VFRDVKDTI 351 (362)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776544
No 385
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.16 E-value=1e-10 Score=113.64 Aligned_cols=86 Identities=20% Similarity=0.158 Sum_probs=56.1
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCc---------------EEEEEEecCChhHHHh-
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGT---------------KKTVVLREIPEEAVAK- 433 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~dt~g~~~~~~- 433 (514)
++|+++|.||||||||+|+|++........|.+|.......+.+++.. ....+|||+|...+.+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 689999999999999999999887433332333333333345555211 3567999999765432
Q ss_pred ---hhc-CccccccCcEEEEEEeCCC
Q 010254 434 ---LLS-NKDSLAACDIAVFVHDSSD 455 (514)
Q Consensus 434 ---~~~-~~~~~~~~d~vilv~D~~~ 455 (514)
+.. ....++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 221 1235789999999999986
No 386
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.16 E-value=8.4e-11 Score=115.89 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=63.1
Q ss_pred CeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCC----------cccHHHHHHHHHHHHHhc--CCCCcEEEEEec
Q 010254 61 DRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDR----------PETLDELSTFWLPELRRL--EVKVPVIVVGCK 128 (514)
Q Consensus 61 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~----------~~s~~~~~~~~~~~l~~~--~~~~pvilv~NK 128 (514)
+++.+.||||+|++.+...+..++++++++|||||+++ ..++++... |+..+... .++.|+|||+||
T Consensus 215 ~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~-~~~~i~~~~~~~~~piiLvgNK 293 (402)
T 1azs_C 215 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN-LFKSIWNNRWLRTISVILFLNK 293 (402)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH-HHHHHHTCTTCSSCCEEEEEEC
T ss_pred CCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHH-HHHHHHhcccCCCCeEEEEEEC
Confidence 45789999999999999999999999999999999998 788888776 77776654 357999999999
Q ss_pred ccCccc
Q 010254 129 LDLRDE 134 (514)
Q Consensus 129 ~Dl~~~ 134 (514)
+|+...
T Consensus 294 ~DL~~~ 299 (402)
T 1azs_C 294 QDLLAE 299 (402)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 998643
No 387
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.16 E-value=2.4e-12 Score=134.58 Aligned_cols=119 Identities=18% Similarity=0.119 Sum_probs=62.0
Q ss_pred cCCeEEEEEeCCCCCChHHHHHHhhCCCCCCCC-------------------------------CCCCCccEEEEEEECC
Q 010254 366 ERNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY-------------------------------TPTTDERYAVNVVDQP 414 (514)
Q Consensus 366 ~~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 414 (514)
.+..++|+++|.+|+|||||+++|++....... .+.+|.+.....+..
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~- 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES- 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence 345689999999999999999999643211100 112222222222222
Q ss_pred CCcEEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCCChh---hH--HHHHHHHHHHHhcCCCCCCCCc-EEEEEeC
Q 010254 415 GGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDES---SW--KRATELLVEVASYGEDTGFEVP-CLIVAAK 488 (514)
Q Consensus 415 ~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~---s~--~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK 488 (514)
+...+.+|||+|++.|...+ ...+..+|++|+|+|+++.. .+ ......+..+.... ++| +|+|+||
T Consensus 253 -~~~~i~iiDTPGh~~f~~~~--~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l-----gip~iIvviNK 324 (592)
T 3mca_A 253 -DKKIYEIGDAPGHRDFISGM--IAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL-----GISEIVVSVNK 324 (592)
T ss_dssp -------CCEEESSSEEEEEC--CC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS-----SCCCEEEEEEC
T ss_pred -CCeEEEEEECCChHHHHHHH--HHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc-----CCCeEEEEEec
Confidence 33566789999998876554 57788999999999998642 12 11222222222222 466 9999999
Q ss_pred CCCcc
Q 010254 489 DDLDS 493 (514)
Q Consensus 489 ~Dl~~ 493 (514)
+|+..
T Consensus 325 iDl~~ 329 (592)
T 3mca_A 325 LDLMS 329 (592)
T ss_dssp GGGGT
T ss_pred ccccc
Confidence 99975
No 388
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.13 E-value=1.6e-10 Score=112.90 Aligned_cols=117 Identities=17% Similarity=0.122 Sum_probs=80.6
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhH--------HHhhhcCcc
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEA--------VAKLLSNKD 439 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~--------~~~~~~~~~ 439 (514)
...+|+++|.||||||||+|+|++........|.+|.+.....+.++ + ..+.++||+|-.. .... ..
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~-~-~~i~l~D~pGl~~~a~~~~~~g~~~---l~ 145 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK-G-AKIQMLDLPGIIDGAKDGRGRGKQV---IA 145 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEET-T-EEEEEEECGGGCCC-----CHHHHH---HH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeC-C-cEEEEEeCCCccCCchhhhHHHHHH---HH
Confidence 34689999999999999999999987655555666666666667766 3 4566789999311 1112 24
Q ss_pred ccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCc
Q 010254 440 SLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLD 492 (514)
Q Consensus 440 ~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 492 (514)
.++.||++++|+|++++ .........++....... .+.|.+++.||+|..
T Consensus 146 ~i~~ad~il~vvD~~~p--~~~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 146 VARTCNLLFIILDVNKP--LHHKQIIEKELEGVGIRL-NKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHCSEEEEEEETTSH--HHHHHHHHHHHHHTTEEE-TCCCCCEEEEECSSS
T ss_pred HHHhcCccccccccCcc--HHHHHHHHHHHHHhhHhh-ccCChhhhhhHhhhh
Confidence 67899999999999987 333333333333322111 157888999999974
No 389
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.13 E-value=6.5e-11 Score=126.10 Aligned_cols=130 Identities=16% Similarity=0.031 Sum_probs=84.8
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCC--CCC---CC-------------CCCCCccEEEEEEECCCCcEEEEEEecCChh
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRP--FSD---NY-------------TPTTDERYAVNVVDQPGGTKKTVVLREIPEE 429 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~--~~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~ 429 (514)
...+|+|+|.+|+|||||+++|+... +.. .. ....+.......+.. +...+.+|||+|+.
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~--~~~~i~liDTPG~~ 88 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW--KDHRINIIDTPGHV 88 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE--TTEEEEEECCCSST
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE--CCeEEEEEECcCcc
Confidence 46899999999999999999998321 100 00 001111111122222 34667799999998
Q ss_pred HHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcC
Q 010254 430 AVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV 509 (514)
Q Consensus 430 ~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 509 (514)
.|.... ...++.+|++|+|+|+++..+++....|... ... ++|+++|+||+|+.... ......++.+.++
T Consensus 89 df~~~~--~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~-~~~------~~p~ivviNKiD~~~~~-~~~~~~~l~~~l~ 158 (691)
T 1dar_A 89 DFTIEV--ERSMRVLDGAIVVFDSSQGVEPQSETVWRQA-EKY------KVPRIAFANKMDKTGAD-LWLVIRTMQERLG 158 (691)
T ss_dssp TCHHHH--HHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HHT------TCCEEEEEECTTSTTCC-HHHHHHHHHHTTC
T ss_pred chHHHH--HHHHHHCCEEEEEEECCCCcchhhHHHHHHH-HHc------CCCEEEEEECCCcccCC-HHHHHHHHHHHhC
Confidence 876655 5788999999999999998777776666543 332 69999999999997643 2223344444444
No 390
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.12 E-value=6.7e-11 Score=128.63 Aligned_cols=118 Identities=18% Similarity=0.094 Sum_probs=82.4
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCC----------------CC--CCCccEEEEEEE------------CCCC
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNY----------------TP--TTDERYAVNVVD------------QPGG 416 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~----------------~~--~~~~~~~~~~~~------------~~~~ 416 (514)
....||+|+|.+|+|||||+++|+........ .. |.........+. ..+.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 34679999999999999999999864211110 01 111111111222 1223
Q ss_pred cEEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 417 TKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 417 ~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
...+.+|||+|+..|.... ..+++.+|++|+|+|+++..+++....|..... . ++|+++|+||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~--~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~-~------~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEV--TAALRVTDGALVVVDTIEGVCVQTETVLRQALG-E------RIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHH--HHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH-T------TCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHH--HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-c------CCCeEEEEECCCcch
Confidence 4567799999998887665 578899999999999999888887766654432 2 699999999999873
No 391
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.11 E-value=6.6e-11 Score=116.10 Aligned_cols=88 Identities=11% Similarity=0.133 Sum_probs=49.5
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccc---eeCC-----------------eeEEEEEeCCC
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPED---FYPD-----------------RVPITIIDTPS 72 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~---~~~~-----------------~~~~~l~Dt~G 72 (514)
...+++|+|+|.||||||||+|+|++..+ .+...+.+|+... +... ...+.+|||||
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~---~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpG 95 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQA---SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAG 95 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC----------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCc---cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCC
Confidence 35679999999999999999999999874 2333444442211 1110 23599999999
Q ss_pred Cccchh-------hHHHhhhccCEEEEEEeCCCcccHH
Q 010254 73 SVEDRG-------KLGEELRRADAVVLTYACDRPETLD 103 (514)
Q Consensus 73 ~~~~~~-------~~~~~~~~ad~ii~v~d~~~~~s~~ 103 (514)
+..... ....+++++|++++|+|+++..++.
T Consensus 96 l~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~ 133 (396)
T 2ohf_A 96 LVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDIT 133 (396)
T ss_dssp -----------CCHHHHHHHTSSSEEEEEEC-------
T ss_pred cccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchh
Confidence 976543 3456789999999999988655443
No 392
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.10 E-value=7.4e-11 Score=125.70 Aligned_cols=117 Identities=15% Similarity=0.066 Sum_probs=79.3
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCC--CCCC---CCC-------------CCCCccEEEEEEECCCCcEEEEEEecCCh
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGR--PFSD---NYT-------------PTTDERYAVNVVDQPGGTKKTVVLREIPE 428 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~--~~~~---~~~-------------~~~~~~~~~~~~~~~~~~~~~~i~dt~g~ 428 (514)
....+|+|+|.+|+|||||+++|+.. .+.. +.. +..+.......+.. +...+.+|||+|.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~--~~~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW--EGHRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE--TTEEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE--CCeeEEEEECcCC
Confidence 34679999999999999999999842 2110 000 01111111122222 3456778999998
Q ss_pred hHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 429 EAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
..|.... ...++.+|++|+|+|+++..+++....|.. +... ++|+++|+||+|+...
T Consensus 86 ~df~~~~--~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~------~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEV--ERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY------GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHH--HHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT------TCCEEEEEECTTSTTC
T ss_pred cchHHHH--HHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc------CCCEEEEEECCCcccc
Confidence 7766554 567889999999999999877766665543 3332 6999999999999764
No 393
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.10 E-value=4.4e-10 Score=119.83 Aligned_cols=118 Identities=14% Similarity=-0.025 Sum_probs=79.2
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCC--CCCC---C-------------CCCCCccEEEEEEECC-----CCcEEEEEEe
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRP--FSDN---Y-------------TPTTDERYAVNVVDQP-----GGTKKTVVLR 424 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~--~~~~---~-------------~~~~~~~~~~~~~~~~-----~~~~~~~i~d 424 (514)
...+|+|+|..|+|||||+++|+... +... . ....+.......+.+. +....+.+||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 45789999999999999999997431 1100 0 0011111111222222 1225677999
Q ss_pred cCChhHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 425 EIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 425 t~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
|+|+..|.... ...++.+|++|+|+|+++..+.+....|.. +... ++|+++|+||+|+...
T Consensus 89 TPG~~df~~~~--~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~~------~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 89 TPGHVDFTIEV--ERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANKY------KVPRIAFVNKMDRMGA 149 (704)
T ss_pred CCCccchHHHH--HHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHHc------CCCEEEEEeCCCcccc
Confidence 99998887655 578899999999999998866555554533 2222 6999999999998764
No 394
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.10 E-value=3.4e-10 Score=112.56 Aligned_cols=138 Identities=19% Similarity=0.133 Sum_probs=88.4
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHH----Hhhh-cCccccccCc
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAV----AKLL-SNKDSLAACD 445 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~----~~~~-~~~~~~~~~d 445 (514)
.|+++|++|||||||++++++........+..+.......+..+ +...+.++|++|.... ..+. .....+..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~-~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS-EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS-SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEec-CcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 48999999999999999999886533333333444445556665 3456678999995221 1010 0012346799
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcCCcc
Q 010254 446 IAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLVMVL 512 (514)
Q Consensus 446 ~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 512 (514)
.++.|+|++ ..++..+..|..++....... ...|.++|+||+|+... .......+.+++.++++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL-~~~P~ILVlNKlDl~~~-~~~~~l~~~l~~~g~~v 301 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLLEE-EAVKALADALAREGLAV 301 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTSCH-HHHHHHHHHHHTTTSCE
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHh-hcCCEEEEEECCChhhH-HHHHHHHHHHHhcCCeE
Confidence 999999998 556777777766655432100 15899999999999864 33344444444445443
No 395
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.09 E-value=2.5e-10 Score=121.23 Aligned_cols=131 Identities=12% Similarity=0.052 Sum_probs=86.3
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCC----------------CCCccEEEEEEECCCCcEEEEEEecCChhHH
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTP----------------TTDERYAVNVVDQPGGTKKTVVLREIPEEAV 431 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~ 431 (514)
...+|+|+|++|+|||||+++|++......... ..+..+......+..+.....+|||+|++.|
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 356899999999999999999984332211100 0111122222222224567779999999888
Q ss_pred HhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcC
Q 010254 432 AKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV 509 (514)
Q Consensus 432 ~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 509 (514)
.... ...++.+|++++|+|+++.-..+.. .++..+... ++|+++|+||+|+. .......+++++.++
T Consensus 88 ~~~~--~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~------~ip~ilv~NKiD~~--~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 88 VGEI--RGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL------GLPRMVVVTKLDKG--GDYYALLEDLRSTLG 154 (665)
T ss_dssp HHHH--HHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT------TCCEEEEEECGGGC--CCHHHHHHHHHHHHC
T ss_pred HHHH--HHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc------cCCEEEEecCCchh--hhHHHHHHHHHHHhC
Confidence 7655 5788999999999999876443322 344444333 69999999999987 334455666766655
No 396
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.07 E-value=9.3e-12 Score=122.78 Aligned_cols=139 Identities=17% Similarity=0.107 Sum_probs=85.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC-----CCCCCCCCCCCCccccc-ceeCCeeEEEEEeCCCCccchhh-------HHH
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAAD-----TFPANVPPVLPPTRLPE-DFYPDRVPITIIDTPSSVEDRGK-------LGE 82 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~-----~~~~~~~~~~~~tt~~~-~~~~~~~~~~l~Dt~G~~~~~~~-------~~~ 82 (514)
+.+|+++|.+|||||||+|+|++. . ...++..++||... .+.. +..+.++||||+...... ...
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~--~~~~~~~~gtT~~~~~~~~-~~~~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGN--VITTSYFPGTTLDMIEIPL-ESGATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTC--CCEEEECTTSSCEEEEEEC-STTCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCcc--ceeecCCCCeEEeeEEEEe-CCCeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 468999999999999999999986 2 23344456666433 2222 224899999998643311 112
Q ss_pred hh---hccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEE
Q 010254 83 EL---RRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIE 159 (514)
Q Consensus 83 ~~---~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (514)
.+ ++.|.++++++.........+. .+..+.. .+.|+++++||+|.... ...+...+.+.+.++. .+.+
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~--~l~~l~~--~~~~~~~v~~k~d~~~~---~~~~~~~~~~~~~~g~--~l~p 309 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLA--RLDYIKG--GRRSFVCYMANELTVHR---TKLEKADSLYANQLGE--LLSP 309 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE--EEEEEES--SSEEEEEEECTTSCEEE---EEGGGHHHHHHHHBTT--TBCS
T ss_pred HHhcccccCceEEEEcCCceEEECCEE--EEEEccC--CCceEEEEecCCccccc---ccHHHHHHHHHHhcCC--ccCC
Confidence 23 7889999999974331111111 1222222 26899999999998765 2223334445555554 4555
Q ss_pred cCccccc
Q 010254 160 CSALKQI 166 (514)
Q Consensus 160 ~Sa~~~~ 166 (514)
.++....
T Consensus 310 ~~~~~~~ 316 (369)
T 3ec1_A 310 PSKRYAA 316 (369)
T ss_dssp SCGGGTT
T ss_pred CCchhhh
Confidence 5655544
No 397
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.05 E-value=5e-10 Score=110.07 Aligned_cols=27 Identities=44% Similarity=0.651 Sum_probs=25.0
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCC
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFS 395 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~ 395 (514)
..+|+|+|++|||||||+|+|++.++.
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 468999999999999999999999875
No 398
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.05 E-value=1.2e-09 Score=107.47 Aligned_cols=84 Identities=13% Similarity=0.182 Sum_probs=59.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccc---eeCC-----------------eeEEEEEeCCC
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPED---FYPD-----------------RVPITIIDTPS 72 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~---~~~~-----------------~~~~~l~Dt~G 72 (514)
..++.+|+|+|+||||||||+|+|++... +.+...|.+|+... +... +..+.+|||||
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~--a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVL--GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTT--TSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCc--ccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence 35678999999999999999999999773 23344455443221 1111 13589999999
Q ss_pred Cccc-------hhhHHHhhhccCEEEEEEeCCC
Q 010254 73 SVED-------RGKLGEELRRADAVVLTYACDR 98 (514)
Q Consensus 73 ~~~~-------~~~~~~~~~~ad~ii~v~d~~~ 98 (514)
+... .......++.+|++++|+|+.+
T Consensus 95 l~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7542 2234566889999999999864
No 399
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.03 E-value=1.8e-10 Score=110.31 Aligned_cols=139 Identities=14% Similarity=0.125 Sum_probs=71.6
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCC-CCCCCCCC------CCCccEE--EEEEECCCCcEEEEEEecCCh-------hH
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGR-PFSDNYTP------TTDERYA--VNVVDQPGGTKKTVVLREIPE-------EA 430 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~-~~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~i~dt~g~-------~~ 430 (514)
...++|+++|++|||||||+++|.+. .+...+.+ +.+.... ...+...+......+|||+|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34589999999999999999999886 44332200 1111111 112222323345669999997 33
Q ss_pred HHhhhc------------------CccccccCcEEEEEEeCCChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCC
Q 010254 431 VAKLLS------------------NKDSLAACDIAVFVHDSSDESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDL 491 (514)
Q Consensus 431 ~~~~~~------------------~~~~~~~~d~vilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 491 (514)
+..+.. .+-....+++++++.+.+. .+++.+. .++..+ . .+.|+++|+||+|+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l---~----~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI---H----NKVNIVPVIAKADT 167 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH---T----TTSCEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH---H----hcCCEEEEEEeCCC
Confidence 222210 0111123455555555432 1243333 222222 2 15899999999999
Q ss_pred cccc---cchhhHHHHHHHcCCccc
Q 010254 492 DSFA---MAIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 492 ~~~~---~~~~~~~~~~~~~~~~~~ 513 (514)
...+ ...+++.+++++++++||
T Consensus 168 ~~~~e~~~~~~~~~~~~~~~~~~~~ 192 (301)
T 2qnr_A 168 LTLKERERLKKRILDEIEEHNIKIY 192 (301)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 7643 235678889999998876
No 400
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.01 E-value=4.8e-12 Score=124.71 Aligned_cols=140 Identities=14% Similarity=0.082 Sum_probs=81.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC----CCCCCCCCCccccc-ceeCCeeEEEEEeCCCCccchhh--------HHH
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFP----ANVPPVLPPTRLPE-DFYPDRVPITIIDTPSSVEDRGK--------LGE 82 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~----~~~~~~~~~tt~~~-~~~~~~~~~~l~Dt~G~~~~~~~--------~~~ 82 (514)
+.+|+++|.+|||||||+|+|++.... ....+..++||... .+... ..+.++||||+...... ...
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~ 238 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-EESSLYDTPGIINHHQMAHYVGKQSLKL 238 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-SSCEEEECCCBCCTTSGGGGSCHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-CCeEEEeCCCcCcHHHHHHHhhHHHHHH
Confidence 468999999999999999999986421 12234566666433 22222 23899999998644311 111
Q ss_pred h--hhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhccCcEEEc
Q 010254 83 E--LRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREIETCIEC 160 (514)
Q Consensus 83 ~--~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 160 (514)
. .++.+.++++++.........+. .+..+.. .+.|+++++||+|.... ...+...+.+.+.++. .+.+.
T Consensus 239 ~~~~~~i~~~~~~l~~~~~~~~g~l~--~~d~l~~--~~~~~~~v~nk~d~~~~---~~~~~~~~~~~~~~g~--~l~p~ 309 (368)
T 3h2y_A 239 ITPTKEIKPMVFQLNEEQTLFFSGLA--RFDYVSG--GRRAFTCHFSNRLTIHR---TKLEKADELYKNHAGD--LLSPP 309 (368)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTE--EEEEEES--SSEEEEEEECTTSCEEE---EEHHHHHHHHHHHBTT--TBCSS
T ss_pred hccccccCceEEEEcCCCEEEEcceE--EEEEecC--CCceEEEEecCcccccc---ccHHHHHHHHHHHhCC--ccCCC
Confidence 1 36788999999864321111211 1222222 26899999999998765 2233344445555553 44555
Q ss_pred Ccccc
Q 010254 161 SALKQ 165 (514)
Q Consensus 161 Sa~~~ 165 (514)
++...
T Consensus 310 ~~~~~ 314 (368)
T 3h2y_A 310 TPEEL 314 (368)
T ss_dssp CHHHH
T ss_pred chhhH
Confidence 55443
No 401
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.01 E-value=4.4e-08 Score=97.08 Aligned_cols=162 Identities=14% Similarity=0.036 Sum_probs=94.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCcc-cccceeCC-eeEEEEEeCCCCccchhhHHHh-----hhc
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPAN--VPPVLPPTR-LPEDFYPD-RVPITIIDTPSSVEDRGKLGEE-----LRR 86 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~--~~~~~~~tt-~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~-----~~~ 86 (514)
+..|+|+|++|||||||+|.|+|...... +......++ ....+... ...++++|++|..........+ +..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 45899999999999999999999532111 111111111 11112221 2258999999975432223332 345
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcc--cc-------cchhHhhhhHHHHH----HHh-
Q 010254 87 ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD--EN-------QQVSLEQVMMPIMQ----QFR- 152 (514)
Q Consensus 87 ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~--~~-------~~~~~~~~~~~~~~----~~~- 152 (514)
.+.+++ +|... ..-+.+ .+...+... ++|+++|.||.|+.- +. ......+.+..+.. +.+
T Consensus 149 ~~~~~~-lS~G~-~~kqrv--~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~ 222 (413)
T 1tq4_A 149 YDFFII-ISATR-FKKNDI--DIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI 222 (413)
T ss_dssp CSEEEE-EESSC-CCHHHH--HHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCeEE-eCCCC-ccHHHH--HHHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 566665 77542 122233 266666665 789999999999641 10 11111222222321 111
Q ss_pred ccCcEEEcCc--cccccceecCCCCChhhHHHHHHHHHHHhcCcc
Q 010254 153 EIETCIECSA--LKQIQVKCFNSPLQPSEIVGVKRVVQEKLREGV 195 (514)
Q Consensus 153 ~~~~~i~~Sa--~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~~~ 195 (514)
....++.+|+ ..+. |+++|.+.|.+.+|++.
T Consensus 223 ~~~~iiliSsh~l~~~------------~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 223 AEPPIFLLSNKNVCHY------------DFPVLMDKLISDLPIYK 255 (413)
T ss_dssp SSCCEEECCTTCTTST------------THHHHHHHHHHHSCGGG
T ss_pred CCCcEEEEecCcCCcc------------CHHHHHHHHHHhCccch
Confidence 1236799999 5555 79999999999998765
No 402
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.00 E-value=1.3e-10 Score=111.50 Aligned_cols=115 Identities=17% Similarity=0.110 Sum_probs=88.5
Q ss_pred HHHHHhhCCCCC-CCCCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCCChh-hHHH
Q 010254 384 VLLNSFLGRPFS-DNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDES-SWKR 461 (514)
Q Consensus 384 sLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~-s~~~ 461 (514)
+|+++++.+.|. ..+.||.+..+. ..+..+ + ...+||+ +++|.++. +.+++++|++|+|||++++. ++..
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~-~--~~~iwD~--qer~~~l~--~~~~~~ad~vilV~D~~~~~~s~~~ 103 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDET-G--SGVIENV--LHRKNLLT--KPHVANVDQVILVVTVKMPETSTYI 103 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCS-S--SEEEEEE--CCCSCEET--TTTEESCCEEEEEECSSTTCCCHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCC-C--eEEEEEE--ccccceee--ccccccCCEEEEEEeCCCCCCCHHH
Confidence 689999999998 788888885444 222222 2 5678999 78888776 67899999999999999986 7999
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccchhhHHHHHHHcC--Cccc
Q 010254 462 ATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMAIQDSTRVFTFLV--MVLY 513 (514)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~ 513 (514)
+..|+..+... ++|+++|+||+||...+. .++..++++.++ ++|+
T Consensus 104 l~~~l~~~~~~------~~piilv~NK~DL~~~~~-v~~~~~~~~~~~~~~~~~ 150 (301)
T 1u0l_A 104 IDKFLVLAEKN------ELETVMVINKMDLYDEDD-LRKVRELEEIYSGLYPIV 150 (301)
T ss_dssp HHHHHHHHHHT------TCEEEEEECCGGGCCHHH-HHHHHHHHHHHTTTSCEE
T ss_pred HHHHHHHHHHC------CCCEEEEEeHHHcCCchh-HHHHHHHHHHHhhhCcEE
Confidence 99999877652 699999999999976432 245677777766 5543
No 403
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.99 E-value=1.2e-10 Score=110.82 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=53.2
Q ss_pred HHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhc-cCcEE
Q 010254 80 LGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFRE-IETCI 158 (514)
Q Consensus 80 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~i 158 (514)
.+..+.++|.+++|+|+.++..-.+....++...... ++|++||+||+||.+.. ...+....+.+.|.. -.+++
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~---~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQ---DTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCH---HHHHHHHHHHHHHHHHTCCEE
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchh---hhHHHHHHHHHHHHhCCCeEE
Confidence 3457899999999999997665433322244444444 89999999999998761 100112333333321 12889
Q ss_pred EcCccccc
Q 010254 159 ECSALKQI 166 (514)
Q Consensus 159 ~~Sa~~~~ 166 (514)
.+||.++.
T Consensus 155 ~~sa~~~~ 162 (307)
T 1t9h_A 155 LTSSKDQD 162 (307)
T ss_dssp ECCHHHHT
T ss_pred EEecCCCC
Confidence 99999887
No 404
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.99 E-value=7.8e-10 Score=108.24 Aligned_cols=86 Identities=15% Similarity=0.020 Sum_probs=54.8
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCC-------------------CcEEEEEEecCChhH
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPG-------------------GTKKTVVLREIPEEA 430 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~dt~g~~~ 430 (514)
++|+++|.||||||||+|+|++........+..|....+..+.+++ ......+|||+|...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999998753222223223222233333331 123567899999654
Q ss_pred HHh----hh-cCccccccCcEEEEEEeCCC
Q 010254 431 VAK----LL-SNKDSLAACDIAVFVHDSSD 455 (514)
Q Consensus 431 ~~~----~~-~~~~~~~~~d~vilv~D~~~ 455 (514)
..+ +. .....++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 311 10 01235789999999999986
No 405
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.94 E-value=6.1e-09 Score=101.01 Aligned_cols=76 Identities=25% Similarity=0.300 Sum_probs=48.5
Q ss_pred hhhccCEEEEEEeCCCccc-HHHHHHHHHHHHHhcCCCCcEEEEEecccCcccccchhHhhhhHHHHHHHhcc-CcEEEc
Q 010254 83 ELRRADAVVLTYACDRPET-LDELSTFWLPELRRLEVKVPVIVVGCKLDLRDENQQVSLEQVMMPIMQQFREI-ETCIEC 160 (514)
Q Consensus 83 ~~~~ad~ii~v~d~~~~~s-~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~ 160 (514)
.+.++|.+++|.+.. |.. ...++. ++...... ++|++||+||+||.+.. . .+....+...|... .+++.+
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r-~L~~a~~~--~~~~iivlNK~DL~~~~---~-~~~~~~~~~~y~~~G~~v~~~ 198 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDR-YLVGCETL--QVEPLIVLNKIDLLDDE---G-MDFVNEQMDIYRNIGYRVLMV 198 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHH-HHHHHHHH--TCEEEEEEECGGGCCHH---H-HHHHHHHHHHHHTTTCCEEEC
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHH-HHHHHHhc--CCCEEEEEECccCCCch---h-HHHHHHHHHHHHhCCCcEEEE
Confidence 368999999886654 543 333333 44444444 78999999999998751 1 11123344444322 279999
Q ss_pred Cccccc
Q 010254 161 SALKQI 166 (514)
Q Consensus 161 Sa~~~~ 166 (514)
||.++.
T Consensus 199 Sa~~~~ 204 (358)
T 2rcn_A 199 SSHTQD 204 (358)
T ss_dssp BTTTTB
T ss_pred ecCCCc
Confidence 999998
No 406
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.91 E-value=2.8e-09 Score=103.87 Aligned_cols=99 Identities=10% Similarity=0.030 Sum_probs=76.0
Q ss_pred CCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCCC----------hhhHHHHHHHHHHH
Q 010254 400 PTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSD----------ESSWKRATELLVEV 469 (514)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~----------~~s~~~~~~~~~~~ 469 (514)
+|.| .....+.+. ...+.+|||+|++.+++.+ ..++++++++|+|||+++ ..++++...|+..+
T Consensus 179 ~T~G--i~~~~~~~~--~~~l~iwDt~GQe~~r~~w--~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i 252 (353)
T 1cip_A 179 KTTG--IVETHFTFK--DLHFKMFDVGGQRSERKKW--IHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI 252 (353)
T ss_dssp CCCS--EEEEEEEET--TEEEEEEEECCSGGGGGGG--GGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHH
T ss_pred ceec--eEEEEEeeC--CeeEEEEeCCCchhhhHHH--HHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHH
Confidence 4444 333444443 5677899999999999988 689999999999999999 56799999999888
Q ss_pred HhcCCCCCCCCcEEEEEeCCCCcccc----------------cchhhHHHHHH
Q 010254 470 ASYGEDTGFEVPCLIVAAKDDLDSFA----------------MAIQDSTRVFT 506 (514)
Q Consensus 470 ~~~~~~~~~~~p~ilv~nK~Dl~~~~----------------~~~~~~~~~~~ 506 (514)
...... .++|++|++||+|+..++ +..+++.+|++
T Consensus 253 ~~~~~~--~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~ 303 (353)
T 1cip_A 253 CNNKWF--TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ 303 (353)
T ss_dssp HTCGGG--TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHH
T ss_pred HcCccc--cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHH
Confidence 764221 279999999999996543 34667777776
No 407
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.89 E-value=4.8e-09 Score=103.84 Aligned_cols=113 Identities=21% Similarity=0.264 Sum_probs=64.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCcc---cccceeCC--eeEEEEEeCCCCccch-------------
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPAN-VPPVLPPTR---LPEDFYPD--RVPITIIDTPSSVEDR------------- 77 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~-~~~~~~~tt---~~~~~~~~--~~~~~l~Dt~G~~~~~------------- 77 (514)
++++|+|++|+|||||+|.|+|..+... .....++.+ +...+... ...++++|++|+....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 4599999999999999999999764221 221122222 11222222 2378999999986431
Q ss_pred -hhHHHhhh-------------cc--C-EEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc
Q 010254 78 -GKLGEELR-------------RA--D-AVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 78 -~~~~~~~~-------------~a--d-~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 134 (514)
.....++. .+ | +++|+.|...+.+..++ .++..+. .+.|+|+|.||+|....
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccch
Confidence 11111211 12 2 36667775544444433 3666665 38999999999998765
No 408
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.88 E-value=4.7e-09 Score=106.67 Aligned_cols=114 Identities=20% Similarity=0.204 Sum_probs=67.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHh------cCCCCCCCC-CC----------------CC----Ccc-ccc--------c
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAA------ADTFPANVP-PV----------------LP----PTR-LPE--------D 57 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~------~~~~~~~~~-~~----------------~~----~tt-~~~--------~ 57 (514)
.....|+|+|.+||||||++++|. +.+....-. .. .+ .++ .+. .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346789999999999999999999 544210000 00 00 000 000 0
Q ss_pred eeCCeeEEEEEeCCCCccchh-hHH---Hh--hhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcE-EEEEeccc
Q 010254 58 FYPDRVPITIIDTPSSVEDRG-KLG---EE--LRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPV-IVVGCKLD 130 (514)
Q Consensus 58 ~~~~~~~~~l~Dt~G~~~~~~-~~~---~~--~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pv-ilv~NK~D 130 (514)
+...++.+.|+||||...... ... .. +..+|.+++|+|+..... ... ....+.. ..|+ ++|+||+|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~--~a~~~~~---~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEA--QAKAFKD---KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHH--HHHHHHH---HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHH--HHHHHHh---hcCceEEEEeCCc
Confidence 111567899999999864322 111 11 237999999999887543 221 3333433 2575 89999999
Q ss_pred Cccc
Q 010254 131 LRDE 134 (514)
Q Consensus 131 l~~~ 134 (514)
....
T Consensus 252 ~~~~ 255 (504)
T 2j37_W 252 GHAK 255 (504)
T ss_dssp SCCC
T ss_pred cccc
Confidence 8754
No 409
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.85 E-value=1.2e-08 Score=100.65 Aligned_cols=81 Identities=11% Similarity=0.043 Sum_probs=67.5
Q ss_pred EEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhcCCCCCC
Q 010254 409 NVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSD----------ESSWKRATELLVEVASYGEDTGF 478 (514)
Q Consensus 409 ~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~----------~~s~~~~~~~~~~~~~~~~~~~~ 478 (514)
..+.+. ...+.+|||+|++.+++++ ..++++++++|+|||+++ ..+|++...|+..+...... +
T Consensus 210 ~~~~~~--~v~l~iwDtaGQe~~r~~w--~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~--~ 283 (402)
T 1azs_C 210 TKFQVD--KVNFHMFDVGGQRDERRKW--IQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL--R 283 (402)
T ss_dssp EEEEET--TEEEEEEEECCSGGGGGGG--GGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC--S
T ss_pred EEeecC--Cccceecccchhhhhhhhh--HhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC--C
Confidence 444444 3677899999999999988 689999999999999999 89999999999998765321 2
Q ss_pred CCcEEEEEeCCCCcccc
Q 010254 479 EVPCLIVAAKDDLDSFA 495 (514)
Q Consensus 479 ~~p~ilv~nK~Dl~~~~ 495 (514)
++|++||+||+|+..++
T Consensus 284 ~~piiLvgNK~DL~~~k 300 (402)
T 1azs_C 284 TISVILFLNKQDLLAEK 300 (402)
T ss_dssp SCCEEEEEECHHHHHHH
T ss_pred CCeEEEEEEChhhhhhh
Confidence 79999999999986544
No 410
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.83 E-value=7.5e-09 Score=100.82 Aligned_cols=75 Identities=9% Similarity=-0.036 Sum_probs=62.4
Q ss_pred cEEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 010254 417 TKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSS----------DESSWKRATELLVEVASYGEDTGFEVPCLIVA 486 (514)
Q Consensus 417 ~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 486 (514)
...+.+|||+|++.+++++ ..++++++++|+|||++ +..+|++...|+..+...... +++|++||+
T Consensus 182 ~v~l~iwDtaGQe~~r~~~--~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~--~~~piiLvg 257 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKW--IHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF--EKTSFMLFL 257 (354)
T ss_dssp --EEEEEEECCSTTGGGGT--GGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG--SSCEEEEEE
T ss_pred ceeeEEEECCCchhhhHHH--HHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc--CCCeEEEEE
Confidence 4567799999999999988 78999999999999998 778999999999888764221 279999999
Q ss_pred eCCCCcccc
Q 010254 487 AKDDLDSFA 495 (514)
Q Consensus 487 nK~Dl~~~~ 495 (514)
||+|+..++
T Consensus 258 NK~DL~~~k 266 (354)
T 2xtz_A 258 NKFDIFEKK 266 (354)
T ss_dssp ECHHHHHHH
T ss_pred ECcchhhhh
Confidence 999986543
No 411
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.83 E-value=1.3e-08 Score=99.50 Aligned_cols=101 Identities=11% Similarity=0.055 Sum_probs=69.4
Q ss_pred HHHhhCCCCCCC-------CCCCCCccEEEEEEECCCCcEEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCCC---
Q 010254 386 LNSFLGRPFSDN-------YTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSD--- 455 (514)
Q Consensus 386 i~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~--- 455 (514)
+.|+...++.++ ..+|.|. ....+.+. ...+.+|||+|++.+++.+ ..++++++++|+|||+++
T Consensus 166 ~~ri~~~~Y~PT~~Dil~~r~~T~Gi--~~~~~~~~--~~~l~i~Dt~Gq~~~r~~w--~~~f~~~~~iIfv~dls~~dq 239 (362)
T 1zcb_A 166 LDKLGVPDYIPSQQDILLARRPTKGI--HEYDFEIK--NVPFKMVDVGGQRSERKRW--FECFDSVTSILFLVSSSEFDQ 239 (362)
T ss_dssp HHHHTSTTCCCCHHHHHHCCCCCSSE--EEEEEEET--TEEEEEEEECC-------C--TTSCTTCCEEEEEEETTCTTC
T ss_pred HHHHhcCCCCCChhhhhhccCCccce--EEEEeeeC--CeEEEEEeccchhhhhhhH--HHHhCCCCEEEEEEECccccc
Confidence 556666655543 2244453 33444443 4678899999999999888 688999999999999999
Q ss_pred -------hhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 456 -------ESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 456 -------~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
..++++...|+..+...... .++|+||++||+|+..+
T Consensus 240 ~l~ed~~~n~~~es~~~~~~i~~~~~~--~~~piILv~NK~DL~~~ 283 (362)
T 1zcb_A 240 VLMEDRQTNRLTESLNIFETIVNNRVF--SNVSIILFLNKTDLLEE 283 (362)
T ss_dssp EETTEEEEEHHHHHHHHHHHHHTCGGG--TTSEEEEEEECHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHhcchhh--CCCCEEEEEEChhhhhh
Confidence 77899999999888764211 27999999999999753
No 412
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.82 E-value=2.5e-09 Score=104.96 Aligned_cols=92 Identities=15% Similarity=0.082 Sum_probs=50.9
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEEEECCCC---------------cEEEEEEecCChhHHH
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNVVDQPGG---------------TKKTVVLREIPEEAVA 432 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~dt~g~~~~~ 432 (514)
..++|.++|.||||||||+|+|++..+.....|.+|.......+.+++. .....+|||+|.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 3478999999999999999999998774444455555555556666521 1236789999976644
Q ss_pred hh----h-cCccccccCcEEEEEEeCCChhhH
Q 010254 433 KL----L-SNKDSLAACDIAVFVHDSSDESSW 459 (514)
Q Consensus 433 ~~----~-~~~~~~~~~d~vilv~D~~~~~s~ 459 (514)
+. . ....+++.+|++++|+|+++.+++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC------
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 31 0 113567899999999999865443
No 413
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.73 E-value=8.4e-08 Score=90.04 Aligned_cols=115 Identities=22% Similarity=0.277 Sum_probs=67.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CC-CCCCcc----cccceeCC--eeEEEEEeCCCCccchh------
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADTFPANV----PP-VLPPTR----LPEDFYPD--RVPITIIDTPSSVEDRG------ 78 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~~~~~~----~~-~~~~tt----~~~~~~~~--~~~~~l~Dt~G~~~~~~------ 78 (514)
.++++|+|++|+|||||+|.|+|......- .. ..+.+. +...+... ...++++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 478999999999999999999985422210 00 011111 11111111 23689999999743210
Q ss_pred hHH--------H--------------hhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc
Q 010254 79 KLG--------E--------------ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 79 ~~~--------~--------------~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 134 (514)
.+. . .+..++++++++|... ..+...+..++..+.. ..++|+|+||+|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~~~l~~L~~---~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDLEFMKHLSK---VVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHHHHHHHHHT---TSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHHHHHHHHHh---cCcEEEEEeccccCCH
Confidence 110 0 1345799999998542 2233333336677765 4899999999998765
No 414
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.72 E-value=7.1e-09 Score=98.05 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=38.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCcc
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVE 75 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~ 75 (514)
...++|+++|.||||||||+|+|++.. ...++..+++|.......-+..+.++||||+..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~--~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKN--IAKTGDRPGITTSQQWVKVGKELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSC--CC------------CCEEETTTEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCc--eeecCCCCCeeeeeEEEEeCCCEEEEECcCcCC
Confidence 457899999999999999999999987 344555666664432221134689999999864
No 415
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.72 E-value=4.5e-09 Score=96.07 Aligned_cols=125 Identities=10% Similarity=0.087 Sum_probs=70.2
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCC------CCCCCCc--------cEEEEEEECC----------------CCc
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDN------YTPTTDE--------RYAVNVVDQP----------------GGT 417 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~------~~~~~~~--------~~~~~~~~~~----------------~~~ 417 (514)
...+|+++|.+|||||||+++|++...... ..+..+. ......+..+ ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 357899999999999999999986522110 0111000 1111222221 012
Q ss_pred EEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccc-c
Q 010254 418 KKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFA-M 496 (514)
Q Consensus 418 ~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~ 496 (514)
..++++||+|.-.... ......+.+++|+|+++... ....+... . +.|+++|+||+|+.... .
T Consensus 109 ~d~iiidt~G~~~~~~-----~~~~~~~~~i~vvd~~~~~~--~~~~~~~~---~------~~~~iiv~NK~Dl~~~~~~ 172 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV-----DFDLGENYRVVMVSVTEGDD--VVEKHPEI---F------RVADLIVINKVALAEAVGA 172 (221)
T ss_dssp CSEEEEEEEEBSSGGG-----GCCCSCSEEEEEEEGGGCTT--HHHHCHHH---H------HTCSEEEEECGGGHHHHTC
T ss_pred CCEEEEeCCCCCCCCc-----hhccccCcEEEEEeCCCcch--hhhhhhhh---h------hcCCEEEEecccCCcchhh
Confidence 3567889998511110 11135788999999886532 11111111 1 47899999999987542 3
Q ss_pred chhhHHHHHHHc
Q 010254 497 AIQDSTRVFTFL 508 (514)
Q Consensus 497 ~~~~~~~~~~~~ 508 (514)
...+..++++++
T Consensus 173 ~~~~~~~~~~~~ 184 (221)
T 2wsm_A 173 DVEKMKADAKLI 184 (221)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 445555555554
No 416
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.72 E-value=3.8e-08 Score=104.19 Aligned_cols=118 Identities=20% Similarity=0.161 Sum_probs=72.2
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccE-----------------------------------------
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERY----------------------------------------- 406 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~----------------------------------------- 406 (514)
...+|+|+|.+++|||||+|+|++..+-+......|...
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 346899999999999999999999887433322111110
Q ss_pred ----------EEEEEECCCCcEEEEEEecCChh-------------HHHhhhcCcccc-ccCcEEEEEEeCCChhhHHHH
Q 010254 407 ----------AVNVVDQPGGTKKTVVLREIPEE-------------AVAKLLSNKDSL-AACDIAVFVHDSSDESSWKRA 462 (514)
Q Consensus 407 ----------~~~~~~~~~~~~~~~i~dt~g~~-------------~~~~~~~~~~~~-~~~d~vilv~D~~~~~s~~~~ 462 (514)
....+..+ +.....++||+|.. ....+. ..++ ..+|++++|.|++....-++.
T Consensus 130 g~~~~is~~~i~l~I~~P-~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv--~~yi~~~aDlIL~VVDAs~~~~~~d~ 206 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDML--MQFVTKENCLILAVSPANSDLANSDA 206 (772)
T ss_dssp CSTTCCCSCCEEEEEEET-TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHH--HHHHTSTTEEEEEEEETTSCSSSCHH
T ss_pred CCCCcccccceEEEEecC-CCCceEEEECCCcccCCCCCCcHHHHHHHHHHH--HHHHhcCCcEEEEEEcCCCCcchhHH
Confidence 00111122 22235578999932 222232 1222 688999999999875322222
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 463 TELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
..++..+... +.|+++|.||+|+...
T Consensus 207 l~ll~~L~~~------g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 207 LKIAKEVDPQ------GQRTIGVITKLDLMDE 232 (772)
T ss_dssp HHHHHHHCTT------CSSEEEEEECTTSSCT
T ss_pred HHHHHHHHhc------CCCEEEEEeCcccCCc
Confidence 2333444322 6899999999999764
No 417
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.68 E-value=5.7e-09 Score=102.07 Aligned_cols=60 Identities=12% Similarity=0.123 Sum_probs=34.8
Q ss_pred EEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcc
Q 010254 418 KKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDS 493 (514)
Q Consensus 418 ~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 493 (514)
..+.++||+|..... ......+|++++|+|++.....+.+.. .+ . ..|.++|+||+|+..
T Consensus 167 ~~~iliDT~Gi~~~~-----~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i---l-----~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 167 YDIILIETVGVGQSE-----FAVADMVDMFVLLLPPAGGDELQGIKR---GI---I-----EMADLVAVTKSDGDL 226 (349)
T ss_dssp CSEEEEECCCC--CH-----HHHHTTCSEEEEEECCC------------------C-----CSCSEEEECCCSGGG
T ss_pred CCEEEEECCCcchhh-----hhHHhhCCEEEEEEcCCcchhHHHhHH---HH---H-----hcCCEEEEeeecCCC
Confidence 356788999953111 123468999999999987643221111 11 1 468899999999875
No 418
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.61 E-value=2.6e-08 Score=97.80 Aligned_cols=61 Identities=10% Similarity=0.086 Sum_probs=40.8
Q ss_pred EEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 418 KKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 418 ~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
..+.++||+|...-. ...+..+|++++|+|.+..+.++.+.. .. .+.|+++|+||+|+...
T Consensus 172 ~~~iiiDTpGi~~~~-----~~~~~~aD~vl~V~d~~~~~~~~~l~~-------~~----~~~p~ivVlNK~Dl~~~ 232 (355)
T 3p32_A 172 FDVILIETVGVGQSE-----VAVANMVDTFVLLTLARTGDQLQGIKK-------GV----LELADIVVVNKADGEHH 232 (355)
T ss_dssp CCEEEEEECSCSSHH-----HHHHTTCSEEEEEEESSTTCTTTTCCT-------TS----GGGCSEEEEECCCGGGH
T ss_pred CCEEEEeCCCCCcHH-----HHHHHhCCEEEEEECCCCCccHHHHHH-------hH----hhcCCEEEEECCCCcCh
Confidence 457789999943322 123488999999999876544322211 00 14799999999998754
No 419
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.57 E-value=1.7e-07 Score=96.82 Aligned_cols=115 Identities=17% Similarity=0.078 Sum_probs=75.7
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCC------------------CCCCC----CCCCCccEEEEEEECCCCcEEEEEEecC
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRP------------------FSDNY----TPTTDERYAVNVVDQPGGTKKTVVLREI 426 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~------------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~dt~ 426 (514)
..+|+|+|...+|||||..+|+... ..+.. ...++..-....+.+ +...+.++||+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~--~~~~iNlIDTP 108 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY--RDRVVNLLDTP 108 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE--TTEEEEEECCC
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE--CCEEEEEEeCC
Confidence 3579999999999999999996111 11100 011122222223333 34566688999
Q ss_pred ChhHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 427 PEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 427 g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
|...|..-. .+.++-+|++|+|+|+.+.-.-+-...|... ..+ ++|.+++.||+|....
T Consensus 109 GHvDF~~Ev--~raL~~~DgAvlVvda~~GV~~qT~~v~~~a-~~~------~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFSEDT--YRVLTAVDSALVVIDAAKGVEAQTRKLMDVC-RMR------ATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCSHHH--HHHHHSCSEEEEEEETTTBSCHHHHHHHHHH-HHT------TCCEEEEEECTTSCCC
T ss_pred CcHHHHHHH--HHHHHhcCceEEEeecCCCcccccHHHHHHH-HHh------CCceEEEEecccchhc
Confidence 988886554 5788999999999999987444444445333 333 6999999999998764
No 420
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.53 E-value=2.7e-08 Score=92.99 Aligned_cols=58 Identities=21% Similarity=0.311 Sum_probs=37.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccc
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVED 76 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~ 76 (514)
++|+++|.||||||||+|+|.+.... .+...+++|.......-+..+.+|||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~--~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS--SVGAQPGITKGIQWFSLENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------------CCSCEEECTTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc--ccCCCCCCccceEEEEeCCCEEEEECCCcccC
Confidence 69999999999999999999998742 23345566644332222346899999998643
No 421
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.51 E-value=1.9e-07 Score=81.96 Aligned_cols=169 Identities=8% Similarity=0.036 Sum_probs=94.2
Q ss_pred CCCCCCCceeEEEEEcCC-CCCHHHHHHHHhcCCCCCC---CC-CCCCCcccccceeCCee-EEEEE-------------
Q 010254 8 NSGPGGKTGVRIVVCGEK-GTGKSSLIVTAAADTFPAN---VP-PVLPPTRLPEDFYPDRV-PITII------------- 68 (514)
Q Consensus 8 ~~~~~~~~~~~I~ivG~~-nvGKSsLin~l~~~~~~~~---~~-~~~~~tt~~~~~~~~~~-~~~l~------------- 68 (514)
-++-......|+|++|+. .-=+.+|+.+|+..+-.-. .+ +.+.+.--.+.+..++. +|.|+
T Consensus 8 ~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~ 87 (227)
T 3l82_B 8 LHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRA 87 (227)
T ss_dssp SSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC--------
T ss_pred HHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhh
Confidence 345556788999999983 2234489999998651110 01 11111111122222111 23322
Q ss_pred --------------------eCCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHH---HHHHHhc--CCCCcEE
Q 010254 69 --------------------DTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFW---LPELRRL--EVKVPVI 123 (514)
Q Consensus 69 --------------------Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~---~~~l~~~--~~~~pvi 123 (514)
|.+|+...+..++.|+.++|++|||+|.+++..++ ....+ ...+... ..+.|++
T Consensus 88 ~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLL 166 (227)
T 3l82_B 88 REEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLL 166 (227)
T ss_dssp -----------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEE
T ss_pred hhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEE
Confidence 23366677778899999999999999999876544 33223 2222221 1478999
Q ss_pred EEEecc-cCcccccchhHhhhhHHHHH-HHhccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhc
Q 010254 124 VVGCKL-DLRDENQQVSLEQVMMPIMQ-QFREIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLR 192 (514)
Q Consensus 124 lv~NK~-Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~ 192 (514)
|.+||. |+... .+..+..+.+.- .+.....+..|||++|+ |+.+-++++.+.+.
T Consensus 167 VlANKqqDlp~A---ms~~EI~e~L~L~~l~R~W~Iq~csA~TGe------------GL~EGLdWL~~~l~ 222 (227)
T 3l82_B 167 VLSCISQGDVKR---MPCFYLAHELHLNLLNHPWLVQDTEAETLT------------GFLNGIEWILEEVE 222 (227)
T ss_dssp EEEEESSTTSCB---CCHHHHHHHTTGGGGCSCEEEEEEETTTCT------------THHHHHHHHTTTTT
T ss_pred EEeCCCcCccCC---CCHHHHHHHcCCcCCCCCEEEEEeECCCCc------------CHHHHHHHHHHHHH
Confidence 999995 67654 222222111110 01111268999999999 99999999987664
No 422
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.50 E-value=2.1e-07 Score=96.17 Aligned_cols=62 Identities=16% Similarity=0.085 Sum_probs=43.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccce------eCCeeEEEEEeCCCCcc
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDF------YPDRVPITIIDTPSSVE 75 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~------~~~~~~~~l~Dt~G~~~ 75 (514)
...++|+|+|.||||||||+|+|+|......+.++..++|..... ...+..+.|+||||+..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 456899999999999999999999987422333322233322211 13467899999999864
No 423
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.46 E-value=1.7e-09 Score=99.25 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=24.6
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCC
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFS 395 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~ 395 (514)
..++|+++|.+|||||||+++|+...+.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 4689999999999999999999977544
No 424
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.44 E-value=1.2e-07 Score=92.34 Aligned_cols=61 Identities=18% Similarity=0.167 Sum_probs=37.6
Q ss_pred EEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 418 KKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 418 ~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
..+.++||+|....... ....+|++++|+|++....++.+.. .. . +.|.++|+||+|+...
T Consensus 149 ~~i~liDTpG~~~~~~~-----~~~~aD~vl~Vvd~~~~~~~~~l~~---~~--~------~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE-----VARMVDCFISLQIAGGGDDLQGIKK---GL--M------EVADLIVINKDDGDNH 209 (341)
T ss_dssp CSEEEEEEECCTTHHHH-----HHTTCSEEEEEECC------CCCCH---HH--H------HHCSEEEECCCCTTCH
T ss_pred CCEEEEeCCCccchHHH-----HHHhCCEEEEEEeCCccHHHHHHHH---hh--h------cccCEEEEECCCCCCh
Confidence 45778999996443322 3489999999999976533211111 11 1 4688999999999763
No 425
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.39 E-value=2.1e-07 Score=93.09 Aligned_cols=111 Identities=20% Similarity=0.211 Sum_probs=65.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC------CCCC-CCC-------------------C--CCCCcc-cccce------eC
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAAD------TFPA-NVP-------------------P--VLPPTR-LPEDF------YP 60 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~------~~~~-~~~-------------------~--~~~~tt-~~~~~------~~ 60 (514)
...|+|+|++||||||+++.|... +..- ... + ..++++ .+..+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 467999999999999999999862 1100 000 0 000011 11000 12
Q ss_pred CeeEEEEEeCCCCccchhhHHH------hhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCC-c-EEEEEecccCc
Q 010254 61 DRVPITIIDTPSSVEDRGKLGE------ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKV-P-VIVVGCKLDLR 132 (514)
Q Consensus 61 ~~~~~~l~Dt~G~~~~~~~~~~------~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~-p-vilv~NK~Dl~ 132 (514)
.++.+.|+||||.......... .+..+|.+++|+|+..+. +... ....+.. .. | ..+|+||+|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~-~~~~~~~---~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGI-QAKAFKE---AVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHH-HHHHHHT---TSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHH-HHHHHhh---cccCCeEEEEeCCCCc
Confidence 5678999999997654322211 123699999999986543 2211 2333332 45 6 89999999986
Q ss_pred c
Q 010254 133 D 133 (514)
Q Consensus 133 ~ 133 (514)
.
T Consensus 252 ~ 252 (432)
T 2v3c_C 252 A 252 (432)
T ss_dssp S
T ss_pred c
Confidence 4
No 426
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.32 E-value=2.5e-07 Score=86.68 Aligned_cols=70 Identities=11% Similarity=0.008 Sum_probs=41.4
Q ss_pred EEEEEecCChhHHHhhhc----CccccccCcEEEEEEeCCChh---hHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCC
Q 010254 419 KTVVLREIPEEAVAKLLS----NKDSLAACDIAVFVHDSSDES---SWKRATELLVEVASYGEDTGFEVPCLIVAAKDDL 491 (514)
Q Consensus 419 ~~~i~dt~g~~~~~~~~~----~~~~~~~~d~vilv~D~~~~~---s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 491 (514)
.++++||+|......... ....+.. +++++++|++... .+.....+........ +.|+++|+||+|+
T Consensus 110 d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~~iv~NK~D~ 183 (262)
T 1yrb_A 110 DYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL-----GATTIPALNKVDL 183 (262)
T ss_dssp SEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH-----TSCEEEEECCGGG
T ss_pred CEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc-----CCCeEEEEecccc
Confidence 578999999866543210 0023456 8999999876432 2222221121111111 5899999999998
Q ss_pred ccc
Q 010254 492 DSF 494 (514)
Q Consensus 492 ~~~ 494 (514)
...
T Consensus 184 ~~~ 186 (262)
T 1yrb_A 184 LSE 186 (262)
T ss_dssp CCH
T ss_pred ccc
Confidence 754
No 427
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.32 E-value=2.6e-06 Score=91.15 Aligned_cols=118 Identities=16% Similarity=0.016 Sum_probs=74.9
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCC--------C------CCCC----CCCCCccEEEEEEECCC-----CcEEEEEEe
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRP--------F------SDNY----TPTTDERYAVNVVDQPG-----GTKKTVVLR 424 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~--------~------~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~i~d 424 (514)
+..+|+|+|...+|||||..+|+... . .+.. ...++..-....+.+.+ +...+.++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 45689999999999999999997211 0 0000 00111111112222221 234566889
Q ss_pred cCChhHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 425 EIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 425 t~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
|+|+-.|..-. ...++-+|++|+|+|+.+.-.-+-..-|...... ++|.+++.||+|....
T Consensus 92 TPGHvDF~~Ev--~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~-------~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 92 TPGHVDFTIEV--ERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY-------GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCSCTTCHHHH--HHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH-------TCCEEEEEECSSSTTC
T ss_pred CCCCcccHHHH--HHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc-------CCCeEEEEccccccCc
Confidence 99987776554 5788999999999999987433333444444333 6999999999998653
No 428
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.31 E-value=1.7e-06 Score=81.08 Aligned_cols=136 Identities=19% Similarity=0.214 Sum_probs=69.8
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCC-------CCCCc-cEEEEEEECCCC-cEEEEEEecCCh-----------
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYT-------PTTDE-RYAVNVVDQPGG-TKKTVVLREIPE----------- 428 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~-~~~~~i~dt~g~----------- 428 (514)
.++++++|++|+|||||+|.|++...+.... .+.+. ...+..+.-..+ ....-++|++|-
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 3789999999999999999999765432210 01111 111111111101 113346677651
Q ss_pred -------hHHHhhh--------cCccccccCcEEEEEEeCC-ChhhHHHHH-HHHHHHHhcCCCCCCCCcEEEEEeCCCC
Q 010254 429 -------EAVAKLL--------SNKDSLAACDIAVFVHDSS-DESSWKRAT-ELLVEVASYGEDTGFEVPCLIVAAKDDL 491 (514)
Q Consensus 429 -------~~~~~~~--------~~~~~~~~~d~vilv~D~~-~~~s~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 491 (514)
..+.... ..+-.+..+++++++.|.. .+ +..++ ..+..+.. .+++++|.+|+|.
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~g--L~~lD~~~l~~L~~-------~~~vI~Vi~K~D~ 152 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHS--LRPLDLEFMKHLSK-------VVNIIPVIAKADT 152 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSS--CCHHHHHHHHHHHT-------TSEEEEEETTGGG
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCc--CCHHHHHHHHHHHh-------cCcEEEEEecccc
Confidence 0011000 0122345679999999965 33 22222 23333432 3899999999998
Q ss_pred ccccc---chhhHHHHHHHcCCccc
Q 010254 492 DSFAM---AIQDSTRVFTFLVMVLY 513 (514)
Q Consensus 492 ~~~~~---~~~~~~~~~~~~~~~~~ 513 (514)
..... ......+..+.+++.+|
T Consensus 153 lt~~e~~~~k~~i~~~l~~~~i~i~ 177 (270)
T 3sop_A 153 MTLEEKSEFKQRVRKELEVNGIEFY 177 (270)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred CCHHHHHHHHHHHHHHHHHcCcccc
Confidence 76432 12334444455666554
No 429
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.27 E-value=9.2e-06 Score=80.78 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=67.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc------CCCCCC-CCCCCC-------------Ccc--------ccc--------ce
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAA------DTFPAN-VPPVLP-------------PTR--------LPE--------DF 58 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~------~~~~~~-~~~~~~-------------~tt--------~~~--------~~ 58 (514)
.+..|+++|.+||||||++..|.. .+..-. ..+..+ +.. .+. ..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999973 221000 000000 000 000 00
Q ss_pred eCCeeEEEEEeCCCCccchhhH-H-----HhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCc
Q 010254 59 YPDRVPITIIDTPSSVEDRGKL-G-----EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLR 132 (514)
Q Consensus 59 ~~~~~~~~l~Dt~G~~~~~~~~-~-----~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~ 132 (514)
...++.+.|+||||........ . .....+|.+++|+|++..... .. ....+... -.+..+|+||+|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~-~a~~f~~~--~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YN-QALAFKEA--TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HH-HHHHHHHS--CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HH-HHHHHHhh--CCCeEEEEECCCCc
Confidence 1134789999999965433221 1 124468999999998764332 21 34444443 34567999999987
Q ss_pred cc
Q 010254 133 DE 134 (514)
Q Consensus 133 ~~ 134 (514)
..
T Consensus 253 ~~ 254 (443)
T 3dm5_A 253 AK 254 (443)
T ss_dssp SS
T ss_pred cc
Confidence 64
No 430
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.26 E-value=5.5e-06 Score=82.00 Aligned_cols=27 Identities=26% Similarity=0.527 Sum_probs=23.9
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCC
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPF 394 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~ 394 (514)
..++++|+|++|+|||||+|.|++..+
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccc
Confidence 346799999999999999999999864
No 431
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.26 E-value=1.8e-06 Score=79.65 Aligned_cols=109 Identities=6% Similarity=-0.008 Sum_probs=69.6
Q ss_pred CCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHH--HHHHHHHhc--CCCCcEEEEEec-ccCcccccchhHhhhh
Q 010254 70 TPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELST--FWLPELRRL--EVKVPVIVVGCK-LDLRDENQQVSLEQVM 144 (514)
Q Consensus 70 t~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~--~~~~~l~~~--~~~~pvilv~NK-~Dl~~~~~~~~~~~~~ 144 (514)
.+|++..+..++.|+.++|++|||+|.++++.++...+ .+...+... ..+.|++|.+|| .|+... .+..+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A---ms~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---MPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---CCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC---CCHHHHH
Confidence 45777778889999999999999999998876542221 121223211 237899999997 588654 2222211
Q ss_pred HHHHH-HHhccCcEEEcCccccccceecCCCCChhhHHHHHHHHHHHhcC
Q 010254 145 MPIMQ-QFREIETCIECSALKQIQVKCFNSPLQPSEIVGVKRVVQEKLRE 193 (514)
Q Consensus 145 ~~~~~-~~~~~~~~i~~Sa~~~~~~~~f~~~l~~~~i~~L~~~i~~~~~~ 193 (514)
+.+.- .+...-.+..|||.+|+ |+.+-++++.+.+..
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGe------------GL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLT------------GFLNGIEWILEEVES 308 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCT------------THHHHHHHHHHHSCC
T ss_pred HHcCCccCCCcEEEEecccCCCc------------CHHHHHHHHHHHHHh
Confidence 11110 01111268999999999 999999999887653
No 432
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.25 E-value=9.1e-07 Score=87.03 Aligned_cols=85 Identities=14% Similarity=0.087 Sum_probs=57.5
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCC-CCCCCCCCCccEEEEEEECCCC---------------cEEEEEEecCChhH--
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPF-SDNYTPTTDERYAVNVVDQPGG---------------TKKTVVLREIPEEA-- 430 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~dt~g~~~-- 430 (514)
..++.++|++|||||||+|+|++... .....|.++.......+.+++. .....++|++|...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 46899999999999999999999876 3333354454444455555521 12456889998321
Q ss_pred -----HHhhhcCccccccCcEEEEEEeCCC
Q 010254 431 -----VAKLLSNKDSLAACDIAVFVHDSSD 455 (514)
Q Consensus 431 -----~~~~~~~~~~~~~~d~vilv~D~~~ 455 (514)
+.... ...++.+|++++|+|+++
T Consensus 100 s~~e~L~~~f--l~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAF--LSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHH--HHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHH--HHHHHHHHHHHHHHhccc
Confidence 11011 235678999999999974
No 433
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.20 E-value=5e-07 Score=95.41 Aligned_cols=114 Identities=14% Similarity=0.108 Sum_probs=73.3
Q ss_pred EEEEEeCCCCCChHHHHHHhhCCC--CC---CCCCC-------------CCCccEEEEEEECCCCcEEEEEEecCChhHH
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGRP--FS---DNYTP-------------TTDERYAVNVVDQPGGTKKTVVLREIPEEAV 431 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~~--~~---~~~~~-------------~~~~~~~~~~~~~~~~~~~~~i~dt~g~~~~ 431 (514)
.+|+|+|...+|||||..+|+... .. .+... .++..-....+.+ +...+.++||+|+..|
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~--~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW--ENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC--SSCBCCCEECCCSSST
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE--CCEEEEEEECCCcHHH
Confidence 368999999999999999996111 10 00000 1111111112222 3344567899999888
Q ss_pred HhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccc
Q 010254 432 AKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSF 494 (514)
Q Consensus 432 ~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 494 (514)
..-. ...++-+|++|+|+|+.+.-.-+-..-|... ..+ ++|.+++.||+|....
T Consensus 81 ~~Ev--~raL~~~DgavlVVDa~~GV~~qT~~v~~~a-~~~------~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 81 LAEV--YRSLSVLDGAILLISAKDGVQAQTRILFHAL-RKM------GIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHH--HHHHTTCSEEECCEESSCTTCSHHHHHHHHH-HHH------TCSCEECCEECCSSSC
T ss_pred HHHH--HHHHHHhCEEEEEEeCCCCCcHHHHHHHHHH-HHc------CCCeEEEEeccccccC
Confidence 7655 5788999999999999987333333334333 333 6999999999998654
No 434
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.20 E-value=1.1e-06 Score=85.26 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCChHHHHHHhh
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFL 390 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~ 390 (514)
...+.++|++|+|||||++.+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999997
No 435
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.07 E-value=3.7e-06 Score=80.32 Aligned_cols=78 Identities=18% Similarity=0.120 Sum_probs=60.1
Q ss_pred hhHHHhhhcCccccccCcEEEEEEeCCChh-hHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCccccc-c-hhhHHHH
Q 010254 428 EEAVAKLLSNKDSLAACDIAVFVHDSSDES-SWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAM-A-IQDSTRV 504 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~~d~vilv~D~~~~~-s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~-~~~~~~~ 504 (514)
++++..+. +.+++++|++++|+|++++. ++..++.|+..+... ++|+++|+||+|+..++. . ..+..++
T Consensus 66 ~er~~~l~--r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~------~~~~ilV~NK~DL~~~~~v~~~~~~~~~ 137 (302)
T 2yv5_A 66 EERKNLLI--RPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF------KVEPVIVFNKIDLLNEEEKKELERWISI 137 (302)
T ss_dssp CCCSCEEE--TTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT------TCEEEEEECCGGGCCHHHHHHHHHHHHH
T ss_pred CChHHHHh--HHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC------CCCEEEEEEcccCCCccccHHHHHHHHH
Confidence 55565555 46889999999999999985 899999999877653 699999999999976431 2 4556667
Q ss_pred HHHcCCccc
Q 010254 505 FTFLVMVLY 513 (514)
Q Consensus 505 ~~~~~~~~~ 513 (514)
+++++++++
T Consensus 138 ~~~~g~~~~ 146 (302)
T 2yv5_A 138 YRDAGYDVL 146 (302)
T ss_dssp HHHTTCEEE
T ss_pred HHHCCCeEE
Confidence 777777654
No 436
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.05 E-value=2.8e-06 Score=86.34 Aligned_cols=114 Identities=11% Similarity=0.079 Sum_probs=62.9
Q ss_pred eEEEEEeCCCCCChHHHHHHhh------CCCCCCCCC----CCC-------Ccc--EEEEEEECC---------------
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFL------GRPFSDNYT----PTT-------DER--YAVNVVDQP--------------- 414 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~------~~~~~~~~~----~~~-------~~~--~~~~~~~~~--------------- 414 (514)
...|+++|.+||||||++++|. +.+...+.. +.. +.+ ..+......
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 4679999999999999999998 554322111 100 000 111110000
Q ss_pred CCcEEEEEEecCChhH----H-HhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcE-EEEEeC
Q 010254 415 GGTKKTVVLREIPEEA----V-AKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPC-LIVAAK 488 (514)
Q Consensus 415 ~~~~~~~i~dt~g~~~----~-~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK 488 (514)
.....++++||+|... + ..+..... ...+|.+++|+|++..... ......+.. .+|+ ++|.||
T Consensus 181 ~~~~DvvIIDTpG~~~~~~~l~~el~~~~~-~i~pd~vllVvDa~~g~~~---~~~a~~~~~-------~~~i~gvVlNK 249 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVAN-AIQPDNIVYVMDASIGQAC---EAQAKAFKD-------KVDVASVIVTK 249 (504)
T ss_dssp HTTCCEEEEEECCCCTTCHHHHHHHHHHHH-HHCCSEEEEEEETTCCTTH---HHHHHHHHH-------HHCCCCEEEEC
T ss_pred HCCCcEEEEeCCCCcccchhHHHHHHHHHh-hhcCceEEEEEeccccccH---HHHHHHHHh-------hcCceEEEEeC
Confidence 0234577889999532 1 11110011 2378999999999876321 112222322 2564 889999
Q ss_pred CCCcc
Q 010254 489 DDLDS 493 (514)
Q Consensus 489 ~Dl~~ 493 (514)
+|...
T Consensus 250 ~D~~~ 254 (504)
T 2j37_W 250 LDGHA 254 (504)
T ss_dssp TTSCC
T ss_pred Ccccc
Confidence 99875
No 437
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.97 E-value=4e-05 Score=76.19 Aligned_cols=138 Identities=15% Similarity=0.118 Sum_probs=77.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh------cCCCCC-CCCC----------------CCCCcc-----ccc--------ce
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAA------ADTFPA-NVPP----------------VLPPTR-----LPE--------DF 58 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~------~~~~~~-~~~~----------------~~~~tt-----~~~--------~~ 58 (514)
.+..|+++|++||||||++..|. +.+..- .... ..+... .+. ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46789999999999999999997 222100 0000 000000 000 01
Q ss_pred eCCeeEEEEEeCCCCcc--ch-hhHH---H--hhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEeccc
Q 010254 59 YPDRVPITIIDTPSSVE--DR-GKLG---E--ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLD 130 (514)
Q Consensus 59 ~~~~~~~~l~Dt~G~~~--~~-~~~~---~--~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~D 130 (514)
...++.+.|+||||... .. .... . .....|.+++|+|+...... .. ....+... -.+..+|+||+|
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~-~a~~f~~~--~~~~gVIlTKlD 249 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YD-LASRFHQA--SPIGSVIITKMD 249 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HH-HHHHHHHH--CSSEEEEEECGG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HH-HHHHHhcc--cCCcEEEEeccc
Confidence 12467899999999643 22 1111 1 12357999999998764332 21 44444432 356889999999
Q ss_pred CcccccchhHhhhhHHHHHHHhccCcEEEcCccccccc
Q 010254 131 LRDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (514)
Q Consensus 131 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~ 168 (514)
.... ......+....+. |+..++. |+++
T Consensus 250 ~~a~------~G~als~~~~~g~--Pi~fig~--Ge~v 277 (433)
T 3kl4_A 250 GTAK------GGGALSAVVATGA--TIKFIGT--GEKI 277 (433)
T ss_dssp GCSC------HHHHHHHHHHHTC--EEEEEEC--CSSS
T ss_pred cccc------chHHHHHHHHHCC--CEEEEEC--CCCh
Confidence 8654 1122233333332 7766665 5544
No 438
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.93 E-value=2.9e-05 Score=81.40 Aligned_cols=69 Identities=17% Similarity=0.115 Sum_probs=39.0
Q ss_pred eEEEEEeCCCCccch-------------hhHHHhhhc-cCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEec
Q 010254 63 VPITIIDTPSSVEDR-------------GKLGEELRR-ADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCK 128 (514)
Q Consensus 63 ~~~~l~Dt~G~~~~~-------------~~~~~~~~~-ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK 128 (514)
..+.++|.||+.... ..+..++.+ ..+++++++.+....-.... .++..+... +.+.|+|+||
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l-~la~~v~~~--g~rtI~VlTK 223 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEAL-SMAQEVDPE--GDRTIGILTK 223 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHH-HHHHHHCSS--CCSEEEEEEC
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHH-HHHHHHhhc--CCceEEEecc
Confidence 458999999864321 122344444 35666666654332222222 255555443 6899999999
Q ss_pred ccCccc
Q 010254 129 LDLRDE 134 (514)
Q Consensus 129 ~Dl~~~ 134 (514)
.|+.+.
T Consensus 224 ~Dlv~~ 229 (608)
T 3szr_A 224 PDLVDK 229 (608)
T ss_dssp GGGSSS
T ss_pred hhhcCc
Confidence 998864
No 439
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.82 E-value=6.1e-05 Score=71.44 Aligned_cols=112 Identities=18% Similarity=0.170 Sum_probs=66.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc------CCCCCC-CCCCCC-------------------C-c-cccc--------cee
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAA------DTFPAN-VPPVLP-------------------P-T-RLPE--------DFY 59 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~------~~~~~~-~~~~~~-------------------~-t-t~~~--------~~~ 59 (514)
+-.|+++|++|+||||++..|.+ .+..-. .....+ . . ..+. ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 66789999999999999999973 221000 000000 0 0 0000 001
Q ss_pred CCeeEEEEEeCCCCcc--chhhHH------HhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEeccc
Q 010254 60 PDRVPITIIDTPSSVE--DRGKLG------EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLD 130 (514)
Q Consensus 60 ~~~~~~~l~Dt~G~~~--~~~~~~------~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D 130 (514)
..++.+.|+||||... ...... ..+..+|.+++|+|+... .+... ....+.. ..| ..+|.||+|
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~-~~~~~~~---~~~i~gvVlnk~D 250 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYD-LASKFNQ---ASKIGTIIITKMD 250 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHH-HHHHHHH---TCTTEEEEEECGG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHH-HHHHHHh---hCCCCEEEEeCCC
Confidence 1467899999999876 332221 235579999999997643 22221 3333333 456 789999999
Q ss_pred Cccc
Q 010254 131 LRDE 134 (514)
Q Consensus 131 l~~~ 134 (514)
....
T Consensus 251 ~~~~ 254 (297)
T 1j8m_F 251 GTAK 254 (297)
T ss_dssp GCTT
T ss_pred CCcc
Confidence 7543
No 440
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.68 E-value=4.7e-05 Score=76.07 Aligned_cols=127 Identities=10% Similarity=0.079 Sum_probs=67.6
Q ss_pred EEEEEeCCCCCChHHHHHHhhCC------CCCC----CCCC-------------------CC-CccEE--E--EEEECCC
Q 010254 370 FQCFVFGPKKAGKSVLLNSFLGR------PFSD----NYTP-------------------TT-DERYA--V--NVVDQPG 415 (514)
Q Consensus 370 ~ki~iiG~~~vGKSsLi~~l~~~------~~~~----~~~~-------------------~~-~~~~~--~--~~~~~~~ 415 (514)
..|+++|++||||||+++.|... .... .+.+ .. ++... + ..+...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~- 178 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF- 178 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh-
Confidence 45899999999999999999752 1110 0000 00 00000 0 011111
Q ss_pred CcEEEEEEecCChhH-----HHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCC-c-EEEEEeC
Q 010254 416 GTKKTVVLREIPEEA-----VAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEV-P-CLIVAAK 488 (514)
Q Consensus 416 ~~~~~~i~dt~g~~~-----~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~-p-~ilv~nK 488 (514)
....++++||+|... +..+.. ...+..+|.+++|.|++... ........+.. .. | ..+|.||
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~-i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~-------~~~~i~gvVlnK 247 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQ-IKEITNPDEIILVIDGTIGQ---QAGIQAKAFKE-------AVGEIGSIIVTK 247 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHH-TTSSSCCSEEEEEEEGGGGG---GHHHHHHHHHT-------TSCSCEEEEEEC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHH-HHHHhcCcceeEEeeccccH---HHHHHHHHHhh-------cccCCeEEEEeC
Confidence 234567889999432 221211 22334789999999987653 12222222321 35 6 8899999
Q ss_pred CCCcccccchhhHHHHHHHcCCc
Q 010254 489 DDLDSFAMAIQDSTRVFTFLVMV 511 (514)
Q Consensus 489 ~Dl~~~~~~~~~~~~~~~~~~~~ 511 (514)
+|..... .....+....+.+
T Consensus 248 ~D~~~~~---g~~l~~~~~~~~p 267 (432)
T 2v3c_C 248 LDGSAKG---GGALSAVAETKAP 267 (432)
T ss_dssp SSSCSTT---HHHHHHHHHSSCC
T ss_pred CCCccch---HHHHHHHHHHCCC
Confidence 9986421 1223355555544
No 441
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.67 E-value=3.5e-05 Score=79.62 Aligned_cols=62 Identities=18% Similarity=0.175 Sum_probs=38.9
Q ss_pred CCeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCC-CCCcc--EEEEEEECC-CCcEEEEEEecCCh
Q 010254 367 RNVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTP-TTDER--YAVNVVDQP-GGTKKTVVLREIPE 428 (514)
Q Consensus 367 ~~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~-~~~~~--~~~~~~~~~-~~~~~~~i~dt~g~ 428 (514)
....+|+|+|.||||||||+|+|++......... +.+.+ .......++ .....+.++||+|.
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi 101 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL 101 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCc
Confidence 4568899999999999999999999875321111 11111 111111221 14456778899994
No 442
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.52 E-value=6.8e-05 Score=74.79 Aligned_cols=26 Identities=31% Similarity=0.211 Sum_probs=22.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcC
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAAD 39 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~ 39 (514)
..-.-|+|+|++++|||||+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 34567999999999999999999964
No 443
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.47 E-value=0.00021 Score=63.02 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=24.2
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCC
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADT 40 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~ 40 (514)
.+.+--|+|+|++|||||||+++|.+..
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3566789999999999999999999754
No 444
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.47 E-value=7.2e-05 Score=65.76 Aligned_cols=77 Identities=9% Similarity=0.039 Sum_probs=45.6
Q ss_pred ChhHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHH---HhcCCCCCCCCcEEEEEeCC-CCcccccchhhHH
Q 010254 427 PEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEV---ASYGEDTGFEVPCLIVAAKD-DLDSFAMAIQDST 502 (514)
Q Consensus 427 g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~---~~~~~~~~~~~p~ilv~nK~-Dl~~~~~~~~~~~ 502 (514)
|++.++.+| +.++.++|++|+|+|++|++.++ ...-+..+ .... ....+.|++|.+||. |+.. .. .+.
T Consensus 111 GQ~klRplW--r~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee-~~L~gapLLVlANKqqDlp~-Am---s~~ 182 (227)
T 3l82_B 111 SRYSVIPQI--QKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPA-FGSSGRPLLVLSCISQGDVK-RM---PCF 182 (227)
T ss_dssp ------CCH--HHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTT-SSCSCSCEEEEEEESSTTSC-BC---CHH
T ss_pred cHHHHHHHH--HHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcch-hhhCCCeEEEEeCCCcCccC-CC---CHH
Confidence 678888888 68999999999999999986554 33333222 2211 111279999999995 6754 22 334
Q ss_pred HHHHHcCCc
Q 010254 503 RVFTFLVMV 511 (514)
Q Consensus 503 ~~~~~~~~~ 511 (514)
++++.+++.
T Consensus 183 EI~e~L~L~ 191 (227)
T 3l82_B 183 YLAHELHLN 191 (227)
T ss_dssp HHHHHTTGG
T ss_pred HHHHHcCCc
Confidence 455555543
No 445
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.46 E-value=0.0004 Score=69.06 Aligned_cols=130 Identities=12% Similarity=0.106 Sum_probs=68.8
Q ss_pred eEEEEEeCCCCCChHHHHHHhh------CCCCCC----CCCCC-------CCccEEEEEEECCC----------------
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFL------GRPFSD----NYTPT-------TDERYAVNVVDQPG---------------- 415 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~------~~~~~~----~~~~~-------~~~~~~~~~~~~~~---------------- 415 (514)
+..|+++|++||||||++..|. +.+... .+.+. .+....+..+....
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4679999999999999999887 222111 11110 00000111111110
Q ss_pred -CcEEEEEEecCChh-----HHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCC
Q 010254 416 -GTKKTVVLREIPEE-----AVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKD 489 (514)
Q Consensus 416 -~~~~~~i~dt~g~~-----~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 489 (514)
....++++||+|.. ....+.. ......+|.+++|.|++.... .......+... -.+..+|.||+
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~-i~~~~~pd~vlLVvDA~~gq~---a~~~a~~f~~~------~~i~gVIlTKl 249 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQ-ISNVIHPHEVILVIDGTIGQQ---AYNQALAFKEA------TPIGSIIVTKL 249 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHH-HHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHHS------CTTEEEEEECC
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHH-HHHhhcCceEEEEEeCCCchh---HHHHHHHHHhh------CCCeEEEEECC
Confidence 12456788999931 1111111 122345799999999986532 22233444433 24567899999
Q ss_pred CCcccccchhhHHHHHHHcCCc
Q 010254 490 DLDSFAMAIQDSTRVFTFLVMV 511 (514)
Q Consensus 490 Dl~~~~~~~~~~~~~~~~~~~~ 511 (514)
|.... ...+..+....+.|
T Consensus 250 D~~~~---gG~~ls~~~~~g~P 268 (443)
T 3dm5_A 250 DGSAK---GGGALSAVAATGAP 268 (443)
T ss_dssp SSCSS---HHHHHHHHHTTCCC
T ss_pred CCccc---ccHHHHHHHHHCCC
Confidence 98753 22233344445554
No 446
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.46 E-value=0.00024 Score=70.28 Aligned_cols=112 Identities=17% Similarity=0.158 Sum_probs=59.0
Q ss_pred eEEEEEeCCCCCChHHHHHHhhCCCCCCCCCC-CCCccE--EEEEEECCCCcEEEEEEecCChh----HHHhhhcCcccc
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTP-TTDERY--AVNVVDQPGGTKKTVVLREIPEE----AVAKLLSNKDSL 441 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~i~dt~g~~----~~~~~~~~~~~~ 441 (514)
...++++|++|+|||||+|.+.|-........ ..+... .......+ ......++|+.|.. ....... ...+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~-~~~L 146 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLE-KMKF 146 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHH-HTTG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHH-HcCC
Confidence 35799999999999999999998543322111 111110 01112222 11234467887732 1121221 1223
Q ss_pred ccCcEEEEEEeCCChhhHHHHHHHH-HHHHhcCCCCCCCCcEEEEEeCCCCc
Q 010254 442 AACDIAVFVHDSSDESSWKRATELL-VEVASYGEDTGFEVPCLIVAAKDDLD 492 (514)
Q Consensus 442 ~~~d~vilv~D~~~~~s~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~ 492 (514)
...+.+++ ++... ++..+..+ ..+... +.|+++|.||.|+.
T Consensus 147 ~~~~~~~~-lS~G~---~~kqrv~la~aL~~~------~~p~~lV~tkpdll 188 (413)
T 1tq4_A 147 YEYDFFII-ISATR---FKKNDIDIAKAISMM------KKEFYFVRTKVDSD 188 (413)
T ss_dssp GGCSEEEE-EESSC---CCHHHHHHHHHHHHT------TCEEEEEECCHHHH
T ss_pred CccCCeEE-eCCCC---ccHHHHHHHHHHHhc------CCCeEEEEecCccc
Confidence 44466555 77652 12233333 233332 58999999999974
No 447
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.38 E-value=0.00075 Score=73.03 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAAD 39 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~ 39 (514)
.-.|+++|+||||||++...|...
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 446999999999999999998764
No 448
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.37 E-value=0.00041 Score=66.62 Aligned_cols=139 Identities=13% Similarity=0.110 Sum_probs=74.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCC----CCCC--CC-CC---------cccccce-------------------
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPA----NVPP--VL-PP---------TRLPEDF------------------- 58 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~----~~~~--~~-~~---------tt~~~~~------------------- 58 (514)
..+--|+|+|++||||||+++.|.+.-... .... .. .. ......+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 457789999999999999999998631000 0000 00 00 0000000
Q ss_pred -eCCeeEEEEEeCCCCccchhhHHH------hhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccC
Q 010254 59 -YPDRVPITIIDTPSSVEDRGKLGE------ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDL 131 (514)
Q Consensus 59 -~~~~~~~~l~Dt~G~~~~~~~~~~------~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl 131 (514)
...+..+.++||+|.......... ..-..|-.++++|+.... ++.. .+..+.+. -..-++++||.|.
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~-~~~~~~~~--~~it~iilTKlD~ 280 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVE-QARQFNEA--VKIDGIILTKLDA 280 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHH-HHHHHHHH--SCCCEEEEECGGG
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHH-HHHHHHHh--cCCCEEEEeCcCC
Confidence 012355788999998543322111 123589999999976543 2222 33334332 2334788999996
Q ss_pred cccccchhHhhhhHHHHHHHhccCcEEEcCccccccc
Q 010254 132 RDENQQVSLEQVMMPIMQQFREIETCIECSALKQIQV 168 (514)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa~~~~~~ 168 (514)
... -..+..+....+. |+..++ +|+++
T Consensus 281 ~a~------~G~~l~~~~~~~~--pi~~i~--~Ge~v 307 (328)
T 3e70_C 281 DAR------GGAALSISYVIDA--PILFVG--VGQGY 307 (328)
T ss_dssp CSC------CHHHHHHHHHHTC--CEEEEE--CSSST
T ss_pred ccc------hhHHHHHHHHHCC--CEEEEe--CCCCc
Confidence 433 1112234444443 666666 55533
No 449
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.36 E-value=0.00016 Score=72.23 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=64.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh-------cCCCCCC-CCCCCCCc-------------c-cc-------c--------c
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAA-------ADTFPAN-VPPVLPPT-------------R-LP-------E--------D 57 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~-------~~~~~~~-~~~~~~~t-------------t-~~-------~--------~ 57 (514)
....|+++|.+||||||+...|. |.+..-. ..+..+.. . ++ . .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34678899999999999999998 4332100 00000000 0 00 0 0
Q ss_pred eeCCeeEEEEEeCCCCccchhhHHH------hhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEeccc
Q 010254 58 FYPDRVPITIIDTPSSVEDRGKLGE------ELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLD 130 (514)
Q Consensus 58 ~~~~~~~~~l~Dt~G~~~~~~~~~~------~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~D 130 (514)
....++.+.|+||||.......... .+..+|.+++|+|+..... ... ....+.. ..+ .-+|+||+|
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~-~~~~f~~---~l~i~gvVlnK~D 251 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AAN-TAKAFNE---ALPLTGVVLTKVD 251 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHH-HHHHHHH---HSCCCCEEEECTT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHH-HHHHHhc---cCCCeEEEEecCC
Confidence 1124678999999997543222211 2447899999999875432 221 2233332 344 357999999
Q ss_pred Cccc
Q 010254 131 LRDE 134 (514)
Q Consensus 131 l~~~ 134 (514)
....
T Consensus 252 ~~~~ 255 (433)
T 2xxa_A 252 GDAR 255 (433)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 7543
No 450
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.25 E-value=0.001 Score=72.06 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAAD 39 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~ 39 (514)
.+-.++|+|+||+|||++...|...
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999864
No 451
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.17 E-value=0.0007 Score=70.97 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.5
Q ss_pred EEEEeCCCCCChHHHHHHhhCCCCC
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRPFS 395 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~~~ 395 (514)
.++|+|++|+|||||++.+.|-..+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 4999999999999999999997543
No 452
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.07 E-value=0.002 Score=61.10 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAA 38 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~ 38 (514)
.+-.|+|+|++|||||||++.|.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456899999999999999999985
No 453
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.06 E-value=0.00012 Score=74.53 Aligned_cols=105 Identities=12% Similarity=0.052 Sum_probs=62.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcc-----cccceeCCeeEEEEEeCCCCccc--hhhH------
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTR-----LPEDFYPDRVPITIIDTPSSVED--RGKL------ 80 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt-----~~~~~~~~~~~~~l~Dt~G~~~~--~~~~------ 80 (514)
..++.|+++|.||+||||+.++|...-....+. ... .............+||+.|.+.+ ....
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~----t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~ 112 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVP----TREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALN 112 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCC----EEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCC----ceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHH
Confidence 456899999999999999999998643111111 000 00111111234467888886322 2221
Q ss_pred --HHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEE
Q 010254 81 --GEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVG 126 (514)
Q Consensus 81 --~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~ 126 (514)
..++..+++.++|+|.++. +.+... .|...+++. +.+++.+-
T Consensus 113 ~~~~~l~~~~G~~vV~D~tn~-~~~~R~-~~~~~~~~~--~~~vv~l~ 156 (469)
T 1bif_A 113 DVRKFLSEEGGHVAVFDATNT-TRERRA-MIFNFGEQN--GYKTFFVE 156 (469)
T ss_dssp HHHHHHHTTCCSEEEEESCCC-SHHHHH-HHHHHHHHH--TCEEEEEE
T ss_pred HHHHHHHhCCCCEEEEeCCCC-CHHHHH-HHHHHHHhc--CCcEEEEE
Confidence 3456668888999999876 444443 377777765 44555444
No 454
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.01 E-value=0.0011 Score=66.59 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhc
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAA 38 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~ 38 (514)
..+-.|+|+|.+|+|||||++.|.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 4567899999999999999999986
No 455
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.97 E-value=0.00028 Score=68.29 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADT 40 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~ 40 (514)
+-.++|+|++|||||||+|.|.+..
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 3479999999999999999999876
No 456
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.91 E-value=0.00044 Score=68.75 Aligned_cols=82 Identities=10% Similarity=-0.001 Sum_probs=45.3
Q ss_pred cEEEEEEecCChhH-------HHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCC
Q 010254 417 TKKTVVLREIPEEA-------VAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKD 489 (514)
Q Consensus 417 ~~~~~i~dt~g~~~-------~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 489 (514)
...++++||+|... ...+.. .......|.+++|.|++.... .......+.... .+..+|.||+
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~-i~~~~~pd~vlLVlDa~~gq~---a~~~a~~f~~~~------~~~gVIlTKl 248 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKE-MYDVLKPDDVILVIDASIGQK---AYDLASRFHQAS------PIGSVIITKM 248 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHH-HHHHHCCSEEEEEEEGGGGGG---GHHHHHHHHHHC------SSEEEEEECG
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHH-HHHhhCCcceEEEEeCccchH---HHHHHHHHhccc------CCcEEEEecc
Confidence 34567889999422 111110 011124689999999986532 223334444332 4678899999
Q ss_pred CCcccccchhhHHHHHHHcCCc
Q 010254 490 DLDSFAMAIQDSTRVFTFLVMV 511 (514)
Q Consensus 490 Dl~~~~~~~~~~~~~~~~~~~~ 511 (514)
|.... ...+..++...+.|
T Consensus 249 D~~a~---~G~als~~~~~g~P 267 (433)
T 3kl4_A 249 DGTAK---GGGALSAVVATGAT 267 (433)
T ss_dssp GGCSC---HHHHHHHHHHHTCE
T ss_pred ccccc---chHHHHHHHHHCCC
Confidence 97642 22334444455555
No 457
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.88 E-value=0.0064 Score=58.10 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhc
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAA 38 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~ 38 (514)
..+-.|+|+|++|+||||++..|.+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 458
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.76 E-value=0.0017 Score=61.42 Aligned_cols=82 Identities=15% Similarity=0.063 Sum_probs=45.9
Q ss_pred EEEEEEecCChhH--HH-hhhc---CccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCc-EEEEEeCCC
Q 010254 418 KKTVVLREIPEEA--VA-KLLS---NKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVP-CLIVAAKDD 490 (514)
Q Consensus 418 ~~~~i~dt~g~~~--~~-~~~~---~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D 490 (514)
..++++||+|... .. .+.. .......+|.+++|.|++.. +........+.. ..| ..+|.||+|
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-------~~~i~gvVlnk~D 250 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-------ASKIGTIIITKMD 250 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-------TCTTEEEEEECGG
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-------hCCCCEEEEeCCC
Confidence 3577889999644 11 1110 00123468999999998743 222222333332 245 778999999
Q ss_pred CcccccchhhHHHHHHHcCCcc
Q 010254 491 LDSFAMAIQDSTRVFTFLVMVL 512 (514)
Q Consensus 491 l~~~~~~~~~~~~~~~~~~~~~ 512 (514)
.... ......++..++.|.
T Consensus 251 ~~~~---~g~~~~~~~~~~~pi 269 (297)
T 1j8m_F 251 GTAK---GGGALSAVAATGATI 269 (297)
T ss_dssp GCTT---HHHHHHHHHTTTCCE
T ss_pred CCcc---hHHHHHHHHHHCcCE
Confidence 7642 233445666666553
No 459
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.70 E-value=0.00084 Score=66.96 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=21.9
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCC
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGR 392 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~ 392 (514)
...-|+|+|++++|||+|+|+|++.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4567999999999999999999863
No 460
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.65 E-value=0.011 Score=55.90 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAA 38 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~ 38 (514)
.+-.|+|+|++|+||||++..|.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 456799999999999999999875
No 461
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.57 E-value=0.0035 Score=59.28 Aligned_cols=114 Identities=13% Similarity=0.153 Sum_probs=62.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC-----CCCCCC-C--CCCcc-----------cccc--e----------eCCee
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTF-----PANVPP-V--LPPTR-----------LPED--F----------YPDRV 63 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~-----~~~~~~-~--~~~tt-----------~~~~--~----------~~~~~ 63 (514)
.+-.|+|+|++||||||++..|.+.-. ...+.. . .+... ++.. . ...++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 456899999999999999999874210 000000 0 00000 0000 0 12467
Q ss_pred EEEEEeCCCCccchhh-HH---Hhhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCccc
Q 010254 64 PITIIDTPSSVEDRGK-LG---EELR--RADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRDE 134 (514)
Q Consensus 64 ~~~l~Dt~G~~~~~~~-~~---~~~~--~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 134 (514)
.+.|+||+|....... .. ..+. ..+.+++|+|++.. ...+.. +...+... + ..-+|.||.|....
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~-~~~~~~~l--~-~~giVltk~D~~~~ 254 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKH-IVKRFSSV--P-VNQYIFTKIDETTS 254 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHH-HTTTTSSS--C-CCEEEEECTTTCSC
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHH-HHHHHhcC--C-CCEEEEeCCCcccc
Confidence 8999999998654322 21 2222 36778999987632 333332 33333221 2 23566799997643
No 462
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.56 E-value=0.0068 Score=53.72 Aligned_cols=67 Identities=10% Similarity=-0.009 Sum_probs=48.7
Q ss_pred CeeEEEEEeCCCCccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhc---CCCCcEEEEEecccCc
Q 010254 61 DRVPITIIDTPSSVEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRL---EVKVPVIVVGCKLDLR 132 (514)
Q Consensus 61 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~ 132 (514)
+.+.+.|+|||+.. .......+..+|.+++++..+... ..... +.+.++.. .++.++.+|.|+.|..
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAG-SVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHH-HHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHH-HHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 35789999999865 345567788899999999876443 44443 66666654 2357889999999954
No 463
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.56 E-value=0.00095 Score=61.72 Aligned_cols=77 Identities=9% Similarity=0.040 Sum_probs=47.8
Q ss_pred ChhHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHH---HHHhcCCCCCCCCcEEEEEeC-CCCcccccchhhHH
Q 010254 427 PEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLV---EVASYGEDTGFEVPCLIVAAK-DDLDSFAMAIQDST 502 (514)
Q Consensus 427 g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~---~~~~~~~~~~~~~p~ilv~nK-~Dl~~~~~~~~~~~ 502 (514)
|++.++.+| +.++.++|++|+|+|++|++.++ ....+. .+...... ..+.|++|.+|| .|+.. .. .+.
T Consensus 196 GQ~~lRplW--r~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~-l~~apLLVfANKkQDlp~-Am---s~~ 267 (312)
T 3l2o_B 196 SRYSVIPQI--QKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFG-SSGRPLLVLSCISQGDVK-RM---PCF 267 (312)
T ss_dssp -CCCCCHHH--HHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHH-CTTCCEEEEEEESSTTSC-BC---CHH
T ss_pred CHHHHHHHH--HHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhh-cCCCeEEEEeCCcccccC-CC---CHH
Confidence 466777788 68999999999999999987654 222111 22211000 017999999997 58754 22 244
Q ss_pred HHHHHcCCc
Q 010254 503 RVFTFLVMV 511 (514)
Q Consensus 503 ~~~~~~~~~ 511 (514)
++++.+++.
T Consensus 268 EI~e~L~L~ 276 (312)
T 3l2o_B 268 YLAHELHLN 276 (312)
T ss_dssp HHHHHTTGG
T ss_pred HHHHHcCCc
Confidence 566666543
No 464
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.48 E-value=0.0013 Score=57.11 Aligned_cols=24 Identities=29% Similarity=0.642 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 010254 17 VRIVVCGEKGTGKSSLIVTAAADT 40 (514)
Q Consensus 17 ~~I~ivG~~nvGKSsLin~l~~~~ 40 (514)
.+++|+|++|+|||||++.|.+.-
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998753
No 465
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.37 E-value=0.0018 Score=56.40 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=22.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADT 40 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~ 40 (514)
.+--|+|+|++|||||||++.|.+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34579999999999999999998753
No 466
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.37 E-value=0.027 Score=60.30 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADT 40 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~ 40 (514)
..--|++.|+||+|||+|..++.+.-
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34569999999999999999998753
No 467
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.37 E-value=0.0015 Score=57.08 Aligned_cols=22 Identities=45% Similarity=0.671 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 010254 19 IVVCGEKGTGKSSLIVTAAADT 40 (514)
Q Consensus 19 I~ivG~~nvGKSsLin~l~~~~ 40 (514)
|+|+|++|||||||+++|+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999998754
No 468
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.33 E-value=0.0015 Score=57.94 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAAD 39 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~ 39 (514)
+-.++|+|++|+|||||++.|.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457999999999999999999874
No 469
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.18 E-value=0.01 Score=58.87 Aligned_cols=66 Identities=21% Similarity=0.213 Sum_probs=39.4
Q ss_pred CeeEEEEEeCCCCccchh-hHH-----HhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCc-EEEEEecccCcc
Q 010254 61 DRVPITIIDTPSSVEDRG-KLG-----EELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVP-VIVVGCKLDLRD 133 (514)
Q Consensus 61 ~~~~~~l~Dt~G~~~~~~-~~~-----~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~ 133 (514)
.++.+.|+||||...... ... ..+-.+|.+++|+|+... .+... ....+.. ..+ .-+|.||.|...
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~-~a~~f~~---~l~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALS-VARAFDE---KVGVTGLVLTKLDGDA 251 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHH-HHHHHHH---HTCCCEEEEESGGGCS
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHH-HHHHHHh---cCCceEEEEeCcCCcc
Confidence 456799999999754322 121 113368999999997643 22222 2333332 233 567899999754
No 470
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.14 E-value=0.01 Score=52.91 Aligned_cols=68 Identities=18% Similarity=0.158 Sum_probs=47.6
Q ss_pred CeeEEEEEeCCCC-ccchhhHHHhhhccCEEEEEEeCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEecccCcc
Q 010254 61 DRVPITIIDTPSS-VEDRGKLGEELRRADAVVLTYACDRPETLDELSTFWLPELRRLEVKVPVIVVGCKLDLRD 133 (514)
Q Consensus 61 ~~~~~~l~Dt~G~-~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~ 133 (514)
+.+.+.|+|||+. .. ......+..+|.+|+++..+ ..+...... ++..++... +.++.+|.|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~-~~~~l~~~~-~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALML-TIETLQKLG-NNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHH-HHHHHHHTC-SSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHH-HHHHHHhcc-CCCEEEEEEecCCcc
Confidence 3577999999985 32 24456788999999999854 334444443 566666532 567899999998654
No 471
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.04 E-value=0.012 Score=49.00 Aligned_cols=93 Identities=13% Similarity=0.044 Sum_probs=49.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcccccceeCCeeEEEEEeCCCCccchhhHHHhhhccCEEEEEE
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADTFPANVPPVLPPTRLPEDFYPDRVPITIIDTPSSVEDRGKLGEELRRADAVVLTY 94 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 94 (514)
.+..|.|.|+||+|||++..++....... +.++. ++.+..... ......+..++.-++++
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~------------------~~~~v-~~~~~~~~~-~~~~~~~~~a~~g~l~l 82 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNA------------------QGEFV-YRELTPDNA-PQLNDFIALAQGGTLVL 82 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTT------------------TSCCE-EEECCTTTS-SCHHHHHHHHTTSCEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCcc------------------CCCEE-EECCCCCcc-hhhhcHHHHcCCcEEEE
Confidence 34569999999999999999997653111 11233 444433222 12223334444445566
Q ss_pred eCCCcccHHHHHHHHHHHHHhcCCCCcEEEEEec
Q 010254 95 ACDRPETLDELSTFWLPELRRLEVKVPVIVVGCK 128 (514)
Q Consensus 95 d~~~~~s~~~~~~~~~~~l~~~~~~~pvilv~NK 128 (514)
|--+.-+.. .+..++..+.....+..+|...|+
T Consensus 83 dei~~l~~~-~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 83 SHPEHLTRE-QQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ECGGGSCHH-HHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cChHHCCHH-HHHHHHHHHhhcCCCEEEEEECCc
Confidence 633333322 233366666554345556666654
No 472
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.03 E-value=0.0042 Score=54.43 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.6
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcC
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAAD 39 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~ 39 (514)
...+-.|+|+|++|+|||||++.|.+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 345667999999999999999999886
No 473
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.96 E-value=0.0042 Score=55.45 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=23.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCC
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADT 40 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~ 40 (514)
+.+--|+|+|++|||||||++.|.+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 456679999999999999999999764
No 474
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.95 E-value=0.003 Score=54.87 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.3
Q ss_pred EEEEeCCCCCChHHHHHHhhCCC
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGRP 393 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~~ 393 (514)
+++++|++|+|||||++.+.+.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999987643
No 475
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.92 E-value=0.004 Score=56.05 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=23.5
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCC
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADT 40 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~ 40 (514)
++.+--++|+|++|||||||++.|.+..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3456789999999999999999999865
No 476
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.90 E-value=0.00046 Score=70.16 Aligned_cols=101 Identities=16% Similarity=0.064 Sum_probs=55.3
Q ss_pred CeEEEEEeCCCCCChHHHHHHhhCCCCCCCCCCCCCccEEEEE--EECCCCcEEEEEEecCChhHH--Hhhh------cC
Q 010254 368 NVFQCFVFGPKKAGKSVLLNSFLGRPFSDNYTPTTDERYAVNV--VDQPGGTKKTVVLREIPEEAV--AKLL------SN 437 (514)
Q Consensus 368 ~~~ki~iiG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~dt~g~~~~--~~~~------~~ 437 (514)
...+|+++|.||+||||+.++|...-..... ++.. +.... ....++.....+||+.|.+.+ ...+ ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~-~t~~--~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~ 114 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGV-PTRE--FNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV 114 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEE--EEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCC-CceE--EecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999999754221100 1100 00000 000101112235788886322 2111 01
Q ss_pred ccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhc
Q 010254 438 KDSLAACDIAVFVHDSSDESSWKRATELLVEVASY 472 (514)
Q Consensus 438 ~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~ 472 (514)
..++..+++.++|+|+++. +++....|+..+...
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 2345567888999999987 455566666655543
No 477
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.89 E-value=0.004 Score=55.58 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=24.4
Q ss_pred CCceeEEEEEcCCCCCHHHHHHHHhcCC
Q 010254 13 GKTGVRIVVCGEKGTGKSSLIVTAAADT 40 (514)
Q Consensus 13 ~~~~~~I~ivG~~nvGKSsLin~l~~~~ 40 (514)
...+..|+|+|++|+|||||++.|.+.-
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999998753
No 478
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.86 E-value=0.0045 Score=54.90 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=22.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAAD 39 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~ 39 (514)
.+--|+|+|++|+|||||++.|.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4567999999999999999999885
No 479
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.81 E-value=0.004 Score=54.46 Aligned_cols=22 Identities=45% Similarity=0.671 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 010254 19 IVVCGEKGTGKSSLIVTAAADT 40 (514)
Q Consensus 19 I~ivG~~nvGKSsLin~l~~~~ 40 (514)
++|+|++|+|||||++.|.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7899999999999999999753
No 480
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.80 E-value=0.004 Score=55.47 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=23.2
Q ss_pred CCCceeEEEEEcCCCCCHHHHHHHHhcCC
Q 010254 12 GGKTGVRIVVCGEKGTGKSSLIVTAAADT 40 (514)
Q Consensus 12 ~~~~~~~I~ivG~~nvGKSsLin~l~~~~ 40 (514)
....+=-++|+|++|+|||||++.|.+-.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34556679999999999999999998864
No 481
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.77 E-value=0.0042 Score=55.88 Aligned_cols=27 Identities=30% Similarity=0.548 Sum_probs=22.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCC
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADT 40 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~ 40 (514)
..+-.++|+|++|+|||||++.|.+..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345579999999999999999999854
No 482
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.75 E-value=0.0039 Score=54.18 Aligned_cols=22 Identities=14% Similarity=0.431 Sum_probs=19.9
Q ss_pred EEEEeCCCCCChHHHHHHhhCC
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGR 392 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~ 392 (514)
-++++|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999864
No 483
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.75 E-value=0.015 Score=58.05 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=19.4
Q ss_pred eEEEEEeCCCCCChHHHHHHhh
Q 010254 369 VFQCFVFGPKKAGKSVLLNSFL 390 (514)
Q Consensus 369 ~~ki~iiG~~~vGKSsLi~~l~ 390 (514)
...|+++|.+||||||++..|.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3568889999999999999887
No 484
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.63 E-value=0.0042 Score=54.64 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.9
Q ss_pred EEEEeCCCCCChHHHHHHhhCC
Q 010254 371 QCFVFGPKKAGKSVLLNSFLGR 392 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~~ 392 (514)
-++++|++|||||||+++|++.
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4889999999999999999864
No 485
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.62 E-value=0.0062 Score=54.02 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=23.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCC
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADT 40 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~ 40 (514)
+.+..|+|+|++|+|||||++.|.+.-
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 456689999999999999999998764
No 486
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.61 E-value=0.0065 Score=55.76 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHh
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAA 37 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~ 37 (514)
+.+..|+|+|++|+|||||++.|.
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999998
No 487
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.60 E-value=0.0048 Score=54.58 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=19.4
Q ss_pred EEEEeCCCCCChHHHHHHhhC
Q 010254 371 QCFVFGPKKAGKSVLLNSFLG 391 (514)
Q Consensus 371 ki~iiG~~~vGKSsLi~~l~~ 391 (514)
.++++|++|+|||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999976
No 488
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.58 E-value=0.0057 Score=52.65 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAA 38 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~ 38 (514)
.+=-++|+|++|+|||||++.+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 345689999999999999997553
No 489
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.56 E-value=0.0055 Score=52.64 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAAD 39 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~ 39 (514)
+..|+|+|++|+|||||.+.|.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999875
No 490
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.56 E-value=0.0056 Score=54.21 Aligned_cols=24 Identities=42% Similarity=0.407 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAAD 39 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~ 39 (514)
...|+|+|.+|+||||+.+.|...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999764
No 491
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.53 E-value=0.0068 Score=54.05 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=22.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcC
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAAD 39 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~ 39 (514)
..+..|+|+|++|+|||||++.|.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35578999999999999999999885
No 492
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.50 E-value=0.036 Score=48.93 Aligned_cols=87 Identities=8% Similarity=-0.024 Sum_probs=55.2
Q ss_pred EEEEEEecCChhHHHhhhcCccccccCcEEEEEEeCCChhhHHHHHHHHHHHHhcCCCCCCCCcEEEEEeCCCCcccccc
Q 010254 418 KKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASYGEDTGFEVPCLIVAAKDDLDSFAMA 497 (514)
Q Consensus 418 ~~~~i~dt~g~~~~~~~~~~~~~~~~~d~vilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 497 (514)
..++++|+++.-... . ...+..+|.++++...+... ..+...+..+...... .++.++.+|.|++|.... .
T Consensus 76 yD~viiD~~~~~~~~--~--~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~-~~~~~~~vv~N~~~~~~~--~ 146 (206)
T 4dzz_A 76 YDFAIVDGAGSLSVI--T--SAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAY-SRKVEARFLITRKIEMAT--M 146 (206)
T ss_dssp SSEEEEECCSSSSHH--H--HHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCG-GGCCEEEEEECSBCTTEE--E
T ss_pred CCEEEEECCCCCCHH--H--HHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHh-CCCCcEEEEEeccCCCch--H
Confidence 456788998754221 1 24567899999999876554 5566666666544321 225788999999995432 2
Q ss_pred hhhHHHHHHHcCCccc
Q 010254 498 IQDSTRVFTFLVMVLY 513 (514)
Q Consensus 498 ~~~~~~~~~~~~~~~~ 513 (514)
..+..++.++++.+.+
T Consensus 147 ~~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 147 LNVLKESIKDTGVKAF 162 (206)
T ss_dssp EHHHHHHHHHHTCCBC
T ss_pred HHHHHHHHHHcCCcee
Confidence 3345566666776554
No 493
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.45 E-value=0.0081 Score=52.47 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAA 38 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~ 38 (514)
++..|+|.|.+|+||||+.+.|..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999975
No 494
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.43 E-value=0.0075 Score=53.52 Aligned_cols=27 Identities=33% Similarity=0.553 Sum_probs=22.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcCC
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAADT 40 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~~ 40 (514)
..+.-|+|+|++|||||||.++|...-
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345679999999999999999998643
No 495
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.43 E-value=0.0071 Score=55.06 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAAADT 40 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~~~~ 40 (514)
.+=.++|+|+.|+|||||++.|.|-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34468999999999999999998864
No 496
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.41 E-value=0.0095 Score=51.82 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=21.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhc
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAA 38 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~ 38 (514)
+.+..|+|+|.+|+||||+.+.|..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999975
No 497
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.40 E-value=0.01 Score=51.07 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHhcC
Q 010254 14 KTGVRIVVCGEKGTGKSSLIVTAAAD 39 (514)
Q Consensus 14 ~~~~~I~ivG~~nvGKSsLin~l~~~ 39 (514)
+.+-.|+|+|++|+||||+.+.|.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 34567999999999999999998763
No 498
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.39 E-value=0.023 Score=56.34 Aligned_cols=23 Identities=30% Similarity=0.241 Sum_probs=19.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 010254 15 TGVRIVVCGEKGTGKSSLIVTAA 37 (514)
Q Consensus 15 ~~~~I~ivG~~nvGKSsLin~l~ 37 (514)
.-.-|+|+|.+++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 34567799999999999999664
No 499
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.36 E-value=0.0079 Score=54.32 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q 010254 16 GVRIVVCGEKGTGKSSLIVTAAADT 40 (514)
Q Consensus 16 ~~~I~ivG~~nvGKSsLin~l~~~~ 40 (514)
+=.++|+|+.|+|||||++.+.|-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998864
No 500
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=95.34 E-value=0.019 Score=44.28 Aligned_cols=69 Identities=13% Similarity=0.295 Sum_probs=51.1
Q ss_pred ceecChhHHHHHHHHHHhhcCCCCCCCCHHhHHhhhccCCCCC--CCCCcccccccccCCCcccHHHHHHH
Q 010254 253 SVELTNEAIDFLKGIFELFDADDDNSLRPIEVEDLFSTAPECP--WDEAPYKDAAEKTALGGLSLDGFLSE 321 (514)
Q Consensus 253 ~~elt~~~~~~L~~iF~~fd~~~d~~l~~~~l~~~f~~~~~~p--~~~~~~~~~~~~~~~~~i~~~~~~~~ 321 (514)
..+++....+-|...|..||.|++|.++.+||..++...-..+ ..-..+-.....+..|.|++..|+..
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~D~d~dG~I~~~EF~~~ 97 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTL 97 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHHCSSCSSSBCHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCeEeHHHHHHH
Confidence 3467888888899999999999999999999999988642211 11112233445578899999998864
Done!