Query 010256
Match_columns 514
No_of_seqs 559 out of 1882
Neff 11.6
Searched_HMMs 46136
Date Thu Mar 28 22:52:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.1E-53 2.4E-58 358.5 29.4 324 31-512 111-478 (480)
2 KOG1354 Serine/threonine prote 100.0 4.4E-53 9.6E-58 350.4 23.7 428 11-514 6-433 (433)
3 KOG0271 Notchless-like WD40 re 100.0 4.7E-46 1E-50 312.7 27.3 299 14-467 139-477 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 9.8E-47 2.1E-51 320.9 23.3 283 31-467 171-456 (459)
5 KOG0318 WD40 repeat stress pro 100.0 3.5E-42 7.7E-47 301.1 39.7 429 31-513 55-558 (603)
6 COG5170 CDC55 Serine/threonine 100.0 7.2E-45 1.5E-49 298.0 18.3 440 14-514 5-459 (460)
7 KOG0272 U4/U6 small nuclear ri 100.0 2.3E-42 4.9E-47 294.4 23.5 276 113-514 176-459 (459)
8 KOG0286 G-protein beta subunit 100.0 2.3E-40 4.9E-45 269.0 29.8 293 92-467 47-341 (343)
9 KOG0319 WD40-repeat-containing 100.0 2.5E-40 5.4E-45 301.0 29.9 416 14-513 86-616 (775)
10 KOG0291 WD40-repeat-containing 100.0 1.6E-38 3.5E-43 289.7 38.5 384 31-513 141-548 (893)
11 KOG0318 WD40 repeat stress pro 100.0 9.4E-38 2E-42 273.4 39.1 383 32-513 187-600 (603)
12 KOG0279 G protein beta subunit 100.0 4.2E-38 9.2E-43 254.3 30.4 298 30-428 10-313 (315)
13 KOG0286 G-protein beta subunit 100.0 3.1E-38 6.7E-43 256.6 28.8 286 31-426 51-343 (343)
14 KOG0291 WD40-repeat-containing 100.0 5.6E-37 1.2E-41 279.7 39.8 400 31-514 185-611 (893)
15 KOG0315 G-protein beta subunit 100.0 1.8E-37 3.8E-42 246.5 30.0 267 127-467 11-284 (311)
16 KOG0273 Beta-transducin family 100.0 9.7E-38 2.1E-42 269.8 30.2 283 31-428 231-523 (524)
17 KOG0273 Beta-transducin family 100.0 5.5E-37 1.2E-41 265.1 30.7 333 32-512 175-520 (524)
18 KOG0315 G-protein beta subunit 100.0 1.6E-36 3.6E-41 241.0 28.1 296 48-449 11-308 (311)
19 KOG0285 Pleiotropic regulator 100.0 4.2E-37 9.1E-42 256.8 25.9 285 31-471 147-439 (460)
20 KOG0265 U5 snRNP-specific prot 100.0 1.7E-36 3.7E-41 247.5 28.3 286 31-467 43-334 (338)
21 KOG0295 WD40 repeat-containing 100.0 1.2E-36 2.5E-41 254.8 26.1 282 31-467 104-402 (406)
22 KOG0319 WD40-repeat-containing 100.0 3.8E-36 8.3E-41 273.8 31.5 381 31-513 58-575 (775)
23 KOG0284 Polyadenylation factor 100.0 8E-38 1.7E-42 265.5 18.9 278 35-467 96-376 (464)
24 KOG0296 Angio-associated migra 100.0 5.4E-36 1.2E-40 251.0 29.5 332 29-467 58-394 (399)
25 KOG0279 G protein beta subunit 100.0 1E-35 2.2E-40 240.5 29.9 293 92-513 7-311 (315)
26 KOG0306 WD40-repeat-containing 100.0 1.2E-35 2.6E-40 270.9 33.5 413 30-513 102-662 (888)
27 KOG0276 Vesicle coat complex C 100.0 3.8E-36 8.3E-41 268.7 29.5 282 32-467 10-295 (794)
28 KOG0263 Transcription initiati 100.0 2E-36 4.3E-41 278.5 22.8 272 35-430 378-651 (707)
29 KOG0284 Polyadenylation factor 100.0 1.4E-36 3E-41 258.0 19.1 237 229-512 134-377 (464)
30 KOG0263 Transcription initiati 100.0 9.4E-36 2E-40 274.0 25.4 302 113-504 379-703 (707)
31 KOG0293 WD40 repeat-containing 100.0 1.3E-34 2.8E-39 246.4 26.2 283 33-467 222-509 (519)
32 KOG0295 WD40 repeat-containing 100.0 6E-35 1.3E-39 244.5 22.3 277 113-512 109-403 (406)
33 KOG0645 WD40 repeat protein [G 100.0 5.2E-33 1.1E-37 223.9 32.2 291 92-510 6-305 (312)
34 KOG0266 WD40 repeat-containing 100.0 6.8E-34 1.5E-38 269.6 31.9 288 33-467 157-450 (456)
35 KOG0306 WD40-repeat-containing 100.0 1.9E-33 4.2E-38 256.6 33.1 387 12-513 43-578 (888)
36 KOG0645 WD40 repeat protein [G 100.0 1.1E-32 2.4E-37 222.1 30.3 286 32-467 11-307 (312)
37 KOG0282 mRNA splicing factor [ 100.0 1.5E-34 3.2E-39 251.1 18.9 292 28-426 207-503 (503)
38 KOG0275 Conserved WD40 repeat- 100.0 3.9E-34 8.4E-39 236.3 20.3 294 31-467 209-505 (508)
39 KOG0316 Conserved WD40 repeat- 100.0 8.5E-33 1.8E-37 218.1 26.8 265 32-452 14-281 (307)
40 KOG0285 Pleiotropic regulator 100.0 5.9E-33 1.3E-37 232.1 26.2 295 83-512 134-436 (460)
41 cd00200 WD40 WD40 domain, foun 100.0 6.6E-32 1.4E-36 245.4 35.4 280 32-467 6-287 (289)
42 KOG0278 Serine/threonine kinas 100.0 4.3E-34 9.3E-39 227.4 17.1 281 30-467 9-293 (334)
43 KOG0292 Vesicle coat complex C 100.0 3.6E-32 7.7E-37 252.7 30.6 295 34-467 8-318 (1202)
44 PLN00181 protein SPA1-RELATED; 100.0 5.7E-31 1.2E-35 268.9 41.7 254 31-430 479-740 (793)
45 KOG0265 U5 snRNP-specific prot 100.0 3.8E-32 8.3E-37 222.1 25.0 278 164-511 47-334 (338)
46 KOG0266 WD40 repeat-containing 100.0 7.9E-32 1.7E-36 255.5 31.2 282 113-513 160-452 (456)
47 KOG0313 Microtubule binding pr 100.0 7.1E-32 1.5E-36 227.4 26.9 300 26-471 96-418 (423)
48 KOG0282 mRNA splicing factor [ 100.0 1.7E-32 3.7E-37 238.3 20.2 289 93-513 207-503 (503)
49 KOG0772 Uncharacterized conser 100.0 7E-32 1.5E-36 236.2 23.9 309 32-467 164-483 (641)
50 KOG0643 Translation initiation 100.0 8.2E-31 1.8E-35 210.8 28.0 286 31-467 6-313 (327)
51 KOG0640 mRNA cleavage stimulat 100.0 1.6E-31 3.4E-36 219.5 21.9 312 31-467 108-422 (430)
52 KOG0276 Vesicle coat complex C 100.0 4.1E-31 8.9E-36 236.6 25.9 278 113-513 14-296 (794)
53 KOG1446 Histone H3 (Lys4) meth 100.0 1.4E-29 3.1E-34 209.2 32.1 278 34-461 13-295 (311)
54 cd00200 WD40 WD40 domain, foun 100.0 6.2E-30 1.3E-34 232.4 33.3 276 113-512 10-288 (289)
55 KOG0283 WD40 repeat-containing 100.0 4E-31 8.6E-36 245.8 24.8 272 33-429 265-577 (712)
56 KOG0296 Angio-associated migra 100.0 3.7E-30 8.1E-35 216.1 27.6 336 93-512 57-395 (399)
57 KOG0292 Vesicle coat complex C 100.0 5E-31 1.1E-35 245.1 24.6 290 113-513 10-319 (1202)
58 KOG0281 Beta-TrCP (transducin 100.0 4.3E-32 9.3E-37 226.2 15.5 274 34-430 196-479 (499)
59 KOG1407 WD40 repeat protein [F 100.0 1.9E-30 4.1E-35 208.1 23.8 267 113-507 21-293 (313)
60 KOG1063 RNA polymerase II elon 100.0 6.4E-30 1.4E-34 231.8 29.9 421 31-513 187-697 (764)
61 KOG1407 WD40 repeat protein [F 100.0 6.3E-30 1.4E-34 205.1 25.3 276 31-419 16-293 (313)
62 KOG1063 RNA polymerase II elon 100.0 4E-29 8.6E-34 226.7 33.5 427 31-513 50-646 (764)
63 KOG2106 Uncharacterized conser 100.0 1.2E-28 2.5E-33 215.6 33.7 385 25-513 94-518 (626)
64 KOG0277 Peroxisomal targeting 100.0 3.7E-30 7.9E-35 205.6 21.5 280 39-467 12-305 (311)
65 KOG1408 WD40 repeat protein [F 100.0 2.4E-29 5.1E-34 228.8 29.4 453 33-513 76-624 (1080)
66 KOG1539 WD repeat protein [Gen 100.0 8.5E-29 1.8E-33 229.1 31.9 395 12-513 182-646 (910)
67 PTZ00421 coronin; Provisional 100.0 2.2E-28 4.7E-33 230.7 34.0 301 18-452 5-314 (493)
68 KOG0268 Sof1-like rRNA process 100.0 1.1E-30 2.4E-35 219.0 16.2 290 19-467 50-341 (433)
69 KOG0281 Beta-TrCP (transducin 100.0 1.8E-30 3.9E-35 216.5 16.9 235 229-513 233-475 (499)
70 KOG0293 WD40 repeat-containing 100.0 1.5E-29 3.3E-34 215.6 22.2 282 111-513 223-511 (519)
71 KOG0647 mRNA export protein (c 100.0 1.5E-28 3.2E-33 201.4 27.1 280 33-459 25-311 (347)
72 KOG0288 WD40 repeat protein Ti 100.0 4E-30 8.8E-35 219.2 17.7 283 31-467 171-457 (459)
73 KOG0973 Histone transcription 100.0 5.5E-29 1.2E-33 237.7 26.6 314 35-467 13-351 (942)
74 KOG0289 mRNA splicing factor [ 100.0 1.6E-28 3.5E-33 210.8 26.4 281 35-467 219-502 (506)
75 KOG0313 Microtubule binding pr 100.0 4.8E-28 1E-32 204.4 25.5 258 230-513 141-416 (423)
76 KOG0310 Conserved WD40 repeat- 100.0 2.7E-28 5.9E-33 212.7 24.0 279 33-467 24-305 (487)
77 KOG0299 U3 snoRNP-associated p 100.0 6.9E-28 1.5E-32 208.6 26.3 297 31-459 138-443 (479)
78 KOG0277 Peroxisomal targeting 100.0 5.8E-29 1.3E-33 198.8 17.9 245 33-427 58-308 (311)
79 KOG2106 Uncharacterized conser 100.0 6.4E-26 1.4E-30 198.6 35.7 390 14-513 182-624 (626)
80 KOG0316 Conserved WD40 repeat- 100.0 1E-27 2.2E-32 189.5 22.1 276 113-514 18-298 (307)
81 KOG1408 WD40 repeat protein [F 100.0 2.8E-27 6E-32 215.5 27.6 364 39-513 328-711 (1080)
82 KOG0772 Uncharacterized conser 100.0 8.9E-28 1.9E-32 210.7 23.1 300 113-513 168-485 (641)
83 KOG0641 WD40 repeat protein [G 100.0 7.8E-26 1.7E-30 177.9 30.8 307 32-467 29-345 (350)
84 KOG0300 WD40 repeat-containing 100.0 1.1E-27 2.3E-32 197.7 21.1 322 30-467 143-472 (481)
85 KOG0305 Anaphase promoting com 100.0 3E-27 6.5E-32 214.4 25.9 279 37-430 179-463 (484)
86 KOG0283 WD40 repeat-containing 100.0 2.1E-27 4.4E-32 221.2 25.2 300 111-467 266-572 (712)
87 PTZ00420 coronin; Provisional 100.0 4.4E-26 9.6E-31 215.9 34.4 258 53-454 50-319 (568)
88 PLN00181 protein SPA1-RELATED; 100.0 2.9E-26 6.3E-31 234.4 35.2 259 32-427 529-792 (793)
89 KOG0643 Translation initiation 100.0 2.2E-26 4.8E-31 185.5 26.8 289 95-510 5-311 (327)
90 KOG0310 Conserved WD40 repeat- 100.0 2.5E-27 5.5E-32 206.7 23.2 272 176-512 31-305 (487)
91 KOG1446 Histone H3 (Lys4) meth 100.0 6.6E-26 1.4E-30 187.7 30.2 277 113-512 15-300 (311)
92 PTZ00420 coronin; Provisional 100.0 4.2E-26 9E-31 216.0 33.1 241 229-499 70-319 (568)
93 KOG2048 WD40 repeat protein [G 100.0 3.5E-25 7.5E-30 200.9 37.2 249 35-371 25-276 (691)
94 KOG2096 WD40 repeat protein [G 100.0 1.3E-26 2.8E-31 191.5 23.2 291 31-368 82-400 (420)
95 KOG0264 Nucleosome remodeling 100.0 8.3E-27 1.8E-31 201.9 22.1 270 31-429 120-405 (422)
96 KOG0973 Histone transcription 100.0 1.9E-26 4.2E-31 220.4 26.5 252 230-512 66-352 (942)
97 KOG4283 Transcription-coupled 100.0 8.4E-26 1.8E-30 184.7 26.1 314 31-467 39-361 (397)
98 KOG0308 Conserved WD40 repeat- 100.0 4.9E-27 1.1E-31 211.7 20.3 296 32-467 18-323 (735)
99 KOG0640 mRNA cleavage stimulat 100.0 1.8E-26 3.8E-31 190.0 21.5 303 113-513 113-424 (430)
100 KOG0275 Conserved WD40 repeat- 100.0 3.7E-27 8.1E-32 195.1 16.6 283 113-512 214-506 (508)
101 KOG1539 WD repeat protein [Gen 100.0 3.2E-25 7E-30 205.6 31.1 380 38-513 162-604 (910)
102 KOG0274 Cdc4 and related F-box 100.0 4.8E-26 1E-30 214.9 26.1 278 34-434 207-488 (537)
103 PTZ00421 coronin; Provisional 100.0 3.9E-25 8.4E-30 208.7 32.1 207 229-467 71-286 (493)
104 KOG0278 Serine/threonine kinas 100.0 1E-26 2.2E-31 185.6 17.9 235 230-513 56-295 (334)
105 KOG1332 Vesicle coat complex C 100.0 1.3E-26 2.9E-31 184.3 18.5 261 30-429 6-287 (299)
106 KOG1332 Vesicle coat complex C 100.0 1.5E-26 3.3E-31 184.0 18.5 250 229-513 7-284 (299)
107 KOG0268 Sof1-like rRNA process 100.0 4.6E-27 1E-31 197.4 16.2 284 92-514 58-344 (433)
108 KOG2919 Guanine nucleotide-bin 100.0 1.8E-25 4E-30 185.1 25.3 311 35-467 49-366 (406)
109 KOG0305 Anaphase promoting com 99.9 6.7E-26 1.5E-30 205.7 24.4 269 116-467 181-457 (484)
110 KOG1036 Mitotic spindle checkp 99.9 7.8E-25 1.7E-29 180.4 27.8 278 33-460 11-293 (323)
111 KOG0650 WD40 repeat nucleolar 99.9 1.2E-25 2.5E-30 201.0 24.8 325 21-467 386-731 (733)
112 KOG0289 mRNA splicing factor [ 99.9 2.8E-25 6.1E-30 191.0 25.0 242 229-512 257-502 (506)
113 KOG0641 WD40 repeat protein [G 99.9 5.1E-24 1.1E-28 167.7 29.9 250 230-513 86-347 (350)
114 KOG0294 WD40 repeat-containing 99.9 3.5E-25 7.5E-30 182.9 24.4 241 31-430 39-283 (362)
115 KOG0647 mRNA export protein (c 99.9 7.5E-25 1.6E-29 179.8 25.1 272 112-505 27-312 (347)
116 KOG2096 WD40 repeat protein [G 99.9 3.3E-25 7.1E-30 183.2 22.8 303 94-467 80-398 (420)
117 KOG2048 WD40 repeat protein [G 99.9 3.7E-23 8.1E-28 187.9 37.8 416 11-513 89-546 (691)
118 KOG0308 Conserved WD40 repeat- 99.9 3.5E-26 7.6E-31 206.2 17.6 267 199-500 41-311 (735)
119 KOG0299 U3 snoRNP-associated p 99.9 1.5E-24 3.2E-29 188.1 26.6 288 112-505 142-444 (479)
120 KOG2055 WD40 repeat protein [G 99.9 6.6E-25 1.4E-29 190.3 24.0 295 35-428 213-512 (514)
121 KOG0301 Phospholipase A2-activ 99.9 8.5E-25 1.9E-29 198.9 25.8 273 31-467 10-284 (745)
122 KOG0300 WD40 repeat-containing 99.9 2.2E-25 4.7E-30 184.2 19.8 297 90-513 138-474 (481)
123 KOG0288 WD40 repeat protein Ti 99.9 4.1E-26 8.8E-31 194.9 15.3 274 113-512 176-458 (459)
124 KOG0264 Nucleosome remodeling 99.9 8.1E-25 1.8E-29 189.7 21.3 268 102-467 114-400 (422)
125 KOG1273 WD40 repeat protein [G 99.9 3.5E-24 7.5E-29 177.0 23.9 289 33-467 22-318 (405)
126 KOG0639 Transducin-like enhanc 99.9 4E-25 8.7E-30 193.5 19.5 286 105-467 412-700 (705)
127 KOG0294 WD40 repeat-containing 99.9 1.5E-23 3.3E-28 173.2 27.2 270 49-467 3-277 (362)
128 KOG1036 Mitotic spindle checkp 99.9 2.5E-23 5.5E-28 171.6 27.2 267 113-506 14-294 (323)
129 KOG0269 WD40 repeat-containing 99.9 9.5E-25 2E-29 201.0 20.7 291 35-467 39-336 (839)
130 KOG0301 Phospholipase A2-activ 99.9 7.4E-24 1.6E-28 192.8 25.7 281 88-513 2-286 (745)
131 KOG0639 Transducin-like enhanc 99.9 2.1E-24 4.5E-29 189.1 19.5 287 31-427 415-703 (705)
132 KOG2445 Nuclear pore complex c 99.9 3.4E-23 7.5E-28 170.6 25.0 278 31-371 9-319 (361)
133 KOG2055 WD40 repeat protein [G 99.9 3.4E-23 7.5E-28 179.7 26.0 284 113-512 214-509 (514)
134 KOG0269 WD40 repeat-containing 99.9 7.8E-25 1.7E-29 201.5 16.7 246 37-430 89-342 (839)
135 KOG1274 WD40 repeat protein [G 99.9 7E-23 1.5E-27 192.4 28.9 277 32-459 10-288 (933)
136 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.9E-22 1.1E-26 181.8 33.6 293 47-451 1-300 (300)
137 KOG0274 Cdc4 and related F-box 99.9 1.9E-23 4E-28 197.5 23.9 265 113-467 209-478 (537)
138 KOG4328 WD40 protein [Function 99.9 5.6E-23 1.2E-27 178.3 23.4 300 31-467 182-491 (498)
139 KOG0302 Ribosome Assembly prot 99.9 7.2E-23 1.6E-27 173.3 21.4 218 230-513 208-436 (440)
140 KOG0646 WD40 repeat protein [G 99.9 5.3E-23 1.1E-27 178.9 20.7 237 32-384 78-320 (476)
141 KOG0267 Microtubule severing p 99.9 1.1E-24 2.5E-29 198.9 10.4 235 230-509 25-261 (825)
142 KOG4283 Transcription-coupled 99.9 3.9E-22 8.4E-27 163.4 22.6 305 113-512 44-362 (397)
143 KOG0302 Ribosome Assembly prot 99.9 2E-22 4.4E-27 170.5 21.3 268 31-426 147-436 (440)
144 KOG0650 WD40 repeat nucleolar 99.9 5.7E-22 1.2E-26 177.6 24.6 320 94-512 394-732 (733)
145 KOG4378 Nuclear protein COP1 [ 99.9 6.7E-22 1.4E-26 173.3 24.1 263 113-453 35-305 (673)
146 KOG0267 Microtubule severing p 99.9 4.2E-24 9.1E-29 195.3 10.3 193 230-464 67-261 (825)
147 KOG0321 WD40 repeat-containing 99.9 1.4E-21 3E-26 176.5 24.8 314 33-430 45-393 (720)
148 KOG1445 Tumor-specific antigen 99.9 5.3E-21 1.2E-25 172.7 27.3 197 284-505 629-832 (1012)
149 KOG2919 Guanine nucleotide-bin 99.9 1.5E-21 3.3E-26 162.1 21.3 288 176-510 54-364 (406)
150 KOG0646 WD40 repeat protein [G 99.9 2.3E-21 5E-26 168.8 23.4 233 233-501 81-334 (476)
151 KOG0321 WD40 repeat-containing 99.9 1.6E-21 3.5E-26 176.1 22.2 300 198-513 67-389 (720)
152 KOG1034 Transcriptional repres 99.9 1.9E-21 4.2E-26 161.8 20.7 318 33-467 36-379 (385)
153 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.9E-20 8.5E-25 169.2 31.9 269 127-469 2-277 (300)
154 KOG1445 Tumor-specific antigen 99.9 4.4E-21 9.6E-26 173.2 23.9 144 342-505 628-783 (1012)
155 KOG0307 Vesicle coat complex C 99.9 1.6E-22 3.5E-27 194.8 15.5 202 230-467 113-323 (1049)
156 KOG1188 WD40 repeat protein [G 99.9 2.5E-21 5.4E-26 162.0 20.3 286 48-467 41-342 (376)
157 KOG1009 Chromatin assembly com 99.9 3.8E-21 8.2E-26 164.6 21.4 334 35-467 13-368 (434)
158 KOG1009 Chromatin assembly com 99.9 8.9E-21 1.9E-25 162.3 23.4 307 113-510 14-366 (434)
159 KOG1963 WD40 repeat protein [G 99.9 9.2E-20 2E-24 171.3 31.6 409 40-514 21-537 (792)
160 KOG1274 WD40 repeat protein [G 99.9 2.2E-20 4.8E-25 175.9 26.0 239 230-514 10-261 (933)
161 KOG1273 WD40 repeat protein [G 99.9 3.8E-20 8.3E-25 153.2 23.9 281 115-513 26-320 (405)
162 KOG2445 Nuclear pore complex c 99.9 6.9E-20 1.5E-24 151.3 24.4 272 228-514 8-317 (361)
163 KOG4227 WD40 repeat protein [G 99.9 1.5E-19 3.1E-24 154.2 22.8 307 31-467 52-383 (609)
164 KOG0303 Actin-binding protein 99.9 1.7E-19 3.6E-24 154.0 22.7 298 18-453 10-321 (472)
165 KOG4328 WD40 protein [Function 99.9 8.3E-20 1.8E-24 158.8 20.4 251 230-513 183-448 (498)
166 KOG1538 Uncharacterized conser 99.9 1.4E-19 3E-24 164.6 22.7 270 37-467 14-289 (1081)
167 KOG0270 WD40 repeat-containing 99.9 7.1E-20 1.5E-24 158.6 19.8 266 38-432 176-453 (463)
168 KOG1007 WD repeat protein TSSC 99.9 1.7E-19 3.7E-24 147.6 20.4 256 229-511 59-356 (370)
169 KOG1034 Transcriptional repres 99.9 5.1E-20 1.1E-24 153.4 17.4 266 33-428 87-383 (385)
170 KOG0290 Conserved WD40 repeat- 99.9 9E-19 1.9E-23 143.6 23.8 208 230-512 147-362 (364)
171 KOG0307 Vesicle coat complex C 99.8 1.2E-20 2.6E-25 182.1 14.3 277 13-431 42-330 (1049)
172 KOG0649 WD40 repeat protein [G 99.8 4.6E-18 1E-22 135.9 25.0 299 36-467 11-312 (325)
173 KOG0270 WD40 repeat-containing 99.8 4.1E-19 9E-24 153.9 20.3 197 230-467 240-445 (463)
174 KOG1524 WD40 repeat-containing 99.8 3.8E-19 8.3E-24 157.7 20.3 205 247-512 77-282 (737)
175 KOG0322 G-protein beta subunit 99.8 4.8E-19 1E-23 143.2 19.1 300 33-427 12-322 (323)
176 KOG1517 Guanine nucleotide bin 99.8 1.8E-18 4E-23 165.3 25.9 310 37-430 1066-1383(1387)
177 KOG4378 Nuclear protein COP1 [ 99.8 3.1E-19 6.6E-24 156.8 18.5 287 14-410 14-305 (673)
178 KOG0642 Cell-cycle nuclear pro 99.8 3.1E-19 6.6E-24 159.4 17.3 273 31-431 290-564 (577)
179 KOG1007 WD repeat protein TSSC 99.8 3.2E-18 6.9E-23 140.3 20.9 229 206-467 94-357 (370)
180 COG2319 FOG: WD40 repeat [Gene 99.8 1E-15 2.2E-20 148.0 42.8 367 31-513 61-440 (466)
181 KOG0644 Uncharacterized conser 99.8 1.9E-19 4.1E-24 167.7 12.8 276 31-467 186-464 (1113)
182 KOG4227 WD40 repeat protein [G 99.8 6E-18 1.3E-22 144.5 19.6 299 113-513 57-385 (609)
183 KOG1524 WD40 repeat-containing 99.8 2.7E-17 5.8E-22 146.2 22.7 209 127-426 76-284 (737)
184 KOG4497 Uncharacterized conser 99.8 2.2E-17 4.7E-22 138.0 20.7 355 40-510 13-426 (447)
185 KOG1587 Cytoplasmic dynein int 99.8 2.2E-17 4.7E-22 155.2 23.0 287 13-370 223-516 (555)
186 KOG0642 Cell-cycle nuclear pro 99.8 3.9E-18 8.3E-23 152.5 16.4 258 113-467 295-557 (577)
187 KOG1334 WD40 repeat protein [G 99.8 4.1E-18 8.8E-23 149.6 16.2 304 31-467 138-462 (559)
188 PRK11028 6-phosphogluconolacto 99.8 2.6E-15 5.7E-20 138.5 35.5 206 236-467 82-300 (330)
189 KOG0322 G-protein beta subunit 99.8 1.8E-17 4E-22 134.1 16.0 291 113-467 15-319 (323)
190 KOG1587 Cytoplasmic dynein int 99.8 4.2E-16 9.1E-21 146.7 26.7 260 113-467 243-512 (555)
191 KOG0303 Actin-binding protein 99.8 8.5E-17 1.8E-21 137.7 19.8 211 31-371 77-295 (472)
192 PRK11028 6-phosphogluconolacto 99.8 1.4E-15 3E-20 140.3 29.8 274 199-513 6-302 (330)
193 KOG1538 Uncharacterized conser 99.8 1.6E-16 3.4E-21 145.0 22.3 230 229-510 49-287 (1081)
194 KOG2110 Uncharacterized conser 99.8 3.1E-15 6.7E-20 127.3 26.7 159 234-430 88-250 (391)
195 KOG1963 WD40 repeat protein [G 99.7 2.8E-15 6.1E-20 141.5 29.0 304 31-467 201-534 (792)
196 KOG1310 WD40 repeat protein [G 99.7 1.3E-16 2.9E-21 142.2 18.6 241 30-371 45-304 (758)
197 KOG1240 Protein kinase contain 99.7 7.4E-16 1.6E-20 150.1 25.0 289 85-430 1033-1336(1431)
198 KOG0771 Prolactin regulatory e 99.7 1.2E-16 2.5E-21 138.4 16.0 196 237-467 148-350 (398)
199 PRK01742 tolB translocation pr 99.7 5.7E-16 1.2E-20 147.2 22.5 168 238-452 252-426 (429)
200 KOG0290 Conserved WD40 repeat- 99.7 4.6E-16 1E-20 127.9 18.7 254 32-366 93-361 (364)
201 KOG1517 Guanine nucleotide bin 99.7 9E-16 1.9E-20 147.3 23.2 295 115-468 1067-1378(1387)
202 KOG0771 Prolactin regulatory e 99.7 7.3E-16 1.6E-20 133.5 20.6 192 286-511 148-350 (398)
203 KOG4497 Uncharacterized conser 99.7 4.6E-15 1E-19 124.3 22.7 320 35-464 48-425 (447)
204 COG2319 FOG: WD40 repeat [Gene 99.7 1.4E-13 3E-18 133.1 36.9 320 36-467 110-438 (466)
205 KOG1523 Actin-related protein 99.7 3.7E-15 7.9E-20 124.4 20.4 240 233-506 10-269 (361)
206 PRK01742 tolB translocation pr 99.7 1.5E-15 3.2E-20 144.3 19.8 231 204-498 183-427 (429)
207 KOG2139 WD40 repeat protein [G 99.7 4.4E-14 9.6E-19 120.0 25.6 256 36-419 99-366 (445)
208 KOG1188 WD40 repeat protein [G 99.7 3.7E-15 8E-20 125.5 19.0 266 30-428 65-346 (376)
209 KOG1240 Protein kinase contain 99.7 1E-14 2.3E-19 142.3 24.0 292 13-371 1030-1335(1431)
210 KOG1523 Actin-related protein 99.7 1.3E-14 2.9E-19 121.1 21.0 231 35-379 10-245 (361)
211 KOG0644 Uncharacterized conser 99.7 1.4E-16 3.1E-21 148.9 10.3 252 229-512 186-465 (1113)
212 KOG0649 WD40 repeat protein [G 99.7 7.6E-14 1.6E-18 112.1 22.3 247 176-467 15-270 (325)
213 KOG2139 WD40 repeat protein [G 99.6 5.1E-14 1.1E-18 119.6 20.7 244 234-507 99-366 (445)
214 KOG2111 Uncharacterized conser 99.6 1.6E-12 3.6E-17 108.8 29.3 162 233-430 94-258 (346)
215 KOG1272 WD40-repeat-containing 99.6 1.4E-15 3.1E-20 133.0 11.2 268 115-509 132-402 (545)
216 KOG2321 WD40 repeat protein [G 99.6 1.4E-13 3E-18 124.0 22.6 289 30-429 46-344 (703)
217 KOG2110 Uncharacterized conser 99.6 2.1E-13 4.6E-18 116.3 22.1 231 234-513 6-246 (391)
218 PRK03629 tolB translocation pr 99.6 9.4E-14 2E-18 131.7 22.4 216 231-497 196-428 (429)
219 PRK03629 tolB translocation pr 99.6 5.9E-13 1.3E-17 126.2 27.7 168 238-452 247-428 (429)
220 PF02239 Cytochrom_D1: Cytochr 99.6 6.3E-13 1.4E-17 122.1 25.4 329 48-474 6-350 (369)
221 KOG3881 Uncharacterized conser 99.6 1.8E-13 4E-18 117.5 20.2 224 245-499 115-344 (412)
222 PRK02889 tolB translocation pr 99.6 1.6E-13 3.5E-18 130.2 20.7 218 230-497 192-425 (427)
223 KOG1310 WD40 repeat protein [G 99.6 6.1E-14 1.3E-18 125.5 16.5 181 229-428 46-231 (758)
224 KOG2315 Predicted translation 99.6 1.1E-11 2.3E-16 112.0 30.4 312 35-467 34-380 (566)
225 PF08662 eIF2A: Eukaryotic tra 99.6 1.9E-13 4.1E-18 113.8 17.6 148 237-428 9-179 (194)
226 KOG1272 WD40-repeat-containing 99.6 3.9E-14 8.4E-19 124.2 13.2 265 3-370 89-362 (545)
227 KOG2394 WD40 protein DMR-N9 [G 99.6 6.6E-14 1.4E-18 125.0 14.6 189 242-451 182-384 (636)
228 KOG3881 Uncharacterized conser 99.6 4.9E-13 1.1E-17 115.0 19.3 183 236-452 151-342 (412)
229 PRK05137 tolB translocation pr 99.6 2.4E-12 5.1E-17 123.0 25.9 186 231-462 199-397 (435)
230 PRK04922 tolB translocation pr 99.6 7.1E-13 1.5E-17 126.4 22.1 215 230-496 200-432 (433)
231 KOG1334 WD40 repeat protein [G 99.5 1.9E-13 4.1E-18 120.7 14.2 296 113-513 143-464 (559)
232 COG2706 3-carboxymuconate cycl 99.5 1.8E-10 3.9E-15 99.0 31.8 211 237-467 92-317 (346)
233 KOG2321 WD40 repeat protein [G 99.5 2.3E-12 5E-17 116.3 20.9 290 106-467 45-339 (703)
234 PRK04922 tolB translocation pr 99.5 4E-12 8.7E-17 121.2 24.1 168 237-451 251-432 (433)
235 PRK02889 tolB translocation pr 99.5 6.6E-12 1.4E-16 119.3 25.0 172 236-452 242-425 (427)
236 COG2706 3-carboxymuconate cycl 99.5 2.1E-10 4.6E-15 98.6 31.2 289 15-429 19-322 (346)
237 PF02239 Cytochrom_D1: Cytochr 99.5 1.4E-11 3.1E-16 113.1 26.3 325 127-514 6-346 (369)
238 PRK05137 tolB translocation pr 99.5 1.8E-11 3.8E-16 117.0 27.9 169 235-451 247-432 (435)
239 PF10282 Lactonase: Lactonase, 99.5 1E-09 2.2E-14 101.3 36.8 274 34-428 35-322 (345)
240 KOG2394 WD40 protein DMR-N9 [G 99.5 2E-12 4.3E-17 115.8 17.5 237 236-496 126-384 (636)
241 PF08662 eIF2A: Eukaryotic tra 99.5 5.4E-12 1.2E-16 105.1 18.7 98 342-461 60-163 (194)
242 KOG1354 Serine/threonine prote 99.5 4.1E-12 8.8E-17 107.5 16.5 225 234-469 85-357 (433)
243 PF10282 Lactonase: Lactonase, 99.5 5.7E-10 1.2E-14 103.0 32.3 291 129-467 2-318 (345)
244 TIGR02800 propeller_TolB tol-p 99.5 1.3E-11 2.7E-16 118.3 21.8 185 233-463 189-386 (417)
245 COG5354 Uncharacterized protei 99.5 2.2E-10 4.8E-15 102.3 27.1 342 34-505 31-418 (561)
246 KOG2041 WD40 repeat protein [G 99.4 4.3E-11 9.4E-16 111.1 21.2 304 31-467 10-333 (1189)
247 KOG2314 Translation initiation 99.4 8E-11 1.7E-15 106.1 21.3 314 38-467 213-563 (698)
248 TIGR02800 propeller_TolB tol-p 99.4 3.5E-10 7.6E-15 108.4 26.8 148 236-428 236-397 (417)
249 KOG2111 Uncharacterized conser 99.4 2.3E-10 5.1E-15 96.1 21.7 232 235-513 7-254 (346)
250 PRK04792 tolB translocation pr 99.4 4.6E-10 1E-14 107.1 26.1 167 238-451 266-446 (448)
251 PRK04792 tolB translocation pr 99.4 9.6E-11 2.1E-15 111.7 20.9 215 231-497 215-447 (448)
252 KOG0974 WD-repeat protein WDR6 99.4 4.6E-11 9.9E-16 115.7 17.6 149 239-429 139-289 (967)
253 PRK00178 tolB translocation pr 99.3 3.5E-10 7.7E-15 108.4 23.4 215 230-497 195-428 (430)
254 PRK00178 tolB translocation pr 99.3 1.3E-09 2.7E-14 104.6 27.0 167 238-451 247-427 (430)
255 PF04762 IKI3: IKI3 family; I 99.3 1.6E-07 3.5E-12 96.5 40.0 383 35-467 120-560 (928)
256 KOG4547 WD40 repeat-containing 99.3 1.4E-09 3.1E-14 99.2 21.3 146 244-429 69-221 (541)
257 KOG0280 Uncharacterized conser 99.3 9E-10 1.9E-14 91.7 18.3 210 113-371 70-285 (339)
258 KOG4547 WD40 repeat-containing 99.3 8.7E-10 1.9E-14 100.6 19.7 115 230-371 99-221 (541)
259 PRK01029 tolB translocation pr 99.3 1.6E-09 3.4E-14 102.5 22.5 221 232-498 183-426 (428)
260 PF04762 IKI3: IKI3 family; I 99.3 1.8E-07 3.9E-12 96.1 38.3 349 34-462 74-507 (928)
261 KOG2041 WD40 repeat protein [G 99.3 1.8E-09 3.9E-14 100.6 21.4 249 229-511 67-333 (1189)
262 KOG0974 WD-repeat protein WDR6 99.2 5.6E-10 1.2E-14 108.3 18.7 196 282-512 87-285 (967)
263 KOG1409 Uncharacterized conser 99.2 5.3E-10 1.2E-14 95.0 16.2 209 31-316 64-273 (404)
264 COG5170 CDC55 Serine/threonine 99.2 2.4E-10 5.3E-15 95.7 13.7 223 234-467 86-363 (460)
265 COG5354 Uncharacterized protei 99.2 1.7E-08 3.6E-13 90.7 24.2 311 36-464 72-422 (561)
266 KOG2315 Predicted translation 99.2 7.1E-09 1.5E-13 94.1 22.1 129 253-428 250-390 (566)
267 COG4946 Uncharacterized protei 99.2 1.1E-07 2.4E-12 84.8 28.6 144 231-417 357-507 (668)
268 COG4946 Uncharacterized protei 99.2 2.3E-07 4.9E-12 82.9 30.5 142 282-459 359-506 (668)
269 KOG2314 Translation initiation 99.2 2E-08 4.4E-13 91.1 24.0 286 31-428 246-573 (698)
270 TIGR02658 TTQ_MADH_Hv methylam 99.2 2.4E-07 5.2E-12 83.4 30.7 255 123-433 54-335 (352)
271 KOG0309 Conserved WD40 repeat- 99.2 4.1E-10 8.9E-15 105.1 12.6 288 33-467 22-335 (1081)
272 PRK01029 tolB translocation pr 99.2 2.8E-08 6.1E-13 94.1 25.2 204 113-371 185-404 (428)
273 KOG0280 Uncharacterized conser 99.2 3.3E-09 7.2E-14 88.4 16.1 223 199-460 89-320 (339)
274 TIGR02658 TTQ_MADH_Hv methylam 99.1 9.7E-08 2.1E-12 85.9 26.4 254 43-379 53-338 (352)
275 KOG1912 WD40 repeat protein [G 99.1 2.8E-08 6.1E-13 93.8 22.9 406 33-505 53-540 (1062)
276 PLN02919 haloacid dehalogenase 99.1 3.6E-07 7.9E-12 95.8 31.6 227 234-468 624-885 (1057)
277 PLN02919 haloacid dehalogenase 99.1 3.9E-07 8.4E-12 95.6 31.5 188 236-431 685-891 (1057)
278 KOG1064 RAVE (regulator of V-A 99.0 4.3E-09 9.3E-14 107.9 13.7 194 32-317 2205-2402(2439)
279 KOG4532 WD40-like repeat conta 99.0 2.2E-07 4.9E-12 76.7 21.1 242 127-430 85-333 (344)
280 KOG1409 Uncharacterized conser 99.0 2.6E-08 5.6E-13 85.0 16.2 195 234-467 69-266 (404)
281 KOG4190 Uncharacterized conser 99.0 6.9E-09 1.5E-13 94.0 12.0 247 224-507 776-1027(1034)
282 TIGR03300 assembly_YfgL outer 99.0 9.7E-07 2.1E-11 83.3 27.0 306 46-467 64-375 (377)
283 PRK04043 tolB translocation pr 99.0 2.1E-07 4.5E-12 87.6 21.7 180 235-462 189-388 (419)
284 KOG4532 WD40-like repeat conta 99.0 2.4E-07 5.2E-12 76.5 18.9 231 245-513 84-329 (344)
285 PRK04043 tolB translocation pr 98.9 5.2E-07 1.1E-11 85.0 24.0 177 284-505 189-386 (419)
286 KOG4190 Uncharacterized conser 98.9 1.3E-08 2.8E-13 92.3 11.4 294 30-467 730-1032(1034)
287 KOG1064 RAVE (regulator of V-A 98.9 2.7E-08 5.8E-13 102.3 14.8 185 230-467 2205-2394(2439)
288 PF15492 Nbas_N: Neuroblastoma 98.9 1.4E-06 3E-11 73.2 22.2 186 231-430 41-261 (282)
289 KOG0309 Conserved WD40 repeat- 98.9 1.8E-08 4E-13 94.4 11.8 184 235-454 69-258 (1081)
290 KOG0882 Cyclophilin-related pe 98.9 1.9E-07 4E-12 82.8 16.1 327 32-425 6-369 (558)
291 KOG3914 WD repeat protein WDR4 98.9 6.4E-08 1.4E-12 84.5 13.1 159 236-433 65-228 (390)
292 PF15492 Nbas_N: Neuroblastoma 98.8 1.8E-05 4E-10 66.7 24.3 229 239-513 3-257 (282)
293 KOG4714 Nucleoporin [Nuclear s 98.7 4.5E-07 9.8E-12 74.6 14.1 143 199-371 105-255 (319)
294 PF08450 SGL: SMP-30/Gluconola 98.7 5.1E-05 1.1E-09 66.8 28.1 145 234-415 86-242 (246)
295 TIGR03300 assembly_YfgL outer 98.7 1.2E-05 2.6E-10 75.9 25.0 267 126-468 65-335 (377)
296 PF08450 SGL: SMP-30/Gluconola 98.7 9.3E-05 2E-09 65.1 29.0 183 236-456 42-240 (246)
297 KOG2695 WD40 repeat protein [G 98.7 1.1E-07 2.4E-12 81.4 9.4 155 245-437 225-384 (425)
298 KOG1912 WD40 repeat protein [G 98.7 3.8E-06 8.2E-11 79.9 20.1 258 34-429 14-305 (1062)
299 KOG1832 HIV-1 Vpr-binding prot 98.7 3.3E-08 7.1E-13 94.8 6.1 219 31-415 1097-1318(1516)
300 KOG4714 Nucleoporin [Nuclear s 98.7 7.2E-07 1.6E-11 73.5 12.7 74 234-314 180-255 (319)
301 KOG3914 WD repeat protein WDR4 98.6 7.3E-07 1.6E-11 78.1 12.6 150 286-467 66-219 (390)
302 PF00400 WD40: WD domain, G-be 98.6 7.4E-08 1.6E-12 56.8 4.6 33 31-63 7-39 (39)
303 KOG0882 Cyclophilin-related pe 98.6 1.7E-06 3.7E-11 76.9 14.2 243 230-513 50-303 (558)
304 PF07433 DUF1513: Protein of u 98.6 7.9E-05 1.7E-09 65.0 23.9 254 36-365 5-280 (305)
305 PF13360 PQQ_2: PQQ-like domai 98.6 9.3E-05 2E-09 64.9 25.2 155 247-432 78-234 (238)
306 PF07433 DUF1513: Protein of u 98.6 2.9E-05 6.3E-10 67.6 20.4 202 283-513 5-245 (305)
307 KOG1920 IkappaB kinase complex 98.5 1.6E-05 3.5E-10 79.7 21.1 239 234-513 69-320 (1265)
308 KOG2695 WD40 repeat protein [G 98.5 8.9E-07 1.9E-11 75.9 8.8 135 232-383 251-388 (425)
309 PF08596 Lgl_C: Lethal giant l 98.4 0.00013 2.7E-09 67.9 21.8 281 37-370 3-335 (395)
310 KOG1920 IkappaB kinase complex 98.4 0.00067 1.4E-08 68.8 27.6 240 36-371 69-323 (1265)
311 KOG2114 Vacuolar assembly/sort 98.4 0.00018 4E-09 69.8 22.7 117 233-371 125-244 (933)
312 PF00400 WD40: WD domain, G-be 98.4 1.9E-06 4.1E-11 50.7 6.2 37 92-142 3-39 (39)
313 PRK11138 outer membrane biogen 98.4 0.00095 2.1E-08 63.3 27.8 182 247-467 162-349 (394)
314 KOG2066 Vacuolar assembly/sort 98.3 1.8E-05 4E-10 75.9 14.6 193 32-314 36-234 (846)
315 PF11768 DUF3312: Protein of u 98.3 0.00033 7.2E-09 65.5 22.3 76 231-317 257-333 (545)
316 KOG2066 Vacuolar assembly/sort 98.3 5.9E-05 1.3E-09 72.5 17.3 178 197-428 51-233 (846)
317 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0022 4.9E-08 59.7 26.4 219 237-504 104-345 (353)
318 KOG3621 WD40 repeat-containing 98.2 0.00064 1.4E-08 64.8 20.9 169 33-316 31-200 (726)
319 KOG1645 RING-finger-containing 98.1 0.00045 9.7E-09 61.2 17.7 39 113-152 194-232 (463)
320 PRK11138 outer membrane biogen 98.1 0.0019 4.1E-08 61.3 24.0 136 245-427 257-393 (394)
321 KOG1008 Uncharacterized conser 98.1 1.2E-06 2.6E-11 81.4 2.1 193 198-429 73-276 (783)
322 PF06977 SdiA-regulated: SdiA- 98.1 0.0049 1.1E-07 53.2 23.4 128 232-367 116-247 (248)
323 KOG3617 WD40 and TPR repeat-co 98.1 0.00016 3.4E-09 70.1 15.5 110 116-264 19-133 (1416)
324 PF11768 DUF3312: Protein of u 98.1 5.9E-05 1.3E-09 70.4 12.2 83 26-147 250-332 (545)
325 COG0823 TolB Periplasmic compo 98.1 0.00012 2.6E-09 68.7 14.6 185 233-460 192-388 (425)
326 PF13360 PQQ_2: PQQ-like domai 98.0 0.0018 3.9E-08 56.7 21.0 144 252-433 1-145 (238)
327 PRK02888 nitrous-oxide reducta 98.0 0.0012 2.7E-08 63.5 19.9 101 343-460 322-450 (635)
328 KOG1645 RING-finger-containing 98.0 0.00047 1E-08 61.0 15.7 79 32-147 190-269 (463)
329 PF14655 RAB3GAP2_N: Rab3 GTPa 98.0 0.0083 1.8E-07 55.8 24.6 95 338-433 304-403 (415)
330 KOG1275 PAB-dependent poly(A) 98.0 0.00016 3.4E-09 70.7 13.8 180 296-513 148-340 (1118)
331 COG0823 TolB Periplasmic compo 98.0 0.00045 9.8E-09 65.0 16.5 185 282-505 192-388 (425)
332 PF04053 Coatomer_WDAD: Coatom 97.9 0.004 8.8E-08 58.9 22.1 165 233-452 32-207 (443)
333 KOG2114 Vacuolar assembly/sort 97.9 0.0024 5.3E-08 62.4 20.4 202 178-430 30-245 (933)
334 KOG3617 WD40 and TPR repeat-co 97.9 0.00027 5.9E-09 68.6 14.1 107 238-371 20-132 (1416)
335 KOG1008 Uncharacterized conser 97.9 2.7E-05 5.9E-10 72.8 6.8 210 113-371 57-276 (783)
336 PRK02888 nitrous-oxide reducta 97.9 0.012 2.5E-07 57.1 23.8 64 403-467 325-400 (635)
337 PF08596 Lgl_C: Lethal giant l 97.9 0.0069 1.5E-07 56.6 21.8 209 230-467 83-332 (395)
338 KOG1832 HIV-1 Vpr-binding prot 97.9 2.4E-05 5.1E-10 76.0 5.7 145 277-457 1096-1246(1516)
339 KOG1275 PAB-dependent poly(A) 97.8 0.00045 9.8E-09 67.7 14.0 177 245-467 147-338 (1118)
340 PF06977 SdiA-regulated: SdiA- 97.8 0.019 4.1E-07 49.7 24.0 177 234-425 65-247 (248)
341 PF04841 Vps16_N: Vps16, N-ter 97.8 0.018 4E-07 54.5 23.7 179 255-467 62-242 (410)
342 PF04841 Vps16_N: Vps16, N-ter 97.7 0.041 9E-07 52.1 27.4 56 401-457 219-275 (410)
343 KOG3621 WD40 repeat-containing 97.7 0.00019 4.2E-09 68.1 9.6 108 404-512 39-150 (726)
344 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.012 2.5E-07 54.9 21.4 278 35-415 42-344 (353)
345 PF08553 VID27: VID27 cytoplas 97.7 0.013 2.7E-07 59.0 21.2 144 296-467 494-644 (794)
346 KOG1897 Damage-specific DNA bi 97.7 0.085 1.8E-06 53.2 31.8 227 245-511 684-938 (1096)
347 PF04053 Coatomer_WDAD: Coatom 97.6 0.0068 1.5E-07 57.4 18.1 222 173-467 34-258 (443)
348 COG3490 Uncharacterized protei 97.6 0.01 2.2E-07 50.6 16.7 201 285-514 70-309 (366)
349 PF06433 Me-amine-dh_H: Methyl 97.6 0.022 4.7E-07 50.9 19.5 266 36-382 36-331 (342)
350 PF08553 VID27: VID27 cytoplas 97.6 0.0089 1.9E-07 60.1 19.1 101 249-370 546-647 (794)
351 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.026 5.6E-07 47.5 18.2 110 290-433 18-128 (354)
352 COG3391 Uncharacterized conser 97.5 0.045 9.8E-07 51.5 22.6 193 236-471 76-283 (381)
353 PF06433 Me-amine-dh_H: Methyl 97.5 0.059 1.3E-06 48.2 25.0 258 123-433 44-325 (342)
354 cd00216 PQQ_DH Dehydrogenases 97.5 0.11 2.4E-06 50.7 25.6 25 409-433 405-429 (488)
355 smart00320 WD40 WD40 repeats. 97.4 0.00034 7.4E-09 40.4 4.1 31 33-63 10-40 (40)
356 PF14583 Pectate_lyase22: Olig 97.3 0.14 3.1E-06 46.8 22.2 167 233-428 187-381 (386)
357 COG3386 Gluconolactonase [Carb 97.2 0.14 3.1E-06 46.0 21.9 222 239-505 30-274 (307)
358 PF05694 SBP56: 56kDa selenium 97.2 0.024 5.1E-07 52.1 15.6 137 235-379 182-351 (461)
359 KOG2395 Protein involved in va 97.2 0.018 3.9E-07 53.5 14.6 141 297-467 348-497 (644)
360 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0016 3.4E-08 39.4 5.4 33 33-65 9-41 (47)
361 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.051 1.1E-06 39.7 14.4 64 234-309 43-110 (111)
362 PF03178 CPSF_A: CPSF A subuni 97.1 0.21 4.5E-06 46.0 24.0 178 254-467 2-198 (321)
363 PF14583 Pectate_lyase22: Olig 97.1 0.22 4.7E-06 45.6 24.9 78 281-371 186-273 (386)
364 KOG4640 Anaphase-promoting com 97.1 0.0037 8E-08 59.1 9.1 76 234-319 21-98 (665)
365 PRK13616 lipoprotein LpqB; Pro 97.0 0.018 3.9E-07 56.9 14.0 143 343-512 351-522 (591)
366 KOG4640 Anaphase-promoting com 97.0 0.004 8.7E-08 58.8 8.8 93 342-450 21-114 (665)
367 PF00780 CNH: CNH domain; Int 96.9 0.28 6.2E-06 43.9 24.0 228 243-513 5-253 (275)
368 PF03178 CPSF_A: CPSF A subuni 96.9 0.34 7.3E-06 44.6 24.5 115 232-370 87-202 (321)
369 PF10647 Gmad1: Lipoprotein Lp 96.9 0.091 2E-06 46.1 16.2 144 343-507 25-186 (253)
370 COG3386 Gluconolactonase [Carb 96.8 0.34 7.4E-06 43.6 20.0 99 341-456 162-270 (307)
371 KOG2395 Protein involved in va 96.8 0.042 9.2E-07 51.2 13.7 100 250-370 399-500 (644)
372 smart00320 WD40 WD40 repeats. 96.8 0.0043 9.4E-08 35.4 5.3 28 113-142 13-40 (40)
373 COG3490 Uncharacterized protei 96.8 0.25 5.3E-06 42.6 16.8 142 344-503 70-242 (366)
374 PRK13616 lipoprotein LpqB; Pro 96.7 0.2 4.4E-06 49.7 18.6 202 234-467 350-564 (591)
375 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0067 1.5E-07 36.6 5.1 31 112-144 11-41 (47)
376 KOG2079 Vacuolar assembly/sort 96.7 0.011 2.5E-07 59.5 9.5 102 296-427 100-202 (1206)
377 COG3204 Uncharacterized protei 96.6 0.45 9.7E-06 41.4 21.1 219 113-425 86-309 (316)
378 PF00780 CNH: CNH domain; Int 96.5 0.6 1.3E-05 41.8 24.5 152 124-317 5-169 (275)
379 PF14783 BBS2_Mid: Ciliary BBS 96.4 0.23 5E-06 36.3 12.5 67 285-370 2-71 (111)
380 cd00216 PQQ_DH Dehydrogenases 96.3 1.2 2.6E-05 43.7 30.1 28 127-154 111-138 (488)
381 PF07995 GSDH: Glucose / Sorbo 96.1 1.1 2.5E-05 41.2 19.8 58 409-466 270-330 (331)
382 PF02897 Peptidase_S9_N: Proly 96.1 1.5 3.2E-05 42.1 22.3 194 236-467 126-351 (414)
383 PF12234 Rav1p_C: RAVE protein 95.7 0.3 6.5E-06 48.1 13.8 109 404-513 35-154 (631)
384 PF02897 Peptidase_S9_N: Proly 95.7 2.1 4.5E-05 41.1 27.4 34 36-69 124-162 (414)
385 PF10647 Gmad1: Lipoprotein Lp 95.7 1.4 3E-05 38.8 19.3 155 235-420 25-187 (253)
386 COG3391 Uncharacterized conser 95.6 2 4.4E-05 40.5 24.4 158 235-430 117-285 (381)
387 PF12234 Rav1p_C: RAVE protein 95.6 0.51 1.1E-05 46.6 14.7 114 238-370 34-156 (631)
388 PF15390 DUF4613: Domain of un 95.6 2.4 5.3E-05 40.9 24.6 156 113-303 57-221 (671)
389 KOG4499 Ca2+-binding protein R 95.5 1.2 2.6E-05 37.3 14.6 135 233-385 108-255 (310)
390 KOG2079 Vacuolar assembly/sort 95.5 0.36 7.8E-06 49.4 13.5 105 244-371 98-204 (1206)
391 PF14870 PSII_BNR: Photosynthe 95.2 2.3 4.9E-05 38.3 27.6 237 233-510 16-256 (302)
392 PF10214 Rrn6: RNA polymerase 95.2 4.9 0.00011 42.0 22.5 75 234-315 204-278 (765)
393 KOG4649 PQQ (pyrrolo-quinoline 95.1 1.9 4.2E-05 36.8 26.1 64 241-313 101-165 (354)
394 PF10313 DUF2415: Uncharacteri 95.0 0.11 2.4E-06 30.4 5.0 33 283-315 1-35 (43)
395 KOG1897 Damage-specific DNA bi 94.9 5.3 0.00012 41.2 30.4 103 396-505 772-887 (1096)
396 KOG2444 WD40 repeat protein [G 94.9 0.093 2E-06 43.5 6.3 143 247-430 33-179 (238)
397 PF10168 Nup88: Nuclear pore c 94.9 0.77 1.7E-05 46.7 14.0 33 395-428 81-113 (717)
398 PF10168 Nup88: Nuclear pore c 94.7 6 0.00013 40.5 24.3 84 234-317 85-183 (717)
399 TIGR02604 Piru_Ver_Nterm putat 94.6 2.3 5E-05 39.9 15.8 155 283-462 14-204 (367)
400 PF05694 SBP56: 56kDa selenium 94.5 4.1 8.9E-05 38.1 19.3 234 244-505 86-392 (461)
401 PF08728 CRT10: CRT10; InterP 94.5 4 8.7E-05 41.1 17.4 120 236-369 103-245 (717)
402 PF10313 DUF2415: Uncharacteri 94.4 0.14 3.1E-06 29.9 4.5 29 343-371 2-34 (43)
403 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.2 6.4 0.00014 39.0 28.0 27 292-318 310-338 (527)
404 PF08728 CRT10: CRT10; InterP 94.1 6.7 0.00014 39.6 17.8 166 245-427 49-245 (717)
405 KOG3630 Nuclear pore complex, 94.0 0.41 9E-06 49.4 9.7 152 234-415 101-260 (1405)
406 PF14870 PSII_BNR: Photosynthe 93.8 4.8 0.0001 36.2 25.4 151 342-512 145-301 (302)
407 KOG1916 Nuclear protein, conta 93.5 0.096 2.1E-06 52.3 4.3 114 204-328 152-281 (1283)
408 KOG2280 Vacuolar assembly/sort 93.4 9.3 0.0002 38.3 19.5 51 401-452 219-270 (829)
409 COG3204 Uncharacterized protei 93.4 5.1 0.00011 35.2 20.6 176 231-428 83-263 (316)
410 KOG2444 WD40 repeat protein [G 93.4 0.36 7.7E-06 40.2 6.8 65 245-317 70-136 (238)
411 TIGR02604 Piru_Ver_Nterm putat 93.2 5.1 0.00011 37.7 15.4 113 234-358 14-140 (367)
412 KOG4460 Nuclear pore complex, 93.2 1.8 3.9E-05 41.0 11.6 89 399-513 104-196 (741)
413 PLN00033 photosystem II stabil 93.2 7.8 0.00017 36.6 17.1 148 343-512 240-396 (398)
414 COG5167 VID27 Protein involved 93.0 8.7 0.00019 36.6 16.6 99 252-371 535-633 (776)
415 COG4590 ABC-type uncharacteriz 92.9 0.82 1.8E-05 42.3 9.0 158 341-513 220-384 (733)
416 PF07569 Hira: TUP1-like enhan 92.8 0.91 2E-05 38.8 8.9 79 290-371 18-96 (219)
417 PF13449 Phytase-like: Esteras 92.7 8.1 0.00018 35.6 16.9 168 282-459 19-232 (326)
418 TIGR03606 non_repeat_PQQ dehyd 92.1 12 0.00025 36.0 19.3 59 234-293 30-89 (454)
419 PF07995 GSDH: Glucose / Sorbo 92.1 3.5 7.6E-05 38.0 12.4 57 235-293 3-59 (331)
420 PF14761 HPS3_N: Hermansky-Pud 92.0 2.3 5.1E-05 35.5 9.8 102 411-513 29-161 (215)
421 KOG4441 Proteins containing BT 92.0 15 0.00032 36.9 19.0 57 409-467 475-537 (571)
422 PF14655 RAB3GAP2_N: Rab3 GTPa 91.8 2.4 5.1E-05 40.0 10.9 37 33-69 305-341 (415)
423 PF03022 MRJP: Major royal jel 91.8 9.4 0.0002 34.3 19.1 192 255-458 35-252 (287)
424 PF15390 DUF4613: Domain of un 91.8 8.5 0.00018 37.4 14.3 108 342-459 57-173 (671)
425 KOG2377 Uncharacterized conser 91.8 7.9 0.00017 36.2 13.6 129 236-383 25-153 (657)
426 KOG3630 Nuclear pore complex, 91.3 4.8 0.0001 42.2 12.9 153 342-504 101-261 (1405)
427 KOG4659 Uncharacterized conser 91.0 23 0.0005 38.1 17.3 21 339-359 530-550 (1899)
428 KOG2377 Uncharacterized conser 90.6 6.8 0.00015 36.6 12.0 103 342-460 67-172 (657)
429 PF14727 PHTB1_N: PTHB1 N-term 90.5 16 0.00035 34.7 28.7 60 412-474 302-364 (418)
430 PF13449 Phytase-like: Esteras 90.5 14 0.00031 34.0 17.8 168 234-415 20-231 (326)
431 PF12657 TFIIIC_delta: Transcr 90.4 7.4 0.00016 31.9 11.5 33 113-145 86-122 (173)
432 COG4590 ABC-type uncharacteriz 90.4 12 0.00026 35.1 13.4 169 230-432 217-390 (733)
433 PF07569 Hira: TUP1-like enhan 90.0 1.8 4E-05 36.9 7.9 71 241-314 18-96 (219)
434 PHA02713 hypothetical protein; 89.6 13 0.00028 37.3 14.6 23 293-316 512-536 (557)
435 PRK10115 protease 2; Provision 89.3 4 8.6E-05 42.0 11.0 100 343-460 128-241 (686)
436 PF05096 Glu_cyclase_2: Glutam 88.9 15 0.00033 32.1 19.9 194 35-301 44-249 (264)
437 PRK13684 Ycf48-like protein; P 88.8 19 0.00042 33.2 27.0 153 342-513 173-329 (334)
438 PHA02713 hypothetical protein; 88.7 18 0.00039 36.3 14.8 54 409-464 463-524 (557)
439 PF12657 TFIIIC_delta: Transcr 88.4 5.1 0.00011 32.8 9.1 30 400-429 87-122 (173)
440 COG5167 VID27 Protein involved 88.2 15 0.00031 35.2 12.5 137 352-511 478-628 (776)
441 PRK13684 Ycf48-like protein; P 88.1 22 0.00048 32.9 25.9 104 402-509 176-282 (334)
442 PLN00033 photosystem II stabil 87.7 26 0.00055 33.3 17.5 155 236-425 241-396 (398)
443 KOG4499 Ca2+-binding protein R 86.5 19 0.00041 30.6 14.0 96 343-450 159-262 (310)
444 PF10214 Rrn6: RNA polymerase 86.5 47 0.001 35.0 23.7 139 232-371 78-233 (765)
445 COG3823 Glutamine cyclotransfe 85.6 20 0.00043 29.9 12.6 25 46-70 55-81 (262)
446 PF14781 BBS2_N: Ciliary BBSom 85.4 15 0.00032 28.2 12.7 113 239-370 4-125 (136)
447 TIGR03075 PQQ_enz_alc_DH PQQ-d 85.0 43 0.00094 33.3 30.3 24 128-151 122-145 (527)
448 KOG2247 WD40 repeat-containing 84.4 0.23 5E-06 46.2 -0.7 134 176-358 39-176 (615)
449 PRK10115 protease 2; Provision 84.2 56 0.0012 33.9 26.3 111 235-370 128-255 (686)
450 PF07676 PD40: WD40-like Beta 83.6 3.9 8.4E-05 23.3 4.5 29 34-62 7-38 (39)
451 KOG1900 Nuclear pore complex, 83.4 30 0.00065 37.4 13.3 161 250-429 95-273 (1311)
452 TIGR02276 beta_rpt_yvtn 40-res 83.1 6.2 0.00013 22.8 5.4 31 351-382 1-33 (42)
453 KOG1900 Nuclear pore complex, 82.1 13 0.00028 40.0 10.2 79 233-314 178-273 (1311)
454 KOG2247 WD40 repeat-containing 82.1 0.24 5.1E-06 46.1 -1.6 144 284-464 36-181 (615)
455 PF05096 Glu_cyclase_2: Glutam 82.0 35 0.00076 30.0 19.5 114 283-431 45-160 (264)
456 PF07250 Glyoxal_oxid_N: Glyox 81.2 31 0.00067 30.0 10.8 113 344-466 69-194 (243)
457 COG4257 Vgb Streptogramin lyas 81.0 38 0.00082 29.7 18.8 187 234-457 104-291 (353)
458 KOG4441 Proteins containing BT 80.8 66 0.0014 32.4 20.8 25 44-68 282-312 (571)
459 KOG4460 Nuclear pore complex, 80.7 54 0.0012 31.7 12.7 83 234-316 104-201 (741)
460 PF14781 BBS2_N: Ciliary BBSom 80.4 24 0.00052 27.1 12.0 70 288-371 4-82 (136)
461 KOG1898 Splicing factor 3b, su 80.2 86 0.0019 33.3 23.6 33 34-66 581-619 (1205)
462 PHA03098 kelch-like protein; P 80.0 68 0.0015 32.1 15.3 26 408-433 436-469 (534)
463 PF08801 Nucleoporin_N: Nup133 79.3 46 0.00099 32.1 12.8 30 401-430 192-221 (422)
464 PF07676 PD40: WD40-like Beta 78.5 8.3 0.00018 21.9 4.7 30 281-310 7-38 (39)
465 PF14727 PHTB1_N: PTHB1 N-term 78.4 64 0.0014 30.8 22.5 149 292-467 34-200 (418)
466 PF11715 Nup160: Nucleoporin N 76.8 16 0.00034 36.7 9.1 31 125-155 229-259 (547)
467 PF03022 MRJP: Major royal jel 76.0 60 0.0013 29.3 17.0 31 283-314 186-216 (287)
468 TIGR03606 non_repeat_PQQ dehyd 75.8 80 0.0017 30.6 13.9 61 283-353 30-90 (454)
469 PF12341 DUF3639: Protein of u 75.3 7.8 0.00017 20.1 3.4 26 36-63 2-27 (27)
470 PF11715 Nup160: Nucleoporin N 75.2 13 0.00028 37.3 8.0 34 283-317 215-252 (547)
471 PF02333 Phytase: Phytase; In 74.2 78 0.0017 29.7 19.1 113 198-314 174-291 (381)
472 PF01436 NHL: NHL repeat; Int 73.4 11 0.00024 19.6 4.1 25 38-62 4-28 (28)
473 PF14761 HPS3_N: Hermansky-Pud 73.1 56 0.0012 27.6 19.0 76 233-312 134-213 (215)
474 PRK13615 lipoprotein LpqB; Pro 72.9 1.1E+02 0.0023 30.7 14.1 138 345-504 337-487 (557)
475 KOG3616 Selective LIM binding 72.6 80 0.0017 32.1 12.0 31 234-264 15-46 (1636)
476 KOG1916 Nuclear protein, conta 72.2 2.6 5.6E-05 42.8 2.2 107 11-144 152-265 (1283)
477 KOG2280 Vacuolar assembly/sort 71.9 1.2E+02 0.0026 31.0 18.3 174 254-467 64-242 (829)
478 PF02333 Phytase: Phytase; In 71.9 89 0.0019 29.3 23.1 152 254-430 127-292 (381)
479 COG5276 Uncharacterized conser 71.8 73 0.0016 28.4 16.8 143 282-460 86-232 (370)
480 COG5276 Uncharacterized conser 71.5 75 0.0016 28.3 14.7 144 343-507 88-234 (370)
481 PF11725 AvrE: Pathogenicity f 69.0 2.1E+02 0.0046 32.5 16.7 80 234-316 438-519 (1774)
482 KOG1983 Tomosyn and related SN 67.0 89 0.0019 33.9 12.1 34 35-68 35-68 (993)
483 PHA03098 kelch-like protein; P 66.2 1.5E+02 0.0032 29.7 17.8 24 409-432 487-515 (534)
484 PF07250 Glyoxal_oxid_N: Glyox 65.8 92 0.002 27.2 10.8 124 286-430 70-199 (243)
485 COG4257 Vgb Streptogramin lyas 65.6 97 0.0021 27.4 21.0 238 122-430 69-307 (353)
486 TIGR02171 Fb_sc_TIGR02171 Fibr 64.4 50 0.0011 34.6 9.2 54 401-454 352-411 (912)
487 PF11635 Med16: Mediator compl 64.0 2E+02 0.0043 30.4 21.8 32 401-432 262-293 (753)
488 PRK13613 lipoprotein LpqB; Pro 63.8 1.7E+02 0.0038 29.7 14.2 153 343-514 364-536 (599)
489 COG5290 IkappaB kinase complex 62.9 99 0.0021 31.8 10.5 30 35-64 112-141 (1243)
490 COG3823 Glutamine cyclotransfe 62.3 95 0.0021 26.2 13.8 67 244-318 55-124 (262)
491 TIGR03118 PEPCTERM_chp_1 conse 62.0 1.2E+02 0.0027 27.3 20.3 221 176-433 27-284 (336)
492 TIGR03118 PEPCTERM_chp_1 conse 61.9 1.2E+02 0.0027 27.3 20.2 216 235-468 24-276 (336)
493 PF03088 Str_synth: Strictosid 61.7 23 0.00051 25.0 4.7 44 301-361 33-76 (89)
494 PF01731 Arylesterase: Arylest 60.1 29 0.00063 24.4 4.9 49 362-429 36-85 (86)
495 PF11725 AvrE: Pathogenicity f 59.0 3.3E+02 0.0071 31.2 19.0 63 402-467 706-768 (1774)
496 PF14269 Arylsulfotran_2: Aryl 58.6 1.4E+02 0.0031 27.0 13.2 75 343-428 145-220 (299)
497 smart00564 PQQ beta-propeller 56.9 29 0.00063 18.5 4.0 23 128-150 8-30 (33)
498 KOG1898 Splicing factor 3b, su 54.8 3.1E+02 0.0066 29.6 16.9 109 239-370 939-1048(1205)
499 PF13570 PQQ_3: PQQ-like domai 52.5 26 0.00057 20.0 3.3 21 409-429 20-40 (40)
500 TIGR02608 delta_60_rpt delta-6 52.1 58 0.0013 20.5 4.9 29 37-65 2-35 (55)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-53 Score=358.49 Aligned_cols=324 Identities=15% Similarity=0.283 Sum_probs=276.2
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.++|.|++|+|+|..||+|+.|.++|+||+.+.. ...+.++|.
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT-----------------------p~~t~KgH~---------- 157 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET-----------------------PLFTCKGHK---------- 157 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC-----------------------cceeecCCc----------
Confidence 45899999999999999999999999999999998776 346789998
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.|++| +|||+.|++|+.||+|++||.++++.. |+
T Consensus 158 --~WVlcvaw--sPDgk~iASG~~dg~I~lwdpktg~~~---------------------------------g~------ 194 (480)
T KOG0271|consen 158 --NWVLCVAW--SPDGKKIASGSKDGSIRLWDPKTGQQI---------------------------------GR------ 194 (480)
T ss_pred --cEEEEEEE--CCCcchhhccccCCeEEEecCCCCCcc---------------------------------cc------
Confidence 99999999 678999999999999999999887521 11
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-----CCCEEEEe-cCCeEEEEeccCC
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-----DGETFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~s~-~d~~i~iwd~~~~ 264 (514)
.+.+|+..|++++|.| ..++|+++ .||.|+|||+..+
T Consensus 195 -------------------------------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~ 237 (480)
T KOG0271|consen 195 -------------------------------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG 237 (480)
T ss_pred -------------------------------------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc
Confidence 1379999999999976 46789998 8999999999854
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
.... .+.+|..+|+|+.|--+| ++++|+.|++|++|+...|.++ + .+++|...|
T Consensus 238 ~~~~--------~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~----r------------~lkGHahwv 291 (480)
T KOG0271|consen 238 TCVR--------TLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLC----R------------ELKGHAHWV 291 (480)
T ss_pred eEEE--------EeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHH----H------------hhcccchhe
Confidence 4433 578999999999998776 9999999999999999988874 2 256666788
Q ss_pred eEEEEe-----------cCC-------------------------CEEEEEeC-CeEEEEEccCCCCceeeeeecccccc
Q 010256 345 SDIKFA-----------RNG-------------------------RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP 387 (514)
Q Consensus 345 ~~~~~s-----------~~g-------------------------~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (514)
+.++.+ |.+ ..|++|+| .++.+|+-....+++..+.+|+..++
T Consensus 292 N~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn 371 (480)
T KOG0271|consen 292 NHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVN 371 (480)
T ss_pred eeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhee
Confidence 888876 223 34999877 99999998876779999999998754
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+.||||+++||+++.|..|++|+..+|+. +.++++|-.+|+.++|+.|.++|++||.|.++++
T Consensus 372 ---------------~V~fSPd~r~IASaSFDkSVkLW~g~tGk~-lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKv 435 (480)
T KOG0271|consen 372 ---------------HVSFSPDGRYIASASFDKSVKLWDGRTGKF-LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKV 435 (480)
T ss_pred ---------------eEEECCCccEEEEeecccceeeeeCCCcch-hhhhhhccceeEEEEeccCccEEEEcCCCceEEE
Confidence 899999999999999999999999999955 4899999999999999999999999999999999
Q ss_pred eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEE-EE
Q 010256 468 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY-MY 512 (514)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~-i~ 512 (514)
|+.....+..+..+|.++|.+++|+|||..++.|+.|.++ +|
T Consensus 436 ---w~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 436 ---WDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred ---EEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence 3333333445666799999999999999999988866554 44
No 2
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-53 Score=350.36 Aligned_cols=428 Identities=63% Similarity=1.002 Sum_probs=363.2
Q ss_pred ccccccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccc
Q 010256 11 AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (514)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (514)
+.....|+|.|.|+.. +...+.|++|.|+.+|.+||||+.+|+|.++....... .++
T Consensus 6 ~~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------------------~ey 62 (433)
T KOG1354|consen 6 KNEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------------------GEY 62 (433)
T ss_pred cchhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeecccccc------------------cce
Confidence 4567889999988854 56778999999999999999999999999998653321 378
Q ss_pred eeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecc
Q 010256 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (514)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (514)
++..+++.|+|+|+|+++++++++|+.++|++..+...++..+.|++|++|.+....... ...+...
T Consensus 63 ~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~-~~~~~~~------------ 129 (433)
T KOG1354|consen 63 NFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKK-EGYNLPE------------ 129 (433)
T ss_pred eeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccc-ccccccc------------
Confidence 899999999999999999999999999999998888899999999999999998765332 1111000
Q ss_pred cccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEE
Q 010256 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 250 (514)
. ...+.-.++++.. +...+......|++.+..+|+-.|++++++.|.+.+++
T Consensus 130 -----------~----------------~~~~~~~~lr~p~-~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS 181 (433)
T KOG1354|consen 130 -----------E----------------GPPGTITSLRLPV-EGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS 181 (433)
T ss_pred -----------c----------------CCCCccceeecee-eccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence 0 0112223455554 55666677788999999999999999999999999999
Q ss_pred ecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 251 ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 251 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
++|-.|.+|.++-..+.+.+++++|..++.....|++..|+|..+++|+..+..|+|++-|+|...+|+.+.+.|+.+++
T Consensus 182 ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 182 ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (514)
|..+.++.+....|..+.|+++|+|+++.+.-+|++||+....+++.+++.|.....++|.+|++++|++.+.++|+.++
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 99999999999999999999999999999989999999988899999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceE
Q 010256 411 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLL 490 (514)
Q Consensus 411 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~ 490 (514)
.+++||+..+.+++|++..|.....+++........-.. .....++. +.+-...++.+..+++...|+
T Consensus 342 ~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~--~k~~~V~~----------~g~r~~~~~~vd~ldf~kkil 409 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV--LKLRLVSS----------SGKRKRDEISVDALDFRKKIL 409 (433)
T ss_pred ceEecccccceEEEecCCCCcceeecccccccCCccccc--ccceeeec----------CCCccccccccchhhhhhHHH
Confidence 999999999999999988887766666655544211111 11111221 222223466677888999999
Q ss_pred EEEEcCCCCEEEEEecCcEEEEeC
Q 010256 491 HLAWHPSENSIACAASNSLYMYYA 514 (514)
Q Consensus 491 ~~~~spd~~~l~~~~~~~~~i~~~ 514 (514)
+.+|||..+.||+++.++++||++
T Consensus 410 h~aWhp~en~ia~aatnnlyif~~ 433 (433)
T KOG1354|consen 410 HTAWHPKENSIAVAATNNLYIFQD 433 (433)
T ss_pred hhccCCccceeeeeecCceEEecC
Confidence 999999999999999999999985
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-46 Score=312.74 Aligned_cols=299 Identities=16% Similarity=0.263 Sum_probs=253.4
Q ss_pred cccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceee
Q 010256 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (514)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (514)
-+-|+... +.....-.+|...|.|++|+|||+.||+|+.||+|++||.++++. +-
T Consensus 139 vR~WD~~T---eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~----------------------~g 193 (480)
T KOG0271|consen 139 VRLWDLDT---ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ----------------------IG 193 (480)
T ss_pred EEeeccCC---CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc----------------------cc
Confidence 35588766 233334568999999999999999999999999999999988876 34
Q ss_pred eeeccCCCccccccccccccceeEEEEee---CCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecc
Q 010256 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQ---SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (514)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~i~~~~---~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (514)
..+.+|. ..|++++|.| .+..++|++++.||.|+|||+..+.+...
T Consensus 194 ~~l~gH~------------K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~------------------- 242 (480)
T KOG0271|consen 194 RALRGHK------------KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT------------------- 242 (480)
T ss_pred ccccCcc------------cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE-------------------
Confidence 5688998 8999999977 45667899999999999999987754321
Q ss_pred cccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEE
Q 010256 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 250 (514)
+.+|+.+|+|+.|.-+| +|++
T Consensus 243 ----------------------------------------------------------lsgHT~~VTCvrwGG~g-liyS 263 (480)
T KOG0271|consen 243 ----------------------------------------------------------LSGHTASVTCVRWGGEG-LIYS 263 (480)
T ss_pred ----------------------------------------------------------eccCccceEEEEEcCCc-eEEe
Confidence 37899999999998776 7888
Q ss_pred e-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEe-----------cCC------------------------
Q 010256 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-----------PTH------------------------ 294 (514)
Q Consensus 251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~-----------p~~------------------------ 294 (514)
| .|++|++|+...+..+. .+.+|...|+.++.+ |.+
T Consensus 264 gS~DrtIkvw~a~dG~~~r--------~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~ 335 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCR--------ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS 335 (480)
T ss_pred cCCCceEEEEEccchhHHH--------hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence 8 99999999998655442 678999999988876 223
Q ss_pred CcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCC
Q 010256 295 CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDS 373 (514)
Q Consensus 295 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~ 373 (514)
+..+++|+.|.++.+|+....+.+ .....+|..-|+.+.||||++++|+++- ..|++||.++ +
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkp---------------i~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-G 399 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKP---------------ITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT-G 399 (480)
T ss_pred cceeEEecCCceEEEecccccccc---------------hhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC-c
Confidence 125999999999999997654422 1225678889999999999999999985 9999999998 9
Q ss_pred CceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCC
Q 010256 374 GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR 453 (514)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (514)
+.+.++.+|-.. |+.++|+.|.++|++|+.|.++++|++++. ++...|.+|.+.|.++.|+|||
T Consensus 400 k~lasfRGHv~~---------------VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DLpGh~DEVf~vDwspDG 463 (480)
T KOG0271|consen 400 KFLASFRGHVAA---------------VYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQDLPGHADEVFAVDWSPDG 463 (480)
T ss_pred chhhhhhhccce---------------eEEEEeccCccEEEEcCCCceEEEEEeeee-eecccCCCCCceEEEEEecCCC
Confidence 999999999876 449999999999999999999999999975 6668899999999999999999
Q ss_pred CceeecCCCCeEEE
Q 010256 454 PSRPLGSLSGVVRR 467 (514)
Q Consensus 454 ~~l~s~s~d~~v~i 467 (514)
+.+++|+.|+.+++
T Consensus 464 ~rV~sggkdkv~~l 477 (480)
T KOG0271|consen 464 QRVASGGKDKVLRL 477 (480)
T ss_pred ceeecCCCceEEEe
Confidence 99999999999998
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.8e-47 Score=320.89 Aligned_cols=283 Identities=21% Similarity=0.326 Sum_probs=252.7
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.++...+|..+.||+|++.||||+.+|.+++|+..+.. ...+|.||.
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-----------------------~~~~l~gH~---------- 217 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-----------------------LLQTLRGHT---------- 217 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-----------------------eeEEEeccc----------
Confidence 46778999999999999999999999999999986553 668899999
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|.++.|+|..++..+++|+.||++++|++.+.....
T Consensus 218 --~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~---------------------------------------- 255 (459)
T KOG0272|consen 218 --SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ---------------------------------------- 255 (459)
T ss_pred --cceeeEEEccCCCccceeeeccCCceeeeccCCCcchh----------------------------------------
Confidence 88999999986556789999999999999987643111
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
. +.+|...|..++|+|+|++|+++ .|.+-++||+++.....
T Consensus 256 ------------------------------------~-l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL- 297 (459)
T KOG0272|consen 256 ------------------------------------D-LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL- 297 (459)
T ss_pred ------------------------------------h-hhcchhhheeeeecCCCceeeecccccchhhcccccchhhH-
Confidence 1 37888999999999999999999 89999999999877654
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
..++|...|.+++|+||| .++++|+.|..-+|||+|++..+ -++.+|...|.+|+|
T Consensus 298 -------~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~i----------------m~L~gH~k~I~~V~f 353 (459)
T KOG0272|consen 298 -------LQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCI----------------MFLAGHIKEILSVAF 353 (459)
T ss_pred -------hhcccccccceeEecCCC-ceeeccCccchhheeecccCcEE----------------EEecccccceeeEeE
Confidence 468999999999999999 89999999999999999999873 346778899999999
Q ss_pred ecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC-CCCEEEEEeCCCcEEEEec
Q 010256 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 350 s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~ 427 (514)
+|+|..|++|+ |++++|||++. .+++.++..|...+. .++|+| .|.+|+|++.|++++||..
T Consensus 354 sPNGy~lATgs~Dnt~kVWDLR~-r~~ly~ipAH~nlVS---------------~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 354 SPNGYHLATGSSDNTCKVWDLRM-RSELYTIPAHSNLVS---------------QVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred CCCceEEeecCCCCcEEEeeecc-cccceecccccchhh---------------heEecccCCeEEEEcccCcceeeecC
Confidence 99999999975 59999999998 888999999998754 899998 7889999999999999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+..+ .+.+.||.+.|-++.+++++.++++++.|+++++
T Consensus 418 ~~~~~-~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 418 RTWSP-LKSLAGHEGKVISLDISPDSQAIATSSFDRTIKL 456 (459)
T ss_pred CCccc-chhhcCCccceEEEEeccCCceEEEeccCceeee
Confidence 88744 4899999999999999999999999999999998
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.5e-42 Score=301.07 Aligned_cols=429 Identities=16% Similarity=0.184 Sum_probs=306.6
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCc-ccCCcccccccccccccCCccceeeeeeccCCCcc------
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTR-DNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEF------ 103 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~------ 103 (514)
+.+|...++-..|||.|.|+|+|...|.|||||....+ ......+.+.+....++|.++.+.+.....-...|
T Consensus 55 YtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~ 134 (603)
T KOG0318|consen 55 YTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLW 134 (603)
T ss_pred eccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEe
Confidence 56899999999999999999999999999999986633 22122234445555778888766554311100000
Q ss_pred cccccc----ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceee
Q 010256 104 DYLKSL----EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY 179 (514)
Q Consensus 104 ~~~~~~----~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 179 (514)
+.=.++ .+...|+++.|-|+.+ -+++++++|++|.+|+=...+.......+ ...|. ++.|
T Consensus 135 DSG~SvGei~GhSr~ins~~~KpsRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~H--------skFV~-------~VRy 198 (603)
T KOG0318|consen 135 DSGNSVGEITGHSRRINSVDFKPSRP-FRIATGSDDNTVAFFEGPPFKFKSSFREH--------SKFVN-------CVRY 198 (603)
T ss_pred cCCCccceeeccceeEeeeeccCCCc-eEEEeccCCCeEEEeeCCCeeeeeccccc--------cccee-------eEEE
Confidence 000000 2238899999977665 47899999999999987666655544444 23344 8899
Q ss_pred ccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccc--cccCccCeEEEEECCCCCEEEEe-cCCeE
Q 010256 180 MANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY--AHAHDYHINSISNNSDGETFISA-DDLRI 256 (514)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~-~d~~i 256 (514)
+|||..+ ++.+.||.+.+|| =.+.+. ...+ ..+|++.|.+++|+||++.++++ .|.++
T Consensus 199 sPDG~~F------------at~gsDgki~iyD-Gktge~------vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~ 259 (603)
T KOG0318|consen 199 SPDGSRF------------ATAGSDGKIYIYD-GKTGEK------VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTI 259 (603)
T ss_pred CCCCCeE------------EEecCCccEEEEc-CCCccE------EEEecCCCCccccEEEEEECCCCceEEEecCCceE
Confidence 9999998 9999999999999 322222 2121 25899999999999999999999 99999
Q ss_pred EEEeccCCCceeee-------------------------------ec---c-CCCcccccCCceEEEEEecCCCcEEEEE
Q 010256 257 NLWNLEISNQSFNI-------------------------------VD---V-KPANMEDLTEVITSAEFHPTHCNMLAYS 301 (514)
Q Consensus 257 ~iwd~~~~~~~~~~-------------------------------~~---~-~~~~~~~~~~~i~~v~~~p~~~~~l~~~ 301 (514)
+|||+.+.+....+ ++ . .+..+.+|...|+++..+|++ ..|++|
T Consensus 260 KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~Sg 338 (603)
T KOG0318|consen 260 KIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIYSG 338 (603)
T ss_pred EEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEEEee
Confidence 99999865322111 00 0 124567899999999999999 999999
Q ss_pred ecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCC---------
Q 010256 302 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMD--------- 372 (514)
Q Consensus 302 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~--------- 372 (514)
+.||.|.-||..++... + + .-.+|...|.+++.+..+.++.+|-|.++++.++...
T Consensus 339 syDG~I~~W~~~~g~~~----~-~----------~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~ 403 (603)
T KOG0318|consen 339 SYDGHINSWDSGSGTSD----R-L----------AGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVK 403 (603)
T ss_pred ccCceEEEEecCCcccc----c-c----------ccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceee
Confidence 99999999999887642 0 0 0145778899999988788888887789999877431
Q ss_pred --CCceeeeeeccc----------c--ccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCc-eeeeee
Q 010256 373 --SGPVATFQVHEH----------L--RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS-AESTTL 437 (514)
Q Consensus 373 --~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~ 437 (514)
.+|...-....+ . ..........+..+...+++++|++.+++.|+.||.|+||.+..+. +....+
T Consensus 404 lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~ 483 (603)
T KOG0318|consen 404 LGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL 483 (603)
T ss_pred cCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee
Confidence 111110000000 0 0000111112223345689999999999999999999999998754 333678
Q ss_pred cCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccc-cccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 438 EASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD-FSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 438 ~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
..|..+++.++++||+.|||++...+.+-+++-.. .+....... |...|++++|+|+.+++|+|+ +..++||.
T Consensus 484 ~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s---~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 484 LEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVAS---REVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred ecccCCceEEEECCCCcEEEEeccCCcEEEEEccc---CceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence 89999999999999999999999999999932221 112222223 899999999999999999999 77888886
No 6
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=7.2e-45 Score=298.02 Aligned_cols=440 Identities=50% Similarity=0.768 Sum_probs=348.8
Q ss_pred cccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceee
Q 010256 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (514)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (514)
...|+|.|+||++.........+.|+++.|...|.||++|...|+|.+|...... .=++++.
T Consensus 5 n~~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~------------------~ceykf~ 66 (460)
T COG5170 5 NEILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSY------------------GCEYKFF 66 (460)
T ss_pred hhhhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeeccccc------------------ccchhhh
Confidence 3569999999999999999999999999999999999999999999999965433 1267889
Q ss_pred eeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccccc
Q 010256 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (514)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (514)
.+|++|+++|+|++++++++.|+.|.|+.......++..+.|++|++|.+....++.+.+-+....
T Consensus 67 teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~-------------- 132 (460)
T COG5170 67 TEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDS-------------- 132 (460)
T ss_pred hhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccc--------------
Confidence 999999999999999999999999999866666688899999999999998876554443332211
Q ss_pred CCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecC
Q 010256 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADD 253 (514)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d 253 (514)
+ -+|-+..+ .....+++.. +..........+.+.+...|.-.|+++.|+.|.+.+++++|
T Consensus 133 ---~-~~~~~g~~---------------~s~~~l~lpr-ls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDd 192 (460)
T COG5170 133 ---F-HSPMGGPL---------------TSTKELLLPR-LSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADD 192 (460)
T ss_pred ---c-ccccCCCc---------------CCHHHhhccc-ccccceEEEeccceeccccceeEeeeeeecCchheeeeccc
Confidence 0 11111111 0112233332 23333333345566666889999999999999999999999
Q ss_pred CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCc
Q 010256 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (514)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 333 (514)
-.|.+|+++.....+.+++++|..++.....|++..|+|..++.|...+..|.|++-|+|...+|....+.++...++..
T Consensus 193 LrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~ 272 (460)
T COG5170 193 LRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVD 272 (460)
T ss_pred eeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCccc
Confidence 99999999999999999999999998888999999999998899999999999999999999998887888888777777
Q ss_pred cceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEE
Q 010256 334 RSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (514)
Q Consensus 334 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (514)
..++.+....|..+.|+++|+++++.+.-+|+|||++....++.++..|......++++|++++|++.+.+.||.|.+.+
T Consensus 273 ~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v 352 (460)
T COG5170 273 VDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHV 352 (460)
T ss_pred chhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccc
Confidence 78888888999999999999999999889999999999889999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEecCCCcee----eeeecCCCcc---eeEEE--------ECCCCCceeecCCCCeEEEeeCCCCCcccc
Q 010256 414 ATGSYSNLFRVFGCSEGSAE----STTLEASKNP---MRRQV--------QTPSRPSRPLGSLSGVVRRVKGADNSALDA 478 (514)
Q Consensus 414 ~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~---v~~~~--------~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~ 478 (514)
++|+..+...+|-..+.... ...+..+..+ +.+.. ...+.....+.+.+|.+.. +..
T Consensus 353 ~sgsy~NNfgiyp~~ssg~~D~g~vv~~ad~~a~~~~~k~~~nnv~kkd~~kn~~~rs~ss~a~g~~~~--~eD------ 424 (460)
T COG5170 353 LSGSYSNNFGIYPTDSSGFKDVGHVVNLADGSAEDFKVKCETNNVEKKDKLKNNDWRSVSSSADGFVVA--CED------ 424 (460)
T ss_pred cccccccceeeeccccCCCCcceEEEecccCCcccccCcccccccccccccccccccccccccCcceee--ccC------
Confidence 99999999999885443211 1122222111 11110 1112222445555555554 111
Q ss_pred CCcccccccceEEEEEcCCCCEEEEEecCcEEEEeC
Q 010256 479 NGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 514 (514)
Q Consensus 479 ~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~~ 514 (514)
.+.++....|.+..|+|-...+|++..+.+++|++
T Consensus 425 -~d~ld~~k~ilh~sWhp~e~svaiaatnnlfvfs~ 459 (460)
T COG5170 425 -PDNLDLLKKILHRSWHPFEDSVAIAATNNLFVFSK 459 (460)
T ss_pred -cchhHHHHHHHhhccCCcccceeeeecCceEEEec
Confidence 23445678899999999999999999999999975
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-42 Score=294.36 Aligned_cols=276 Identities=17% Similarity=0.229 Sum_probs=236.9
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
.+|..+.| +.++..|+||+.+|.+++|+..+......
T Consensus 176 rPis~~~f--S~ds~~laT~swsG~~kvW~~~~~~~~~~----------------------------------------- 212 (459)
T KOG0272|consen 176 RPISGCSF--SRDSKHLATGSWSGLVKVWSVPQCNLLQT----------------------------------------- 212 (459)
T ss_pred CcceeeEe--ecCCCeEEEeecCCceeEeecCCcceeEE-----------------------------------------
Confidence 67888888 56778999999999999999876532221
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCCCceee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+.+|...|.++.|+|. +..+++| .||++++|++++....
T Consensus 213 ------------------------------------l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l-- 254 (459)
T KOG0272|consen 213 ------------------------------------LRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL-- 254 (459)
T ss_pred ------------------------------------EeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch--
Confidence 3789999999999997 6789999 9999999999865443
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
..+++|...|..++|+|+| ++|++++.|.+-++||++++.... ...||...|.+++|
T Consensus 255 ------~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL----------------~QEGHs~~v~~iaf 311 (459)
T KOG0272|consen 255 ------QDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELL----------------LQEGHSKGVFSIAF 311 (459)
T ss_pred ------hhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhH----------------hhcccccccceeEe
Confidence 2678999999999999999 999999999999999999987631 13577889999999
Q ss_pred ecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
.|||.++++|+ |..-+|||+++ ++++..+.+|... |++++|+|+|..||||+.|++++|||++
T Consensus 312 ~~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~gH~k~---------------I~~V~fsPNGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 312 QPDGSLAATGGLDSLGRVWDLRT-GRCIMFLAGHIKE---------------ILSVAFSPNGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred cCCCceeeccCccchhheeeccc-CcEEEEecccccc---------------eeeEeECCCceEEeecCCCCcEEEeeec
Confidence 99999999976 58889999998 9999999998765 4599999999999999999999999999
Q ss_pred CCceeeeeecCCCcceeEEEECC-CCCceeecCCCCeEEEe--eCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 429 EGSAESTTLEASKNPMRRQVQTP-SRPSRPLGSLSGVVRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~v~i~--~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
... ...++.+|.+-|+.+.|+| .|.+|+|+|.|++++++ .++.+. ....+|.+.|.+++.+||+.+|++++
T Consensus 376 ~r~-~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~-----ksLaGHe~kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 376 MRS-ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL-----KSLAGHEGKVISLDISPDSQAIATSS 449 (459)
T ss_pred ccc-cceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccc-----hhhcCCccceEEEEeccCCceEEEec
Confidence 764 4588999999999999998 88999999999999992 334333 34456999999999999999999888
Q ss_pred -cCcEEEEeC
Q 010256 506 -SNSLYMYYA 514 (514)
Q Consensus 506 -~~~~~i~~~ 514 (514)
+..+.+|+.
T Consensus 450 ~DRT~KLW~~ 459 (459)
T KOG0272|consen 450 FDRTIKLWRP 459 (459)
T ss_pred cCceeeeccC
Confidence 888888863
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.3e-40 Score=269.01 Aligned_cols=293 Identities=16% Similarity=0.229 Sum_probs=245.9
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
..+.++||. .+|.++.| ++|.+++++++.||.+.|||.-+..-...++++ +..|.
T Consensus 47 ~rr~LkGH~------------~Ki~~~~w--s~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~--------s~WVM--- 101 (343)
T KOG0286|consen 47 TRRTLKGHL------------NKIYAMDW--STDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP--------SSWVM--- 101 (343)
T ss_pred eEEEecccc------------cceeeeEe--cCCcCeEEeeccCCeEEEEEcccccceeEEecC--------ceeEE---
Confidence 346799998 99999999 678889999999999999998877666666655 45565
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 251 (514)
..+|+|.|+.+ +.|+-|+...||+ +...+........+. +.+|.+.+.+..|-+|+++|.+.
T Consensus 102 ----tCA~sPSg~~V------------AcGGLdN~Csiy~-ls~~d~~g~~~v~r~-l~gHtgylScC~f~dD~~ilT~S 163 (343)
T KOG0286|consen 102 ----TCAYSPSGNFV------------ACGGLDNKCSIYP-LSTRDAEGNVRVSRE-LAGHTGYLSCCRFLDDNHILTGS 163 (343)
T ss_pred ----EEEECCCCCeE------------EecCcCceeEEEe-cccccccccceeeee-ecCccceeEEEEEcCCCceEecC
Confidence 88999999998 9999999999999 554432222222333 48999999999999866544444
Q ss_pred cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEec-CCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
.|.++.+||++++++.. .+.+|.+.|.+++++| ++ +.|++|+-|+..+|||+|.+.. .++
T Consensus 164 GD~TCalWDie~g~~~~--------~f~GH~gDV~slsl~p~~~-ntFvSg~cD~~aklWD~R~~~c----~qt------ 224 (343)
T KOG0286|consen 164 GDMTCALWDIETGQQTQ--------VFHGHTGDVMSLSLSPSDG-NTFVSGGCDKSAKLWDVRSGQC----VQT------ 224 (343)
T ss_pred CCceEEEEEcccceEEE--------EecCCcccEEEEecCCCCC-CeEEecccccceeeeeccCcce----eEe------
Confidence 99999999999877654 5789999999999999 65 9999999999999999999876 333
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
|.+|.+.|+++.|.|+|.-+++|+| ++.++||++. .+.+..+.... .+.+|++++||..
T Consensus 225 ------F~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa-D~~~a~ys~~~-------------~~~gitSv~FS~S 284 (343)
T KOG0286|consen 225 ------FEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA-DQELAVYSHDS-------------IICGITSVAFSKS 284 (343)
T ss_pred ------ecccccccceEEEccCCCeeeecCCCceeEEEeecC-CcEEeeeccCc-------------ccCCceeEEEccc
Confidence 5666789999999999999999987 9999999997 77777765322 2345679999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 410 GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 410 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|++|++|..|..+.+||.-.+ .....|.+|...|..+..+|||--+++||+|.++||
T Consensus 285 GRlLfagy~d~~c~vWDtlk~-e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lri 341 (343)
T KOG0286|consen 285 GRLLFAGYDDFTCNVWDTLKG-ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRI 341 (343)
T ss_pred ccEEEeeecCCceeEeecccc-ceEEEeeccCCeeEEEEECCCCcEEEecchhHheee
Confidence 999999999999999998876 445899999999999999999999999999999998
No 9
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-40 Score=300.95 Aligned_cols=416 Identities=14% Similarity=0.156 Sum_probs=311.2
Q ss_pred cccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceee
Q 010256 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (514)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (514)
++.|.+.. +.....-...|..+|.-++|+|.|..||+|+.||.+++||+..+. ..
T Consensus 86 lrv~~L~t--gk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~-----------------------~t 140 (775)
T KOG0319|consen 86 LRVWSLPT--GKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY-----------------------CT 140 (775)
T ss_pred EEEEEccc--chHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE-----------------------EE
Confidence 34455554 222222345699999999999999999999999999999998665 55
Q ss_pred eeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEE-EEEeeccCCCccccCCcceecccc
Q 010256 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHV 172 (514)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~ 172 (514)
..|+||. +.|.++.|.|..+...|++|..|+++++||+..+.. ......+. +.+.
T Consensus 141 h~fkG~g------------GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~--------S~vt---- 196 (775)
T KOG0319|consen 141 HSFKGHG------------GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHK--------SAVT---- 196 (775)
T ss_pred EEecCCC------------ceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhh--------hhee----
Confidence 7899998 899999999988877889999999999999986543 22222221 1222
Q ss_pred cCCceeeccCCCcccccc----------------------------------CCCCCCcccCCCCCCcEEeceeeccccc
Q 010256 173 SAIPKSYMANGGCGERNF----------------------------------GCASNDSSFPPGGVSSLRLPVVVTSQET 218 (514)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~----------------------------------~~~~~~~~~~~~~~~~i~i~~~~~~~~~ 218 (514)
++.+++|+..+.... -.....++++.+++|.++.||. .+...
T Consensus 197 ---sL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~-es~~~ 272 (775)
T KOG0319|consen 197 ---SLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDS-ESGKC 272 (775)
T ss_pred ---eeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEec-ccchh
Confidence 555555544331110 0111357777888888888873 21100
Q ss_pred c-----c---cc--------------------------------------------------------------------
Q 010256 219 N-----L---VA-------------------------------------------------------------------- 222 (514)
Q Consensus 219 ~-----~---~~-------------------------------------------------------------------- 222 (514)
. . ..
T Consensus 273 ~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~ 352 (775)
T KOG0319|consen 273 VYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYT 352 (775)
T ss_pred hhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEe
Confidence 0 0 00
Q ss_pred --cccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEE
Q 010256 223 --GCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA 299 (514)
Q Consensus 223 --~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~ 299 (514)
..-.....+|+..|.++....+|-+|++| .|.++++|.++.+...... -....+|.+.|.+++++..+..+|+
T Consensus 353 ~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~----~a~~~gH~~svgava~~~~~asffv 428 (775)
T KOG0319|consen 353 LPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLC----VAQANGHTNSVGAVAGSKLGASFFV 428 (775)
T ss_pred cCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhh----hhhhcccccccceeeecccCccEEE
Confidence 00011236788888888866778899999 8999999988533222111 1245789999999999888888999
Q ss_pred EEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceee
Q 010256 300 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVAT 378 (514)
Q Consensus 300 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~ 378 (514)
+++.|+++++|++...+.... ...+. .+.....|...|++++++|+.+++++|+. .+.+||++.. ...+.+
T Consensus 429 svS~D~tlK~W~l~~s~~~~~-~~~~~------~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~~v 500 (775)
T KOG0319|consen 429 SVSQDCTLKLWDLPKSKETAF-PIVLT------CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLLGV 500 (775)
T ss_pred EecCCceEEEecCCCcccccc-cceeh------hhHHHHhhcccccceEecCCCceEEecccccceeeecccC-ceEEEE
Confidence 999999999999987332111 11111 11223568889999999999999999875 9999999995 899999
Q ss_pred eeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceee
Q 010256 379 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 458 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 458 (514)
+.+|... |+++.|+|..+.++|+|.|++|+||.+.+..++ ++++||...|....|-.+++.|+|
T Consensus 501 LsGH~RG---------------vw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl-kT~eGH~~aVlra~F~~~~~qliS 564 (775)
T KOG0319|consen 501 LSGHTRG---------------VWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL-KTFEGHTSAVLRASFIRNGKQLIS 564 (775)
T ss_pred eeCCccc---------------eEEEEeccccceeEeccCCceEEEEEeccceee-eeecCccceeEeeeeeeCCcEEEe
Confidence 9999854 679999999999999999999999999998776 899999999999999999999999
Q ss_pred cCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 459 GSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 459 ~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
++.||-+++ |.....+-....-.|.+.|.+++-+|.+.++++|+.|+.++|.
T Consensus 565 ~~adGliKl---Wnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 565 AGADGLIKL---WNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred ccCCCcEEE---EeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence 999999999 5444333444445699999999999999999999877766653
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-38 Score=289.70 Aligned_cols=384 Identities=16% Similarity=0.235 Sum_probs=291.9
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|-+.|+++.|+.|.++|++|+.|-.++||.++..+.. ....+.+|.
T Consensus 141 ~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~---------------------~~~~l~gHk---------- 189 (893)
T KOG0291|consen 141 YLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL---------------------FTYALNGHK---------- 189 (893)
T ss_pred ecCCccceeEEEeccCCceEEeccccceEEEEEecccccc---------------------ceEeccCCC----------
Confidence 5689999999999999999999999999999999866532 445688998
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCcc--EEEEE---------eeccCCCccc--------cCCcceeccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK--KVKKV---------FDWNVHPEKA--------AGNGPIFGSH 171 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~--~~~~~---------~~~~~~~~~~--------~~~~~v~~~~ 171 (514)
+.|...-| ..+...+++.+.||.+.+|..... ..... .......+.. ..........
T Consensus 190 --d~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~ 265 (893)
T KOG0291|consen 190 --DYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNS 265 (893)
T ss_pred --cceEEEEe--ccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccc
Confidence 88888888 566668999999999999987621 00000 0000000000 0000000001
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 251 (514)
+...+.+|.+.-+.+ +++-..|...+|. +..... ... +.-...+|..++|+..|.+|+.|
T Consensus 266 ~kvtaa~fH~~t~~l------------vvgFssG~f~Lye-lP~f~l------ih~-LSis~~~I~t~~~N~tGDWiA~g 325 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLL------------VVGFSSGEFGLYE-LPDFNL------IHS-LSISDQKILTVSFNSTGDWIAFG 325 (893)
T ss_pred cceeeeeccCCceEE------------EEEecCCeeEEEe-cCCceE------EEE-eecccceeeEEEecccCCEEEEc
Confidence 122244455555555 8888999998888 333222 222 13344679999999999999998
Q ss_pred --cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccC
Q 010256 252 --DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (514)
Q Consensus 252 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 329 (514)
.=|.+-+|+.+...-.. ..++|...+++++++||| +++++|+.||.|++||...+-+.
T Consensus 326 ~~klgQLlVweWqsEsYVl--------KQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~----------- 385 (893)
T KOG0291|consen 326 CSKLGQLLVWEWQSESYVL--------KQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCF----------- 385 (893)
T ss_pred CCccceEEEEEeeccceee--------eccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEE-----------
Confidence 46899999998544332 468899999999999999 89999999999999999988763
Q ss_pred CCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC
Q 010256 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (514)
Q Consensus 330 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (514)
.+|..|++.|+.+.|+..|+.+++.+ ||+|+.||+.. .+..+++..+.... ..+++..|
T Consensus 386 -----vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-YrNfRTft~P~p~Q--------------fscvavD~ 445 (893)
T KOG0291|consen 386 -----VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-YRNFRTFTSPEPIQ--------------FSCVAVDP 445 (893)
T ss_pred -----EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc-cceeeeecCCCcee--------------eeEEEEcC
Confidence 23667789999999999999999976 69999999997 88888888766432 22789999
Q ss_pred CCCEEEEEeCCC-cEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccccccc
Q 010256 409 DGGRVATGSYSN-LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSM 487 (514)
Q Consensus 409 ~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~ 487 (514)
.|.++++|+.|. .|.+|++++| ++..++.||.+||..+.|+|++..|+++|+|.+||+ |..-........+++..
T Consensus 446 sGelV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi---W~if~s~~~vEtl~i~s 521 (893)
T KOG0291|consen 446 SGELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI---WDIFSSSGTVETLEIRS 521 (893)
T ss_pred CCCEEEeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEE---EEeeccCceeeeEeecc
Confidence 999999999876 6999999998 566899999999999999999999999999999999 32222112234455789
Q ss_pred ceEEEEEcCCCCEEEEEecC-cEEEEe
Q 010256 488 KLLHLAWHPSENSIACAASN-SLYMYY 513 (514)
Q Consensus 488 ~v~~~~~spd~~~l~~~~~~-~~~i~~ 513 (514)
.++.++|+|||+-||+++-+ .+-+|.
T Consensus 522 dvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 522 DVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred ceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 99999999999999998844 777775
No 11
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.4e-38 Score=273.44 Aligned_cols=383 Identities=14% Similarity=0.214 Sum_probs=287.3
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeec---cCCCccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ---SHEPEFDYLKS 108 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~~~~~~~ 108 (514)
..|...|+|+.|+|||+++|+.+.||.|.|||=.+++.. .++. +|.
T Consensus 187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v-----------------------g~l~~~~aHk-------- 235 (603)
T KOG0318|consen 187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV-----------------------GELEDSDAHK-------- 235 (603)
T ss_pred cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE-----------------------EEecCCCCcc--------
Confidence 478999999999999999999999999999998887743 3444 676
Q ss_pred cccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
+.|.++.| +||++.+++++.|.++||||+.+.++.....+... +..... .+.|. ...|
T Consensus 236 ----GsIfalsW--sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~---------v~dqqv---G~lWq--kd~l-- 293 (603)
T KOG0318|consen 236 ----GSIFALSW--SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST---------VEDQQV---GCLWQ--KDHL-- 293 (603)
T ss_pred ----ccEEEEEE--CCCCceEEEecCCceEEEEEeeccceEEEeecCCc---------hhceEE---EEEEe--CCeE--
Confidence 99999999 67888999999999999999999988777665422 111111 22333 3333
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
++.+.+|.|.+++ ....+ ..+. ..+|...|+++..+|++++|.+| .||.|.-|+..++...
T Consensus 294 ----------ItVSl~G~in~ln-~~d~~------~~~~-i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 294 ----------ITVSLSGTINYLN-PSDPS------VLKV-ISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred ----------EEEEcCcEEEEec-ccCCC------hhhe-ecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 7788889998877 32222 2223 38999999999999999999999 8999999999866543
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCC---------------
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG--------------- 332 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~--------------- 332 (514)
. + .-+.|...|.+++.+..+ .+++.+.|.++++.++..+....... ++....|.
T Consensus 356 ~-~------~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~--~~lg~QP~~lav~~d~~~avv~~ 424 (603)
T KOG0318|consen 356 R-L------AGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEV--VKLGSQPKGLAVLSDGGTAVVAC 424 (603)
T ss_pred c-c------ccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccce--eecCCCceeEEEcCCCCEEEEEe
Confidence 1 1 126689999999988765 57888999999999885433211100 01100000
Q ss_pred --ccceeecc--------ccceeEEEEecCCCEEEEEe-CCeEEEEEccCCC-CceeeeeeccccccccccccccCCccc
Q 010256 333 --TRSFFTEI--------IASISDIKFARNGRHILSRD-YMTLKLWDINMDS-GPVATFQVHEHLRPKLCDLYENDSIFD 400 (514)
Q Consensus 333 --~~~~~~~~--------~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
....++.+ .-...+++++|++..++.|. |+.|+||.+.-.. .....+..|...
T Consensus 425 ~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~--------------- 489 (603)
T KOG0318|consen 425 ISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAA--------------- 489 (603)
T ss_pred cCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCC---------------
Confidence 01111111 22467899999999999975 5999999998411 223334445443
Q ss_pred eeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCC
Q 010256 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG 480 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~ 480 (514)
++++++|||+.|||++...+.+.+||+.+.+.....+.-|+..|.+++|+|+.+++|+||.|..|.++.-.+|... ..
T Consensus 490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~--i~ 567 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH--II 567 (603)
T ss_pred ceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh--eE
Confidence 4499999999999999999999999999886655666679999999999999999999999999999666666642 22
Q ss_pred cccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 481 NAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 481 ~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
....|...|+.++|-.+...+-+|.+-.+.+|+
T Consensus 568 iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 568 IKNAHLGGVNSVAWLDESTVVSSGQDANIKVWN 600 (603)
T ss_pred eccccccCceeEEEecCceEEeccCcceeEEec
Confidence 233578889999998888877788899999997
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-38 Score=254.26 Aligned_cols=298 Identities=14% Similarity=0.242 Sum_probs=238.6
Q ss_pred cccccccceEEEEEcCC-CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccc
Q 010256 30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~-g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (514)
...+|++.|+.++..+. .+.|++++.|..+.+|++..... +-+...+.+.||+
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~------------------~~G~~~r~~~GHs-------- 63 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI------------------KYGVPVRRLTGHS-------- 63 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc------------------ccCceeeeeeccc--------
Confidence 45689999999999996 56899999999999999876532 2344577889998
Q ss_pred cccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
..|..+.. +++|++.++++.|+++++||+.+++..+.+..+. ..|. ++++++|.+++
T Consensus 64 ----H~v~dv~~--s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~--------~dVl-------sva~s~dn~qi-- 120 (315)
T KOG0279|consen 64 ----HFVSDVVL--SSDGNFALSASWDGTLRLWDLATGESTRRFVGHT--------KDVL-------SVAFSTDNRQI-- 120 (315)
T ss_pred ----eEecceEE--ccCCceEEeccccceEEEEEecCCcEEEEEEecC--------CceE-------EEEecCCCcee--
Confidence 77999999 6788899999999999999999998777776663 3344 88999999999
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeecccccccccccccccc-ccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCC
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSD--GETFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~ 264 (514)
++|+.|.+|++|+++.. +.-+.. ..+.+.|.|+.|+|+ ..+|+++ .|++|++||+++-
T Consensus 121 ----------vSGSrDkTiklwnt~g~--------ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~ 182 (315)
T KOG0279|consen 121 ----------VSGSRDKTIKLWNTLGV--------CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC 182 (315)
T ss_pred ----------ecCCCcceeeeeeeccc--------EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc
Confidence 99999999999993322 222221 234789999999998 7888888 9999999999854
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
+.. ..+.+|.+.++.++++||| .++++|+.||.+.+||++.++. ++.++ |...|
T Consensus 183 ~l~--------~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~----lysl~-------------a~~~v 236 (315)
T KOG0279|consen 183 QLR--------TTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKN----LYSLE-------------AFDIV 236 (315)
T ss_pred chh--------hccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCce----eEecc-------------CCCeE
Confidence 433 2678899999999999999 8999999999999999999876 33333 34689
Q ss_pred eEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccc-cccccccccCCccceeeEEEcCCCCEEEEEeCCCcEE
Q 010256 345 SDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLR-PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (514)
.+++|+|+.-.|+.+.+..|+|||+.. +..+..+....... .+. +... -.+++|++||..|++|-.|+.|+
T Consensus 237 ~sl~fspnrywL~~at~~sIkIwdl~~-~~~v~~l~~d~~g~s~~~------~~~~-clslaws~dG~tLf~g~td~~ir 308 (315)
T KOG0279|consen 237 NSLCFSPNRYWLCAATATSIKIWDLES-KAVVEELKLDGIGPSSKA------GDPI-CLSLAWSADGQTLFAGYTDNVIR 308 (315)
T ss_pred eeEEecCCceeEeeccCCceEEEeccc-hhhhhhcccccccccccc------CCcE-EEEEEEcCCCcEEEeeecCCcEE
Confidence 999999998888888887899999997 77776665432211 000 0011 23789999999999999999999
Q ss_pred EEecC
Q 010256 424 VFGCS 428 (514)
Q Consensus 424 iwd~~ 428 (514)
+|.+.
T Consensus 309 v~qv~ 313 (315)
T KOG0279|consen 309 VWQVA 313 (315)
T ss_pred EEEee
Confidence 99875
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.1e-38 Score=256.64 Aligned_cols=286 Identities=19% Similarity=0.343 Sum_probs=228.7
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|.++.|++|.++|++++.||.+.|||.-+.... ..+.-..
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-----------------------haipl~s---------- 97 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-----------------------HAIPLPS---------- 97 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-----------------------eEEecCc----------
Confidence 4689999999999999999999999999999997655432 1111111
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccE----EEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK----VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
..|...+|+ |.|+++++|+.|+...||++.+.+ ......+..+ .+.+. +..|.+|+++
T Consensus 98 --~WVMtCA~s--PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gH------tgylS-------cC~f~dD~~i- 159 (343)
T KOG0286|consen 98 --SWVMTCAYS--PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGH------TGYLS-------CCRFLDDNHI- 159 (343)
T ss_pred --eeEEEEEEC--CCCCeEEecCcCceeEEEecccccccccceeeeeecCc------cceeE-------EEEEcCCCce-
Confidence 678999995 556699999999999999998541 1122222222 23332 5667776655
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCC
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~ 264 (514)
++++.|.+..+||| .. ++....| .+|.+.|.+++++| +++.+++| -|+..++||++.+
T Consensus 160 ------------lT~SGD~TCalWDi-e~------g~~~~~f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~ 219 (343)
T KOG0286|consen 160 ------------LTGSGDMTCALWDI-ET------GQQTQVF-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG 219 (343)
T ss_pred ------------EecCCCceEEEEEc-cc------ceEEEEe-cCCcccEEEEecCCCCCCeEEecccccceeeeeccCc
Confidence 89999999999992 22 3333444 89999999999999 89999999 8999999999966
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
... +++.+|...|.++.|.|+| .-|++|+.|++.|+||+|..+.+ ..|.... ...+|
T Consensus 220 ~c~--------qtF~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~~----a~ys~~~----------~~~gi 276 (343)
T KOG0286|consen 220 QCV--------QTFEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQEL----AVYSHDS----------IICGI 276 (343)
T ss_pred cee--------EeecccccccceEEEccCC-CeeeecCCCceeEEEeecCCcEE----eeeccCc----------ccCCc
Confidence 433 2789999999999999999 89999999999999999987653 3333221 23589
Q ss_pred eEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEE
Q 010256 345 SDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (514)
++++||..|++|++| .|.++.+||.-. ++.+..+.+|+..+ .++..+|||.-+++|+.|..++
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk-~e~vg~L~GHeNRv---------------Scl~~s~DG~av~TgSWDs~lr 340 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLK-GERVGVLAGHENRV---------------SCLGVSPDGMAVATGSWDSTLR 340 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccc-cceEEEeeccCCee---------------EEEEECCCCcEEEecchhHhee
Confidence 999999999999997 459999999987 88999999998764 4999999999999999999999
Q ss_pred EEe
Q 010256 424 VFG 426 (514)
Q Consensus 424 iwd 426 (514)
||.
T Consensus 341 iW~ 343 (343)
T KOG0286|consen 341 IWA 343 (343)
T ss_pred ecC
Confidence 994
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.6e-37 Score=279.72 Aligned_cols=400 Identities=16% Similarity=0.218 Sum_probs=293.1
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCc-cccccccc-ccccCCccceeeeeeccCCCccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQ-RRDLEMMD-YSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (514)
..+|.+.|-+.-|..+...|.|-+.||.+.+|........... +..-++.. ....-..+. +.|...|.-.+.
T Consensus 185 l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Ee------k~~~~~~~k~~k 258 (893)
T KOG0291|consen 185 LNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEE------KTHKIFWYKTKK 258 (893)
T ss_pred ccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchh------hhcceEEEEEEe
Confidence 4589999999999999999999999999999998733211000 00000000 000000000 001000000000
Q ss_pred cc---cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 109 LE---IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 109 ~~---~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
.- -...|++.+|++.. ..|+++-..|...+|.+....++....... ..|. .+.|+..|..
T Consensus 259 ~~ln~~~~kvtaa~fH~~t--~~lvvgFssG~f~LyelP~f~lih~LSis~--------~~I~-------t~~~N~tGDW 321 (893)
T KOG0291|consen 259 HYLNQNSSKVTAAAFHKGT--NLLVVGFSSGEFGLYELPDFNLIHSLSISD--------QKIL-------TVSFNSTGDW 321 (893)
T ss_pred eeecccccceeeeeccCCc--eEEEEEecCCeeEEEecCCceEEEEeeccc--------ceee-------EEEecccCCE
Confidence 00 11679999996544 489999999999999999988777665542 2222 6778888888
Q ss_pred cccccCCCCCCcccCCCC-CCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccC
Q 010256 186 GERNFGCASNDSSFPPGG-VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 263 (514)
Q Consensus 186 l~~~~~~~~~~~~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 263 (514)
+ +.|+. -|.+.+|+ |..+.-.. . ..+|...+.+++++|||+++++| +||.|++||...
T Consensus 322 i------------A~g~~klgQLlVwe--WqsEsYVl-----K-QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S 381 (893)
T KOG0291|consen 322 I------------AFGCSKLGQLLVWE--WQSESYVL-----K-QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS 381 (893)
T ss_pred E------------EEcCCccceEEEEE--eeccceee-----e-ccccccceeeEEECCCCcEEEeccCCCcEEEEeccC
Confidence 7 66554 48999998 44443111 1 27899999999999999999999 999999999985
Q ss_pred CCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccc
Q 010256 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (514)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (514)
+-... ++..|...|+.+.|+..+ +.+++.+.||+|+.||+..... .++|..++. -.
T Consensus 382 gfC~v--------TFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrN----fRTft~P~p-----------~Q 437 (893)
T KOG0291|consen 382 GFCFV--------TFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRN----FRTFTSPEP-----------IQ 437 (893)
T ss_pred ceEEE--------EeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccce----eeeecCCCc-----------ee
Confidence 43332 688899999999999999 9999999999999999987654 556655432 35
Q ss_pred eeEEEEecCCCEEEEEe-C-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCc
Q 010256 344 ISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (514)
Q Consensus 344 i~~~~~s~~g~~l~~~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 421 (514)
..+++..|.|.++.+|+ | -.|.+|++++ ++.+..+.+|++++. +++|+|++..|+++|.|.+
T Consensus 438 fscvavD~sGelV~AG~~d~F~IfvWS~qT-GqllDiLsGHEgPVs---------------~l~f~~~~~~LaS~SWDkT 501 (893)
T KOG0291|consen 438 FSCVAVDPSGELVCAGAQDSFEIFVWSVQT-GQLLDILSGHEGPVS---------------GLSFSPDGSLLASGSWDKT 501 (893)
T ss_pred eeEEEEcCCCCEEEeeccceEEEEEEEeec-CeeeehhcCCCCcce---------------eeEEccccCeEEeccccce
Confidence 67889999999999985 4 7899999999 999999999998854 8999999999999999999
Q ss_pred EEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEe-----------------eCCCCCccccCCcccc
Q 010256 422 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV-----------------KGADNSALDANGNAFD 484 (514)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~-----------------~~~~~~~~~~~~~~~~ 484 (514)
|++||+-.......++ .+...+..+.|+|+|+-|+++..||.+.+. .+.+...+.+....-.
T Consensus 502 VRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa 580 (893)
T KOG0291|consen 502 VRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSA 580 (893)
T ss_pred EEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcc
Confidence 9999997653332333 456678899999999999999999999981 1222222223333334
Q ss_pred cccceEEEEEcCCCCEEEEEe-cCcEEEEeC
Q 010256 485 FSMKLLHLAWHPSENSIACAA-SNSLYMYYA 514 (514)
Q Consensus 485 ~~~~v~~~~~spd~~~l~~~~-~~~~~i~~~ 514 (514)
..+..+.+.+|+||+.|++|+ .+.++||.+
T Consensus 581 ~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 581 KGKTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred cCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 457899999999999988777 888999864
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.8e-37 Score=246.48 Aligned_cols=267 Identities=15% Similarity=0.223 Sum_probs=217.5
Q ss_pred cEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCc
Q 010256 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (514)
Q Consensus 127 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (514)
-+|++++.|.+||+|...+|.+...+.... +.|. .+...|+++.| + ......
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~d--------sqVN-------rLeiTpdk~~L------------A-aa~~qh 62 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPD--------SQVN-------RLEITPDKKDL------------A-AAGNQH 62 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCc--------ccee-------eEEEcCCcchh------------h-hccCCe
Confidence 478999999999999999999988877762 3333 78899999985 4 445679
Q ss_pred EEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCce
Q 010256 207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 285 (514)
Q Consensus 207 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 285 (514)
||+|| +.+... .+...| .+|+..|.++.|..+|+++++| +||+++|||++..... ....+..+|
T Consensus 63 vRlyD-~~S~np----~Pv~t~-e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q---------R~~~~~spV 127 (311)
T KOG0315|consen 63 VRLYD-LNSNNP----NPVATF-EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ---------RNYQHNSPV 127 (311)
T ss_pred eEEEE-ccCCCC----CceeEE-eccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc---------hhccCCCCc
Confidence 99999 433322 144454 8999999999999999999999 9999999999963322 334477999
Q ss_pred EEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeE
Q 010256 286 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTL 364 (514)
Q Consensus 286 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i 364 (514)
+++..+|+. ..|++|..+|.|++||+........ + ..+-..+|.++...|||.+++++.+ |+.
T Consensus 128 n~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~----l-----------iPe~~~~i~sl~v~~dgsml~a~nnkG~c 191 (311)
T KOG0315|consen 128 NTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHE----L-----------IPEDDTSIQSLTVMPDGSMLAAANNKGNC 191 (311)
T ss_pred ceEEecCCc-ceEEeecCCCcEEEEEccCCccccc----c-----------CCCCCcceeeEEEcCCCcEEEEecCCccE
Confidence 999999998 7899999999999999988654211 1 1112257999999999999999877 999
Q ss_pred EEEEccC-----CCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC
Q 010256 365 KLWDINM-----DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 439 (514)
Q Consensus 365 ~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 439 (514)
++|++-. +-+++..++.|... ++.+.+|||+++||+++.|.+++||+.+..-+....+++
T Consensus 192 yvW~l~~~~~~s~l~P~~k~~ah~~~---------------il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g 256 (311)
T KOG0315|consen 192 YVWRLLNHQTASELEPVHKFQAHNGH---------------ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG 256 (311)
T ss_pred EEEEccCCCccccceEhhheecccce---------------EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec
Confidence 9999875 12345556666554 348999999999999999999999999876455588999
Q ss_pred CCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 440 SKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 440 ~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|...++..+||.|++||++++.|+.+++
T Consensus 257 h~rWvWdc~FS~dg~YlvTassd~~~rl 284 (311)
T KOG0315|consen 257 HQRWVWDCAFSADGEYLVTASSDHTARL 284 (311)
T ss_pred CCceEEeeeeccCccEEEecCCCCceee
Confidence 9999999999999999999999999999
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.7e-38 Score=269.75 Aligned_cols=283 Identities=19% Similarity=0.353 Sum_probs=236.3
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.......|++++|+.+|..||+|+.||.++||+..... ..++..|.
T Consensus 231 s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l------------------------~~tl~~Hk---------- 276 (524)
T KOG0273|consen 231 SVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL------------------------ISTLGQHK---------- 276 (524)
T ss_pred cCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchh------------------------hhhhhccC----------
Confidence 45556789999999999999999999999999975443 35678888
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
++|.++.| +..|.+|++++.|+++.+||..++...+.+.++..+. ..+.|-.+...
T Consensus 277 --gPI~slKW--nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~---------------lDVdW~~~~~F----- 332 (524)
T KOG0273|consen 277 --GPIFSLKW--NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA---------------LDVDWQSNDEF----- 332 (524)
T ss_pred --CceEEEEE--cCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc---------------cceEEecCceE-----
Confidence 99999999 6788999999999999999999999888888774331 03445544443
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
++.+.|+.|+++. +.. ..+..++ .+|.++|.++.|+|.+.+|+++ +|++++||.+.......
T Consensus 333 --------~ts~td~~i~V~k-v~~------~~P~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~- 395 (524)
T KOG0273|consen 333 --------ATSSTDGCIHVCK-VGE------DRPVKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH- 395 (524)
T ss_pred --------eecCCCceEEEEE-ecC------CCcceee-ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh-
Confidence 8899999999988 322 2344454 6799999999999999999999 99999999987544332
Q ss_pred eeccCCCcccccCCceEEEEEecCCC--------cEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccc
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHC--------NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~--------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (514)
.+..|...|..+.|+|+|+ ..+++++.|++|++||+..+..+ ..|..|.
T Consensus 396 -------~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i----------------~~f~kH~ 452 (524)
T KOG0273|consen 396 -------DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI----------------HTLMKHQ 452 (524)
T ss_pred -------hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee----------------EeeccCC
Confidence 5788999999999999764 47999999999999999998763 2256677
Q ss_pred cceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCC
Q 010256 342 ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (514)
.+|++++|+|+|+++++|+- |.|.+|+.++ ++.++.+.+... |+.++|+.+|.+|..+-.|+
T Consensus 453 ~pVysvafS~~g~ylAsGs~dg~V~iws~~~-~~l~~s~~~~~~----------------Ifel~Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 453 EPVYSVAFSPNGRYLASGSLDGCVHIWSTKT-GKLVKSYQGTGG----------------IFELCWNAAGDKLGACASDG 515 (524)
T ss_pred CceEEEEecCCCcEEEecCCCCeeEeccccc-hheeEeecCCCe----------------EEEEEEcCCCCEEEEEecCC
Confidence 89999999999999999975 9999999998 888888876543 45899999999999999999
Q ss_pred cEEEEecC
Q 010256 421 LFRVFGCS 428 (514)
Q Consensus 421 ~i~iwd~~ 428 (514)
.+.+-|+.
T Consensus 516 ~vcvldlr 523 (524)
T KOG0273|consen 516 SVCVLDLR 523 (524)
T ss_pred CceEEEec
Confidence 99998875
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.5e-37 Score=265.10 Aligned_cols=333 Identities=17% Similarity=0.289 Sum_probs=255.2
Q ss_pred cccccceEEEEEcCCCC-eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 32 VQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..|..+|.+.+|+|-.. .|++|+.|-..++|++......+.....|. ......+ ++.+
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr-------------h~~~~~~--------~s~~ 233 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR-------------HCIREGG--------KSVP 233 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh-------------hhhhhhc--------ccCC
Confidence 35999999999999665 999999999999999864221100000000 0000111 1222
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
-...|++++| +.+|..|++|+.||.+++|+......
T Consensus 234 ~nkdVT~L~W--n~~G~~LatG~~~G~~riw~~~G~l~------------------------------------------ 269 (524)
T KOG0273|consen 234 SNKDVTSLDW--NNDGTLLATGSEDGEARIWNKDGNLI------------------------------------------ 269 (524)
T ss_pred ccCCcceEEe--cCCCCeEEEeecCcEEEEEecCchhh------------------------------------------
Confidence 2367999999 67889999999999999999765421
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
.. +..|+++|.++.|+.+|.+|+++ .|+++.+||..++....
T Consensus 270 -----------------------------------~t-l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q- 312 (524)
T KOG0273|consen 270 -----------------------------------ST-LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ- 312 (524)
T ss_pred -----------------------------------hh-hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE-
Confidence 01 36799999999999999999999 89999999997655433
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.++-|..+...+.|-.+ ..|++++.|+.|+++.+..... ...+.+|.+.|.++.|
T Consensus 313 -------~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P----------------~~t~~GH~g~V~alk~ 367 (524)
T KOG0273|consen 313 -------QFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRP----------------VKTFIGHHGEVNALKW 367 (524)
T ss_pred -------eeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCc----------------ceeeecccCceEEEEE
Confidence 34556776678999876 4799999999999999866443 2346677899999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC---------CEEEEEeCC
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG---------GRVATGSYS 419 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~s~~~d 419 (514)
.|.|.+|++++| ++++||+... ......+..|... |+.+.|+|+| ..|++++.|
T Consensus 368 n~tg~LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hske---------------i~t~~wsp~g~v~~n~~~~~~l~sas~d 431 (524)
T KOG0273|consen 368 NPTGSLLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKE---------------IYTIKWSPTGPVTSNPNMNLMLASASFD 431 (524)
T ss_pred CCCCceEEEecCCCeeEeeecCC-Ccchhhhhhhccc---------------eeeEeecCCCCccCCCcCCceEEEeecC
Confidence 999999999876 9999999986 7888888888754 3378888865 378999999
Q ss_pred CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCC
Q 010256 420 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 499 (514)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~ 499 (514)
+.|++||+..+.++ .++..|+.+|++++|+|+++++|+|+.||.|.+ |......+. ..+.-.+.|..+.|+.+|+
T Consensus 432 stV~lwdv~~gv~i-~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~i---ws~~~~~l~-~s~~~~~~Ifel~Wn~~G~ 506 (524)
T KOG0273|consen 432 STVKLWDVESGVPI-HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHI---WSTKTGKLV-KSYQGTGGIFELCWNAAGD 506 (524)
T ss_pred CeEEEEEccCCcee-EeeccCCCceEEEEecCCCcEEEecCCCCeeEe---ccccchhee-EeecCCCeEEEEEEcCCCC
Confidence 99999999998554 889999999999999999999999999999999 222211111 1122366799999999998
Q ss_pred EEE-EEecCcEEEE
Q 010256 500 SIA-CAASNSLYMY 512 (514)
Q Consensus 500 ~l~-~~~~~~~~i~ 512 (514)
.|. +.+++.+++.
T Consensus 507 kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 507 KLGACASDGSVCVL 520 (524)
T ss_pred EEEEEecCCCceEE
Confidence 887 4456666553
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=240.96 Aligned_cols=296 Identities=14% Similarity=0.235 Sum_probs=232.6
Q ss_pred CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCc
Q 010256 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (514)
Q Consensus 48 ~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 127 (514)
-+|++++.|.+||+|...+|. ...+++..+ ..|+.+.. .++++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~-----------------------C~rTiqh~d------------sqVNrLei--Tpdk~ 53 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGI-----------------------CSRTIQHPD------------SQVNRLEI--TPDKK 53 (311)
T ss_pred eEEEeccCcceeeeeehhcCe-----------------------EEEEEecCc------------cceeeEEE--cCCcc
Confidence 489999999999999999887 445565554 77999999 66776
Q ss_pred EEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcE
Q 010256 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (514)
Q Consensus 128 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 207 (514)
.|++++. ..||+||+.+++...+..+..+. ..|. .+.|..+|+.+ ++|++||++
T Consensus 54 ~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~------kNVt-------aVgF~~dgrWM------------yTgseDgt~ 107 (311)
T KOG0315|consen 54 DLAAAGN-QHVRLYDLNSNNPNPVATFEGHT------KNVT-------AVGFQCDGRWM------------YTGSEDGTV 107 (311)
T ss_pred hhhhccC-CeeEEEEccCCCCCceeEEeccC------CceE-------EEEEeecCeEE------------EecCCCceE
Confidence 7776664 78999999988765554444332 2333 78999999999 999999999
Q ss_pred EeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceE
Q 010256 208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT 286 (514)
Q Consensus 208 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 286 (514)
+||| +.. ..+.+. ..|..+|+++..+|+..-|++| .+|.|++||+.+......+ .......|.
T Consensus 108 kIWd-lR~------~~~qR~--~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l-------iPe~~~~i~ 171 (311)
T KOG0315|consen 108 KIWD-LRS------LSCQRN--YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL-------IPEDDTSIQ 171 (311)
T ss_pred EEEe-ccC------cccchh--ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc-------CCCCCccee
Confidence 9999 444 233344 4677999999999999999999 8999999999855433322 233457899
Q ss_pred EEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEE
Q 010256 287 SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLK 365 (514)
Q Consensus 287 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~ 365 (514)
++...|+| .+++.+...|...+|++-+.... ..++ +...++.|.+.+..+.+|||+++|++++ |.+++
T Consensus 172 sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~----s~l~------P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~ 240 (311)
T KOG0315|consen 172 SLTVMPDG-SMLAAANNKGNCYVWRLLNHQTA----SELE------PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVK 240 (311)
T ss_pred eEEEcCCC-cEEEEecCCccEEEEEccCCCcc----ccce------EhhheecccceEEEEEECCCCcEEEeecCCceEE
Confidence 99999999 89999999999999999774431 1121 1223778889999999999999999965 69999
Q ss_pred EEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCccee
Q 010256 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR 445 (514)
Q Consensus 366 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 445 (514)
||+.+.--+....+++|+.. ++.++||.||+||++|+.|+.+++|++..++. .....+|..+..
T Consensus 241 iwn~~~~~kle~~l~gh~rW---------------vWdc~FS~dg~YlvTassd~~~rlW~~~~~k~-v~qy~gh~K~~v 304 (311)
T KOG0315|consen 241 IWNTDDFFKLELVLTGHQRW---------------VWDCAFSADGEYLVTASSDHTARLWDLSAGKE-VRQYQGHHKAAV 304 (311)
T ss_pred EEecCCceeeEEEeecCCce---------------EEeeeeccCccEEEecCCCCceeecccccCce-eeecCCcccccE
Confidence 99998733666777888765 56999999999999999999999999998854 467777776655
Q ss_pred EEEE
Q 010256 446 RQVQ 449 (514)
Q Consensus 446 ~~~~ 449 (514)
+++.
T Consensus 305 c~~l 308 (311)
T KOG0315|consen 305 CVAL 308 (311)
T ss_pred EEEe
Confidence 5554
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.2e-37 Score=256.80 Aligned_cols=285 Identities=15% Similarity=0.253 Sum_probs=240.8
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.++|.|+++.|..++|++|+.|++|+|||+.+++ +..++.||-
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-----------------------LkltltGhi---------- 193 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-----------------------LKLTLTGHI---------- 193 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-----------------------EEEeecchh----------
Confidence 34899999999999999999999999999999999888 557889998
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|..+++++... |+++++.|+.|+.||++.++.+
T Consensus 194 --~~vr~vavS~rHp--YlFs~gedk~VKCwDLe~nkvI----------------------------------------- 228 (460)
T KOG0285|consen 194 --ETVRGVAVSKRHP--YLFSAGEDKQVKCWDLEYNKVI----------------------------------------- 228 (460)
T ss_pred --heeeeeeecccCc--eEEEecCCCeeEEEechhhhhH-----------------------------------------
Confidence 8899999965544 9999999999999999876521
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+.| .+|-..|.+++.+|.-..|++| .|.++++||+++.....
T Consensus 229 -----------------------------------R~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~- 271 (460)
T KOG0285|consen 229 -----------------------------------RHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH- 271 (460)
T ss_pred -----------------------------------HHh-ccccceeEEEeccccceeEEecCCcceEEEeeecccceEE-
Confidence 122 6888999999999999999999 99999999999776654
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+.+|...|.++.+.|.. ..+++|+.|++|++||++.++.. ..+..|+..+++++.
T Consensus 272 -------~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~----------------~tlt~hkksvral~l 327 (460)
T KOG0285|consen 272 -------VLSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTM----------------ITLTHHKKSVRALCL 327 (460)
T ss_pred -------EecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCcee----------------EeeecccceeeEEec
Confidence 578999999999999988 68999999999999999998753 235667789999999
Q ss_pred ecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 350 ARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 350 s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
+|....+++++...|+-|++.. +..+..+.+|...+. +++.+.|| ++++|++.|.+.+||.++
T Consensus 328 hP~e~~fASas~dnik~w~~p~-g~f~~nlsgh~~iin---------------tl~~nsD~-v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 328 HPKENLFASASPDNIKQWKLPE-GEFLQNLSGHNAIIN---------------TLSVNSDG-VLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred CCchhhhhccCCccceeccCCc-cchhhccccccceee---------------eeeeccCc-eEEEcCCceEEEEEecCc
Confidence 9999999998878999999997 888888888887643 78877665 677899999999999998
Q ss_pred Cceee--eee--cC---CCcceeEEEECCCCCceeecCCCCeEEEeeCC
Q 010256 430 GSAES--TTL--EA---SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 471 (514)
Q Consensus 430 ~~~~~--~~~--~~---~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~ 471 (514)
+.... ++. .+ ....|.+.+|...+..|++|..|.+|++++..
T Consensus 391 g~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 391 GHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred CcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 74432 111 12 23457889999999999999999999994433
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.7e-36 Score=247.51 Aligned_cols=286 Identities=19% Similarity=0.283 Sum_probs=233.2
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|..+.|+|+|.+||+|+.|..|.+|++..... -...+++|.
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce----------------------N~~~lkgHs---------- 90 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE----------------------NFWVLKGHS---------- 90 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc----------------------ceeeecccc----------
Confidence 348999999999999999999999999999999765443 334577998
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|..+.| ..++..+++++.|++++.||+++|+....
T Consensus 91 --gAVM~l~~--~~d~s~i~S~gtDk~v~~wD~~tG~~~rk--------------------------------------- 127 (338)
T KOG0265|consen 91 --GAVMELHG--MRDGSHILSCGTDKTVRGWDAETGKRIRK--------------------------------------- 127 (338)
T ss_pred --ceeEeeee--ccCCCEEEEecCCceEEEEecccceeeeh---------------------------------------
Confidence 99999999 67888999999999999999999874332
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE-Ee-cCCeEEEEeccCCCcee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~ 268 (514)
..+|..-|+++.-+.-|..|+ ++ +|+++++||+++....
T Consensus 128 --------------------------------------~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~- 168 (338)
T KOG0265|consen 128 --------------------------------------HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI- 168 (338)
T ss_pred --------------------------------------hccccceeeecCccccCCeEEEecCCCceEEEEeecccchh-
Confidence 156667777777555555555 56 8999999999954433
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
+ ......+++++.|..++ ..+.+|+-|+.|++||++.+.. .+ ++.||..+|+.+.
T Consensus 169 ~--------t~~~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~----~~------------~lsGh~DtIt~ls 223 (338)
T KOG0265|consen 169 K--------TFENKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDG----LY------------TLSGHADTITGLS 223 (338)
T ss_pred h--------ccccceeEEEEEecccc-cceeeccccCceeeeccccCcc----eE------------EeecccCceeeEE
Confidence 2 22246789999999988 7899999999999999998775 23 3566778999999
Q ss_pred EecCCCEEEEEe-CCeEEEEEccC---CCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEE
Q 010256 349 FARNGRHILSRD-YMTLKLWDINM---DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (514)
Q Consensus 349 ~s~~g~~l~~~~-~~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 424 (514)
.+|+|.++.+-+ |.++++||++. ..+++..+.+|..... .. ...++|+|+++.+.+|+.|..+++
T Consensus 224 ls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe--------kn---lL~cswsp~~~~i~ags~dr~vyv 292 (338)
T KOG0265|consen 224 LSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE--------KN---LLKCSWSPNGTKITAGSADRFVYV 292 (338)
T ss_pred eccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhh--------hh---cceeeccCCCCccccccccceEEE
Confidence 999999999965 69999999984 1334667776654311 00 237899999999999999999999
Q ss_pred EecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 425 FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 425 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
||..+. ..+..+.+|...|..+.|+|...+|.+++.|+++.+
T Consensus 293 wd~~~r-~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 293 WDTTSR-RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred eecccc-cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999865 455899999999999999999999999999999998
No 21
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-36 Score=254.80 Aligned_cols=282 Identities=16% Similarity=0.230 Sum_probs=247.0
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|...|+.+-|+|+-..+++++.|++|++||..+++ +...++||.
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~-----------------------~e~~LrGHt---------- 150 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE-----------------------LERSLRGHT---------- 150 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchh-----------------------hhhhhhccc----------
Confidence 35799999999999999999999999999999999887 447789999
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|.+|.| ...|+++++++.|-.+++||..+..
T Consensus 151 --~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~~------------------------------------------- 183 (406)
T KOG0295|consen 151 --DSVFDISF--DASGKYLATCSSDLSAKLWDFDTFF------------------------------------------- 183 (406)
T ss_pred --cceeEEEE--ecCccEEEecCCccchhheeHHHHH-------------------------------------------
Confidence 88999999 5678899999999999999987531
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
++.+. +.+|...|.+++|-|.|.+++++ .|.+|+.|++.++....
T Consensus 184 --------------------------------~c~ks-~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~- 229 (406)
T KOG0295|consen 184 --------------------------------RCIKS-LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK- 229 (406)
T ss_pred --------------------------------HHHHH-hcCcccceeeEEEEecCCeeeecccccceeEEecccceeEE-
Confidence 12222 37888999999999999999999 99999999999776543
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
++.+|...|..++.+.|| .++++++.|.++++|-+.++++. ..+.+|..+|.+++|
T Consensus 230 -------t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k----------------~~lR~hEh~vEci~w 285 (406)
T KOG0295|consen 230 -------TFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCK----------------AELREHEHPVECIAW 285 (406)
T ss_pred -------eccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhh----------------hhhhccccceEEEEe
Confidence 678899999999999999 99999999999999999887542 225556678999998
Q ss_pred ecC---------------CCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEE
Q 010256 350 ARN---------------GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (514)
Q Consensus 350 s~~---------------g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (514)
-|. ++++.+++ |++|++||+.+ +.++.++.+|...+. .++|+|.|+||
T Consensus 286 ap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwVr---------------~~af~p~Gkyi 349 (406)
T KOG0295|consen 286 APESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWVR---------------GVAFSPGGKYI 349 (406)
T ss_pred cccccCcchhhccCCCCCccEEEeecccceEEEEeccC-CeEEEEEecccceee---------------eeEEcCCCeEE
Confidence 762 36888886 49999999998 999999999998854 89999999999
Q ss_pred EEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 414 ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 414 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+++.+|+++++||++++++. .+++.|..-+..+.|..+..++++|+-|.++++
T Consensus 350 ~ScaDDktlrvwdl~~~~cm-k~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kv 402 (406)
T KOG0295|consen 350 LSCADDKTLRVWDLKNLQCM-KTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 402 (406)
T ss_pred EEEecCCcEEEEEeccceee-eccCCCcceeEEEecCCCCceEEeccccceeee
Confidence 99999999999999998665 788899999999999999999999999999988
No 22
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-36 Score=273.83 Aligned_cols=381 Identities=15% Similarity=0.170 Sum_probs=291.7
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeecc-CCCcccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~ 109 (514)
..+..+.|++++.+||+++|++++..+.+++|++.+++. .+.++. |+
T Consensus 58 ~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~-----------------------irswKa~He--------- 105 (775)
T KOG0319|consen 58 SNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKL-----------------------IRSWKAIHE--------- 105 (775)
T ss_pred CccchhhhheeeecCCccEEEEeeccceEEEEEcccchH-----------------------hHhHhhccC---------
Confidence 345678999999999999999999999999999988863 456666 77
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
.+|.-++|. +.+.++++|+.|+.+++||+..+.+...+..+ .|.|. ++.|.|+-...
T Consensus 106 ---~Pvi~ma~~--~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~--------gGvVs-------sl~F~~~~~~~--- 162 (775)
T KOG0319|consen 106 ---APVITMAFD--PTGTLLATGGADGRVKVWDIKNGYCTHSFKGH--------GGVVS-------SLLFHPHWNRW--- 162 (775)
T ss_pred ---CCeEEEEEc--CCCceEEeccccceEEEEEeeCCEEEEEecCC--------CceEE-------EEEeCCccchh---
Confidence 899999995 55679999999999999999999988877765 34454 77777776542
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce-
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS- 267 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~- 267 (514)
++++|..|+.+++|| +..... |... ...|.+.|++++|.+|+..++++ .|..+.+||+...+..
T Consensus 163 -------lL~sg~~D~~v~vwn-l~~~~t-----cl~~-~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~ 228 (775)
T KOG0319|consen 163 -------LLASGATDGTVRVWN-LNDKRT-----CLHT-MILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLK 228 (775)
T ss_pred -------heeecCCCceEEEEE-cccCch-----HHHH-HHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhh
Confidence 349999999999999 332221 3333 37899999999999998888887 8999999987532000
Q ss_pred --------------------------------------------------------------------------------
Q 010256 268 -------------------------------------------------------------------------------- 267 (514)
Q Consensus 268 -------------------------------------------------------------------------------- 267 (514)
T Consensus 229 ~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~ 308 (775)
T KOG0319|consen 229 TLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLY 308 (775)
T ss_pred eechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEE
Confidence
Q ss_pred ---------------------------------------eeeecc---CCCcccccCCceEEEEEecCCCcEEEEEecCC
Q 010256 268 ---------------------------------------FNIVDV---KPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 305 (514)
Q Consensus 268 ---------------------------------------~~~~~~---~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg 305 (514)
+++.+. ...-+.+|...|.+++...+| .+|++|+.|.
T Consensus 309 d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~ 387 (775)
T KOG0319|consen 309 DEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDK 387 (775)
T ss_pred EccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCc
Confidence 000000 012246788888888855666 7999999999
Q ss_pred eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC-CEEEEEe-CCeEEEEEccCCCCce---e---
Q 010256 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWDINMDSGPV---A--- 377 (514)
Q Consensus 306 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~-~~~i~iwd~~~~~~~~---~--- 377 (514)
++++|.++++...... .....+|.+.|.+++++..+ .++++++ |+++++|++.. .++. .
T Consensus 388 svilWr~~~~~~~~~~------------~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~-s~~~~~~~~~~ 454 (775)
T KOG0319|consen 388 SVILWRLNNNCSKSLC------------VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK-SKETAFPIVLT 454 (775)
T ss_pred eEEEEEecCCcchhhh------------hhhhcccccccceeeecccCccEEEEecCCceEEEecCCC-cccccccceeh
Confidence 9999999554322111 12246788999999998755 4667764 69999999975 2211 1
Q ss_pred ---eeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCC
Q 010256 378 ---TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 454 (514)
Q Consensus 378 ---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 454 (514)
+...|.. +|.+++++|+.+++||||.|.+.+||+++.. .+..++.+|+..++++.|+|..+
T Consensus 455 ~~~t~~aHdK---------------dIN~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~dq 518 (775)
T KOG0319|consen 455 CRYTERAHDK---------------DINCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKNDQ 518 (775)
T ss_pred hhHHHHhhcc---------------cccceEecCCCceEEecccccceeeecccCc-eEEEEeeCCccceEEEEeccccc
Confidence 1112222 2449999999999999999999999999955 56699999999999999999999
Q ss_pred ceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 455 SRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 455 ~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
.+|++|.|++|+| |.+..........+|...|..++|-.+++.|++++ ++-+.+|+
T Consensus 519 ~laT~SgD~TvKI---W~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 519 LLATCSGDKTVKI---WSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred eeEeccCCceEEE---EEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 9999999999999 55554445556667999999999999999988655 66677886
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8e-38 Score=265.49 Aligned_cols=278 Identities=19% Similarity=0.312 Sum_probs=237.5
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
.-.|..|.|.|+|+.|++|+..|...+|+..+ +.+...++.|+ ..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-----------------------fnFEtilQaHD------------s~ 140 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-----------------------FNFETILQAHD------------SP 140 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce-----------------------eeHHHHhhhhc------------cc
Confidence 45899999999999999999999999999632 22445578898 99
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
|.++.| +.+|.++++|..+|.|++|+......+
T Consensus 141 Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnmnnVk--------------------------------------------- 173 (464)
T KOG0284|consen 141 VRTMKW--SHNGTWMISGDKGGMIKYWQPNMNNVK--------------------------------------------- 173 (464)
T ss_pred ceeEEE--ccCCCEEEEcCCCceEEecccchhhhH---------------------------------------------
Confidence 999999 567889999999999999987643210
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeecc
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
.+...|...|++++|+|....|+++ +||+|+|||....++..
T Consensus 174 --------------------------------~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~----- 216 (464)
T KOG0284|consen 174 --------------------------------IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER----- 216 (464)
T ss_pred --------------------------------HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh-----
Confidence 1113455889999999999999999 99999999998766543
Q ss_pred CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 274 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
.+.+|.-.|.+++|+|.. .++++|+.|..|++||.+++.++ . .+.+|+..|..+.|+|++
T Consensus 217 ---vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl----~------------tlh~HKntVl~~~f~~n~ 276 (464)
T KOG0284|consen 217 ---VLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCL----A------------TLHGHKNTVLAVKFNPNG 276 (464)
T ss_pred ---eeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchh----h------------hhhhccceEEEEEEcCCC
Confidence 468899999999999998 79999999999999999999874 2 255677899999999999
Q ss_pred CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC-CCEEEEEeCCCcEEEEecCCCc
Q 010256 354 RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGS 431 (514)
Q Consensus 354 ~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~ 431 (514)
.+|++++. ..++++|+++ .+.+.++++|... ++++.|+|- ..+|.+|+.||.|..|.+...+
T Consensus 277 N~Llt~skD~~~kv~DiR~-mkEl~~~r~Hkkd---------------v~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 277 NWLLTGSKDQSCKVFDIRT-MKELFTYRGHKKD---------------VTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE 340 (464)
T ss_pred CeeEEccCCceEEEEehhH-hHHHHHhhcchhh---------------heeeccccccccceeeccCCCceEEEeccccc
Confidence 99999864 9999999997 8889999999865 348999994 5678899999999999998555
Q ss_pred eeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 432 AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 432 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+...-.+|...|++++++|-|.+|++|+.|.++++
T Consensus 341 p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rf 376 (464)
T KOG0284|consen 341 PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRF 376 (464)
T ss_pred cccCCCcccccceeeeeccccceeEeecCCCcceee
Confidence 555666789999999999999999999999999999
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.4e-36 Score=250.96 Aligned_cols=332 Identities=13% Similarity=0.091 Sum_probs=260.5
Q ss_pred ccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccc
Q 010256 29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (514)
Q Consensus 29 ~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (514)
.....|++.|.+++.+|+.+++|||+.|..-.||+..++. ...++.+|+
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-----------------------~~~eltgHK-------- 106 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-----------------------FAGELTGHK-------- 106 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-----------------------ceeEecCCC--------
Confidence 3456899999999999999999999999999999998887 446789998
Q ss_pred cccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
+.|+++.| +.+|.+|++|..+|.|+||+..++.....+.... +.+. =+.|.|.+..+
T Consensus 107 ----DSVt~~~F--shdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~--------~die-------Wl~WHp~a~il-- 163 (399)
T KOG0296|consen 107 ----DSVTCCSF--SHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV--------EDIE-------WLKWHPRAHIL-- 163 (399)
T ss_pred ----CceEEEEE--ccCceEEEecCCCccEEEEEcccCceEEEeeccc--------CceE-------EEEecccccEE--
Confidence 99999999 7889999999999999999999987666554221 1121 46789999988
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
+.|+.||.+.+|. +.+. ...+. +.+|..++++-.|.|+|+.++++ .||+|++|++.+..+.
T Consensus 164 ----------lAG~~DGsvWmw~-ip~~------~~~kv-~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~ 225 (399)
T KOG0296|consen 164 ----------LAGSTDGSVWMWQ-IPSQ------ALCKV-MSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPL 225 (399)
T ss_pred ----------EeecCCCcEEEEE-CCCc------ceeeE-ecCCCCCcccccccCCCceEEEEecCceEEEEecCCCcee
Confidence 9999999999999 3221 11222 48999999999999999999999 9999999999988776
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE-
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD- 346 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~- 346 (514)
..+- -. ......++.++..+ ..++.|+.++.+++-+..+++.+. .+.+ ..+ ....++...+.+
T Consensus 226 ~~~~------~~-e~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgKVv~----~~n~-~~~---~l~~~~e~~~esv 289 (399)
T KOG0296|consen 226 HKIT------QA-EGLELPCISLNLAG-STLTKGNSEGVACGVNNGSGKVVN----CNNG-TVP---ELKPSQEELDESV 289 (399)
T ss_pred EEec------cc-ccCcCCcccccccc-ceeEeccCCccEEEEccccceEEE----ecCC-CCc---cccccchhhhhhh
Confidence 6541 11 14456788888888 889999999999999888887632 1111 111 111223334444
Q ss_pred --EEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEE
Q 010256 347 --IKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (514)
Q Consensus 347 --~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (514)
+.++..-.+.|+|+ ||+|.|||+.. .++...+ .|+.. |+.+.|-+ ..+|++++.+|.|+
T Consensus 290 e~~~~ss~lpL~A~G~vdG~i~iyD~a~-~~~R~~c-~he~~---------------V~~l~w~~-t~~l~t~c~~g~v~ 351 (399)
T KOG0296|consen 290 ESIPSSSKLPLAACGSVDGTIAIYDLAA-STLRHIC-EHEDG---------------VTKLKWLN-TDYLLTACANGKVR 351 (399)
T ss_pred hhcccccccchhhcccccceEEEEeccc-chhheec-cCCCc---------------eEEEEEcC-cchheeeccCceEE
Confidence 44554556667776 59999999985 4433333 34432 45899988 78899999999999
Q ss_pred EEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 424 VFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 424 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.||.++| ++..++.+|..+|..++++|++++++++|.|++.++
T Consensus 352 ~wDaRtG-~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~V 394 (399)
T KOG0296|consen 352 QWDARTG-QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALV 394 (399)
T ss_pred eeecccc-ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEE
Confidence 9999998 555899999999999999999999999999999888
No 25
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1e-35 Score=240.50 Aligned_cols=293 Identities=18% Similarity=0.238 Sum_probs=228.5
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
...++++|. +.|+.++..+. +...+++++.|.++.+|++.......
T Consensus 7 l~~tl~gh~------------d~Vt~la~~~~-~~~~l~sasrDk~ii~W~L~~dd~~~--------------------- 52 (315)
T KOG0279|consen 7 LRGTLEGHT------------DWVTALAIKIK-NSDILVSASRDKTIIVWKLTSDDIKY--------------------- 52 (315)
T ss_pred eeeeecCCC------------ceEEEEEeecC-CCceEEEcccceEEEEEEeccCcccc---------------------
Confidence 456789998 88999999765 45689999999999999987642100
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 251 (514)
+.+.+. +.+|...|..+..++||++.+++
T Consensus 53 --------------------------------------------------G~~~r~-~~GHsH~v~dv~~s~dg~~alS~ 81 (315)
T KOG0279|consen 53 --------------------------------------------------GVPVRR-LTGHSHFVSDVVLSSDGNFALSA 81 (315)
T ss_pred --------------------------------------------------Cceeee-eeccceEecceEEccCCceEEec
Confidence 112222 37899999999999999999999
Q ss_pred -cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
.|+++++||+.+++... .+.+|...|.+++|+||. +.+++|+.|.+|++|++..... ++....
T Consensus 82 swD~~lrlWDl~~g~~t~--------~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck-----~t~~~~-- 145 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGESTR--------RFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCK-----YTIHED-- 145 (315)
T ss_pred cccceEEEEEecCCcEEE--------EEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEE-----EEEecC--
Confidence 99999999999775443 578899999999999999 8999999999999999876432 111111
Q ss_pred CCccceeeccccceeEEEEecC--CCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEc
Q 010256 331 PGTRSFFTEIIASISDIKFARN--GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~--g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (514)
.+.+.|.++.|+|+ ..+|++++ |++|++||+++ .+....+.+|.+.+ +.+++|
T Consensus 146 --------~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~gh~~~v---------------~t~~vS 201 (315)
T KOG0279|consen 146 --------SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFIGHSGYV---------------NTVTVS 201 (315)
T ss_pred --------CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccccccccE---------------EEEEEC
Confidence 12478999999998 67788765 59999999997 88888898988764 389999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE--eeCCCCCccccCCccccc
Q 010256 408 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNSALDANGNAFDF 485 (514)
Q Consensus 408 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i--~~~~~~~~~~~~~~~~~~ 485 (514)
|||.++++|+.||.+.+||+..++. .....|...|.+++|+|+..+|+.+...+ |+| ++..... +++..+..+.
T Consensus 202 pDGslcasGgkdg~~~LwdL~~~k~--lysl~a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v-~~l~~d~~g~ 277 (315)
T KOG0279|consen 202 PDGSLCASGGKDGEAMLWDLNEGKN--LYSLEAFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVV-EELKLDGIGP 277 (315)
T ss_pred CCCCEEecCCCCceEEEEEccCCce--eEeccCCCeEeeEEecCCceeEeeccCCc-eEEEeccchhhh-hhcccccccc
Confidence 9999999999999999999998755 34557889999999999988887775444 888 2222211 1222222222
Q ss_pred -----ccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 486 -----SMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 486 -----~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
.-...+++|++||..|.++- ++.+.+|+
T Consensus 278 s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 278 SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 34558899999999999886 77788886
No 26
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-35 Score=270.91 Aligned_cols=413 Identities=14% Similarity=0.190 Sum_probs=293.0
Q ss_pred cccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
...+|...|+++.|+..|..||+|+.|+.|.+||+-... -+..++||+
T Consensus 102 tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~-----------------------Gl~rL~GHk--------- 149 (888)
T KOG0306|consen 102 TFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE-----------------------GLFRLRGHK--------- 149 (888)
T ss_pred eecccccceEEEEEcccCceEeecCCCccEEEEEeccce-----------------------eeEEeecch---------
Confidence 456899999999999999999999999999999987554 235689998
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccC--------------C
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA--------------I 175 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------------~ 175 (514)
+.|+..-|. ....++++.+.|+.|++||+.+..+..+...+. +.++...... -
T Consensus 150 ---d~iT~~~F~--~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r--------~Eiw~l~~~~~~lvt~~~dse~~v~ 216 (888)
T KOG0306|consen 150 ---DSITQALFL--NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHR--------GEIWALVLDEKLLVTAGTDSELKVW 216 (888)
T ss_pred ---HHHhHHhcc--CCCeEEEEeccCceEEEEecccceeeeEEeccc--------ceEEEEEEecceEEEEecCCceEEE
Confidence 889999994 445699999999999999999887665544332 2222100000 0
Q ss_pred ceeeccCC-------------Cccccc-------cCCCCCCcccCCCCCCcEEeceeecccc------------------
Q 010256 176 PKSYMANG-------------GCGERN-------FGCASNDSSFPPGGVSSLRLPVVVTSQE------------------ 217 (514)
Q Consensus 176 ~~~~~~~~-------------~~l~~~-------~~~~~~~~~~~~~~~~~i~i~~~~~~~~------------------ 217 (514)
.+++..|. ...... ....+.-+++.-+.|..+.++.+....+
T Consensus 217 ~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t 296 (888)
T KOG0306|consen 217 ELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAET 296 (888)
T ss_pred EeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccc
Confidence 12222222 111000 0011112333333333333333211000
Q ss_pred ----------------------------------------------------------cccccccc---ccccccCccCe
Q 010256 218 ----------------------------------------------------------TNLVAGCR---RIYAHAHDYHI 236 (514)
Q Consensus 218 ----------------------------------------------------------~~~~~~~~---~~~~~~h~~~v 236 (514)
.....++. ..-..+|...|
T Consensus 297 ~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dV 376 (888)
T KOG0306|consen 297 EENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDV 376 (888)
T ss_pred cccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhhe
Confidence 00000000 11236899999
Q ss_pred EEEEECCCCCEEEEecCCeEEEEeccCCCceeee----------------------------eccCC----CcccccCCc
Q 010256 237 NSISNNSDGETFISADDLRINLWNLEISNQSFNI----------------------------VDVKP----ANMEDLTEV 284 (514)
Q Consensus 237 ~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~----------------------------~~~~~----~~~~~~~~~ 284 (514)
++++++.+...+++|..+.+++|+..+.+....+ +++.. .+.+.|.+.
T Consensus 377 Rsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdga 456 (888)
T KOG0306|consen 377 RSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGA 456 (888)
T ss_pred eEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccc
Confidence 9999999999999999999999999865433221 11111 234678999
Q ss_pred eEEEEEecCCCcEEEEEecCCeEEEEEcCCCccc-cccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CC
Q 010256 285 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC-DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM 362 (514)
Q Consensus 285 i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~ 362 (514)
|.+++.+||+ ..+++|+.|.+|++||..--... ....+.+..++. ..-.....|.++.+||||++|+.+- |.
T Consensus 457 IWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~-----rtLel~ddvL~v~~Spdgk~LaVsLLdn 530 (888)
T KOG0306|consen 457 IWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT-----RTLELEDDVLCVSVSPDGKLLAVSLLDN 530 (888)
T ss_pred eeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccc-----eEEeccccEEEEEEcCCCcEEEEEeccC
Confidence 9999999999 89999999999999998532210 000111111110 0112235799999999999999984 69
Q ss_pred eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCc
Q 010256 363 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKN 442 (514)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 442 (514)
+++||-+++ -+..-++.+|.-+ |.++.+|||+++++|||.|..|++|-+.-|.+. +.+-+|.+
T Consensus 531 TVkVyflDt-lKFflsLYGHkLP---------------V~smDIS~DSklivTgSADKnVKiWGLdFGDCH-KS~fAHdD 593 (888)
T KOG0306|consen 531 TVKVYFLDT-LKFFLSLYGHKLP---------------VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH-KSFFAHDD 593 (888)
T ss_pred eEEEEEecc-eeeeeeecccccc---------------eeEEeccCCcCeEEeccCCCceEEeccccchhh-hhhhcccC
Confidence 999999998 8888888899866 459999999999999999999999999988665 78889999
Q ss_pred ceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 443 PMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 443 ~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
+|..+.|.|....+.++|.|+.|+-++|.+.. ......+|...|.+++.+|+|.++++++ +.++.+|.
T Consensus 594 Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe---~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE---EIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred ceeEEEEcccceeEEEecCcceEEeechhhhh---hheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999999999999999999997666543 4455667999999999999999999887 68888884
No 27
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-36 Score=268.65 Aligned_cols=282 Identities=15% Similarity=0.213 Sum_probs=242.4
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
..|++.|.|+.|+|...+++++-.+|.|.|||.++... ...++-.+
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm-----------------------VksfeV~~----------- 55 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM-----------------------VKSFEVSE----------- 55 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEeccccee-----------------------eeeeeecc-----------
Confidence 35889999999999999999999999999999987763 34455444
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
.+|.+..|.+..+ ++++|+.|..|++|+..+++....
T Consensus 56 -~PvRa~kfiaRkn--Wiv~GsDD~~IrVfnynt~ekV~~---------------------------------------- 92 (794)
T KOG0276|consen 56 -VPVRAAKFIARKN--WIVTGSDDMQIRVFNYNTGEKVKT---------------------------------------- 92 (794)
T ss_pred -cchhhheeeeccc--eEEEecCCceEEEEecccceeeEE----------------------------------------
Confidence 6788899976554 999999999999999988763322
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
+.+|.+.|++++.+|...+++++ +|-+|++||.+..-.+.
T Consensus 93 -------------------------------------FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~-- 133 (794)
T KOG0276|consen 93 -------------------------------------FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACE-- 133 (794)
T ss_pred -------------------------------------eeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeee--
Confidence 26788999999999999999999 99999999998554433
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
+++++|...|++++|+|...+.|++++-|++|++|.+.+... ..++.+|...|+++.+-
T Consensus 134 -----qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~----------------nfTl~gHekGVN~Vdyy 192 (794)
T KOG0276|consen 134 -----QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP----------------NFTLEGHEKGVNCVDYY 192 (794)
T ss_pred -----eEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC----------------ceeeeccccCcceEEec
Confidence 278999999999999999889999999999999999976543 23366777899999998
Q ss_pred cC--CCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 351 RN--GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 351 ~~--g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
+. ..+|++|+| .+++|||.++ ..+++++.+|...++ .++|+|.=.++++|+.||+++||+.
T Consensus 193 ~~gdkpylIsgaDD~tiKvWDyQt-k~CV~TLeGHt~Nvs---------------~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 193 TGGDKPYLISGADDLTIKVWDYQT-KSCVQTLEGHTNNVS---------------FVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred cCCCcceEEecCCCceEEEeecch-HHHHHHhhcccccce---------------EEEecCCCcEEEEecCCccEEEecC
Confidence 74 469999876 9999999998 999999999987654 8999999999999999999999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+- ++..++....+++++++..+..+.++.|...|.+.+
T Consensus 257 ~Ty-~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 257 KTY-KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cce-ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 876 444788888899999999999999999999998887
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2e-36 Score=278.49 Aligned_cols=272 Identities=20% Similarity=0.299 Sum_probs=219.0
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
...++|..|++|+++||.|-.|..|++|.+...+.. .
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~-------------------------------------------~ 414 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLK-------------------------------------------K 414 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhc-------------------------------------------c
Confidence 357999999999999999999999999998755421 1
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
+....+....+ +.+.|-.+.+-|............+ .++|+ ...|+|+.+.|
T Consensus 415 lk~~~~l~~~d-----~~sad~~~~~~D~~~~~~~~~L~GH--------~GPVy-------g~sFsPd~rfL-------- 466 (707)
T KOG0263|consen 415 LKDASDLSNID-----TESADVDVDMLDDDSSGTSRTLYGH--------SGPVY-------GCSFSPDRRFL-------- 466 (707)
T ss_pred ccchhhhcccc-----ccccchhhhhccccCCceeEEeecC--------CCcee-------eeeecccccce--------
Confidence 11111211111 2333333555555544433333333 47777 88999999999
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeecc
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
+++++|+++|+|. +. ...+...+ .+|..+|+++.|+|.|-+||++ .|++.++|........
T Consensus 467 ----lScSED~svRLWs-l~------t~s~~V~y-~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~Pl------ 528 (707)
T KOG0263|consen 467 ----LSCSEDSSVRLWS-LD------TWSCLVIY-KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPL------ 528 (707)
T ss_pred ----eeccCCcceeeee-cc------cceeEEEe-cCCCcceeeEEecCCceEEEecCCCceeeeeecccCCch------
Confidence 9999999999998 22 24455555 7999999999999999999999 9999999999865443
Q ss_pred CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 274 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
+.+.+|.+.|.|+.|+|+. +++++|+.|.++|+||..+|.. .+.|.||.++|.+++|||+|
T Consensus 529 --RifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~----------------VRiF~GH~~~V~al~~Sp~G 589 (707)
T KOG0263|consen 529 --RIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNS----------------VRIFTGHKGPVTALAFSPCG 589 (707)
T ss_pred --hhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcE----------------EEEecCCCCceEEEEEcCCC
Confidence 2578899999999999998 9999999999999999999876 24467788999999999999
Q ss_pred CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 354 RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 354 ~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
++|++|++ +.|.+||+.. ++++..+.+|.+. |.++.|+.||..||+|+.|++|++||+..-
T Consensus 590 r~LaSg~ed~~I~iWDl~~-~~~v~~l~~Ht~t---------------i~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 590 RYLASGDEDGLIKIWDLAN-GSLVKQLKGHTGT---------------IYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ceEeecccCCcEEEEEcCC-CcchhhhhcccCc---------------eeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999875 9999999998 8999999999665 349999999999999999999999998753
No 29
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.4e-36 Score=257.95 Aligned_cols=237 Identities=19% Similarity=0.267 Sum_probs=199.7
Q ss_pred cccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccc-cCCceEEEEEecCCCcEEEEEecCCe
Q 010256 229 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
+..|..+|+++.|++++.++++| .+|.|++|+....... .+.. |...|++++|+|+. ..|++++.||+
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk---------~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ 203 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK---------IIQAHHAEAIRDLAFSPND-SKFLTCSDDGT 203 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH---------HhhHhhhhhhheeccCCCC-ceeEEecCCCe
Confidence 47899999999999999999999 8999999998743322 2333 45899999999988 89999999999
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccc
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL 385 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~ 385 (514)
|+|||....+. ...+.+|.-.|.+++|+|...+|++|++ ..|++||.++ +.++.++..|...
T Consensus 204 ikiWdf~~~ke----------------e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS-g~cl~tlh~HKnt 266 (464)
T KOG0284|consen 204 IKIWDFRMPKE----------------ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-GSCLATLHGHKNT 266 (464)
T ss_pred EEEEeccCCch----------------hheeccCCCCcceeccCCccceeEEccCCceeEeecCCC-cchhhhhhhccce
Confidence 99999987553 2336778889999999999999999865 9999999998 9999999999876
Q ss_pred ccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCC-CCceeecCCCCe
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS-RPSRPLGSLSGV 464 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~s~d~~ 464 (514)
|+.+.|+|++++|+++|.|..++++|+++. +.+.++++|...++++.|+|- ..++++|+.||.
T Consensus 267 ---------------Vl~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 267 ---------------VLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred ---------------EEEEEEcCCCCeeEEccCCceEEEEehhHh-HHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence 459999999999999999999999999965 455899999999999999985 458899999999
Q ss_pred EEE--eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEec-CcEEEE
Q 010256 465 VRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-NSLYMY 512 (514)
Q Consensus 465 v~i--~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~-~~~~i~ 512 (514)
|.. +...+ .+......|...|.+++|+|=|.+|++|+. ..+.+|
T Consensus 331 vvh~~v~~~~----p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw 377 (464)
T KOG0284|consen 331 VVHWVVGLEE----PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFW 377 (464)
T ss_pred eEEEeccccc----cccCCCcccccceeeeeccccceeEeecCCCcceeee
Confidence 998 22122 233334469999999999999999999994 455555
No 30
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.4e-36 Score=274.02 Aligned_cols=302 Identities=16% Similarity=0.231 Sum_probs=232.8
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..++|..| ++++.++|.|..|..|++|.+...+++.+.....-...
T Consensus 379 ~~v~ca~f--SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~-------------------------------- 424 (707)
T KOG0263|consen 379 QGVTCAEF--SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNI-------------------------------- 424 (707)
T ss_pred CcceeEee--cCCcchhhccccccEEEEEecchhhhccccchhhhccc--------------------------------
Confidence 67999999 67888999999999999999987654443322110000
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
=+.+.|-.+.+.| .+. ....+. +.+|.++|....|+|+.++|+++ .|+++|+|.+.+....+
T Consensus 425 ------d~~sad~~~~~~D----~~~---~~~~~~-L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V--- 487 (707)
T KOG0263|consen 425 ------DTESADVDVDMLD----DDS---SGTSRT-LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV--- 487 (707)
T ss_pred ------cccccchhhhhcc----ccC---CceeEE-eecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---
Confidence 0111111122211 111 111122 48999999999999999999999 89999999999765544
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
...+|..+|..+.|+|.| .+||+++.|++-++|....... .+.+.+|.+.|.|++|+|
T Consensus 488 -----~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~P----------------lRifaghlsDV~cv~FHP 545 (707)
T KOG0263|consen 488 -----IYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKP----------------LRIFAGHLSDVDCVSFHP 545 (707)
T ss_pred -----EecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCc----------------hhhhcccccccceEEECC
Confidence 467999999999999999 9999999999999999876443 244667779999999999
Q ss_pred CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
+..|+++|+ |.+|++||+.+ +..++.+.+|... |++++|||+|++|++|+.||.|++||+.++
T Consensus 546 Ns~Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~---------------V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 546 NSNYVATGSSDRTVRLWDVST-GNSVRIFTGHKGP---------------VTALAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred cccccccCCCCceEEEEEcCC-CcEEEEecCCCCc---------------eEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence 999999986 49999999998 9999999999876 449999999999999999999999999987
Q ss_pred ceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCcc---------------------ccCCcccccccce
Q 010256 431 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL---------------------DANGNAFDFSMKL 489 (514)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~---------------------~~~~~~~~~~~~v 489 (514)
.+...+.+|++.|.++.|+.+|..||+|+.|.+|++++-...... .+.+........|
T Consensus 610 -~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv 688 (707)
T KOG0263|consen 610 -SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPV 688 (707)
T ss_pred -cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceE
Confidence 455889999999999999999999999999999999222211110 1122223345677
Q ss_pred EEEEEcCCCCEEEEE
Q 010256 490 LHLAWHPSENSIACA 504 (514)
Q Consensus 490 ~~~~~spd~~~l~~~ 504 (514)
..+.|......|++|
T Consensus 689 ~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 689 VGLHFTRRNLLLAVG 703 (707)
T ss_pred EEEEEeccceeEEec
Confidence 888887777555554
No 31
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-34 Score=246.40 Aligned_cols=283 Identities=18% Similarity=0.341 Sum_probs=230.7
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
.|.+.|.-+.||++|+|||+++.|.+..||++.... ..+...++.+|.
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~--------------------~~kl~~tlvgh~------------ 269 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV--------------------HFKLKKTLVGHS------------ 269 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc--------------------ceeeeeeeeccc------------
Confidence 799999999999999999999999999999986544 245778899998
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
.+|..|.| +||+++|++++.|..+++||+.+|......
T Consensus 270 ~~V~yi~w--SPDdryLlaCg~~e~~~lwDv~tgd~~~~y---------------------------------------- 307 (519)
T KOG0293|consen 270 QPVSYIMW--SPDDRYLLACGFDEVLSLWDVDTGDLRHLY---------------------------------------- 307 (519)
T ss_pred CceEEEEE--CCCCCeEEecCchHheeeccCCcchhhhhc----------------------------------------
Confidence 89999999 667789999999999999999988632211
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
..+|...+.+.+|.|||..+++| .|+++..||++ +....
T Consensus 308 ------------------------------------~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~--- 347 (519)
T KOG0293|consen 308 ------------------------------------PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILG--- 347 (519)
T ss_pred ------------------------------------ccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhh---
Confidence 12344678899999999999999 89999999998 33221
Q ss_pred ccCCCccccc-CCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 272 DVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 272 ~~~~~~~~~~-~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
..++. ...|.+++..+|| ..+++.+.|..|++|+.++.... .....+ .+|+++..|
T Consensus 348 -----~W~gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr----~lise~-------------~~its~~iS 404 (519)
T KOG0293|consen 348 -----NWEGVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDR----GLISEE-------------QPITSFSIS 404 (519)
T ss_pred -----cccccccceeEEEEEcCCC-cEEEEEecccceeeechhhhhhh----cccccc-------------CceeEEEEc
Confidence 22222 3568999999999 88888889999999998775431 112221 579999999
Q ss_pred cCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC-CCCEEEEEeCCCcEEEEecC
Q 010256 351 RNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 351 ~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~ 428 (514)
.+++++++. .+..+++||++. .+.+..+.+|....- +..-||-- +..++++||.|+.|+||+..
T Consensus 405 ~d~k~~LvnL~~qei~LWDl~e-~~lv~kY~Ghkq~~f-------------iIrSCFgg~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 405 KDGKLALVNLQDQEIHLWDLEE-NKLVRKYFGHKQGHF-------------IIRSCFGGGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred CCCcEEEEEcccCeeEEeecch-hhHHHHhhcccccce-------------EEEeccCCCCcceEEecCCCceEEEEEcc
Confidence 999999986 558999999995 888888988875432 22445643 55799999999999999999
Q ss_pred CCceeeeeecCCCcceeEEEECCCCC-ceeecCCCCeEEE
Q 010256 429 EGSAESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 467 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~v~i 467 (514)
++ ++..++.||...|+.++++|..+ ++|++|.||+|||
T Consensus 471 sg-kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRI 509 (519)
T KOG0293|consen 471 SG-KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRI 509 (519)
T ss_pred CC-ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEE
Confidence 88 56689999999999999999765 6899999999999
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6e-35 Score=244.55 Aligned_cols=277 Identities=17% Similarity=0.247 Sum_probs=231.3
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
.+|+.+-|+|. -..+++++.|++|++||..++++..
T Consensus 109 ~~vt~v~~hp~--~~~v~~as~d~tikv~D~~tg~~e~------------------------------------------ 144 (406)
T KOG0295|consen 109 SSVTRVIFHPS--EALVVSASEDATIKVFDTETGELER------------------------------------------ 144 (406)
T ss_pred cceeeeeeccC--ceEEEEecCCceEEEEEccchhhhh------------------------------------------
Confidence 88999999654 4488889999999999999886311
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
.+.+|...+.+++|+..|++++++ .|-.+++||.++...+.+
T Consensus 145 -----------------------------------~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k-- 187 (406)
T KOG0295|consen 145 -----------------------------------SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIK-- 187 (406)
T ss_pred -----------------------------------hhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHH--
Confidence 147898999999999999999999 888899999985444332
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.+.+|...|.++.|-|.| .++++++.|.+|+.|++.++.. +++ +.+|...|..++.+.
T Consensus 188 -----s~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~c----v~t------------~~~h~ewvr~v~v~~ 245 (406)
T KOG0295|consen 188 -----SLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYC----VKT------------FPGHSEWVRMVRVNQ 245 (406)
T ss_pred -----HhcCcccceeeEEEEecC-CeeeecccccceeEEeccccee----EEe------------ccCchHhEEEEEecC
Confidence 567899999999999999 9999999999999999999987 333 555668999999999
Q ss_pred CCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC---------------CCEEEE
Q 010256 352 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD---------------GGRVAT 415 (514)
Q Consensus 352 ~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~s 415 (514)
||.++++++. .+|++|-+.+ +.+...+..|+..+. +++|.|. +.++++
T Consensus 246 DGti~As~s~dqtl~vW~~~t-~~~k~~lR~hEh~vE---------------ci~wap~~~~~~i~~at~~~~~~~~l~s 309 (406)
T KOG0295|consen 246 DGTIIASCSNDQTLRVWVVAT-KQCKAELREHEHPVE---------------CIAWAPESSYPSISEATGSTNGGQVLGS 309 (406)
T ss_pred CeeEEEecCCCceEEEEEecc-chhhhhhhccccceE---------------EEEecccccCcchhhccCCCCCccEEEe
Confidence 9999999865 9999999998 888888888887754 5555442 358999
Q ss_pred EeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEc
Q 010256 416 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWH 495 (514)
Q Consensus 416 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s 495 (514)
++.|++|++||+.++.++ .++.+|.+.|+.++|+|.|+||+|+.+|+++++ |.+...........|..-|++++|+
T Consensus 310 ~SrDktIk~wdv~tg~cL-~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrv---wdl~~~~cmk~~~ah~hfvt~lDfh 385 (406)
T KOG0295|consen 310 GSRDKTIKIWDVSTGMCL-FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRV---WDLKNLQCMKTLEAHEHFVTSLDFH 385 (406)
T ss_pred ecccceEEEEeccCCeEE-EEEecccceeeeeEEcCCCeEEEEEecCCcEEE---EEeccceeeeccCCCcceeEEEecC
Confidence 999999999999999655 799999999999999999999999999999999 3332222333344689999999999
Q ss_pred CCCCEEEEEe-cCcEEEE
Q 010256 496 PSENSIACAA-SNSLYMY 512 (514)
Q Consensus 496 pd~~~l~~~~-~~~~~i~ 512 (514)
.+..++++|+ +..+.+|
T Consensus 386 ~~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVW 403 (406)
T ss_pred CCCceEEeccccceeeee
Confidence 9999999999 5555565
No 33
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.2e-33 Score=223.93 Aligned_cols=291 Identities=15% Similarity=0.261 Sum_probs=225.3
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
....+++|. +.+..++|+|.. |..|++++.|+.|++|+...+....
T Consensus 6 ~~~~~~gh~------------~r~W~~awhp~~-g~ilAscg~Dk~vriw~~~~~~s~~--------------------- 51 (312)
T KOG0645|consen 6 LEQKLSGHK------------DRVWSVAWHPGK-GVILASCGTDKAVRIWSTSSGDSWT--------------------- 51 (312)
T ss_pred eEEeecCCC------------CcEEEEEeccCC-ceEEEeecCCceEEEEecCCCCcEE---------------------
Confidence 445678888 889999997632 6799999999999999987432100
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 251 (514)
++..+-.+|+..|++++|+|.|++|++|
T Consensus 52 ----------------------------------------------------ck~vld~~hkrsVRsvAwsp~g~~La~a 79 (312)
T KOG0645|consen 52 ----------------------------------------------------CKTVLDDGHKRSVRSVAWSPHGRYLASA 79 (312)
T ss_pred ----------------------------------------------------EEEeccccchheeeeeeecCCCcEEEEe
Confidence 1111226788999999999999999999
Q ss_pred -cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
-|.++.||.-..+.-. .+ .++++|...|.+++|+++| ++||+++.|+.|-||.+..+... +.
T Consensus 80 SFD~t~~Iw~k~~~efe--cv----~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEf-------ec--- 142 (312)
T KOG0645|consen 80 SFDATVVIWKKEDGEFE--CV----ATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEF-------EC--- 142 (312)
T ss_pred eccceEEEeecCCCcee--EE----eeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcE-------EE---
Confidence 8999999987643322 11 2789999999999999999 99999999999999999754431 11
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccC--CCCceeeeeeccccccccccccccCCccceeeEEEc
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM--DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (514)
...+++|...|..+.|+|...+|++++. .+|++|+-.. .-.+.+++.+|... |++++|+
T Consensus 143 ---~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~T---------------VW~~~F~ 204 (312)
T KOG0645|consen 143 ---IAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENT---------------VWSLAFD 204 (312)
T ss_pred ---EeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccce---------------EEEEEec
Confidence 2357788899999999999999999886 9999998763 23467888888753 6799999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEee-CCCCCccc--cCC-ccc
Q 010256 408 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK-GADNSALD--ANG-NAF 483 (514)
Q Consensus 408 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~-~~~~~~~~--~~~-~~~ 483 (514)
+.|..|++++.|+.++||...+. .-..|..+++.+.|. ...|++++.|+.+++.. ...+.... +.. ...
T Consensus 205 ~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~ 277 (312)
T KOG0645|consen 205 NIGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEG 277 (312)
T ss_pred CCCceEEEecCCcceEeeeeccC-----cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhc
Confidence 99999999999999999997643 223467788889998 66899999999999932 22222111 111 223
Q ss_pred ccccceEEEEEcCC-CCEEEEEecCcEE
Q 010256 484 DFSMKLLHLAWHPS-ENSIACAASNSLY 510 (514)
Q Consensus 484 ~~~~~v~~~~~spd-~~~l~~~~~~~~~ 510 (514)
.|...|++++|.|. .++|+++++++++
T Consensus 278 aHe~dVNsV~w~p~~~~~L~s~~DDG~v 305 (312)
T KOG0645|consen 278 AHEVDVNSVQWNPKVSNRLASGGDDGIV 305 (312)
T ss_pred ccccccceEEEcCCCCCceeecCCCceE
Confidence 58889999999995 7788888866654
No 34
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.8e-34 Score=269.59 Aligned_cols=288 Identities=23% Similarity=0.425 Sum_probs=236.9
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
.|...|+|+.|+++|++|++++.++.+++|+..+.+. .....+.+|.
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------------~~~~~l~~h~------------ 203 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------------NLLRELSGHT------------ 203 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------------hhhccccccc------------
Confidence 3478999999999999999999999999999865541 1334557787
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCcc-EEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..|++++| ++++.++++++.|++|++||+... ....
T Consensus 204 ~~v~~~~f--s~d~~~l~s~s~D~tiriwd~~~~~~~~~----------------------------------------- 240 (456)
T KOG0266|consen 204 RGVSDVAF--SPDGSYLLSGSDDKTLRIWDLKDDGRNLK----------------------------------------- 240 (456)
T ss_pred cceeeeEE--CCCCcEEEEecCCceEEEeeccCCCeEEE-----------------------------------------
Confidence 88999999 667789999999999999999432 2211
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
. +.+|...|++++|+|+++.+++| .|++|++||+++++...
T Consensus 241 -----------------------------------~-l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~-- 282 (456)
T KOG0266|consen 241 -----------------------------------T-LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR-- 282 (456)
T ss_pred -----------------------------------E-ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE--
Confidence 1 36899999999999999999999 99999999999754432
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
.+.+|.+.|++++|++++ ++|++++.|+.|++||+.++... ....+...+. .. +++++.|+
T Consensus 283 ------~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~---------~~-~~~~~~fs 343 (456)
T KOG0266|consen 283 ------KLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKL--CLKLLSGAEN---------SA-PVTSVQFS 343 (456)
T ss_pred ------eeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCcee--eeecccCCCC---------CC-ceeEEEEC
Confidence 578899999999999999 89999999999999999998731 0222222221 11 59999999
Q ss_pred cCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 351 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 351 ~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
|++++++++.. +.+++||+.. ...+..+.+|.... ..+++...++.+.++++|+.|+.|++|++.+
T Consensus 344 p~~~~ll~~~~d~~~~~w~l~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 344 PNGKYLLSASLDRTLKLWDLRS-GKSVGTYTGHSNLV------------RCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred CCCcEEEEecCCCeEEEEEccC-CcceeeecccCCcc------------eeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 99999999865 8999999997 88888888887541 1123566688999999999999999999998
Q ss_pred CceeeeeecCC-CcceeEEEECCCCCceeecC--CCCeEEE
Q 010256 430 GSAESTTLEAS-KNPMRRQVQTPSRPSRPLGS--LSGVVRR 467 (514)
Q Consensus 430 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~s--~d~~v~i 467 (514)
+ .....+++| ...+..+.++|..+++++++ .|+.+++
T Consensus 411 ~-~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~ 450 (456)
T KOG0266|consen 411 G-GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRL 450 (456)
T ss_pred c-chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEE
Confidence 6 455889999 88999999999999999998 6888887
No 35
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-33 Score=256.64 Aligned_cols=387 Identities=14% Similarity=0.183 Sum_probs=287.9
Q ss_pred cccccccchhhccccCcc-cccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccc
Q 010256 12 AQPLEWKFSQVFGERTAG-EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (514)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (514)
+.-..|++.. |+.... ........|+|++-+|+.-+||.|..||.|+||+..++.
T Consensus 43 E~vn~WdlRt--ge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~---------------------- 98 (888)
T KOG0306|consen 43 EQVNIWDLRT--GEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEE---------------------- 98 (888)
T ss_pred ccEeEEeeec--chhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCc----------------------
Confidence 3455688877 322111 112333589999999999999999999999999988664
Q ss_pred eeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecc
Q 010256 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (514)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (514)
...++.||. ..|+.+.| ...|..|++|+.|+.|.+||+-...-......+. ..+.
T Consensus 99 -~~~tfngHK------------~AVt~l~f--d~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHk--------d~iT-- 153 (888)
T KOG0306|consen 99 -ILITFNGHK------------AAVTTLKF--DKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHK--------DSIT-- 153 (888)
T ss_pred -eeeeecccc------------cceEEEEE--cccCceEeecCCCccEEEEEeccceeeEEeecch--------HHHh--
Confidence 446789998 89999999 7788899999999999999997765444444331 2222
Q ss_pred cccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEE
Q 010256 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 250 (514)
...|..+.+.+ ++.+.|+.|++|| +.. ..|..+. -.|.+.++++++.+ +.+++
T Consensus 154 -----~~~F~~~~~~l------------vS~sKDs~iK~Wd-L~t------qhCf~Th-vd~r~Eiw~l~~~~--~~lvt 206 (888)
T KOG0306|consen 154 -----QALFLNGDSFL------------VSVSKDSMIKFWD-LET------QHCFETH-VDHRGEIWALVLDE--KLLVT 206 (888)
T ss_pred -----HHhccCCCeEE------------EEeccCceEEEEe-ccc------ceeeeEE-ecccceEEEEEEec--ceEEE
Confidence 33444445555 9999999999999 332 3344443 68899999999988 66777
Q ss_pred e-cCCeEEEEeccCC-----------------------------------------------------------------
Q 010256 251 A-DDLRINLWNLEIS----------------------------------------------------------------- 264 (514)
Q Consensus 251 ~-~d~~i~iwd~~~~----------------------------------------------------------------- 264 (514)
+ .|+.+++|++...
T Consensus 207 ~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk 286 (888)
T KOG0306|consen 207 AGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKK 286 (888)
T ss_pred EecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHH
Confidence 6 9999999998210
Q ss_pred ----------------------------------------------Cce----------eee--ec--cCC---------
Q 010256 265 ----------------------------------------------NQS----------FNI--VD--VKP--------- 275 (514)
Q Consensus 265 ----------------------------------------------~~~----------~~~--~~--~~~--------- 275 (514)
... ... ++ .++
T Consensus 287 ~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~ 366 (888)
T KOG0306|consen 287 LKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSN 366 (888)
T ss_pred HHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccce
Confidence 000 000 00 011
Q ss_pred CcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCE
Q 010256 276 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 355 (514)
Q Consensus 276 ~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 355 (514)
-.+.+|...|++++++.+. ..+++| ..+.+++|+..+.++ ++++.. +.+.+..|-|.+++
T Consensus 367 i~~~GHR~dVRsl~vS~d~-~~~~Sg-a~~SikiWn~~t~kc----iRTi~~--------------~y~l~~~Fvpgd~~ 426 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDS-ILLASG-AGESIKIWNRDTLKC----IRTITC--------------GYILASKFVPGDRY 426 (888)
T ss_pred eeeccchhheeEEEeecCc-eeeeec-CCCcEEEEEccCcce----eEEecc--------------ccEEEEEecCCCce
Confidence 2346788899999999886 455544 467999999998876 455544 46889999999999
Q ss_pred EEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC-----
Q 010256 356 ILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE----- 429 (514)
Q Consensus 356 l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~----- 429 (514)
++.|.+ |.+.+||+.. ...+.+.+.|++. +++++.+||++.+++||.|.+|++||..-
T Consensus 427 Iv~G~k~Gel~vfdlaS-~~l~Eti~AHdga---------------IWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~ 490 (888)
T KOG0306|consen 427 IVLGTKNGELQVFDLAS-ASLVETIRAHDGA---------------IWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP 490 (888)
T ss_pred EEEeccCCceEEEEeeh-hhhhhhhhccccc---------------eeeeeecCCCCceEEecCCcEEEEEeEEEEeccC
Confidence 999987 9999999997 8888888888876 56999999999999999999999999742
Q ss_pred Cce-eeeeec-----CCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEE
Q 010256 430 GSA-ESTTLE-----ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC 503 (514)
Q Consensus 430 ~~~-~~~~~~-----~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~ 503 (514)
+.+ ....+. .-.+.|.++.+|||+++||.+=.|.+|+++--..+ .+....++|.-+|++++.|||+++|++
T Consensus 491 gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl---KFflsLYGHkLPV~smDIS~DSklivT 567 (888)
T KOG0306|consen 491 GTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL---KFFLSLYGHKLPVLSMDISPDSKLIVT 567 (888)
T ss_pred cccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce---eeeeeecccccceeEEeccCCcCeEEe
Confidence 111 101111 22467889999999999999999999999211111 234456679999999999999999998
Q ss_pred Ee-cCcEEEEe
Q 010256 504 AA-SNSLYMYY 513 (514)
Q Consensus 504 ~~-~~~~~i~~ 513 (514)
++ +.++.+|-
T Consensus 568 gSADKnVKiWG 578 (888)
T KOG0306|consen 568 GSADKNVKIWG 578 (888)
T ss_pred ccCCCceEEec
Confidence 87 88899983
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=222.09 Aligned_cols=286 Identities=16% Similarity=0.292 Sum_probs=221.5
Q ss_pred cccccceEEEEEcCC-CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeee-ccCCCcccccccc
Q 010256 32 VQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKSL 109 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~-g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~ 109 (514)
-+|.+.|..++|+|- |..||+++.|..|+||+...+. .+.....+ .+|.
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------------s~~ck~vld~~hk--------- 61 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------------SWTCKTVLDDGHK--------- 61 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------------cEEEEEeccccch---------
Confidence 478999999999998 8999999999999999987422 11222222 3566
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.+++| +|.|++|++++.|.++.||.-..++...+.
T Consensus 62 ---rsVRsvAw--sp~g~~La~aSFD~t~~Iw~k~~~efecv~------------------------------------- 99 (312)
T KOG0645|consen 62 ---RSVRSVAW--SPHGRYLASASFDATVVIWKKEDGEFECVA------------------------------------- 99 (312)
T ss_pred ---heeeeeee--cCCCcEEEEeeccceEEEeecCCCceeEEe-------------------------------------
Confidence 88999999 567789999999999999987765533321
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
+ +.||...|.+++|+++|++||++ .|+.|-||.+.... .+
T Consensus 100 -------------------------------------~-lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd-Ef 140 (312)
T KOG0645|consen 100 -------------------------------------T-LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD-EF 140 (312)
T ss_pred -------------------------------------e-eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC-cE
Confidence 1 47899999999999999999999 99999999998433 33
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
... ..+++|...|..+.|+|.. .+|++++.|.+|++|+-..+.. .. ....+.+|.+.|.+++
T Consensus 141 ec~----aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~ddd-W~------------c~~tl~g~~~TVW~~~ 202 (312)
T KOG0645|consen 141 ECI----AVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDD-WE------------CVQTLDGHENTVWSLA 202 (312)
T ss_pred EEE----eeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCC-ee------------EEEEecCccceEEEEE
Confidence 322 2578899999999999998 8999999999999998763221 11 1234667778999999
Q ss_pred EecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 349 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 349 ~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
|++.|..|+++++ ++++||.... .- -..|... ++.++|. ...|++++.|+.|++|.-
T Consensus 203 F~~~G~rl~s~sdD~tv~Iw~~~~-~~----~~~~sr~---------------~Y~v~W~--~~~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 203 FDNIGSRLVSCSDDGTVSIWRLYT-DL----SGMHSRA---------------LYDVPWD--NGVIASGGGDDAIRLFKE 260 (312)
T ss_pred ecCCCceEEEecCCcceEeeeecc-Cc----chhcccc---------------eEeeeec--ccceEeccCCCEEEEEEe
Confidence 9999999999876 9999998653 10 0111111 2378887 457999999999999987
Q ss_pred CCCc--e----eeeeecCCCcceeEEEECCC-CCceeecCCCCeEEE
Q 010256 428 SEGS--A----ESTTLEASKNPMRRQVQTPS-RPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~--~----~~~~~~~~~~~v~~~~~~~~-~~~l~s~s~d~~v~i 467 (514)
...- . ....-..|...|+++.+.|. ...|++++.||.+++
T Consensus 261 s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~ 307 (312)
T KOG0645|consen 261 SDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNF 307 (312)
T ss_pred cCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEE
Confidence 6421 1 11233478889999999994 779999999999998
No 37
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.5e-34 Score=251.09 Aligned_cols=292 Identities=21% Similarity=0.319 Sum_probs=235.6
Q ss_pred cccccccccceEEEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccc
Q 010256 28 AGEEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (514)
Q Consensus 28 ~~~~~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (514)
.....+|+..|+++.|.| .+.+|++++.|+.|+||++-+.+ ++++++.+|.
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~----------------------~~lrtf~gH~------ 258 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR----------------------RCLRTFKGHR------ 258 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc----------------------ceehhhhcch------
Confidence 334679999999999999 89999999999999999987533 3778999999
Q ss_pred cccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCC-Cc
Q 010256 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG-GC 185 (514)
Q Consensus 107 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~ 185 (514)
.+|.+++| +.+|..|++++.|+.|++||+++|++...+.....+. ++.|.|++ +.
T Consensus 259 ------k~Vrd~~~--s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~----------------cvkf~pd~~n~ 314 (503)
T KOG0282|consen 259 ------KPVRDASF--NNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT----------------CVKFHPDNQNI 314 (503)
T ss_pred ------hhhhhhhc--cccCCeeeeeecceeeeeeccccceEEEEEecCCCce----------------eeecCCCCCcE
Confidence 99999999 6788999999999999999999999888777653322 77899998 44
Q ss_pred cccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCC
Q 010256 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~ 264 (514)
+ ++|+.|+.|+.|| +...+ ..+.+ ..|-+.|..+.|-++|..++++ +|+++++|+.+.+
T Consensus 315 f------------l~G~sd~ki~~wD-iRs~k------vvqeY-d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 315 F------------LVGGSDKKIRQWD-IRSGK------VVQEY-DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIP 374 (503)
T ss_pred E------------EEecCCCcEEEEe-ccchH------HHHHH-HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCC
Confidence 4 9999999999999 44433 33343 6788999999999999999999 9999999999865
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
-....+ .........++..+|++ .+++.-+.|..|.+|.+...-.. ...+.|+++..+ +.-
T Consensus 375 v~ik~i-------~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~r~-nkkK~feGh~va----------Gys 435 (503)
T KOG0282|consen 375 VPIKNI-------ADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPFRL-NKKKRFEGHSVA----------GYS 435 (503)
T ss_pred ccchhh-------cchhhccCcceecCCCC-CeehhhccCceEEEEeccccccc-CHhhhhcceecc----------Cce
Confidence 443222 22234556789999999 89999999999999987543221 113344444322 456
Q ss_pred eEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC-CEEEEEeCCCcE
Q 010256 345 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLF 422 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i 422 (514)
..+.|||||++|++|+. |.+.+||.++ .+.+..++.|.... +.+.|+|.. ..+|+++.||.|
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt-~kl~~~lkah~~~c---------------i~v~wHP~e~Skvat~~w~G~I 499 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKT-TKLVSKLKAHDQPC---------------IGVDWHPVEPSKVATCGWDGLI 499 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechh-hhhhhccccCCcce---------------EEEEecCCCcceeEecccCcee
Confidence 77999999999999965 9999999998 89999999997653 378999965 579999999999
Q ss_pred EEEe
Q 010256 423 RVFG 426 (514)
Q Consensus 423 ~iwd 426 (514)
++|+
T Consensus 500 kiwd 503 (503)
T KOG0282|consen 500 KIWD 503 (503)
T ss_pred EecC
Confidence 9996
No 38
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.9e-34 Score=236.29 Aligned_cols=294 Identities=15% Similarity=0.251 Sum_probs=239.1
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.++..+.+.|..|||||+||++|+.||.|.+||..+++..... .|+....|.-++
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDL---------------kYQAqd~fMMmd---------- 263 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDL---------------KYQAQDNFMMMD---------- 263 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhh---------------hhhhhcceeecc----------
Confidence 3456788999999999999999999999999999988853111 111122344455
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|.|+.| +.|..++++|+.||.|++|.+++|.
T Consensus 264 --~aVlci~F--SRDsEMlAsGsqDGkIKvWri~tG~------------------------------------------- 296 (508)
T KOG0275|consen 264 --DAVLCISF--SRDSEMLASGSQDGKIKVWRIETGQ------------------------------------------- 296 (508)
T ss_pred --cceEEEee--cccHHHhhccCcCCcEEEEEEecch-------------------------------------------
Confidence 88999999 6788899999999999999998875
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
|.+.|..+|+..|.|+.|+.|+..++++ .|.++++.-+..++...
T Consensus 297 ---------------------------------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK- 342 (508)
T KOG0275|consen 297 ---------------------------------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK- 342 (508)
T ss_pred ---------------------------------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH-
Confidence 2333446899999999999999999998 89999999999776553
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+.+|...|+...|.++| +.+++++.||+|++|+..+.++ ..+|+... ...+|.++..
T Consensus 343 -------EfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC----~~Tfk~~~----------~d~~vnsv~~ 400 (508)
T KOG0275|consen 343 -------EFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTEC----LSTFKPLG----------TDYPVNSVIL 400 (508)
T ss_pred -------HhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchhh----hhhccCCC----------CcccceeEEE
Confidence 578999999999999999 8999999999999999999876 34444322 1246888887
Q ss_pred ecC-CCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 350 ARN-GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 350 s~~-g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
-|. -..++.+.. .+|.|.++. ++.+.++........ +..+++.||.|.++.+.+.|+.++-|..
T Consensus 401 ~PKnpeh~iVCNrsntv~imn~q--GQvVrsfsSGkREgG------------dFi~~~lSpkGewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 401 LPKNPEHFIVCNRSNTVYIMNMQ--GQVVRSFSSGKREGG------------DFINAILSPKGEWIYCIGEDGVLYCFSV 466 (508)
T ss_pred cCCCCceEEEEcCCCeEEEEecc--ceEEeeeccCCccCC------------ceEEEEecCCCcEEEEEccCcEEEEEEe
Confidence 774 456666655 899999987 788888765443221 1237889999999999999999999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+| .+..++..|...+-.++-+|..+.||+-++||.+++
T Consensus 467 ~sG-~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKL 505 (508)
T KOG0275|consen 467 LSG-KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKL 505 (508)
T ss_pred ecC-ceeeeeecccccccccccCcccchhhhhcccchhhh
Confidence 988 455899999999999999999999999999999887
No 39
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.5e-33 Score=218.13 Aligned_cols=265 Identities=17% Similarity=0.309 Sum_probs=213.7
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
-.|+++|.++.|+-||+|.++++.|.+|++|+...+. +++++.+|.
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-----------------------liktYsghG----------- 59 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-----------------------LIKTYSGHG----------- 59 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccccc-----------------------eeeeecCCC-----------
Confidence 4688999999999999999999999999999976555 668899998
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..|..++. +.|...|++++.|+.+.+||+.+|+....
T Consensus 60 -~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr---------------------------------------- 96 (307)
T KOG0316|consen 60 -HEVLDAAL--SSDNSKFASCGGDKAVQVWDVNTGKVDRR---------------------------------------- 96 (307)
T ss_pred -ceeeeccc--cccccccccCCCCceEEEEEcccCeeeee----------------------------------------
Confidence 67999988 56667899999999999999999874321
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
+.+|.+.|+.+.|+.+...+++| -|.++++||-+......-
T Consensus 97 -------------------------------------~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePi- 138 (307)
T KOG0316|consen 97 -------------------------------------FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPI- 138 (307)
T ss_pred -------------------------------------cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCcc-
Confidence 26888999999999999999999 899999999985442211
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
+.+....+.|.++.... ..|++|+.||++|.||++.|.+.. .+- ..+|+++.|+
T Consensus 139 -----Qildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~s----Dy~--------------g~pit~vs~s 192 (307)
T KOG0316|consen 139 -----QILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSS----DYF--------------GHPITSVSFS 192 (307)
T ss_pred -----chhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeeh----hhc--------------CCcceeEEec
Confidence 24556678899998865 579999999999999999988631 111 2589999999
Q ss_pred cCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 351 ~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
++++..++++ ++++++.|-.+ ++.++.+++|..... ...++++.....+++|+.||.|++||+..
T Consensus 193 ~d~nc~La~~l~stlrLlDk~t-GklL~sYkGhkn~ey-------------kldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 193 KDGNCSLASSLDSTLRLLDKET-GKLLKSYKGHKNMEY-------------KLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred CCCCEEEEeeccceeeecccch-hHHHHHhccccccee-------------eeeeeecccceeEEeccCCceEEEEEecc
Confidence 9999988876 59999999998 999999999987543 22678888888999999999999999987
Q ss_pred CceeeeeecCCCcc-eeEEEECCC
Q 010256 430 GSAESTTLEASKNP-MRRQVQTPS 452 (514)
Q Consensus 430 ~~~~~~~~~~~~~~-v~~~~~~~~ 452 (514)
... ...++.+... +..+.++|.
T Consensus 259 ~~~-~sk~~~~~~v~v~dl~~hp~ 281 (307)
T KOG0316|consen 259 ETQ-ISKLSVVSTVIVTDLSCHPT 281 (307)
T ss_pred cee-eeeeccCCceeEEeeecccC
Confidence 633 3444444333 344444443
No 40
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.9e-33 Score=232.08 Aligned_cols=295 Identities=14% Similarity=0.247 Sum_probs=244.5
Q ss_pred cccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCcccc
Q 010256 83 SMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAA 162 (514)
Q Consensus 83 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 162 (514)
...|+..+++.+.+.+|. +.|.++++- |-.++|++|+.|++|+|||+.+++++..
T Consensus 134 rPeWHapwKl~rVi~gHl------------gWVr~vavd--P~n~wf~tgs~DrtikIwDlatg~Lklt----------- 188 (460)
T KOG0285|consen 134 RPEWHAPWKLYRVISGHL------------GWVRSVAVD--PGNEWFATGSADRTIKIWDLATGQLKLT----------- 188 (460)
T ss_pred CccccCcceehhhhhhcc------------ceEEEEeeC--CCceeEEecCCCceeEEEEcccCeEEEe-----------
Confidence 345777888889999998 999999995 4457999999999999999999875432
Q ss_pred CCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEEC
Q 010256 163 GNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN 242 (514)
Q Consensus 163 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 242 (514)
+.+|...|..++++
T Consensus 189 ------------------------------------------------------------------ltGhi~~vr~vavS 202 (460)
T KOG0285|consen 189 ------------------------------------------------------------------LTGHIETVRGVAVS 202 (460)
T ss_pred ------------------------------------------------------------------ecchhheeeeeeec
Confidence 35777889999999
Q ss_pred CCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccc
Q 010256 243 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 321 (514)
Q Consensus 243 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 321 (514)
+...++.++ .|+.|+.||++..+... .+.+|-..|.+++.+|.- ..|++|+.|..+|+||+|+...+
T Consensus 203 ~rHpYlFs~gedk~VKCwDLe~nkvIR--------~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V--- 270 (460)
T KOG0285|consen 203 KRHPYLFSAGEDKQVKCWDLEYNKVIR--------HYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASV--- 270 (460)
T ss_pred ccCceEEEecCCCeeEEEechhhhhHH--------HhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceE---
Confidence 999999999 99999999999655432 578899999999999998 89999999999999999997652
Q ss_pred ccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccc
Q 010256 322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 400 (514)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
..+.+|..+|.++.+.|-...+++|+ |++|++||++. ++...++..|...+
T Consensus 271 -------------~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a-gkt~~tlt~hkksv-------------- 322 (460)
T KOG0285|consen 271 -------------HVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA-GKTMITLTHHKKSV-------------- 322 (460)
T ss_pred -------------EEecCCCCcceeEEeecCCCceEEecCCceEEEeeecc-CceeEeeeccccee--------------
Confidence 33677889999999999777788876 69999999997 99999998887653
Q ss_pred eeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE---eeCCCCCcc-
Q 010256 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR---VKGADNSAL- 476 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i---~~~~~~~~~- 476 (514)
.+++.+|....+|+++.| .|+-|++..+... +.+.+|..-++.+....|+ ++++|+++|.+.+ ..|.+....
T Consensus 323 -ral~lhP~e~~fASas~d-nik~w~~p~g~f~-~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~ 398 (460)
T KOG0285|consen 323 -RALCLHPKENLFASASPD-NIKQWKLPEGEFL-QNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQ 398 (460)
T ss_pred -eEEecCCchhhhhccCCc-cceeccCCccchh-hccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccccc
Confidence 389999999999999887 5899999988544 5699999999999988774 7789999999988 334444422
Q ss_pred -ccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEE
Q 010256 477 -DANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMY 512 (514)
Q Consensus 477 -~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~ 512 (514)
....-.++.+..|++.+|...|..|+++. ++.+.+|
T Consensus 399 t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ 436 (460)
T KOG0285|consen 399 TIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMY 436 (460)
T ss_pred ccccCCccccccceeEEeecccCceEEeccCCcceEEE
Confidence 12233445678999999999999988775 7777777
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.6e-32 Score=245.42 Aligned_cols=280 Identities=24% Similarity=0.401 Sum_probs=228.2
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
.+|.++|++++|+|++++|++++.||.|++|++.+++ ....+..|.
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-----------------------~~~~~~~~~----------- 51 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----------------------LLRTLKGHT----------- 51 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-----------------------cEEEEecCC-----------
Confidence 3789999999999999999999999999999987654 234556676
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..+..+.|+ ++++++++++.|+.|++|++.+++....
T Consensus 52 -~~i~~~~~~--~~~~~l~~~~~~~~i~i~~~~~~~~~~~---------------------------------------- 88 (289)
T cd00200 52 -GPVRDVAAS--ADGTYLASGSSDKTIRLWDLETGECVRT---------------------------------------- 88 (289)
T ss_pred -cceeEEEEC--CCCCEEEEEcCCCeEEEEEcCcccceEE----------------------------------------
Confidence 778899995 5557999999999999999986531111
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
+..|...+.++.|++++++++++ .++.|++||+++.+...
T Consensus 89 -------------------------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-- 129 (289)
T cd00200 89 -------------------------------------LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT-- 129 (289)
T ss_pred -------------------------------------EeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE--
Confidence 13455689999999999999988 69999999998554433
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
.+..|...+.++.|+|++ .++++++.++.|++||+++++.. .. +..|...+.++.|+
T Consensus 130 ------~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~----~~------------~~~~~~~i~~~~~~ 186 (289)
T cd00200 130 ------TLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCV----AT------------LTGHTGEVNSVAFS 186 (289)
T ss_pred ------EeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccc----ee------------EecCccccceEEEC
Confidence 334678889999999997 78888888999999999876542 22 23445689999999
Q ss_pred cCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 351 ~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
|+++.+++++ ++.|++||+.. ++.+..+..|... +.+++|+|++.++++++.||.|++|++.+
T Consensus 187 ~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 187 PDGEKLLSSSSDGTIKLWDLST-GKCLGTLRGHENG---------------VNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred CCcCEEEEecCCCcEEEEECCC-CceecchhhcCCc---------------eEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 9998888865 59999999986 6777766555533 34899999999999888899999999987
Q ss_pred CceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 430 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 430 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+. ....+..|...+..+.++|+++++++++.|+.+++
T Consensus 251 ~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 287 (289)
T cd00200 251 GE-CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287 (289)
T ss_pred ce-eEEEccccCCcEEEEEECCCCCEEEEecCCCeEEe
Confidence 64 44677789999999999999999999999999987
No 42
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.3e-34 Score=227.42 Aligned_cols=281 Identities=14% Similarity=0.231 Sum_probs=238.8
Q ss_pred cccccccceEEEEEcC---CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccc
Q 010256 30 EEVQEVDIISAIEFDK---SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~---~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (514)
.-.+|+.+|-.++||| +|-+|++++.||.-.+-+-+++. .+.+|.||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgd-----------------------wigtfeghk------ 59 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGD-----------------------WIGTFEGHK------ 59 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCC-----------------------cEEeeeccC------
Confidence 4568999999999997 89999999999988887777666 558899999
Q ss_pred cccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 107 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
+.|.+... +.+...-++++.|-+-++||.-+|....
T Consensus 60 ------gavw~~~l--~~na~~aasaaadftakvw~a~tgdelh------------------------------------ 95 (334)
T KOG0278|consen 60 ------GAVWSATL--NKNATRAASAAADFTAKVWDAVTGDELH------------------------------------ 95 (334)
T ss_pred ------cceeeeec--Cchhhhhhhhcccchhhhhhhhhhhhhh------------------------------------
Confidence 88999888 5666677788999999999987664211
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCC
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~ 265 (514)
...|+..|.+++|+.|.++|++| .+..+|+||++..+
T Consensus 96 ------------------------------------------sf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~ 133 (334)
T KOG0278|consen 96 ------------------------------------------SFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK 133 (334)
T ss_pred ------------------------------------------hhhhhheeeeEEecccchhhhccchHHHhhhhhccCCC
Confidence 14577789999999999999999 99999999998665
Q ss_pred ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccccee
Q 010256 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (514)
.. |..+.+|.+.|..+.|.... +.|++.+.|++||+||.+++.. +++++.. .+|+
T Consensus 134 Ap-------p~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~----v~sL~~~-------------s~Vt 188 (334)
T KOG0278|consen 134 AP-------PKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTE----VQSLEFN-------------SPVT 188 (334)
T ss_pred CC-------chhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcE----EEEEecC-------------CCCc
Confidence 43 34678999999999998877 7888889999999999999987 3444433 5799
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEE
Q 010256 346 DIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (514)
Q Consensus 346 ~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (514)
++.++++|++|..+..+.|.+||.++ ..+++.+..... |.+...+|+...+++|+.|..++.|
T Consensus 189 SlEvs~dG~ilTia~gssV~Fwdaks-f~~lKs~k~P~n----------------V~SASL~P~k~~fVaGged~~~~kf 251 (334)
T KOG0278|consen 189 SLEVSQDGRILTIAYGSSVKFWDAKS-FGLLKSYKMPCN----------------VESASLHPKKEFFVAGGEDFKVYKF 251 (334)
T ss_pred ceeeccCCCEEEEecCceeEEecccc-ccceeeccCccc----------------cccccccCCCceEEecCcceEEEEE
Confidence 99999999999998878999999997 777777766543 3378899999999999999999999
Q ss_pred ecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 426 GCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 426 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|..++..+....++|.++|.++.|+|+|...|+||+||+||+
T Consensus 252 Dy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 252 DYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred eccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEE
Confidence 999996664446899999999999999999999999999999
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-32 Score=252.66 Aligned_cols=295 Identities=16% Similarity=0.223 Sum_probs=239.2
Q ss_pred cccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
.+..|..++|+|...+++++-..|.|++||..-+. ++..|..|+ +
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-----------------------li~rFdeHd------------G 52 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-----------------------LIDRFDEHD------------G 52 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhh-----------------------HHhhhhccC------------C
Confidence 35789999999999999999999999999987655 446688888 9
Q ss_pred ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
+|..++|+|..+ ++++|+.|..|++|+..+.++...
T Consensus 53 pVRgv~FH~~qp--lFVSGGDDykIkVWnYk~rrclft------------------------------------------ 88 (1202)
T KOG0292|consen 53 PVRGVDFHPTQP--LFVSGGDDYKIKVWNYKTRRCLFT------------------------------------------ 88 (1202)
T ss_pred ccceeeecCCCC--eEEecCCccEEEEEecccceehhh------------------------------------------
Confidence 999999976554 999999999999999987653211
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeec
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 272 (514)
+.+|-+.|+.+.|++.-.+|+++ +|.+|+||+..+.+...
T Consensus 89 -----------------------------------L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~ia---- 129 (1202)
T KOG0292|consen 89 -----------------------------------LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIA---- 129 (1202)
T ss_pred -----------------------------------hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEE----
Confidence 37888999999999999999999 99999999999665443
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccccee-------------ccCCCCccceeec
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE-------------EQEAPGTRSFFTE 339 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~ 339 (514)
.+.+|...|+|..|+|.. .+++++|-|.+||+||+..-+.....--.++ +..+..-..++.|
T Consensus 130 ----vltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG 204 (1202)
T KOG0292|consen 130 ----VLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG 204 (1202)
T ss_pred ----EEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc
Confidence 578999999999999988 8999999999999999975332111000010 0011112346789
Q ss_pred cccceeEEEEecCCCEEEEEeC-CeEEEEEccCC-CCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe
Q 010256 340 IIASISDIKFARNGRHILSRDY-MTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (514)
Q Consensus 340 ~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (514)
|...|+-++|+|.-.++++|+| ..|++|.+... .-.+.+..+|...+ .++-|+|..++|++.+
T Consensus 205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnV---------------ssvlfhp~q~lIlSns 269 (1202)
T KOG0292|consen 205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNV---------------SSVLFHPHQDLILSNS 269 (1202)
T ss_pred cccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCc---------------ceEEecCccceeEecC
Confidence 9999999999999999999876 99999998741 23466777777654 3999999999999999
Q ss_pred CCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 418 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 418 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.|++|+|||+.... ..++++...++.+.++.+|..+++|.|-..|.+-.
T Consensus 270 EDksirVwDm~kRt-~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VF 318 (1202)
T KOG0292|consen 270 EDKSIRVWDMTKRT-SVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVF 318 (1202)
T ss_pred CCccEEEEeccccc-ceeeeeccCCeEEEEEecCCcceeeeecCCceEEE
Confidence 99999999998763 44788878889999999999999998877776655
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.7e-31 Score=268.91 Aligned_cols=254 Identities=23% Similarity=0.353 Sum_probs=191.0
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
...|.+.|++++|+|+|++||+|+.|+.|+||+.......+.. .......+.++
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~---------------~~~~~~~~~~~----------- 532 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD---------------IHYPVVELASR----------- 532 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc---------------cccceEEeccc-----------
Confidence 4468999999999999999999999999999997542110000 00011122222
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++|++ ..+.+|++++.||+|++||+.+++....
T Consensus 533 --~~v~~l~~~~-~~~~~las~~~Dg~v~lWd~~~~~~~~~--------------------------------------- 570 (793)
T PLN00181 533 --SKLSGICWNS-YIKSQVASSNFEGVVQVWDVARSQLVTE--------------------------------------- 570 (793)
T ss_pred --CceeeEEecc-CCCCEEEEEeCCCeEEEEECCCCeEEEE---------------------------------------
Confidence 5689999975 3456899999999999999987653211
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
+.+|...|.+++|+| ++.+|++| .|++|++||++++....
T Consensus 571 --------------------------------------~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 571 --------------------------------------MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred --------------------------------------ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 256888999999997 78899999 89999999998654432
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
. +. +...+.++.|++..+.+|++|+.||.|++||+++.... . ..+.+|...|.++.
T Consensus 613 ~--------~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~---~------------~~~~~h~~~V~~v~ 668 (793)
T PLN00181 613 T--------IK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP---L------------CTMIGHSKTVSYVR 668 (793)
T ss_pred E--------Ee-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc---c------------eEecCCCCCEEEEE
Confidence 2 22 23578999996543389999999999999999875421 1 12456778999999
Q ss_pred EecCCCEEEEEe-CCeEEEEEccCC-----CCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcE
Q 010256 349 FARNGRHILSRD-YMTLKLWDINMD-----SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (514)
Q Consensus 349 ~s~~g~~l~~~~-~~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (514)
|. ++.+|++++ |++|++||+... ..++..+.+|...+ ..++|+|++++|++|+.|+.|
T Consensus 669 f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i---------------~~v~~s~~~~~lasgs~D~~v 732 (793)
T PLN00181 669 FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK---------------NFVGLSVSDGYIATGSETNEV 732 (793)
T ss_pred Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCe---------------eEEEEcCCCCEEEEEeCCCEE
Confidence 97 677888865 599999999742 24567777776542 379999999999999999999
Q ss_pred EEEecCCC
Q 010256 423 RVFGCSEG 430 (514)
Q Consensus 423 ~iwd~~~~ 430 (514)
++|+....
T Consensus 733 ~iw~~~~~ 740 (793)
T PLN00181 733 FVYHKAFP 740 (793)
T ss_pred EEEECCCC
Confidence 99998654
No 45
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.8e-32 Score=222.15 Aligned_cols=278 Identities=17% Similarity=0.261 Sum_probs=225.2
Q ss_pred CcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC
Q 010256 164 NGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS 243 (514)
Q Consensus 164 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 243 (514)
.+.|+ .+.|.|+|.++ ++++.|..|.+|++ ...+... .. +.+|++.|..+.|.+
T Consensus 47 ~geI~-------~~~F~P~gs~~------------aSgG~Dr~I~LWnv-~gdceN~-----~~-lkgHsgAVM~l~~~~ 100 (338)
T KOG0265|consen 47 KGEIY-------TIKFHPDGSCF------------ASGGSDRAIVLWNV-YGDCENF-----WV-LKGHSGAVMELHGMR 100 (338)
T ss_pred cceEE-------EEEECCCCCeE------------eecCCcceEEEEec-cccccce-----ee-eccccceeEeeeecc
Confidence 46677 88999999999 99999999999993 3322211 11 379999999999999
Q ss_pred CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccc
Q 010256 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (514)
Q Consensus 244 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 322 (514)
|+..++++ .|.+++.||+++++... .+.+|...+.++.-+.-|..++.+++.|+++++||+|+... +
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~~r--------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~----~ 168 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKRIR--------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA----I 168 (338)
T ss_pred CCCEEEEecCCceEEEEecccceeee--------hhccccceeeecCccccCCeEEEecCCCceEEEEeecccch----h
Confidence 99999999 99999999999887664 56789999999986667777889999999999999998765 4
Q ss_pred cceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccce
Q 010256 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (514)
++++.+ ..++++.|...+..+.+|. |+.|++||++. ...+.++.+|... |
T Consensus 169 ~t~~~k-------------yqltAv~f~d~s~qv~sggIdn~ikvWd~r~-~d~~~~lsGh~Dt---------------I 219 (338)
T KOG0265|consen 169 KTFENK-------------YQLTAVGFKDTSDQVISGGIDNDIKVWDLRK-NDGLYTLSGHADT---------------I 219 (338)
T ss_pred hccccc-------------eeEEEEEecccccceeeccccCceeeecccc-CcceEEeecccCc---------------e
Confidence 444433 4689999999998888875 69999999997 8899999999876 4
Q ss_pred eeEEEcCCCCEEEEEeCCCcEEEEecCCC---ceeeeeecCCCcc----eeEEEECCCCCceeecCCCCeEEEeeCCCCC
Q 010256 402 FECCLSGDGGRVATGSYSNLFRVFGCSEG---SAESTTLEASKNP----MRRQVQTPSRPSRPLGSLSGVVRRVKGADNS 474 (514)
Q Consensus 402 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~----v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~ 474 (514)
+.+..+++|.++.+-+-|.++++||++.. +.....+.+|.-. .-...|+|++.++..|+.|+.+.+++....
T Consensus 220 t~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r- 298 (338)
T KOG0265|consen 220 TGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR- 298 (338)
T ss_pred eeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc-
Confidence 48999999999999999999999998753 2334566665432 346788999999999999999999443322
Q ss_pred ccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEE
Q 010256 475 ALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYM 511 (514)
Q Consensus 475 ~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i 511 (514)
.+.....+|.+.|++++|+|...+|..++ ++.+|+
T Consensus 299 --~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 299 --RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred --cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 23344557999999999999999998666 555543
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.9e-32 Score=255.51 Aligned_cols=282 Identities=19% Similarity=0.316 Sum_probs=225.1
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.++.| +++|..+++++.|+.+++|+....+. .
T Consensus 160 ~sv~~~~f--s~~g~~l~~~~~~~~i~~~~~~~~~~------~------------------------------------- 194 (456)
T KOG0266|consen 160 PSVTCVDF--SPDGRALAAASSDGLIRIWKLEGIKS------N------------------------------------- 194 (456)
T ss_pred CceEEEEE--cCCCCeEEEccCCCcEEEeecccccc------h-------------------------------------
Confidence 77888999 67788899999999999998854431 0
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
..+. +.+|...|++++|+|++++++++ .|++|++||+.......+
T Consensus 195 -------------------------------~~~~-l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~-- 240 (456)
T KOG0266|consen 195 -------------------------------LLRE-LSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK-- 240 (456)
T ss_pred -------------------------------hhcc-ccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEE--
Confidence 0011 26788999999999999999999 999999999954444433
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
++.+|...|++++|+|++ +++++|+.|++|++||+++++.. + .+.+|...|++++|++
T Consensus 241 -----~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~----~------------~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 241 -----TLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECV----R------------KLKGHSDGISGLAFSP 298 (456)
T ss_pred -----EecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEE----E------------eeeccCCceEEEEECC
Confidence 578999999999999999 99999999999999999997762 2 3566778999999999
Q ss_pred CCCEEEEEe-CCeEEEEEccCCCC--ceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 352 NGRHILSRD-YMTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
++.+|++++ |+.|+|||+.+ +. ++..+..+.... .+..++|+|++++|+++..|+.+++||+.
T Consensus 299 d~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~~~~~~~~-------------~~~~~~fsp~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 299 DGNLLVSASYDGTIRVWDLET-GSKLCLKLLSGAENSA-------------PVTSVQFSPNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred CCCEEEEcCCCccEEEEECCC-CceeeeecccCCCCCC-------------ceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence 999999987 49999999997 55 455665555431 14489999999999999999999999999
Q ss_pred CCceeeeeecCCCcc---eeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccccc-ccceEEEEEcCCCCEEEEE
Q 010256 429 EGSAESTTLEASKNP---MRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF-SMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~-~~~v~~~~~spd~~~l~~~ 504 (514)
.+... ..+.+|... +.+...++.++++++|+.|+.|++.+-. ..........| ...+..++|+|..++++++
T Consensus 365 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~---s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~ 440 (456)
T KOG0266|consen 365 SGKSV-GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS---SGGILQRLEGHSKAAVSDLSSHPTENLIASS 440 (456)
T ss_pred CCcce-eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCC---ccchhhhhcCCCCCceeccccCCCcCeeeec
Confidence 87444 677777664 4455568899999999999999993222 11222334457 8899999999999999988
Q ss_pred e---cCcEEEEe
Q 010256 505 A---SNSLYMYY 513 (514)
Q Consensus 505 ~---~~~~~i~~ 513 (514)
+ +..+.+|.
T Consensus 441 s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 441 SFEGDGLIRLWK 452 (456)
T ss_pred CcCCCceEEEec
Confidence 7 66677774
No 47
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=7.1e-32 Score=227.44 Aligned_cols=300 Identities=18% Similarity=0.286 Sum_probs=234.8
Q ss_pred cCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccc
Q 010256 26 RTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (514)
Q Consensus 26 ~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (514)
+.+.+.+.|.+.|+++... ++++++|+.||.++||+.... ....+.||.
T Consensus 96 P~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk------------------------~~~~~~Ght----- 144 (423)
T KOG0313|consen 96 PKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK------------------------SIKTIVGHT----- 144 (423)
T ss_pred CCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCc------------------------eEEEEecCC-----
Confidence 3445678899999999988 789999999999999997543 346788998
Q ss_pred ccccccccceeEEEEeeCC-CCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCC
Q 010256 106 LKSLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (514)
Q Consensus 106 ~~~~~~~~~v~~i~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 184 (514)
++|.+++|.... ....|++++.|.++++|.++.++....
T Consensus 145 -------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~--------------------------------- 184 (423)
T KOG0313|consen 145 -------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK--------------------------------- 184 (423)
T ss_pred -------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh---------------------------------
Confidence 889988886432 234699999999999999887642110
Q ss_pred ccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccC
Q 010256 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 263 (514)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 263 (514)
+... ..||...|.+++..++|..+++| .|.+|++|+..+
T Consensus 185 ---------------------------------------~~~~-~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~ 224 (423)
T KOG0313|consen 185 ---------------------------------------ALKV-CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVET 224 (423)
T ss_pred ---------------------------------------HHhH-hcccccceeEEEecCCCCeEEeecccceeeecccCC
Confidence 0000 14999999999999999999999 899999999332
Q ss_pred CCc-eeeeec----------------cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccccee
Q 010256 264 SNQ-SFNIVD----------------VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 264 ~~~-~~~~~~----------------~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
... ..+-.. ....++.+|..+|.++.|++. ..+++++.|.+|+.||+.++..... +.
T Consensus 225 ~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~----~~ 298 (423)
T KOG0313|consen 225 DEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKST----LT 298 (423)
T ss_pred CccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceee----ee
Confidence 110 000000 011357899999999999994 5899999999999999999886422 22
Q ss_pred ccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCC--ceeeeeeccccccccccccccCCccceee
Q 010256 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
.. ..+.++..+|..++|++|+ |..+++||.+++.. ...++.+|...+. +
T Consensus 299 ~~-------------ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVs---------------s 350 (423)
T KOG0313|consen 299 TN-------------KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVS---------------S 350 (423)
T ss_pred cC-------------cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhh---------------h
Confidence 22 4689999999999999975 59999999987432 4567888888754 8
Q ss_pred EEEcCCCCE-EEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCC
Q 010256 404 CCLSGDGGR-VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 471 (514)
Q Consensus 404 ~~~s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~ 471 (514)
+.|+|...+ |++|+.|+++++||+++.+..+..+.+|.+.|.++.|. ++.++++|+.|.++++.++.
T Consensus 351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 999997764 77999999999999998865668899999999999986 45689999999999994443
No 48
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.7e-32 Score=238.34 Aligned_cols=289 Identities=21% Similarity=0.349 Sum_probs=223.9
Q ss_pred eeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccc
Q 010256 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (514)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (514)
...+.+|. ..|+++.|.|. .+.+|++++.|+.|+||++...
T Consensus 207 ~~~~~gH~------------kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~-------------------------- 247 (503)
T KOG0282|consen 207 SHNLSGHT------------KGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDD-------------------------- 247 (503)
T ss_pred eeeccCCc------------cccchhhhccc-eeeEEEecCCCceEEEEEEecC--------------------------
Confidence 35677887 88999999763 4678999999999999998652
Q ss_pred cCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-
Q 010256 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 251 (514)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~- 251 (514)
..++++| .+|..+|.+++|+++|..|+++
T Consensus 248 -------------------------------------------------~~~lrtf-~gH~k~Vrd~~~s~~g~~fLS~s 277 (503)
T KOG0282|consen 248 -------------------------------------------------RRCLRTF-KGHRKPVRDASFNNCGTSFLSAS 277 (503)
T ss_pred -------------------------------------------------cceehhh-hcchhhhhhhhccccCCeeeeee
Confidence 1133444 7999999999999999999999
Q ss_pred cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCC
Q 010256 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (514)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 331 (514)
-|+.|++||+++++...++ .....++++.|+|++++.|++|..|+.|+.||+|+++.+. .
T Consensus 278 fD~~lKlwDtETG~~~~~f---------~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq----e------- 337 (503)
T KOG0282|consen 278 FDRFLKLWDTETGQVLSRF---------HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ----E------- 337 (503)
T ss_pred cceeeeeeccccceEEEEE---------ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH----H-------
Confidence 8999999999988776543 1356688999999998999999999999999999998742 2
Q ss_pred CccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC
Q 010256 332 GTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (514)
Q Consensus 332 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (514)
+..|-+.|..+.|-++|+.+++.+| +.++||+.+. ..++.....+.... .-++..+|++
T Consensus 338 -----Yd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~-~v~ik~i~~~~~hs--------------mP~~~~~P~~ 397 (503)
T KOG0282|consen 338 -----YDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRI-PVPIKNIADPEMHT--------------MPCLTLHPNG 397 (503)
T ss_pred -----HHhhhhheeeeEEccCCceEeeeccCccEEEEEcCC-Cccchhhcchhhcc--------------CcceecCCCC
Confidence 3345578999999999999999876 9999999987 44443332221110 1189999999
Q ss_pred CEEEEEeCCCcEEEEecCCCce--eeeeecCCCcc--eeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccc
Q 010256 411 GRVATGSYSNLFRVFGCSEGSA--ESTTLEASKNP--MRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFS 486 (514)
Q Consensus 411 ~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~ 486 (514)
++++.-+.|+.|.+|.+...-+ ....+++|..+ -..+.|||||.+|++|+.||.+.+++.. ...+....-.|.
T Consensus 398 ~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwk---t~kl~~~lkah~ 474 (503)
T KOG0282|consen 398 KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWK---TTKLVSKLKAHD 474 (503)
T ss_pred CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeech---hhhhhhccccCC
Confidence 9999999999999998764322 22667888655 4467899999999999999999993322 112333444588
Q ss_pred cceEEEEEcCCCC-EEEEEe-cCcEEEEe
Q 010256 487 MKLLHLAWHPSEN-SIACAA-SNSLYMYY 513 (514)
Q Consensus 487 ~~v~~~~~spd~~-~l~~~~-~~~~~i~~ 513 (514)
..+..+.|+|-.. .+|+++ ++.+.+|.
T Consensus 475 ~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 475 QPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999854 466666 67777773
No 49
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=7e-32 Score=236.21 Aligned_cols=309 Identities=18% Similarity=0.259 Sum_probs=230.3
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
..|+..|+++++.|.|..|++|+.|..|++||+...... .+.++.+.-...|
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas----------------~~~fr~l~P~E~h------------ 215 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS----------------MRSFRQLQPCETH------------ 215 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEeccccccc----------------chhhhccCccccc------------
Confidence 467889999999999999999999999999998765431 0111222222334
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
.|++++|+ +.|..|++.+.....+|+|-...+........ +++
T Consensus 216 --~i~sl~ys--~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGD----------------------------QYI----- 258 (641)
T KOG0772|consen 216 --QINSLQYS--VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGD----------------------------QYI----- 258 (641)
T ss_pred --ccceeeec--CCCCeEEEEecCcceeEEccCCceeeeeeccc----------------------------hhh-----
Confidence 49999995 46668888888889999997766543322211 111
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC-CEEEEe-cCCeEEEEeccCCCceee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
-| .. ...||...++|.+|+|+. +.++++ .||++++||++..+....
T Consensus 259 ------------------~D----m~----------nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 259 ------------------RD----MY----------NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred ------------------hh----hh----------ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 11 00 137999999999999984 456666 999999999998776666
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccc--ceeEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA--SISDI 347 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~ 347 (514)
++..+ ...+..-.+++++|+|++ .+||+|+.||.|.+|+....... +... +-..|.. .|++|
T Consensus 307 Vik~k--~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~--p~~~-----------vk~AH~~g~~Itsi 370 (641)
T KOG0772|consen 307 VIKTK--PAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVR--PVMK-----------VKDAHLPGQDITSI 370 (641)
T ss_pred EEeec--cCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccc--cceE-----------eeeccCCCCceeEE
Confidence 54333 334567788999999999 89999999999999998553321 1111 1234544 89999
Q ss_pred EEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC------CC
Q 010256 348 KFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY------SN 420 (514)
Q Consensus 348 ~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg 420 (514)
.||+||++|++. .|+++++||++...+++.+..+-... +.-+.++|||+.++|++|+. .|
T Consensus 371 ~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~-------------~~~tdc~FSPd~kli~TGtS~~~~~~~g 437 (641)
T KOG0772|consen 371 SFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTP-------------FPGTDCCFSPDDKLILTGTSAPNGMTAG 437 (641)
T ss_pred EeccccchhhhccCCCceeeeeccccccchhhhcCCCcc-------------CCCCccccCCCceEEEecccccCCCCCc
Confidence 999999999994 56999999999877777666543321 12237999999999999863 47
Q ss_pred cEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 421 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+.+||..+. .....+......|..+.|+|.-+.|..|+.||++++
T Consensus 438 ~L~f~d~~t~-d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~v 483 (641)
T KOG0772|consen 438 TLFFFDRMTL-DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHV 483 (641)
T ss_pred eEEEEeccce-eeEEEecCCCceEEEEeecchhhheeeecCCCceEE
Confidence 8999998876 344666677888999999999999999999999999
No 50
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-31 Score=210.83 Aligned_cols=286 Identities=17% Similarity=0.230 Sum_probs=223.6
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|..+++-+.++.+|++|.+++.|..+.+|-..+++ .+.++.||.
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-----------------------rlGty~GHt---------- 52 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-----------------------RLGTYDGHT---------- 52 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-----------------------eeeeecCCC----------
Confidence 45899999999999999999999999999999987776 457899999
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|.++.. +.+.+++++|+.|.++++||+++|+.......+
T Consensus 53 --GavW~~Di--d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~----------------------------------- 93 (327)
T KOG0643|consen 53 --GAVWCCDI--DWDSKHLITGSADQTAKLWDVETGKQLATWKTN----------------------------------- 93 (327)
T ss_pred --ceEEEEEe--cCCcceeeeccccceeEEEEcCCCcEEEEeecC-----------------------------------
Confidence 99999998 566779999999999999999999865544432
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-c-----CCeEEEEeccCC
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-----DLRINLWNLEIS 264 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~-----d~~i~iwd~~~~ 264 (514)
.+|..+.|+++|++++.+ + .+.|.++|++..
T Consensus 94 -------------------------------------------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~ 130 (327)
T KOG0643|consen 94 -------------------------------------------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDD 130 (327)
T ss_pred -------------------------------------------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCC
Confidence 457788899998887765 3 578999999843
Q ss_pred CceeeeeccCC-CcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccc
Q 010256 265 NQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (514)
Q Consensus 265 ~~~~~~~~~~~-~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (514)
..... .-.| ..+..+...++.+.|.|-+ ..|++|..||.|..||.++++.. +. ....|...
T Consensus 131 ~~~~~--s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~---v~------------s~~~h~~~ 192 (327)
T KOG0643|consen 131 SSDID--SEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKEL---VD------------SDEEHSSK 192 (327)
T ss_pred hhhhc--ccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCcee---ee------------chhhhccc
Confidence 21100 0000 1334567889999999999 89999999999999999998653 11 13446679
Q ss_pred eeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcE
Q 010256 344 ISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (514)
Q Consensus 344 i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (514)
|+.++++||..++++++ |.+-++||+.+ -..++++..... |.+.+++|....++.|+.....
T Consensus 193 Ind~q~s~d~T~FiT~s~Dttakl~D~~t-l~v~Kty~te~P----------------vN~aaisP~~d~VilgGGqeA~ 255 (327)
T KOG0643|consen 193 INDLQFSRDRTYFITGSKDTTAKLVDVRT-LEVLKTYTTERP----------------VNTAAISPLLDHVILGGGQEAM 255 (327)
T ss_pred cccccccCCcceEEecccCccceeeeccc-eeeEEEeeeccc----------------ccceecccccceEEecCCceee
Confidence 99999999999999986 49999999997 777777765543 2388999987777765532211
Q ss_pred --------------EEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 423 --------------RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 423 --------------~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
++|++-. +.+...+++|.+||++++|+|+|+..+||++||.||+
T Consensus 256 dVTTT~~r~GKFEArFyh~i~-eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 256 DVTTTSTRAGKFEARFYHLIF-EEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRL 313 (327)
T ss_pred eeeeecccccchhhhHHHHHH-HHHhccccccccCcceeEECCCCcccccCCCCceEEE
Confidence 1222211 1233567799999999999999999999999999999
No 51
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=1.6e-31 Score=219.49 Aligned_cols=312 Identities=16% Similarity=0.235 Sum_probs=234.3
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
...|+.++.+.+|||||.++|||+.|-.|+|.|++..-....++...... .-+. +..++++-.|.
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~--~qa~---hPvIRTlYDH~---------- 172 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGD--TQAR---HPVIRTLYDHV---------- 172 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCC--cccC---CceEeehhhcc----------
Confidence 34799999999999999999999999999999987332211111111100 0111 23666777787
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|+++.|+|. ..+|++++.|++|+++|+.....++..
T Consensus 173 --devn~l~FHPr--e~ILiS~srD~tvKlFDfsK~saKrA~-------------------------------------- 210 (430)
T KOG0640|consen 173 --DEVNDLDFHPR--ETILISGSRDNTVKLFDFSKTSAKRAF-------------------------------------- 210 (430)
T ss_pred --Ccccceeecch--hheEEeccCCCeEEEEecccHHHHHHH--------------------------------------
Confidence 88999999664 459999999999999998754211110
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+. .....+|.++.|+|.|.+|+.| +..++++||+++.+....
T Consensus 211 -----------------------------------K~--~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 211 -----------------------------------KV--FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred -----------------------------------HH--hhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence 00 1223679999999999999999 889999999997654332
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
- . .-..|.+.|+++.+++.+ ++.++|+.||.|++||--++++ +.++..... ...|++..|
T Consensus 254 a---n--Pd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rC----v~t~~~AH~----------gsevcSa~F 313 (430)
T KOG0640|consen 254 A---N--PDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRC----VRTIGNAHG----------GSEVCSAVF 313 (430)
T ss_pred c---C--cccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHH----HHHHHhhcC----------CceeeeEEE
Confidence 1 1 335689999999999999 8999999999999999887776 444443221 257999999
Q ss_pred ecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe-CCCcEEEEec
Q 010256 350 ARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGC 427 (514)
Q Consensus 350 s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~ 427 (514)
..+|+|+++. -|..+++|.+.+ ++++.++.+........ + -+...|+....|++.-. ..+.+.-||.
T Consensus 314 tkn~kyiLsSG~DS~vkLWEi~t-~R~l~~YtGAg~tgrq~---~-------rtqAvFNhtEdyVl~pDEas~slcsWda 382 (430)
T KOG0640|consen 314 TKNGKYILSSGKDSTVKLWEIST-GRMLKEYTGAGTTGRQK---H-------RTQAVFNHTEDYVLFPDEASNSLCSWDA 382 (430)
T ss_pred ccCCeEEeecCCcceeeeeeecC-CceEEEEecCCcccchh---h-------hhhhhhcCccceEEccccccCceeeccc
Confidence 9999999985 569999999998 99999888763221100 0 11456777777776554 4578999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
++..+....--+|.++++.+.-+|.+..+++||.|...|+
T Consensus 383 Rtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRF 422 (430)
T KOG0640|consen 383 RTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARF 422 (430)
T ss_pred cchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeee
Confidence 9886655555699999999999999999999999999988
No 52
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-31 Score=236.64 Aligned_cols=278 Identities=18% Similarity=0.238 Sum_probs=229.4
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|.++.|+|..+ .++++-.+|.|.|||.++......+...
T Consensus 14 dRVKsVd~HPteP--w~la~LynG~V~IWnyetqtmVksfeV~------------------------------------- 54 (794)
T KOG0276|consen 14 DRVKSVDFHPTEP--WILAALYNGDVQIWNYETQTMVKSFEVS------------------------------------- 54 (794)
T ss_pred CceeeeecCCCCc--eEEEeeecCeeEEEecccceeeeeeeec-------------------------------------
Confidence 8899999977665 9999999999999999987654432221
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
.-+|++..|-+..+++++| +|..|++|+.++.++..
T Consensus 55 ----------------------------------------~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~--- 91 (794)
T KOG0276|consen 55 ----------------------------------------EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK--- 91 (794)
T ss_pred ----------------------------------------ccchhhheeeeccceEEEecCCceEEEEecccceeeE---
Confidence 1466777788888899999 99999999999887664
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.++.|.+.|++++.+|.. .++++++.|-.|++||.+..-.+ .+ ++.||...|++++|.|
T Consensus 92 -----~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~---~q------------tfeGH~HyVMqv~fnP 150 (794)
T KOG0276|consen 92 -----TFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWAC---EQ------------TFEGHEHYVMQVAFNP 150 (794)
T ss_pred -----EeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceee---ee------------EEcCcceEEEEEEecC
Confidence 678999999999999998 79999999999999999876443 23 3566778999999999
Q ss_pred -CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC--CEEEEEeCCCcEEEEec
Q 010256 352 -NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG--GRVATGSYSNLFRVFGC 427 (514)
Q Consensus 352 -~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~~~dg~i~iwd~ 427 (514)
|...+++++ |++|+||.+.. ..+..++.+|+..++ ++++-+.| .+|++|++|..++|||.
T Consensus 151 kD~ntFaS~sLDrTVKVWslgs-~~~nfTl~gHekGVN---------------~Vdyy~~gdkpylIsgaDD~tiKvWDy 214 (794)
T KOG0276|consen 151 KDPNTFASASLDRTVKVWSLGS-PHPNFTLEGHEKGVN---------------CVDYYTGGDKPYLISGADDLTIKVWDY 214 (794)
T ss_pred CCccceeeeeccccEEEEEcCC-CCCceeeeccccCcc---------------eEEeccCCCcceEEecCCCceEEEeec
Confidence 566788876 69999999997 888999999987654 88887644 69999999999999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecC
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN 507 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~ 507 (514)
++..+. ++++||...|..+.|+|.-+++++||+||++||....... +.....=-..+|.+++-.+.++.+++|.++
T Consensus 215 Qtk~CV-~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~---lE~tLn~gleRvW~I~~~k~~~~i~vG~De 290 (794)
T KOG0276|consen 215 QTKSCV-QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK---LEKTLNYGLERVWCIAAHKGDGKIAVGFDE 290 (794)
T ss_pred chHHHH-HHhhcccccceEEEecCCCcEEEEecCCccEEEecCccee---hhhhhhcCCceEEEEeecCCCCeEEEeccC
Confidence 987665 8999999999999999999999999999999993332222 222111125789999999999999999998
Q ss_pred cEEEEe
Q 010256 508 SLYMYY 513 (514)
Q Consensus 508 ~~~i~~ 513 (514)
+.++..
T Consensus 291 g~i~v~ 296 (794)
T KOG0276|consen 291 GSVTVK 296 (794)
T ss_pred CcEEEE
Confidence 887764
No 53
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-29 Score=209.25 Aligned_cols=278 Identities=19% Similarity=0.254 Sum_probs=213.8
Q ss_pred cccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
-...|+++.|+++|.+|++++.|..++|||..+++. ..++..++ -
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-----------------------~~ti~skk------------y 57 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-----------------------VKTINSKK------------Y 57 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-----------------------eeEeeccc------------c
Confidence 357899999999999999999999999999987773 34555554 5
Q ss_pred ceeEEEEeeCCCCcEEEEeeC--CCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 114 KINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
.|..++|...+ ..++.++. |.+||..++.+++..+
T Consensus 58 G~~~~~Fth~~--~~~i~sStk~d~tIryLsl~dNkylR----------------------------------------- 94 (311)
T KOG1446|consen 58 GVDLACFTHHS--NTVIHSSTKEDDTIRYLSLHDNKYLR----------------------------------------- 94 (311)
T ss_pred cccEEEEecCC--ceEEEccCCCCCceEEEEeecCceEE-----------------------------------------
Confidence 68888886333 34555544 8889888887765322
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
++.||...|++++.+|-+..++++ .|++|++||++..+....+
T Consensus 95 ------------------------------------YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l 138 (311)
T KOG1446|consen 95 ------------------------------------YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL 138 (311)
T ss_pred ------------------------------------EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence 147999999999999999999999 8999999999965544322
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
+...-..++|.|.| -++|++.....|++||+|.-.. .+..+|.... +-....+.+.||
T Consensus 139 ----------~~~~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dk--gPF~tf~i~~---------~~~~ew~~l~FS 196 (311)
T KOG1446|consen 139 ----------NLSGRPIAAFDPEG-LIFALANGSELIKLYDLRSFDK--GPFTTFSITD---------NDEAEWTDLEFS 196 (311)
T ss_pred ----------ecCCCcceeECCCC-cEEEEecCCCeEEEEEecccCC--CCceeEccCC---------CCccceeeeEEc
Confidence 12233467899999 8889888888999999997532 1123332221 122578999999
Q ss_pred cCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 351 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 351 ~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
|||++|+.++. +.+++.|.-. |..+.++..+....... .+.+|+||++++++|+.||+|.+|++++
T Consensus 197 ~dGK~iLlsT~~s~~~~lDAf~-G~~~~tfs~~~~~~~~~------------~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 197 PDGKSILLSTNASFIYLLDAFD-GTVKSTFSGYPNAGNLP------------LSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred CCCCEEEEEeCCCcEEEEEccC-CcEeeeEeeccCCCCcc------------eeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 99999998876 8999999987 88888888776542100 1789999999999999999999999999
Q ss_pred CceeeeeecC-CCcceeEEEECCCCCceeecCC
Q 010256 430 GSAESTTLEA-SKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 430 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
+.+. ..+.+ +..++..+.|+|....+++++.
T Consensus 264 g~~v-~~~~~~~~~~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 264 GKKV-AVLRGPNGGPVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred CcEe-eEecCCCCCCccccccCCceeeeeecCc
Confidence 8554 66666 7899999999999877777753
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.2e-30 Score=232.43 Aligned_cols=276 Identities=20% Similarity=0.347 Sum_probs=219.3
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|.+++|+ +++.++++++.||.+++|++.+++....
T Consensus 10 ~~i~~~~~~--~~~~~l~~~~~~g~i~i~~~~~~~~~~~----------------------------------------- 46 (289)
T cd00200 10 GGVTCVAFS--PDGKLLATGSGDGTIKVWDLETGELLRT----------------------------------------- 46 (289)
T ss_pred CCEEEEEEc--CCCCEEEEeecCcEEEEEEeeCCCcEEE-----------------------------------------
Confidence 889999994 5677999999999999999876542111
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
...|...+..+.|+|+++.++++ .++.|++|+++..+...
T Consensus 47 ------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~--- 87 (289)
T cd00200 47 ------------------------------------LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR--- 87 (289)
T ss_pred ------------------------------------EecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceE---
Confidence 13455677899999999999998 89999999998654332
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.+..|...+.++.|+|++ .++++++.++.+++||+++++.. .. +..|...+.+++|+|
T Consensus 88 -----~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~----~~------------~~~~~~~i~~~~~~~ 145 (289)
T cd00200 88 -----TLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCL----TT------------LRGHTDWVNSVAFSP 145 (289)
T ss_pred -----EEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEE----EE------------eccCCCcEEEEEEcC
Confidence 345677889999999997 78888888999999999866542 22 234557899999999
Q ss_pred CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
+++++++++ ++.|++||++. ++.+..+..|... +.+++|+|+++.+++++.|+.|++||+..+
T Consensus 146 ~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 209 (289)
T cd00200 146 DGTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGE---------------VNSVAFSPDGEKLLSSSSDGTIKLWDLSTG 209 (289)
T ss_pred cCCEEEEEcCCCcEEEEEccc-cccceeEecCccc---------------cceEEECCCcCEEEEecCCCcEEEEECCCC
Confidence 999999987 69999999986 7777777766543 338999999999999999999999999876
Q ss_pred ceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecC-cE
Q 010256 431 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN-SL 509 (514)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~-~~ 509 (514)
. ....+..|..++..+.++|++.++++++.|+.+++++.... ........|...|.+++|+|++++|++++.+ .+
T Consensus 210 ~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 285 (289)
T cd00200 210 K-CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285 (289)
T ss_pred c-eecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCCEEEEecCCCeE
Confidence 3 44667788889999999999999999999999999433211 1111222577899999999999999988754 66
Q ss_pred EEE
Q 010256 510 YMY 512 (514)
Q Consensus 510 ~i~ 512 (514)
.+|
T Consensus 286 ~iw 288 (289)
T cd00200 286 RIW 288 (289)
T ss_pred Eec
Confidence 666
No 55
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-31 Score=245.80 Aligned_cols=272 Identities=19% Similarity=0.322 Sum_probs=199.8
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcc-----------------------------cccccccc-
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR-----------------------------RDLEMMDY- 82 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~-----------------------------~~~~~~~~- 82 (514)
.|.+.|.++.||+||+|||+|+.||.|+||.+...+...... ........
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 799999999999999999999999999999987622110000 00000000
Q ss_pred -cccCCc------cceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeecc
Q 010256 83 -SMSRHP------EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (514)
Q Consensus 83 -~~~~~~------~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~ 155 (514)
+....| ..+.+..|.||. +.|.+|.| +.+ .+|++++.|++||+|++...++.++
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSW--SKn-~fLLSSSMDKTVRLWh~~~~~CL~~---- 405 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHT------------ADILDLSW--SKN-NFLLSSSMDKTVRLWHPGRKECLKV---- 405 (712)
T ss_pred CccccCCCccccccccchhhhhccc------------hhheeccc--ccC-CeeEeccccccEEeecCCCcceeeE----
Confidence 001111 223445678888 88999999 444 4999999999999999987654432
Q ss_pred CCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccC
Q 010256 156 VHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH 235 (514)
Q Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~ 235 (514)
..|.+-
T Consensus 406 --------------------------------------------------------------------------F~Hndf 411 (712)
T KOG0283|consen 406 --------------------------------------------------------------------------FSHNDF 411 (712)
T ss_pred --------------------------------------------------------------------------EecCCe
Confidence 357788
Q ss_pred eEEEEECC-CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 236 INSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 236 v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
|+|++|+| |.++|++| -|+.|+||++...+ ... ......-|++++|.|+| +..+.|+.+|.+++|+.+
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~-Vv~--------W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~ 481 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKK-VVD--------WNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTE 481 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCe-eEe--------ehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEcc
Confidence 99999999 68899999 89999999998443 322 23345789999999999 899999999999999998
Q ss_pred CCccccccccceeccCCCCccceeeccccceeEEEEecCC--CEEEEEeCCeEEEEEccCCCCceeeeeecccccccccc
Q 010256 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
..+.... +...... .+ -..|. .|+.+.|.|.. +.|++..|..|+|+|.+. ..++..+++......
T Consensus 482 ~lk~~~~----~~I~~~~--~K-k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~S---- 548 (712)
T KOG0283|consen 482 GLKLVSD----FHIRLHN--KK-KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSS---- 548 (712)
T ss_pred CCeEEEe----eeEeecc--Cc-cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCc----
Confidence 8665321 1111100 00 11222 79999999843 488888889999999986 778888887765432
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
.....|+.||++|+++++|..|+||+...
T Consensus 549 ---------Q~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 549 ---------QISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ---------ceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 12678999999999999999999999743
No 56
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.7e-30 Score=216.08 Aligned_cols=336 Identities=12% Similarity=0.085 Sum_probs=249.0
Q ss_pred eeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccc
Q 010256 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (514)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (514)
+.+|..|. +.|.+++.+| +.+++++|+.|..-.+|++.++.....+..+ ..+|.
T Consensus 57 ~~tF~~H~------------~svFavsl~P--~~~l~aTGGgDD~AflW~~~~ge~~~eltgH--------KDSVt---- 110 (399)
T KOG0296|consen 57 LVTFDKHT------------DSVFAVSLHP--NNNLVATGGGDDLAFLWDISTGEFAGELTGH--------KDSVT---- 110 (399)
T ss_pred eeehhhcC------------CceEEEEeCC--CCceEEecCCCceEEEEEccCCcceeEecCC--------CCceE----
Confidence 45688888 8999999976 5569999999999999999999866655555 34454
Q ss_pred cCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-
Q 010256 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 251 (514)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~- 251 (514)
++.|+.+|.+| ++|+-+|.|++|++....+ ...+ ...-..+.-+.|+|.+..|++|
T Consensus 111 ---~~~FshdgtlL------------ATGdmsG~v~v~~~stg~~-------~~~~-~~e~~dieWl~WHp~a~illAG~ 167 (399)
T KOG0296|consen 111 ---CCSFSHDGTLL------------ATGDMSGKVLVFKVSTGGE-------QWKL-DQEVEDIEWLKWHPRAHILLAGS 167 (399)
T ss_pred ---EEEEccCceEE------------EecCCCccEEEEEcccCce-------EEEe-ecccCceEEEEecccccEEEeec
Confidence 88999999999 9999999999999222211 1221 2344678889999999999999
Q ss_pred cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCC
Q 010256 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (514)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 331 (514)
.||.+.+|.+.....+ + .+.+|..++++-.|.|+| +.++++..||+|++||+.+++.. ......+
T Consensus 168 ~DGsvWmw~ip~~~~~-k-------v~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~----~~~~~~e-- 232 (399)
T KOG0296|consen 168 TDGSVWMWQIPSQALC-K-------VMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPL----HKITQAE-- 232 (399)
T ss_pred CCCcEEEEECCCccee-e-------EecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCcee----EEecccc--
Confidence 9999999999854333 2 578899999999999999 89999999999999999998763 2222111
Q ss_pred CccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC
Q 010256 332 GTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (514)
Q Consensus 332 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (514)
.....++.++..+..++.|+. +.+++-+..+ ++.+....+... .... ........|-++.|+..=
T Consensus 233 ---------~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s-gKVv~~~n~~~~-~l~~---~~e~~~esve~~~~ss~l 298 (399)
T KOG0296|consen 233 ---------GLELPCISLNLAGSTLTKGNSEGVACGVNNGS-GKVVNCNNGTVP-ELKP---SQEELDESVESIPSSSKL 298 (399)
T ss_pred ---------cCcCCccccccccceeEeccCCccEEEEcccc-ceEEEecCCCCc-cccc---cchhhhhhhhhccccccc
Confidence 134667778888888888754 7777777665 555544442100 0000 000111112256666677
Q ss_pred CEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceE
Q 010256 411 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLL 490 (514)
Q Consensus 411 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~ 490 (514)
.+.|+|+-||+|.|||+... .....-.|..+|..+.|.+ ..+|++++.||.|+.. .-+...+...+.+|...|+
T Consensus 299 pL~A~G~vdG~i~iyD~a~~--~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~w---DaRtG~l~~~y~GH~~~Il 372 (399)
T KOG0296|consen 299 PLAACGSVDGTIAIYDLAAS--TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQW---DARTGQLKFTYTGHQMGIL 372 (399)
T ss_pred chhhcccccceEEEEecccc--hhheeccCCCceEEEEEcC-cchheeeccCceEEee---eccccceEEEEecCchhee
Confidence 78899999999999999864 2245556888899999999 7899999999999992 2222234456668999999
Q ss_pred EEEEcCCCCEEEEEe-cCcEEEE
Q 010256 491 HLAWHPSENSIACAA-SNSLYMY 512 (514)
Q Consensus 491 ~~~~spd~~~l~~~~-~~~~~i~ 512 (514)
+++.+|+.+++++++ ++...||
T Consensus 373 ~f~ls~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDNTALVF 395 (399)
T ss_pred EEEEcCCCcEEEEecCCCeEEEE
Confidence 999999999999888 4455555
No 57
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5e-31 Score=245.13 Aligned_cols=290 Identities=15% Similarity=0.188 Sum_probs=227.8
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|..++|+|+.+ +++++-..|.|++||.+.+.+.
T Consensus 10 sRvKglsFHP~rP--wILtslHsG~IQlWDYRM~tli------------------------------------------- 44 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRP--WILTSLHSGVIQLWDYRMGTLI------------------------------------------- 44 (1202)
T ss_pred ccccceecCCCCC--EEEEeecCceeeeehhhhhhHH-------------------------------------------
Confidence 6789999987665 8999999999999998865421
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
.. +..|.++|+.++|+|++.++++| +|..|++|+..+.+..+
T Consensus 45 ---------------------------------~r-FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf--- 87 (1202)
T KOG0292|consen 45 ---------------------------------DR-FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF--- 87 (1202)
T ss_pred ---------------------------------hh-hhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh---
Confidence 11 27899999999999999999999 99999999998666554
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
++.+|-+.|+.+.|++.- .+++++|.|.+|+||+..+++++ ..++||...|+|.+|+|
T Consensus 88 -----tL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~i----------------avltGHnHYVMcAqFhp 145 (1202)
T KOG0292|consen 88 -----TLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCI----------------AVLTGHNHYVMCAQFHP 145 (1202)
T ss_pred -----hhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceE----------------EEEecCceEEEeeccCC
Confidence 678999999999999998 79999999999999999998763 44788889999999999
Q ss_pred CCCEEEEEe-CCeEEEEEccC-------CCCceeeeeeccccccccccccc----------cCCccceeeEEEcCCCCEE
Q 010256 352 NGRHILSRD-YMTLKLWDINM-------DSGPVATFQVHEHLRPKLCDLYE----------NDSIFDKFECCLSGDGGRV 413 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~s~~~~~l 413 (514)
....+++++ |.+|+|||+.- ++.....+.+++. ..+++. .+.-.+|.-++|+|.-.+|
T Consensus 146 tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~----~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpli 221 (1202)
T KOG0292|consen 146 TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQG----NSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLI 221 (1202)
T ss_pred ccceEEEecccceEEEEeecchhccCCCCCCchhhhhcccc----chhhcCCcCeeeeeeecccccccceEEecCCcceE
Confidence 999999987 59999999862 0100001111110 001110 1112245589999999999
Q ss_pred EEEeCCCcEEEEecCCC-ceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEE
Q 010256 414 ATGSYSNLFRVFGCSEG-SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHL 492 (514)
Q Consensus 414 ~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~ 492 (514)
++|++|..|++|.+... ..+..+..+|...|.++.|+|...+++|.|+|+++|+++ ..+.+-.....--.++...+
T Consensus 222 VSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD---m~kRt~v~tfrrendRFW~l 298 (1202)
T KOG0292|consen 222 VSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD---MTKRTSVQTFRRENDRFWIL 298 (1202)
T ss_pred EecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe---cccccceeeeeccCCeEEEE
Confidence 99999999999998753 355678899999999999999999999999999999932 22211111111135678899
Q ss_pred EEcCCCCEEEEEecCcEEEEe
Q 010256 493 AWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 493 ~~spd~~~l~~~~~~~~~i~~ 513 (514)
+-+|..+++|+|.++|+.+|-
T Consensus 299 aahP~lNLfAAgHDsGm~VFk 319 (1202)
T KOG0292|consen 299 AAHPELNLFAAGHDSGMIVFK 319 (1202)
T ss_pred EecCCcceeeeecCCceEEEE
Confidence 999999999999999999984
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.3e-32 Score=226.18 Aligned_cols=274 Identities=16% Similarity=0.291 Sum_probs=209.9
Q ss_pred cccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
..+.|.|+.+. ...+++|..|++|+|||..+-. ....+.||. +
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~-----------------------c~~~L~GHt------------G 238 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE-----------------------CLKILTGHT------------G 238 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHH-----------------------HHHhhhcCC------------C
Confidence 56789999986 5579999999999999976544 446788999 9
Q ss_pred ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
.|.|+.|. .+.+++|+.|.+|++||++++++..+.-.+... | +..--....+
T Consensus 239 SVLCLqyd----~rviisGSSDsTvrvWDv~tge~l~tlihHcea--------V---------Lhlrf~ng~m------- 290 (499)
T KOG0281|consen 239 SVLCLQYD----ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEA--------V---------LHLRFSNGYM------- 290 (499)
T ss_pred cEEeeecc----ceEEEecCCCceEEEEeccCCchhhHHhhhcce--------e---------EEEEEeCCEE-------
Confidence 99999993 358999999999999999999877665544221 1 1222233444
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeec
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 272 (514)
++++.|.++.+|| +... ....+++. +.||...|+.+.|+ .++++++ .|.+|++|++.+.+...
T Consensus 291 -----vtcSkDrsiaVWd-m~sp---s~it~rrV-LvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvR---- 354 (499)
T KOG0281|consen 291 -----VTCSKDRSIAVWD-MASP---TDITLRRV-LVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVR---- 354 (499)
T ss_pred -----EEecCCceeEEEe-ccCc---hHHHHHHH-Hhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeeh----
Confidence 8999999999999 3322 22334444 58999999999986 4599999 99999999998765442
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 352 (514)
++.+|...|.|+.+. + +++++|+.|.+|++||+..|.+ ++.+ .||..-|.++.|.
T Consensus 355 ----tl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~c----LRvL------------eGHEeLvRciRFd-- 409 (499)
T KOG0281|consen 355 ----TLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGAC----LRVL------------EGHEELVRCIRFD-- 409 (499)
T ss_pred ----hhhcccccceehhcc--C-eEEEecCCCceEEEEeccccHH----HHHH------------hchHHhhhheeec--
Confidence 678899999998874 4 7999999999999999999987 4444 4555789999996
Q ss_pred CCEEEEEeC-CeEEEEEccCCCCc--------eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEE
Q 010256 353 GRHILSRDY-MTLKLWDINMDSGP--------VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (514)
Q Consensus 353 g~~l~~~~~-~~i~iwd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (514)
.+.+++|.. |+|+|||+.....+ +.++..|.+ .|+.+.| |...|++++.|.+|.
T Consensus 410 ~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsg---------------RVFrLQF--D~fqIvsssHddtIL 472 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSG---------------RVFRLQF--DEFQIISSSHDDTIL 472 (499)
T ss_pred CceeeeccccceEEEEecccccCCcccccchHHHhhhhccc---------------eeEEEee--cceEEEeccCCCeEE
Confidence 678888865 99999999862221 222333332 2557777 567899999999999
Q ss_pred EEecCCC
Q 010256 424 VFGCSEG 430 (514)
Q Consensus 424 iwd~~~~ 430 (514)
|||...+
T Consensus 473 iWdFl~~ 479 (499)
T KOG0281|consen 473 IWDFLNG 479 (499)
T ss_pred EEEcCCC
Confidence 9999876
No 59
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.9e-30 Score=208.09 Aligned_cols=267 Identities=16% Similarity=0.284 Sum_probs=211.9
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.+++| +.+|..|++++.|+++++|++...+....
T Consensus 21 ~~v~Sv~w--n~~g~~lasgs~dktv~v~n~e~~r~~~~----------------------------------------- 57 (313)
T KOG1407|consen 21 QKVHSVAW--NCDGTKLASGSFDKTVSVWNLERDRFRKE----------------------------------------- 57 (313)
T ss_pred hcceEEEE--cccCceeeecccCCceEEEEecchhhhhh-----------------------------------------
Confidence 88999999 78899999999999999999976531100
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
....+|.+.|-.++|+|. ...|+++ .|.+|++||++.++....+
T Consensus 58 ----------------------------------~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i 103 (313)
T KOG1407|consen 58 ----------------------------------LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARI 103 (313)
T ss_pred ----------------------------------hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEe
Confidence 002678888999999875 6677787 8999999999988776544
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
. ....-.-+.|+|+| .+++.++.|..|...|.++.+........ -.+..+.|+
T Consensus 104 ~---------~~~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~~~-----------------~e~ne~~w~ 156 (313)
T KOG1407|consen 104 E---------TKGENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQFK-----------------FEVNEISWN 156 (313)
T ss_pred e---------ccCcceEEEEcCCC-CEEEEecCcccEEEEEecccceeehhccc-----------------ceeeeeeec
Confidence 1 23334568899999 89999999999999999987653221111 346778888
Q ss_pred cCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 351 ~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
.++.+++... .|.|.|..... -+++.+++.|... -+++.|+|+|+++|+|+.|..+.+||++.
T Consensus 157 ~~nd~Fflt~GlG~v~ILsyps-Lkpv~si~AH~sn---------------CicI~f~p~GryfA~GsADAlvSLWD~~E 220 (313)
T KOG1407|consen 157 NSNDLFFLTNGLGCVEILSYPS-LKPVQSIKAHPSN---------------CICIEFDPDGRYFATGSADALVSLWDVDE 220 (313)
T ss_pred CCCCEEEEecCCceEEEEeccc-cccccccccCCcc---------------eEEEEECCCCceEeeccccceeeccChhH
Confidence 7676666544 49999999986 8999999999743 23899999999999999999999999986
Q ss_pred CceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE---eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEec
Q 010256 430 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR---VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS 506 (514)
Q Consensus 430 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i---~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~ 506 (514)
.-++ ..+..+..+|+.+.|+.+|++||++|+|..|-| -.|.+.+ + +.+.+....+||||...+||-+.+
T Consensus 221 LiC~-R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~--e-----I~~~~~t~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 221 LICE-RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVW--E-----IPCEGPTFTVAWHPKRPLLAYACD 292 (313)
T ss_pred hhhh-eeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEE--E-----eeccCCceeEEecCCCceeeEEec
Confidence 6444 678889999999999999999999999999999 2333333 1 235788899999999999997764
Q ss_pred C
Q 010256 507 N 507 (514)
Q Consensus 507 ~ 507 (514)
+
T Consensus 293 d 293 (313)
T KOG1407|consen 293 D 293 (313)
T ss_pred C
Confidence 3
No 60
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=6.4e-30 Score=231.75 Aligned_cols=421 Identities=15% Similarity=0.192 Sum_probs=285.6
Q ss_pred ccccccceEEEEEcCCCC---eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceee----------eeec
Q 010256 31 EVQEVDIISAIEFDKSGD---HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK----------TEFQ 97 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~---~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 97 (514)
..+|.+.|.+++|+.-+. +||+++.|..||||.+.-+......+..... ..+...|.+... ..+.
T Consensus 187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~--t~~~~~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSL--TTLSNLPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccc--ccccCCceeeeeeeEEEEEehhhhhc
Confidence 459999999999998543 8999999999999998655432211111000 000111211111 2245
Q ss_pred cCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCce
Q 010256 98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (514)
Q Consensus 98 ~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (514)
||+ +.|+++.| .+.+..|++++.|+++.+|...+..-.-.......... ...+..+ ..
T Consensus 265 GHe------------DWV~sv~W--~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g-g~a~GF~-------g~ 322 (764)
T KOG1063|consen 265 GHE------------DWVYSVWW--HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG-GSAGGFW-------GG 322 (764)
T ss_pred Ccc------------cceEEEEE--ccchhhheecccCcceEEEecCCccceEEEEEEeeccc-cccccee-------eE
Confidence 787 99999999 55667899999999999998776532222222111100 0011222 67
Q ss_pred eeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeE
Q 010256 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRI 256 (514)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i 256 (514)
.|+|++..+ ++-+..|..++|. ......- .......||.+.|.+++|+|.|++|++. .|.+-
T Consensus 323 lw~~n~~~i------------i~~g~~Gg~hlWk----t~d~~~w-~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTT 385 (764)
T KOG1063|consen 323 LWSPNSNVI------------IAHGRTGGFHLWK----TKDKTFW-TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTT 385 (764)
T ss_pred EEcCCCCEE------------EEecccCcEEEEe----ccCccce-eeccccccccccceeeeecCCCCEEEEeccccce
Confidence 899999887 8889999999887 1111111 1222348999999999999999999998 89999
Q ss_pred EEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcc---------c--------c
Q 010256 257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL---------C--------D 319 (514)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~---------~--------~ 319 (514)
|++-.-..+....- +. .-+-|...++|++|-+.. ..|++|.....+|+|+....-. + .
T Consensus 386 RlFa~wg~q~~wHE--ia--RPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~ 460 (764)
T KOG1063|consen 386 RLFARWGRQQEWHE--IA--RPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPD 460 (764)
T ss_pred eeecccccccceee--ec--ccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccc
Confidence 99876522222221 11 224478889999999854 6899999999999998653100 0 0
Q ss_pred ---------cccccee--------------c---------cCCC-----------CccceeeccccceeEEEEecCCCEE
Q 010256 320 ---------THSKLFE--------------E---------QEAP-----------GTRSFFTEIIASISDIKFARNGRHI 356 (514)
Q Consensus 320 ---------~~~~~~~--------------~---------~~~~-----------~~~~~~~~~~~~i~~~~~s~~g~~l 356 (514)
.+...+. . .+.| .....+.||...|.+++.+|+|+++
T Consensus 461 gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnli 540 (764)
T KOG1063|consen 461 GANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLI 540 (764)
T ss_pred ccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEE
Confidence 0000000 0 0000 0122456799999999999999999
Q ss_pred EEEe-----C-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 357 LSRD-----Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 357 ~~~~-----~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
|++. . ..|++|+..+ -...+.+.+|.-. |+.++|||||++|++.+.|.++.+|.....
T Consensus 541 ASaCKS~~~ehAvI~lw~t~~-W~~~~~L~~HsLT---------------VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~ 604 (764)
T KOG1063|consen 541 ASACKSSLKEHAVIRLWNTAN-WLQVQELEGHSLT---------------VTRLAFSPDGRYLLSVSRDRTVSLYEVQED 604 (764)
T ss_pred eehhhhCCccceEEEEEeccc-hhhhheecccceE---------------EEEEEECCCCcEEEEeecCceEEeeeeecc
Confidence 9852 2 6899999987 6777788888755 559999999999999999999999998654
Q ss_pred ceee---eeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCC-cccccccceEEEEEcCC-C----CEE
Q 010256 431 SAES---TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG-NAFDFSMKLLHLAWHPS-E----NSI 501 (514)
Q Consensus 431 ~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~-~~~~~~~~v~~~~~spd-~----~~l 501 (514)
.... ..++.|+.-|++..|+|++++++++|.|.+|++..-.......+.. ....+...|+.++|.|- . ..+
T Consensus 605 ~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~v 684 (764)
T KOG1063|consen 605 IKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVV 684 (764)
T ss_pred cchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceE
Confidence 2222 3477999999999999999999999999999993322221111222 45678999999999874 2 256
Q ss_pred EEEecC-cEEEEe
Q 010256 502 ACAASN-SLYMYY 513 (514)
Q Consensus 502 ~~~~~~-~~~i~~ 513 (514)
++|-.. .+++|.
T Consensus 685 avGle~GeI~l~~ 697 (764)
T KOG1063|consen 685 AVGLEKGEIVLWR 697 (764)
T ss_pred EEEecccEEEEEe
Confidence 777754 455553
No 61
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=6.3e-30 Score=205.09 Aligned_cols=276 Identities=13% Similarity=0.218 Sum_probs=218.0
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|...|.+|+|+.+|..||+|+.|+++.+|+++..+.. ......+|.
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~---------------------~~~~~~gh~---------- 64 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR---------------------KELVYRGHT---------- 64 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh---------------------hhhcccCCC----------
Confidence 4578899999999999999999999999999999866432 223456787
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|..++|.|..+ ..|++++.|++|++||++.+++.........+ + .+.|+|+|+++
T Consensus 65 --~svdql~w~~~~~-d~~atas~dk~ir~wd~r~~k~~~~i~~~~en--------i--------~i~wsp~g~~~---- 121 (313)
T KOG1407|consen 65 --DSVDQLCWDPKHP-DLFATASGDKTIRIWDIRSGKCTARIETKGEN--------I--------NITWSPDGEYI---- 121 (313)
T ss_pred --cchhhheeCCCCC-cceEEecCCceEEEEEeccCcEEEEeeccCcc--------e--------EEEEcCCCCEE----
Confidence 8899999987544 58999999999999999999987776665322 2 67899999998
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+.++.|..|.+.| ......... ......++.++|+.++.+++.. ..|+|.|.....-+..
T Consensus 122 --------~~~~kdD~it~id-~r~~~~~~~--------~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv-- 182 (313)
T KOG1407|consen 122 --------AVGNKDDRITFID-ARTYKIVNE--------EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPV-- 182 (313)
T ss_pred --------EEecCcccEEEEE-ecccceeeh--------hcccceeeeeeecCCCCEEEEecCCceEEEEeccccccc--
Confidence 9999999999887 322221111 2233567889999888887776 7799999887744443
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.++..|.....||.|+|+| ++||+|+.|..+.+||+...-+ .+. +..+.-+|+.+.|
T Consensus 183 ------~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELiC----~R~------------isRldwpVRTlSF 239 (313)
T KOG1407|consen 183 ------QSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELIC----ERC------------ISRLDWPVRTLSF 239 (313)
T ss_pred ------cccccCCcceEEEEECCCC-ceEeeccccceeeccChhHhhh----hee------------eccccCceEEEEe
Confidence 2678899999999999999 9999999999999999976433 222 3334468999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 419 (514)
|.||++||+|+. .-|-|=++.+ +..+..++..... +.++|+|...+||-+.+|
T Consensus 240 S~dg~~lASaSEDh~IDIA~vet-Gd~~~eI~~~~~t----------------~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 240 SHDGRMLASASEDHFIDIAEVET-GDRVWEIPCEGPT----------------FTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccCcceeeccCccceEEeEeccc-CCeEEEeeccCCc----------------eeEEecCCCceeeEEecC
Confidence 999999999875 8999999998 7777777654432 289999999999977655
No 62
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.98 E-value=4e-29 Score=226.68 Aligned_cols=427 Identities=14% Similarity=0.171 Sum_probs=268.3
Q ss_pred ccccccceEEEEEcCCCC---eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 31 EVQEVDIISAIEFDKSGD---HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~---~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
..+|..+|+|+.|-|+.+ +|++|+.|+.|++|.+...... .+..+++|.
T Consensus 50 l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~---------------------~i~~~~g~~------- 101 (764)
T KOG1063|consen 50 LDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLI---------------------KIYTIQGHC------- 101 (764)
T ss_pred ccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheE---------------------EEEeecCcc-------
Confidence 458999999999999887 8999999999999999744332 455677776
Q ss_pred ccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccc--------cCCccee--cccccCCce
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA--------AGNGPIF--GSHVSAIPK 177 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~--------~~~~~v~--~~~~~~~~~ 177 (514)
+.++++. .......+.+.|+.+.+||.+..+......+.+..... ...+.+. +..... .+
T Consensus 102 -------~~~~cv~--a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~-~v 171 (764)
T KOG1063|consen 102 -------KECVCVV--ARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKF-VV 171 (764)
T ss_pred -------eeEEEEE--eeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcce-EE
Confidence 4455552 11112333478999999999665522221111110000 0000000 000000 00
Q ss_pred eeccCC--C--ccccc-------------cCCCCCCcccCCCCCCcEEeceeecccccc--------------cccc---
Q 010256 178 SYMANG--G--CGERN-------------FGCASNDSSFPPGGVSSLRLPVVVTSQETN--------------LVAG--- 223 (514)
Q Consensus 178 ~~~~~~--~--~l~~~-------------~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~--------------~~~~--- 223 (514)
..-.++ + .+..+ ....+..++++++.|..||||.+....+.. ....
T Consensus 172 ~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~ 251 (764)
T KOG1063|consen 172 DLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILE 251 (764)
T ss_pred EEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeee
Confidence 000000 0 00000 011134567899999999999964332111 0000
Q ss_pred ------ccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCc
Q 010256 224 ------CRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN 296 (514)
Q Consensus 224 ------~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 296 (514)
.....+.||.+.|+++.|+|.+..|+++ .|.++.+|...+...... ..++...+.+......+..|+|++ +
T Consensus 252 ~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv-~~vRlGe~gg~a~GF~g~lw~~n~-~ 329 (764)
T KOG1063|consen 252 EIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWV-DVVRLGEVGGSAGGFWGGLWSPNS-N 329 (764)
T ss_pred eEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEE-EEEEeecccccccceeeEEEcCCC-C
Confidence 1113346999999999999999888888 999999998874422211 111112233445568899999999 8
Q ss_pred EEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEcc-----
Q 010256 297 MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDIN----- 370 (514)
Q Consensus 297 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~----- 370 (514)
.+++-+..|..++|........ . +.....||...|++++|+|.|.+|++. .|.+-|+|-.-
T Consensus 330 ~ii~~g~~Gg~hlWkt~d~~~w-------~------~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~ 396 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWKTKDKTFW-------T------QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE 396 (764)
T ss_pred EEEEecccCcEEEEeccCccce-------e------eccccccccccceeeeecCCCCEEEEeccccceeeecccccccc
Confidence 9999999999999983332211 1 123467888999999999999999984 46666765322
Q ss_pred -----C------------------------CCCceeeeeecc--------------------------------------
Q 010256 371 -----M------------------------DSGPVATFQVHE-------------------------------------- 383 (514)
Q Consensus 371 -----~------------------------~~~~~~~~~~~~-------------------------------------- 383 (514)
. +.+.++.+....
T Consensus 397 wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~ 476 (764)
T KOG1063|consen 397 WHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFP 476 (764)
T ss_pred eeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcc
Confidence 0 000011110000
Q ss_pred ---------------ccccc---------------------cccccccCCccceeeEEEcCCCCEEEEEeCCC-----cE
Q 010256 384 ---------------HLRPK---------------------LCDLYENDSIFDKFECCLSGDGGRVATGSYSN-----LF 422 (514)
Q Consensus 384 ---------------~~~~~---------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-----~i 422 (514)
..... +..+| +..++|++++.+|+|+++|+++... .|
T Consensus 477 ~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY--GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI 554 (764)
T KOG1063|consen 477 GETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY--GHGYEVYALAISPTGNLIASACKSSLKEHAVI 554 (764)
T ss_pred cccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhc--cCceeEEEEEecCCCCEEeehhhhCCccceEE
Confidence 00000 00011 1235889999999999999987543 58
Q ss_pred EEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCc-ccccccceEEEEEcCCCCEE
Q 010256 423 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGN-AFDFSMKLLHLAWHPSENSI 501 (514)
Q Consensus 423 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~-~~~~~~~v~~~~~spd~~~l 501 (514)
++|+..+-. ....+++|.-.|+.++|+||+++|++.|.|+++.++.-.+-...++..+ .-.|..-|.+.+|+||+.++
T Consensus 555 ~lw~t~~W~-~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~F 633 (764)
T KOG1063|consen 555 RLWNTANWL-QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYF 633 (764)
T ss_pred EEEeccchh-hhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccccee
Confidence 999988653 3368999999999999999999999999999999943333322233322 23689999999999999999
Q ss_pred EEEe-cCcEEEEe
Q 010256 502 ACAA-SNSLYMYY 513 (514)
Q Consensus 502 ~~~~-~~~~~i~~ 513 (514)
|+++ ++.+.+|.
T Consensus 634 aTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 634 ATASRDKKVKVWE 646 (764)
T ss_pred EEecCCceEEEEe
Confidence 9999 66777774
No 63
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=1.2e-28 Score=215.59 Aligned_cols=385 Identities=13% Similarity=0.159 Sum_probs=269.9
Q ss_pred ccCcccccccccceEEEEEcCCCCeEEEecCCC--------eEEEEEecCCcccCCcccccccccccccCCccceeeeee
Q 010256 25 ERTAGEEVQEVDIISAIEFDKSGDHLATGDRGG--------RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF 96 (514)
Q Consensus 25 ~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (514)
++.+..+.+|.+.|.|++.+||.-.+|+|-..| .++|||..+-. .+..+
T Consensus 94 e~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~-----------------------TL~V~ 150 (626)
T KOG2106|consen 94 ERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLS-----------------------TLHVI 150 (626)
T ss_pred hhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccce-----------------------eeeee
Confidence 445667889999999999999998999876555 59999965332 22233
Q ss_pred ccCCCccccccccccccceeEEEEeeCCCCcEEEEe--eCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccC
Q 010256 97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLS--TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (514)
Q Consensus 97 ~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~--~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (514)
...+ ..|.+++|++...|.+++.. +.+..+.+||.+.+......... +..+.
T Consensus 151 g~f~------------~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~s--------ne~v~------ 204 (626)
T KOG2106|consen 151 GFFD------------RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTS--------NEVVF------ 204 (626)
T ss_pred cccc------------ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceec--------cceEE------
Confidence 3333 77999999988778777775 66788999999876532211111 12233
Q ss_pred CceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cC
Q 010256 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD 253 (514)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d 253 (514)
...|.|.+..+ +.....+.+.+|+ .+.....+....|....+..|.|++|.++|..+ +| ++
T Consensus 205 -~a~FHPtd~nl------------iit~Gk~H~~Fw~----~~~~~l~k~~~~fek~ekk~Vl~v~F~engdvi-TgDS~ 266 (626)
T KOG2106|consen 205 -LATFHPTDPNL------------IITCGKGHLYFWT----LRGGSLVKRQGIFEKREKKFVLCVTFLENGDVI-TGDSG 266 (626)
T ss_pred -EEEeccCCCcE------------EEEeCCceEEEEE----ccCCceEEEeeccccccceEEEEEEEcCCCCEE-eecCC
Confidence 66789998887 8888899999998 332222233333333344779999999999765 67 99
Q ss_pred CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccc-------ccccee
Q 010256 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT-------HSKLFE 326 (514)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~-------~~~~~~ 326 (514)
|.|.||+..+.+.... ...|.+.|.+++...+| .|++|+.|+.|..||-.-.+.... .+++..
T Consensus 267 G~i~Iw~~~~~~~~k~--------~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~ 336 (626)
T KOG2106|consen 267 GNILIWSKGTNRISKQ--------VHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA 336 (626)
T ss_pred ceEEEEeCCCceEEeE--------eeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEe
Confidence 9999999975543322 23799999999999998 566699999999999332221100 011110
Q ss_pred -ccC----------------CCCccceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccc
Q 010256 327 -EQE----------------APGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPK 388 (514)
Q Consensus 327 -~~~----------------~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 388 (514)
++. ...-.....+|......++.+|+...++++ .|+.+++|+ . .+++-+.......
T Consensus 337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt~~~~d~~--- 410 (626)
T KOG2106|consen 337 EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWTKIIEDPA--- 410 (626)
T ss_pred cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEEEEecCce---
Confidence 000 001112345688888999999988888875 569999999 3 5555444333322
Q ss_pred cccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE-
Q 010256 389 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR- 467 (514)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i- 467 (514)
.++.|+|.| .+|.|+..|...+.|.++. .. .++....++++.+.++|+|.+||.||.|+.|++
T Consensus 411 -------------~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~l-v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 411 -------------ECADFHPSG-VVAVGTATGRWFVLDTETQ-DL-VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIY 474 (626)
T ss_pred -------------eEeeccCcc-eEEEeeccceEEEEecccc-ee-EEEEecCCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence 289999999 9999999999999999974 33 334444899999999999999999999999999
Q ss_pred ---eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 468 ---VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 468 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
.+|.++. ..+.. +.+.|++++||+|+++|.+-+.+--++|.
T Consensus 475 ~Vs~~g~~y~---r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 475 RVSANGRKYS---RVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred EECCCCcEEE---Eeeee--cCceeEEeeecCCCceEEeccCceEEEEE
Confidence 2232222 12222 23899999999999999988866555553
No 64
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.7e-30 Score=205.63 Aligned_cols=280 Identities=18% Similarity=0.245 Sum_probs=216.2
Q ss_pred EEEEEcC-CCCeEEEec-------CCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 39 SAIEFDK-SGDHLATGD-------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 39 ~~~~~s~-~g~~l~tg~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.++.||| -.++||.+. ..|++.|-++.+.+.+ .++. +.+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi-----------------------~e~~----------s~d 58 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGI-----------------------QECQ----------SYD 58 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCe-----------------------EEEE----------eee
Confidence 4789999 334454443 3678888887643322 1111 222
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
.++.+..++|+++.+ ..+++++.||++++||+....
T Consensus 59 ~~D~LfdV~Wse~~e-~~~~~a~GDGSLrl~d~~~~s------------------------------------------- 94 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHE-NQVIAASGDGSLRLFDLTMPS------------------------------------------- 94 (311)
T ss_pred cccceeEeeecCCCc-ceEEEEecCceEEEeccCCCC-------------------------------------------
Confidence 337899999987554 588899999999999953221
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCcee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
.++.. .+.|...|.++.|++. ++.++++ -|++|++|+...++...
T Consensus 95 --------------------------------~Pi~~-~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~ 141 (311)
T KOG0277|consen 95 --------------------------------KPIHK-FKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ 141 (311)
T ss_pred --------------------------------cchhH-HHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE
Confidence 01122 2789999999999986 5556666 89999999998665443
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
++.+|...|...+|+|..+++|++++.|+.+++||++.... ...+..|...|.++.
T Consensus 142 --------Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk----------------~~~i~ah~~Eil~cd 197 (311)
T KOG0277|consen 142 --------TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK----------------FMSIEAHNSEILCCD 197 (311)
T ss_pred --------eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc----------------eeEEEeccceeEeec
Confidence 67899999999999999889999999999999999986432 122455667899999
Q ss_pred Eec-CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC-CEEEEEeCCCcEEEE
Q 010256 349 FAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVF 425 (514)
Q Consensus 349 ~s~-~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw 425 (514)
|+. +...+++|+ |+.|++||+++-..++..+.+|.-.+. .++|||-. .+||+++.|-+++||
T Consensus 198 w~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVR---------------kvk~Sph~~~lLaSasYDmT~riw 262 (311)
T KOG0277|consen 198 WSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVR---------------KVKFSPHHASLLASASYDMTVRIW 262 (311)
T ss_pred ccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEE---------------EEecCcchhhHhhhccccceEEec
Confidence 998 455666764 599999999987788888888876543 89999964 579999999999999
Q ss_pred ecCCCceeeeeecCCCcceeEEEECC-CCCceeecCCCCeEEE
Q 010256 426 GCSEGSAESTTLEASKNPMRRQVQTP-SRPSRPLGSLSGVVRR 467 (514)
Q Consensus 426 d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~v~i 467 (514)
|...+.....+...|++-+..+.|++ +..++|+.+.|..+++
T Consensus 263 ~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~V 305 (311)
T KOG0277|consen 263 DPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYV 305 (311)
T ss_pred ccccchhhhhhhhccceEEeccccccccCceeeecccccceee
Confidence 99876666678889999999999985 5668999999999998
No 65
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.4e-29 Score=228.82 Aligned_cols=453 Identities=14% Similarity=0.100 Sum_probs=291.7
Q ss_pred ccccceEEEEEcCCCCeEEEec--CCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeecc-CCC---ccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEP---EFDYL 106 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~---~~~~~ 106 (514)
.|..+++|++||++|+|+|+|- ....+++|++.....+.++ ....-...+..|+|..+++..... |+- .++|-
T Consensus 76 ssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEf-vdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr 154 (1080)
T KOG1408|consen 76 SSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEF-VDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWR 154 (1080)
T ss_pred ccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhh-hhccccceeeeecCCCcEEEeeccccceEEEhhhhh
Confidence 4667999999999999999986 5567999999876643221 111112237889999998876543 432 23333
Q ss_pred cc-----cccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccE-EEEEeeccCCC-----ccccCCcceecccccC-
Q 010256 107 KS-----LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHP-----EKAAGNGPIFGSHVSA- 174 (514)
Q Consensus 107 ~~-----~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~-----~~~~~~~~v~~~~~~~- 174 (514)
++ -++...|..++| +++|.|+++++. ..|++|.++.++ .+....+.... ........+.+....+
T Consensus 155 ~N~~~asnkiss~Vsav~f--sEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicA 231 (1080)
T KOG1408|consen 155 VNSSGASNKISSVVSAVAF--SEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICA 231 (1080)
T ss_pred hcccccccccceeEEEEEE--ccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccc
Confidence 32 256788999999 789999988874 799999998765 11111111100 0000000011111100
Q ss_pred -CceeeccCCCccccc-----------------cCCCCCCcccCCCCCCcEEeceeecccccccc--------------c
Q 010256 175 -IPKSYMANGGCGERN-----------------FGCASNDSSFPPGGVSSLRLPVVVTSQETNLV--------------A 222 (514)
Q Consensus 175 -~~~~~~~~~~~l~~~-----------------~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~--------------~ 222 (514)
+..+++..|....+. -.+.+..+++.|+.+|.|++|+ ..+.+-..+ .
T Consensus 232 estfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFn-p~tL~y~~Tlpr~halg~d~a~~~ 310 (1080)
T KOG1408|consen 232 ESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFN-PETLDYAGTLPRSHALGSDTANLS 310 (1080)
T ss_pred cceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecC-cchhhhccccccccccccchhhcc
Confidence 234445544443322 1345778999999999999998 333321100 0
Q ss_pred ccccccc---ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEec------
Q 010256 223 GCRRIYA---HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP------ 292 (514)
Q Consensus 223 ~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p------ 292 (514)
++.+.+. .+.-...-++.|++....|... .|..+++||++...+.-+. ..+--|...|+++.--|
T Consensus 311 q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~-----~s~lyHS~ciW~Ve~~p~nv~~~ 385 (1080)
T KOG1408|consen 311 QPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKC-----SSMLYHSACIWDVENLPCNVHSP 385 (1080)
T ss_pred cccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccce-----eeeeeccceeeeeccccccccCc
Confidence 0111110 1111234577899999999888 9999999999876544221 23445777777766544
Q ss_pred ------CCCcEEEEEecCCeEEEEEcCCCc---ccccccccee---------------ccCCCC---ccceeecccccee
Q 010256 293 ------THCNMLAYSSSKGSIRLIDMRQSA---LCDTHSKLFE---------------EQEAPG---TRSFFTEIIASIS 345 (514)
Q Consensus 293 ------~~~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~---------------~~~~~~---~~~~~~~~~~~i~ 345 (514)
.+ -|++++.|++||+||+..+. ...+++..-+ ....+. ...........+.
T Consensus 386 ~~aclp~~--cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R 463 (1080)
T KOG1408|consen 386 TAACLPRG--CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFR 463 (1080)
T ss_pred ccccCCcc--ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceE
Confidence 33 58999999999999997632 1111111000 000000 0001112234799
Q ss_pred EEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC---CCCEEEEEeCCCc
Q 010256 346 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG---DGGRVATGSYSNL 421 (514)
Q Consensus 346 ~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~dg~ 421 (514)
+++.||+|++|++|+. |+++||++.. -+....+..|+.. |.++.|+. ..++||+++.|..
T Consensus 464 ~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eAHesE---------------ilcLeyS~p~~~~kLLASasrdRl 527 (1080)
T KOG1408|consen 464 ALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEAHESE---------------ILCLEYSFPVLTNKLLASASRDRL 527 (1080)
T ss_pred EEEECCCcceecccCccCceEEEEehh-hhhhhheecccce---------------eEEEeecCchhhhHhhhhccCCce
Confidence 9999999999999988 9999999996 7777888888765 34777774 3468999999999
Q ss_pred EEEEecCCCceeeeeecCCCcceeEEEECCCC--CceeecCCCCeEEEeeCCCCC-cc-ccCCcccccccceEEEEEcCC
Q 010256 422 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSR--PSRPLGSLSGVVRRVKGADNS-AL-DANGNAFDFSMKLLHLAWHPS 497 (514)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~s~d~~v~i~~~~~~~-~~-~~~~~~~~~~~~v~~~~~spd 497 (514)
|+|||+.....+.+++.+|...|+++.|.-.| ..+++++.|+.+.+....+-. .. -......--...++.++..|.
T Consensus 528 IHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~ 607 (1080)
T KOG1408|consen 528 IHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT 607 (1080)
T ss_pred EEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC
Confidence 99999987767779999999999999998776 678999999988881111000 00 011111123568899999999
Q ss_pred CCEEEEEe-cCcEEEEe
Q 010256 498 ENSIACAA-SNSLYMYY 513 (514)
Q Consensus 498 ~~~l~~~~-~~~~~i~~ 513 (514)
.+++++++ +.++.||.
T Consensus 608 ~k~v~t~cQDrnirif~ 624 (1080)
T KOG1408|consen 608 SKLVVTVCQDRNIRIFD 624 (1080)
T ss_pred cceEEEEecccceEEEe
Confidence 99999888 77888885
No 66
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=8.5e-29 Score=229.13 Aligned_cols=395 Identities=15% Similarity=0.176 Sum_probs=284.8
Q ss_pred cccccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccce
Q 010256 12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (514)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (514)
+....|+++.- +..-+...+.+.|+++.=+|-=+.+|.|..+|+|.|+|+..++.
T Consensus 182 G~lql~Nvrt~---K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki---------------------- 236 (910)
T KOG1539|consen 182 GRLQLWNVRTG---KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI---------------------- 236 (910)
T ss_pred CcEEEEEeccC---cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcE----------------------
Confidence 34555666552 12223346679999999999888999999999999999988774
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcE-EEEeeCCCeEEEEEcCccEEEEEee-ccCCCccccCCcceec
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSAL-YLLSTNDKTIKLWKVQEKKVKKVFD-WNVHPEKAAGNGPIFG 169 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~v~~ 169 (514)
+.+|+... +.|+++.| ..||.. +++++..|.+.+||++..+...... .+ .+.+.
T Consensus 237 -l~sFk~d~------------g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--------~~sv~- 292 (910)
T KOG1539|consen 237 -LMSFKQDW------------GRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--------YGSVT- 292 (910)
T ss_pred -EEEEEccc------------cceeEEEe--ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--------cCCcc-
Confidence 34555433 78999999 566665 4556777999999999987665543 22 12222
Q ss_pred ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEEC-CCCCEE
Q 010256 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SDGETF 248 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l 248 (514)
...|.|....+ ++.+.|+.+++|- ....+.. .+..+ +..||..+..++.|. .++..+
T Consensus 293 ------~~~fl~~epVl------------~ta~~DnSlk~~v-fD~~dg~--pR~LR-~R~GHs~Pp~~irfy~~~g~~i 350 (910)
T KOG1539|consen 293 ------GATFLPGEPVL------------VTAGADNSLKVWV-FDSGDGV--PRLLR-SRGGHSAPPSCIRFYGSQGHFI 350 (910)
T ss_pred ------cceecCCCceE------------eeccCCCceeEEE-eeCCCCc--chhee-eccCCCCCchheeeeccCcEEE
Confidence 55666666666 8999999999887 3333322 11222 237899998899887 567777
Q ss_pred EEe-cCCeEEEEeccCCCc-----------------------------------------------------eeeeec--
Q 010256 249 ISA-DDLRINLWNLEISNQ-----------------------------------------------------SFNIVD-- 272 (514)
Q Consensus 249 ~s~-~d~~i~iwd~~~~~~-----------------------------------------------------~~~~~~-- 272 (514)
.++ .|++.+.+++....+ ....++
T Consensus 351 lsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~ 430 (910)
T KOG1539|consen 351 LSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFR 430 (910)
T ss_pred EecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEecc
Confidence 777 777777666532100 000000
Q ss_pred --------cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 273 --------VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 273 --------~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
++|..+......+++++.++.| ++.+.|+..|.|-+|++.+|-.. ..|-. -..|.++|
T Consensus 431 n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r----~sf~~---------~~ah~~~V 496 (910)
T KOG1539|consen 431 NKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHR----KSFGD---------SPAHKGEV 496 (910)
T ss_pred CcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEEcccCeee----ccccc---------CccccCce
Confidence 1122223344678999999999 99999999999999999988652 22210 14577899
Q ss_pred eEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEE
Q 010256 345 SDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (514)
++++...-++.+++++ +|-+.+||... ..++..+...... ..+..+....+++.+.+|-.|+
T Consensus 497 ~gla~D~~n~~~vsa~~~Gilkfw~f~~-k~l~~~l~l~~~~----------------~~iv~hr~s~l~a~~~ddf~I~ 559 (910)
T KOG1539|consen 497 TGLAVDGTNRLLVSAGADGILKFWDFKK-KVLKKSLRLGSSI----------------TGIVYHRVSDLLAIALDDFSIR 559 (910)
T ss_pred eEEEecCCCceEEEccCcceEEEEecCC-cceeeeeccCCCc----------------ceeeeeehhhhhhhhcCceeEE
Confidence 9999999888899865 59999999996 6666666544332 2677777888899999999999
Q ss_pred EEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEE
Q 010256 424 VFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC 503 (514)
Q Consensus 424 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~ 503 (514)
++|+.+. +....+.+|...++++.|||||++|++++.|++||+ |.+.. ....+.+......+++.|||+|.+||+
T Consensus 560 vvD~~t~-kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~---wDlpt-~~lID~~~vd~~~~sls~SPngD~LAT 634 (910)
T KOG1539|consen 560 VVDVVTR-KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRT---WDLPT-GTLIDGLLVDSPCTSLSFSPNGDFLAT 634 (910)
T ss_pred EEEchhh-hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEE---EeccC-cceeeeEecCCcceeeEECCCCCEEEE
Confidence 9999876 556889999999999999999999999999999999 32221 011122335788899999999999998
Q ss_pred Ee--cCcEEEEe
Q 010256 504 AA--SNSLYMYY 513 (514)
Q Consensus 504 ~~--~~~~~i~~ 513 (514)
+. .+++++|.
T Consensus 635 ~Hvd~~gIylWs 646 (910)
T KOG1539|consen 635 VHVDQNGIYLWS 646 (910)
T ss_pred EEecCceEEEEE
Confidence 87 47999995
No 67
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=2.2e-28 Score=230.68 Aligned_cols=301 Identities=15% Similarity=0.178 Sum_probs=208.2
Q ss_pred cchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeec
Q 010256 18 KFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ 97 (514)
Q Consensus 18 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (514)
+|.++||+....+ .|-..|+....++|+..+++++.+.....|+...+... ..+...+. .+. ....+.
T Consensus 5 k~rh~~g~~~k~~--~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v----~~~~~~G~----~~~--~~~~l~ 72 (493)
T PTZ00421 5 RFRHTQGVPARPD--RHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV----LKHTDYGK----LAS--NPPILL 72 (493)
T ss_pred cccccccccCCcc--cceeccccccccCCCCCcEeECCceEEEEEecCCceEE----eecccccc----CCC--CCceEe
Confidence 4666777654422 34567788888889888888888888888987554321 00110000 000 012367
Q ss_pred cCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCce
Q 010256 98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (514)
Q Consensus 98 ~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (514)
+|. +.|++++|+|. ++.+|++++.|++|++||+.++......
T Consensus 73 GH~------------~~V~~v~fsP~-d~~~LaSgS~DgtIkIWdi~~~~~~~~~------------------------- 114 (493)
T PTZ00421 73 GQE------------GPIIDVAFNPF-DPQKLFTASEDGTIMGWGIPEEGLTQNI------------------------- 114 (493)
T ss_pred CCC------------CCEEEEEEcCC-CCCEEEEEeCCCEEEEEecCCCcccccc-------------------------
Confidence 887 88999999652 5569999999999999999764311000
Q ss_pred eeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC-CEEEEe-cCCe
Q 010256 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLR 255 (514)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~ 255 (514)
..+... +.+|...|.+++|+|++ ++|+++ .|++
T Consensus 115 --------------------------------------------~~~l~~-L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 115 --------------------------------------------SDPIVH-LQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred --------------------------------------------CcceEE-ecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 000111 36899999999999985 688888 8999
Q ss_pred EEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccc
Q 010256 256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS 335 (514)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 335 (514)
|++||++++.... .+.+|...|.+++|+|++ .+|++++.|+.|++||+++++.. ..+.
T Consensus 150 VrIWDl~tg~~~~--------~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v----~tl~--------- 207 (493)
T PTZ00421 150 VNVWDVERGKAVE--------VIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIV----SSVE--------- 207 (493)
T ss_pred EEEEECCCCeEEE--------EEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEE----EEEe---------
Confidence 9999998665432 456788999999999999 89999999999999999987652 2333
Q ss_pred eeeccccc-eeEEEEecCCCEEEEEe-----CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 336 FFTEIIAS-ISDIKFARNGRHILSRD-----YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 336 ~~~~~~~~-i~~~~~s~~g~~l~~~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
+|.+. ...+.|.+++..+++++ ++.|++||++....++.....+... .+....|+++
T Consensus 208 ---~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~--------------~~~~~~~d~d 270 (493)
T PTZ00421 208 ---AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS--------------ALFIPFFDED 270 (493)
T ss_pred ---cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC--------------ceEEEEEcCC
Confidence 33332 45678888877777632 4899999998644455444333211 1225678999
Q ss_pred CCEEEEEe-CCCcEEEEecCCCceeeeeecCCCcceeEEEECCC
Q 010256 410 GGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 452 (514)
Q Consensus 410 ~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (514)
+++|++++ .|+.|++||+.++......-..+..++..+++.|.
T Consensus 271 ~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 271 TNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 99999887 59999999999875433222234567788888775
No 68
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.1e-30 Score=218.98 Aligned_cols=290 Identities=20% Similarity=0.265 Sum_probs=223.0
Q ss_pred chhhccccCcccccccccceEEEEEcCCC-CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeec
Q 010256 19 FSQVFGERTAGEEVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ 97 (514)
Q Consensus 19 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~g-~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (514)
+-++|..+.....-+|.+.|.|++=+|.. ..+|+|+.||.|+|||+.... ....++
T Consensus 50 leR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~-----------------------~~~~f~ 106 (433)
T KOG0268|consen 50 LERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE-----------------------CIRTFK 106 (433)
T ss_pred HHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh-----------------------hhheee
Confidence 44455555555567999999999999987 789999999999999998655 346788
Q ss_pred cCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCce
Q 010256 98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (514)
Q Consensus 98 ~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (514)
.|+ +.|..|++. . ..+++++.|++|+.|.+... ......
T Consensus 107 AH~------------G~V~Gi~v~--~--~~~~tvgdDKtvK~wk~~~~-p~~til------------------------ 145 (433)
T KOG0268|consen 107 AHE------------GLVRGICVT--Q--TSFFTVGDDKTVKQWKIDGP-PLHTIL------------------------ 145 (433)
T ss_pred ccc------------CceeeEEec--c--cceEEecCCcceeeeeccCC-cceeee------------------------
Confidence 998 889999994 3 47999999999999988652 110000
Q ss_pred eeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEE
Q 010256 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRIN 257 (514)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~ 257 (514)
-...+..+.-+..+..++++. ..|.
T Consensus 146 ------------------------------------------------------g~s~~~gIdh~~~~~~FaTcG-e~i~ 170 (433)
T KOG0268|consen 146 ------------------------------------------------------GKSVYLGIDHHRKNSVFATCG-EQID 170 (433)
T ss_pred ------------------------------------------------------ccccccccccccccccccccC-ceee
Confidence 002233444444566667662 2588
Q ss_pred EEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCcccee
Q 010256 258 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF 337 (514)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (514)
|||.+...+.. .+......|.++.|+|....+|++|..|+.|.|||++++....+.+..
T Consensus 171 IWD~~R~~Pv~--------smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~------------- 229 (433)
T KOG0268|consen 171 IWDEQRDNPVS--------SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT------------- 229 (433)
T ss_pred ecccccCCccc--------eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee-------------
Confidence 99997554432 455567889999999998788999999999999999998875332222
Q ss_pred eccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE
Q 010256 338 TEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 416 (514)
Q Consensus 338 ~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 416 (514)
..-+.++|+|.+-.+++|+ |..++.||++.-..++....+|... |++++|||.|+-+++|
T Consensus 230 ----mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA---------------V~dVdfsptG~Efvsg 290 (433)
T KOG0268|consen 230 ----MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA---------------VMDVDFSPTGQEFVSG 290 (433)
T ss_pred ----ccccceecCccccceeeccccccceehhhhhhcccchhhccccee---------------EEEeccCCCcchhccc
Confidence 2457799999777777775 4999999999767778877777654 5699999999999999
Q ss_pred eCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 417 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 417 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|.|.+|+||.+..+.........-...|.++.|+.|.+|+++||.|+.||+
T Consensus 291 syDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRl 341 (433)
T KOG0268|consen 291 SYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRL 341 (433)
T ss_pred cccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceee
Confidence 999999999998775443333344567899999999999999999999999
No 69
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.8e-30 Score=216.54 Aligned_cols=235 Identities=16% Similarity=0.216 Sum_probs=185.2
Q ss_pred cccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010256 229 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 307 (514)
+.||++.|.|+.|. .+.|++| +|.+|++||+++++... ++-+|-..|..+.|+. .++++++.|.++
T Consensus 233 L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~--------tlihHceaVLhlrf~n---g~mvtcSkDrsi 299 (499)
T KOG0281|consen 233 LTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN--------TLIHHCEAVLHLRFSN---GYMVTCSKDRSI 299 (499)
T ss_pred hhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh--------HHhhhcceeEEEEEeC---CEEEEecCCcee
Confidence 48999999999885 4589999 99999999999877653 5677899999999985 489999999999
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccc
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
.+||+...... ..+..+.||...|+.+.|+ .+++++++ |.+|++|++.+ .+.+.++.+|...+
T Consensus 300 aVWdm~sps~i-------------t~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st-~efvRtl~gHkRGI 363 (499)
T KOG0281|consen 300 AVWDMASPTDI-------------TLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTST-CEFVRTLNGHKRGI 363 (499)
T ss_pred EEEeccCchHH-------------HHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccc-eeeehhhhcccccc
Confidence 99999775421 1134567888999999997 56999875 59999999998 99999999998653
Q ss_pred cccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEE
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR 466 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~ 466 (514)
. ++. -.|+++++|+.|.+|++||++.|.++ ..++||.+-|+.+.| +.+.+++|+-||+|+
T Consensus 364 A---------------ClQ--Yr~rlvVSGSSDntIRlwdi~~G~cL-RvLeGHEeLvRciRF--d~krIVSGaYDGkik 423 (499)
T KOG0281|consen 364 A---------------CLQ--YRDRLVVSGSSDNTIRLWDIECGACL-RVLEGHEELVRCIRF--DNKRIVSGAYDGKIK 423 (499)
T ss_pred e---------------ehh--ccCeEEEecCCCceEEEEeccccHHH-HHHhchHHhhhheee--cCceeeeccccceEE
Confidence 2 333 37899999999999999999998655 799999999999998 567899999999999
Q ss_pred Ee---eCCCCCc--ccc-CCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 467 RV---KGADNSA--LDA-NGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 467 i~---~~~~~~~--~~~-~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
+. .+-.+.. .++ .....+|++.|..+.|. +-..+++..++.+.||+
T Consensus 424 vWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD-~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 424 VWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD-EFQIISSSHDDTILIWD 475 (499)
T ss_pred EEecccccCCcccccchHHHhhhhccceeEEEeec-ceEEEeccCCCeEEEEE
Confidence 92 1222210 011 12234789999999984 23334455589999996
No 70
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=215.63 Aligned_cols=282 Identities=13% Similarity=0.162 Sum_probs=213.4
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.+.|.-+.| +++|++||+++.|.+..+|.+.....
T Consensus 223 htdEVWfl~F--S~nGkyLAsaSkD~Taiiw~v~~d~~------------------------------------------ 258 (519)
T KOG0293|consen 223 HTDEVWFLQF--SHNGKYLASASKDSTAIIWIVVYDVH------------------------------------------ 258 (519)
T ss_pred CCCcEEEEEE--cCCCeeEeeccCCceEEEEEEecCcc------------------------------------------
Confidence 3488999999 78899999999999999998754321
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+++. . .+.+|..+|..+.|+||.++|+++ .|..+.+||+.++.....
T Consensus 259 ----------------~kl~---------------~-tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~ 306 (519)
T KOG0293|consen 259 ----------------FKLK---------------K-TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHL 306 (519)
T ss_pred ----------------eeee---------------e-eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhh
Confidence 1110 1 137899999999999999999998 788899999998765432
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
. -.++...+.+++|.||| ..+++|+.|+.+..||+.... ...|++... ..|.++++
T Consensus 307 y-------~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~-----~~~W~gvr~-----------~~v~dlai 362 (519)
T KOG0293|consen 307 Y-------PSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNI-----LGNWEGVRD-----------PKVHDLAI 362 (519)
T ss_pred c-------ccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcch-----hhccccccc-----------ceeEEEEE
Confidence 1 12256789999999999 899999999999999997644 344554432 36999999
Q ss_pred ecCCCEEEE-EeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
++||+++++ +.|..|++++... ......+..+.. +++++.|.|++++.+.=.+..+++||++
T Consensus 363 t~Dgk~vl~v~~d~~i~l~~~e~-~~dr~lise~~~----------------its~~iS~d~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 363 TYDGKYVLLVTVDKKIRLYNREA-RVDRGLISEEQP----------------ITSFSISKDGKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred cCCCcEEEEEecccceeeechhh-hhhhccccccCc----------------eeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence 999999887 5679999999885 443333333332 4589999999999998899999999999
Q ss_pred CCceeeeeecCCCcc--eeEEEEC-CCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCC-EEEEE
Q 010256 429 EGSAESTTLEASKNP--MRRQVQT-PSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN-SIACA 504 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~--v~~~~~~-~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~-~l~~~ 504 (514)
.. .+...+.||+.. +-.-+|- .+..++|+||+|+.|+| |......+.....+|...|++++|+|... ++|+|
T Consensus 426 e~-~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyI---Whr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASa 501 (519)
T KOG0293|consen 426 EN-KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYI---WHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASA 501 (519)
T ss_pred hh-hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEE---EEccCCceeEeecCCcceeeEEecCCCCHHHhhcc
Confidence 54 555778888755 3334554 56689999999999999 22221223334556999999999999765 57777
Q ss_pred e-cCcEEEEe
Q 010256 505 A-SNSLYMYY 513 (514)
Q Consensus 505 ~-~~~~~i~~ 513 (514)
+ ++.+.||.
T Consensus 502 sDDgtIRIWg 511 (519)
T KOG0293|consen 502 SDDGTIRIWG 511 (519)
T ss_pred CCCCeEEEec
Confidence 6 56677874
No 71
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.5e-28 Score=201.42 Aligned_cols=280 Identities=18% Similarity=0.242 Sum_probs=213.4
Q ss_pred ccccceEEEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 33 QEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 33 ~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
+..+.|.+|+||| ...+|+.|+.||+||+|+++..... .-+....|+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~---------------------~~ka~~~~~----------- 72 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL---------------------VPKAQQSHD----------- 72 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcc---------------------cchhhhccC-----------
Confidence 4568999999999 5567779999999999999864211 012334555
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
++|.+++| +.+|..+++|+.|+.+++||+.+++...+
T Consensus 73 -~PvL~v~W--sddgskVf~g~~Dk~~k~wDL~S~Q~~~v---------------------------------------- 109 (347)
T KOG0647|consen 73 -GPVLDVCW--SDDGSKVFSGGCDKQAKLWDLASGQVSQV---------------------------------------- 109 (347)
T ss_pred -CCeEEEEE--ccCCceEEeeccCCceEEEEccCCCeeee----------------------------------------
Confidence 89999999 78899999999999999999998864322
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC--CEEEEe-cCCeEEEEeccCCCcee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
..|..+|..+.|-+.. ..|++| .|++|++||++...+..
T Consensus 110 --------------------------------------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~ 151 (347)
T KOG0647|consen 110 --------------------------------------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA 151 (347)
T ss_pred --------------------------------------eecccceeEEEEecCCCcceeEecccccceeecccCCCCeee
Confidence 4677888888886654 489999 89999999999665553
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
.+ ...+.++++..-. .+++.+..++.|.+|+++++.... +..+.| .+-.+++++
T Consensus 152 t~---------~LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~------k~~~Sp--------Lk~Q~R~va 205 (347)
T KOG0647|consen 152 TL---------QLPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEF------KRIESP--------LKWQTRCVA 205 (347)
T ss_pred ee---------eccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchh------hhhcCc--------ccceeeEEE
Confidence 32 1356677766532 578889999999999998765431 111111 123589999
Q ss_pred EecCCCEEEEEeC-CeEEEEEccCCC--CceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEE
Q 010256 349 FARNGRHILSRDY-MTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (514)
Q Consensus 349 ~s~~g~~l~~~~~-~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (514)
..+|.+..+.|+- |++.|..++. . +.-.+++.|..... . ++.++.|.+++|+|.-..|+|++.||++.+|
T Consensus 206 ~f~d~~~~alGsiEGrv~iq~id~-~~~~~nFtFkCHR~~~~-~-----~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FW 278 (347)
T KOG0647|consen 206 CFQDKDGFALGSIEGRVAIQYIDD-PNPKDNFTFKCHRSTNS-V-----NDDVYAVNSIAFHPVHGTLVTAGSDGTFSFW 278 (347)
T ss_pred EEecCCceEeeeecceEEEEecCC-CCccCceeEEEeccCCC-C-----CCceEEecceEeecccceEEEecCCceEEEe
Confidence 9998887788764 9999999886 4 44556777764322 1 1356778899999999999999999999999
Q ss_pred ecCCCceeeeeecCCCcceeEEEECCCCCceeec
Q 010256 426 GCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 426 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
|-....+ +++.+.|..+|++..|+.+|.++|-+
T Consensus 279 Dkdar~k-Lk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 279 DKDARTK-LKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred cchhhhh-hhccCcCCCccceeEecCCCCEEEEE
Confidence 9886543 47788999999999999999988765
No 72
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4e-30 Score=219.20 Aligned_cols=283 Identities=18% Similarity=0.253 Sum_probs=222.1
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.-.|...|..+.|-++...|++|+.|..|++|++...+.. ...++.|..
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~---------------------~~~tLaGs~---------- 219 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE---------------------LISTLAGSL---------- 219 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchhh---------------------hhhhhhccC----------
Confidence 3478899999999999899999999999999998766521 334566655
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|+++.| .+++.++++++.|+.+++|++...+...
T Consensus 220 --g~it~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~~---------------------------------------- 255 (459)
T KOG0288|consen 220 --GNITSIDF--DSDNKHVIAASNDKNLRLWNVDSLRLRH---------------------------------------- 255 (459)
T ss_pred --CCcceeee--cCCCceEEeecCCCceeeeeccchhhhh----------------------------------------
Confidence 78999999 7788899999999999999998764211
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+ +.+|++.|+++.|......+++| .|.+|++||+........
T Consensus 256 ------------------------------------T-LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 256 ------------------------------------T-LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred ------------------------------------h-hcccccceeeehhhccccceeeccccchhhhhhhhhhheecc
Confidence 1 47899999999998887778899 999999999985433221
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
+ + ....+..|+.++ ..+++|..|+.|++||.++... .+..+.. +.|+++..
T Consensus 299 ~-------l--~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~----~~sv~~g-------------g~vtSl~l 349 (459)
T KOG0288|consen 299 V-------L--PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADK----TRSVPLG-------------GRVTSLDL 349 (459)
T ss_pred c-------c--ccccccceEecc---eeeeecccccceEEEeccCCce----eeEeecC-------------cceeeEee
Confidence 1 1 234456666653 5789999999999999998775 2333332 58999999
Q ss_pred ecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+++|..|.+.+ |.++.+.|+++ .....++...... +-.+.+.+.|||++.|+++||.||.|+||++.
T Consensus 350 s~~g~~lLsssRDdtl~viDlRt-~eI~~~~sA~g~k-----------~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~ 417 (459)
T KOG0288|consen 350 SMDGLELLSSSRDDTLKVIDLRT-KEIRQTFSAEGFK-----------CASDWTRVVFSPDGSYVAAGSADGSVYIWSVF 417 (459)
T ss_pred ccCCeEEeeecCCCceeeeeccc-ccEEEEeeccccc-----------cccccceeEECCCCceeeeccCCCcEEEEEcc
Confidence 99999888865 58999999997 5555555443321 11124479999999999999999999999999
Q ss_pred CCceeeeeecCCCc--ceeEEEECCCCCceeecCCCCeEEE
Q 010256 429 EGSAESTTLEASKN--PMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 429 ~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+++.. ..+..... .|.++.|+|.|.+|++++.++.+.+
T Consensus 418 tgKlE-~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~l 457 (459)
T KOG0288|consen 418 TGKLE-KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTL 457 (459)
T ss_pred CceEE-EEeccCCCCcceEEEEEcCCCchhhcccCCcceEe
Confidence 88544 55555444 4999999999999999999998877
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=5.5e-29 Score=237.70 Aligned_cols=314 Identities=16% Similarity=0.231 Sum_probs=231.7
Q ss_pred ccceEEEEEcCCCCeEEEec--CCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
...|.+++.+|||..+|||+ .||.++||+.+.--. ........ -.+.+.+...|.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~------~~~~~~~~-----l~k~l~~m~~h~------------ 69 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD------EKEEKNEN-----LPKHLCTMDDHD------------ 69 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccc------hhhhhhcc-----cchhheeecccc------------
Confidence 45699999999999999999 899999999653210 00000000 112344556676
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|+|++| ++||++||+|++|+.|.+|.....- .+.++
T Consensus 70 ~sv~CVR~--S~dG~~lAsGSDD~~v~iW~~~~~~----------------~~~~f------------------------ 107 (942)
T KOG0973|consen 70 GSVNCVRF--SPDGSYLASGSDDRLVMIWERAEIG----------------SGTVF------------------------ 107 (942)
T ss_pred CceeEEEE--CCCCCeEeeccCcceEEEeeecccC----------------Ccccc------------------------
Confidence 89999999 7899999999999999999876410 00110
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
-+++....+.-|. +... +.+|...|.+++|+|++.+|+++ -|++|.+|+..+.+. .+
T Consensus 108 ------gs~g~~~~vE~wk------------~~~~-l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~-~~-- 165 (942)
T KOG0973|consen 108 ------GSTGGAKNVESWK------------VVSI-LRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL-LK-- 165 (942)
T ss_pred ------cccccccccceee------------EEEE-EecCCCccceeccCCCccEEEEecccceEEEEcccccee-ee--
Confidence 1111122223233 2233 37899999999999999999999 899999999987733 32
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.+.+|...|-.+.|.|-| ++|++-+.|++|++|++.+..........|+.. .-...+..+.|||
T Consensus 166 -----vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~----------~~~T~f~RlSWSP 229 (942)
T KOG0973|consen 166 -----VLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEES----------PLTTFFLRLSWSP 229 (942)
T ss_pred -----eeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhC----------CCcceeeecccCC
Confidence 578899999999999999 999999999999999977644422212222211 1124578899999
Q ss_pred CCCEEEEEe-----CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC-------------CC--
Q 010256 352 NGRHILSRD-----YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-------------GG-- 411 (514)
Q Consensus 352 ~g~~l~~~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------------~~-- 411 (514)
||++|++.. ..++.|.+-.+ -+.-..+.+|.... ..+.|+|. .+
T Consensus 230 DG~~las~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~---------------evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 230 DGHHLASPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAPV---------------EVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred CcCeecchhhccCCcceeEEEecCC-ceeeeeeecCCCce---------------EEEEeChHHhccccccCCccCCCcc
Confidence 999999842 26888888765 66677888888753 37777762 11
Q ss_pred --EEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 412 --RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 412 --~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+|+|+.|++|.||.....+++....+-...+|..+.|+|||..|..+|.||+|.+
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~ 351 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVAL 351 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEE
Confidence 57899999999999987665655555666789999999999999999999999998
No 74
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=1.6e-28 Score=210.76 Aligned_cols=281 Identities=17% Similarity=0.259 Sum_probs=229.2
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
...|+++...|..+.++||+.|..+.++|...++ .+..+.||. ..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q-----------------------~l~~~~Gh~------------kk 263 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ-----------------------ILATLKGHT------------KK 263 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhh-----------------------hhhhccCcc------------eE
Confidence 4678889998887899999999999999986655 557899998 88
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
|+.+.|+|. ...+++++.|..|++|........
T Consensus 264 i~~v~~~~~--~~~v~~aSad~~i~vws~~~~s~~--------------------------------------------- 296 (506)
T KOG0289|consen 264 ITSVKFHKD--LDTVITASADEIIRVWSVPLSSEP--------------------------------------------- 296 (506)
T ss_pred EEEEEeccc--hhheeecCCcceEEeeccccccCc---------------------------------------------
Confidence 999999654 448899999999999987643210
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeecc
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
.....|..+|+.+..+|.|.||+++ +|++..+.|++++......
T Consensus 297 --------------------------------~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~v--- 341 (506)
T KOG0289|consen 297 --------------------------------TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVV--- 341 (506)
T ss_pred --------------------------------cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEE---
Confidence 0126788999999999999999999 9999999999977765443
Q ss_pred CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 274 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
.-+...-.+++.+|+||| .+|.+|..|+.+++||+..+... ..|.+|.++|..++|+.+|
T Consensus 342 ---s~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~----------------a~Fpght~~vk~i~FsENG 401 (506)
T KOG0289|consen 342 ---SDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNV----------------AKFPGHTGPVKAISFSENG 401 (506)
T ss_pred ---eeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCcccc----------------ccCCCCCCceeEEEeccCc
Confidence 112234558999999999 99999999999999999887642 2367788999999999999
Q ss_pred CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCce
Q 010256 354 RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (514)
Q Consensus 354 ~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 432 (514)
-+|+++.+ +.|++||++. .+..+++...+.. ++.+++|.+.|.+|+.++.|=.|++++-.+..+
T Consensus 402 Y~Lat~add~~V~lwDLRK-l~n~kt~~l~~~~--------------~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 402 YWLATAADDGSVKLWDLRK-LKNFKTIQLDEKK--------------EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW 466 (506)
T ss_pred eEEEEEecCCeEEEEEehh-hcccceeeccccc--------------cceeEEEcCCCCeEEeecceeEEEEEecccccc
Confidence 99999755 8899999997 6777777655431 134899999999999998888888887655444
Q ss_pred e-eeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 433 E-STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 433 ~-~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
. ...+..|.+..+.+.|....++++++|.|..+++
T Consensus 467 ~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 467 TEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred eeeehhhhcccccceeeecccceEEeeccchhheEE
Confidence 3 3667778888899999999999999999999887
No 75
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=4.8e-28 Score=204.44 Aligned_cols=258 Identities=17% Similarity=0.207 Sum_probs=190.1
Q ss_pred ccCccCeEEEEECC---CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC
Q 010256 230 HAHDYHINSISNNS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 305 (514)
Q Consensus 230 ~~h~~~v~~~~~~~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg 305 (514)
.+|.++|.+++|.- ....|+++ .|.++++|.++.+....... ....+|...|-++...+++ ..+++|+.|.
T Consensus 141 ~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~----~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~ 215 (423)
T KOG0313|consen 141 VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL----KVCRGHKRSVDSVSVDSSG-TRFCSGSWDT 215 (423)
T ss_pred ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH----hHhcccccceeEEEecCCC-CeEEeecccc
Confidence 67888888777643 23458888 99999999998665443321 1235899999999999999 8999999999
Q ss_pred eEEEEEcCCCcc--ccc-------cccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCc
Q 010256 306 SIRLIDMRQSAL--CDT-------HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGP 375 (514)
Q Consensus 306 ~i~~wd~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~ 375 (514)
.|++|+..+... ... ..+.-+......+...+.+|..+|.++.|++ ...+++++ |.+|+.||+.+ +..
T Consensus 216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet-g~~ 293 (423)
T KOG0313|consen 216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET-GGL 293 (423)
T ss_pred eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec-ccc
Confidence 999999332110 000 0001111112234567889999999999998 45666654 69999999998 777
Q ss_pred eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCce--eeeeecCCCcceeEEEECCCC
Q 010256 376 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA--ESTTLEASKNPMRRQVQTPSR 453 (514)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~ 453 (514)
..++...... +++..+|..++|++|+.|..+++||.+++.- ..+.+.+|...|.++.++|..
T Consensus 294 ~~~~~~~ksl----------------~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~ 357 (423)
T KOG0313|consen 294 KSTLTTNKSL----------------NCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTN 357 (423)
T ss_pred eeeeecCcce----------------eEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCC
Confidence 7777665432 3899999999999999999999999987643 348889999999999999976
Q ss_pred C-ceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 454 P-SRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 454 ~-~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
. .++++|.|+++++.+-.... ....+...|...|.++.|+. +.+|++|+ ++.++||.
T Consensus 358 ~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 358 EFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFK 416 (423)
T ss_pred ceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEeccC-CceEEeccCcceEEEec
Confidence 6 57999999999993222221 11223446899999999965 45566555 88888885
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.7e-28 Score=212.68 Aligned_cols=279 Identities=16% Similarity=0.272 Sum_probs=218.2
Q ss_pred ccccceEEEEEcCCCC-eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 33 QEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
...+.|++++|||... -+|+.+ .-.+.||+..+.... .++.-..
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~-----------------------k~~srFk----------- 68 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVR-----------------------KTFSRFK----------- 68 (487)
T ss_pred cccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhh-----------------------hhHHhhc-----------
Confidence 4458999999999544 355544 336999998765432 2222222
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..|.++.| ..||++|++|...|.|+++|..+..
T Consensus 69 -~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~r~-------------------------------------------- 101 (487)
T KOG0310|consen 69 -DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKSRV-------------------------------------------- 101 (487)
T ss_pred -cceeEEEe--ecCCeEEEccCCcCcEEEeccccHH--------------------------------------------
Confidence 77999999 6789999999999999999955421
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCC-EEEEe-cCCeEEEEeccCCCceee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
..+. +.+|..+|..+.|+|+++ .|++| +|+.+++||+.+... .
T Consensus 102 --------------------------------iLR~-~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~ 146 (487)
T KOG0310|consen 102 --------------------------------ILRQ-LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--Q 146 (487)
T ss_pred --------------------------------HHHH-HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--E
Confidence 0111 378999999999999754 56667 899999999986553 2
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
. .+.+|.+.|++.+|+|..+.++++|+.||.|++||++..... +..+ .|..+|.++.+
T Consensus 147 ~------~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~---v~el-------------nhg~pVe~vl~ 204 (487)
T KOG0310|consen 147 A------ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR---VVEL-------------NHGCPVESVLA 204 (487)
T ss_pred E------EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce---eEEe-------------cCCCceeeEEE
Confidence 1 578899999999999987689999999999999999986311 2222 25578999999
Q ss_pred ecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 350 ARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 350 s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
-|.|..+++++...|+|||+...++.+..+..|... |+|+++..++..|++|+-|+.|++||+.+
T Consensus 205 lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~Kt---------------VTcL~l~s~~~rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 205 LPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKT---------------VTCLRLASDSTRLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred cCCCCEEEEcCCCeEEEEEecCCceehhhhhcccce---------------EEEEEeecCCceEeecccccceEEEEccc
Confidence 999999999988899999999756666666656544 56999999999999999999999999665
Q ss_pred CceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 430 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 430 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
- +....+ ...++|-+++.+|++..++.|-.||.+-+
T Consensus 270 ~-Kvv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 270 Y-KVVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred e-EEEEee-ecccceeeEEecCCCceEEEecccceeee
Confidence 4 322222 45688999999999999999999999988
No 77
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=6.9e-28 Score=208.58 Aligned_cols=297 Identities=14% Similarity=0.231 Sum_probs=224.2
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcc-cc--cccccccccCCccceeeeee-ccCCCccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR-RD--LEMMDYSMSRHPEFRYKTEF-QSHEPEFDYL 106 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~ 106 (514)
...|.-+|.||+++|++++.++++.+|+|.-|++.+++...... +. +..+..++ ..- ++|.
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~---------k~~r~~h~------ 202 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPL---------KESRKGHV------ 202 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCC---------Cccccccc------
Confidence 35799999999999999999999999999999999888542111 10 11111111 001 2454
Q ss_pred cccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 107 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
..|.+++. ++||++|++|+.|..|.||+.++.+....
T Consensus 203 ------keil~~av--S~Dgkylatgg~d~~v~Iw~~~t~ehv~~----------------------------------- 239 (479)
T KOG0299|consen 203 ------KEILTLAV--SSDGKYLATGGRDRHVQIWDCDTLEHVKV----------------------------------- 239 (479)
T ss_pred ------ceeEEEEE--cCCCcEEEecCCCceEEEecCcccchhhc-----------------------------------
Confidence 77999999 78999999999999999999988652211
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCC
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~ 265 (514)
+.+|.+.|.+++|-.....|.++ .|++|++|+++...
T Consensus 240 ------------------------------------------~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 240 ------------------------------------------FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred ------------------------------------------ccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence 37899999999998877777777 99999999998433
Q ss_pred ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccccee
Q 010256 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (514)
.. .++.+|++.|.+|....-+ +.+-+|+.|+++++|++.... +-++.+|.+.+.
T Consensus 278 ~v--------etlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~ees-----------------qlifrg~~~sid 331 (479)
T KOG0299|consen 278 YV--------ETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEES-----------------QLIFRGGEGSID 331 (479)
T ss_pred HH--------HHHhCCccceeeechhccc-ceEEeccccceeEEEeccccc-----------------eeeeeCCCCCee
Confidence 22 2678999999999988877 677777899999999995432 123556668899
Q ss_pred EEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEE
Q 010256 346 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (514)
Q Consensus 346 ~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 424 (514)
+++|-.+ ..+++|++ |.|.+|++.. .+++.+.....+..+....+..+ +.|++++..|...++|+|+.+|.|++
T Consensus 332 cv~~In~-~HfvsGSdnG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~---~Witsla~i~~sdL~asGS~~G~vrL 406 (479)
T KOG0299|consen 332 CVAFIND-EHFVSGSDNGSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGN---FWITSLAVIPGSDLLASGSWSGCVRL 406 (479)
T ss_pred eEEEecc-cceeeccCCceEEEeeecc-cCceeEeeccccccCCccccccc---cceeeeEecccCceEEecCCCCceEE
Confidence 9999854 56777766 9999999997 88888776655544332222211 35779999999999999999999999
Q ss_pred EecCCCceee---eeecCCCcceeEEEECCCCCceeec
Q 010256 425 FGCSEGSAES---TTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 425 wd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
|.+..+-... ..+. -.+.|++++|+++|+.|++|
T Consensus 407 W~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 407 WKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred EEecCCccccceeeecc-cccEEEEEEEccCCCEEEEe
Confidence 9999873322 2222 46789999999999977666
No 78
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.8e-29 Score=198.80 Aligned_cols=245 Identities=20% Similarity=0.336 Sum_probs=194.9
Q ss_pred ccccceEEEEEcCC-CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 33 QEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 33 ~h~~~V~~~~~s~~-g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
.-.+.+..++|+++ .+.+++++.||+++|||+.... ..+..++.|+
T Consensus 58 d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s----------------------~Pi~~~kEH~----------- 104 (311)
T KOG0277|consen 58 DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS----------------------KPIHKFKEHK----------- 104 (311)
T ss_pred ecccceeEeeecCCCcceEEEEecCceEEEeccCCCC----------------------cchhHHHhhh-----------
Confidence 34678999999995 4678888999999999953221 2556788888
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..|.++.|++ .++..+++++-|++||+|+...++...
T Consensus 105 -~EV~Svdwn~-~~r~~~ltsSWD~TiKLW~~~r~~Sv~----------------------------------------- 141 (311)
T KOG0277|consen 105 -REVYSVDWNT-VRRRIFLTSSWDGTIKLWDPNRPNSVQ----------------------------------------- 141 (311)
T ss_pred -hheEEecccc-ccceeEEeeccCCceEeecCCCCcceE-----------------------------------------
Confidence 7799999985 445678888999999999976543211
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCceee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+ ..+|...|...+|+|. .+.++++ .|+++++||++..+...
T Consensus 142 -----------------------------------T-f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~- 184 (311)
T KOG0277|consen 142 -----------------------------------T-FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM- 184 (311)
T ss_pred -----------------------------------e-ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCcee-
Confidence 1 2678899999999996 7788888 89999999999776543
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.++.|...|.++.|+.-..+++++|+.|+.|+.||+++-+.. ...+.+|.-.|+.++|
T Consensus 185 -------~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p---------------l~eL~gh~~AVRkvk~ 242 (311)
T KOG0277|consen 185 -------SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP---------------LFELNGHGLAVRKVKF 242 (311)
T ss_pred -------EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc---------------ceeecCCceEEEEEec
Confidence 356688999999999877799999999999999999986532 2235667789999999
Q ss_pred ecCC-CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC-CCCEEEEEeCCCcEEEEe
Q 010256 350 ARNG-RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFG 426 (514)
Q Consensus 350 s~~g-~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd 426 (514)
||.. .+|++++. .+++|||...+...+.+...|.+.+ ..+.||+ ++.++|+.+.|..++||+
T Consensus 243 Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv---------------~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 243 SPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFV---------------CGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred CcchhhHhhhccccceEEecccccchhhhhhhhccceEE---------------eccccccccCceeeecccccceeeec
Confidence 9965 46667775 9999999987566777888787763 2677876 667899999999999998
Q ss_pred c
Q 010256 427 C 427 (514)
Q Consensus 427 ~ 427 (514)
.
T Consensus 308 p 308 (311)
T KOG0277|consen 308 P 308 (311)
T ss_pred c
Confidence 4
No 79
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=6.4e-26 Score=198.59 Aligned_cols=390 Identities=12% Similarity=0.174 Sum_probs=275.0
Q ss_pred cccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceee
Q 010256 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (514)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (514)
..+|+..+- ....+-..-.+.|....|+|.+.-|+.....|.+..|++.++... +..
T Consensus 182 lSVWdWqk~---~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~--------------------k~~ 238 (626)
T KOG2106|consen 182 LSVWDWQKK---AKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLV--------------------KRQ 238 (626)
T ss_pred cchhhchhh---hccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceE--------------------EEe
Confidence 346777662 122223344578889999996655555556788999998876642 122
Q ss_pred eeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccccc
Q 010256 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (514)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (514)
..|+.++ ..-|.|++|. ++| -+++|..+|.|.||+..+.+..+....+ .+.|+
T Consensus 239 ~~fek~e-----------kk~Vl~v~F~--eng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH--------~ggv~----- 291 (626)
T KOG2106|consen 239 GIFEKRE-----------KKFVLCVTFL--ENG-DVITGDSGGNILIWSKGTNRISKQVHAH--------DGGVF----- 291 (626)
T ss_pred ecccccc-----------ceEEEEEEEc--CCC-CEEeecCCceEEEEeCCCceEEeEeeec--------CCceE-----
Confidence 3355554 2559999995 444 4889999999999999887766554433 46677
Q ss_pred CCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccc----cccccc----------------cc---------
Q 010256 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQ----ETNLVA----------------GC--------- 224 (514)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~----~~~~~~----------------~~--------- 224 (514)
+++...+|.. ++|+.|..|..||-.... +..... ..
T Consensus 292 --~L~~lr~Gtl-------------lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~ 356 (626)
T KOG2106|consen 292 --SLCMLRDGTL-------------LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTL 356 (626)
T ss_pred --EEEEecCccE-------------eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeee
Confidence 7888888887 559999999998821111 000000 00
Q ss_pred ---cccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEE
Q 010256 225 ---RRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 300 (514)
Q Consensus 225 ---~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~ 300 (514)
......+|....+.++.+|+.+.++++ .|+.+++|+ + .+..... ....++.++.|+|.| .++.
T Consensus 357 ~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k~~wt~---------~~~d~~~~~~fhpsg--~va~ 423 (626)
T KOG2106|consen 357 ENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HKLEWTK---------IIEDPAECADFHPSG--VVAV 423 (626)
T ss_pred cCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C-CceeEEE---------EecCceeEeeccCcc--eEEE
Confidence 011125788888999999999999998 999999999 2 3433322 136778999999998 8999
Q ss_pred EecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeee
Q 010256 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF 379 (514)
Q Consensus 301 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~ 379 (514)
|+..|...+.|.++...+. .. .. ..+++.++|+|+|.+||.|+. +.|+||.+...+......
T Consensus 424 Gt~~G~w~V~d~e~~~lv~-----~~-----------~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~ 486 (626)
T KOG2106|consen 424 GTATGRWFVLDTETQDLVT-----IH-----------TD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRV 486 (626)
T ss_pred eeccceEEEEecccceeEE-----EE-----------ec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEe
Confidence 9999999999998855421 11 11 368999999999999999975 999999998766665555
Q ss_pred eeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee------------------cCCC
Q 010256 380 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL------------------EASK 441 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------~~~~ 441 (514)
..+.+ . .|+.+.||+|+++|.+-+.|-.|..|..... +..... ..+.
T Consensus 487 ~k~~g-s-------------~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~-~~~ts~kDvkW~t~~c~lGF~v~g~s~~ 551 (626)
T KOG2106|consen 487 GKCSG-S-------------PITHLDWSSDSQFLVSNSGDYEILYWKPSEC-KQITSVKDVKWATYTCTLGFEVFGGSDG 551 (626)
T ss_pred eeecC-c-------------eeEEeeecCCCceEEeccCceEEEEEccccC-cccceecceeeeeeEEEEEEEEecccCC
Confidence 44443 1 1558999999999999999999999954322 111111 1355
Q ss_pred cceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEE-EEecCcEEEEe
Q 010256 442 NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIA-CAASNSLYMYY 513 (514)
Q Consensus 442 ~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~-~~~~~~~~i~~ 513 (514)
..+..++-+.+++++|+|.+.|.|++.+-.-............|++.|++++|..+...|. ++.+.+++.|.
T Consensus 552 t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 552 TDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred chHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence 6677788889999999999999999943332222233344557999999999988777666 55578888885
No 80
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1e-27 Score=189.53 Aligned_cols=276 Identities=19% Similarity=0.277 Sum_probs=222.9
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
++|..++| +.+|+|.++++.|++|++|+...+.+.+.
T Consensus 18 gaV~avry--N~dGnY~ltcGsdrtvrLWNp~rg~likt----------------------------------------- 54 (307)
T KOG0316|consen 18 GAVRAVRY--NVDGNYCLTCGSDRTVRLWNPLRGALIKT----------------------------------------- 54 (307)
T ss_pred cceEEEEE--ccCCCEEEEcCCCceEEeecccccceeee-----------------------------------------
Confidence 89999999 78899999999999999999887754332
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+ .+|...|.+++.+.|+..|++| .|..+.+||+++++...
T Consensus 55 -----------------------------------Y-sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R--- 95 (307)
T KOG0316|consen 55 -----------------------------------Y-SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDR--- 95 (307)
T ss_pred -----------------------------------e-cCCCceeeeccccccccccccCCCCceEEEEEcccCeeee---
Confidence 2 5677889999999999999999 99999999999887664
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.+.+|.+.|+.++|+.+. ..+++|+.|..+++||-++... ++++.++. -...|.++..+
T Consensus 96 -----r~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~--ePiQilde------------a~D~V~Si~v~- 154 (307)
T KOG0316|consen 96 -----RFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSF--EPIQILDE------------AKDGVSSIDVA- 154 (307)
T ss_pred -----ecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCC--Cccchhhh------------hcCceeEEEec-
Confidence 578999999999999988 8999999999999999988653 22444433 33679988886
Q ss_pred CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
+..|++|+ ||+++.||++. ++....+.+|. |++++|++|++....++-|+.+++.|-++|
T Consensus 155 -~heIvaGS~DGtvRtydiR~-G~l~sDy~g~p-----------------it~vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 155 -EHEIVAGSVDGTVRTYDIRK-GTLSSDYFGHP-----------------ITSVSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred -ccEEEeeccCCcEEEEEeec-ceeehhhcCCc-----------------ceeEEecCCCCEEEEeeccceeeecccchh
Confidence 66788876 59999999997 77666665554 449999999999999999999999999998
Q ss_pred ceeeeeecCCCcceeE--EEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccc-eEEEEEcCCCCEEEEEecC
Q 010256 431 SAESTTLEASKNPMRR--QVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMK-LLHLAWHPSENSIACAASN 507 (514)
Q Consensus 431 ~~~~~~~~~~~~~v~~--~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~-v~~~~~spd~~~l~~~~~~ 507 (514)
++++.+++|.+.-+. .+++.....+++||+||.|.+ |.+....+.....-+... |.+++++|.-.-+.++...
T Consensus 216 -klL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~---wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~ 291 (307)
T KOG0316|consen 216 -KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYF---WDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH 291 (307)
T ss_pred -HHHHHhcccccceeeeeeeecccceeEEeccCCceEEE---EEeccceeeeeeccCCceeEEeeecccCccceeEecCC
Confidence 556889999876554 456677889999999999999 322221122122223344 7999999999999999999
Q ss_pred cEEEEeC
Q 010256 508 SLYMYYA 514 (514)
Q Consensus 508 ~~~i~~~ 514 (514)
+.+.|++
T Consensus 292 ~~~~~~~ 298 (307)
T KOG0316|consen 292 GDLFWYQ 298 (307)
T ss_pred ceeceee
Confidence 8888864
No 81
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.8e-27 Score=215.48 Aligned_cols=364 Identities=15% Similarity=0.186 Sum_probs=239.3
Q ss_pred EEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEE
Q 010256 39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (514)
Q Consensus 39 ~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i 118 (514)
-++.|++..+.|.+...|..++|||+.+-...+.+- .+-.|. ..|..+
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~--------------------s~lyHS------------~ciW~V 375 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCS--------------------SMLYHS------------ACIWDV 375 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEecccccccccee--------------------eeeecc------------ceeeee
Confidence 467899999999999999999999998766543321 222343 344444
Q ss_pred EEee----------CCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 119 RWCQ----------SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 119 ~~~~----------~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
.-.| -+. ..|.+++.|++||+|++..+.-..+..-+.-. .....+.+..+...+
T Consensus 376 e~~p~nv~~~~~aclp~-~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils-------------~~l~ki~y~d~~~q~-- 439 (1080)
T KOG1408|consen 376 ENLPCNVHSPTAACLPR-GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILS-------------ANLSKIPYEDSTQQI-- 439 (1080)
T ss_pred ccccccccCcccccCCc-cceeEecCCCcEEEeecccccccceeecccch-------------hhhhcCccccCchhh--
Confidence 4333 122 35899999999999999864221111111000 000011111111111
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
+ .|...-++| +.... .......+++++.+|+|++|++| ..|++++|++...+..
T Consensus 440 ----------~---~d~~~~~fd-----------ka~~s-~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~ 494 (1080)
T KOG1408|consen 440 ----------M---HDASAGIFD-----------KALVS-TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT 494 (1080)
T ss_pred ----------h---hhccCCccc-----------ccchh-hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhh
Confidence 0 000011111 00000 13344679999999999999999 8999999999855443
Q ss_pred eeeeccCCCcccccCCceEEEEEecC--CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccccee
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (514)
. .++.|...|.++.|+.- +.++|++++.|+-|++||....... ...+.+|...|+
T Consensus 495 ~--------~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l---------------~qtld~HSssIT 551 (1080)
T KOG1408|consen 495 C--------FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL---------------VQTLDGHSSSIT 551 (1080)
T ss_pred h--------heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch---------------hhhhccccccee
Confidence 2 46789999999999842 2368999999999999998664432 234667889999
Q ss_pred EEEEecCC--CEEEE-EeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcE
Q 010256 346 DIKFARNG--RHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (514)
Q Consensus 346 ~~~~s~~g--~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (514)
++.|-..| ..+++ |.|.. ..|+..........+..|.....+ .. ++.++..|..+++++++.|..|
T Consensus 552 svKFa~~gln~~MiscGADks-imFr~~qk~~~g~~f~r~t~t~~k-------tT---lYDm~Vdp~~k~v~t~cQDrni 620 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKS-IMFRVNQKASSGRLFPRHTQTLSK-------TT---LYDMAVDPTSKLVVTVCQDRNI 620 (1080)
T ss_pred EEEEeecCCceEEEeccCchh-hheehhccccCceecccccccccc-------ce---EEEeeeCCCcceEEEEecccce
Confidence 99999877 45555 55543 344443212222333333332211 11 3489999999999999999999
Q ss_pred EEEecCCCceeeeeecC---CCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCC
Q 010256 423 RVFGCSEGSAESTTLEA---SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 499 (514)
Q Consensus 423 ~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~ 499 (514)
+||++++++. .+.+++ |.+..-.+...|.|.|||+...|+++.+++-- ..+.....++|...|+.+.|.+|-+
T Consensus 621 rif~i~sgKq-~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~---sgEcvA~m~GHsE~VTG~kF~nDCk 696 (1080)
T KOG1408|consen 621 RIFDIESGKQ-VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFV---SGECVAQMTGHSEAVTGVKFLNDCK 696 (1080)
T ss_pred EEEeccccce-eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEec---cchhhhhhcCcchheeeeeecccch
Confidence 9999999854 466664 44556678889999999999999999992211 1123345567999999999999999
Q ss_pred EEEE-EecCcEEEEe
Q 010256 500 SIAC-AASNSLYMYY 513 (514)
Q Consensus 500 ~l~~-~~~~~~~i~~ 513 (514)
.|++ ++++.+|||.
T Consensus 697 HlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 697 HLISVSGDGCIFVWK 711 (1080)
T ss_pred hheeecCCceEEEEE
Confidence 8884 5588899996
No 82
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=8.9e-28 Score=210.67 Aligned_cols=300 Identities=15% Similarity=0.212 Sum_probs=210.3
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.++++ .+.|..|++|+.|.+|++||+..-....
T Consensus 168 k~Vsal~~--Dp~GaR~~sGs~Dy~v~~wDf~gMdas~------------------------------------------ 203 (641)
T KOG0772|consen 168 KIVSALAV--DPSGARFVSGSLDYTVKFWDFQGMDASM------------------------------------------ 203 (641)
T ss_pred eEEEEeee--cCCCceeeeccccceEEEEecccccccc------------------------------------------
Confidence 77999999 6788899999999999999987532100
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+ ..+.+.......|+++.|++.|..|++. .....+++|-. +....+..
T Consensus 204 ---------------~---------------~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd-G~~~~e~~ 252 (641)
T KOG0772|consen 204 ---------------R---------------SFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD-GFEIVEFS 252 (641)
T ss_pred ---------------h---------------hhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC-Cceeeeee
Confidence 0 0011113334568899999998888877 78889999876 43333332
Q ss_pred ccC-----CCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 272 DVK-----PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 272 ~~~-----~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
... .....+|...+++.+|+|.....|++++.||++|+||+...+.. .++++... ..+..-+++.
T Consensus 253 KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q---~qVik~k~-------~~g~Rv~~ts 322 (641)
T KOG0772|consen 253 KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ---LQVIKTKP-------AGGKRVPVTS 322 (641)
T ss_pred ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh---eeEEeecc-------CCCcccCcee
Confidence 111 12457899999999999998889999999999999999876543 33333322 1223357899
Q ss_pred EEEecCCCEEEEE-eCCeEEEEEccCCC-Cc-eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEE
Q 010256 347 IKFARNGRHILSR-DYMTLKLWDINMDS-GP-VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (514)
Q Consensus 347 ~~~s~~g~~l~~~-~~~~i~iwd~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (514)
++|+|+|++||+| .||.|.+|+..... .+ ...-..|.. -.+|++++||+||++|++-+.|++++
T Consensus 323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~-------------g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP-------------GQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCC-------------CCceeEEEeccccchhhhccCCCcee
Confidence 9999999999987 56999999976411 11 122233332 12366999999999999999999999
Q ss_pred EEecCCCceeeeeecCC--CcceeEEEECCCCCceeecCC------CCeEEEeeCCCCCccccCCcccccccceEEEEEc
Q 010256 424 VFGCSEGSAESTTLEAS--KNPMRRQVQTPSRPSRPLGSL------SGVVRRVKGADNSALDANGNAFDFSMKLLHLAWH 495 (514)
Q Consensus 424 iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~s~------d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s 495 (514)
+||+...++.+.+..+- ..+-+.++|+|+.++|++|+. .+++.+++...+. ......-....|-.+.||
T Consensus 390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d---~v~ki~i~~aSvv~~~Wh 466 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD---TVYKIDISTASVVRCLWH 466 (641)
T ss_pred eeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee---eEEEecCCCceEEEEeec
Confidence 99999776555444433 345678999999999999864 2445553332222 111111126788999999
Q ss_pred CCCCEEEEEe-cCcEEEEe
Q 010256 496 PSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 496 pd~~~l~~~~-~~~~~i~~ 513 (514)
|.-+.|.+++ ++++.+||
T Consensus 467 pkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 467 PKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred chhhheeeecCCCceEEEE
Confidence 9988877665 66777776
No 83
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.8e-26 Score=177.89 Aligned_cols=307 Identities=18% Similarity=0.174 Sum_probs=222.4
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
...+..|.+++|+|.|.+.|+|+...+.+|-....-.. + .++...+..|.......-+.|
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~-------~-r~~hea~~~pp~v~~kr~khh------------ 88 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALID-------L-RHAHEAAKQPPSVLCKRNKHH------------ 88 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccC-------c-ccccccccCCCeEEeeecccc------------
Confidence 34567899999999999999999999988876532110 1 111111122222222223334
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
.+.|.|.+| ++.|+++++|+.|++|++..+....+.
T Consensus 89 kgsiyc~~w--s~~geliatgsndk~ik~l~fn~dt~~------------------------------------------ 124 (350)
T KOG0641|consen 89 KGSIYCTAW--SPCGELIATGSNDKTIKVLPFNADTCN------------------------------------------ 124 (350)
T ss_pred CccEEEEEe--cCccCeEEecCCCceEEEEeccccccc------------------------------------------
Confidence 499999999 678899999999999998766543211
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC----CCEEEEe--cCCeEEEEeccCCC
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD----GETFISA--DDLRINLWNLEISN 265 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~--~d~~i~iwd~~~~~ 265 (514)
++|- +. . +.-|.+.|..++|..+ +.+|+++ .|..|++-|..+++
T Consensus 125 -------~~g~--------------dl--------e-~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 125 -------ATGH--------------DL--------E-FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred -------ccCc--------------ce--------e-eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 0000 00 0 2567889999999654 6678876 57888888877655
Q ss_pred ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccccee
Q 010256 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (514)
... .+.+|.+.|.++- +-++ .+|++|+.|.+|++||++-...+...-..+..... ..+.|.
T Consensus 175 ~~~--------a~sghtghilaly-swn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gl---------essava 235 (350)
T KOG0641|consen 175 GFH--------ALSGHTGHILALY-SWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGL---------ESSAVA 235 (350)
T ss_pred cce--------eecCCcccEEEEE-EecC-cEEEccCCCceEEEEeeeccceeeeccCcccCCCc---------ccceeE
Confidence 442 5678998888773 3345 79999999999999999987653221122221110 125799
Q ss_pred EEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEE
Q 010256 346 DIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (514)
Q Consensus 346 ~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 424 (514)
+++..|.|++|++|. |....+||++- +++++.+..|...+. ++.|+|...||.+++.|..|++
T Consensus 236 av~vdpsgrll~sg~~dssc~lydirg-~r~iq~f~phsadir---------------~vrfsp~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 236 AVAVDPSGRLLASGHADSSCMLYDIRG-GRMIQRFHPHSADIR---------------CVRFSPGAHYLLTCSYDMKIKL 299 (350)
T ss_pred EEEECCCcceeeeccCCCceEEEEeeC-CceeeeeCCCcccee---------------EEEeCCCceEEEEecccceEEE
Confidence 999999999999995 48899999996 899999988876533 9999999999999999999999
Q ss_pred EecCCC---ceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 425 FGCSEG---SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 425 wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
-|++.. +.....+..|.+.+-.+.|+|..--+++.|.|+++.+
T Consensus 300 tdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tl 345 (350)
T KOG0641|consen 300 TDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATL 345 (350)
T ss_pred eecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEE
Confidence 998742 1122556689999999999999998999999999888
No 84
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=197.73 Aligned_cols=322 Identities=16% Similarity=0.214 Sum_probs=231.9
Q ss_pred cccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
+..+|.+.|..++.......+.+++.|.+.+||.+++++ ++.++.||.
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-----------------------CL~~Y~GH~--------- 190 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-----------------------CLATYTGHT--------- 190 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeecccc-----------------------ceeeecccc---------
Confidence 456999999999999888899999999999999999887 567899999
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
+.|++|.|++ .+.++++++.|++-.||...-.-....... +......... ..+ |...
T Consensus 191 ---GSVNsikfh~--s~~L~lTaSGD~taHIW~~av~~~vP~~~a---~~~hSsEeE~----------e~s-De~~---- 247 (481)
T KOG0300|consen 191 ---GSVNSIKFHN--SGLLLLTASGDETAHIWKAAVNWEVPSNNA---PSDHSSEEEE----------EHS-DEHN---- 247 (481)
T ss_pred ---cceeeEEecc--ccceEEEccCCcchHHHHHhhcCcCCCCCC---CCCCCchhhh----------hcc-cccc----
Confidence 9999999965 455999999999999997321100000000 0000000000 000 0000
Q ss_pred cCCCCCCcccCCCCC-CcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce
Q 010256 190 FGCASNDSSFPPGGV-SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
.+.--.-..| .+|++ +... +.+|...|.+..|...|+.++++ .|.+..+||++++...
T Consensus 248 -----~d~d~~~~sD~~tiRv--------------Pl~~-ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v 307 (481)
T KOG0300|consen 248 -----RDTDSSEKSDGHTIRV--------------PLMR-LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVV 307 (481)
T ss_pred -----cccccccccCCceeee--------------eeee-eeccccceEehhhhcCcceeeeeeccccceeeeeccCcee
Confidence 0000000111 13332 2222 37899999999999999999999 8999999999977654
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
. .+.+|....+.++-+|.. +++++.+.|.+.++||++..-. . ...|++|...|+++
T Consensus 308 ~--------~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~------s---------V~VFQGHtdtVTS~ 363 (481)
T KOG0300|consen 308 N--------ILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQ------S---------VAVFQGHTDTVTSV 363 (481)
T ss_pred c--------cccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcc------e---------eeeecccccceeEE
Confidence 3 578999999999999998 8999999999999999984211 1 34577888999999
Q ss_pred EEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEe
Q 010256 348 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (514)
Q Consensus 348 ~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 426 (514)
.|..+. .+++|+| .+|+|||+++-..++.++...... ..++.+..+..|+.--++..|++||
T Consensus 364 vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~----------------NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 364 VFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPA----------------NRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred EEecCC-ceeecCCCceEEEeeeccccCcceeeecCCcc----------------ceeEeecCCceEEeccCCceEEEEe
Confidence 999765 4556655 999999999867788888765543 2688888888999888889999999
Q ss_pred cCCCcee---eeeecCCCcceeEEEECCCCC--ceeecCCCCeEEE
Q 010256 427 CSEGSAE---STTLEASKNPMRRQVQTPSRP--SRPLGSLSGVVRR 467 (514)
Q Consensus 427 ~~~~~~~---~~~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~v~i 467 (514)
+...... ...-++|..-|.+.+|..+.. -|.+++.|+.+.-
T Consensus 427 lnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~g 472 (481)
T KOG0300|consen 427 LNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAG 472 (481)
T ss_pred cCCCccccCCcccccccceeeeeeeccccCcccccccccccceeee
Confidence 9743211 123458999999999975543 4678888876543
No 85
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3e-27 Score=214.44 Aligned_cols=279 Identities=16% Similarity=0.279 Sum_probs=217.1
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccccee
Q 010256 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (514)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (514)
..+-+.|+ ..+.||+|. +..|++|+..+++.. .+..+ ++ +.|+
T Consensus 179 Y~nlldWs-s~n~laVal-g~~vylW~~~s~~v~---------------------~l~~~--~~------------~~vt 221 (484)
T KOG0305|consen 179 YLNLLDWS-SANVLAVAL-GQSVYLWSASSGSVT---------------------ELCSF--GE------------ELVT 221 (484)
T ss_pred hhhHhhcc-cCCeEEEEe-cceEEEEecCCCceE---------------------EeEec--CC------------CceE
Confidence 34457788 455788774 447999998877642 12222 23 7799
Q ss_pred EEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCC
Q 010256 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (514)
Q Consensus 117 ~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (514)
++.| +++|.+|++|..+|.|.|||..+.+........ ..+.|. +++|. +..+
T Consensus 222 Sv~w--s~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~-------h~~rvg-------~laW~--~~~l---------- 273 (484)
T KOG0305|consen 222 SVKW--SPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS-------HASRVG-------SLAWN--SSVL---------- 273 (484)
T ss_pred EEEE--CCCCCEEEEeecCCeEEEEehhhccccccccCC-------cCceeE-------EEecc--CceE----------
Confidence 9999 678889999999999999999887655444431 123343 66776 4444
Q ss_pred cccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCC
Q 010256 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (514)
Q Consensus 197 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 275 (514)
.+|+.++.|.++| +...+.. .. .+.+|...|..++|++|+.++|+| .|+.+.|||....+..+
T Consensus 274 --ssGsr~~~I~~~d-vR~~~~~-----~~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~------- 337 (484)
T KOG0305|consen 274 --SSGSRDGKILNHD-VRISQHV-----VS-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF------- 337 (484)
T ss_pred --EEecCCCcEEEEE-Eecchhh-----hh-hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE-------
Confidence 8899999999999 3332221 11 248899999999999999999999 99999999996555443
Q ss_pred CcccccCCceEEEEEecCCCcEEEEEe--cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 276 ANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 276 ~~~~~~~~~i~~v~~~p~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
.+..|.+.|.+++|+|....+||+|+ .|+.|++||..++..+ ...... +.|++|.|++..
T Consensus 338 -~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i----~~vdtg-------------sQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 338 -TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI----DSVDTG-------------SQVCSLIWSKKY 399 (484)
T ss_pred -EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe----cccccC-------------CceeeEEEcCCC
Confidence 56789999999999998878999876 4999999999998764 222222 579999999998
Q ss_pred CEEEEE---eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 354 RHILSR---DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 354 ~~l~~~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
+.|+++ ++..|.||+..+ .+.+..+.+|... |..++++|||..+++|+.|.++++|++-..
T Consensus 400 kEi~sthG~s~n~i~lw~~ps-~~~~~~l~gH~~R---------------Vl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 400 KELLSTHGYSENQITLWKYPS-MKLVAELLGHTSR---------------VLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CEEEEecCCCCCcEEEEeccc-cceeeeecCCcce---------------eEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 878774 238999999998 8889999999876 458999999999999999999999998753
No 86
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.1e-27 Score=221.24 Aligned_cols=300 Identities=14% Similarity=0.164 Sum_probs=195.2
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCcc--ccCCcceecccccCCceeeccCCCcccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEK--AAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
+.+.|.++.| ++||+|||+|+.|+.|+||.+...+............. ..+++.+. .+.-++ +..-
T Consensus 266 h~gaIw~mKF--S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~-------p~~s~~-~~~~-- 333 (712)
T KOG0283|consen 266 HKGAIWAMKF--SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIE-------PSTSSE-EKIS-- 333 (712)
T ss_pred cCCcEEEEEe--CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccC-------cccccc-cccc--
Confidence 3499999999 78999999999999999999987543221111100000 00000000 000000 0000
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
......-.+.....+.+.+ .......++...| .||.+.|.++.|+.++ +|+++ .|.+|+||++.... +
T Consensus 334 ----~~~s~~~~~~~s~~~~~p~----~~f~f~ekP~~ef-~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~-C 402 (712)
T KOG0283|consen 334 ----SRTSSSRKGSQSPCVLLPL----KAFVFSEKPFCEF-KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKE-C 402 (712)
T ss_pred ----ccccccccccCCccccCCC----ccccccccchhhh-hccchhheecccccCC-eeEeccccccEEeecCCCcc-e
Confidence 0000001111111122111 1122233455555 8999999999999877 55555 99999999999554 4
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
+. .-.|.+.|+||+|+|-..++|++|+-|+.+|||++...+.. .-.+.+ .-|+++
T Consensus 403 L~--------~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv----~W~Dl~-------------~lITAv 457 (712)
T KOG0283|consen 403 LK--------VFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV----DWNDLR-------------DLITAV 457 (712)
T ss_pred ee--------EEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE----eehhhh-------------hhheeE
Confidence 33 23499999999999987799999999999999999886642 111222 479999
Q ss_pred EEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC-CEEEEEeCCCcEEEE
Q 010256 348 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVF 425 (514)
Q Consensus 348 ~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw 425 (514)
+|+|||++.+.|+. |.+++|+... .+.......+.....+. .-..|+.+.|.|.. ..+++.+.|.+||||
T Consensus 458 cy~PdGk~avIGt~~G~C~fY~t~~-lk~~~~~~I~~~~~Kk~-------~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~ 529 (712)
T KOG0283|consen 458 CYSPDGKGAVIGTFNGYCRFYDTEG-LKLVSDFHIRLHNKKKK-------QGKRITGLQFFPGDPDEVLVTSNDSRIRIY 529 (712)
T ss_pred EeccCCceEEEEEeccEEEEEEccC-CeEEEeeeEeeccCccc-------cCceeeeeEecCCCCCeEEEecCCCceEEE
Confidence 99999999999987 9999999985 55544443332211100 01136688887643 346667899999999
Q ss_pred ecCCCceeeeeecCCCcc--eeEEEECCCCCceeecCCCCeEEE
Q 010256 426 GCSEGSAESTTLEASKNP--MRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 426 d~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|.... .+...++++... -....|+.||++|+++++|..|++
T Consensus 530 d~~~~-~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 530 DGRDK-DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred eccch-hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 99654 455777766543 345678889999999999999999
No 87
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=4.4e-26 Score=215.87 Aligned_cols=258 Identities=18% Similarity=0.246 Sum_probs=179.5
Q ss_pred ecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEe
Q 010256 53 GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLS 132 (514)
Q Consensus 53 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~ 132 (514)
|+.++.|++|+..... .+..+.+|. ..|.+++|+|. ++.+|++|
T Consensus 50 GG~~gvI~L~~~~r~~-----------------------~v~~L~gH~------------~~V~~lafsP~-~~~lLASg 93 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-----------------------PVIKLKGHT------------SSILDLQFNPC-FSEILASG 93 (568)
T ss_pred CCceeEEEeeecCCCc-----------------------eEEEEcCCC------------CCEEEEEEcCC-CCCEEEEE
Confidence 4566778888764322 446788998 88999999653 25699999
Q ss_pred eCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEecee
Q 010256 133 TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVV 212 (514)
Q Consensus 133 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~ 212 (514)
+.|++|++||+.++..... . .
T Consensus 94 S~DgtIrIWDi~t~~~~~~-~---------------------------------------------i------------- 114 (568)
T PTZ00420 94 SEDLTIRVWEIPHNDESVK-E---------------------------------------------I------------- 114 (568)
T ss_pred eCCCeEEEEECCCCCcccc-c---------------------------------------------c-------------
Confidence 9999999999976421000 0 0
Q ss_pred eccccccccccccccccccCccCeEEEEECCCCCEE-EEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEE
Q 010256 213 VTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF 290 (514)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 290 (514)
..+... +.+|...|.+++|+|++..+ +++ .|++|++||+++++.... +. +...|.+++|
T Consensus 115 ---------~~p~~~-L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~--------i~-~~~~V~Slsw 175 (568)
T PTZ00420 115 ---------KDPQCI-LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ--------IN-MPKKLSSLKW 175 (568)
T ss_pred ---------ccceEE-eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE--------Ee-cCCcEEEEEE
Confidence 000011 36788999999999998764 677 899999999997654432 22 4567999999
Q ss_pred ecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce-----eEEEEecCCCEEEEEe-C---
Q 010256 291 HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI-----SDIKFARNGRHILSRD-Y--- 361 (514)
Q Consensus 291 ~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~s~~g~~l~~~~-~--- 361 (514)
+|+| .+|++++.|+.|+|||++++... ..+.. |.+.+ ....|++++.+|++++ +
T Consensus 176 spdG-~lLat~s~D~~IrIwD~Rsg~~i----~tl~g------------H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~ 238 (568)
T PTZ00420 176 NIKG-NLLSGTCVGKHMHIIDPRKQEIA----SSFHI------------HDGGKNTKNIWIDGLGGDDNYILSTGFSKNN 238 (568)
T ss_pred CCCC-CEEEEEecCCEEEEEECCCCcEE----EEEec------------ccCCceeEEEEeeeEcCCCCEEEEEEcCCCC
Confidence 9999 89999999999999999998753 33333 43433 3334568888888743 3
Q ss_pred -CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC
Q 010256 362 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 440 (514)
Q Consensus 362 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 440 (514)
+.|+|||++...+++..+..+..... ++.....++|.++++|+.|+.|++|++..+......--.+
T Consensus 239 ~R~VkLWDlr~~~~pl~~~~ld~~~~~-------------L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s 305 (568)
T PTZ00420 239 MREMKLWDLKNTTSALVTMSIDNASAP-------------LIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKS 305 (568)
T ss_pred ccEEEEEECCCCCCceEEEEecCCccc-------------eEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeeccccc
Confidence 37999999964667766644432210 1122234568899999999999999998763222222235
Q ss_pred CcceeEEEECCCCC
Q 010256 441 KNPMRRQVQTPSRP 454 (514)
Q Consensus 441 ~~~v~~~~~~~~~~ 454 (514)
..+...++|.|...
T Consensus 306 ~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 306 CSPFRSFGFLPKQI 319 (568)
T ss_pred CCCccceEEccccc
Confidence 67888999998743
No 88
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=2.9e-26 Score=234.44 Aligned_cols=259 Identities=14% Similarity=0.225 Sum_probs=191.2
Q ss_pred cccccceEEEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 32 ~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+...|.+++|+| ++.+||+++.||.|+|||+.+++ ....+.+|.
T Consensus 529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-----------------------~~~~~~~H~---------- 575 (793)
T PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ-----------------------LVTEMKEHE---------- 575 (793)
T ss_pred ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-----------------------EEEEecCCC----------
Confidence 34567899999998 57899999999999999987665 446678888
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|++++|+| .++.+|++++.|++|++||+.++......
T Consensus 576 --~~V~~l~~~p-~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-------------------------------------- 614 (793)
T PLN00181 576 --KRVWSIDYSS-ADPTLLASGSDDGSVKLWSINQGVSIGTI-------------------------------------- 614 (793)
T ss_pred --CCEEEEEEcC-CCCCEEEEEcCCCEEEEEECCCCcEEEEE--------------------------------------
Confidence 8899999964 35679999999999999999876532211
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEEC-CCCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SDGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
. +...+.++.|+ +++.+|++| .|+.|++||++..+...
T Consensus 615 ---------------------------------------~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~ 654 (793)
T PLN00181 615 ---------------------------------------K-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPL 654 (793)
T ss_pred ---------------------------------------e-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccc
Confidence 1 11357788885 579999999 99999999998654322
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
. .+.+|...|.++.|. ++ ..|++++.|+.|++||++.+..... ......+.+|...+..++
T Consensus 655 ~-------~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~~----------~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 655 C-------TMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGIN----------ETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred e-------EecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccccC----------CcceEEEcCCCCCeeEEE
Confidence 1 456789999999997 45 6899999999999999976421000 001223566778899999
Q ss_pred EecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccc-cccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEe
Q 010256 349 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH-LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (514)
Q Consensus 349 ~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 426 (514)
|+|++.+|++|+. +.|++|+... ..++..+..... ...... ....-..|.+++|+|++.+|++|+.||.|+||+
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~-~~~~~s~~~~~~~~~~~~~---~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAF-PMPVLSYKFKTIDPVSGLE---VDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCC-CCceEEEecccCCcccccc---cCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9999999999875 9999999875 444433322111 000000 001111256999999999999999999999998
Q ss_pred c
Q 010256 427 C 427 (514)
Q Consensus 427 ~ 427 (514)
+
T Consensus 792 ~ 792 (793)
T PLN00181 792 M 792 (793)
T ss_pred c
Confidence 6
No 89
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.2e-26 Score=185.48 Aligned_cols=289 Identities=15% Similarity=0.183 Sum_probs=215.4
Q ss_pred eeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccC
Q 010256 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (514)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (514)
.++||+ .+++.|.| +.+|.+|++++.|.++.+|--.+|+..-
T Consensus 5 ~l~GHE------------RplTqiKy--N~eGDLlFscaKD~~~~vw~s~nGerlG------------------------ 46 (327)
T KOG0643|consen 5 LLQGHE------------RPLTQIKY--NREGDLLFSCAKDSTPTVWYSLNGERLG------------------------ 46 (327)
T ss_pred ccccCc------------cccceEEe--cCCCcEEEEecCCCCceEEEecCCceee------------------------
Confidence 468898 89999999 6788899999999999999776665221
Q ss_pred CceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cC
Q 010256 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD 253 (514)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d 253 (514)
+ ..+|++.|+++..+.+.+.+++| .|
T Consensus 47 ----------------------------------------------------t-y~GHtGavW~~Did~~s~~liTGSAD 73 (327)
T KOG0643|consen 47 ----------------------------------------------------T-YDGHTGAVWCCDIDWDSKHLITGSAD 73 (327)
T ss_pred ----------------------------------------------------e-ecCCCceEEEEEecCCcceeeecccc
Confidence 1 27899999999999999999999 99
Q ss_pred CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec-----CCeEEEEEcCCCccccccccceecc
Q 010256 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-----KGSIRLIDMRQSALCDTHSKLFEEQ 328 (514)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-----dg~i~~wd~~~~~~~~~~~~~~~~~ 328 (514)
.++++||++++++.... ....+|..+.|+++| ++++.... .+.|.++|++.......
T Consensus 74 ~t~kLWDv~tGk~la~~---------k~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~-------- 135 (327)
T KOG0643|consen 74 QTAKLWDVETGKQLATW---------KTNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDID-------- 135 (327)
T ss_pred ceeEEEEcCCCcEEEEe---------ecCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhc--------
Confidence 99999999988876543 246789999999999 77766554 35799999985431100
Q ss_pred CCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEc
Q 010256 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (514)
...+...+..+.+.++.+-|+|-+++|++|.+ |.|.+||+++..+.+.....|... |..+.++
T Consensus 136 -s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~---------------Ind~q~s 199 (327)
T KOG0643|consen 136 -SEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSK---------------INDLQFS 199 (327)
T ss_pred -ccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccc---------------ccccccc
Confidence 00011123334478999999999999999965 999999999844556666666654 3389999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE-----eeCCCCCc------c
Q 010256 408 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR-----VKGADNSA------L 476 (514)
Q Consensus 408 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i-----~~~~~~~~------~ 476 (514)
+|..++++++.|.+-++||+.+.+.+ +++. -..|+++.+++|-...++.|+.--.--+ ..|.=..+ .
T Consensus 200 ~d~T~FiT~s~Dttakl~D~~tl~v~-Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~e 277 (327)
T KOG0643|consen 200 RDRTYFITGSKDTTAKLVDVRTLEVL-KTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFE 277 (327)
T ss_pred CCcceEEecccCccceeeeccceeeE-EEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHH
Confidence 99999999999999999999976333 3333 3468999999998887777764433333 11110000 0
Q ss_pred ccCCcccccccceEEEEEcCCCCEEEEEecCcEE
Q 010256 477 DANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 510 (514)
Q Consensus 477 ~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~ 510 (514)
+..+..-+|-++|+++||||||+..++|++++-+
T Consensus 278 EEigrvkGHFGPINsvAfhPdGksYsSGGEDG~V 311 (327)
T KOG0643|consen 278 EEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYV 311 (327)
T ss_pred HHhccccccccCcceeEECCCCcccccCCCCceE
Confidence 1122233588999999999999999999977643
No 90
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.5e-27 Score=206.70 Aligned_cols=272 Identities=13% Similarity=0.199 Sum_probs=209.4
Q ss_pred ceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCC
Q 010256 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 254 (514)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~ 254 (514)
+++|+|....- +.....-.+.+|+ .... ...+.+ ......+.+++|-.||++|++| ..|
T Consensus 31 sl~fsp~~P~d------------~aVt~S~rvqly~-~~~~------~~~k~~-srFk~~v~s~~fR~DG~LlaaGD~sG 90 (487)
T KOG0310|consen 31 SLCFSPKHPYD------------FAVTSSVRVQLYS-SVTR------SVRKTF-SRFKDVVYSVDFRSDGRLLAAGDESG 90 (487)
T ss_pred eEecCCCCCCc------------eEEecccEEEEEe-cchh------hhhhhH-HhhccceeEEEeecCCeEEEccCCcC
Confidence 78888866553 4444445667666 2221 122222 4556789999999999999999 899
Q ss_pred eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCcc
Q 010256 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (514)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 334 (514)
.|++||+.+ +...+ .+.+|+.++..+.|+|++...|++|+.|+.+++||+.+....
T Consensus 91 ~V~vfD~k~-r~iLR-------~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~---------------- 146 (487)
T KOG0310|consen 91 HVKVFDMKS-RVILR-------QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQ---------------- 146 (487)
T ss_pred cEEEecccc-HHHHH-------HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEE----------------
Confidence 999999653 33322 578899999999999998789999999999999999886531
Q ss_pred ceeeccccceeEEEEecCC-CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCE
Q 010256 335 SFFTEIIASISDIKFARNG-RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (514)
Q Consensus 335 ~~~~~~~~~i~~~~~s~~g-~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 412 (514)
..+.+|+..|.+.+|+|.. ..+++|+. |.|++||.+.....+.++. |..+ |.++.+-|.|..
T Consensus 147 ~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~p---------------Ve~vl~lpsgs~ 210 (487)
T KOG0310|consen 147 AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCP---------------VESVLALPSGSL 210 (487)
T ss_pred EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCc---------------eeeEEEcCCCCE
Confidence 1267788999999999964 47778875 9999999997444444543 3333 238999999999
Q ss_pred EEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEE
Q 010256 413 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHL 492 (514)
Q Consensus 413 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~ 492 (514)
|++++. +.|+|||+.+|.++......|...|+++.+..++.-|+++|.|+.|++++..+.. ..-...+.++|.++
T Consensus 211 iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K----vv~s~~~~~pvLsi 285 (487)
T KOG0310|consen 211 IASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK----VVHSWKYPGPVLSI 285 (487)
T ss_pred EEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceE----EEEeeecccceeeE
Confidence 998876 6899999998877776677799999999999999999999999999995432222 01123467999999
Q ss_pred EEcCCCCEEEEEecCcEEEE
Q 010256 493 AWHPSENSIACAASNSLYMY 512 (514)
Q Consensus 493 ~~spd~~~l~~~~~~~~~i~ 512 (514)
+.+||+..+++|-.|++...
T Consensus 286 avs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 286 AVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred EecCCCceEEEecccceeee
Confidence 99999999999998887653
No 91
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.6e-26 Score=187.66 Aligned_cols=277 Identities=18% Similarity=0.227 Sum_probs=206.4
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|+++.| +.+|.++++++.|.++++||..+++..+....
T Consensus 15 ~~i~sl~f--s~~G~~litss~dDsl~LYd~~~g~~~~ti~s-------------------------------------- 54 (311)
T KOG1446|consen 15 GKINSLDF--SDDGLLLITSSEDDSLRLYDSLSGKQVKTINS-------------------------------------- 54 (311)
T ss_pred CceeEEEe--cCCCCEEEEecCCCeEEEEEcCCCceeeEeec--------------------------------------
Confidence 67999999 67888999999999999999998876554332
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE-Ee--cCCeEEEEeccCCCceee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA--DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~--~d~~i~iwd~~~~~~~~~ 269 (514)
++..+..++|......++ +. .|.+|+..++.+.+...
T Consensus 55 ---------------------------------------kkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylR- 94 (311)
T KOG1446|consen 55 ---------------------------------------KKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLR- 94 (311)
T ss_pred ---------------------------------------ccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEE-
Confidence 223455666654444444 43 59999999999665443
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+.+|...|.+++.+|-+ ..+++++.|++|++||++..+.. -.+.. ..-..++|
T Consensus 95 -------YF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cq----g~l~~--------------~~~pi~Af 148 (311)
T KOG1446|consen 95 -------YFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQ----GLLNL--------------SGRPIAAF 148 (311)
T ss_pred -------EcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCc----eEEec--------------CCCcceeE
Confidence 689999999999999998 89999999999999999975542 11111 23345799
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCC-CCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
.|.|-++|++.. ..|++||++.- ..|..++........ +...+.|||||++|+.++..+.+++.|.
T Consensus 149 Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~------------ew~~l~FS~dGK~iLlsT~~s~~~~lDA 216 (311)
T KOG1446|consen 149 DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEA------------EWTDLEFSPDGKSILLSTNASFIYLLDA 216 (311)
T ss_pred CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCcc------------ceeeeEEcCCCCEEEEEeCCCcEEEEEc
Confidence 999999999876 59999999873 456666654422111 1238999999999999999999999999
Q ss_pred CCCceeeeeecCCCcce---eEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccc-cccceEEEEEcCCCCEEEE
Q 010256 428 SEGSAESTTLEASKNPM---RRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD-FSMKLLHLAWHPSENSIAC 503 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~ 503 (514)
-+|. ...++.++...- -...|+||++++++|+.||+|.+++...-. ......+ +...+.++.|+|.-.++++
T Consensus 217 f~G~-~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~---~v~~~~~~~~~~~~~~~fnP~~~mf~s 292 (311)
T KOG1446|consen 217 FDGT-VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK---KVAVLRGPNGGPVSCVRFNPRYAMFVS 292 (311)
T ss_pred cCCc-EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCc---EeeEecCCCCCCccccccCCceeeeee
Confidence 9885 456777665443 577899999999999999999993322111 1111112 5778899999999998888
Q ss_pred EecCcEEEE
Q 010256 504 AASNSLYMY 512 (514)
Q Consensus 504 ~~~~~~~i~ 512 (514)
++.. +.+|
T Consensus 293 a~s~-l~fw 300 (311)
T KOG1446|consen 293 ASSN-LVFW 300 (311)
T ss_pred cCce-EEEE
Confidence 7655 4554
No 92
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=4.2e-26 Score=216.03 Aligned_cols=241 Identities=13% Similarity=0.224 Sum_probs=170.8
Q ss_pred cccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCe
Q 010256 229 AHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
+.+|.+.|.+++|+|+ +.+|++| .|++|++||+.+.......+......+.+|...|.+++|+|++..+|++++.|+.
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt 149 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF 149 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCe
Confidence 3789999999999997 7899999 9999999999854321110000012457789999999999998556789999999
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeecccc
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL 385 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~ 385 (514)
|++||+++++.. ..+. |...|.+++|+|+|.+|++++ |+.|+|||+++ ++.+.++.+|.+.
T Consensus 150 IrIWDl~tg~~~----~~i~-------------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs-g~~i~tl~gH~g~ 211 (568)
T PTZ00420 150 VNIWDIENEKRA----FQIN-------------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK-QEIASSFHIHDGG 211 (568)
T ss_pred EEEEECCCCcEE----EEEe-------------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCC-CcEEEEEecccCC
Confidence 999999987642 1221 225799999999999999875 59999999997 8888888888764
Q ss_pred ccccccccccCCccceeeEEEcCCCCEEEEEeCCC----cEEEEecCCCceeeeee--cCCCcceeEEEECCCCCceeec
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN----LFRVFGCSEGSAESTTL--EASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
+.. ..++...|++++++|++++.|+ .|+|||+.........+ ..+...+......+++.++++|
T Consensus 212 ~~s----------~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG 281 (568)
T PTZ00420 212 KNT----------KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIG 281 (568)
T ss_pred cee----------EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEE
Confidence 310 0022345678999999888764 79999998643333333 3333444444446678999999
Q ss_pred CCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCC
Q 010256 460 SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 499 (514)
Q Consensus 460 s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~ 499 (514)
+.|++|++++-.... ......+.+...+..++|.|+..
T Consensus 282 kGD~tIr~~e~~~~~--~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 282 KGDGNCRYYQHSLGS--IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred ECCCeEEEEEccCCc--EEeecccccCCCccceEEccccc
Confidence 999999993321110 01111223567778899998754
No 93
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.5e-25 Score=200.93 Aligned_cols=249 Identities=15% Similarity=0.207 Sum_probs=188.3
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
.+.|.||||+.+.+.||.+-.+|.|.||++..+- -....+.+++ ...
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w----------------------~~~~vi~g~~-----------drs 71 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW----------------------FLEPVIHGPE-----------DRS 71 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCc----------------------eeeEEEecCC-----------CCc
Confidence 4789999999999999999999999999986432 2344566654 378
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
|.+++|+ ++..|++.+.+|.|.-||+.+++.+...... .+.++ +++..|.+..+
T Consensus 72 IE~L~W~---e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~--------gg~IW-------siai~p~~~~l-------- 125 (691)
T KOG2048|consen 72 IESLAWA---EGGRLFSSGLSGSITEWDLHTLKQKYNIDSN--------GGAIW-------SIAINPENTIL-------- 125 (691)
T ss_pred eeeEEEc---cCCeEEeecCCceEEEEecccCceeEEecCC--------Cccee-------EEEeCCccceE--------
Confidence 9999995 3558999999999999999999877766555 35666 77777777776
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeecc
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
+.|++||.+..++ . +.+. .+..+. +...+++|.+++|+|++..+++| .||.|++||...+.... ++..
T Consensus 126 ----~IgcddGvl~~~s-~-~p~~---I~~~r~-l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~-~~~~ 194 (691)
T KOG2048|consen 126 ----AIGCDDGVLYDFS-I-GPDK---ITYKRS-LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH-IITM 194 (691)
T ss_pred ----EeecCCceEEEEe-c-CCce---EEEEee-cccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE-Eeee
Confidence 9999999666554 1 1111 111122 24456899999999999999999 99999999999665544 4433
Q ss_pred CCCcccc-cCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC
Q 010256 274 KPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (514)
Q Consensus 274 ~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 352 (514)
+...+.. ...-|+++.|-.++ .|++|..-|.|.+||...+.+.+ . +.-|.+.|.+++..++
T Consensus 195 ~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiq----S------------~~~h~adVl~Lav~~~ 256 (691)
T KOG2048|consen 195 QLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQ----S------------HSCHDADVLALAVADN 256 (691)
T ss_pred cccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhh----h------------hhhhhcceeEEEEcCC
Confidence 3333333 45567899988775 89999999999999999988742 2 3445678999999999
Q ss_pred CCEEEEE-eCCeEEEEEccC
Q 010256 353 GRHILSR-DYMTLKLWDINM 371 (514)
Q Consensus 353 g~~l~~~-~~~~i~iwd~~~ 371 (514)
+..++++ -|+.|..|....
T Consensus 257 ~d~vfsaGvd~~ii~~~~~~ 276 (691)
T KOG2048|consen 257 EDRVFSAGVDPKIIQYSLTT 276 (691)
T ss_pred CCeEEEccCCCceEEEEecC
Confidence 7777774 568877777665
No 94
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.3e-26 Score=191.47 Aligned_cols=291 Identities=14% Similarity=0.180 Sum_probs=197.8
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcc--cCCcccccc-cccccccCCccceeeeeeccCC-------
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRD--NGGQRRDLE-MMDYSMSRHPEFRYKTEFQSHE------- 100 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~------- 100 (514)
..+|.+.|++++|+.||++|||.+.|+.|+||++.+-.. ..-.|+.++ .+...+.|.|+.+.....-...
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk 161 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYK 161 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEE
Confidence 468999999999999999999999999999999876432 112233333 2444566777654332110000
Q ss_pred ------Cc----ccccccc----ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcc
Q 010256 101 ------PE----FDYLKSL----EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGP 166 (514)
Q Consensus 101 ------~~----~~~~~~~----~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
.. +..+..+ .++-.|..+.. ..++.++++++.|..|.+|+++ |+.......+..
T Consensus 162 ~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--------- 229 (420)
T KOG2096|consen 162 LVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--------- 229 (420)
T ss_pred eeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeeccccc---------
Confidence 00 0000111 12233444444 5677899999999999999999 555444433321
Q ss_pred eecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCC
Q 010256 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 246 (514)
Q Consensus 167 v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 246 (514)
.....+.+|+|+.+ ++++....+++|.++...+.......+..-+.+|...|..++|+++.+
T Consensus 230 ------~n~~aavSP~GRFi------------a~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~ 291 (420)
T KOG2096|consen 230 ------SNYDAAVSPDGRFI------------AVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST 291 (420)
T ss_pred ------cccceeeCCCCcEE------------EEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc
Confidence 11156889999998 999999999999977666654443333334589999999999999999
Q ss_pred EEEEe-cCCeEEEEeccCCC---ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccc
Q 010256 247 TFISA-DDLRINLWNLEISN---QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (514)
Q Consensus 247 ~l~s~-~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 322 (514)
.+++. .||++++||++-.- +...++..-+..+....+....++++|.| ..|+ .+....+++|..++++....
T Consensus 292 r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA-~s~gs~l~~~~se~g~~~~~-- 367 (420)
T KOG2096|consen 292 RAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG-DSLA-VSFGSDLKVFASEDGKDYPE-- 367 (420)
T ss_pred eeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC-cEEE-eecCCceEEEEcccCccchh--
Confidence 99999 99999999986321 11111111111222334445589999999 6666 45567899999998775311
Q ss_pred cceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEE
Q 010256 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWD 368 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd 368 (514)
+ -..|...|.+++|+++|+++++++|..++++.
T Consensus 368 --~-----------e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 368 --L-----------EDIHSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred --H-----------HHhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence 1 23466899999999999999999998888875
No 95
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=8.3e-27 Score=201.92 Aligned_cols=270 Identities=15% Similarity=0.258 Sum_probs=195.3
Q ss_pred ccccccceEEEEEcCCC-CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 31 EVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g-~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
.+.|.+.|+.+..-|.. ..+|+++..+.|.|||.......... ..+.+....+.+|.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~-------------~~~~~Pdl~L~gH~--------- 177 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA-------------SGECRPDLRLKGHE--------- 177 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc-------------cccCCCceEEEeec---------
Confidence 46899999999999954 67888889999999998754432100 00233444578887
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..-..+.|++...| .|++++.|++|++||+...... ++
T Consensus 178 ---~eg~glsWn~~~~g-~Lls~~~d~~i~lwdi~~~~~~---------------------------------~~----- 215 (422)
T KOG0264|consen 178 ---KEGYGLSWNRQQEG-TLLSGSDDHTICLWDINAESKE---------------------------------DK----- 215 (422)
T ss_pred ---ccccccccccccce-eEeeccCCCcEEEEeccccccC---------------------------------Cc-----
Confidence 44677999876665 7999999999999999754310 00
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC-CEEEEe-cCCeEEEEeccCCCce
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
. ..+ +....+|...|..++|++.. .+|+++ +|+.+.|||+++....
T Consensus 216 ----------------~---------------~~p-~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~ 263 (422)
T KOG0264|consen 216 ----------------V---------------VDP-KTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK 263 (422)
T ss_pred ----------------c---------------ccc-eEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC
Confidence 0 001 11238999999999999964 455666 9999999999963111
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
. .....+|.+.+.+++|+|.+..+||+|+.|++|.+||+|+-..+ ..+ +.+|...|..|
T Consensus 264 ~------~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~---lh~------------~e~H~dev~~V 322 (422)
T KOG0264|consen 264 P------SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP---LHT------------FEGHEDEVFQV 322 (422)
T ss_pred C------cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC---cee------------ccCCCcceEEE
Confidence 1 12567899999999999988899999999999999999986542 333 55666899999
Q ss_pred EEecCCCEE-EE-EeCCeEEEEEccCCCCc----------eeeeeeccccccccccccccCCccceeeEEEcCCCCE-EE
Q 010256 348 KFARNGRHI-LS-RDYMTLKLWDINMDSGP----------VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VA 414 (514)
Q Consensus 348 ~~s~~g~~l-~~-~~~~~i~iwd~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~ 414 (514)
.|||....+ ++ |.|+.+.|||+..-++. ...+..|.+... .|..+.|+|+..+ |+
T Consensus 323 ~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~------------kV~DfsWnp~ePW~I~ 390 (422)
T KOG0264|consen 323 EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA------------KVSDFSWNPNEPWTIA 390 (422)
T ss_pred EeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc------------ccccccCCCCCCeEEE
Confidence 999976544 44 46799999999763322 222333433322 3448899998775 67
Q ss_pred EEeCCCcEEEEecCC
Q 010256 415 TGSYSNLFRVFGCSE 429 (514)
Q Consensus 415 s~~~dg~i~iwd~~~ 429 (514)
+.+.|+.+.||++..
T Consensus 391 SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 391 SVAEDNILQIWQMAE 405 (422)
T ss_pred EecCCceEEEeeccc
Confidence 889999999999873
No 96
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.9e-26 Score=220.43 Aligned_cols=252 Identities=15% Similarity=0.186 Sum_probs=187.8
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCC--Ccee---------eeeccCCCcccccCCceEEEEEecCCCcE
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS--NQSF---------NIVDVKPANMEDLTEVITSAEFHPTHCNM 297 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~--~~~~---------~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 297 (514)
..|.+.|+|+.|+|||++||+| +|+.|.+|..... .... +-+. ....+.+|...|..++|+|++ .+
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk-~~~~l~~H~~DV~Dv~Wsp~~-~~ 143 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWK-VVSILRGHDSDVLDVNWSPDD-SL 143 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceee-EEEEEecCCCccceeccCCCc-cE
Confidence 6799999999999999999999 9999999998730 0000 0000 002577899999999999998 89
Q ss_pred EEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCce
Q 010256 298 LAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPV 376 (514)
Q Consensus 298 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~ 376 (514)
|++++.|++|.+||.++.+. ++. +.+|.+.|..+.|.|-|+||++- +|++|+||++.. -...
T Consensus 144 lvS~s~DnsViiwn~~tF~~----~~v------------l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i~ 206 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFEL----LKV------------LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGIE 206 (942)
T ss_pred EEEecccceEEEEcccccee----eee------------eecccccccceEECCccCeeeeecCCceEEEEEccc-ceee
Confidence 99999999999999998754 333 55666899999999999999995 559999999765 5555
Q ss_pred eeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe----CCCcEEEEecCCCceeeeeecCCCcceeEEEECCC
Q 010256 377 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS----YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 452 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (514)
+.+..+-.....- .-...+.|||||.+|++.. .-..+.|.+..+- .....+-||..++..+.|+|.
T Consensus 207 k~It~pf~~~~~~---------T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tW-k~~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 207 KSITKPFEESPLT---------TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTW-KVDKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred EeeccchhhCCCc---------ceeeecccCCCcCeecchhhccCCcceeEEEecCCc-eeeeeeecCCCceEEEEeChH
Confidence 5555443321100 0123789999999999763 2246788877543 334788999999999999872
Q ss_pred -----CC------------ceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEE
Q 010256 453 -----RP------------SRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMY 512 (514)
Q Consensus 453 -----~~------------~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~ 512 (514)
.+ .+|+||.|+++-+.....+. .+.....=+...|.+++|+|||-.|.+++ ++.+.++
T Consensus 277 lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R--Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 277 LFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR--PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred HhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC--chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 11 68999999999996555444 23332233678999999999998887777 5555554
No 97
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=8.4e-26 Score=184.69 Aligned_cols=314 Identities=16% Similarity=0.249 Sum_probs=220.1
Q ss_pred ccccccceEEEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 31 EVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
...|.+.|+++.+.+ .|+|+++|+.||.|.+||++........ .+-.+..++ .-...-.+|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s--~li~k~~c~------v~~~h~~~Hk--------- 101 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS--GLIAKHKCI------VAKQHENGHK--------- 101 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc--cceeheeee------ccccCCccce---------
Confidence 457999999999998 7899999999999999999765421000 000000000 0000123344
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
-.|..+.|-|-..| ++.+++-|.++++||..+-+....+.++
T Consensus 102 ---y~iss~~WyP~DtG-mFtssSFDhtlKVWDtnTlQ~a~~F~me---------------------------------- 143 (397)
T KOG4283|consen 102 ---YAISSAIWYPIDTG-MFTSSSFDHTLKVWDTNTLQEAVDFKME---------------------------------- 143 (397)
T ss_pred ---eeeeeeEEeeecCc-eeecccccceEEEeecccceeeEEeecC----------------------------------
Confidence 67999999987665 8889999999999999987654443333
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC---CCEEEEe-cCCeEEEEeccCCC
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---GETFISA-DDLRINLWNLEISN 265 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~-~d~~i~iwd~~~~~ 265 (514)
+.|++-+++|- ..++|+| .+-.|++-|+..+.
T Consensus 144 --------------------------------------------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 144 --------------------------------------------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS 179 (397)
T ss_pred --------------------------------------------ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence 22344445542 4467778 89999999999665
Q ss_pred ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCC--Cccceeeccccc
Q 010256 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP--GTRSFFTEIIAS 343 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 343 (514)
.. +++.+|.+.|.++.|+|...-.|++|+.||.|++||++...-+ ...++.++.. .....-..|.+.
T Consensus 180 ~s--------H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc---f~~lD~hn~k~~p~~~~n~ah~gk 248 (397)
T KOG4283|consen 180 FS--------HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC---FRVLDQHNTKRPPILKTNTAHYGK 248 (397)
T ss_pred ce--------eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccce---eEEeecccCccCccccccccccce
Confidence 43 2689999999999999998778999999999999999976444 5566665421 112234678999
Q ss_pred eeEEEEecCCCEEEE-EeCCeEEEEEccCCCCceeeeeeccccccccccccccCCc-cceeeEEEcCCCCEEEEEeCCCc
Q 010256 344 ISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSI-FDKFECCLSGDGGRVATGSYSNL 421 (514)
Q Consensus 344 i~~~~~s~~g~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~ 421 (514)
+..++|+.++.++++ |.|..+++|+.......+..+- ... ++..+ +.+ -+. +.+...++.--.++.
T Consensus 249 vngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g-~~~---------~n~~~~~~~-~~~-~~~s~vfv~~p~~~~ 316 (397)
T KOG4283|consen 249 VNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFG-PII---------HNQTTSFAV-HIQ-SMDSDVFVLFPNDGS 316 (397)
T ss_pred eeeeeecccchhhhhccCccceEEeecccCcccccccc-ccc---------ccccccceE-EEe-ecccceEEEEecCCe
Confidence 999999999999998 5679999999987322222221 100 00110 001 122 333444444456688
Q ss_pred EEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 422 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+.++++-++.. +..+..|...+.+.++.|+-+.+.+|+.|+.+..
T Consensus 317 lall~~~sgs~-ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~ 361 (397)
T KOG4283|consen 317 LALLNLLEGSF-VRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYM 361 (397)
T ss_pred EEEEEccCceE-EEeeecccceeeEEeecCchhhhhccccCCcccc
Confidence 99999988754 4788889888999999999999999999999887
No 98
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.9e-27 Score=211.73 Aligned_cols=296 Identities=19% Similarity=0.292 Sum_probs=221.6
Q ss_pred cccccceE---EEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 32 VQEVDIIS---AIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 32 ~~h~~~V~---~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
.+|...|. ++..+. .++||+||+.||.|++|++...... |+-.+...++.|.
T Consensus 18 ~qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~-----------------~s~~~~asme~Hs------- 73 (735)
T KOG0308|consen 18 KQNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNE-----------------PSTPYIASMEHHS------- 73 (735)
T ss_pred hhccccccchhhccccCCCCceEEecCCCceEEEeccccccCC-----------------cccchhhhhhhhH-------
Confidence 46777777 666664 6778999999999999998644321 2333567788888
Q ss_pred ccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
+.|+.+..+ .+++.|++++.|-+|++|+...+..
T Consensus 74 -----DWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~~--------------------------------------- 107 (735)
T KOG0308|consen 74 -----DWVNDIILC--GNGKTLISASSDTTVKVWNAHKDNT--------------------------------------- 107 (735)
T ss_pred -----hHHhhHHhh--cCCCceEEecCCceEEEeecccCcc---------------------------------------
Confidence 899999985 5667899999999999999865420
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEE-CCCCCEEEEe-cCCeEEEEeccCCC
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISN-NSDGETFISA-DDLRINLWNLEISN 265 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~-~d~~i~iwd~~~~~ 265 (514)
-|..+ +..|++.|.|++. .++...+|+| -|+.|.+||++++-
T Consensus 108 -----------------------------------~c~st-ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~ 151 (735)
T KOG0308|consen 108 -----------------------------------FCMST-IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGT 151 (735)
T ss_pred -----------------------------------hhHhh-hhcccchheeeeecccCceeEEecCCCccEEEEEccCcc
Confidence 01111 3679999999999 7888899998 89999999999663
Q ss_pred c--eeeeeccCCCccc-ccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccc
Q 010256 266 Q--SFNIVDVKPANME-DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 266 ~--~~~~~~~~~~~~~-~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
. ....-......+. ++...|++++.++.| ..|++|+..+.+++||.++.+... .+.||+.
T Consensus 152 ~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kim----------------kLrGHTd 214 (735)
T KOG0308|consen 152 ATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIM----------------KLRGHTD 214 (735)
T ss_pred hhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEecccccccee----------------eeecccc
Confidence 2 1111111112334 788999999999999 899999999999999999987642 2567889
Q ss_pred ceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCc
Q 010256 343 SISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 421 (514)
.|..+..++||..++++ +||+|++||+.. .+++.++..|... |+++..+|+=..+.+|+.||.
T Consensus 215 NVr~ll~~dDGt~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~---------------VWaL~~~~sf~~vYsG~rd~~ 278 (735)
T KOG0308|consen 215 NVRVLLVNDDGTRLLSASSDGTIRLWDLGQ-QRCLATYIVHKEG---------------VWALQSSPSFTHVYSGGRDGN 278 (735)
T ss_pred ceEEEEEcCCCCeEeecCCCceEEeeeccc-cceeeeEEeccCc---------------eEEEeeCCCcceEEecCCCCc
Confidence 99999999999999986 569999999997 8999999999865 568888899899999999999
Q ss_pred EEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 422 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|+.=|+.+..... .+-....+|..+..+....-+=+++.|+.|+-
T Consensus 279 i~~Tdl~n~~~~t-lick~daPv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 279 IYRTDLRNPAKST-LICKEDAPVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred EEecccCCchhhe-EeecCCCchhhhhhccccCCceeeecccccee
Confidence 9999998753322 22222334444444432222234445665555
No 99
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.8e-26 Score=189.96 Aligned_cols=303 Identities=13% Similarity=0.158 Sum_probs=209.4
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..+.+-+| ++||.++++|+.|-.|+|.|++.--.+. ... ..
T Consensus 113 ~~cR~aaf--s~DG~lvATGsaD~SIKildvermlaks--~~~----------------------em------------- 153 (430)
T KOG0640|consen 113 SPCRAAAF--SPDGSLVATGSADASIKILDVERMLAKS--KPK----------------------EM------------- 153 (430)
T ss_pred cceeeeee--CCCCcEEEccCCcceEEEeehhhhhhhc--chh----------------------hh-------------
Confidence 88999999 7899999999999999999987321000 000 00
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
..+... ......++ +..|..+|+++.|+|....|++| .|++|++||+.........
T Consensus 154 ------~~~~~q---------------a~hPvIRT-lYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~- 210 (430)
T KOG0640|consen 154 ------ISGDTQ---------------ARHPVIRT-LYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAF- 210 (430)
T ss_pred ------ccCCcc---------------cCCceEee-hhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHH-
Confidence 000000 00011122 37899999999999999999999 9999999999743211110
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
..-....+|.++.|+|.| .+|+.|..-..+++||+.+.++... .. .-.+|++.|+++.+++
T Consensus 211 -----K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qcfvs-------an------Pd~qht~ai~~V~Ys~ 271 (430)
T KOG0640|consen 211 -----KVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVS-------AN------PDDQHTGAITQVRYSS 271 (430)
T ss_pred -----HHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeee-------cC------cccccccceeEEEecC
Confidence 112235789999999999 8999999999999999998765311 10 1356889999999999
Q ss_pred CCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 352 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 352 ~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
.|++.++++. |.|++||--. ++++.++....+. . .|.+..|+.+|+||.+.+.|..+++|.+.++
T Consensus 272 t~~lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~g-s------------evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 272 TGSLYVTASKDGAIKLWDGVS-NRCVRTIGNAHGG-S------------EVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred CccEEEEeccCCcEEeecccc-HHHHHHHHhhcCC-c------------eeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 9999999875 9999999876 7888777533221 1 1448899999999999999999999999998
Q ss_pred ceeeeeecCC-----CcceeEEEECCCCCceeecCCCCeEEEeeCCCCCc-cccCCcccccccceEEEEEcCCCCEEEEE
Q 010256 431 SAESTTLEAS-----KNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSA-LDANGNAFDFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 431 ~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~spd~~~l~~~ 504 (514)
..+ ..+.+. ...-+...|+....|++.-.+...--. .|.-.. +....-.++|.+.++.+.-||.+..+.++
T Consensus 338 R~l-~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slc--sWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTc 414 (430)
T KOG0640|consen 338 RML-KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLC--SWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTC 414 (430)
T ss_pred ceE-EEEecCCcccchhhhhhhhhcCccceEEccccccCcee--eccccchhhhhhcccCCCCCceEEEeCCCCCceeee
Confidence 655 344332 122234455555555544432211111 111111 11222345799999999999999988877
Q ss_pred e-cCcEEEEe
Q 010256 505 A-SNSLYMYY 513 (514)
Q Consensus 505 ~-~~~~~i~~ 513 (514)
+ +-...+|+
T Consensus 415 sdD~raRFWy 424 (430)
T KOG0640|consen 415 SDDFRARFWY 424 (430)
T ss_pred cccceeeeee
Confidence 7 55777886
No 100
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=3.7e-27 Score=195.13 Aligned_cols=283 Identities=17% Similarity=0.233 Sum_probs=219.4
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..+.|..| +|||++|++++.||.|.+||..+|++..-+.+.. +.+
T Consensus 214 Sh~EcA~F--SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA-------------------------qd~-------- 258 (508)
T KOG0275|consen 214 SHVECARF--SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA-------------------------QDN-------- 258 (508)
T ss_pred cchhheee--CCCCceEeeccccceeeeehhccchhhhhhhhhh-------------------------hcc--------
Confidence 56888899 6789999999999999999999998765444331 111
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+--+...|.|++|+.|.+.+++| .||.|++|.++++....++
T Consensus 259 ------------------------------------fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrF- 301 (508)
T KOG0275|consen 259 ------------------------------------FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRF- 301 (508)
T ss_pred ------------------------------------eeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHh-
Confidence 12355789999999999999999 9999999999987655421
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
-..|...|+++.|+.|+ ..+++++.|.++++.-+.+|++. +. +.+|.+.|+...|++
T Consensus 302 ------drAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~L----KE------------frGHsSyvn~a~ft~ 358 (508)
T KOG0275|consen 302 ------DRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCL----KE------------FRGHSSYVNEATFTD 358 (508)
T ss_pred ------hhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhH----HH------------hcCccccccceEEcC
Confidence 23689999999999999 88999999999999999999873 22 667779999999999
Q ss_pred CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC-CCCEEEEEeCCCcEEEEecCC
Q 010256 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~ 429 (514)
+|..+++++ ||+|++|+.++ ..++.+++...... .|.++-.-| +...++.+...++|+|.++..
T Consensus 359 dG~~iisaSsDgtvkvW~~Kt-teC~~Tfk~~~~d~-------------~vnsv~~~PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 359 DGHHIISASSDGTVKVWHGKT-TECLSTFKPLGTDY-------------PVNSVILLPKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred CCCeEEEecCCccEEEecCcc-hhhhhhccCCCCcc-------------cceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence 999999975 69999999998 88888886544221 133554444 556788888999999999872
Q ss_pred Cceeeeeec-CC--CcceeEEEECCCCCceeecCCCCeEEE---eeCCCCCccccCCcccccccceEEEEEcCCCCEEEE
Q 010256 430 GSAESTTLE-AS--KNPMRRQVQTPSRPSRPLGSLSGVVRR---VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC 503 (514)
Q Consensus 430 ~~~~~~~~~-~~--~~~v~~~~~~~~~~~l~s~s~d~~v~i---~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~ 503 (514)
+....+. +. .+..-+.+.+|.|.++.+.++|+.++. ..|.... .+. -|...|..++-+|-.++||+
T Consensus 425 --QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~--tl~----VhEkdvIGl~HHPHqNllAs 496 (508)
T KOG0275|consen 425 --QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLER--TLP----VHEKDVIGLTHHPHQNLLAS 496 (508)
T ss_pred --eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceee--eee----cccccccccccCcccchhhh
Confidence 3434443 22 234557788999999999999999887 3333222 233 37899999999999999998
Q ss_pred EecCcE-EEE
Q 010256 504 AASNSL-YMY 512 (514)
Q Consensus 504 ~~~~~~-~i~ 512 (514)
-+++++ .+|
T Consensus 497 YsEDgllKLW 506 (508)
T KOG0275|consen 497 YSEDGLLKLW 506 (508)
T ss_pred hcccchhhhc
Confidence 886654 444
No 101
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=3.2e-25 Score=205.64 Aligned_cols=380 Identities=10% Similarity=0.144 Sum_probs=278.6
Q ss_pred eEEEEEcCC--CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 38 ISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 38 V~~~~~s~~--g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
|+++. +|. =+.++.|+.+|.+.|||+.+++ .+.+++++. ..|
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K-----------------------~v~~f~~~~------------s~I 205 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGK-----------------------VVYTFQEFF------------SRI 205 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCc-----------------------EEEEecccc------------cce
Confidence 77765 553 3568899999999999999888 457888887 889
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
+++.=+|--| .++.|..+|+|.+++++.++....++.. .+.|. .++|..||+.+
T Consensus 206 T~ieqsPaLD--VVaiG~~~G~ViifNlK~dkil~sFk~d--------~g~Vt-------slSFrtDG~p~--------- 259 (910)
T KOG1539|consen 206 TAIEQSPALD--VVAIGLENGTVIIFNLKFDKILMSFKQD--------WGRVT-------SLSFRTDGNPL--------- 259 (910)
T ss_pred eEeccCCcce--EEEEeccCceEEEEEcccCcEEEEEEcc--------cccee-------EEEeccCCCee---------
Confidence 9999866555 8999999999999999999987776654 34555 88999999876
Q ss_pred CcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccC
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~ 274 (514)
.++++..|.+.+|| +..... .......|.+.|....|.|....++++ .|..+++|-.+++....+++
T Consensus 260 --las~~~~G~m~~wD-Le~kkl------~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~L--- 327 (910)
T KOG1539|consen 260 --LASGRSNGDMAFWD-LEKKKL------INVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLL--- 327 (910)
T ss_pred --EEeccCCceEEEEE-cCCCee------eeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhe---
Confidence 37778889999999 433221 222235788999999999999999998 89999999776555433322
Q ss_pred CCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccc----------------------------------
Q 010256 275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---------------------------------- 320 (514)
Q Consensus 275 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~---------------------------------- 320 (514)
+...+|..+..++.|.-.....+.+++.|++++.+++.....-.+
T Consensus 328 -R~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~ 406 (910)
T KOG1539|consen 328 -RSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENA 406 (910)
T ss_pred -eeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccc
Confidence 234689999999999844448999999999998887653211000
Q ss_pred ----------------cccceeccCCCCccce-----eeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceee
Q 010256 321 ----------------HSKLFEEQEAPGTRSF-----FTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVAT 378 (514)
Q Consensus 321 ----------------~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~ 378 (514)
..++|.-.+...-+.+ ++.....+++++.++.|.+.+.|.. |.|.+|++++ +....+
T Consensus 407 RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS-Gi~r~s 485 (910)
T KOG1539|consen 407 REKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS-GIHRKS 485 (910)
T ss_pred hhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc-Ceeecc
Confidence 0011110000000000 1112257899999999999999866 9999999997 666666
Q ss_pred e---eeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCc
Q 010256 379 F---QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS 455 (514)
Q Consensus 379 ~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 455 (514)
+ ..|... |+.++...-++.+++++.+|.+++||..... +...+. -..++..+..+.....
T Consensus 486 f~~~~ah~~~---------------V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~-l~~~~~~iv~hr~s~l 548 (910)
T KOG1539|consen 486 FGDSPAHKGE---------------VTGLAVDGTNRLLVSAGADGILKFWDFKKKV-LKKSLR-LGSSITGIVYHRVSDL 548 (910)
T ss_pred cccCccccCc---------------eeEEEecCCCceEEEccCcceEEEEecCCcc-eeeeec-cCCCcceeeeeehhhh
Confidence 6 344443 4488888888999999999999999998653 323332 2345667777878888
Q ss_pred eeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 456 RPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 456 l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
++.+..|-.|++++-.... +.....+|...|++++|||||++|++++ +..+++|.
T Consensus 549 ~a~~~ddf~I~vvD~~t~k---vvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 549 LAIALDDFSIRVVDVVTRK---VVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred hhhhcCceeEEEEEchhhh---hhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 9999999999995443211 2234446999999999999999999998 68888986
No 102
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=4.8e-26 Score=214.93 Aligned_cols=278 Identities=13% Similarity=0.175 Sum_probs=216.1
Q ss_pred cccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
|...+.+..|. +.++++++.+++|.+|+..++.. ....+.||. +
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~----------------------i~~~l~GH~------------g 250 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL----------------------ILTRLVGHF------------G 250 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceE----------------------EEeeccCCC------------C
Confidence 57789999998 56899999999999999887664 334489999 9
Q ss_pred ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
.|.++++. .-+.++++|+.|.++++||..++++...+..+.. .+. ...-....+
T Consensus 251 ~V~~l~~~--~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~s--------tv~---------~~~~~~~~~------- 304 (537)
T KOG0274|consen 251 GVWGLAFP--SGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTS--------SVR---------CLTIDPFLL------- 304 (537)
T ss_pred CceeEEEe--cCCCEEEEEecCCcEEeEecCCCcEEEEecCCCc--------eEE---------EEEccCceE-------
Confidence 99999994 2456999999999999999999999988886632 222 222233333
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeec
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 272 (514)
++|+.|.+|++|+ +. ...+...+ .+|.++|+++..+ +.++++| .|++|++||+.+.+...
T Consensus 305 -----~sgs~D~tVkVW~-v~------n~~~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~---- 365 (537)
T KOG0274|consen 305 -----VSGSRDNTVKVWD-VT------NGACLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLK---- 365 (537)
T ss_pred -----eeccCCceEEEEe-cc------CcceEEEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeee----
Confidence 7789999999999 33 23344443 6699999999998 7889998 99999999999665443
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCC-ccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS-ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
++.+|...|+++.+.+. ..+++|+.|+.|++||+++. ++ +.+ +.+|.+-+..+.+
T Consensus 366 ----sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c----~~t------------l~~h~~~v~~l~~-- 421 (537)
T KOG0274|consen 366 ----SLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKC----IHT------------LQGHTSLVSSLLL-- 421 (537)
T ss_pred ----eecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhh----hhh------------hcCCccccccccc--
Confidence 67889999999988774 58999999999999999998 44 344 4445566655554
Q ss_pred CCCEEEEEe-CCeEEEEEccCCCCceeeeeec-cccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVH-EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
.+++|++++ |++|++||... ++++.++.++ ... |+.+++. ...+++++.||.+++||+.+
T Consensus 422 ~~~~Lvs~~aD~~Ik~WD~~~-~~~~~~~~~~~~~~---------------v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 422 RDNFLVSSSADGTIKLWDAEE-GECLRTLEGRHVGG---------------VSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred ccceeEeccccccEEEeeccc-CceeeeeccCCccc---------------EEEeecC--cceEEEEecCCeeEEEeccc
Confidence 477888875 59999999997 8999998874 222 2245543 46788899999999999998
Q ss_pred Cceee
Q 010256 430 GSAES 434 (514)
Q Consensus 430 ~~~~~ 434 (514)
+....
T Consensus 484 ~~~~~ 488 (537)
T KOG0274|consen 484 GTLIR 488 (537)
T ss_pred Cchhh
Confidence 85543
No 103
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3.9e-25 Score=208.74 Aligned_cols=207 Identities=14% Similarity=0.201 Sum_probs=160.5
Q ss_pred cccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCe
Q 010256 229 AHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
+.+|.+.|.+++|+| ++++|++| .|++|++||+.+....... ......+.+|...|.+++|+|++.++|++++.|+.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~-~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI-SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc-CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 378999999999999 78899999 9999999999754321000 00012567899999999999986579999999999
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeecccc
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL 385 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~ 385 (514)
|+|||+++++.. .. +.+|...|.+++|+|+|.+|++++ |++|+|||+++ ++.+..+..|...
T Consensus 150 VrIWDl~tg~~~----~~------------l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs-g~~v~tl~~H~~~ 212 (493)
T PTZ00421 150 VNVWDVERGKAV----EV------------IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD-GTIVSSVEAHASA 212 (493)
T ss_pred EEEEECCCCeEE----EE------------EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC-CcEEEEEecCCCC
Confidence 999999887642 22 445667899999999999999976 59999999997 7888888877653
Q ss_pred ccccccccccCCccceeeEEEcCCCCEEEEEe----CCCcEEEEecCCCceeeeeecCCC-cceeEEEECCCCCceeecC
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGDGGRVATGS----YSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTPSRPSRPLGS 460 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~s 460 (514)
. ...+.|.+++..|++++ .|+.|++||+.+..........+. ..+....|++++++|++++
T Consensus 213 ~--------------~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 213 K--------------SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred c--------------ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEE
Confidence 2 11577889888877654 478999999987654444444333 4455667899999998887
Q ss_pred -CCCeEEE
Q 010256 461 -LSGVVRR 467 (514)
Q Consensus 461 -~d~~v~i 467 (514)
.|+.|++
T Consensus 279 kgDg~Iri 286 (493)
T PTZ00421 279 KGEGNIRC 286 (493)
T ss_pred eCCCeEEE
Confidence 5999999
No 104
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=1e-26 Score=185.62 Aligned_cols=235 Identities=13% Similarity=0.195 Sum_probs=187.6
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
.+|++.|++.+.+.+-..-+++ .|-+.++||.-++..+.. -.|..-|.+++|+.|. +.|++|+.+..+|
T Consensus 56 eghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhs---------f~hkhivk~~af~~ds-~~lltgg~ekllr 125 (334)
T KOG0278|consen 56 EGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHS---------FEHKHIVKAVAFSQDS-NYLLTGGQEKLLR 125 (334)
T ss_pred eccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhh---------hhhhheeeeEEecccc-hhhhccchHHHhh
Confidence 7899999999999888888888 899999999988876532 2488899999999998 8999999999999
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP 387 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (514)
+||++..+.. ...+.+|.+.|..+.|....+.++++.+ ++||+||.++ +..++++......
T Consensus 126 vfdln~p~Ap---------------p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT-gt~v~sL~~~s~V-- 187 (334)
T KOG0278|consen 126 VFDLNRPKAP---------------PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT-GTEVQSLEFNSPV-- 187 (334)
T ss_pred hhhccCCCCC---------------chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc-CcEEEEEecCCCC--
Confidence 9999765432 2236778899999999998888888654 9999999998 8888888766543
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.++.++++|++|.++ ..+.|.+||..+...+ +..+ -...|.+...+|+..++++|++|..++.
T Consensus 188 --------------tSlEvs~dG~ilTia-~gssV~Fwdaksf~~l-Ks~k-~P~nV~SASL~P~k~~fVaGged~~~~k 250 (334)
T KOG0278|consen 188 --------------TSLEVSQDGRILTIA-YGSSVKFWDAKSFGLL-KSYK-MPCNVESASLHPKKEFFVAGGEDFKVYK 250 (334)
T ss_pred --------------cceeeccCCCEEEEe-cCceeEEeccccccce-eecc-CccccccccccCCCceEEecCcceEEEE
Confidence 389999999987654 5578999999876433 2222 2234677888999999999999999998
Q ss_pred --eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 468 --VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 468 --~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
+...... ....-+|-+.|.++.|+|||..-|+|+ ++.++||+
T Consensus 251 fDy~TgeEi----~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 251 FDYNTGEEI----GSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred EeccCCcee----eecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 2222222 111236889999999999999999999 66788887
No 105
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.3e-26 Score=184.33 Aligned_cols=261 Identities=17% Similarity=0.228 Sum_probs=199.3
Q ss_pred cccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
.+.+|.+.|..+...-.|++|||++.|++|+|+.+..... .+.+.++.||.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--------------------s~ll~~L~Gh~--------- 56 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--------------------SKLLAELTGHS--------- 56 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--------------------ceeeeEecCCC---------
Confidence 4568999999999999999999999999999999876542 24778999999
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
++|..++|....-|.+|++++.||.|.||.-++++..+..
T Consensus 57 ---GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~------------------------------------- 96 (299)
T KOG1332|consen 57 ---GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAY------------------------------------- 96 (299)
T ss_pred ---CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhh-------------------------------------
Confidence 9999999976557889999999999999998877421110
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCCCc
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQ 266 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~ 266 (514)
. ...|...|++++|.|. |-.|+++ .||.|.+.+.+....
T Consensus 97 -------------------------------------e-~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~ 138 (299)
T KOG1332|consen 97 -------------------------------------E-HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG 138 (299)
T ss_pred -------------------------------------h-hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC
Confidence 0 2578899999999987 6678888 999999999886522
Q ss_pred eeeeeccCCCcccccCCceEEEEEecC---C----------CcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCc
Q 010256 267 SFNIVDVKPANMEDLTEVITSAEFHPT---H----------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (514)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~i~~v~~~p~---~----------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 333 (514)
-.. +.....|.-.|++++|.|. | .+.|++|+.|..|+||+..++.-..
T Consensus 139 w~t-----~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~-------------- 199 (299)
T KOG1332|consen 139 WTT-----SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL-------------- 199 (299)
T ss_pred ccc-----hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhh--------------
Confidence 110 1134668899999999986 2 1469999999999999998863211
Q ss_pred cceeeccccceeEEEEecCC----CEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC
Q 010256 334 RSFFTEIIASISDIKFARNG----RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (514)
Q Consensus 334 ~~~~~~~~~~i~~~~~s~~g----~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (514)
..++.+|.+.|+.++|.|.- .+|++++ ||++.||..+.+..+-..-..+... + .++.+.||.
T Consensus 200 e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~----------~---~~w~vSWS~ 266 (299)
T KOG1332|consen 200 ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFP----------D---VVWRVSWSL 266 (299)
T ss_pred hhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCC----------c---ceEEEEEec
Confidence 12367788999999999953 4778876 4999999887432221111111111 1 145899999
Q ss_pred CCCEEEEEeCCCcEEEEecCC
Q 010256 409 DGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 409 ~~~~l~s~~~dg~i~iwd~~~ 429 (514)
.|+.|+.++.|+.|.+|.-..
T Consensus 267 sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 267 SGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cccEEEEecCCcEEEEEEeCC
Confidence 999999999999999997553
No 106
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.5e-26 Score=184.01 Aligned_cols=250 Identities=16% Similarity=0.202 Sum_probs=191.0
Q ss_pred cccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEe-cCCCcEEEEEecCCe
Q 010256 229 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSSKGS 306 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~-p~~~~~l~~~~~dg~ 306 (514)
...|.+.|.++..+--|+.|+++ +|++|+|+..+...+...+ .++.+|.++|..++|. |.-+.+||+++.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll-----~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLL-----AELTGHSGPVWKVAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceee-----eEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence 46899999999998899999999 9999999999977653322 3789999999999995 433389999999999
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC--CCEEEEE-eCCeEEEEEccCCCC--ceeeeee
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSR-DYMTLKLWDINMDSG--PVATFQV 381 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~~-~~~~i~iwd~~~~~~--~~~~~~~ 381 (514)
|.||.-.+++-. .. ..+..|...|++++|.|. |-.|+++ +||.|.|.+.+..+. .......
T Consensus 82 VIiWke~~g~w~--k~------------~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a 147 (299)
T KOG1332|consen 82 VIIWKEENGRWT--KA------------YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA 147 (299)
T ss_pred EEEEecCCCchh--hh------------hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence 999998877421 11 124567789999999995 5566665 569999999987422 2233344
Q ss_pred ccccccccccccccCCccceeeEEEcCC---C-----------CEEEEEeCCCcEEEEecCCCceee-eeecCCCcceeE
Q 010256 382 HEHLRPKLCDLYENDSIFDKFECCLSGD---G-----------GRVATGSYSNLFRVFGCSEGSAES-TTLEASKNPMRR 446 (514)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~-----------~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~ 446 (514)
|... |.+++|.|- | +.|++|+.|+.|+||+..++.... .+|++|.+.|+.
T Consensus 148 H~~G---------------vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRD 212 (299)
T KOG1332|consen 148 HEIG---------------VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRD 212 (299)
T ss_pred cccc---------------cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhh
Confidence 5433 348888885 4 569999999999999999875544 669999999999
Q ss_pred EEECCCC----CceeecCCCCeEEEeeCCCCCccccCCcc-cccccceEEEEEcCCCCEEEEE-ecCcEEEEe
Q 010256 447 QVQTPSR----PSRPLGSLSGVVRRVKGADNSALDANGNA-FDFSMKLLHLAWHPSENSIACA-ASNSLYMYY 513 (514)
Q Consensus 447 ~~~~~~~----~~l~s~s~d~~v~i~~~~~~~~~~~~~~~-~~~~~~v~~~~~spd~~~l~~~-~~~~~~i~~ 513 (514)
+++.|.- .+||++|.||+|.|....... .+-..+. .++...+.++.||+.|+.|+++ +++.+.+|-
T Consensus 213 VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~-e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 213 VAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY-EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred hhhccccCCCceeeEEecCCCcEEEEEecCcc-CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 9999864 479999999999993222111 1122222 2467889999999999999955 488888873
No 107
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.6e-27 Score=197.37 Aligned_cols=284 Identities=13% Similarity=0.187 Sum_probs=210.1
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
++..+.||. +.|.+++=+|..- ..+++|+.||.|++||+.+.++.
T Consensus 58 Fv~~L~gHr------------dGV~~lakhp~~l-s~~aSGs~DG~VkiWnlsqR~~~---------------------- 102 (433)
T KOG0268|consen 58 FVGSLDGHR------------DGVSCLAKHPNKL-STVASGSCDGEVKIWNLSQRECI---------------------- 102 (433)
T ss_pred chhhccccc------------cccchhhcCcchh-hhhhccccCceEEEEehhhhhhh----------------------
Confidence 445577887 8999999866432 46889999999999998765421
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 251 (514)
+. +..|.+.|..|++.. +..+.+|
T Consensus 103 ------------------------------------------------------~~-f~AH~G~V~Gi~v~~-~~~~tvg 126 (433)
T KOG0268|consen 103 ------------------------------------------------------RT-FKAHEGLVRGICVTQ-TSFFTVG 126 (433)
T ss_pred ------------------------------------------------------he-eecccCceeeEEecc-cceEEec
Confidence 11 367889999999987 4444445
Q ss_pred cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCC
Q 010256 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (514)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 331 (514)
+|.+|+.|.++. . ..+. + .....+..+.-+..+ +.+++++. .|.|||.+-... +..+.-
T Consensus 127 dDKtvK~wk~~~-~-p~~t-------i-lg~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~P----v~smsw---- 185 (433)
T KOG0268|consen 127 DDKTVKQWKIDG-P-PLHT-------I-LGKSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNP----VSSMSW---- 185 (433)
T ss_pred CCcceeeeeccC-C-ccee-------e-ecccccccccccccc-ccccccCc--eeeecccccCCc----cceeec----
Confidence 999999999873 2 2221 1 134566777777666 78888875 688999865443 233322
Q ss_pred CccceeeccccceeEEEEecCCCEEE-EE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 332 GTRSFFTEIIASISDIKFARNGRHIL-SR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 332 ~~~~~~~~~~~~i~~~~~s~~g~~l~-~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
....|.++.|+|....++ ++ +|+.|.+||++. ..+++.+....... .++|+|+
T Consensus 186 --------G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~-~~Pl~KVi~~mRTN----------------~IswnPe 240 (433)
T KOG0268|consen 186 --------GADSISSVKFNPVETSILASCASDRSIVLYDLRQ-ASPLKKVILTMRTN----------------TICWNPE 240 (433)
T ss_pred --------CCCceeEEecCCCcchheeeeccCCceEEEeccc-CCccceeeeecccc----------------ceecCcc
Confidence 225799999999766554 44 679999999998 78877665443221 7999998
Q ss_pred CCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccce
Q 010256 410 GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKL 489 (514)
Q Consensus 410 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v 489 (514)
+-.+++|+.|..++.||+...........+|.+.|..+.|+|.|+-+++||.|.+|||..-..-...++.. ..--..|
T Consensus 241 afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh--tkRMq~V 318 (433)
T KOG0268|consen 241 AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH--TKRMQHV 318 (433)
T ss_pred ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh--Hhhhhee
Confidence 87888999999999999998777778899999999999999999999999999999993222111111111 0113578
Q ss_pred EEEEEcCCCCEEEEEe-cCcEEEEeC
Q 010256 490 LHLAWHPSENSIACAA-SNSLYMYYA 514 (514)
Q Consensus 490 ~~~~~spd~~~l~~~~-~~~~~i~~~ 514 (514)
.++.||-|.++|.+|+ +.++.+|-|
T Consensus 319 ~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 319 FCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred eEEEEeccccEEEecCCCcceeeeec
Confidence 9999999999999999 668899965
No 108
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.95 E-value=1.8e-25 Score=185.08 Aligned_cols=311 Identities=14% Similarity=0.210 Sum_probs=223.1
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
......+.|||||.-|++-+.|..+.+|++...--.... .........+.+ +... .+.
T Consensus 49 ~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~-----~~~~~~~~~~~~---r~~e--------------g~t 106 (406)
T KOG2919|consen 49 LNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA-----DGPLNFSKHLSY---RYQE--------------GET 106 (406)
T ss_pred hhhhccceeCCCCceEEeecccCeeeEEecChhhcccCC-----CCccccccceeE---Eecc--------------CCE
Confidence 355678999999999999999999999997532211000 000000111111 1111 155
Q ss_pred eeEEEEee-----CCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 115 INKIRWCQ-----SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 115 v~~i~~~~-----~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
|..-+|-+ .|+..++++.+.+.-|++||..+|+......
T Consensus 107 vydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~------------------------------------ 150 (406)
T KOG2919|consen 107 VYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYR------------------------------------ 150 (406)
T ss_pred EEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchh------------------------------------
Confidence 77878864 4556688999999999999999887543211
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceee
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN 269 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~ 269 (514)
.|| . ...-....+++|+|||..|.+|....|+++|+...+....
T Consensus 151 -------------------~yd----h-------------~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 151 -------------------AYD----H-------------QDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCP 194 (406)
T ss_pred -------------------hhh----h-------------HHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCc
Confidence 111 0 0000234589999999999999999999999954544332
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
......+.-.+..+.+.+++|+|.....++.|+...++-||.-..+..+ ..+.+|.+.|+.+.|
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl----------------~llggh~gGvThL~~ 258 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL----------------QLLGGHGGGVTHLQW 258 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce----------------eeecccCCCeeeEEe
Confidence 2211111223446778999999998679999999999999887665542 235577899999999
Q ss_pred ecCCCEEEEEeC--CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 350 ARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 350 s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
.++|..|.+|.. ..|..||++....++..+..|....+ ..| -....|++++|++|+.||.|++||+
T Consensus 259 ~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TN--------QRI----~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 259 CEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTN--------QRI----LFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred ccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCcc--------ceE----EEecCCCCceeeccCCCccEEEEec
Confidence 999999999863 79999999987888888888765221 111 3566799999999999999999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+........+..+...++.+.++|.-+++|++|..+....
T Consensus 327 k~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~~ 366 (406)
T KOG2919|consen 327 KDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFKY 366 (406)
T ss_pred CCCCCcccccccccccccceecCcccceeeeccCceeecC
Confidence 9854555778889999999999999999999987766655
No 109
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.7e-26 Score=205.69 Aligned_cols=269 Identities=13% Similarity=0.194 Sum_probs=214.8
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
+-+.|+ .. ..+++| ....|.+|+..+++...+..+. ...+. ++.|+++|..|
T Consensus 181 nlldWs--s~-n~laVa-lg~~vylW~~~s~~v~~l~~~~--------~~~vt-------Sv~ws~~G~~L--------- 232 (484)
T KOG0305|consen 181 NLLDWS--SA-NVLAVA-LGQSVYLWSASSGSVTELCSFG--------EELVT-------SVKWSPDGSHL--------- 232 (484)
T ss_pred hHhhcc--cC-CeEEEE-ecceEEEEecCCCceEEeEecC--------CCceE-------EEEECCCCCEE---------
Confidence 346674 22 244444 4568999999999877777764 13333 89999999999
Q ss_pred CcccCCCCCCcEEeceeecccccccccccccccccc-CccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeecc
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
++|..+|.+.||| ..... ..+.+ .+ |...|-+++|+ +..+.+| .|+.|..+|++..+....
T Consensus 233 ---avG~~~g~v~iwD-~~~~k------~~~~~-~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~---- 295 (484)
T KOG0305|consen 233 ---AVGTSDGTVQIWD-VKEQK------KTRTL-RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS---- 295 (484)
T ss_pred ---EEeecCCeEEEEe-hhhcc------ccccc-cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh----
Confidence 9999999999999 33322 22232 44 99999999998 6778888 999999999997766543
Q ss_pred CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec-C
Q 010256 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-N 352 (514)
Q Consensus 274 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~ 352 (514)
.+.+|...|..+.|++++ +++|+|+.|+.+.|||...... ...+.+|.+.|.+++|+| .
T Consensus 296 ---~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p----------------~~~~~~H~aAVKA~awcP~q 355 (484)
T KOG0305|consen 296 ---TLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEP----------------KFTFTEHTAAVKALAWCPWQ 355 (484)
T ss_pred ---hhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccc----------------cEEEeccceeeeEeeeCCCc
Confidence 367899999999999999 9999999999999999954333 234677889999999999 4
Q ss_pred CCEEEEEe---CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE--eCCCcEEEEec
Q 010256 353 GRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG--SYSNLFRVFGC 427 (514)
Q Consensus 353 g~~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~--~~dg~i~iwd~ 427 (514)
..+||+|+ |+.|++||..+ +..+..+..... |.++.|++..+.|+++ -.++.|.||+.
T Consensus 356 ~~lLAsGGGs~D~~i~fwn~~~-g~~i~~vdtgsQ----------------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 356 SGLLATGGGSADRCIKFWNTNT-GARIDSVDTGSQ----------------VCSLIWSKKYKELLSTHGYSENQITLWKY 418 (484)
T ss_pred cCceEEcCCCcccEEEEEEcCC-CcEecccccCCc----------------eeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence 55777753 59999999997 777776654433 3489999998777654 36778999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+. .+...+.+|..+|..++++||+..+++|+.|.++++
T Consensus 419 ps~-~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 419 PSM-KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRF 457 (484)
T ss_pred ccc-ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEe
Confidence 985 555899999999999999999999999999999999
No 110
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=7.8e-25 Score=180.45 Aligned_cols=278 Identities=13% Similarity=0.157 Sum_probs=208.1
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
...+.|++|.|+|.++.|+.+++||++++|++...... ..+ .|.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~-----------------------~~~-~~~------------ 54 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK-----------------------LKF-KHG------------ 54 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh-----------------------hhe-ecC------------
Confidence 34689999999999999999999999999998765421 111 123
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
.++.+.+|. +...+++|+.||.|+.+|+.+++...
T Consensus 55 ~plL~c~F~---d~~~~~~G~~dg~vr~~Dln~~~~~~------------------------------------------ 89 (323)
T KOG1036|consen 55 APLLDCAFA---DESTIVTGGLDGQVRRYDLNTGNEDQ------------------------------------------ 89 (323)
T ss_pred Cceeeeecc---CCceEEEeccCceEEEEEecCCccee------------------------------------------
Confidence 779999994 34589999999999999998765211
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+..|..+|.++.+++....+++| .|++|++||.+......
T Consensus 90 ------------------------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~--- 130 (323)
T KOG1036|consen 90 ------------------------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG--- 130 (323)
T ss_pred ------------------------------------eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc---
Confidence 25688899999999988888888 99999999998522211
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
++. ....|.++... + +.|+.|+.|..+.+||+++.....+ ..+ ...+-.++++++-|
T Consensus 131 -----~~d-~~kkVy~~~v~--g-~~LvVg~~~r~v~iyDLRn~~~~~q---~re-----------S~lkyqtR~v~~~p 187 (323)
T KOG1036|consen 131 -----TFD-QGKKVYCMDVS--G-NRLVVGTSDRKVLIYDLRNLDEPFQ---RRE-----------SSLKYQTRCVALVP 187 (323)
T ss_pred -----ccc-cCceEEEEecc--C-CEEEEeecCceEEEEEcccccchhh---hcc-----------ccceeEEEEEEEec
Confidence 122 23477777764 3 6788899999999999998664321 000 11224689999999
Q ss_pred CCCEEEEEe-CCeEEEEEccCC---CCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 352 NGRHILSRD-YMTLKLWDINMD---SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
++.-.++++ +|+|.+=.++.. ......++.|..... ..+.++.|.+++|+|-.+.+|||+.||.|.+||+
T Consensus 188 n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~------~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 188 NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEK------DTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccC------CceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 877666654 698887666541 134456777765432 2234556779999999999999999999999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecC
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS 460 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s 460 (514)
.+.+ .+..+......|..++|+.+|..||.++
T Consensus 262 ~~rK-rl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 262 FNRK-RLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred cchh-hhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 9764 4467777778899999999999999986
No 111
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.2e-25 Score=200.98 Aligned_cols=325 Identities=16% Similarity=0.221 Sum_probs=230.4
Q ss_pred hhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCC
Q 010256 21 QVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE 100 (514)
Q Consensus 21 ~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 100 (514)
|.|...-...+.+|++.|.|++..|.|.+||+|+.||+|+||.+.+++.+ ..
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv-----------------------r~----- 437 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV-----------------------RT----- 437 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE-----------------------EE-----
Confidence 45555555567899999999999999999999999999999999988753 22
Q ss_pred CccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeec
Q 010256 101 PEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180 (514)
Q Consensus 101 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 180 (514)
+...+.|.+|+|+|.++-..||++-.+. +.|-+..-|.........
T Consensus 438 --------~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~------------------------- 483 (733)
T KOG0650|consen 438 --------VQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTK------------------------- 483 (733)
T ss_pred --------EeecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhcchh-------------------------
Confidence 2223669999999988766666665544 555554433111000000
Q ss_pred cCCCccccccCCCCCCcccC----CCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-c---
Q 010256 181 ANGGCGERNFGCASNDSSFP----PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D--- 252 (514)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~~~----~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~--- 252 (514)
+.++. ...+..+..|. -...+......+ ..-.|...|..+.|+..|.+|++. .
T Consensus 484 ---------------ell~~~~~~~~p~~~~~~W~-~~~~~e~~~~v~---~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 484 ---------------ELLASAPNESEPDAAVVTWS-RASLDELEKGVC---IVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred ---------------hhhhcCCCccCCcccceeec-hhhhhhhccceE---EEEecCCccceeeeecCCceEEEeccCCC
Confidence 00011 11223444444 111111111111 124677899999999999999986 2
Q ss_pred CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCC
Q 010256 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (514)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 332 (514)
...|.|+++....... .+....+.|.++.|+|.. .+|++++ ...|++||+....++ +.+..
T Consensus 545 ~~~VliHQLSK~~sQ~--------PF~kskG~vq~v~FHPs~-p~lfVaT-q~~vRiYdL~kqelv----KkL~t----- 605 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQS--------PFRKSKGLVQRVKFHPSK-PYLFVAT-QRSVRIYDLSKQELV----KKLLT----- 605 (733)
T ss_pred cceEEEEecccccccC--------chhhcCCceeEEEecCCC-ceEEEEe-ccceEEEehhHHHHH----HHHhc-----
Confidence 4678899987443321 344567889999999998 5666555 468999999876553 22111
Q ss_pred ccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC
Q 010256 333 TRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (514)
Q Consensus 333 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 411 (514)
....|.+++.+|.|..|+.|+. +.+..||+....++.+++..|...+. +++|++.=.
T Consensus 606 -------g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr---------------~Va~H~ryP 663 (733)
T KOG0650|consen 606 -------GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVR---------------SVAFHKRYP 663 (733)
T ss_pred -------CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhh---------------hhhhccccc
Confidence 1247999999999999999875 99999999987889999999987643 899999999
Q ss_pred EEEEEeCCCcEEEEecCCCc--------eeeeeecCCCcc----eeEEEECCCCCceeecCCCCeEEE
Q 010256 412 RVATGSYSNLFRVFGCSEGS--------AESTTLEASKNP----MRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 412 ~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~----v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
++++|+.||.+.||.-.-.. ..+..+.+|... |-...|+|...+|.+++.||+|++
T Consensus 664 Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirl 731 (733)
T KOG0650|consen 664 LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRL 731 (733)
T ss_pred eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEe
Confidence 99999999999998632111 123677888766 778889999999999999999998
No 112
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2.8e-25 Score=190.99 Aligned_cols=242 Identities=17% Similarity=0.196 Sum_probs=193.4
Q ss_pred cccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010256 229 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 307 (514)
+.||...|+++.++|+...++++ .|..|++|........ .....|..+|+.+..+|.| .+|++++.|++.
T Consensus 257 ~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~--------~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w 327 (506)
T KOG0289|consen 257 LKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP--------TSSRPHEEPVTGLSLHPTG-EYLLSASNDGTW 327 (506)
T ss_pred ccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc--------cccccccccceeeeeccCC-cEEEEecCCceE
Confidence 37899999999999999999999 8999999998755432 2456799999999999999 899999999999
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccc
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
.+.|++++..... .-... ..-.+++.+|+|||..+.+|. |+.|+|||+.. +..+..+.+|.+.+
T Consensus 328 ~Fsd~~~g~~lt~---vs~~~-----------s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks-~~~~a~Fpght~~v 392 (506)
T KOG0289|consen 328 AFSDISSGSQLTV---VSDET-----------SDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS-QTNVAKFPGHTGPV 392 (506)
T ss_pred EEEEccCCcEEEE---Eeecc-----------ccceeEEeeEcCCceEEeccCCCceEEEEEcCC-ccccccCCCCCCce
Confidence 9999999876421 11100 113589999999999999986 59999999997 77889999998774
Q ss_pred cccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec-CCCcceeEEEECCCCCceeecCCCCeE
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-ASKNPMRRQVQTPSRPSRPLGSLSGVV 465 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~v 465 (514)
. .++|+.+|.||+++++|+.|++||++..+.. +++. .....+.++.|.+.|.+|+.++.|=.|
T Consensus 393 k---------------~i~FsENGY~Lat~add~~V~lwDLRKl~n~-kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 393 K---------------AISFSENGYWLATAADDGSVKLWDLRKLKNF-KTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred e---------------EEEeccCceEEEEEecCCeEEEEEehhhccc-ceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence 3 9999999999999999999999999876433 3333 334479999999999999999999888
Q ss_pred EEee-CCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEE
Q 010256 466 RRVK-GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 512 (514)
Q Consensus 466 ~i~~-~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~ 512 (514)
++.. ..+.+ .......+|.+..+.+.|.....++++++.+.++-+
T Consensus 457 y~~~k~~k~W--~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 457 YICKKKTKSW--TEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred EEEecccccc--eeeehhhhcccccceeeecccceEEeeccchhheEE
Confidence 8843 11122 122234457788999999999999999886655443
No 113
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.1e-24 Score=167.71 Aligned_cols=250 Identities=14% Similarity=0.167 Sum_probs=183.5
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecC---CCcEEEEEec-C
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSS-K 304 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~---~~~~l~~~~~-d 304 (514)
+.|.+.|.|.+|+|.|++|++| .|.+|++.-++....... .....+.-|.+.|+.++|..+ ++.+|++++. |
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~---g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNAT---GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEeccccccccc---CcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 6789999999999999999999 999999987663321110 011245668999999999643 3356776654 6
Q ss_pred CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeec-
Q 010256 305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH- 382 (514)
Q Consensus 305 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~- 382 (514)
..|.+-|...++.. ..+.+|++-|.++ ++-+|-++++|+. .+|++||++. ..++.++...
T Consensus 163 c~iy~tdc~~g~~~----------------~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv-~~~v~~l~~~~ 224 (350)
T KOG0641|consen 163 CKIYITDCGRGQGF----------------HALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRV-NSCVNTLDNDF 224 (350)
T ss_pred ceEEEeecCCCCcc----------------eeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeec-cceeeeccCcc
Confidence 66777777666542 2256777888766 3446889999875 9999999996 5566555321
Q ss_pred -cccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCC
Q 010256 383 -EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 383 -~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
.... .-..|.+++..|.|++|++|-.|....+||+..+ ...+.+..|...|+++.|+|...|++++|-
T Consensus 225 ~~~gl----------essavaav~vdpsgrll~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~sy 293 (350)
T KOG0641|consen 225 HDGGL----------ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSY 293 (350)
T ss_pred cCCCc----------ccceeEEEEECCCcceeeeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecc
Confidence 1110 0113558999999999999999999999999976 556899999999999999999999999999
Q ss_pred CCeEEE--eeCCCCCccccCCc-ccccccceEEEEEcCCCCEEE-EEecCcEEEEe
Q 010256 462 SGVVRR--VKGADNSALDANGN-AFDFSMKLLHLAWHPSENSIA-CAASNSLYMYY 513 (514)
Q Consensus 462 d~~v~i--~~~~~~~~~~~~~~-~~~~~~~v~~~~~spd~~~l~-~~~~~~~~i~~ 513 (514)
|..|++ ++|..-. ++... .-+|...+..+.|+|..-.++ +..+....+|.
T Consensus 294 d~~ikltdlqgdla~--el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 294 DMKIKLTDLQGDLAH--ELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred cceEEEeecccchhh--cCceEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 999999 3332111 22222 227899999999999875555 55577777874
No 114
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.5e-25 Score=182.87 Aligned_cols=241 Identities=19% Similarity=0.317 Sum_probs=184.4
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
+-.|..+|++++.+ |.++|+|+.|-+|+|||+...... ..+-.|.
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql-----------------------g~ll~Ha---------- 83 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL-----------------------GILLSHA---------- 83 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh-----------------------cceeccc----------
Confidence 45799999999987 999999999999999999876643 3455566
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|+++.|.+......|++|+.||.|.+|++..-++...
T Consensus 84 --gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s--------------------------------------- 122 (362)
T KOG0294|consen 84 --GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS--------------------------------------- 122 (362)
T ss_pred --cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee---------------------------------------
Confidence 889999996644444899999999999999875432111
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+.+|.+.|+.++.+|.+++-++. .|+.+++|++-+++..+.
T Consensus 123 --------------------------------------lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v 164 (362)
T KOG0294|consen 123 --------------------------------------LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV 164 (362)
T ss_pred --------------------------------------ecccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee
Confidence 36888899999999999988877 999999999987765543
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
. . .....+.+.|+|.| ..|+.+..+ .|-+|.+.+..+. .....+ ..+.++.|
T Consensus 165 ~------~---L~~~at~v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~----~~i~~~-------------~r~l~~~~ 216 (362)
T KOG0294|consen 165 L------N---LKNKATLVSWSPQG-DHFVVSGRN-KIDIYQLDNASVF----REIENP-------------KRILCATF 216 (362)
T ss_pred e------c---cCCcceeeEEcCCC-CEEEEEecc-EEEEEecccHhHh----hhhhcc-------------ccceeeee
Confidence 2 1 23334559999999 677766654 7889998876542 111111 24666777
Q ss_pred ecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEE--EcCCCCEEEEEeCCCcEEEEe
Q 010256 350 ARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC--LSGDGGRVATGSYSNLFRVFG 426 (514)
Q Consensus 350 s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~s~~~dg~i~iwd 426 (514)
-. +..|++| +++.|.+||.+. ..++..+..|...+. ++. -.|++.+|++++.||.|++||
T Consensus 217 l~-~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK---------------~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 217 LD-GSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVK---------------DIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred cC-CceEEEecCCceEEEeccCC-Cccceeeecchhhee---------------eeEEEecCCceEEEEeccCceEEEEE
Confidence 64 4555555 559999999997 889999999987643 444 357889999999999999999
Q ss_pred cCCC
Q 010256 427 CSEG 430 (514)
Q Consensus 427 ~~~~ 430 (514)
+...
T Consensus 280 ~~~~ 283 (362)
T KOG0294|consen 280 IDME 283 (362)
T ss_pred cccc
Confidence 9865
No 115
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.5e-25 Score=179.83 Aligned_cols=272 Identities=13% Similarity=0.159 Sum_probs=197.5
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCcc-EEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
++.|.+|+|+|..+ .++++++.|++||+|+++.. ....
T Consensus 27 ~DsIS~l~FSP~~~-~~~~A~SWD~tVR~wevq~~g~~~~---------------------------------------- 65 (347)
T KOG0647|consen 27 EDSISALAFSPQAD-NLLAAGSWDGTVRIWEVQNSGQLVP---------------------------------------- 65 (347)
T ss_pred ccchheeEeccccC-ceEEecccCCceEEEEEecCCcccc----------------------------------------
Confidence 38899999988443 47778899999999999762 2100
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
.....|.++|.+++|+.||..+++| .|+.+++||+.+++..
T Consensus 66 ------------------------------------ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~-- 107 (347)
T KOG0647|consen 66 ------------------------------------KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS-- 107 (347)
T ss_pred ------------------------------------hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee--
Confidence 0025688999999999999999999 9999999999977432
Q ss_pred eeccCCCcccccCCceEEEEEecCCC-cEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
.+..|.++|..+.|-+... ..|++|+.|.+|+.||+|.... +.+++.+ ..+.++.
T Consensus 108 -------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p----v~t~~LP-------------eRvYa~D 163 (347)
T KOG0647|consen 108 -------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP----VATLQLP-------------ERVYAAD 163 (347)
T ss_pred -------eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe----eeeeecc-------------ceeeehh
Confidence 4567999999999987651 3899999999999999998665 3334433 2455554
Q ss_pred EecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 349 FARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 349 ~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
.- ..+++.+ .+..|.+|+++.+....+.....-.. . +-+++.-+|....+.|+-+|++.|..+
T Consensus 164 v~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~-----------Q---~R~va~f~d~~~~alGsiEGrv~iq~i 227 (347)
T KOG0647|consen 164 VL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKW-----------Q---TRCVACFQDKDGFALGSIEGRVAIQYI 227 (347)
T ss_pred cc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccc-----------e---eeEEEEEecCCceEeeeecceEEEEec
Confidence 43 3355554 45899999997633333333222111 1 227887788888899999999999998
Q ss_pred CCCce-eeeeecCCC---------cceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCC
Q 010256 428 SEGSA-ESTTLEASK---------NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPS 497 (514)
Q Consensus 428 ~~~~~-~~~~~~~~~---------~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 497 (514)
..+.. ...+++.|+ .+|++++|+|....|++++.||++.+.+...-. -......+...|++.+|+.+
T Consensus 228 d~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~---kLk~s~~~~qpItcc~fn~~ 304 (347)
T KOG0647|consen 228 DDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART---KLKTSETHPQPITCCSFNRN 304 (347)
T ss_pred CCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh---hhhccCcCCCccceeEecCC
Confidence 87522 226677776 357889999999999999999999993322111 11122346889999999999
Q ss_pred CCEEEEEe
Q 010256 498 ENSIACAA 505 (514)
Q Consensus 498 ~~~l~~~~ 505 (514)
|.++|-+.
T Consensus 305 G~ifaYA~ 312 (347)
T KOG0647|consen 305 GSIFAYAL 312 (347)
T ss_pred CCEEEEEe
Confidence 99999654
No 116
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.3e-25 Score=183.22 Aligned_cols=303 Identities=12% Similarity=0.153 Sum_probs=211.0
Q ss_pred eeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccccc
Q 010256 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (514)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (514)
..+++|. +.|++++| +.||++|++++.|++|++|+++........-+. ......+
T Consensus 80 ~~LKgH~------------~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R-----------~nve~dh 134 (420)
T KOG2096|consen 80 SVLKGHK------------KEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEHRCIR-----------QNVEYDH 134 (420)
T ss_pred hhhhccC------------CceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhhhHhh-----------ccccCCC
Confidence 4578888 88999999 789999999999999999999874322111111 0011124
Q ss_pred CCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeecccccccccccc----ccccccCccCeEEEEECCCCCEEE
Q 010256 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCR----RIYAHAHDYHINSISNNSDGETFI 249 (514)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~ 249 (514)
++.+.|.||.+.+ ++..-...++++|.+....+........ ..+...|.-.+..+-....+.+|+
T Consensus 135 pT~V~FapDc~s~-----------vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~im 203 (420)
T KOG2096|consen 135 PTRVVFAPDCKSV-----------VVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIM 203 (420)
T ss_pred ceEEEECCCcceE-----------EEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEE
Confidence 4578999999876 2344466688888844444432221111 112345667777888888899999
Q ss_pred Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcc--cccccccee
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL--CDTHSKLFE 326 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~ 326 (514)
++ .|..|.+|+++ ++ ....+ ......-+..+.+|+| +++++++.---+++|.+--++. .+...+.
T Consensus 204 sas~dt~i~lw~lk-Gq-~L~~i-------dtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rv-- 271 (420)
T KOG2096|consen 204 SASLDTKICLWDLK-GQ-LLQSI-------DTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRV-- 271 (420)
T ss_pred EecCCCcEEEEecC-Cc-eeeee-------ccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhh--
Confidence 99 89999999998 44 33322 2233444667899999 8999999999999999743221 1111122
Q ss_pred ccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCC------CCceeeee--eccccccccccccccCC
Q 010256 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMD------SGPVATFQ--VHEHLRPKLCDLYENDS 397 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~------~~~~~~~~--~~~~~~~~~~~~~~~~~ 397 (514)
..+.+|.+.|..++|+++.+.+++.+ ||+++|||.+-. .+.+++.. .|.... .
T Consensus 272 --------f~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~---------~- 333 (420)
T KOG2096|consen 272 --------FSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGS---------E- 333 (420)
T ss_pred --------heeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCC---------C-
Confidence 23678999999999999999999976 599999998641 11122211 111000 0
Q ss_pred ccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 398 IFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 398 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
-..+..+|+|+.||.+. ...+++|..++++.....-..|...|.++.|+++|+++++++ |+.+++
T Consensus 334 ---p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv 398 (420)
T KOG2096|consen 334 ---PVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRV 398 (420)
T ss_pred ---ceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeee
Confidence 11689999999988654 357999999988666555568999999999999999999997 788888
No 117
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.7e-23 Score=187.89 Aligned_cols=416 Identities=13% Similarity=0.150 Sum_probs=275.5
Q ss_pred ccccccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccc
Q 010256 11 AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (514)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (514)
.+.-.+|++....... ..-...+.|.+++.+|.++.++.|+.||.+..++...++..
T Consensus 89 sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~-------------------- 145 (691)
T KOG2048|consen 89 SGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT-------------------- 145 (691)
T ss_pred CceEEEEecccCceeE---EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEE--------------------
Confidence 3456678887742211 11234689999999999999999999997777776655532
Q ss_pred eeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecc
Q 010256 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (514)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (514)
+.+.+.-.+ +.|.++.| ++++..+++|+.||.|++||+..+....................++
T Consensus 146 -~~r~l~rq~------------sRvLslsw--~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW-- 208 (691)
T KOG2048|consen 146 -YKRSLMRQK------------SRVLSLSW--NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW-- 208 (691)
T ss_pred -EEeeccccc------------ceEEEEEe--cCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEE--
Confidence 334443333 78999999 6777789999999999999999988666554444333222334455
Q ss_pred cccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEE
Q 010256 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 250 (514)
++.+..++.. ++|.+.|+|++|| . ..+...+.+ ..|...|.+++..+++.++.+
T Consensus 209 -----Sv~~Lrd~tI-------------~sgDS~G~V~FWd----~---~~gTLiqS~-~~h~adVl~Lav~~~~d~vfs 262 (691)
T KOG2048|consen 209 -----SVLFLRDSTI-------------ASGDSAGTVTFWD----S---IFGTLIQSH-SCHDADVLALAVADNEDRVFS 262 (691)
T ss_pred -----EEEEeecCcE-------------EEecCCceEEEEc----c---cCcchhhhh-hhhhcceeEEEEcCCCCeEEE
Confidence 5666666654 8999999999999 2 223333333 678999999999999888888
Q ss_pred e-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccc---------
Q 010256 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT--------- 320 (514)
Q Consensus 251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~--------- 320 (514)
+ .|+.|..|...+.+..... . .....|...+.+++..++ .+++|+.|..+.+--.+..+....
T Consensus 263 aGvd~~ii~~~~~~~~~~wv~--~--~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~ 335 (691)
T KOG2048|consen 263 AGVDPKIIQYSLTTNKSEWVI--N--SRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPAS 335 (691)
T ss_pred ccCCCceEEEEecCCccceee--e--ccccCCcccceeeeeecc---eEEecceeeEEEEccccccCchhhhcccccccc
Confidence 7 8999999988766543211 1 134567888999998874 788899998887765543211100
Q ss_pred ----------cccceeccCC---------------CC-ccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCC
Q 010256 321 ----------HSKLFEEQEA---------------PG-TRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSG 374 (514)
Q Consensus 321 ----------~~~~~~~~~~---------------~~-~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~ 374 (514)
....+..+.. +. .......-...|.+.+.||+|++++.+.-.+++||.+....
T Consensus 336 ~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~- 414 (691)
T KOG2048|consen 336 DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP- 414 (691)
T ss_pred ceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc-
Confidence 0001101100 00 00111122357899999999999999887889999998633
Q ss_pred ceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe-CCCcEEEEecCCCceee-eee--cCCCcceeEEEEC
Q 010256 375 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAES-TTL--EASKNPMRRQVQT 450 (514)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~-~~~--~~~~~~v~~~~~~ 450 (514)
.+.......-.. ...+...+.|+-|++.++.++ .+..+.++++.+..... ..+ +.-..+|..+..+
T Consensus 415 ~vk~~~v~~~~~----------~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~S 484 (691)
T KOG2048|consen 415 NVKVINVDDVPL----------ALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVS 484 (691)
T ss_pred ceeEEEeccchh----------hhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEc
Confidence 333322222110 011233688898999888777 77888888887653221 111 1345678999999
Q ss_pred CCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCC-CCEEEEE-ecCcEEEEe
Q 010256 451 PSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPS-ENSIACA-ASNSLYMYY 513 (514)
Q Consensus 451 ~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-~~~l~~~-~~~~~~i~~ 513 (514)
|+|+|+|..+.++.|.+++........+.. .....|+.++++|. -+.|+++ ++++++-|.
T Consensus 485 sdG~yiaa~~t~g~I~v~nl~~~~~~~l~~---rln~~vTa~~~~~~~~~~lvvats~nQv~efd 546 (691)
T KOG2048|consen 485 SDGNYIAAISTRGQIFVYNLETLESHLLKV---RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFD 546 (691)
T ss_pred CCCCEEEEEeccceEEEEEcccceeecchh---ccCcceeeeeccccccCcEEEEecCCeEEEEe
Confidence 999999999999999994433322111211 23478999999954 5556644 577777764
No 118
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.5e-26 Score=206.24 Aligned_cols=267 Identities=19% Similarity=0.250 Sum_probs=203.2
Q ss_pred cCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCc
Q 010256 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 277 (514)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 277 (514)
++|+.||.|++|+ ...........+... +..|...|+++....+++.|+++ .|-+|++|+..... ...+ .+
T Consensus 41 fTgGRDg~i~~W~-~~~d~~~~s~~~~as-me~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~-----st 112 (735)
T KOG0308|consen 41 FTGGRDGIIRLWS-VTQDSNEPSTPYIAS-MEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCM-----ST 112 (735)
T ss_pred EecCCCceEEEec-cccccCCcccchhhh-hhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhH-----hh
Confidence 9999999999999 333222222222333 37899999999999999999999 99999999998654 1111 26
Q ss_pred ccccCCceEEEEE-ecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceee-ccccceeEEEEecCCCE
Q 010256 278 MEDLTEVITSAEF-HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT-EIIASISDIKFARNGRH 355 (514)
Q Consensus 278 ~~~~~~~i~~v~~-~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~g~~ 355 (514)
+..|.+.|.++++ .++. .++|+|+.|+.|.+||+.++.. +.+..++... ...+. ++..+|++++.++.|..
T Consensus 113 ir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~--~l~~s~n~~t----~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTA--TLVASFNNVT----VNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred hhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcch--hhhhhccccc----cccCCCCCccceeeeecCCcceE
Confidence 7789999999999 6776 8999999999999999998743 1122222211 12223 78889999999999988
Q ss_pred EEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceee
Q 010256 356 ILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 434 (514)
Q Consensus 356 l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 434 (514)
+++|+- +.+++||.++ .+.+..+.+|...+. .+..++||..+++++.||+|++||+....++
T Consensus 186 ivsGgtek~lr~wDprt-~~kimkLrGHTdNVr---------------~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl- 248 (735)
T KOG0308|consen 186 IVSGGTEKDLRLWDPRT-CKKIMKLRGHTDNVR---------------VLLVNDDGTRLLSASSDGTIRLWDLGQQRCL- 248 (735)
T ss_pred EEecCcccceEEecccc-ccceeeeeccccceE---------------EEEEcCCCCeEeecCCCceEEeeecccccee-
Confidence 888765 9999999998 888888889987644 8899999999999999999999999876554
Q ss_pred eeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCE
Q 010256 435 TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENS 500 (514)
Q Consensus 435 ~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ 500 (514)
.++..|.+.|+++..+|+-..+.+|+.||.|...+-..+.. ..........|..+..+...+-
T Consensus 249 ~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~---~tlick~daPv~~l~~~~~~~~ 311 (735)
T KOG0308|consen 249 ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK---STLICKEDAPVLKLHLHEHDNS 311 (735)
T ss_pred eeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchh---heEeecCCCchhhhhhccccCC
Confidence 78999999999999999999999999999999932222211 1112223455555555544333
No 119
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.5e-24 Score=188.10 Aligned_cols=288 Identities=16% Similarity=0.184 Sum_probs=210.8
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEE-EEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
.-+|.++++ ++++.+.++++.+++|.-|++.+++.. .+..-. .
T Consensus 142 ~~s~~~val--s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~----------------------------e------ 185 (479)
T KOG0299|consen 142 QLSVTSVAL--SPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD----------------------------E------ 185 (479)
T ss_pred cCcceEEEe--eccccceeecCCCcceeeeehhcCcccccccccc----------------------------h------
Confidence 378999999 677789999999999999999988632 111100 0
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+ + . .. ..+.+....+|...+.+++.++||++|++| .|..|.||+.++.+...
T Consensus 186 --------v-------~------k-~~----~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~- 238 (479)
T KOG0299|consen 186 --------V-------L------K-SH----GNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK- 238 (479)
T ss_pred --------h-------h------h-hc----cCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhh-
Confidence 0 0 0 00 000000003788999999999999999999 89999999999776553
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+.+|.+.|.+++|-..- +.+++++.|+.+++|++.....+ . ++.+|.+.|.++..
T Consensus 239 -------~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~v----e------------tlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 239 -------VFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYV----E------------TLYGHQDGVLGIDA 294 (479)
T ss_pred -------cccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHH----H------------HHhCCccceeeech
Confidence 578999999999998765 78999999999999999876542 2 25667789999998
Q ss_pred ecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
...++.+-+| .|+++++|++.. .....+.++..... +++|- +...+++|+.+|.|.+|++.
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sid---------------cv~~I-n~~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSID---------------CVAFI-NDEHFVSGSDNGSIALWSLL 356 (479)
T ss_pred hcccceEEeccccceeEEEeccc--cceeeeeCCCCCee---------------eEEEe-cccceeeccCCceEEEeeec
Confidence 8888888776 579999999953 33444555554322 77876 45678899999999999998
Q ss_pred CCceeeeeecCC-----------CcceeEEEECCCCCceeecCCCCeEEEeeCCCC-CccccCCcccccccceEEEEEcC
Q 010256 429 EGSAESTTLEAS-----------KNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADN-SALDANGNAFDFSMKLLHLAWHP 496 (514)
Q Consensus 429 ~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp 496 (514)
..+.+...-..| ..+|++++..|...++++||.+|.||++.-... ....+. ..+...+-|++++|++
T Consensus 357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l-~~ls~~GfVNsl~f~~ 435 (479)
T KOG0299|consen 357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLL-YSLSLVGFVNSLAFSN 435 (479)
T ss_pred ccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccccee-eecccccEEEEEEEcc
Confidence 764443222222 237899999999999999999999999222111 110111 1224678999999999
Q ss_pred CCCEEEEEe
Q 010256 497 SENSIACAA 505 (514)
Q Consensus 497 d~~~l~~~~ 505 (514)
+|++|++|.
T Consensus 436 sgk~ivagi 444 (479)
T KOG0299|consen 436 SGKRIVAGI 444 (479)
T ss_pred CCCEEEEec
Confidence 999888765
No 120
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.6e-25 Score=190.27 Aligned_cols=295 Identities=15% Similarity=0.167 Sum_probs=209.4
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
.+.|+||.|+|....|++++.||+++||.++..... .+..+.-.. .+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~---------------------~lqS~~l~~------------fP 259 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP---------------------KLQSIHLEK------------FP 259 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh---------------------hheeeeecc------------Cc
Confidence 478999999999999999999999999999765431 112222122 56
Q ss_pred eeEEEEeeCCCCc-EEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 115 INKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 115 v~~i~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
|.+.+|. ++|. .+++++.......||+.+.+..++......+.. .+. ....+++++.+
T Consensus 260 i~~a~f~--p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~-----~~e-------~FeVShd~~fi------- 318 (514)
T KOG2055|consen 260 IQKAEFA--PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEK-----SME-------RFEVSHDSNFI------- 318 (514)
T ss_pred cceeeec--CCCceEEEecccceEEEEeeccccccccccCCCCcccc-----hhh-------eeEecCCCCeE-------
Confidence 9999995 4666 888999999999999999887666554433211 111 45667888887
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeec
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 272 (514)
+..+..|.|.+.. ..+.+. . .. ..-.+.|.+++|+.|++.|+++ .+|.|.+||++......+..+
T Consensus 319 -----a~~G~~G~I~lLh-akT~el---i---~s--~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D 384 (514)
T KOG2055|consen 319 -----AIAGNNGHIHLLH-AKTKEL---I---TS--FKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD 384 (514)
T ss_pred -----EEcccCceEEeeh-hhhhhh---h---he--eeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee
Confidence 9999999999754 111111 1 11 1234778999999999988877 999999999997644433311
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 352 (514)
+ ..-.=++++.++++ .+||+|+..|.|.|||..+-.. ...|.+...+......|++++|+||
T Consensus 385 ------~-G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~----------s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 385 ------D-GSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFA----------STNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred ------c-CccceeeeeecCCC-ceEEeccCcceEEEeccchhhc----------cCCCCchhhhhhhheeeeeeeeCcc
Confidence 1 11123577888998 8999999999999999765321 1112223334444578999999999
Q ss_pred CCEEEEEeC---CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 353 GRHILSRDY---MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 353 g~~l~~~~~---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
++.|+.++. ..+++-.+.+ ......++... ..+.-|++++|||.|.+||.|..+|++.+|.+.
T Consensus 447 ~qiLAiaS~~~knalrLVHvPS-~TVFsNfP~~n------------~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRLVHVPS-CTVFSNFPTSN------------TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhhhhccccceEEEeccc-eeeeccCCCCC------------CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 999998753 6788877764 33333333222 333446699999999999999999999999875
No 121
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=8.5e-25 Score=198.86 Aligned_cols=273 Identities=14% Similarity=0.241 Sum_probs=218.7
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|...|..+++.+.. .+++++.||++++|+-..++.. -...+.+|.
T Consensus 10 l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l---------------------~~~~~~~~~---------- 57 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYL---------------------ETHAFEGPK---------- 57 (745)
T ss_pred eccCccchheeEecCCe-EEeecCCCCceeeeeccCcccc---------------------cceecccCc----------
Confidence 45899999999987654 8899999999999997655432 223455555
Q ss_pred cccceeE-EEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 111 IEEKINK-IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 111 ~~~~v~~-i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
+-|.. +++.+ .++..+++|+.|.+|.+|...+.....
T Consensus 58 --g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~--------------------------------------- 95 (745)
T KOG0301|consen 58 --GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLY--------------------------------------- 95 (745)
T ss_pred --ceeeccceecc-ccCcceEeecccceEEEEecCCCCchh---------------------------------------
Confidence 55666 88866 455579999999999999876653211
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
++.+|...|.+++...++. +++| .|.++++|-...- ..
T Consensus 96 --------------------------------------~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l--~~ 134 (745)
T KOG0301|consen 96 --------------------------------------TLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL--VY 134 (745)
T ss_pred --------------------------------------hhhccccceeeeecCCcCc-eEecccccceEEecchhh--hc
Confidence 1489999999999888887 8888 8999999987522 21
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
.+++|...|++++.-|.+ .+++|+.|..|++|.- ++. .+ +|.+|...|+.++
T Consensus 135 --------~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~----l~------------tf~gHtD~VRgL~ 186 (745)
T KOG0301|consen 135 --------SLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTL----LK------------TFSGHTDCVRGLA 186 (745)
T ss_pred --------ccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cch----hh------------hhccchhheeeeE
Confidence 578999999999999986 8999999999999985 333 23 3666778999999
Q ss_pred EecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 349 FARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 349 ~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+-+++.++-++.||.|++|++. +..+.++.+|... +++++..+++..+++++.|++++||+..
T Consensus 187 vl~~~~flScsNDg~Ir~w~~~--ge~l~~~~ghtn~---------------vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 187 VLDDSHFLSCSNDGSIRLWDLD--GEVLLEMHGHTNF---------------VYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EecCCCeEeecCCceEEEEecc--CceeeeeeccceE---------------EEEEEecCCCCeEEEecCCceEEEeecC
Confidence 9999888888888999999995 8999999999876 3488888889999999999999999987
Q ss_pred CCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 429 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
...+.+.-....++++.+.++|. +++|+.||.||+
T Consensus 250 ---e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrV 284 (745)
T KOG0301|consen 250 ---ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRV 284 (745)
T ss_pred ---ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEE
Confidence 23366666677899998887765 567778999999
No 122
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.2e-25 Score=184.22 Aligned_cols=297 Identities=16% Similarity=0.268 Sum_probs=222.3
Q ss_pred ceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceec
Q 010256 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (514)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (514)
+++.+++.||. +.|..++-. .....+.+++.|.+.+||.++++++....
T Consensus 138 ~~lvre~~GHk------------DGiW~Vaa~--~tqpi~gtASADhTA~iWs~Esg~CL~~Y----------------- 186 (481)
T KOG0300|consen 138 FRLVRELEGHK------------DGIWHVAAD--STQPICGTASADHTARIWSLESGACLATY----------------- 186 (481)
T ss_pred Eeehhhhcccc------------cceeeehhh--cCCcceeecccccceeEEeeccccceeee-----------------
Confidence 34556677887 889988874 33347888999999999999988754332
Q ss_pred ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE
Q 010256 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 249 (514)
.+|.+.|+++.|++.+.+++
T Consensus 187 ------------------------------------------------------------~GH~GSVNsikfh~s~~L~l 206 (481)
T KOG0300|consen 187 ------------------------------------------------------------TGHTGSVNSIKFHNSGLLLL 206 (481)
T ss_pred ------------------------------------------------------------cccccceeeEEeccccceEE
Confidence 56666677777777776666
Q ss_pred Ee-cCCeEEEEeccC----CC----------------------------ceeeeeccCCCcccccCCceEEEEEecCCCc
Q 010256 250 SA-DDLRINLWNLEI----SN----------------------------QSFNIVDVKPANMEDLTEVITSAEFHPTHCN 296 (514)
Q Consensus 250 s~-~d~~i~iwd~~~----~~----------------------------~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 296 (514)
++ .|++..||...- ++ ..-..+......+.+|.+.|.+..|...| .
T Consensus 207 TaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~ 285 (481)
T KOG0300|consen 207 TASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-Q 285 (481)
T ss_pred EccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-c
Confidence 66 666666665110 00 00000111123577899999999999888 8
Q ss_pred EEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCc
Q 010256 297 MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGP 375 (514)
Q Consensus 297 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~ 375 (514)
.+++++.|++-.+||++++..+ ..+.+|....+.+.-+|..+++++.+. .+.++||++..-..
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v----------------~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~s 349 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVV----------------NILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQS 349 (481)
T ss_pred eeeeeeccccceeeeeccCcee----------------ccccCcchhccccccCCcceEEEEeccCceeEeccchhhcce
Confidence 9999999999999999999873 336778889999999999999999764 99999999864556
Q ss_pred eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCc
Q 010256 376 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS 455 (514)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 455 (514)
+..+++|... |+++.|..|.+ +++|++|.+|+|||+++....+.++.. .++++.++.+..++.
T Consensus 350 V~VFQGHtdt---------------VTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~i 412 (481)
T KOG0300|consen 350 VAVFQGHTDT---------------VTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPI 412 (481)
T ss_pred eeeecccccc---------------eeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCce
Confidence 7888999876 44889987655 789999999999999987655555543 467889999999999
Q ss_pred eeecCCCCeEEE--eeCCCCCccccCCc-ccccccceEEEEEcCC---CCEEEEEecCcEEEEe
Q 010256 456 RPLGSLSGVVRR--VKGADNSALDANGN-AFDFSMKLLHLAWHPS---ENSIACAASNSLYMYY 513 (514)
Q Consensus 456 l~s~s~d~~v~i--~~~~~~~~~~~~~~-~~~~~~~v~~~~~spd---~~~l~~~~~~~~~i~~ 513 (514)
||.--.++.||+ ++|.++. .+... ..+|...|.+++|..+ -+++.+|-+..++-|.
T Consensus 413 IAiPhDNRqvRlfDlnG~Rla--RlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 413 IAIPHDNRQVRLFDLNGNRLA--RLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred EEeccCCceEEEEecCCCccc--cCCcccccccceeeeeeeccccCcccccccccccceeeeeE
Confidence 999999999999 5666665 23322 3368999999999765 4566677788777775
No 123
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=4.1e-26 Score=194.93 Aligned_cols=274 Identities=21% Similarity=0.296 Sum_probs=205.1
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|..+.|.+ +...|++++.|..|++|++...+....
T Consensus 176 gev~~v~~l~--~sdtlatgg~Dr~Ik~W~v~~~k~~~~----------------------------------------- 212 (459)
T KOG0288|consen 176 GEVHDVEFLR--NSDTLATGGSDRIIKLWNVLGEKSELI----------------------------------------- 212 (459)
T ss_pred cccceeEEcc--Ccchhhhcchhhhhhhhhcccchhhhh-----------------------------------------
Confidence 7899999954 434899999999999999876541110
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
..+.+..+.|+++.|.++++.++++ .|+.+++|++...+..
T Consensus 213 ----------------------------------~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~---- 254 (459)
T KOG0288|consen 213 ----------------------------------STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLR---- 254 (459)
T ss_pred ----------------------------------hhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhh----
Confidence 0024555789999999999998888 9999999999855443
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.++.+|.+.|+++.|.... ..+++|+.|.+|++||+....+. +++-.. +.+..|..+
T Consensus 255 ----~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~----kt~l~~-------------S~cnDI~~~- 311 (459)
T KOG0288|consen 255 ----HTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCS----KTVLPG-------------SQCNDIVCS- 311 (459)
T ss_pred ----hhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhhee----cccccc-------------ccccceEec-
Confidence 2788999999999999887 56999999999999999886543 211111 245555555
Q ss_pred CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
...+++|. |++|++||.+. ..+......+.. |+++..+++|..|.+++.|..+.+.|+.+.
T Consensus 312 -~~~~~SgH~DkkvRfwD~Rs-~~~~~sv~~gg~----------------vtSl~ls~~g~~lLsssRDdtl~viDlRt~ 373 (459)
T KOG0288|consen 312 -ISDVISGHFDKKVRFWDIRS-ADKTRSVPLGGR----------------VTSLDLSMDGLELLSSSRDDTLKVIDLRTK 373 (459)
T ss_pred -ceeeeecccccceEEEeccC-CceeeEeecCcc----------------eeeEeeccCCeEEeeecCCCceeeeecccc
Confidence 45667775 58999999997 777777776653 459999999999999999999999999876
Q ss_pred ceeeeeecCC----CcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccc-ccc-cceEEEEEcCCCCEEEEE
Q 010256 431 SAESTTLEAS----KNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF-DFS-MKLLHLAWHPSENSIACA 504 (514)
Q Consensus 431 ~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~-~~~-~~v~~~~~spd~~~l~~~ 504 (514)
....++... ....+.+.|||++.|+|+||.||.|+| |......+....- .+. ..|++++|+|.|..|+.+
T Consensus 374 -eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~i---W~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 374 -EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYI---WSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred -cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEE---EEccCceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 333444421 234789999999999999999999999 2222211111111 122 279999999999999988
Q ss_pred e-cCcEEEE
Q 010256 505 A-SNSLYMY 512 (514)
Q Consensus 505 ~-~~~~~i~ 512 (514)
+ ...+.+|
T Consensus 450 dk~~~v~lW 458 (459)
T KOG0288|consen 450 DKQKAVTLW 458 (459)
T ss_pred cCCcceEec
Confidence 7 5556666
No 124
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=8.1e-25 Score=189.68 Aligned_cols=268 Identities=16% Similarity=0.239 Sum_probs=187.7
Q ss_pred ccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeecc
Q 010256 102 EFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA 181 (514)
Q Consensus 102 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 181 (514)
.+.....+.+++.|+.+++.|... .++++.+..+.|.|||...-.-...
T Consensus 114 ~v~i~~~i~h~gEVnRaRymPQnp-~iVAt~t~~~dv~Vfd~tk~~s~~~------------------------------ 162 (422)
T KOG0264|consen 114 KVEISQKINHDGEVNRARYMPQNP-NIVATKTSSGDVYVFDYTKHPSKPK------------------------------ 162 (422)
T ss_pred ceEEEEeccCCccchhhhhCCCCC-cEEEecCCCCCEEEEEeccCCCccc------------------------------
Confidence 333444455568899999988544 5788889999999999865321110
Q ss_pred CCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC-CEEEEe-cCCeEEEE
Q 010256 182 NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLW 259 (514)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iw 259 (514)
.++.....++ +.+|...-.+++|++.. -.|+++ +|++|.+|
T Consensus 163 -----------------~~~~~~Pdl~--------------------L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lw 205 (422)
T KOG0264|consen 163 -----------------ASGECRPDLR--------------------LKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLW 205 (422)
T ss_pred -----------------ccccCCCceE--------------------EEeecccccccccccccceeEeeccCCCcEEEE
Confidence 1111111111 36777777789999863 356666 99999999
Q ss_pred eccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeec
Q 010256 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (514)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (514)
|+......-..+ .....+.+|...|..++|+|....+|++++.|+.+.|||+|++.. +. .....+
T Consensus 206 di~~~~~~~~~~-~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~--~~------------~~~~~a 270 (422)
T KOG0264|consen 206 DINAESKEDKVV-DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS--KP------------SHSVKA 270 (422)
T ss_pred eccccccCCccc-cceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC--CC------------cccccc
Confidence 998654421111 111356889999999999998878999999999999999997411 11 123456
Q ss_pred cccceeEEEEecCCC-EEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC-CEEEEE
Q 010256 340 IIASISDIKFARNGR-HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATG 416 (514)
Q Consensus 340 ~~~~i~~~~~s~~g~-~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~ 416 (514)
|.+.|.+++|+|-+. .||+|+ |++|++||+++-.+++.++.+|... |+.+.|+|.. ..||++
T Consensus 271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de---------------v~~V~WSPh~etvLASS 335 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE---------------VFQVEWSPHNETVLASS 335 (422)
T ss_pred cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc---------------eEEEEeCCCCCceeEec
Confidence 779999999999554 555665 6999999999878899999999876 4599999965 578899
Q ss_pred eCCCcEEEEecCCCceee-------------eeecCCCcceeEEEECCCCCc-eeecCCCCeEEE
Q 010256 417 SYSNLFRVFGCSEGSAES-------------TTLEASKNPMRRQVQTPSRPS-RPLGSLSGVVRR 467 (514)
Q Consensus 417 ~~dg~i~iwd~~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~-l~s~s~d~~v~i 467 (514)
+.|+++.|||+..-.... .+-.||+..|..+.|+|..++ |+|.++|+.+.|
T Consensus 336 g~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqI 400 (422)
T KOG0264|consen 336 GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQI 400 (422)
T ss_pred ccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEE
Confidence 999999999997532221 223356666666666666554 455556666665
No 125
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.5e-24 Score=176.95 Aligned_cols=289 Identities=21% Similarity=0.304 Sum_probs=199.6
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
.|.. -.|+.||+.|.+||+|+.||.|.|||+.+.. ..+.+.+|-
T Consensus 22 d~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-----------------------iar~lsaH~------------ 65 (405)
T KOG1273|consen 22 DNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-----------------------IARMLSAHV------------ 65 (405)
T ss_pred cCCc-cceEEeccCcceeeeeccCCcEEEEEccccc-----------------------hhhhhhccc------------
Confidence 3344 7899999999999999999999999998765 335678888
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
.+|.+++| +++|+.|++++.|..|++||+..|.+.....+.
T Consensus 66 ~pi~sl~W--S~dgr~LltsS~D~si~lwDl~~gs~l~rirf~------------------------------------- 106 (405)
T KOG1273|consen 66 RPITSLCW--SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD------------------------------------- 106 (405)
T ss_pred cceeEEEe--cCCCCEeeeecCCceeEEEeccCCCceeEEEcc-------------------------------------
Confidence 88999999 789999999999999999999988754443332
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC--CEEEEecCCeEEEEeccCCCceeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISADDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~d~~i~iwd~~~~~~~~~~ 270 (514)
.+|+...|+|.. +.+++-.+..-.+-++..+.. ..
T Consensus 107 -----------------------------------------spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~~ 143 (405)
T KOG1273|consen 107 -----------------------------------------SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--SV 143 (405)
T ss_pred -----------------------------------------CccceeeeccccCCeEEEEEecCCcEEEEecCCce--ee
Confidence 456667777643 223332333344444442221 11
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
+...+ -........+..|.+.| +++++|...|.+.++|..+.+++ ..++... ...|..+.++
T Consensus 144 Lp~d~--d~dln~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~v----as~rits-----------~~~IK~I~~s 205 (405)
T KOG1273|consen 144 LPKDD--DGDLNSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLECV----ASFRITS-----------VQAIKQIIVS 205 (405)
T ss_pred ccCCC--ccccccccccccccCCC-CEEEEecCcceEEEEecchheee----eeeeech-----------heeeeEEEEe
Confidence 11000 00012222344688988 89999999999999999987663 2222211 1468999999
Q ss_pred cCCCEEEEE-eCCeEEEEEccC---CCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC-CCcEEEE
Q 010256 351 RNGRHILSR-DYMTLKLWDINM---DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVF 425 (514)
Q Consensus 351 ~~g~~l~~~-~~~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iw 425 (514)
..|++|+.. +|..||.|+++. .++-...-..|. ...-+....++ +++|+.+|.|++.++. -..++||
T Consensus 206 ~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K-~qDvVNk~~Wk-------~ccfs~dgeYv~a~s~~aHaLYIW 277 (405)
T KOG1273|consen 206 RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHK-LQDVVNKLQWK-------KCCFSGDGEYVCAGSARAHALYIW 277 (405)
T ss_pred ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHH-HHHHHhhhhhh-------heeecCCccEEEeccccceeEEEE
Confidence 999999985 679999999862 111000000000 00011111222 7999999999987774 4579999
Q ss_pred ecCCCceeeeeecCCC-cceeEEEECCCCCceeecCCCCeEEE
Q 010256 426 GCSEGSAESTTLEASK-NPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 426 d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
....| .+.+.|+|.. ...-.+.|+|-...+++. ..|.|++
T Consensus 278 E~~~G-sLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~i 318 (405)
T KOG1273|consen 278 EKSIG-SLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYI 318 (405)
T ss_pred ecCCc-ceeeeecCCchhheeecccccceeeeeec-cCCceEE
Confidence 99887 6668999888 667788999999999988 7888888
No 126
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=4e-25 Score=193.54 Aligned_cols=286 Identities=11% Similarity=0.122 Sum_probs=212.8
Q ss_pred cccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEE-EEEeeccCCCccccCCcceecccccCCceeeccCC
Q 010256 105 YLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (514)
Q Consensus 105 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 183 (514)
.+.++.|.+-|.++.. +...+++++|+. |.|+|||+....- ..+..+. +...+....+....|||
T Consensus 412 q~~tL~HGEvVcAvtI--S~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLd-----------cl~rdnyiRSckL~pdg 477 (705)
T KOG0639|consen 412 QINTLAHGEVVCAVTI--SNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLD-----------CLNRDNYIRSCKLLPDG 477 (705)
T ss_pred hhhhhccCcEEEEEEe--cCCcceeEecCC-CeEEEeeccCCCCCCcccccc-----------ccCcccceeeeEecCCC
Confidence 3556677788888888 455567888775 8999999976421 1111111 11111222377889999
Q ss_pred CccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEecc
Q 010256 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLE 262 (514)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~ 262 (514)
+.| ++|++-.++.||| +....... +.. +........+++.+||.+..+++ .||.|.|||+.
T Consensus 478 rtL------------ivGGeastlsiWD-LAapTpri----kae-ltssapaCyALa~spDakvcFsccsdGnI~vwDLh 539 (705)
T KOG0639|consen 478 RTL------------IVGGEASTLSIWD-LAAPTPRI----KAE-LTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH 539 (705)
T ss_pred ceE------------Eeccccceeeeee-ccCCCcch----hhh-cCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc
Confidence 999 9999999999999 44322211 111 13333567789999999999988 99999999998
Q ss_pred CCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccc
Q 010256 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
+.. .++ .+++|.+.+.||..+++| ..|-+|+-|.+||.||++.+....++ . ..+
T Consensus 540 nq~-~Vr-------qfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlqqh--d---------------F~S 593 (705)
T KOG0639|consen 540 NQT-LVR-------QFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQH--D---------------FSS 593 (705)
T ss_pred cce-eee-------cccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhhhh--h---------------hhh
Confidence 443 332 689999999999999999 89999999999999999998764321 1 125
Q ss_pred ceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCc
Q 010256 343 SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 421 (514)
.|.++..+|++.+|+.|-. +.+.|-... +.....+..|+.. |.++.|.+-|+++++.+.|+.
T Consensus 594 QIfSLg~cP~~dWlavGMens~vevlh~s--kp~kyqlhlheSc---------------VLSlKFa~cGkwfvStGkDnl 656 (705)
T KOG0639|consen 594 QIFSLGYCPTGDWLAVGMENSNVEVLHTS--KPEKYQLHLHESC---------------VLSLKFAYCGKWFVSTGKDNL 656 (705)
T ss_pred hheecccCCCccceeeecccCcEEEEecC--CccceeecccccE---------------EEEEEecccCceeeecCchhh
Confidence 7999999999999999855 788887765 3444555555543 459999999999999999999
Q ss_pred EEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 422 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+..|....|..+.+ ..-.++|.+..++.|.+|+++||.|....+
T Consensus 657 LnawrtPyGasiFq--skE~SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 657 LNAWRTPYGASIFQ--SKESSSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred hhhccCccccceee--ccccCcceeeeeccCceEEEecCCCcceEE
Confidence 99999988754322 233578999999999999999999876555
No 127
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-23 Score=173.20 Aligned_cols=270 Identities=12% Similarity=0.217 Sum_probs=204.8
Q ss_pred eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCcE
Q 010256 49 HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSAL 128 (514)
Q Consensus 49 ~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~ 128 (514)
.+++|+....|.-+++.-.+. +..-+..|.+..+-.++.|. .+|++++. ++.+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~-----------~~~~s~~~~l~~lF~~~aH~------------~sitavAV----s~~~ 55 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPK-----------GCTDSVKPTLKPLFAFSAHA------------GSITALAV----SGPY 55 (362)
T ss_pred eEEEeeeeeEEEEEEeccCcc-----------ccccccceeeeccccccccc------------cceeEEEe----ccee
Confidence 467888888777777653321 11112234445556678888 89999998 3569
Q ss_pred EEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEE
Q 010256 129 YLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLR 208 (514)
Q Consensus 129 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 208 (514)
+++|+.|-+|+|||++.......
T Consensus 56 ~aSGssDetI~IYDm~k~~qlg~--------------------------------------------------------- 78 (362)
T KOG0294|consen 56 VASGSSDETIHIYDMRKRKQLGI--------------------------------------------------------- 78 (362)
T ss_pred EeccCCCCcEEEEeccchhhhcc---------------------------------------------------------
Confidence 99999999999999987541110
Q ss_pred eceeeccccccccccccccccccCccCeEEEEECCCCC--EEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCce
Q 010256 209 LPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE--TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 285 (514)
Q Consensus 209 i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 285 (514)
+..|.+.|+++.|.+.-. .|++| +||.|.+|+...-... .++.+|.+.|
T Consensus 79 --------------------ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~--------~slK~H~~~V 130 (362)
T KOG0294|consen 79 --------------------LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELL--------KSLKAHKGQV 130 (362)
T ss_pred --------------------eeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEe--------eeeccccccc
Confidence 246778999999998754 78888 9999999998754322 2678899999
Q ss_pred EEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEE
Q 010256 286 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLK 365 (514)
Q Consensus 286 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~ 365 (514)
+.++.+|.+ ++-++.+.|+.+++||+-.|+.. ...+.. ..-+.+.|+|.|.+++.+....|-
T Consensus 131 t~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a----~v~~L~-------------~~at~v~w~~~Gd~F~v~~~~~i~ 192 (362)
T KOG0294|consen 131 TDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVA----FVLNLK-------------NKATLVSWSPQGDHFVVSGRNKID 192 (362)
T ss_pred ceeEecCCC-ceEEEEcCCceeeeehhhcCccc----eeeccC-------------CcceeeEEcCCCCEEEEEeccEEE
Confidence 999999999 89999999999999999887652 222222 223449999999999888777999
Q ss_pred EEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCccee
Q 010256 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR 445 (514)
Q Consensus 366 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 445 (514)
||.+.+ ......+..... +.++.|- ++.+|++|.+|+.|.+||..+. .....+.+|..+|.
T Consensus 193 i~q~d~-A~v~~~i~~~~r----------------~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK 253 (362)
T KOG0294|consen 193 IYQLDN-ASVFREIENPKR----------------ILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVK 253 (362)
T ss_pred EEeccc-HhHhhhhhcccc----------------ceeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecchhhee
Confidence 999986 555544433311 1145554 6778999999999999999875 44588999999999
Q ss_pred EEEE--CCCCCceeecCCCCeEEE
Q 010256 446 RQVQ--TPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 446 ~~~~--~~~~~~l~s~s~d~~v~i 467 (514)
.+.+ .|++.+|+++|.||.|++
T Consensus 254 ~i~~~~~~~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 254 DIASYTNPEHEYLVTASSDGFIKV 277 (362)
T ss_pred eeEEEecCCceEEEEeccCceEEE
Confidence 9985 588999999999999999
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.5e-23 Score=171.59 Aligned_cols=267 Identities=15% Similarity=0.211 Sum_probs=194.0
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|.+|.|.| .+..|++++.||++++|++....+..
T Consensus 14 d~IS~v~f~~--~~~~LLvssWDgslrlYdv~~~~l~~------------------------------------------ 49 (323)
T KOG1036|consen 14 DGISSVKFSP--SSSDLLVSSWDGSLRLYDVPANSLKL------------------------------------------ 49 (323)
T ss_pred hceeeEEEcC--cCCcEEEEeccCcEEEEeccchhhhh------------------------------------------
Confidence 7899999964 44588888999999999987653111
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
...|..++.+.+|.++. .+++| -||.|+.+|+.++...
T Consensus 50 ------------------------------------~~~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~---- 88 (323)
T KOG1036|consen 50 ------------------------------------KFKHGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNED---- 88 (323)
T ss_pred ------------------------------------heecCCceeeeeccCCc-eEEEeccCceEEEEEecCCcce----
Confidence 13566889999998855 45555 9999999999977654
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.+..|..++++|.+++.. ..+++|+.|++|++||.+.... .-.++.. ..|.++..+
T Consensus 89 -----~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~----~~~~d~~-------------kkVy~~~v~- 144 (323)
T KOG1036|consen 89 -----QIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVV----VGTFDQG-------------KKVYCMDVS- 144 (323)
T ss_pred -----eeccCCCceEEEEeeccC-CeEEEcccCccEEEEecccccc----ccccccC-------------ceEEEEecc-
Confidence 456799999999999876 7899999999999999997332 2222222 368777766
Q ss_pred CCCEEEE-EeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 352 NGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 352 ~g~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
|..|+. +.+..+.+||+++-..+.+... ...... +-++++-|++.-.+.++-||+|.+=.+...
T Consensus 145 -g~~LvVg~~~r~v~iyDLRn~~~~~q~re--S~lkyq------------tR~v~~~pn~eGy~~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 145 -GNRLVVGTSDRKVLIYDLRNLDEPFQRRE--SSLKYQ------------TRCVALVPNGEGYVVSSIEGRVAVEYFDDS 209 (323)
T ss_pred -CCEEEEeecCceEEEEEcccccchhhhcc--ccceeE------------EEEEEEecCCCceEEEeecceEEEEccCCc
Confidence 556666 5669999999997333332111 111111 228889998888999999999987555443
Q ss_pred ---ceeeeeecCCC---------cceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCC
Q 010256 431 ---SAESTTLEASK---------NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSE 498 (514)
Q Consensus 431 ---~~~~~~~~~~~---------~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~ 498 (514)
+...-.++.|. .||++++|+|-.+.+|||+.||.|.+ |++....-......+...|.+++|+.||
T Consensus 210 ~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~---Wd~~~rKrl~q~~~~~~SI~slsfs~dG 286 (323)
T KOG1036|consen 210 EEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNI---WDLFNRKRLKQLAKYETSISSLSFSMDG 286 (323)
T ss_pred hHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEE---ccCcchhhhhhccCCCCceEEEEeccCC
Confidence 11224555554 47999999999999999999999999 3333222222233456789999999999
Q ss_pred CEEEEEec
Q 010256 499 NSIACAAS 506 (514)
Q Consensus 499 ~~l~~~~~ 506 (514)
..||+|++
T Consensus 287 ~~LAia~s 294 (323)
T KOG1036|consen 287 SLLAIASS 294 (323)
T ss_pred CeEEEEec
Confidence 99999873
No 129
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.5e-25 Score=200.99 Aligned_cols=291 Identities=16% Similarity=0.209 Sum_probs=214.6
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
....++|+.+++-..++.++.. .++||.+...... +.... .++... ...-.
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~-----------------~~~~~--~~k~kq---------n~~~S 89 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFS-----------------EKCNH--RFKTKQ---------NKFYS 89 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCC-----------------cceee--eccccc---------ceeee
Confidence 4667888888988888887654 6888887644321 11111 111100 00134
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
+..|.|. +-..++|++++..|.|.+||+...-. .+
T Consensus 90 ~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~r----------------------------------nk---------- 124 (839)
T KOG0269|consen 90 AADVKWG-QLYSNLIATCSTNGVISVWDLNKSIR----------------------------------NK---------- 124 (839)
T ss_pred hhhcccc-cchhhhheeecCCCcEEEEecCcccc----------------------------------ch----------
Confidence 6778887 55667999999999999999864210 00
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCceeeeec
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 272 (514)
.. ..+..|...++++.|++. ..+|++| .||+|++||++..+...
T Consensus 125 -----------------------------~l-~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~---- 170 (839)
T KOG0269|consen 125 -----------------------------LL-TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS---- 170 (839)
T ss_pred -----------------------------hh-hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc----
Confidence 00 013688899999999986 5677888 99999999999665442
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 352 (514)
++.+....|+.|+|+|..++.|+++...|.+++||+|....+. ..+.+|.++|.++.|+|+
T Consensus 171 ----t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~---------------~k~~AH~GpV~c~nwhPn 231 (839)
T KOG0269|consen 171 ----TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE---------------KKLTAHNGPVLCLNWHPN 231 (839)
T ss_pred ----cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH---------------HHhhcccCceEEEeecCC
Confidence 4556788899999999877999999999999999999876541 226678899999999999
Q ss_pred CCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCE-EEEEe--CCCcEEEEecC
Q 010256 353 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGS--YSNLFRVFGCS 428 (514)
Q Consensus 353 g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~--~dg~i~iwd~~ 428 (514)
+.+||+|+ |++|+|||+.. .+.......+. +..+..+.|-|+..+ ||+++ .|-.|+|||+.
T Consensus 232 r~~lATGGRDK~vkiWd~t~-~~~~~~~tInT--------------iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 232 REWLATGGRDKMVKIWDMTD-SRAKPKHTINT--------------IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred CceeeecCCCccEEEEeccC-CCccceeEEee--------------cceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 99999976 59999999985 33322222222 122448999998765 66665 67899999998
Q ss_pred CCceeeeeecCCCcceeEEEEC-CCCCceeecCCCCeEEE
Q 010256 429 EGSAESTTLEASKNPMRRQVQT-PSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~s~d~~v~i 467 (514)
...-...++..|+..++.++|. .|...+.+++.|++|..
T Consensus 297 RPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 297 RPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred cccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 7655558999999999999996 46678999999999887
No 130
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=7.4e-24 Score=192.82 Aligned_cols=281 Identities=12% Similarity=0.156 Sum_probs=218.1
Q ss_pred ccceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcce
Q 010256 88 PEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI 167 (514)
Q Consensus 88 ~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v 167 (514)
|.|+..+++.+|. ..|..++.. ++..++++++||++++|+-..++......
T Consensus 2 ~~Y~ls~~l~gH~------------~DVr~v~~~---~~~~i~s~sRd~t~~vw~~~~~~~l~~~~-------------- 52 (745)
T KOG0301|consen 2 PQYKLSHELEGHK------------SDVRAVAVT---DGVCIISGSRDGTVKVWAKKGKQYLETHA-------------- 52 (745)
T ss_pred CcceeEEEeccCc------------cchheeEec---CCeEEeecCCCCceeeeeccCccccccee--------------
Confidence 4677888999998 778888873 34579999999999999987665322111
Q ss_pred ecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEE-EEECC-CC
Q 010256 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINS-ISNNS-DG 245 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~-~~ 245 (514)
..+|.+.|.. +++.+ ++
T Consensus 53 -------------------------------------------------------------~~~~~g~i~~~i~y~e~~~ 71 (745)
T KOG0301|consen 53 -------------------------------------------------------------FEGPKGFIANSICYAESDK 71 (745)
T ss_pred -------------------------------------------------------------cccCcceeeccceeccccC
Confidence 1334444544 66664 44
Q ss_pred CEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccc
Q 010256 246 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (514)
Q Consensus 246 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 324 (514)
-.+++| .|.+|.+|......+.. .+.+|...|.++....++ . +++||.|.++++|-...-. .
T Consensus 72 ~~l~~g~~D~~i~v~~~~~~~P~~--------~LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~l~------~- 134 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQAEPLY--------TLKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGELV------Y- 134 (745)
T ss_pred cceEeecccceEEEEecCCCCchh--------hhhccccceeeeecCCcC-c-eEecccccceEEecchhhh------c-
Confidence 457777 99999999998665543 688999999999988887 4 9999999999999875422 1
Q ss_pred eeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeE
Q 010256 325 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (514)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (514)
.+.+|...|++++.-|++.++-.+.|.+|++|.- ++.+.++.+|...+. .+
T Consensus 135 -----------~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VR---------------gL 185 (745)
T KOG0301|consen 135 -----------SLQGHTASVWAVASLPENTYVTGSADKTIKLWKG---GTLLKTFSGHTDCVR---------------GL 185 (745)
T ss_pred -----------ccCCcchheeeeeecCCCcEEeccCcceeeeccC---Cchhhhhccchhhee---------------ee
Confidence 1567779999999999984444456799999985 678899999987654 78
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccc
Q 010256 405 CLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD 484 (514)
Q Consensus 405 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~ 484 (514)
++-+++. +++++.||.|++|++. ++. +..+.+|+.-++++...++...++++++|+++|+.+..... ..+.
T Consensus 186 ~vl~~~~-flScsNDg~Ir~w~~~-ge~-l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~------q~I~ 256 (745)
T KOG0301|consen 186 AVLDDSH-FLSCSNDGSIRLWDLD-GEV-LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECV------QVIT 256 (745)
T ss_pred EEecCCC-eEeecCCceEEEEecc-Cce-eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceE------EEEe
Confidence 8877655 6689999999999994 434 47889999999999999999999999999999995444222 2222
Q ss_pred c-ccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 485 F-SMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 485 ~-~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
+ .-.|.++.+-++|..++.++++.++||.
T Consensus 257 lPttsiWsa~~L~NgDIvvg~SDG~VrVfT 286 (745)
T KOG0301|consen 257 LPTTSIWSAKVLLNGDIVVGGSDGRVRVFT 286 (745)
T ss_pred cCccceEEEEEeeCCCEEEeccCceEEEEE
Confidence 3 3488999999999999899999999996
No 131
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=2.1e-24 Score=189.07 Aligned_cols=287 Identities=15% Similarity=0.237 Sum_probs=215.2
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
...|..-|.++.+|...+++.||+. |.|+|||+...... .|.. .+..- .
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k----------------~Pvs----qLdcl----------~ 463 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK----------------SPVS----QLDCL----------N 463 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC----------------Cccc----ccccc----------C
Confidence 4579999999999999999999875 56999998654321 1111 11110 0
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
-+.-|.+... .+||+.|++|+.-.++.|||+.........++. +....|..++.+||.+..
T Consensus 464 rdnyiRSckL--~pdgrtLivGGeastlsiWDLAapTprikaelt-------------ssapaCyALa~spDakvc---- 524 (705)
T KOG0639|consen 464 RDNYIRSCKL--LPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT-------------SSAPACYALAISPDAKVC---- 524 (705)
T ss_pred cccceeeeEe--cCCCceEEeccccceeeeeeccCCCcchhhhcC-------------CcchhhhhhhcCCcccee----
Confidence 1144777777 578889999999999999999865433222222 112345588999999988
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
++++.||.|.||| +.+. ...+. +.+|.+.+.||.+++||..|-+| -|.+||.||++++.+..+
T Consensus 525 --------FsccsdGnI~vwD-Lhnq------~~Vrq-fqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq 588 (705)
T KOG0639|consen 525 --------FSCCSDGNIAVWD-LHNQ------TLVRQ-FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ 588 (705)
T ss_pred --------eeeccCCcEEEEE-cccc------eeeec-ccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh
Confidence 9999999999999 4432 23344 38999999999999999999999 899999999997765532
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
......|.++-+.|++ .+++.|-.++.+.+........ +. +.-|.+-|.++.|
T Consensus 589 ---------hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~k-----yq------------lhlheScVLSlKF 641 (705)
T KOG0639|consen 589 ---------HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEK-----YQ------------LHLHESCVLSLKF 641 (705)
T ss_pred ---------hhhhhhheecccCCCc-cceeeecccCcEEEEecCCccc-----ee------------ecccccEEEEEEe
Confidence 2346789999999999 8999999999988877654332 22 3335588999999
Q ss_pred ecCCCEEEE-EeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 350 ARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 350 s~~g~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
.+.|+++++ |-|.-+..|.... +..+...+.. ..|+++.+|.|.+||+||+.|....||.+
T Consensus 642 a~cGkwfvStGkDnlLnawrtPy-GasiFqskE~----------------SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 642 AYCGKWFVSTGKDNLLNAWRTPY-GASIFQSKES----------------SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccCceeeecCchhhhhhccCcc-ccceeecccc----------------CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999999998 5568999999876 5444333222 22568999999999999999998888865
No 132
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.4e-23 Score=170.58 Aligned_cols=278 Identities=14% Similarity=0.206 Sum_probs=194.9
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
+.+|.+-|+|+.|.+.|+++||++.|++|+|||..... ..+......+.|+
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s-------------------~~W~~Ts~Wrah~---------- 59 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS-------------------GTWSCTSSWRAHD---------- 59 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC-------------------CceEEeeeEEecC----------
Confidence 56899999999999999999999999999999974433 2445667788898
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCcc-------EEEEEeeccCCCccccCCcceecccccCCceeeccCC
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-------KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 183 (514)
+.|..|.|.+..=|+.+++++.|++++||.-... +......+... .+.|. .+.|.|.-
T Consensus 60 --~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Ds------rssV~-------DV~FaP~h 124 (361)
T KOG2445|consen 60 --GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDS------RSSVT-------DVKFAPKH 124 (361)
T ss_pred --CcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecC------Cccee-------EEEecchh
Confidence 9999999998788999999999999999976321 12222222211 23333 77888765
Q ss_pred CccccccCCCCCCcccCCCCCCcEEeceeecccccc-----ccccccccccccCccCeEEEEECCC---CCEEEEecC--
Q 010256 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN-----LVAGCRRIYAHAHDYHINSISNNSD---GETFISADD-- 253 (514)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~d-- 253 (514)
.-+. +++++.||.+|||+.+.-.+.. ...+........+..+..|+.|+|. .++|+.|.|
T Consensus 125 lGLk----------lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~ 194 (361)
T KOG2445|consen 125 LGLK----------LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDED 194 (361)
T ss_pred cceE----------EEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccC
Confidence 4432 2999999999999832222211 0111111112356678889999985 678888843
Q ss_pred ----CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCC---cEEEEEecCCeEEEEEcCCCcccc------c
Q 010256 254 ----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC---NMLAYSSSKGSIRLIDMRQSALCD------T 320 (514)
Q Consensus 254 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~---~~l~~~~~dg~i~~wd~~~~~~~~------~ 320 (514)
+.++||........... ..++.+|..+|+.++|.|+-+ .+||+++.|| |+||.++...... .
T Consensus 195 a~~~~~~~Iye~~e~~rKw~k----va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~ 269 (361)
T KOG2445|consen 195 APHLNKVKIYEYNENGRKWLK----VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLA 269 (361)
T ss_pred CccccceEEEEecCCcceeee----ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccC
Confidence 48999987755432221 136778999999999999743 5899999999 9999997532110 0
Q ss_pred --cccceeccCCCCccceeeccccceeEEEEecCCCEEEE-EeCCeEEEEEccC
Q 010256 321 --HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINM 371 (514)
Q Consensus 321 --~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~i~iwd~~~ 371 (514)
....++. .....+.+|.+.|..+.|+-.|..|++ |+||.|++|....
T Consensus 270 ~~~~~~l~v----~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 270 PDLMTDLPV----EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred CCCccccce----EEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 0000111 112346789999999999999999998 4569999998764
No 133
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.4e-23 Score=179.70 Aligned_cols=284 Identities=15% Similarity=0.276 Sum_probs=206.6
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|++|.|+|.. ..+++++.|+.++||.+....-..+...
T Consensus 214 ~~I~sv~FHp~~--plllvaG~d~~lrifqvDGk~N~~lqS~-------------------------------------- 253 (514)
T KOG2055|consen 214 GGITSVQFHPTA--PLLLVAGLDGTLRIFQVDGKVNPKLQSI-------------------------------------- 253 (514)
T ss_pred CCceEEEecCCC--ceEEEecCCCcEEEEEecCccChhheee--------------------------------------
Confidence 789999997654 4899999999999998865431111111
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCC-EEEEe-cCCeEEEEeccCCCceeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
.-...+|.+.+|.|+|. .++++ ....++.||+.+.+.. .+
T Consensus 254 -------------------------------------~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~-k~ 295 (514)
T KOG2055|consen 254 -------------------------------------HLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT-KL 295 (514)
T ss_pred -------------------------------------eeccCccceeeecCCCceEEEecccceEEEEeeccccccc-cc
Confidence 11236788999999998 77777 8899999999866532 11
Q ss_pred eccCCCccccc-CCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 271 VDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 271 ~~~~~~~~~~~-~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
+ ...++ ...+.....+|++ ++|+..+..|.|.+.-..+++. +.+++.. +.|..++|
T Consensus 296 ---~--~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~el----i~s~Kie-------------G~v~~~~f 352 (514)
T KOG2055|consen 296 ---K--PPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKEL----ITSFKIE-------------GVVSDFTF 352 (514)
T ss_pred ---c--CCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhh----hheeeec-------------cEEeeEEE
Confidence 1 22222 3456788899999 8999999999999999888876 3444433 67999999
Q ss_pred ecCCCEEEE-EeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+.+++.|++ |++|.|.+||++. ..++.++......- -+++|.+++|.|||+|+..|.|.|||.+
T Consensus 353 sSdsk~l~~~~~~GeV~v~nl~~-~~~~~rf~D~G~v~--------------gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 353 SSDSKELLASGGTGEVYVWNLRQ-NSCLHRFVDDGSVH--------------GTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred ecCCcEEEEEcCCceEEEEecCC-cceEEEEeecCccc--------------eeeeeecCCCceEEeccCcceEEEeccc
Confidence 999998877 4669999999997 67787776654431 1378999999999999999999999965
Q ss_pred CC-----ceeeeeecCCCcceeEEEECCCCCceeecCC--CCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEE
Q 010256 429 EG-----SAESTTLEASKNPMRRQVQTPSRPSRPLGSL--SGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSI 501 (514)
Q Consensus 429 ~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~--d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l 501 (514)
+. .+....+..-...|+.+.|+|+.++||.+|. +..+|++.-.....+.--+.....-+.|++++|||.+-+|
T Consensus 418 s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~l 497 (514)
T KOG2055|consen 418 SCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYL 497 (514)
T ss_pred hhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceE
Confidence 42 1223556666788999999999999988875 5677871111000000001112346789999999999999
Q ss_pred EEEe-cCcEEEE
Q 010256 502 ACAA-SNSLYMY 512 (514)
Q Consensus 502 ~~~~-~~~~~i~ 512 (514)
|.|. .+.+.+|
T Consensus 498 AvGNe~grv~l~ 509 (514)
T KOG2055|consen 498 AVGNEAGRVHLF 509 (514)
T ss_pred EeecCCCceeeE
Confidence 9998 4556666
No 134
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.8e-25 Score=201.52 Aligned_cols=246 Identities=18% Similarity=0.292 Sum_probs=189.3
Q ss_pred ceEEEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 37 IISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 37 ~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
.+..|+|+. +.++|||++.+|.|.+||+.... ..+.+..|..|+ ..+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~--------------------rnk~l~~f~EH~------------Rs~ 136 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI--------------------RNKLLTVFNEHE------------RSA 136 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccc--------------------cchhhhHhhhhc------------cce
Confidence 455677875 56899999999999999987421 111335677887 889
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
+++.|++... .+|++|+.||+|++||++..+-...
T Consensus 137 ~~ldfh~tep-~iliSGSQDg~vK~~DlR~~~S~~t-------------------------------------------- 171 (839)
T KOG0269|consen 137 NKLDFHSTEP-NILISGSQDGTVKCWDLRSKKSKST-------------------------------------------- 171 (839)
T ss_pred eeeeeccCCc-cEEEecCCCceEEEEeeeccccccc--------------------------------------------
Confidence 9999987554 5999999999999999987652211
Q ss_pred CcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCceeeeecc
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
..+....|+++.|+|. +..|+++ +.|.+.+||++...+...
T Consensus 172 ---------------------------------~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~---- 214 (839)
T KOG0269|consen 172 ---------------------------------FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK---- 214 (839)
T ss_pred ---------------------------------ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH----
Confidence 1234467889999985 7788888 999999999997766543
Q ss_pred CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 274 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
.+..|.++|.++.|+|++ .+||+|+.|+.|+|||+.+.+... ..+++. ..++..|+|-|..
T Consensus 215 ---k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~--~~tInT-------------iapv~rVkWRP~~ 275 (839)
T KOG0269|consen 215 ---KLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKP--KHTINT-------------IAPVGRVKWRPAR 275 (839)
T ss_pred ---HhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCccc--eeEEee-------------cceeeeeeeccCc
Confidence 578899999999999987 899999999999999998654311 122221 2589999999987
Q ss_pred CEEE-EE---eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC-CCCEEEEEeCCCcEEEEecC
Q 010256 354 RHIL-SR---DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 354 ~~l~-~~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~ 428 (514)
++.+ ++ .|..|+|||++.+.-|..++..|...+. .++|.. |...|.+++.||.|..-..+
T Consensus 276 ~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt---------------~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 276 SYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVT---------------GIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred cchhhhhhccccceEEEEeeccccccceeeeccCcccc---------------ceeccCCCceeeEeecCccHHHHhhhh
Confidence 6554 43 4589999999988889999999987643 788865 45678899999988665554
Q ss_pred CC
Q 010256 429 EG 430 (514)
Q Consensus 429 ~~ 430 (514)
..
T Consensus 341 na 342 (839)
T KOG0269|consen 341 NA 342 (839)
T ss_pred cc
Confidence 43
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7e-23 Score=192.44 Aligned_cols=277 Identities=16% Similarity=0.209 Sum_probs=205.5
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
..|...-+.|+|.|+|++|.+++.||.|++|+....... |+. +.-+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-----------------P~t-----i~~~g----------- 56 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-----------------PET-----IDISG----------- 56 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-----------------Cch-----hhccC-----------
Confidence 478899999999999999999999999999997544211 111 01022
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..|.+++- ++.+|++++.+++|.+|.+.+++...+
T Consensus 57 -~~v~~ia~----~s~~f~~~s~~~tv~~y~fps~~~~~i---------------------------------------- 91 (933)
T KOG1274|consen 57 -ELVSSIAC----YSNHFLTGSEQNTVLRYKFPSGEEDTI---------------------------------------- 91 (933)
T ss_pred -ceeEEEee----cccceEEeeccceEEEeeCCCCCccce----------------------------------------
Confidence 66777776 334899999999999999877642110
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
+...+-++++++|+.+|++++.| +|-.|++-++.+..+..
T Consensus 92 -------------------------------------L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~-- 132 (933)
T KOG1274|consen 92 -------------------------------------LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK-- 132 (933)
T ss_pred -------------------------------------eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe--
Confidence 12223578999999999999999 99999999998666553
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
.+.+|.++|.++.|+|.+ ++||+.+-||.|++||+.++.+........+..+ ......+..++|+
T Consensus 133 ------~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~--------~~~s~i~~~~aW~ 197 (933)
T KOG1274|consen 133 ------VLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE--------FILSRICTRLAWH 197 (933)
T ss_pred ------eecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhcccCCcccc--------ccccceeeeeeec
Confidence 578899999999999999 9999999999999999998876322111111111 0013467889999
Q ss_pred cC-CCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 351 RN-GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 351 ~~-g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
|+ |++++.+.++.|++|+... ......+........ +..+.|+|+|+|||+++.||.|.|||.++
T Consensus 198 Pk~g~la~~~~d~~Vkvy~r~~-we~~f~Lr~~~~ss~-------------~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 198 PKGGTLAVPPVDNTVKVYSRKG-WELQFKLRDKLSSSK-------------FSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCCCeEEeeccCCeEEEEccCC-ceeheeecccccccc-------------eEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 98 5556667889999999986 665555544332211 23799999999999999999999999986
Q ss_pred CceeeeeecCCCcceeEEEECCCCCceeec
Q 010256 430 GSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 430 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
-. .+.....|.+++|.|+..-+-.-
T Consensus 264 ~~-----~~~~~~~Vc~~aw~p~~n~it~~ 288 (933)
T KOG1274|consen 264 HE-----RHEFKRAVCCEAWKPNANAITLI 288 (933)
T ss_pred ch-----hccccceeEEEecCCCCCeeEEE
Confidence 21 13345678899999987755433
No 136
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=4.9e-22 Score=181.82 Aligned_cols=293 Identities=11% Similarity=0.107 Sum_probs=190.6
Q ss_pred CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCC
Q 010256 47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (514)
Q Consensus 47 g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~ 126 (514)
++.+++++.|+.|++||+.+++. ...+..+ ..+..++| ++++
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~-----------------------~~~~~~~-------------~~~~~l~~--~~dg 42 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV-----------------------TRTFPVG-------------QRPRGITL--SKDG 42 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce-----------------------EEEEECC-------------CCCCceEE--CCCC
Confidence 45788999999999999876652 2344444 33677899 5666
Q ss_pred cEE-EEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCC
Q 010256 127 ALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (514)
Q Consensus 127 ~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (514)
+.+ ++++.++.|++||..+++.......... +..+.++|+++.+ ++++..++
T Consensus 43 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~----------------~~~~~~~~~g~~l-----------~~~~~~~~ 95 (300)
T TIGR03866 43 KLLYVCASDSDTIQVIDLATGEVIGTLPSGPD----------------PELFALHPNGKIL-----------YIANEDDN 95 (300)
T ss_pred CEEEEEECCCCeEEEEECCCCcEEEeccCCCC----------------ccEEEECCCCCEE-----------EEEcCCCC
Confidence 666 5667889999999998876543332211 1156889999865 13445688
Q ss_pred cEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cC-CeEEEEeccCCCceeeeeccCCCcccccCC
Q 010256 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-LRINLWNLEISNQSFNIVDVKPANMEDLTE 283 (514)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 283 (514)
.+++|| +.... ....+ .+...+.+++|+|++++++++ .+ ..+.+||.++....... ....
T Consensus 96 ~l~~~d-~~~~~------~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~---------~~~~ 157 (300)
T TIGR03866 96 LVTVID-IETRK------VLAEI--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV---------LVDQ 157 (300)
T ss_pred eEEEEE-CCCCe------EEeEe--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE---------EcCC
Confidence 999999 33211 11111 122346789999999999988 54 45778898754432211 1223
Q ss_pred ceEEEEEecCCCcEE-EEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE--e
Q 010256 284 VITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D 360 (514)
Q Consensus 284 ~i~~v~~~p~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--~ 360 (514)
.+..++|+|++ ..| +++..++.|++||+++++.. ..+..+... ..........++|+|++++++.+ +
T Consensus 158 ~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~----~~~~~~~~~-----~~~~~~~~~~i~~s~dg~~~~~~~~~ 227 (300)
T TIGR03866 158 RPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVI----KKITFEIPG-----VHPEAVQPVGIKLTKDGKTAFVALGP 227 (300)
T ss_pred CccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceee----eeeeecccc-----cccccCCccceEECCCCCEEEEEcCC
Confidence 45779999999 555 55556999999999987653 222111000 00000124568899999986553 3
Q ss_pred CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE-eCCCcEEEEecCCCceeeeeecC
Q 010256 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEA 439 (514)
Q Consensus 361 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~ 439 (514)
++.+.+||+++ ++.+..+.... . +.+++|+|+|++|+++ +.+|.|++||+.+++.. ..++.
T Consensus 228 ~~~i~v~d~~~-~~~~~~~~~~~-~---------------~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~-~~~~~ 289 (300)
T TIGR03866 228 ANRVAVVDAKT-YEVLDYLLVGQ-R---------------VWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI-KSIKV 289 (300)
T ss_pred CCeEEEEECCC-CcEEEEEEeCC-C---------------cceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE-EEEEc
Confidence 47899999986 66554443221 1 2389999999999876 46899999999987543 45554
Q ss_pred CCcceeEEEECC
Q 010256 440 SKNPMRRQVQTP 451 (514)
Q Consensus 440 ~~~~v~~~~~~~ 451 (514)
. ...+.++++|
T Consensus 290 ~-~~~~~~~~~~ 300 (300)
T TIGR03866 290 G-RLPWGVVVRP 300 (300)
T ss_pred c-cccceeEeCC
Confidence 4 3346777654
No 137
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=1.9e-23 Score=197.49 Aligned_cols=265 Identities=15% Similarity=0.236 Sum_probs=211.4
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEE-eeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV-FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..+.+..|. +.++++++.|++|++|+..++..... +..+ .+.+. .+.+..-+..+
T Consensus 209 ~~~~~~q~~----~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH--------~g~V~-------~l~~~~~~~~l----- 264 (537)
T KOG0274|consen 209 HVVLCLQLH----DGFFKSGSDDSTLHLWDLNNGYLILTRLVGH--------FGGVW-------GLAFPSGGDKL----- 264 (537)
T ss_pred chhhhheee----cCeEEecCCCceeEEeecccceEEEeeccCC--------CCCce-------eEEEecCCCEE-----
Confidence 567788883 34899999999999999999886655 5555 34454 66666656665
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
++|+.|.++++|| ... +.|...+ .+|...|.++... ...+++| .|.+|++|+++++... .
T Consensus 265 -------vsgS~D~t~rvWd-~~s------g~C~~~l-~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l-~- 325 (537)
T KOG0274|consen 265 -------VSGSTDKTERVWD-CST------GECTHSL-QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACL-N- 325 (537)
T ss_pred -------EEEecCCcEEeEe-cCC------CcEEEEe-cCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceE-E-
Confidence 9999999999999 333 5566665 7999999888764 4567777 8999999999955443 2
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
.+.+|.++|+++..+ + .++++|+.|+.|++||+.+++.. + .+.+|...|.++.+.
T Consensus 326 ------l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl----~------------sl~gH~~~V~sl~~~ 380 (537)
T KOG0274|consen 326 ------LLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCL----K------------SLSGHTGRVYSLIVD 380 (537)
T ss_pred ------EeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhceee----e------------eecCCcceEEEEEec
Confidence 345699999999998 4 69999999999999999988763 2 366778999999887
Q ss_pred cCCCEEEEEe-CCeEEEEEccCCC-CceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 351 RNGRHILSRD-YMTLKLWDINMDS-GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 351 ~~g~~l~~~~-~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+. ..+++|+ |+.|++||+.+ . +++.++.+|...+. .....+++|++++.|+.|++||..
T Consensus 381 ~~-~~~~Sgs~D~~IkvWdl~~-~~~c~~tl~~h~~~v~-----------------~l~~~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 381 SE-NRLLSGSLDTTIKVWDLRT-KRKCIHTLQGHTSLVS-----------------SLLLRDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred Cc-ceEEeeeeccceEeecCCc-hhhhhhhhcCCccccc-----------------ccccccceeEeccccccEEEeecc
Confidence 65 7888876 59999999998 6 89999999987632 233467899999999999999999
Q ss_pred CCceeeeeecC-CCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 429 EGSAESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 429 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+++++ .++++ |...+..+.+. ...+++++.|+.+++
T Consensus 442 ~~~~~-~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l 478 (537)
T KOG0274|consen 442 EGECL-RTLEGRHVGGVSALALG--KEEILCSSDDGSVKL 478 (537)
T ss_pred cCcee-eeeccCCcccEEEeecC--cceEEEEecCCeeEE
Confidence 98655 67777 67888887776 678899999999999
No 138
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=5.6e-23 Score=178.26 Aligned_cols=300 Identities=17% Similarity=0.255 Sum_probs=210.4
Q ss_pred ccccccceEEEEEcCCC--CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccc
Q 010256 31 EVQEVDIISAIEFDKSG--DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g--~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (514)
..-+..+|++++|+|.. +++|+|+..|.|-+||+.+.+ |+..-...+..|.
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~-------------------~d~d~v~~f~~hs-------- 234 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE-------------------KDKDGVYLFTPHS-------- 234 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC-------------------CccCceEEeccCC--------
Confidence 34678999999999954 589999999999999996443 2333344577787
Q ss_pred cccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
.+|.+|.|+|... ..+++++.||+|++-|++++....+....
T Consensus 235 ----~~Vs~l~F~P~n~-s~i~ssSyDGtiR~~D~~~~i~e~v~s~~--------------------------------- 276 (498)
T KOG4328|consen 235 ----GPVSGLKFSPANT-SQIYSSSYDGTIRLQDFEGNISEEVLSLD--------------------------------- 276 (498)
T ss_pred ----ccccceEecCCCh-hheeeeccCceeeeeeecchhhHHHhhcC---------------------------------
Confidence 8899999988544 58899999999999999876422111110
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
.....+.++.|+.+...++.+ .=|...+||+++.+..
T Consensus 277 ------------------------------------------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 277 ------------------------------------------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE 314 (498)
T ss_pred ------------------------------------------ccceeeeeccccCCCccEEEeecccceEEEEeecCCcc
Confidence 011234567777777677777 6669999999988875
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
.. .+.-|...|.+++++|..+.+|++++.|++.+|||+|.-..... +......|...|.+.
T Consensus 315 ~~-------~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s------------p~lst~~HrrsV~sA 375 (498)
T KOG4328|consen 315 YE-------NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS------------PFLSTLPHRRSVNSA 375 (498)
T ss_pred ch-------hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC------------cceecccccceeeee
Confidence 54 34557789999999999989999999999999999987543211 011234577899999
Q ss_pred EEecCCCEEEE-EeCCeEEEEEcc---CCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEE
Q 010256 348 KFARNGRHILS-RDYMTLKLWDIN---MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (514)
Q Consensus 348 ~~s~~g~~l~~-~~~~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (514)
.|||.+-.|++ +.|..|+|||.. ....++.++. |.... +.....+...|.|+..++++|..-..|-
T Consensus 376 yFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t---------~RwlT~fKA~W~P~~~li~vg~~~r~ID 445 (498)
T KOG4328|consen 376 YFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRT---------GRWLTPFKAAWDPDYNLIVVGRYPRPID 445 (498)
T ss_pred EEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcc---------cccccchhheeCCCccEEEEeccCccee
Confidence 99997766776 567999999984 2133344333 22211 1111234689999999999999999999
Q ss_pred EEecCCCceeeeeecCC-CcceeE-EEECCCCCceeecC-CCCeEEE
Q 010256 424 VFGCSEGSAESTTLEAS-KNPMRR-QVQTPSRPSRPLGS-LSGVVRR 467 (514)
Q Consensus 424 iwd~~~~~~~~~~~~~~-~~~v~~-~~~~~~~~~l~s~s-~d~~v~i 467 (514)
|+|-+.+ +....+... ...|.+ ..|+|-+..+++|+ ..|.|.+
T Consensus 446 v~~~~~~-q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v 491 (498)
T KOG4328|consen 446 VFDGNGG-QMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV 491 (498)
T ss_pred EEcCCCC-EEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence 9998765 333333322 223443 47788888566665 4455555
No 139
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=7.2e-23 Score=173.25 Aligned_cols=218 Identities=17% Similarity=0.218 Sum_probs=161.8
Q ss_pred ccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010256 230 HAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 307 (514)
.+|...=++++|||- .-.|++| --+.|++|...++.-.. .+..+.+|...|-.++|+|....+|++|+-||+|
T Consensus 208 ~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v-----d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsI 282 (440)
T KOG0302|consen 208 NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV-----DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSI 282 (440)
T ss_pred cccCccceeeecccccccccccCccccceEeeeeccCceee-----cCccccccccchhhhccCCccCceEEeeecCceE
Confidence 788888899999994 3347788 68899999998754332 3346778999999999999988899999999999
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccC--CCCceeeeeeccc
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM--DSGPVATFQVHEH 384 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~--~~~~~~~~~~~~~ 384 (514)
+|||+|.+.... ..+.+.|.+.|+-+.|+.+-.+|++|+| |+++|||++. .++++..++.|..
T Consensus 283 rIWDiRs~~~~~--------------~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~ 348 (440)
T KOG0302|consen 283 RIWDIRSGPKKA--------------AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA 348 (440)
T ss_pred EEEEecCCCccc--------------eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence 999999974321 1123567789999999998889999877 9999999985 3678899999987
Q ss_pred cccccccccccCCccceeeEEEcCC-CCEEEEEeCCCcEEEEecCCCceee----eeecCCCcceeEEEECCCCCceeec
Q 010256 385 LRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAES----TTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
. |+++.|+|. ...|++++.|..|.|||+....... ...++-..-..++.|-+.
T Consensus 349 p---------------ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq------- 406 (440)
T KOG0302|consen 349 P---------------ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ------- 406 (440)
T ss_pred C---------------eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEec-------
Confidence 6 449999985 4568888999999999997542211 001110011112222111
Q ss_pred CCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCC-EEEEEecCcEEEEe
Q 010256 460 SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN-SIACAASNSLYMYY 513 (514)
Q Consensus 460 s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~-~l~~~~~~~~~i~~ 513 (514)
-+..|..+.|+++-+ +|++.+.+++.||.
T Consensus 407 -------------------------GQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 407 -------------------------GQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred -------------------------chhHhhhheeccCCCCeEEEecccceeEEE
Confidence 156778999999854 56677788898885
No 140
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.3e-23 Score=178.92 Aligned_cols=237 Identities=16% Similarity=0.254 Sum_probs=179.4
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
.--+++|+|++-+|+|.+|+.|+..|.|++|.+.+|.. +..+.+|=
T Consensus 78 ~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L-----------------------L~v~~aHY----------- 123 (476)
T KOG0646|consen 78 IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL-----------------------LNVLSAHY----------- 123 (476)
T ss_pred cccccceeeeecCCCceEEEeecccCcEEEEEeccccH-----------------------HHHHHhhc-----------
Confidence 33468899999999999999999999999999999884 35567776
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..|+++.| +.||.+|++|+.||.|.+|.+..-
T Consensus 124 -Q~ITcL~f--s~dgs~iiTgskDg~V~vW~l~~l--------------------------------------------- 155 (476)
T KOG0646|consen 124 -QSITCLKF--SDDGSHIITGSKDGAVLVWLLTDL--------------------------------------------- 155 (476)
T ss_pred -cceeEEEE--eCCCcEEEecCCCccEEEEEEEee---------------------------------------------
Confidence 78999999 789999999999999999987532
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCCCcee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
+....+.. ..+...+ ..|+-+|+++...+. ..+++++ .|.++++||+..+....
T Consensus 156 -------v~a~~~~~---------------~~p~~~f-~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl 212 (476)
T KOG0646|consen 156 -------VSADNDHS---------------VKPLHIF-SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL 212 (476)
T ss_pred -------cccccCCC---------------ccceeee-ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE
Confidence 11111111 1122232 689999999987664 4577787 99999999999776554
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccc--ceeE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA--SISD 346 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~ 346 (514)
.+. ....+.+++.+|.+ ..++.|+.+|.|.+.++.+.......+..-..+........+.+|.+ .|++
T Consensus 213 ti~---------fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITc 282 (476)
T KOG0646|consen 213 TIT---------FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITC 282 (476)
T ss_pred EEe---------cCCcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeE
Confidence 431 46779999999998 89999999999999988664321111111111222233556788888 9999
Q ss_pred EEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccc
Q 010256 347 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH 384 (514)
Q Consensus 347 ~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~ 384 (514)
++++-||.+|++|+. |.|+|||+.+ .++++++....+
T Consensus 283 Lais~DgtlLlSGd~dg~VcvWdi~S-~Q~iRtl~~~kg 320 (476)
T KOG0646|consen 283 LAISTDGTLLLSGDEDGKVCVWDIYS-KQCIRTLQTSKG 320 (476)
T ss_pred EEEecCccEEEeeCCCCCEEEEecch-HHHHHHHhhhcc
Confidence 999999999999975 9999999997 788877764333
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.1e-24 Score=198.92 Aligned_cols=235 Identities=21% Similarity=0.337 Sum_probs=197.0
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
..|...+.++..-..++.+++| .|..+.+|.+....... .+.+|..+|.++.|++.. .+|+.|+.+|+|+
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~--------S~~~hespIeSl~f~~~E-~LlaagsasgtiK 95 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT--------SLTGHESPIESLTFDTSE-RLLAAGSASGTIK 95 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh--------eeeccCCcceeeecCcch-hhhcccccCCcee
Confidence 5788888888886678889998 89999999987544332 578899999999999998 8999999999999
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeecccccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP 387 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (514)
+||+...+.. + .+.+|...+.+++|+|-+.|.++|+ |+.+++||.+. ..+...+.+|...+.
T Consensus 96 ~wDleeAk~v----r------------tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~vv~ 158 (825)
T KOG0267|consen 96 VWDLEEAKIV----R------------TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-KGCSHTYKSHTRVVD 158 (825)
T ss_pred eeehhhhhhh----h------------hhhccccCcceeeeccceEEeccccccccceehhhhc-cCceeeecCCcceeE
Confidence 9999987652 2 3677778999999999999998875 59999999997 788889888776543
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+.|+|+|++++.|++|..++|||+..| .....++.|...+..+.|+|..-++++||.|+++++
T Consensus 159 ---------------~l~lsP~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f 222 (825)
T KOG0267|consen 159 ---------------VLRLSPDGRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRF 222 (825)
T ss_pred ---------------EEeecCCCceeeccCCcceeeeeccccc-ccccccccccccccccccCchhhhhccCCCCceeee
Confidence 7899999999999999999999999877 555889999999999999999999999999999999
Q ss_pred eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcE
Q 010256 468 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSL 509 (514)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~ 509 (514)
|.+..+++....-.....|.+.+|+|+++.+++|....+
T Consensus 223 ---~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 223 ---WDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred ---eccceeEEeeccCCccCCceeeeecCCceeeecCchhhh
Confidence 333323333333334788999999999999998865443
No 142
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=3.9e-22 Score=163.41 Aligned_cols=305 Identities=14% Similarity=0.198 Sum_probs=197.5
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|+++..-+ ..|+++++|+.||.|.+||+++-.......+ +
T Consensus 44 GsvNsL~id~-tegrymlSGgadgsi~v~Dl~n~t~~e~s~l------------i------------------------- 85 (397)
T KOG4283|consen 44 GSVNSLQIDL-TEGRYMLSGGADGSIAVFDLQNATDYEASGL------------I------------------------- 85 (397)
T ss_pred Cccceeeecc-ccceEEeecCCCccEEEEEeccccchhhccc------------e-------------------------
Confidence 8899999975 4578999999999999999986431110000 0
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
+ ..+.+ ..+....+|+..|.++.|-|- .-.+.++ -|.++++||.++.+....+
T Consensus 86 --------~---k~~c~--------------v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F 140 (397)
T KOG4283|consen 86 --------A---KHKCI--------------VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF 140 (397)
T ss_pred --------e---heeee--------------ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe
Confidence 0 00000 011113689999999999985 4456666 7999999999977665432
Q ss_pred eccCCCcccccCCceEEEEEecCC--CcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTH--CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
...+.|++-+++|-. ..++|+|..+-.|++.|+.+|... ..+.+|...|.++.
T Consensus 141 ---------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s----------------H~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 141 ---------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS----------------HTLSGHRDGVLAVE 195 (397)
T ss_pred ---------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce----------------eeeccccCceEEEE
Confidence 145667877887743 158899999999999999998762 34778889999999
Q ss_pred EecCCCEEEE-Ee-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEe
Q 010256 349 FARNGRHILS-RD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (514)
Q Consensus 349 ~s~~g~~l~~-~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 426 (514)
|+|...++++ |+ ||.|++||++....++..+..|....+.+.. ........++.++|+.|+.++++.+.|.++++|+
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~-~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK-TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc-ccccccceeeeeeecccchhhhhccCccceEEee
Confidence 9999887765 54 5999999999866788888888754433332 1111122456999999999999999999999999
Q ss_pred cCCCceeeeeec--CCCcce-eEEEE-CCCCCceeecCCCCeEEE---eeCCCCCccccCCcccccccceEEEEEcCCCC
Q 010256 427 CSEGSAESTTLE--ASKNPM-RRQVQ-TPSRPSRPLGSLSGVVRR---VKGADNSALDANGNAFDFSMKLLHLAWHPSEN 499 (514)
Q Consensus 427 ~~~~~~~~~~~~--~~~~~v-~~~~~-~~~~~~l~s~s~d~~v~i---~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~ 499 (514)
..+|......+- .|.... ..+.. +-+...++.--.++.+.+ ..|..+. ..-.|...|.+.++-|+-.
T Consensus 275 ~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir------~l~~h~k~i~c~~~~~~fq 348 (397)
T KOG4283|consen 275 MESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVR------RLSTHLKRINCAAYRPDFE 348 (397)
T ss_pred cccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEE------eeecccceeeEEeecCchh
Confidence 988754321111 111110 00000 111111111112233333 1111111 1112577888888888877
Q ss_pred EEEEEe-cCcEEEE
Q 010256 500 SIACAA-SNSLYMY 512 (514)
Q Consensus 500 ~l~~~~-~~~~~i~ 512 (514)
.+.++. +.+++.|
T Consensus 349 ~~~tg~~d~ni~~w 362 (397)
T KOG4283|consen 349 QCFTGDMNGNIYMW 362 (397)
T ss_pred hhhccccCCccccc
Confidence 777776 5556655
No 143
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=2e-22 Score=170.55 Aligned_cols=268 Identities=18% Similarity=0.286 Sum_probs=186.7
Q ss_pred ccccccceEEEEEcCCCC--eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccc
Q 010256 31 EVQEVDIISAIEFDKSGD--HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~--~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (514)
.++|.+.|+.+..++-|+ +.|+=+..|.|.||++...- +.+.......+. ...+.+.++.+|.
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l------~~l~~~~~~~~~-s~~~Pl~t~~ghk-------- 211 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL------NALSEPGLEVKD-SEFRPLFTFNGHK-------- 211 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhh------hhhcCccccccc-cccCceEEecccC--------
Confidence 568899999999888654 55555688999999975321 222222221222 3445566788887
Q ss_pred cccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
..=+.++|+|...| .|++|..-+.|++|...++....
T Consensus 212 ----~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~v-------------------------------------- 248 (440)
T KOG0302|consen 212 ----GEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKV-------------------------------------- 248 (440)
T ss_pred ----ccceeeeccccccc-ccccCccccceEeeeeccCceee--------------------------------------
Confidence 66899999986665 68899888999999988764211
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCc
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQ 266 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~ 266 (514)
+. +. +.+|+..|-.++|+|. ...|++| .||+|+|||++.+.+
T Consensus 249 ----------------------------d~-------~P-f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 249 ----------------------------DQ-------RP-FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK 292 (440)
T ss_pred ----------------------------cC-------cc-ccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence 00 01 2569999999999997 5577788 899999999997644
Q ss_pred eeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
...+ ....|.+-|+.|.|+... .+||+|+.||+++|||+|+-+.- + +...|+-|+.+|++
T Consensus 293 ~~~~------~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~-~------------pVA~fk~Hk~pIts 352 (440)
T KOG0302|consen 293 KAAV------STKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG-Q------------PVATFKYHKAPITS 352 (440)
T ss_pred ccee------EeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC-C------------cceeEEeccCCeeE
Confidence 3332 346789999999999998 59999999999999999985532 1 23346677899999
Q ss_pred EEEecCC--CEEEEEeCCeEEEEEccCCCC---------------ceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 347 IKFARNG--RHILSRDYMTLKLWDINMDSG---------------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 347 ~~~s~~g--~~l~~~~~~~i~iwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
+.|+|.. -+.++|.|.+|.|||+..+.. +.+.+..|.+.. .+-.+.|++.
T Consensus 353 ieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk-------------e~KevhWH~Q 419 (440)
T KOG0302|consen 353 IEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK-------------EVKEVHWHRQ 419 (440)
T ss_pred EEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchh-------------HhhhheeccC
Confidence 9999943 344446779999999975211 112233333211 1236888875
Q ss_pred C-CEEEEEeCCCcEEEEe
Q 010256 410 G-GRVATGSYSNLFRVFG 426 (514)
Q Consensus 410 ~-~~l~s~~~dg~i~iwd 426 (514)
- .+|++.+.|| +.||.
T Consensus 420 iPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 420 IPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CCCeEEEecccc-eeEEE
Confidence 3 4777777877 44443
No 144
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=5.7e-22 Score=177.62 Aligned_cols=320 Identities=13% Similarity=0.184 Sum_probs=224.3
Q ss_pred eeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccccc
Q 010256 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (514)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (514)
..+.||. +.|.+|.. .+.|.+|++|+.||+|+||.+.++.+.....+. +.|.
T Consensus 394 lvyrGHt------------g~Vr~iSv--dp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---------~~I~----- 445 (733)
T KOG0650|consen 394 LVYRGHT------------GLVRSISV--DPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---------SEIR----- 445 (733)
T ss_pred eeEeccC------------CeEEEEEe--cCCcceeeecCCCCcEEEEEeecceEEEEEeec---------ceeE-----
Confidence 3477888 89999999 557789999999999999999999988887776 3344
Q ss_pred CCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--
Q 010256 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-- 251 (514)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-- 251 (514)
+++|+|.+..-. ++++.... +.|-+ .. .+ ..+..-+....|+++
T Consensus 446 --~vaw~P~~~~~v----------LAvA~~~~-~~ivn----p~------------~G-----~~~e~~~t~ell~~~~~ 491 (733)
T KOG0650|consen 446 --SVAWNPLSDLCV----------LAVAVGEC-VLIVN----PI------------FG-----DRLEVGPTKELLASAPN 491 (733)
T ss_pred --EEEecCCCCcee----------EEEEecCc-eEEeC----cc------------cc-----chhhhcchhhhhhcCCC
Confidence 889999886531 12222222 32222 00 00 001111122333333
Q ss_pred ---cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC---CeEEEEEcCCCccccccccce
Q 010256 252 ---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLF 325 (514)
Q Consensus 252 ---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~ 325 (514)
.++.+..|.-...++...-+ ...-.|...|..+.|+..| .+|++...+ ..|.|+++...... ..
T Consensus 492 ~~~p~~~~~~W~~~~~~e~~~~v----~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~~sQ----~P- 561 (733)
T KOG0650|consen 492 ESEPDAAVVTWSRASLDELEKGV----CIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQLSKRKSQ----SP- 561 (733)
T ss_pred ccCCcccceeechhhhhhhccce----EEEEecCCccceeeeecCC-ceEEEeccCCCcceEEEEeccccccc----Cc-
Confidence 36678888755322211000 0122378889999999999 899887764 46888888765431 11
Q ss_pred eccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEE
Q 010256 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (514)
|....+.|.++.|+|...+|+.++...|+|||+.. ...++.+...... |.+++
T Consensus 562 -----------F~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~k-qelvKkL~tg~kw---------------iS~ms 614 (733)
T KOG0650|consen 562 -----------FRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSK-QELVKKLLTGSKW---------------ISSMS 614 (733)
T ss_pred -----------hhhcCCceeEEEecCCCceEEEEeccceEEEehhH-HHHHHHHhcCCee---------------eeeee
Confidence 22233679999999999999999999999999986 6666555444333 23899
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCC---ccccC--C
Q 010256 406 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNS---ALDAN--G 480 (514)
Q Consensus 406 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~---~~~~~--~ 480 (514)
.+|.|.-|+.|+.|+++..||+.-..+..+++..|...+++++|++.-+++++|+.||++.+..|.-.. +..+. .
T Consensus 615 ihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPl 694 (733)
T KOG0650|consen 615 IHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPL 694 (733)
T ss_pred ecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEee
Confidence 999999999999999999999998777779999999999999999999999999999999993222111 11111 1
Q ss_pred -cccccccc----eEEEEEcCCCCEEEEEe-cCcEEEE
Q 010256 481 -NAFDFSMK----LLHLAWHPSENSIACAA-SNSLYMY 512 (514)
Q Consensus 481 -~~~~~~~~----v~~~~~spd~~~l~~~~-~~~~~i~ 512 (514)
.+.+|... |++..|||...+|.+++ ++.+.+|
T Consensus 695 K~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 695 KRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 12245554 99999999999999776 5577777
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=6.7e-22 Score=173.28 Aligned_cols=263 Identities=14% Similarity=0.164 Sum_probs=191.9
Q ss_pred cceeEEEEeeCCCCcEEEE--eeCCCeEEEEEcCcc--EEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 113 EKINKIRWCQSANSALYLL--STNDKTIKLWKVQEK--KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s--~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
..+.++.|. ... .|++ .+.|+.+++|.-... ++..+....... - .+++......+
T Consensus 35 pg~~s~~w~--~~n-~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~--------~-------~Cv~~~s~S~y--- 93 (673)
T KOG4378|consen 35 PGDFSFNWQ--RRN-FLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDN--------A-------FCVACASQSLY--- 93 (673)
T ss_pred Ccceeeecc--ccc-eEEEeecCCceeEEEecccCCCCccceeeccccch--------H-------HHHhhhhccee---
Confidence 459999994 332 3444 478899999975433 211111111100 0 02222222333
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
.++|+..+.++||| +.. +....++.+|...|+++.++....+||++ ..|.|.+..+.++...
T Consensus 94 ---------~~sgG~~~~Vkiwd-l~~-------kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t 156 (673)
T KOG4378|consen 94 ---------EISGGQSGCVKIWD-LRA-------KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT 156 (673)
T ss_pred ---------eeccCcCceeeehh-hHH-------HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc
Confidence 38999999999999 331 22234468999999999999999999999 8999999999876544
Q ss_pred eeeeccCCCccccc-CCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 268 FNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 268 ~~~~~~~~~~~~~~-~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
. .+... ...|+-+.|+|....+|.+++.+|.|.+||+...... . .....|..+...
T Consensus 157 t--------~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~----~-----------~~~~~HsAP~~g 213 (673)
T KOG4378|consen 157 T--------TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI----F-----------HASEAHSAPCRG 213 (673)
T ss_pred c--------ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc----c-----------chhhhccCCcCc
Confidence 2 22222 4556789999988678889999999999999765542 1 123557789999
Q ss_pred EEEecCCCEEE-E-EeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEE
Q 010256 347 IKFARNGRHIL-S-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (514)
Q Consensus 347 ~~~s~~g~~l~-~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 424 (514)
++|+|....|+ + |-|..|.+||... .+...++...... ..++|+++|.+|+.|+..|.|..
T Consensus 214 icfspsne~l~vsVG~Dkki~~yD~~s-~~s~~~l~y~~Pl----------------stvaf~~~G~~L~aG~s~G~~i~ 276 (673)
T KOG4378|consen 214 ICFSPSNEALLVSVGYDKKINIYDIRS-QASTDRLTYSHPL----------------STVAFSECGTYLCAGNSKGELIA 276 (673)
T ss_pred ceecCCccceEEEecccceEEEeeccc-ccccceeeecCCc----------------ceeeecCCceEEEeecCCceEEE
Confidence 99999766554 4 5579999999996 6666666554433 28999999999999999999999
Q ss_pred EecCCCceeeeeecCCCcceeEEEECCCC
Q 010256 425 FGCSEGSAESTTLEASKNPMRRQVQTPSR 453 (514)
Q Consensus 425 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (514)
||++..+....++..|...|++++|-|..
T Consensus 277 YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 277 YDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EecccCCCCceEeeecccceeEEEeeecc
Confidence 99998877779999999999999997764
No 146
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=4.2e-24 Score=195.26 Aligned_cols=193 Identities=18% Similarity=0.266 Sum_probs=165.2
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
.+|..+|.++.|+++..+|++| .+|+|++||++..+... ++.+|...+.++.|+|.+ .+++.|+.|..++
T Consensus 67 ~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr--------tLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~ 137 (825)
T KOG0267|consen 67 TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR--------TLTGHLLNITSVDFHPYG-EFFASGSTDTDLK 137 (825)
T ss_pred eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh--------hhhccccCcceeeeccce-EEeccccccccce
Confidence 7899999999999999999999 99999999999665442 788999999999999999 8999999999999
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP 387 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (514)
+||++...+ .+. +.+|...+..+.|+|+|++++.|++ ..++|||+.. ++.+..+..|++.+.
T Consensus 138 iwD~Rk~Gc----~~~------------~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a-gk~~~ef~~~e~~v~ 200 (825)
T KOG0267|consen 138 IWDIRKKGC----SHT------------YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA-GKLSKEFKSHEGKVQ 200 (825)
T ss_pred ehhhhccCc----eee------------ecCCcceeEEEeecCCCceeeccCCcceeeeecccc-ccccccccccccccc
Confidence 999986544 233 4446678999999999999999865 9999999997 999999998887533
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCe
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~ 464 (514)
++.|+|..-++++|+.|+.+++||+++- ..+.........|.+..|+|+++.+++|.....
T Consensus 201 ---------------sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 201 ---------------SLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred ---------------ccccCchhhhhccCCCCceeeeecccee-EEeeccCCccCCceeeeecCCceeeecCchhhh
Confidence 7889999999999999999999999975 233445555788999999999999988866543
No 147
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=1.4e-21 Score=176.49 Aligned_cols=314 Identities=18% Similarity=0.176 Sum_probs=207.1
Q ss_pred ccccceEE--EEEcC---CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 33 QEVDIISA--IEFDK---SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 33 ~h~~~V~~--~~~s~---~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
.|.-++.- ..|++ ....||.+..||.|.++|..... |.++.+-+..+..|.
T Consensus 45 ~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~-----------------fr~ee~~lk~~~aH~------- 100 (720)
T KOG0321|consen 45 NDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIV-----------------FRLEERQLKKPLAHK------- 100 (720)
T ss_pred cCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhh-----------------cchhhhhhccccccc-------
Confidence 34444444 66766 34689999999999999976443 122333345567777
Q ss_pred ccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
..|..+.|.| ....|++++.|.++++||+.+.++......-.+ .+.+. +++|.|+...+
T Consensus 101 -----nAifDl~wap--ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH------~~Svk-------S~cf~~~n~~v- 159 (720)
T KOG0321|consen 101 -----NAIFDLKWAP--GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH------TGSVK-------SECFMPTNPAV- 159 (720)
T ss_pred -----ceeEeeccCC--CceeEEEccCCceeeeeeeccceeecceeeccc------ccccc-------hhhhccCCCcc-
Confidence 8899999976 345888999999999999999887655322211 23343 77888877754
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccc----------------cc----cccccccCccCeEE---EEECCC
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVA----------------GC----RRIYAHAHDYHINS---ISNNSD 244 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~----------------~~----~~~~~~~h~~~v~~---~~~~~~ 244 (514)
+++|+.||.|.|||+--+....... ++ .+. ...+...|.+ +.+..|
T Consensus 160 ----------F~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k-~kA~s~ti~ssvTvv~fkD 228 (720)
T KOG0321|consen 160 ----------FCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK-WKAASNTIFSSVTVVLFKD 228 (720)
T ss_pred ----------eeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc-cccccCceeeeeEEEEEec
Confidence 5899999999999942222000000 00 011 1344455555 556678
Q ss_pred CCEEEEe--cCCeEEEEeccCCCceeeeeccCCCccccc---CCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccc
Q 010256 245 GETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDL---TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD 319 (514)
Q Consensus 245 ~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~ 319 (514)
...||++ .|+.|++||+++.....+.-......+..| ...+.++.....| .+|.+.+.|+.|.+|++.+...-
T Consensus 229 e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~s- 306 (720)
T KOG0321|consen 229 ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSIS- 306 (720)
T ss_pred cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCcC-
Confidence 8888887 599999999997654433211111122223 4457788888888 55555666999999999875431
Q ss_pred ccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCc
Q 010256 320 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSI 398 (514)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (514)
+...+.++.. ...-..-..+|++.++++|+ +...++|.+.....+...+.+|...
T Consensus 307 -P~~~~sg~~~----------~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~e------------- 362 (720)
T KOG0321|consen 307 -PVAEFSGKLN----------SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTRE------------- 362 (720)
T ss_pred -chhhccCccc----------ceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceE-------------
Confidence 1222222110 01112234689999999986 5999999999877778888888765
Q ss_pred cceeeEEEcCCC-CEEEEEeCCCcEEEEecCCC
Q 010256 399 FDKFECCLSGDG-GRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 399 ~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~ 430 (514)
|++++|.|.. .-++++++|.+++||++..+
T Consensus 363 --Vt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 363 --VTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred --EEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 5589997743 23677799999999999765
No 148
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=5.3e-21 Score=172.68 Aligned_cols=197 Identities=15% Similarity=0.146 Sum_probs=138.4
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC-CCEEEEEe-C
Q 010256 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRD-Y 361 (514)
Q Consensus 284 ~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~-~ 361 (514)
.|+.+.|.|.....|++++.||.|++|.+..+..... ...+...++.|...|+++.|+|- ...|++++ |
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~---------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd 699 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN---------EMTPEKILTIHGEKITSLRFHPLAADVLAVASYD 699 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcc---------cCCcceeeecccceEEEEEecchhhhHhhhhhcc
Confidence 3567777776667899999999999999988664211 11224568889999999999993 44666665 4
Q ss_pred CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCC
Q 010256 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK 441 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 441 (514)
.+|++||+.+ .+....+.+|... |+.++|||||+.+|+.+.||+|++|+..++......-.+..
T Consensus 700 ~Ti~lWDl~~-~~~~~~l~gHtdq---------------If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv 763 (1012)
T KOG1445|consen 700 STIELWDLAN-AKLYSRLVGHTDQ---------------IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV 763 (1012)
T ss_pred ceeeeeehhh-hhhhheeccCcCc---------------eeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCc
Confidence 9999999998 8888899999865 45999999999999999999999999987755433322221
Q ss_pred -cceeEEEECCCCCceeecCCCCeEEE----eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 442 -NPMRRQVQTPSRPSRPLGSLSGVVRR----VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 442 -~~v~~~~~~~~~~~l~s~s~d~~v~i----~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
..-..+.|.-+|+++++.+.|..-.. ++...+....+....++-.-.++--.+.+|.+.|...+
T Consensus 764 gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltG 832 (1012)
T KOG1445|consen 764 GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTG 832 (1012)
T ss_pred cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEec
Confidence 23346788889999998888865443 33333221122222223334444455677877776554
No 149
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=1.5e-21 Score=162.06 Aligned_cols=288 Identities=15% Similarity=0.152 Sum_probs=204.9
Q ss_pred ceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeecccccc-----ccccccccccccCccCeEEEEEC-------C
Q 010256 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN-----LVAGCRRIYAHAHDYHINSISNN-------S 243 (514)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~-------~ 243 (514)
...|+|||.++ ++.+.|..+++|++....-.. ........+.......|..-+|- |
T Consensus 54 gckWSPDGSci------------L~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP 121 (406)
T KOG2919|consen 54 GCKWSPDGSCI------------LSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP 121 (406)
T ss_pred cceeCCCCceE------------EeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC
Confidence 67899999999 999999999999942221111 01111111111223456666663 5
Q ss_pred CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccC---CceEEEEEecCCCcEEEEEecCCeEEEEEc-CCCccc
Q 010256 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT---EVITSAEFHPTHCNMLAYSSSKGSIRLIDM-RQSALC 318 (514)
Q Consensus 244 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~-~~~~~~ 318 (514)
+..++++. .+.-|++||.-+++..... ....|. ....+++|+||| ..|+ ++..+.|++||+ |.|..+
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy------~~ydh~de~taAhsL~Fs~DG-eqlf-aGykrcirvFdt~RpGr~c 193 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASY------RAYDHQDEYTAAHSLQFSPDG-EQLF-AGYKRCIRVFDTSRPGRDC 193 (406)
T ss_pred ccceeeeccccCceeeeeccccccccch------hhhhhHHhhhhheeEEecCCC-CeEe-ecccceEEEeeccCCCCCC
Confidence 67788887 8999999999877644321 112233 234689999999 5665 456789999999 777655
Q ss_pred cccccceeccCCCCccceeeccccceeEEEEecCC-CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccC
Q 010256 319 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND 396 (514)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (514)
.......+++ .+..+-|.+++|+|.. +.++.|+. ..+-||.-.. +.++..+-+|.+.
T Consensus 194 ~vy~t~~~~k---------~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gG----------- 252 (406)
T KOG2919|consen 194 PVYTTVTKGK---------FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGG----------- 252 (406)
T ss_pred cchhhhhccc---------ccccceeeeeeccCCCCcceeeecccceeeeEecCC-CCceeeecccCCC-----------
Confidence 4322222221 2345789999999954 58888887 7888888876 8899999888876
Q ss_pred CccceeeEEEcCCCCEEEEEe-CCCcEEEEecCCCceeeeeecCCCc-ceeEEEE--CCCCCceeecCCCCeEEEeeCCC
Q 010256 397 SIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKN-PMRRQVQ--TPSRPSRPLGSLSGVVRRVKGAD 472 (514)
Q Consensus 397 ~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~--~~~~~~l~s~s~d~~v~i~~~~~ 472 (514)
|+.++|.++|+.|++|+ .|-.|..||++.....+..|..|.. ....+.| .|.+++|++|+.||.|++.+...
T Consensus 253 ----vThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 253 ----VTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred ----eeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 45899999999999987 5778999999987676678888877 5556666 58999999999999999954444
Q ss_pred CCccccCCcccccccceEEEEEcCCCCEEEEEecCcEE
Q 010256 473 NSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 510 (514)
Q Consensus 473 ~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~ 510 (514)
+-. .......++..++.++++|--.++|+++...++
T Consensus 329 ~gn--~~sv~~~~sd~vNgvslnP~mpilatssGqr~f 364 (406)
T KOG2919|consen 329 LGN--EVSVTGNYSDTVNGVSLNPIMPILATSSGQRIF 364 (406)
T ss_pred CCC--cccccccccccccceecCcccceeeeccCceee
Confidence 331 111122468899999999998888888877554
No 150
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.3e-21 Score=168.80 Aligned_cols=233 Identities=14% Similarity=0.121 Sum_probs=179.7
Q ss_pred ccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 233 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
.++|.+++-+|.|.+|+.| ..|.|++|.+.++.... .+..|-..|+++.|+.|+ .+|++|+.||.|.+|+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~--------v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN--------VLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWL 151 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH--------HHHhhccceeEEEEeCCC-cEEEecCCCccEEEEE
Confidence 4789999999999999999 89999999999876553 457799999999999999 8999999999999999
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecC--CCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPK 388 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 388 (514)
+..--.. ... ..+.+...+..|.-+|+++...+. ...|++. .|.++++||+.. +..+.++.....
T Consensus 152 l~~lv~a------~~~-~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~-g~LLlti~fp~s---- 219 (476)
T KOG0646|consen 152 LTDLVSA------DND-HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL-GVLLLTITFPSS---- 219 (476)
T ss_pred EEeeccc------ccC-CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc-ceeeEEEecCCc----
Confidence 8652211 111 144556678889999999998864 3466665 569999999998 888877765543
Q ss_pred cccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCc---------------eeeeeecCCCc--ceeEEEECC
Q 010256 389 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS---------------AESTTLEASKN--PMRRQVQTP 451 (514)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~--~v~~~~~~~ 451 (514)
+.+++.+|-++.++.|+.+|.|.+.++.... .....+.+|.+ +|++++++-
T Consensus 220 ------------i~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~ 287 (476)
T KOG0646|consen 220 ------------IKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST 287 (476)
T ss_pred ------------ceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec
Confidence 2389999999999999999999988875432 12255678988 999999999
Q ss_pred CCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEE
Q 010256 452 SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSI 501 (514)
Q Consensus 452 ~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l 501 (514)
||.+|++|+.||.|++ |.+.............+.|+.+.+.|-.+-+
T Consensus 288 DgtlLlSGd~dg~Vcv---Wdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~ 334 (476)
T KOG0646|consen 288 DGTLLLSGDEDGKVCV---WDIYSKQCIRTLQTSKGPVTNLQINPLERGI 334 (476)
T ss_pred CccEEEeeCCCCCEEE---EecchHHHHHHHhhhccccceeEeeccccce
Confidence 9999999999999999 3222211111222246788888886654433
No 151
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=1.6e-21 Score=176.09 Aligned_cols=300 Identities=15% Similarity=0.139 Sum_probs=196.8
Q ss_pred ccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCC
Q 010256 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 276 (514)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (514)
++.+.++|.|.++| ......... ++.......|...|.++.|-|-...|+++ .|.++++||+++.+..-. .
T Consensus 67 LavadE~G~i~l~d-t~~~~fr~e-e~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~------~ 138 (720)
T KOG0321|consen 67 LAVADEDGGIILFD-TKSIVFRLE-ERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG------R 138 (720)
T ss_pred EEEecCCCceeeec-chhhhcchh-hhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc------e
Confidence 48899999999998 333222211 22222337899999999999966677888 899999999996654321 1
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccc--ccc-ccceeccCC------CCc--cceeecccccee
Q 010256 277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC--DTH-SKLFEEQEA------PGT--RSFFTEIIASIS 345 (514)
Q Consensus 277 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~--~~~-~~~~~~~~~------~~~--~~~~~~~~~~i~ 345 (514)
.+.+|...+.+++|.|+++..|++|+.||.|.|||++-...- ... ...+..+.. +.. ......+...|.
T Consensus 139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ 218 (720)
T KOG0321|consen 139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF 218 (720)
T ss_pred eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee
Confidence 367899999999999999899999999999999999865411 000 001111111 100 111233445555
Q ss_pred E---EEEecCCCEEEEEe--CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCC
Q 010256 346 D---IKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (514)
Q Consensus 346 ~---~~~s~~g~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (514)
+ +.+..|...||+++ |+.|+|||++.. ....... ......-.+++..-.++.++.....|.+|++.+.|+
T Consensus 219 ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~-~~~~r~e----p~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 219 SSVTVVLFKDESTLASAGAADSTIKVWDLRKN-YTAYRQE----PRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred eeeEEEEEeccceeeeccCCCcceEEEeeccc-ccccccC----CCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 5 55667888888853 699999999862 2111110 000001112223334566788888889988888899
Q ss_pred cEEEEecCCCceee-eeecCCCcc-e-eEEEECCCCCceeecCCCCeEEEeeCCCCCccccC-CcccccccceEEEEEcC
Q 010256 421 LFRVFGCSEGSAES-TTLEASKNP-M-RRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDAN-GNAFDFSMKLLHLAWHP 496 (514)
Q Consensus 421 ~i~iwd~~~~~~~~-~~~~~~~~~-v-~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp 496 (514)
.|+.|++.+..... ..+.++... . ..-..+|++.+|++|+.|....+..-..+ +.. ....+|.-.|+.++|.|
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~---e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSP---EAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCc---cCChhhhhCcceEEEEEeecc
Confidence 99999998653322 344444322 1 23356899999999999999999322222 222 23447999999999987
Q ss_pred C--CCEEEEEecCcEEEEe
Q 010256 497 S--ENSIACAASNSLYMYY 513 (514)
Q Consensus 497 d--~~~l~~~~~~~~~i~~ 513 (514)
. .+.+.+..|.++.+|.
T Consensus 371 S~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 371 SATTPVATCSDDFRVKIWR 389 (720)
T ss_pred ccCCCceeeccCcceEEEe
Confidence 5 5656665578899985
No 152
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=1.9e-21 Score=161.77 Aligned_cols=318 Identities=17% Similarity=0.213 Sum_probs=207.5
Q ss_pred ccccceEEEEEcC-----CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 33 QEVDIISAIEFDK-----SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 33 ~h~~~V~~~~~s~-----~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
.|..+|..++|++ +.+.+||.+.+ ++.||+......+ +.+......
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~i--------------------r~lq~y~D~-------- 86 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGI--------------------RLLQSYADE-------- 86 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccce--------------------eeeeeccCC--------
Confidence 5778999999996 33567776544 7999997644321 111111111
Q ss_pred ccccccceeEEEEeeCCC--CcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 108 SLEIEEKINKIRWCQSAN--SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
++++...-++|+-..+ ..++++++.-|.|+|.|+.++++..
T Consensus 87 --d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~----------------------------------- 129 (385)
T KOG1034|consen 87 --DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK----------------------------------- 129 (385)
T ss_pred --CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc-----------------------------------
Confidence 1126677777865333 3477788888999999887765311
Q ss_pred cccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC-CEEEEe-cCCeEEEEeccC
Q 010256 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEI 263 (514)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~ 263 (514)
.+.+|...|+.+.+.|+. ++++++ .|.+|++|++++
T Consensus 130 ------------------------------------------~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 130 ------------------------------------------NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred ------------------------------------------ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 136788999999999985 677778 899999999996
Q ss_pred CCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccc--cee---------ccCCCC
Q 010256 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK--LFE---------EQEAPG 332 (514)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~---------~~~~~~ 332 (514)
.. ++.++ ...++|.+.|.++.|+++| .+|++++.|..+++|++...+....... .+. ....+.
T Consensus 168 ~~-Cv~Vf----GG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~f 241 (385)
T KOG1034|consen 168 DV-CVAVF----GGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHF 241 (385)
T ss_pred Ce-EEEEe----cccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccc
Confidence 54 44433 2578999999999999999 8999999999999999985432211111 111 110000
Q ss_pred cc-ceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccc-cccCCccceeeEEEcCC
Q 010256 333 TR-SFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL-YENDSIFDKFECCLSGD 409 (514)
Q Consensus 333 ~~-~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~ 409 (514)
+. ..-.-|...|.|+.|- |.++++- .++.|..|....-++.+......+.....+..+ +.+..++ ....+|.|-
T Consensus 242 p~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iW-firf~~d~~ 318 (385)
T KOG1034|consen 242 PDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIW-FIRFAFDPW 318 (385)
T ss_pred ccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceE-EEEEeecHH
Confidence 00 1223477788888887 6788884 458999998721122222221111111111111 1111111 124566777
Q ss_pred CCEEEEEeCCCcEEEEecCCCceee-eeec--CCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 410 GGRVATGSYSNLFRVFGCSEGSAES-TTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 410 ~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+++||.|...|.|++||++...... .++. .....|++.+|+.|+.+|+....|++|-.
T Consensus 319 ~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwr 379 (385)
T KOG1034|consen 319 QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWR 379 (385)
T ss_pred HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEE
Confidence 8999999999999999998765432 3333 23467999999999999999999998765
No 153
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=3.9e-20 Score=169.25 Aligned_cols=269 Identities=12% Similarity=0.094 Sum_probs=180.0
Q ss_pred cEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCc
Q 010256 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (514)
Q Consensus 127 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (514)
..+++++.|+.|++||+.+++.......... +..+.|+|+++.+ ++++..++.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~----------------~~~l~~~~dg~~l-----------~~~~~~~~~ 54 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR----------------PRGITLSKDGKLL-----------YVCASDSDT 54 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC----------------CCceEECCCCCEE-----------EEEECCCCe
Confidence 4788899999999999998876665543311 1268899999865 145667899
Q ss_pred EEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCc
Q 010256 207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 284 (514)
Q Consensus 207 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 284 (514)
+++|| ....+ ....+ ..+ ..+..++|+|+++.++++ .++.|++||+++.+.... +. +...
T Consensus 55 v~~~d-~~~~~------~~~~~-~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~--------~~-~~~~ 116 (300)
T TIGR03866 55 IQVID-LATGE------VIGTL-PSG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE--------IP-VGVE 116 (300)
T ss_pred EEEEE-CCCCc------EEEec-cCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE--------ee-CCCC
Confidence 99999 33221 11111 222 235678999999977654 689999999986543321 11 2234
Q ss_pred eEEEEEecCCCcEEEEEecCC-eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-e-C
Q 010256 285 ITSAEFHPTHCNMLAYSSSKG-SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-Y 361 (514)
Q Consensus 285 i~~v~~~p~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~-~ 361 (514)
+.+++|+|++ .++++++.++ .+.+||.++++... .... ...+..++|+|+|++|+.+ . +
T Consensus 117 ~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~----~~~~-------------~~~~~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 117 PEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVD----NVLV-------------DQRPRFAEFTADGKELWVSSEIG 178 (300)
T ss_pred cceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEE----EEEc-------------CCCccEEEECCCCCEEEEEcCCC
Confidence 6789999999 7888887765 56778987765421 1111 1235678999999988654 3 5
Q ss_pred CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEE-EeCCCcEEEEecCCCceeeeeecCC
Q 010256 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT-GSYSNLFRVFGCSEGSAESTTLEAS 440 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~ 440 (514)
+.|++||+.+ ++.+..+..+...... ... ....++|+|++++++. .+.++.+.+||+.+++.. ..+ .+
T Consensus 179 ~~v~i~d~~~-~~~~~~~~~~~~~~~~-------~~~-~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~-~~~-~~ 247 (300)
T TIGR03866 179 GTVSVIDVAT-RKVIKKITFEIPGVHP-------EAV-QPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL-DYL-LV 247 (300)
T ss_pred CEEEEEEcCc-ceeeeeeeeccccccc-------ccC-CccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-EEE-Ee
Confidence 9999999997 6666655433211000 000 0126889999998654 455678999999876443 232 23
Q ss_pred CcceeEEEECCCCCceeec-CCCCeEEEee
Q 010256 441 KNPMRRQVQTPSRPSRPLG-SLSGVVRRVK 469 (514)
Q Consensus 441 ~~~v~~~~~~~~~~~l~s~-s~d~~v~i~~ 469 (514)
...+..+.|+|++++|+++ +.++.|++++
T Consensus 248 ~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 248 GQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred CCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 3468899999999999876 5689999933
No 154
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=4.4e-21 Score=173.20 Aligned_cols=144 Identities=10% Similarity=0.191 Sum_probs=108.0
Q ss_pred cceeEEEEec-CCCEEEEEe-CCeEEEEEccCCC------CceeeeeeccccccccccccccCCccceeeEEEcCC-CCE
Q 010256 342 ASISDIKFAR-NGRHILSRD-YMTLKLWDINMDS------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGR 412 (514)
Q Consensus 342 ~~i~~~~~s~-~g~~l~~~~-~~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~ 412 (514)
..|+.+.|.| |.+.|+.+. ||.|++|.+...+ .+...+..|... |+++.|+|- ...
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK---------------I~slRfHPLAadv 692 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK---------------ITSLRFHPLAADV 692 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce---------------EEEEEecchhhhH
Confidence 4689999999 666777754 5999999997633 234455555443 448999994 568
Q ss_pred EEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEee---CCCCCccccCCcccccccce
Q 010256 413 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK---GADNSALDANGNAFDFSMKL 489 (514)
Q Consensus 413 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~---~~~~~~~~~~~~~~~~~~~v 489 (514)
|++++.|-+|++||+.+. .....+.+|++.|..++|+|+|+.+|+.+.||+++++. +..+.. +-.+ . -...-
T Consensus 693 La~asyd~Ti~lWDl~~~-~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~-Eg~g-p--vgtRg 767 (1012)
T KOG1445|consen 693 LAVASYDSTIELWDLANA-KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY-EGKG-P--VGTRG 767 (1012)
T ss_pred hhhhhccceeeeeehhhh-hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc-cCCC-C--ccCcc
Confidence 899999999999999987 45589999999999999999999999999999999922 222110 1111 0 12344
Q ss_pred EEEEEcCCCCEEEEEe
Q 010256 490 LHLAWHPSENSIACAA 505 (514)
Q Consensus 490 ~~~~~spd~~~l~~~~ 505 (514)
..+-|.-||++|++.+
T Consensus 768 ARi~wacdgr~viv~G 783 (1012)
T KOG1445|consen 768 ARILWACDGRIVIVVG 783 (1012)
T ss_pred eeEEEEecCcEEEEec
Confidence 6788999999988765
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.6e-22 Score=194.77 Aligned_cols=202 Identities=16% Similarity=0.205 Sum_probs=160.7
Q ss_pred ccCccCeEEEEECCCC-CEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010256 230 HAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 307 (514)
..|++.|..+.|++.. ++||+| +||.|.|||+...+..... .-....+.|.+++|+..-.+.|++++.+|++
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~------~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~ 186 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP------GSQAPPSEIKCLSWNRKVSHILASGSPSGRA 186 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC------CCCCCcccceEeccchhhhHHhhccCCCCCc
Confidence 6799999999999975 499999 9999999999865544321 1122467899999998776899999999999
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCC--EEEE-EeC--CeEEEEEccCCCCceeeeeec
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR--HILS-RDY--MTLKLWDINMDSGPVATFQVH 382 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~~-~~~--~~i~iwd~~~~~~~~~~~~~~ 382 (514)
.|||+|..+.+. .+..+. ....+..++|+|+.. ++++ .+| -.|.+||++....+++++++|
T Consensus 187 ~iWDlr~~~pii----~ls~~~----------~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H 252 (1049)
T KOG0307|consen 187 VIWDLRKKKPII----KLSDTP----------GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH 252 (1049)
T ss_pred eeccccCCCccc----ccccCC----------CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc
Confidence 999999876531 111111 113478899999764 3333 344 789999999888899999888
Q ss_pred cccccccccccccCCccceeeEEEcCCC-CEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCC-ceeecC
Q 010256 383 EHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGS 460 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s 460 (514)
+.. |.++.|++.+ .+|++++.|++|.+|+.++++ .+..+....+++..+.|.|... .++.++
T Consensus 253 ~~G---------------ilslsWc~~D~~lllSsgkD~~ii~wN~~tgE-vl~~~p~~~nW~fdv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 253 QRG---------------ILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE-VLGELPAQGNWCFDVQWCPRNPSVMAAAS 316 (1049)
T ss_pred ccc---------------eeeeccCCCCchhhhcccCCCCeeEecCCCce-EeeecCCCCcceeeeeecCCCcchhhhhe
Confidence 864 4589999866 889999999999999999984 4467777888999999999888 888999
Q ss_pred CCCeEEE
Q 010256 461 LSGVVRR 467 (514)
Q Consensus 461 ~d~~v~i 467 (514)
.||.|.|
T Consensus 317 fdgkI~I 323 (1049)
T KOG0307|consen 317 FDGKISI 323 (1049)
T ss_pred eccceee
Confidence 9999999
No 156
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.5e-21 Score=162.03 Aligned_cols=286 Identities=17% Similarity=0.250 Sum_probs=192.7
Q ss_pred CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCc
Q 010256 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (514)
Q Consensus 48 ~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 127 (514)
..+|++..+|.|+|||..+++ ++..++++. ..++.++|.......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-----------------------~l~~fk~~~------------~~~N~vrf~~~ds~h 85 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-----------------------LLEEFKGPP------------ATTNGVRFISCDSPH 85 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-----------------------hhheecCCC------------CcccceEEecCCCCC
Confidence 579999999999999998866 456788887 779999997633445
Q ss_pred EEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcE
Q 010256 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (514)
Q Consensus 128 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 207 (514)
.+.+++.||+|++||++.......+...
T Consensus 86 ~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~---------------------------------------------------- 113 (376)
T KOG1188|consen 86 GVISCSSDGTVRLWDIRSQAESARISWT---------------------------------------------------- 113 (376)
T ss_pred eeEEeccCCeEEEEEeecchhhhheecc----------------------------------------------------
Confidence 7889999999999999876533222211
Q ss_pred EeceeeccccccccccccccccccCc-cCeEEEEECCCCCEEEEe-----cCCeEEEEeccCCCceeeeeccCCCccccc
Q 010256 208 RLPVVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA-----DDLRINLWNLEISNQSFNIVDVKPANMEDL 281 (514)
Q Consensus 208 ~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 281 (514)
.+. .+..+++.+..++.+++| .+-.|.+||++..++.+.. -.+.|
T Consensus 114 -----------------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~------~~eSH 164 (376)
T KOG1188|consen 114 -----------------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ------LNESH 164 (376)
T ss_pred -----------------------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh------hhhhc
Confidence 111 344566666667777776 3788999999977764332 34679
Q ss_pred CCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC--CEEEEE
Q 010256 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--RHILSR 359 (514)
Q Consensus 282 ~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~ 359 (514)
.+.|+++.|+|..+++|++|+.||.|.+||+.....-+....++ .|...|..+.|..++ +.....
T Consensus 165 ~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-------------N~~sSI~~igw~~~~ykrI~clT 231 (376)
T KOG1188|consen 165 NDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-------------NHGSSIHLIGWLSKKYKRIMCLT 231 (376)
T ss_pred cCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-------------cccceeeeeeeecCCcceEEEEE
Confidence 99999999999999999999999999999997654322222222 234679999999887 533334
Q ss_pred eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC-CCCEEEEEeC-CCcEEEEecC---CC--ce
Q 010256 360 DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSY-SNLFRVFGCS---EG--SA 432 (514)
Q Consensus 360 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~-dg~i~iwd~~---~~--~~ 432 (514)
...+..+|+++. +.+...+................+ + +.. +.+| ++...+.++. -|...++-+. ++ ..
T Consensus 232 H~Etf~~~ele~-~~~~~~~~~~~~~~~d~r~~~~~d--Y-~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~ 306 (376)
T KOG1188|consen 232 HMETFAIYELED-GSEETWLENPDVSADDLRKEDNCD--Y-VIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLT 306 (376)
T ss_pred ccCceeEEEccC-CChhhcccCccchhhhHHhhhhhh--h-eee-cccCCCcceEEEeccccCceeEEEeeecccccccC
Confidence 558999999986 554444432211110000000000 0 001 1223 4445554444 5666666544 22 12
Q ss_pred eeeeecC-CCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 433 ESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 433 ~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
....+.+ |..-|+++.|...+.++.+|++||.+.+
T Consensus 307 ~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~ 342 (376)
T KOG1188|consen 307 EPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQA 342 (376)
T ss_pred ccccccCCcHHHHHHHhhhcccceeeccCCCceEEE
Confidence 2356666 7778899999988999999999999999
No 157
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=3.8e-21 Score=164.59 Aligned_cols=334 Identities=13% Similarity=0.187 Sum_probs=215.2
Q ss_pred ccceEEEEEcCCCC-eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 35 VDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 35 ~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
..+|.++.|.++.. .||||+.|..|+||.+......+. .+...+...+..|. .
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~--------------~~~V~y~s~Ls~H~------------~ 66 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG--------------DMKVEYLSSLSRHT------------R 66 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC--------------ceeEEEeecccCCc------------c
Confidence 35799999999776 999999999999999876553210 13445777888888 8
Q ss_pred ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
.|++++| +++|.+|++|+.+|.|.+|....-... .. +. .
T Consensus 67 aVN~vRf--~p~gelLASg~D~g~v~lWk~~~~~~~---~~---------------------------d~-e-------- 105 (434)
T KOG1009|consen 67 AVNVVRF--SPDGELLASGGDGGEVFLWKQGDVRIF---DA---------------------------DT-E-------- 105 (434)
T ss_pred eeEEEEE--cCCcCeeeecCCCceEEEEEecCcCCc---cc---------------------------cc-h--------
Confidence 8999999 667789999999999999987641100 00 00 0
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeec
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 272 (514)
.+.....-..+..+.+|...|..++|+|++.+++++ -|.++++||+..+....
T Consensus 106 ----------------------~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~---- 159 (434)
T KOG1009|consen 106 ----------------------ADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA---- 159 (434)
T ss_pred ----------------------hhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe----
Confidence 000000001112246799999999999999999999 89999999999665442
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccc-cee---ccCCCCcc-cee--ecccccee
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK-LFE---EQEAPGTR-SFF--TEIIASIS 345 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~---~~~~~~~~-~~~--~~~~~~i~ 345 (514)
.+.+|...+..++|.|-+ +++++-+.|...+.+.+...+....... ... ..+..+.. +.+ ........
T Consensus 160 ----~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 160 ----ILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ----eccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 467899999999999998 8999999998777777765443221110 000 00111000 000 01123466
Q ss_pred EEEEecCCCEEEEEe-----CC-----eEEEEEccCCCCceeeeeecccccc--ccccccccCCccceeeEEE-cCCCCE
Q 010256 346 DIKFARNGRHILSRD-----YM-----TLKLWDINMDSGPVATFQVHEHLRP--KLCDLYENDSIFDKFECCL-SGDGGR 412 (514)
Q Consensus 346 ~~~~s~~g~~l~~~~-----~~-----~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~-s~~~~~ 412 (514)
.++|+|+|.++++.+ .+ ..++|+-..-.++...+.......- ..+.+|-.-+.......-| -|-+-.
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 789999999999732 12 3355554433444444443332110 0111110000000000011 122333
Q ss_pred EEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 413 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 413 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+|.++. +.|+|||.++.......-.-|..+++.++|+++|.+|+..|.||...+
T Consensus 315 faiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 315 FAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 445544 689999999876666677789999999999999999999999998877
No 158
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=8.9e-21 Score=162.32 Aligned_cols=307 Identities=15% Similarity=0.183 Sum_probs=199.2
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
++|..+.|.+... ..+++|+.|..|++|.+..++.
T Consensus 14 ~pv~s~dfq~n~~-~~laT~G~D~~iriW~v~r~~~-------------------------------------------- 48 (434)
T KOG1009|consen 14 EPVYSVDFQKNSL-NKLATAGGDKDIRIWKVNRSEP-------------------------------------------- 48 (434)
T ss_pred CceEEEEeccCcc-cceecccCccceeeeeeeecCC--------------------------------------------
Confidence 6799999954322 2899999999999998875431
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCc-----
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ----- 266 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~----- 266 (514)
+..+..|.. ...+..|...|+++.|+|+|+.|++| ++|.|.+|-......
T Consensus 49 --------~~~~~~V~y----------------~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~ 104 (434)
T KOG1009|consen 49 --------GGGDMKVEY----------------LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADT 104 (434)
T ss_pred --------CCCceeEEE----------------eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccc
Confidence 111111211 11147899999999999999999999 999999998761100
Q ss_pred ---e-eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccc
Q 010256 267 ---S-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 267 ---~-~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
. .+.+.. ...+.+|...|..++|+|++ +++++++.|..+++||+..|... . .+.+|..
T Consensus 105 e~~~~ke~w~v-~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~----~------------~~~dh~~ 166 (434)
T KOG1009|consen 105 EADLNKEKWVV-KKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLL----A------------ILDDHEH 166 (434)
T ss_pred hhhhCccceEE-EEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeE----e------------ecccccc
Confidence 0 000000 02466799999999999999 99999999999999999999863 2 2455678
Q ss_pred ceeEEEEecCCCEEEE-EeCCeEEEEEccCCCCceeeee-----e--ccccccccccccccCCccce-eeEEEcCCCCEE
Q 010256 343 SISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQ-----V--HEHLRPKLCDLYENDSIFDK-FECCLSGDGGRV 413 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~-~~~~~i~iwd~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l 413 (514)
.+..++|.|-++++++ +.|...+.+.+.. .+.+.... . ..+.......+|+++..... ..++|+|||.+|
T Consensus 167 yvqgvawDpl~qyv~s~s~dr~~~~~~~~~-~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ll 245 (434)
T KOG1009|consen 167 YVQGVAWDPLNQYVASKSSDRHPEGFSAKL-KQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLL 245 (434)
T ss_pred ccceeecchhhhhhhhhccCcccceeeeee-eeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEE
Confidence 8999999999999998 4555566666654 22221111 1 11122334446666554322 258999999999
Q ss_pred EEEeC----C-----CcEEEEecCCCceeeeeecCCCcceeEEEECC------------------CCCceeecCCCCeEE
Q 010256 414 ATGSY----S-----NLFRVFGCSEGSAESTTLEASKNPMRRQVQTP------------------SRPSRPLGSLSGVVR 466 (514)
Q Consensus 414 ~s~~~----d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~------------------~~~~l~s~s~d~~v~ 466 (514)
++.+. + +..++|+-+..+.....+.....+...+.++| .+-.+|.++ -..|.
T Consensus 246 vtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svy 324 (434)
T KOG1009|consen 246 VTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVY 324 (434)
T ss_pred EcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEE
Confidence 86532 2 23466665544444455555555555555543 222233333 34455
Q ss_pred EeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEE
Q 010256 467 RVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 510 (514)
Q Consensus 467 i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~ 510 (514)
++++..... +.....-|-..|+.++|++||..|+..+.|+-+
T Consensus 325 vydtq~~~P--~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyC 366 (434)
T KOG1009|consen 325 VYDTQTLEP--LAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFC 366 (434)
T ss_pred Eeccccccc--eEEEeeeeeeeecceeecCCCcEEEEeccCCce
Confidence 555554331 111122378899999999999999999877654
No 159
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=9.2e-20 Score=171.28 Aligned_cols=409 Identities=13% Similarity=0.156 Sum_probs=245.9
Q ss_pred EEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEE
Q 010256 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (514)
Q Consensus 40 ~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~ 119 (514)
.-.||+|+++|+... +..|.||...++..+ +.+.+|. .++..+.
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i-----------------------~~l~~~~------------a~l~s~~ 64 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECI-----------------------TSLEDHT------------APLTSVI 64 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecchHhhh-----------------------hhccccc------------Cccceee
Confidence 346899999887764 568999999988854 5678887 8899999
Q ss_pred EeeCCCC-cEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccC-------Ccceec-ccccCCceeecc----CCCcc
Q 010256 120 WCQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAG-------NGPIFG-SHVSAIPKSYMA----NGGCG 186 (514)
Q Consensus 120 ~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~-~~~~~~~~~~~~----~~~~l 186 (514)
+.|++.. .++++++.||.|++||...+.+........+...... +..++. ......-..+++ .+..+
T Consensus 65 ~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~ 144 (792)
T KOG1963|consen 65 VLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRF 144 (792)
T ss_pred ecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeee
Confidence 9886654 5778999999999999999988777665544311100 000000 000000000000 01000
Q ss_pred ccc----------cCCC-CCCcccCCC-------CCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEE
Q 010256 187 ERN----------FGCA-SNDSSFPPG-------GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF 248 (514)
Q Consensus 187 ~~~----------~~~~-~~~~~~~~~-------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 248 (514)
... .... ...+....+ .+..+.+|.+ +......+.+.....|...+.+.+++|.++++
T Consensus 145 ~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v----~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~ 220 (792)
T KOG1963|consen 145 VLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFV----PKHTKHTSSRDITVHHTFNITCVALSPNERYL 220 (792)
T ss_pred EeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEe----cccceeeccchhhhhhcccceeEEeccccceE
Confidence 000 0000 000111111 1123344441 11111122222235677789999999999999
Q ss_pred EEe-cCCeEEEEeccC-CCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccccee
Q 010256 249 ISA-DDLRINLWNLEI-SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 249 ~s~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
++| .||.|.+|.--. .... ..+..+..|...|.+++|+++| .+|++|+..+.+.+|.+.+++.
T Consensus 221 Aa~d~dGrI~vw~d~~~~~~~-----~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k--------- 285 (792)
T KOG1963|consen 221 AAGDSDGRILVWRDFGSSDDS-----ETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK--------- 285 (792)
T ss_pred EEeccCCcEEEEecccccccc-----ccceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc---------
Confidence 999 899999995432 1111 1123567799999999999999 8999999999999999998762
Q ss_pred ccCCCCccceeeccccceeEEEEecCCCEEEE-EeCCeEEEEEccCCCCceeee--------------------------
Q 010256 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATF-------------------------- 379 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~i~iwd~~~~~~~~~~~-------------------------- 379 (514)
.+++-..++|..+.+|||+.+.+. ..|..|.+-.... .....++
T Consensus 286 --------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d-l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr 356 (792)
T KOG1963|consen 286 --------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD-LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR 356 (792)
T ss_pred --------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc-hhhhhhccCccCCCccccccccccceeEEEcCC
Confidence 223444578999999999988776 4678888877632 1111111
Q ss_pred ------eeccccccccccccccCCcc------------------ceeeEEEcCCCCEEEEEe--------CC--CcEEEE
Q 010256 380 ------QVHEHLRPKLCDLYENDSIF------------------DKFECCLSGDGGRVATGS--------YS--NLFRVF 425 (514)
Q Consensus 380 ------~~~~~~~~~~~~~~~~~~~~------------------~v~~~~~s~~~~~l~s~~--------~d--g~i~iw 425 (514)
.+|.+.+ +.-+++....++ .++.++.+..|.+++|.. .| -.+++|
T Consensus 357 ~~~~vln~~~g~v-Q~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW 435 (792)
T KOG1963|consen 357 TNSLVLNGHPGHV-QFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFW 435 (792)
T ss_pred CCceeecCCCceE-EEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEE
Confidence 1111110 011111111111 344556666778888753 22 356788
Q ss_pred ecCCCcee--e--eeecCCCcceeEEEEC-CCCC-ceeecCCCCeEEE--eeCCCC-Cccc----cC-CcccccccceEE
Q 010256 426 GCSEGSAE--S--TTLEASKNPMRRQVQT-PSRP-SRPLGSLSGVVRR--VKGADN-SALD----AN-GNAFDFSMKLLH 491 (514)
Q Consensus 426 d~~~~~~~--~--~~~~~~~~~v~~~~~~-~~~~-~l~s~s~d~~v~i--~~~~~~-~~~~----~~-~~~~~~~~~v~~ 491 (514)
-.....+. + .....|...+.+.++. +... ..+++|.||.+++ ..+.+. .+.. .. ...+ |..++++
T Consensus 436 ~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy-~k~~i~a 514 (792)
T KOG1963|consen 436 QYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY-HKTPITA 514 (792)
T ss_pred EEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc-ccCcccc
Confidence 66543221 1 3345787777666664 3333 7899999999999 211111 1000 00 0011 5789999
Q ss_pred EEEcCCCCEEEEEecCcEEEEeC
Q 010256 492 LAWHPSENSIACAASNSLYMYYA 514 (514)
Q Consensus 492 ~~~spd~~~l~~~~~~~~~i~~~ 514 (514)
++|+.||..|+++.++.+.+|..
T Consensus 515 ~~fs~dGslla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 515 LCFSQDGSLLAVSFDDTITIWDY 537 (792)
T ss_pred hhhcCCCcEEEEecCCEEEEecC
Confidence 99999999999999999999963
No 160
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.2e-20 Score=175.85 Aligned_cols=239 Identities=18% Similarity=0.239 Sum_probs=186.7
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
..|....+.++|.|+|+.|+++ .||.|++|+....... |.++..+...|.+++.. + +.|++|+.+++|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-------P~ti~~~g~~v~~ia~~--s-~~f~~~s~~~tv~ 79 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-------PETIDISGELVSSIACY--S-NHFLTGSEQNTVL 79 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-------CchhhccCceeEEEeec--c-cceEEeeccceEE
Confidence 5788889999999999999999 9999999998755322 22333367777777754 3 5899999999999
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP 387 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (514)
+|.+..+..- ..+.. ..-+++.++|+.+|.+++.|++ -.|++-++.. ......+.+|...+
T Consensus 80 ~y~fps~~~~-~iL~R---------------ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D-~s~~~~lrgh~apV- 141 (933)
T KOG1274|consen 80 RYKFPSGEED-TILAR---------------FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD-SSQEKVLRGHDAPV- 141 (933)
T ss_pred EeeCCCCCcc-ceeee---------------eeccceEEEEecCCcEEEeecCceeEEEEeccc-cchheeecccCCce-
Confidence 9999887631 11112 2247999999999999999876 8999999987 78888899998874
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC--------CCcceeEEEECCCCCceeec
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA--------SKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~s~ 459 (514)
.++.|+|++++||+.+-||.|++|++.++.. ..++.+ ....+..++|+|++..++..
T Consensus 142 --------------l~l~~~p~~~fLAvss~dG~v~iw~~~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~ 206 (933)
T KOG1274|consen 142 --------------LQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP 206 (933)
T ss_pred --------------eeeeEcCCCCEEEEEecCceEEEEEcccchh-hhhcccCCccccccccceeeeeeecCCCCeEEee
Confidence 4999999999999999999999999998633 233332 14557789999999988889
Q ss_pred CCCCeEEE--eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEeC
Q 010256 460 SLSGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYYA 514 (514)
Q Consensus 460 s~d~~v~i--~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~~ 514 (514)
..|+.|++ ..+|.... .+..+ .+...+..++|+|.|++||+++ ++++.||+.
T Consensus 207 ~~d~~Vkvy~r~~we~~f-~Lr~~--~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 207 PVDNTVKVYSRKGWELQF-KLRDK--LSSSKFSDLQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred ccCCeEEEEccCCceehe-eeccc--ccccceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence 99999999 56665552 12211 2344599999999999999887 888999973
No 161
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.8e-20 Score=153.25 Aligned_cols=281 Identities=19% Similarity=0.243 Sum_probs=196.3
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
..++.| ++.|.+||+|+.||.|.|||+.+....
T Consensus 26 a~~~~F--s~~G~~lAvGc~nG~vvI~D~~T~~ia--------------------------------------------- 58 (405)
T KOG1273|consen 26 AECCQF--SRWGDYLAVGCANGRVVIYDFDTFRIA--------------------------------------------- 58 (405)
T ss_pred cceEEe--ccCcceeeeeccCCcEEEEEccccchh---------------------------------------------
Confidence 678889 677889999999999999998765310
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeecc
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
+ .+.+|..+|.+++|+++|+.|+++ .|..|.+||+..+....++
T Consensus 59 -------------------------------r-~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri--- 103 (405)
T KOG1273|consen 59 -------------------------------R-MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI--- 103 (405)
T ss_pred -------------------------------h-hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE---
Confidence 1 137899999999999999999999 9999999999977755443
Q ss_pred CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 274 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
...++|+.+.|+|...+.++..-.+..-.+-++..... ..+. ...+.... ..-.+..|.+.|
T Consensus 104 ------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-----~~Lp-~d~d~dln------~sas~~~fdr~g 165 (405)
T KOG1273|consen 104 ------RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-----SVLP-KDDDGDLN------SSASHGVFDRRG 165 (405)
T ss_pred ------EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-----eecc-CCCccccc------cccccccccCCC
Confidence 24788999999998766666666666666666654321 1111 11111111 122334688999
Q ss_pred CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCc-
Q 010256 354 RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS- 431 (514)
Q Consensus 354 ~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~- 431 (514)
+++++|.. |.+.++|..+ .+++..++.... ..|-.+.|+..|++|+.-+.|..||.|+++.--
T Consensus 166 ~yIitGtsKGkllv~~a~t-~e~vas~rits~--------------~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~ 230 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAET-LECVASFRITSV--------------QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDD 230 (405)
T ss_pred CEEEEecCcceEEEEecch-heeeeeeeechh--------------eeeeEEEEeccCcEEEEecCCceEEEEehhhhcc
Confidence 99999976 9999999997 677776654430 113378899999999999999999999986310
Q ss_pred -----eee--eeec--CCCcceeEEEECCCCCceeecCC-CCeEEEeeCCCCCccccCCcccccc-cceEEEEEcCCCCE
Q 010256 432 -----AES--TTLE--ASKNPMRRQVQTPSRPSRPLGSL-SGVVRRVKGADNSALDANGNAFDFS-MKLLHLAWHPSENS 500 (514)
Q Consensus 432 -----~~~--~~~~--~~~~~v~~~~~~~~~~~l~s~s~-d~~v~i~~~~~~~~~~~~~~~~~~~-~~v~~~~~spd~~~ 500 (514)
... +.+. ..+..-..++|+.+|.|+..++. ...+++... ....+..-..+.. .....++|+|-...
T Consensus 231 ~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~---~~GsLVKILhG~kgE~l~DV~whp~rp~ 307 (405)
T KOG1273|consen 231 EGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEK---SIGSLVKILHGTKGEELLDVNWHPVRPI 307 (405)
T ss_pred cCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEec---CCcceeeeecCCchhheeecccccceee
Confidence 000 1111 12334567899999999877763 345556211 1001111122233 56788999999999
Q ss_pred EEEEecCcEEEEe
Q 010256 501 IACAASNSLYMYY 513 (514)
Q Consensus 501 l~~~~~~~~~i~~ 513 (514)
|+.-..+.+++|.
T Consensus 308 i~si~sg~v~iw~ 320 (405)
T KOG1273|consen 308 IASIASGVVYIWA 320 (405)
T ss_pred eeeccCCceEEEE
Confidence 9999999999996
No 162
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=6.9e-20 Score=151.29 Aligned_cols=272 Identities=14% Similarity=0.248 Sum_probs=181.4
Q ss_pred ccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEe-cCCCcEEEEEecCC
Q 010256 228 YAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSSKG 305 (514)
Q Consensus 228 ~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~-p~~~~~l~~~~~dg 305 (514)
+..+|.+-|.++.|++.|+.+++| .|++|+|||.+......... .....|.+.|..+.|. |.-++.+|+++.|+
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T----s~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT----SSWRAHDGSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe----eeEEecCCcEEEEEecCccccceEEEEecCC
Confidence 347899999999999999999999 99999999976554433321 2457799999999995 43348999999999
Q ss_pred eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC--CCEEEEE-eCCeEEEEEccCCCCceeeeeec
Q 010256 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSR-DYMTLKLWDINMDSGPVATFQVH 382 (514)
Q Consensus 306 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~ 382 (514)
++.||.-...... ..-+.+. .+..+....+.|+++.|.|. |-.|+++ .||.+|||+.-.+.. +......
T Consensus 84 tv~iWEE~~~~~~-~~~~~Wv------~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n-Ls~W~Lq 155 (361)
T KOG2445|consen 84 TVSIWEEQEKSEE-AHGRRWV------RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN-LSQWTLQ 155 (361)
T ss_pred ceeeeeecccccc-cccceeE------EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc-cccchhh
Confidence 9999985321110 0011111 12334455578999999994 6677775 469999999765322 2222111
Q ss_pred cccccccccccccCCccceeeEEEcCC---CCEEEEEeCC-----CcEEEEecCCCce---eeeeecCCCcceeEEEECC
Q 010256 383 EHLRPKLCDLYENDSIFDKFECCLSGD---GGRVATGSYS-----NLFRVFGCSEGSA---ESTTLEASKNPMRRQVQTP 451 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~d-----g~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~ 451 (514)
.+...-+.. ....-..-.++.|+|. ..+||.|+.+ +.++||....... ...++.+|..+|+.++|.|
T Consensus 156 ~Ei~~~~~p--p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 156 HEIQNVIDP--PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhccCC--cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 111100000 0011112337888874 3578888766 5899998766542 2367889999999999998
Q ss_pred C----CCceeecCCCCeEEE--eeCCC--------CCc---ccc----CCcccccccceEEEEEcCCCCEEEEEe-cCcE
Q 010256 452 S----RPSRPLGSLSGVVRR--VKGAD--------NSA---LDA----NGNAFDFSMKLLHLAWHPSENSIACAA-SNSL 509 (514)
Q Consensus 452 ~----~~~l~s~s~d~~v~i--~~~~~--------~~~---~~~----~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~ 509 (514)
+ ..+||+++.|| |+| +...+ ... ..+ ....-+|.++|..+.|+-.|..|++.+ ++.+
T Consensus 234 n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~V 312 (361)
T KOG2445|consen 234 NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCV 312 (361)
T ss_pred ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCcee
Confidence 6 34799999999 888 22100 000 011 122336999999999999999999554 7778
Q ss_pred EEEeC
Q 010256 510 YMYYA 514 (514)
Q Consensus 510 ~i~~~ 514 (514)
.+|.|
T Consensus 313 RLWka 317 (361)
T KOG2445|consen 313 RLWKA 317 (361)
T ss_pred eehhh
Confidence 88864
No 163
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.5e-19 Score=154.22 Aligned_cols=307 Identities=12% Similarity=0.084 Sum_probs=211.9
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|+++.||.++++||+|+.|..+++|+++..-... ..+. ..+.+|.
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k-----------------~~KP-I~~~~~~---------- 103 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK-----------------TPKP-IGVMEHP---------- 103 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc-----------------CCCC-ceeccCc----------
Confidence 46899999999999999999999999999999986322110 0001 1122221
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
|...|.|++| ....+.+++|..+++|.+.|+++.+...+...
T Consensus 104 H~SNIF~L~F--~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~------------------------------------ 145 (609)
T KOG4227|consen 104 HRSNIFSLEF--DLENRFLYSGERWGTVIKHDIETKQSIYVANE------------------------------------ 145 (609)
T ss_pred cccceEEEEE--ccCCeeEecCCCcceeEeeecccceeeeeecc------------------------------------
Confidence 1278999999 45557899999999999999998764433221
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
....+.|+.+..+|..+.|++. .++.|.+||.+.......
T Consensus 146 ---------------------------------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~ 186 (609)
T KOG4227|consen 146 ---------------------------------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS 186 (609)
T ss_pred ---------------------------------------cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc
Confidence 1223578889999998899888 999999999986553332
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+ -+........++.|+|..+.+|++.+..+-+.+||.+..... ++.+.... .++.....-.++.|
T Consensus 187 ~~-----~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~---~~~~~~~~------~L~~~~~~~M~~~~ 252 (609)
T KOG4227|consen 187 LV-----LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP---VYQRSMFK------GLPQENTEWMGSLW 252 (609)
T ss_pred ee-----eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch---HHhhhccc------cCcccchhhhheee
Confidence 21 122345667899999999899999999999999999875432 22111110 01111123577899
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCceeeeee-ccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
+|+|..+.+-.. ..-.+||+-. .++ ..++. |... ..+.... +.+++|-.|- .+++|+.+=.|++|.+
T Consensus 253 ~~~G~Q~msiRR~~~P~~~D~~S-~R~-~V~k~D~N~~-----GY~N~~T---~KS~~F~~D~-~v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 253 SPSGNQFMSIRRGKCPLYFDFIS-QRC-FVLKSDHNPN-----GYCNIKT---IKSMTFIDDY-TVATGSDHWGIHIWKL 321 (609)
T ss_pred CCCCCeehhhhccCCCEEeeeec-ccc-eeEeccCCCC-----cceeeee---eeeeeeecce-eeeccCcccceEEEec
Confidence 999998887543 3445677764 222 22222 2210 0111112 2378887554 4999999999999997
Q ss_pred CCC----------------------ceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 428 SEG----------------------SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~----------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
... ......|++|.+-++++.|+|...+|++.+-...+++
T Consensus 322 P~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~Kl 383 (609)
T KOG4227|consen 322 PRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKL 383 (609)
T ss_pred CCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheec
Confidence 531 1123678899999999999999999999999999999
No 164
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=1.7e-19 Score=153.96 Aligned_cols=298 Identities=18% Similarity=0.280 Sum_probs=197.1
Q ss_pred cchhhccccCcccccccccceEEEEEcC-----CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCcccee
Q 010256 18 KFSQVFGERTAGEEVQEVDIISAIEFDK-----SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (514)
Q Consensus 18 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~-----~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (514)
+|.++||+....+.--..=.|+-++|.. +.++|| .+|+...+...- ...+...+. ..+ -
T Consensus 10 KfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiA--------vi~easgGgaf~--ViPl~k~Gr---~d~---~ 73 (472)
T KOG0303|consen 10 KFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVA--------VIIEASGGGAFL--VIPLVKTGR---MDA---S 73 (472)
T ss_pred hhHHHhccccchhhhhcceeeeeeeccccccccCCceEE--------EEEecCCCccee--ecccccccc---cCC---C
Confidence 5778888877665555556777787764 334444 355554443210 000000000 000 1
Q ss_pred eeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccc
Q 010256 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (514)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (514)
+-.+.||. +.|..++|+|..| ..+|+|+.|-+|.||.+..+-+.....
T Consensus 74 ~P~v~GHt------------~~vLDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~~~lt------------------- 121 (472)
T KOG0303|consen 74 YPLVCGHT------------APVLDIDWCPFND-CVIASGSEDTKVMVWQIPENGLTRDLT------------------- 121 (472)
T ss_pred CCCccCcc------------ccccccccCccCC-ceeecCCCCceEEEEECCCcccccCcc-------------------
Confidence 12467888 9999999998655 689999999999999987654221110
Q ss_pred cCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe
Q 010256 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA 251 (514)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~ 251 (514)
++.. .+.+|...|--++|+|. .+.|+++
T Consensus 122 --------------------------------------------------epvv-~L~gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 122 --------------------------------------------------EPVV-ELYGHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred --------------------------------------------------cceE-EEeecceeEEEEeecccchhhHhhc
Confidence 0111 14899999999999997 5667777
Q ss_pred -cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
.|.+|.+|++.+++..+. +. |.+.|+++.|+-+| .+|++.+.|..|||||.++++....- ..|+.
T Consensus 151 g~Dn~v~iWnv~tgeali~--------l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~----~~heG 216 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALIT--------LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEG----VAHEG 216 (472)
T ss_pred cCCceEEEEeccCCceeee--------cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeec----ccccC
Confidence 999999999998887764 33 99999999999999 89999999999999999999875321 12211
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEE----eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSR----DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (514)
..-..+.|-.+|.++.+| ++..+-+||...-.+++........ .+|.---|
T Consensus 217 -----------~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS--------------nGvl~PFy 271 (472)
T KOG0303|consen 217 -----------AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS--------------NGVLLPFY 271 (472)
T ss_pred -----------CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccC--------------CceEEeee
Confidence 123456677788866665 3589999998764444332222211 11233456
Q ss_pred cCCCCEEE-EEeCCCcEEEEecCCCceeeeeecC--CCcceeEEEECCCC
Q 010256 407 SGDGGRVA-TGSYSNLFRVFGCSEGSAESTTLEA--SKNPMRRQVQTPSR 453 (514)
Q Consensus 407 s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~ 453 (514)
.+|.+++. +|-.|+.||.|.+.....-...+.. ..++-+.+.+.|..
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccc
Confidence 78888766 4558999999999876544444443 34566667776653
No 165
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=8.3e-20 Score=158.77 Aligned_cols=251 Identities=16% Similarity=0.202 Sum_probs=183.4
Q ss_pred ccCccCeEEEEECCCC--CEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCe
Q 010256 230 HAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
..+..+|.+++|+|.. +++++| ..|+|-+||+.+.+....-+ ..+..|..+|.++.|+|.....+++.+.||+
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v----~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV----YLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce----EEeccCCccccceEecCCChhheeeeccCce
Confidence 5677999999999974 467778 79999999996433322110 1356789999999999998889999999999
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccc
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL 385 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~ 385 (514)
|++-|++.+..- .+...+.. ...+.++.|+.+...++.+++ |...+||+++++.....+..|...
T Consensus 259 iR~~D~~~~i~e--~v~s~~~d------------~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK 324 (498)
T KOG4328|consen 259 IRLQDFEGNISE--EVLSLDTD------------NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK 324 (498)
T ss_pred eeeeeecchhhH--HHhhcCcc------------ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc
Confidence 999999876431 12222211 146788999988888888877 999999999977767777777653
Q ss_pred ccccccccccCCccceeeEEEcCCC-CEEEEEeCCCcEEEEecCCCcee---eeeecCCCcceeEEEECCCCCceeecCC
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAE---STTLEASKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
|.+++++|-. .+|||++.|++.+|||++.-... ....-.|+.+|.+..|||++..|++-+.
T Consensus 325 ---------------I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~ 389 (498)
T KOG4328|consen 325 ---------------ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ 389 (498)
T ss_pred ---------------cceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc
Confidence 3389999965 46889999999999999764322 2345589999999999999999999999
Q ss_pred CCeEEEeeCCCCCccccCCcccccc------cceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 462 SGVVRRVKGADNSALDANGNAFDFS------MKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 462 d~~v~i~~~~~~~~~~~~~~~~~~~------~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
|..||++++..+..-......+.|. -.....+|.||.++|++|. .+.+-||.
T Consensus 390 D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 390 DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred CCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 9999996663221100000111111 1335678999999999886 44444443
No 166
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=1.4e-19 Score=164.60 Aligned_cols=270 Identities=15% Similarity=0.242 Sum_probs=201.1
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccccee
Q 010256 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (514)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (514)
.|+.++|-|||..|+.+. +..+.|||..++. .+.++++|. +.|+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~-----------------------llqtLKgHK------------DtVy 57 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGT-----------------------LLQPLKGHK------------DTVY 57 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcc-----------------------ccccccccc------------ceEE
Confidence 799999999999888775 5579999998776 447889998 9999
Q ss_pred EEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCC
Q 010256 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (514)
Q Consensus 117 ~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (514)
+++| +.||+.+++|+.|+.|.+|+.+-.-
T Consensus 58 cVAy--s~dGkrFASG~aDK~VI~W~~klEG------------------------------------------------- 86 (1081)
T KOG1538|consen 58 CVAY--AKDGKRFASGSADKSVIIWTSKLEG------------------------------------------------- 86 (1081)
T ss_pred EEEE--ccCCceeccCCCceeEEEecccccc-------------------------------------------------
Confidence 9999 7899999999999999999754211
Q ss_pred cccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCC
Q 010256 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPA 276 (514)
Q Consensus 197 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (514)
.+ ...|.+.|.|+.|+|-...|+++.=...-+|..+.. ...
T Consensus 87 ---------~L---------------------kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK-~V~-------- 127 (1081)
T KOG1538|consen 87 ---------IL---------------------KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQK-SVS-------- 127 (1081)
T ss_pred ---------ee---------------------eeccCCeeeEeecCchHHHhhhcchhhccccChhhh-hHH--------
Confidence 11 156889999999999999999985555678987632 221
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC---
Q 010256 277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--- 353 (514)
Q Consensus 277 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--- 353 (514)
-......+.+.+|..|| .+|+.|-.+|+|.+-+-. ++.. -.++. -.+.+++|.+++|+|..
T Consensus 128 -K~kss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~-gEek----~~I~R---------pgg~Nspiwsi~~~p~sg~G 191 (1081)
T KOG1538|consen 128 -KHKSSSRIICCSWTNDG-QYLALGMFNGTISIRNKN-GEEK----VKIER---------PGGSNSPIWSICWNPSSGEG 191 (1081)
T ss_pred -hhhhheeEEEeeecCCC-cEEEEeccCceEEeecCC-CCcc----eEEeC---------CCCCCCCceEEEecCCCCCC
Confidence 11235678899999999 899999999999987542 2221 11111 12234789999999953
Q ss_pred --CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 354 --RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 354 --~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
..++..+- .++.++.+. ++.+..-..-. ++-.++.+-++|+|+..|+.|+.+++|-.+
T Consensus 192 ~~di~aV~DW~qTLSFy~Ls--G~~Igk~r~L~---------------FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-- 252 (1081)
T KOG1538|consen 192 RNDILAVADWGQTLSFYQLS--GKQIGKDRALN---------------FDPCCISYFTNGEYILLGGSDKQLSLFTRD-- 252 (1081)
T ss_pred ccceEEEEeccceeEEEEec--ceeecccccCC---------------CCchhheeccCCcEEEEccCCCceEEEeec--
Confidence 34444544 667777765 33332111100 011178889999999999999999999765
Q ss_pred ceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 431 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
..+..++-....+|+.+...|++++++.|..||++.-
T Consensus 253 GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 253 GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIAC 289 (1081)
T ss_pred CeEEeeccccceeEEEEEEccCCceEEEEEccCeeeh
Confidence 3445677677889999999999999999999999976
No 167
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=7.1e-20 Score=158.62 Aligned_cols=266 Identities=16% Similarity=0.204 Sum_probs=176.5
Q ss_pred eEEEEEcC-------CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 38 ISAIEFDK-------SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 38 V~~~~~s~-------~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
-.|++|-. -|+|+|.|+.|..|.|||+.=...+-++ -.|........ ....+....-.+|.
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~-~~LGs~~sk~~-~k~~k~~~~~~gHT---------- 243 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPC-VTLGSKASKKK-KKKGKRSNSASGHT---------- 243 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccc-eeechhhhhhh-hhhcccccccccch----------
Confidence 35666643 3689999999999999998633221000 00000000000 00000111133565
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|.++.|+. .....|++|+.|.+|++||+.++++...
T Consensus 244 --davl~Ls~n~-~~~nVLaSgsaD~TV~lWD~~~g~p~~s--------------------------------------- 281 (463)
T KOG0270|consen 244 --DAVLALSWNR-NFRNVLASGSADKTVKLWDVDTGKPKSS--------------------------------------- 281 (463)
T ss_pred --HHHHHHHhcc-ccceeEEecCCCceEEEEEcCCCCccee---------------------------------------
Confidence 8899999964 3345899999999999999999875432
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCcee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
+..|.+.|.+++|+|. ..+|++| .|++|.+.|.+.....-
T Consensus 282 --------------------------------------~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~ 323 (463)
T KOG0270|consen 282 --------------------------------------ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG 323 (463)
T ss_pred --------------------------------------hhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC
Confidence 1456788999999986 6788889 89999999998533222
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
.. -...+.|-.++|.|.....+++++.||+++-+|+|+...+ +. .+..|.++|.+++
T Consensus 324 ~~--------wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~---vw------------t~~AHd~~ISgl~ 380 (463)
T KOG0270|consen 324 KE--------WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP---VW------------TLKAHDDEISGLS 380 (463)
T ss_pred ce--------EEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc---ee------------EEEeccCCcceEE
Confidence 11 1136789999999998888999999999999999986422 22 3556778999999
Q ss_pred EecCCCE-EEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC-EEEEEeCCCcEEEE
Q 010256 349 FARNGRH-ILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVF 425 (514)
Q Consensus 349 ~s~~g~~-l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw 425 (514)
+++.-.. ++++ .++.|++|++.. ..+ .....|.-....+ .|.++.|+-- .|+.|+..+.++||
T Consensus 381 ~n~~~p~~l~t~s~d~~Vklw~~~~-~~~-~~v~~~~~~~~rl------------~c~~~~~~~a~~la~GG~k~~~~vw 446 (463)
T KOG0270|consen 381 VNIQTPGLLSTASTDKVVKLWKFDV-DSP-KSVKEHSFKLGRL------------HCFALDPDVAFTLAFGGEKAVLRVW 446 (463)
T ss_pred ecCCCCcceeeccccceEEEEeecC-CCC-cccccccccccce------------eecccCCCcceEEEecCccceEEEe
Confidence 9986554 4444 459999999974 222 2222222211111 1556666544 57788888889999
Q ss_pred ecCCCce
Q 010256 426 GCSEGSA 432 (514)
Q Consensus 426 d~~~~~~ 432 (514)
|+.+...
T Consensus 447 d~~~~~~ 453 (463)
T KOG0270|consen 447 DIFTNSP 453 (463)
T ss_pred ecccChh
Confidence 9987643
No 168
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=1.7e-19 Score=147.63 Aligned_cols=256 Identities=13% Similarity=0.143 Sum_probs=176.9
Q ss_pred cccCccCeEEEEECCCCC-EEEEe-c---C----CeEEEEeccCCCceeeeeccCC-Cccc-ccCCceEEEEEecCCCcE
Q 010256 229 AHAHDYHINSISNNSDGE-TFISA-D---D----LRINLWNLEISNQSFNIVDVKP-ANME-DLTEVITSAEFHPTHCNM 297 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~~~~-~l~s~-~---d----~~i~iwd~~~~~~~~~~~~~~~-~~~~-~~~~~i~~v~~~p~~~~~ 297 (514)
+..|.+.|+.++-+|..+ .|+++ . | -.+.||.+......-....... ..+. .+-+.|.++.|.|++ ..
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns-~k 137 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS-DK 137 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC-Ce
Confidence 367789999999999654 55555 3 1 3477998874433211000000 1122 344689999999998 67
Q ss_pred EEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec--CCCEEEEEeCCeEEEEEccCCCCc
Q 010256 298 LAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR--NGRHILSRDYMTLKLWDINMDSGP 375 (514)
Q Consensus 298 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~~~~~~i~iwd~~~~~~~ 375 (514)
+++-. |..|.+|++..+..+.. .+.... -.++....++-+|+| +|..+++.+++++..||+++..+.
T Consensus 138 lasm~-dn~i~l~~l~ess~~va---ev~ss~-------s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIVA---EVLSSE-------SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKN 206 (370)
T ss_pred eEEec-cCceEEEEcccCcchhe---eecccc-------cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhh
Confidence 77655 88999999988765321 111111 112445688889998 889999999999999999983333
Q ss_pred eeeeeeccccccccccccccCCccceeeEEEcCCCC-EEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCC-C
Q 010256 376 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS-R 453 (514)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~ 453 (514)
...-..|... |..+.|+|+.+ +|+++++||.|+|||.+..+...+.+.+|.-.|+++.|+|. .
T Consensus 207 ~sI~dAHgq~---------------vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd 271 (370)
T KOG1007|consen 207 NSIEDAHGQR---------------VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD 271 (370)
T ss_pred cchhhhhcce---------------eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc
Confidence 3333445443 33899999887 47899999999999999887778999999999999999985 4
Q ss_pred CceeecCCCCeEEE-----ee-------CC--------------CCCccccCCcccccccceEEEEEcCCCCEEE-EEec
Q 010256 454 PSRPLGSLSGVVRR-----VK-------GA--------------DNSALDANGNAFDFSMKLLHLAWHPSENSIA-CAAS 506 (514)
Q Consensus 454 ~~l~s~s~d~~v~i-----~~-------~~--------------~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~-~~~~ 506 (514)
++|++||.|..|.+ .. +. ++..+-....+-+|...|++++||.-..+|. +-+.
T Consensus 272 qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY 351 (370)
T KOG1007|consen 272 QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY 351 (370)
T ss_pred eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc
Confidence 68899999999998 11 00 1111111223447999999999999988876 4455
Q ss_pred CcEEE
Q 010256 507 NSLYM 511 (514)
Q Consensus 507 ~~~~i 511 (514)
+|-.|
T Consensus 352 DGRvi 356 (370)
T KOG1007|consen 352 DGRVI 356 (370)
T ss_pred CceEE
Confidence 54444
No 169
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=5.1e-20 Score=153.40 Aligned_cols=266 Identities=15% Similarity=0.245 Sum_probs=182.0
Q ss_pred ccccceEEEEEcCC----CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccc
Q 010256 33 QEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (514)
Q Consensus 33 ~h~~~V~~~~~s~~----g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (514)
.|...-..++|+-| ..+||.|+.-|.|+|.|+.+++. ...+.+|.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~-----------------------~~~~~ghG-------- 135 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC-----------------------SKNYRGHG-------- 135 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh-----------------------ccceeccC--------
Confidence 46677788888763 35899999999999999987763 35678888
Q ss_pred cccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
..|+.|.++|.. .+++++++.|..||+|++++..+..++..
T Consensus 136 ----~sINeik~~p~~-~qlvls~SkD~svRlwnI~~~~Cv~VfGG---------------------------------- 176 (385)
T KOG1034|consen 136 ----GSINEIKFHPDR-PQLVLSASKDHSVRLWNIQTDVCVAVFGG---------------------------------- 176 (385)
T ss_pred ----ccchhhhcCCCC-CcEEEEecCCceEEEEeccCCeEEEEecc----------------------------------
Confidence 889999998744 36999999999999999999886654331
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
..+|.+.|.++.|+++|.+|+++ .|.+|++|++...+-.
T Consensus 177 ----------------------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~ 216 (385)
T KOG1034|consen 177 ----------------------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFK 216 (385)
T ss_pred ----------------------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHh
Confidence 26899999999999999999998 9999999999843211
Q ss_pred --eee-ecc---------------CC--CcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC-CCcccccccccee
Q 010256 268 --FNI-VDV---------------KP--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR-QSALCDTHSKLFE 326 (514)
Q Consensus 268 --~~~-~~~---------------~~--~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~ 326 (514)
++. +.. -| .+..-|...|-|+.|- | +++++-+-++.|..|..- -.+.. ...+
T Consensus 217 ~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pgkl~e~~----~~vk 289 (385)
T KOG1034|consen 217 NKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPGKLEESI----HNVK 289 (385)
T ss_pred hhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h-hheeecccCceEEEEecchhhhhh----hccC
Confidence 000 000 00 0223466667777775 3 588888889999999872 22111 1010
Q ss_pred ccCC-CCccceeeccccceeEEE--EecCCCEEEEEeC-CeEEEEEccCCCCc-eeeeeeccccccccccccccCCccce
Q 010256 327 EQEA-PGTRSFFTEIIASISDIK--FARNGRHILSRDY-MTLKLWDINMDSGP-VATFQVHEHLRPKLCDLYENDSIFDK 401 (514)
Q Consensus 327 ~~~~-~~~~~~~~~~~~~i~~~~--~s~~g~~l~~~~~-~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (514)
.++. ......+.-....|.-+. |.|.++.||.|.. |.|.+||++. ..+ ..+-..|..... .|
T Consensus 290 p~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~-~ep~~~ttl~~s~~~~------------tV 356 (385)
T KOG1034|consen 290 PPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDN-NEPPKCTTLTHSKSGS------------TV 356 (385)
T ss_pred CCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCC-CCCccCceEEeccccc------------ee
Confidence 0000 000011111223455554 5577899999877 9999999997 333 222222221111 13
Q ss_pred eeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 402 FECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 402 ~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
-..+|+.||.+|+...+|+.|.-||.-
T Consensus 357 RQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 357 RQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eeeeecccCcEEEEEeCCCcEEEEEee
Confidence 378999999999999999999999854
No 170
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=9e-19 Score=143.60 Aligned_cols=208 Identities=13% Similarity=0.228 Sum_probs=153.4
Q ss_pred ccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCCCc-eeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCe
Q 010256 230 HAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQ-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 230 ~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
..+..++++..|+. +.++|.++ -|-+..+||++++.. .++. .+-.|...|..|+|...+...||+.+.||.
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT------QLIAHDKEV~DIaf~~~s~~~FASvgaDGS 220 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT------QLIAHDKEVYDIAFLKGSRDVFASVGADGS 220 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee------EEEecCcceeEEEeccCccceEEEecCCCc
Confidence 34557888999986 46677777 799999999997622 1111 456799999999999987789999999999
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC-CCEEEE-EeC-CeEEEEEccCCCCceeeeeecc
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILS-RDY-MTLKLWDINMDSGPVATFQVHE 383 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~-~~~-~~i~iwd~~~~~~~~~~~~~~~ 383 (514)
+|+||+|...-- .-.++.++. ..+...++|++. -+++|+ +-+ ..|.|.|++.+..++.++.+|.
T Consensus 221 vRmFDLR~leHS---TIIYE~p~~----------~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~ 287 (364)
T KOG0290|consen 221 VRMFDLRSLEHS---TIIYEDPSP----------STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQ 287 (364)
T ss_pred EEEEEecccccc---eEEecCCCC----------CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCc
Confidence 999999975421 222333221 246788999874 456666 445 8999999999999999999999
Q ss_pred ccccccccccccCCccceeeEEEcCCC-CEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCC
Q 010256 384 HLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d 462 (514)
..++ .++|.|.. ..|+++++|..+.|||+.+.-.. .-.++ .|+
T Consensus 288 a~VN---------------gIaWaPhS~~hictaGDD~qaliWDl~q~~~~-----~~~dP-----------ila----- 331 (364)
T KOG0290|consen 288 ASVN---------------GIAWAPHSSSHICTAGDDCQALIWDLQQMPRE-----NGEDP-----------ILA----- 331 (364)
T ss_pred cccc---------------ceEecCCCCceeeecCCcceEEEEeccccccc-----CCCCc-----------hhh-----
Confidence 8754 89999965 57999999999999999854210 00011 000
Q ss_pred CeEEEeeCCCCCccccCCcccccccceEEEEEcCC-CCEEEEEecCcEEEE
Q 010256 463 GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPS-ENSIACAASNSLYMY 512 (514)
Q Consensus 463 ~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-~~~l~~~~~~~~~i~ 512 (514)
+...++|+.++|+|. ..+|+++..+.+-+.
T Consensus 332 --------------------y~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 332 --------------------YTAGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred --------------------hhccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 013688999999964 789999988877654
No 171
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.2e-20 Score=182.08 Aligned_cols=277 Identities=16% Similarity=0.255 Sum_probs=200.5
Q ss_pred ccccccchhhccccCcccccccccceEEEEEcCCCCe----EEEecCCCeEEEEEecCCcccCCcccccccccccccCCc
Q 010256 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDH----LATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHP 88 (514)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~----l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (514)
+..+.+|...-++..+...++-...-+.++|.+.|.. ||.|..||.|.+||...-.. ..
T Consensus 42 Eifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-----------------~~ 104 (1049)
T KOG0307|consen 42 EIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-----------------NA 104 (1049)
T ss_pred ceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc-----------------Cc
Confidence 3344444443333344445566788899999998876 88899999999999764210 01
Q ss_pred cceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCccee
Q 010256 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (514)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 168 (514)
+...+..+..|+ +.|..+.|++.. +..|++|+.||.|.|||+.+-+.
T Consensus 105 ~~~~la~~~~h~------------G~V~gLDfN~~q-~nlLASGa~~geI~iWDlnn~~t-------------------- 151 (1049)
T KOG0307|consen 105 SEEVLATKSKHT------------GPVLGLDFNPFQ-GNLLASGADDGEILIWDLNKPET-------------------- 151 (1049)
T ss_pred chHHHhhhcccC------------CceeeeeccccC-CceeeccCCCCcEEEeccCCcCC--------------------
Confidence 223455667777 899999997643 45999999999999999986421
Q ss_pred cccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCE
Q 010256 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GET 247 (514)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~ 247 (514)
.+++.+ ....+.|.+++|+.. ...
T Consensus 152 ---------P~~~~~----------------------------------------------~~~~~eI~~lsWNrkvqhI 176 (1049)
T KOG0307|consen 152 ---------PFTPGS----------------------------------------------QAPPSEIKCLSWNRKVSHI 176 (1049)
T ss_pred ---------CCCCCC----------------------------------------------CCCcccceEeccchhhhHH
Confidence 000000 122367899999876 556
Q ss_pred EEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC---eEEEEEcCCCcccccccc
Q 010256 248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSK 323 (514)
Q Consensus 248 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~ 323 (514)
|+++ .+|.+.|||++..+..+++ ........+..++|+|++...+++++.|. .|.+||+|.-... .+
T Consensus 177 LAS~s~sg~~~iWDlr~~~pii~l------s~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP---~k 247 (1049)
T KOG0307|consen 177 LASGSPSGRAVIWDLRKKKPIIKL------SDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP---LK 247 (1049)
T ss_pred hhccCCCCCceeccccCCCccccc------ccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc---hh
Confidence 7777 8999999999977666543 22222345789999999978888888765 5999999875432 33
Q ss_pred ceeccCCCCccceeeccccceeEEEEecCC-CEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccce
Q 010256 324 LFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (514)
.+++|...|.++.|++.+ ++|+++ .|++|.+|+.++ ++.+..+.....+ +
T Consensus 248 ------------~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t-gEvl~~~p~~~nW---------------~ 299 (1049)
T KOG0307|consen 248 ------------ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT-GEVLGELPAQGNW---------------C 299 (1049)
T ss_pred ------------hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC-ceEeeecCCCCcc---------------e
Confidence 345666899999999966 777774 569999999998 8888888765444 3
Q ss_pred eeEEEcCCCC-EEEEEeCCCcEEEEecCCCc
Q 010256 402 FECCLSGDGG-RVATGSYSNLFRVFGCSEGS 431 (514)
Q Consensus 402 ~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~ 431 (514)
+.+.|.|..- .++.++-||.|.||.+....
T Consensus 300 fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 300 FDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 4899999765 78888999999999998653
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4.6e-18 Score=135.91 Aligned_cols=299 Identities=13% Similarity=0.137 Sum_probs=194.8
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
..|-+-+++|.+++|+.|..+|.|.+..+..--.. .+..|....+..+++|+ .+|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~-------------sa~~~gk~~iv~eqahd------------gpi 65 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG-------------SAEPPGKLKIVPEQAHD------------GPI 65 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc-------------ccCCCCCcceeeccccC------------CCe
Confidence 34667789999999999999999999998643221 11223333445568898 999
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
+.++|. . .+|++++ ||.|+=|.........
T Consensus 66 y~~~f~--d--~~Lls~g-dG~V~gw~W~E~~es~--------------------------------------------- 95 (325)
T KOG0649|consen 66 YYLAFH--D--DFLLSGG-DGLVYGWEWNEEEESL--------------------------------------------- 95 (325)
T ss_pred eeeeee--h--hheeecc-CceEEEeeehhhhhhc---------------------------------------------
Confidence 999994 2 3566665 4999999876543100
Q ss_pred CcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccC
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~ 274 (514)
+.-++|. ... +.+.- ...-..|+++...|..+-++.+ .|+.++.||+++++...
T Consensus 96 ---------~~K~lwe----~~~-----P~~~~-~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r------ 150 (325)
T KOG0649|consen 96 ---------ATKRLWE----VKI-----PMQVD-AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR------ 150 (325)
T ss_pred ---------cchhhhh----hcC-----ccccC-cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE------
Confidence 0111121 100 00000 1112568999999886665555 99999999999776543
Q ss_pred CCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccc-cceeEEEEecCC
Q 010256 275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARNG 353 (514)
Q Consensus 275 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~g 353 (514)
.+.+|.+.+.+++--... ..+++|++||++|+||.++++.. ++++....+ ..+..|. ..|.+++-+ .
T Consensus 151 --~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v----~~ie~yk~~---~~lRp~~g~wigala~~--e 218 (325)
T KOG0649|consen 151 --EYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHV----SMIEPYKNP---NLLRPDWGKWIGALAVN--E 218 (325)
T ss_pred --EEcCCcceeeeeeecccC-cceeecCCCccEEEEecccccee----EEeccccCh---hhcCcccCceeEEEecc--C
Confidence 678999999999985544 57899999999999999998863 333332221 1123232 357777765 5
Q ss_pred CEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 354 RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 354 ~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
.++++|....+.+|+++. .++..++...... ..+.|- ...+++++..+.|.-|.+. ..+
T Consensus 219 dWlvCGgGp~lslwhLrs-se~t~vfpipa~v----------------~~v~F~--~d~vl~~G~g~~v~~~~l~--Gvl 277 (325)
T KOG0649|consen 219 DWLVCGGGPKLSLWHLRS-SESTCVFPIPARV----------------HLVDFV--DDCVLIGGEGNHVQSYTLN--GVL 277 (325)
T ss_pred ceEEecCCCceeEEeccC-CCceEEEecccce----------------eEeeee--cceEEEeccccceeeeeec--cEE
Confidence 699999888999999997 7777777654432 146664 4567778888899999876 233
Q ss_pred eeeecCCCcceeEEEEC-CCCCceeecCCCCeEEE
Q 010256 434 STTLEASKNPMRRQVQT-PSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 434 ~~~~~~~~~~v~~~~~~-~~~~~l~s~s~d~~v~i 467 (514)
...........+...++ ..-++|..++..+.+.+
T Consensus 278 ~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i 312 (325)
T KOG0649|consen 278 QANIPVESTACYSASWQTSPIKFISIAGFSNKLHI 312 (325)
T ss_pred EEeccCCccceeeecccCCceEEEEecccceeeee
Confidence 33444333333344332 22456666666666666
No 173
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=4.1e-19 Score=153.94 Aligned_cols=197 Identities=16% Similarity=0.276 Sum_probs=150.6
Q ss_pred ccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010256 230 HAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 307 (514)
.+|+..|.+++|+.. .+.|++| .|.+|++||+.+++... ++..|...|.++.|+|..+.+|++|+.|+++
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~--------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V 311 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS--------SITHHGKKVQTLEWHPYEPSVLLSGSYDGTV 311 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce--------ehhhcCCceeEEEecCCCceEEEeccccceE
Confidence 689999999999876 6678888 89999999999877553 4567899999999999998999999999999
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCE-EEEEe-CCeEEEEEccCCCCceeeeeecccc
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH-ILSRD-YMTLKLWDINMDSGPVATFQVHEHL 385 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~ 385 (514)
.+.|.|..... -+.|+. .+.|-.++|.|.... ++++. +|+|+-+|++.+++++.+++.|...
T Consensus 312 ~l~D~R~~~~s---~~~wk~-------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ 375 (463)
T KOG0270|consen 312 ALKDCRDPSNS---GKEWKF-------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDE 375 (463)
T ss_pred EeeeccCcccc---CceEEe-------------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCC
Confidence 99999952221 122222 157899999996654 33454 4999999999988999999999987
Q ss_pred ccccccccccCCccceeeEEEcCC-CCEEEEEeCCCcEEEEecCCCceeeeeecCCC---cceeEEEECCCCC-ceeecC
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAESTTLEASK---NPMRRQVQTPSRP-SRPLGS 460 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~-~l~s~s 460 (514)
+. ++++++. ..+|++++.|+.|++|++..... .....|. +...++++.|+-. ++|.|+
T Consensus 376 IS---------------gl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~--~~v~~~~~~~~rl~c~~~~~~~a~~la~GG 438 (463)
T KOG0270|consen 376 IS---------------GLSVNIQTPGLLSTASTDKVVKLWKFDVDSP--KSVKEHSFKLGRLHCFALDPDVAFTLAFGG 438 (463)
T ss_pred cc---------------eEEecCCCCcceeeccccceEEEEeecCCCC--cccccccccccceeecccCCCcceEEEecC
Confidence 54 7888764 45788999999999999875432 1222222 2344556666655 577787
Q ss_pred CCCeEEE
Q 010256 461 LSGVVRR 467 (514)
Q Consensus 461 ~d~~v~i 467 (514)
..+.+++
T Consensus 439 ~k~~~~v 445 (463)
T KOG0270|consen 439 EKAVLRV 445 (463)
T ss_pred ccceEEE
Confidence 7777777
No 174
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=3.8e-19 Score=157.71 Aligned_cols=205 Identities=16% Similarity=0.235 Sum_probs=159.2
Q ss_pred EEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccce
Q 010256 247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (514)
Q Consensus 247 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 325 (514)
.|+.+ .||.+.+.+-. ++.. .....|.+.+.+-.|+|+| .-|+++++||.|++|.- +|-+. .+
T Consensus 77 ~~~i~s~DGkf~il~k~-~rVE--------~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSr-sGMLR----St- 140 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKS-ARVE--------RSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSR-SGMLR----ST- 140 (737)
T ss_pred eEEEEcCCceEEEeccc-chhh--------hhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEec-cchHH----HH-
Confidence 44445 89998887754 2222 1457799999999999999 89999999999999984 44331 11
Q ss_pred eccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEE
Q 010256 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (514)
+.....+|.|++|.|+..-++-+..+.+.|=-+.. ...+-..+.|.+. |.++.
T Consensus 141 -----------l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~-n~k~i~WkAHDGi---------------iL~~~ 193 (737)
T KOG1524|consen 141 -----------VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAA-NSKIIRWRAHDGL---------------VLSLS 193 (737)
T ss_pred -----------HhhcCceeEEEEECCCCCceEEecCCeEEEeeccc-ccceeEEeccCcE---------------EEEee
Confidence 11122589999999998888877667788877775 5566678889887 45999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccccc
Q 010256 406 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF 485 (514)
Q Consensus 406 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~ 485 (514)
|++..+++++|+.|-+.+|||.. ......-..|..+|++++|.|+ +..+.+|. .+.|+ .++.
T Consensus 194 W~~~s~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~---~~p~----------- 255 (737)
T KOG1524|consen 194 WSTQSNIIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF---SSPR----------- 255 (737)
T ss_pred cCccccceeecCCceeEEeeccc--CcccccCChhccceeeeeeccc-cceeeeee-eeeee---cCCC-----------
Confidence 99999999999999999999976 3444677789999999999999 66666653 34454 2222
Q ss_pred ccceEEEEEcCCCCEEEEEecCcEEEE
Q 010256 486 SMKLLHLAWHPSENSIACAASNSLYMY 512 (514)
Q Consensus 486 ~~~v~~~~~spd~~~l~~~~~~~~~i~ 512 (514)
.+.|..++|||||+.+++|+..+..++
T Consensus 256 ~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 256 VGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ccceEEEEEcCCCceeeccccCceEEE
Confidence 689999999999999999998887765
No 175
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.84 E-value=4.8e-19 Score=143.17 Aligned_cols=300 Identities=10% Similarity=0.138 Sum_probs=192.4
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
+|.+.|+|+.|-.++ +|.+|..-|.|.+|.+.+.+.. ..+++|. .
T Consensus 12 p~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~-----------------------~~~r~~g-----------~ 56 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDL-----------------------PLIRLFG-----------R 56 (323)
T ss_pred cccchheehhhccch-hhhcccccceEEEEEeecCccc-----------------------hhhhhhc-----------c
Confidence 789999999999877 4889999999999999887743 2344222 1
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc-ccc--
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG-ERN-- 189 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~~-- 189 (514)
..|+.+.-.|. ..+.+-+.|..+.+|++..+....+.....+. .+.-..++.+.++.. +..
T Consensus 57 ~~it~lq~~p~---d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~ns-------------lgFCrfSl~~~~k~~eqll~y 120 (323)
T KOG0322|consen 57 LFITNLQSIPN---DSLDTQGRDPLLILWTIAYSAFISIHSIVVNS-------------LGFCRFSLVKKPKNSEQLLEY 120 (323)
T ss_pred ceeeceeecCC---cchhhcCCCceEEEEEccCcceEEEeeeeccc-------------cccccceeccCCCcchhheec
Confidence 55777776442 47889999999999999886654443322111 000011222332221 000
Q ss_pred cCCCCCCcc-cCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CC--EEEEe-cCCeEEEEeccCC
Q 010256 190 FGCASNDSS-FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GE--TFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 190 ~~~~~~~~~-~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~--~l~s~-~d~~i~iwd~~~~ 264 (514)
....+.... --++..-.+++-+ . -..+..+.+.+..+..+ +. ++++| ++|.+.+||+.++
T Consensus 121 p~rgsde~h~~D~g~~tqv~i~d----d-----------~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~ 185 (323)
T KOG0322|consen 121 PSRGSDETHKQDGGDTTQVQIAD----D-----------SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTG 185 (323)
T ss_pred CCcccchhhhhccCccceeEccC----c-----------hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCC
Confidence 000000000 0011111222211 0 01234466777765332 33 34567 8999999999976
Q ss_pred CceeeeeccCC--CcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccc
Q 010256 265 NQSFNIVDVKP--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 265 ~~~~~~~~~~~--~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
...+.+....+ .....|..+|.++.|.+.- ..=++|+.+..+..|.+.......+ +... +.-...
T Consensus 186 ~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq-~~~e-----------~~lknp 252 (323)
T KOG0322|consen 186 DKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQ-IRKE-----------ITLKNP 252 (323)
T ss_pred ceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCccc-ccce-----------EEecCC
Confidence 44333211111 2345688999999998765 5667788888999998865321111 1111 111114
Q ss_pred ceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCc
Q 010256 343 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 421 (514)
.|..+.+-||++.+|+++ |++||||+.++ ..++..++.|...+ .+++|+|+.+++|+++.|++
T Consensus 253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLkyHsagv---------------n~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGV---------------NAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred CccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhhhhcce---------------eEEEeCCCCchhhhccCCce
Confidence 688899999999999965 69999999998 99999999998653 39999999999999999999
Q ss_pred EEEEec
Q 010256 422 FRVFGC 427 (514)
Q Consensus 422 i~iwd~ 427 (514)
|.+|++
T Consensus 317 ISLWkL 322 (323)
T KOG0322|consen 317 ISLWKL 322 (323)
T ss_pred EEeeec
Confidence 999986
No 176
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1.8e-18 Score=165.30 Aligned_cols=310 Identities=15% Similarity=0.224 Sum_probs=205.7
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccccee
Q 010256 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (514)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (514)
.-..+.|+|-...+++++..-.|+|||.+.++.. ..|..+.+ ....|+
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l-----------------------~~F~n~~~---------~~t~Vs 1113 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL-----------------------NGFDNGAF---------PDTRVS 1113 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCcee-----------------------ccccCCCC---------CCCccc
Confidence 4567899998888999887779999999877642 22332221 126799
Q ss_pred EEEEeeCCCCcEEEEeeCCCeEEEEEcCcc---EEEEEeeccCC-CccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEK---KVKKVFDWNVH-PEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 117 ~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~---~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
.+.+....|..++++|+.||.||||+-... +...+.....- .....+.+.- .-+.|-.....|
T Consensus 1114 ~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~-------~v~dWqQ~~G~L------ 1180 (1387)
T KOG1517|consen 1114 DLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTG-------LVVDWQQQSGHL------ 1180 (1387)
T ss_pred eeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCC-------eeeehhhhCCeE------
Confidence 999988888889999999999999974322 22211111100 0000000000 134555555555
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
+++++...|+||| ... |. .......+....|+++.-+. .|+.+++| .||.|++||.+.......+
T Consensus 1181 ------l~tGd~r~IRIWD-a~~-E~-----~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v 1247 (1387)
T KOG1517|consen 1181 ------LVTGDVRSIRIWD-AHK-EQ-----VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV 1247 (1387)
T ss_pred ------EecCCeeEEEEEe-ccc-ce-----eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc
Confidence 6777789999999 222 11 11111133445566665443 47999999 9999999999866542111
Q ss_pred eccCCCcccccCCc--eEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 271 VDVKPANMEDLTEV--ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 271 ~~~~~~~~~~~~~~--i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
.....|... |..+.+.+.|-..|++|+.+|.|++||+|.... .. ......+.. ..+..+++.
T Consensus 1248 -----~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~-~~~iv~~~~---------yGs~lTal~ 1311 (1387)
T KOG1517|consen 1248 -----CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ET-FLTIVAHWE---------YGSALTALT 1311 (1387)
T ss_pred -----eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cc-cceeeeccc---------cCccceeee
Confidence 134556666 999999998744699999999999999998521 11 111111110 112589999
Q ss_pred EecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 349 FARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 349 ~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
.+++...+|+|+.+.|+||++. ++.+..+..+... ....+..+.+++|+|-.-+||+|+.|..|.||...
T Consensus 1312 VH~hapiiAsGs~q~ikIy~~~--G~~l~~~k~n~~F--------~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1312 VHEHAPIIASGSAQLIKIYSLS--GEQLNIIKYNPGF--------MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred eccCCCeeeecCcceEEEEecC--hhhhcccccCccc--------ccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 9999999999988999999997 6666666644332 22344455699999999999999999999999876
Q ss_pred CC
Q 010256 429 EG 430 (514)
Q Consensus 429 ~~ 430 (514)
..
T Consensus 1382 k~ 1383 (1387)
T KOG1517|consen 1382 KP 1383 (1387)
T ss_pred Cc
Confidence 54
No 177
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=3.1e-19 Score=156.78 Aligned_cols=287 Identities=12% Similarity=0.152 Sum_probs=195.8
Q ss_pred cccccchhhccccCcccccccccceEEEEEcCCCCeEEEe--cCCCeEEEEEecCCcccCCcccccccccccccCCccce
Q 010256 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATG--DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (514)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (514)
...|+++..-+...-.+... .-.+.+++|+.... |+++ +.|..+++|.-... . |+..
T Consensus 14 ~kl~D~s~~~~~~~~~~~t~-~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~-~------------------~~Vp 72 (673)
T KOG4378|consen 14 TKLSDFSDLETKSEYVHQTA-EPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK-T------------------PEVP 72 (673)
T ss_pred eEEeecccccCccccccCCC-CCcceeeeccccce-EEEeecCCceeEEEecccCC-C------------------Cccc
Confidence 45688877533322222221 22499999998664 4444 45678888885432 1 2222
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
......+.. ...|.++.++ .++++|+..+.|+|||++...+.+....+. ..|.
T Consensus 73 ~~~k~~gd~-----------~~Cv~~~s~S-----~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~--------stvt--- 125 (673)
T KOG4378|consen 73 RVRKLTGDN-----------AFCVACASQS-----LYEISGGQSGCVKIWDLRAKLIHRFLKDHQ--------STVT--- 125 (673)
T ss_pred eeeccccch-----------HHHHhhhhcc-----eeeeccCcCceeeehhhHHHHHhhhccCCc--------ceeE---
Confidence 333333332 1445555552 589999999999999999665544444331 2333
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEE-
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS- 250 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s- 250 (514)
.+.+.....++ ++++..|.|.+.. +.... ....|..+....|+-+.|+|..+.+++
T Consensus 126 ----~v~YN~~Deyi------------Asvs~gGdiiih~-~~t~~------~tt~f~~~sgqsvRll~ys~skr~lL~~ 182 (673)
T KOG4378|consen 126 ----YVDYNNTDEYI------------ASVSDGGDIIIHG-TKTKQ------KTTTFTIDSGQSVRLLRYSPSKRFLLSI 182 (673)
T ss_pred ----EEEecCCccee------------EEeccCCcEEEEe-cccCc------cccceecCCCCeEEEeecccccceeeEe
Confidence 55666666666 8899999998766 22211 112222333456778999998777665
Q ss_pred e-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccC
Q 010256 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (514)
Q Consensus 251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 329 (514)
+ ++|.|.+||+....+.+. -.+.|..+...|+|+|..+.+|++.+.|..|.+||++..+.... +.
T Consensus 183 asd~G~VtlwDv~g~sp~~~-------~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~----l~--- 248 (673)
T KOG4378|consen 183 ASDKGAVTLWDVQGMSPIFH-------ASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDR----LT--- 248 (673)
T ss_pred eccCCeEEEEeccCCCcccc-------hhhhccCCcCcceecCCccceEEEecccceEEEeecccccccce----ee---
Confidence 4 899999999985444432 35679999999999999888999999999999999987654322 11
Q ss_pred CCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC
Q 010256 330 APGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (514)
Q Consensus 330 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (514)
...+...++|+++|.+|++|.. |.|..||++....++.++..|... |++++|-|
T Consensus 249 ----------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s---------------Vt~vafq~ 303 (673)
T KOG4378|consen 249 ----------YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS---------------VTRVAFQP 303 (673)
T ss_pred ----------ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccc---------------eeEEEeee
Confidence 1147899999999999999976 999999999877889999888765 44788766
Q ss_pred CC
Q 010256 409 DG 410 (514)
Q Consensus 409 ~~ 410 (514)
..
T Consensus 304 s~ 305 (673)
T KOG4378|consen 304 SP 305 (673)
T ss_pred cc
Confidence 53
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=3.1e-19 Score=159.43 Aligned_cols=273 Identities=15% Similarity=0.176 Sum_probs=189.5
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
...|.+.|+.++|.|....|++++.||.|.+|+++..... -..+...+.+|.+|.
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s---------------~~~~~epi~tfraH~---------- 344 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS---------------AEKDVEPILTFRAHE---------- 344 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc---------------cccceeeeEEEeccc----------
Confidence 4578999999999999999999999999999999432211 112445677899999
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
++|.|++. ..++..+++|+-||+|+.|++.... . |+...
T Consensus 345 --gPVl~v~v--~~n~~~~ysgg~Dg~I~~w~~p~n~-d-------------------------------p~ds~----- 383 (577)
T KOG0642|consen 345 --GPVLCVVV--PSNGEHCYSGGIDGTIRCWNLPPNQ-D-------------------------------PDDSY----- 383 (577)
T ss_pred --CceEEEEe--cCCceEEEeeccCceeeeeccCCCC-C-------------------------------ccccc-----
Confidence 99999999 6788899999999999999986221 0 00000
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
| .......+.||.+.|+.+++++....|+++ .||++++|+...... .
T Consensus 384 --------------------d----------p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~--~ 431 (577)
T KOG0642|consen 384 --------------------D----------PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP--C 431 (577)
T ss_pred --------------------C----------cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc--c
Confidence 0 000111247999999999999999999999 999999999874433 1
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
++ .-....+...++++-.......++...-+.-.++++..... .+.++....+.++. ...+..+.+
T Consensus 432 ~f-----~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~----~~~~~s~~~~~~~~-----~~~in~vVs 497 (577)
T KOG0642|consen 432 TF-----GEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD----LLIFESSASPGPRR-----YPQINKVVS 497 (577)
T ss_pred cc-----CCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh----eeeccccCCCcccc-----cCccceEEe
Confidence 11 11112334456666544312222222223333334433322 33343333222211 135778889
Q ss_pred ecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+|.+.+.+++. ++.|+++|..+ ++++.....|.... +++++.|+|-+|++++.||++++|.+.
T Consensus 498 ~~~~~~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~sv---------------tslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 498 HPTADITFTAHEDRSIRFFDNKT-GKILHSMVAHKDSV---------------TSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred cCCCCeeEecccCCceecccccc-cccchheeecccee---------------cceeecCCCceEEeecCCceeehhhcc
Confidence 99998888875 49999999998 99999988887653 499999999999999999999999987
Q ss_pred CCc
Q 010256 429 EGS 431 (514)
Q Consensus 429 ~~~ 431 (514)
...
T Consensus 562 ~k~ 564 (577)
T KOG0642|consen 562 VKT 564 (577)
T ss_pred chh
Confidence 543
No 179
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=3.2e-18 Score=140.29 Aligned_cols=229 Identities=17% Similarity=0.224 Sum_probs=165.2
Q ss_pred cEEeceeeccccc--cccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCC
Q 010256 206 SLRLPVVVTSQET--NLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTE 283 (514)
Q Consensus 206 ~i~i~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 283 (514)
...||.+....+. ..+.++...+-..+-+.|.|+.|.|++..+++-.|..|.+|+++........+.. ..-.++..
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~s--s~s~e~~~ 171 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLS--SESAEMRH 171 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecc--cccccccc
Confidence 4567773322222 1122333333345667999999999999999889999999999866553222111 11223567
Q ss_pred ceEEEEEecC-CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEE-EEeC
Q 010256 284 VITSAEFHPT-HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL-SRDY 361 (514)
Q Consensus 284 ~i~~v~~~p~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-~~~~ 361 (514)
..++-+|+|. .++.++ ...|+++..||+|+.... ..+ -..|...+..+.|+|+.++++ +++|
T Consensus 172 ~ftsg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~----~sI-----------~dAHgq~vrdlDfNpnkq~~lvt~gD 235 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKN----NSI-----------EDAHGQRVRDLDFNPNKQHILVTCGD 235 (370)
T ss_pred eecccccCCCCccceEE-EeCCCcEEEEEccchhhh----cch-----------hhhhcceeeeccCCCCceEEEEEcCC
Confidence 7889999993 225555 456899999999986542 111 244667899999999877654 5555
Q ss_pred -CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC-CEEEEEeCCCcEEEEecCCCc--------
Q 010256 362 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGS-------- 431 (514)
Q Consensus 362 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~-------- 431 (514)
|.|+|||.+....++.++.+|.+. |+++.|+|.- ++|.+|+.|..|.+|...+-.
T Consensus 236 dgyvriWD~R~tk~pv~el~~HsHW---------------vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~ 300 (370)
T KOG1007|consen 236 DGYVRIWDTRKTKFPVQELPGHSHW---------------VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFE 300 (370)
T ss_pred CccEEEEeccCCCccccccCCCceE---------------EEEEEecCccceEEEecCCCceeEEEeccccccccccccc
Confidence 999999999888899999999987 6699999964 577799999999999864321
Q ss_pred ----------------e----eeeeecCCCcceeEEEECCCCCc-eeecCCCCeEEE
Q 010256 432 ----------------A----ESTTLEASKNPMRRQVQTPSRPS-RPLGSLSGVVRR 467 (514)
Q Consensus 432 ----------------~----~~~~~~~~~~~v~~~~~~~~~~~-l~s~s~d~~v~i 467 (514)
. .+.++..|.+.|++++|+...++ +|+-|-||.+.|
T Consensus 301 ~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 301 DDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred cccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 0 12366689999999999988776 578899998888
No 180
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=1e-15 Score=148.00 Aligned_cols=367 Identities=21% Similarity=0.336 Sum_probs=246.8
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
...|...|.++.|.+.+..++.++.|+.+.+|+...... ....+.++..
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~~~~~~--------- 109 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK----------------------LIKSLEGLHD--------- 109 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce----------------------eEEEEeccCC---------
Confidence 458899999999999999999999999999999875541 2233444220
Q ss_pred cccceeEEEEeeCCCCc-EEEEeeC-CCeEEEEEcCc-cEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 111 IEEKINKIRWCQSANSA-LYLLSTN-DKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~-~l~s~~~-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
..+..+.+. .+++. +++..+. |+.+++|++.. .........+ ...+. .+.++|+++.+
T Consensus 110 --~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--------~~~v~-------~~~~~~~~~~~- 170 (466)
T COG2319 110 --SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGH--------SESVT-------SLAFSPDGKLL- 170 (466)
T ss_pred --CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecC--------cccEE-------EEEECCCCCEE-
Confidence 246777775 55555 4454444 99999999997 5444444443 12333 68899999866
Q ss_pred cccCCCCCCcccCCCC-CCcEEeceeeccccccccccccccccccCccCeEEEEECCCCC-EEEEe-cCCeEEEEeccCC
Q 010256 188 RNFGCASNDSSFPPGG-VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~ 264 (514)
+.++. ++.+++|+ ... ...... +.+|...|.+++|+|++. .++++ .|+.|++||....
T Consensus 171 -----------~~~~~~~~~~~~~~-~~~------~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~ 231 (466)
T COG2319 171 -----------ASGSSLDGTIKLWD-LRT------GKPLST-LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231 (466)
T ss_pred -----------EecCCCCCceEEEE-cCC------CceEEe-eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC
Confidence 77765 99999999 322 111222 256899999999999998 66664 8999999987733
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
..... .+..|.... ...|+|++ .++++++.|+.+++|+++..... ... +.+|...+
T Consensus 232 ~~~~~-------~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~---~~~------------~~~~~~~v 287 (466)
T COG2319 232 KLLRS-------TLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSL---LRT------------LSGHSSSV 287 (466)
T ss_pred cEEee-------ecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcE---EEE------------EecCCccE
Confidence 32221 245566554 33899998 78899999999999999875531 111 13345789
Q ss_pred eEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeee--eccccccccccccccCCccceeeEEEcCCCCEEEEE-eCCC
Q 010256 345 SDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQ--VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSN 420 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg 420 (514)
.++.|+|++..+++++ ++.+.+||... ........ .|... +..+.|.+++..++.+ ..|+
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~d~ 351 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLET-GKLLSSLTLKGHEGP---------------VSSLSFSPDGSLLVSGGSDDG 351 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCC-CceEEEeeecccCCc---------------eEEEEECCCCCEEEEeecCCC
Confidence 9999999888888864 47899998876 44444443 33321 2367774343556555 6889
Q ss_pred cEEEEecCCCceeeeeecCCCcceeEEEECCCCCceee-cCCCCeEEEeeCCCCCccccCCcccccc-cceEEEEEcCCC
Q 010256 421 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL-GSLSGVVRRVKGADNSALDANGNAFDFS-MKLLHLAWHPSE 498 (514)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~s~d~~v~i~~~~~~~~~~~~~~~~~~~-~~v~~~~~spd~ 498 (514)
.+.+|+..... ......... .+..+.+.+ ...... +..++.+.+.+..... ... ..... ..+....+++++
T Consensus 352 ~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~ 424 (466)
T COG2319 352 TIRLWDLRTGK-PLKTLEGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGS---LLR-NLDGHTSRVTSLDFSPDG 424 (466)
T ss_pred cEEeeecCCCc-eeEEecCCc-eEEEEEECC-CCCEEEEecCCCceEEEecccCe---eee-eccCCCCcEEEEEECCCC
Confidence 99999998765 222222222 277888888 544444 6888888883222211 111 11112 788999999999
Q ss_pred CEEEEEe-cCcEEEEe
Q 010256 499 NSIACAA-SNSLYMYY 513 (514)
Q Consensus 499 ~~l~~~~-~~~~~i~~ 513 (514)
..++.++ +..+.+|.
T Consensus 425 ~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 425 KSLASGSSDNTIRLWD 440 (466)
T ss_pred cEEEEecCCCcEEEEe
Confidence 9998744 66666664
No 181
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=1.9e-19 Score=167.70 Aligned_cols=276 Identities=14% Similarity=0.197 Sum_probs=207.8
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|.|+.|...|.++++|+.|..++||..+++. .+....||.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-----------------------~lAs~rGhs---------- 232 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-----------------------CLASCRGHS---------- 232 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchh-----------------------hhccCCCCc----------
Confidence 45899999999999999999999999999999988776 457789998
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|+.++. +.+..++++++.|..|++|.+..+..+.
T Consensus 233 --~ditdlav--s~~n~~iaaaS~D~vIrvWrl~~~~pvs---------------------------------------- 268 (1113)
T KOG0644|consen 233 --GDITDLAV--SSNNTMIAAASNDKVIRVWRLPDGAPVS---------------------------------------- 268 (1113)
T ss_pred --cccchhcc--chhhhhhhhcccCceEEEEecCCCchHH----------------------------------------
Confidence 88999998 5566788899999999999998765211
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~ 270 (514)
.+.+|++.|++++|+|-. .+++||++++||.+ -. ..+
T Consensus 269 -------------------------------------vLrghtgavtaiafsP~~---sss~dgt~~~wd~r-~~--~~~ 305 (1113)
T KOG0644|consen 269 -------------------------------------VLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR-LE--PRI 305 (1113)
T ss_pred -------------------------------------HHhccccceeeeccCccc---cCCCCCceEecccc-cc--ccc
Confidence 147999999999999976 44499999999987 11 111
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
....|..+. ....+-++.|-..+ ..+++++.|+.-..|.+..-.. +...+.-+.++
T Consensus 306 y~prp~~~~-~~~~~~s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~~----------------------~~~~lif~t~s 361 (1113)
T KOG0644|consen 306 YVPRPLKFT-EKDLVDSILFENNG-DRFLTGSRDGEARNHEFEQLAW----------------------RSNLLIFVTRS 361 (1113)
T ss_pred cCCCCCCcc-cccceeeeeccccc-cccccccCCcccccchhhHhhh----------------------hccceEEEecc
Confidence 112222332 23567778888887 7899999999988887754221 00112222222
Q ss_pred cCC-CEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC-EEEEEeCCCcEEEEec
Q 010256 351 RNG-RHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFGC 427 (514)
Q Consensus 351 ~~g-~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~ 427 (514)
.+- .+.+++ .+..+++|++.. +..++.+.+|.... +.+.++|-.. ...+++.||...|||+
T Consensus 362 sd~~~~~~~ar~~~~~~vwnl~~-g~l~H~l~ghsd~~---------------yvLd~Hpfn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 362 SDLSSIVVTARNDHRLCVWNLYT-GQLLHNLMGHSDEV---------------YVLDVHPFNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred ccccccceeeeeeeEeeeeeccc-chhhhhhcccccce---------------eeeeecCCCcHhhhhccCCCceEeeec
Confidence 222 344444 558899999997 88888888888763 3788998554 4558999999999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
-.+.+......+| ..+..-.|+++|..++....-|.+.|
T Consensus 426 ~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i 464 (1113)
T KOG0644|consen 426 WEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYI 464 (1113)
T ss_pred ccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEE
Confidence 9887766666665 44557789999999988888888888
No 182
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6e-18 Score=144.49 Aligned_cols=299 Identities=15% Similarity=0.126 Sum_probs=201.8
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|+++.| +.++++|++|+.|..+++|++..--..++
T Consensus 57 GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k~----------------------------------------- 93 (609)
T KOG4227|consen 57 GCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRKT----------------------------------------- 93 (609)
T ss_pred cccceeee--ccCCeEEeecCCcceeeeechHHHHhhcC-----------------------------------------
Confidence 99999999 56789999999999999999875321111
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
.++....-..|...|.|++|+..+..+.+| .+++|.+.|+++.+.....
T Consensus 94 -----------------------------~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~- 143 (609)
T KOG4227|consen 94 -----------------------------PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA- 143 (609)
T ss_pred -----------------------------CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee-
Confidence 001111125677899999999999999999 9999999999976654321
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.-....+.|+.+..+|.. +.|++.+.++.|.+||.+...... ..+-. .........+.|+|
T Consensus 144 -----~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~---~~~~~----------AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 144 -----NENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPI---SLVLP----------ANSGKNFYTAEFHP 204 (609)
T ss_pred -----cccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCC---ceeee----------cCCCccceeeeecC
Confidence 223345689999999997 899999999999999998765221 11111 11124577889999
Q ss_pred CCC-EEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 352 NGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 352 ~g~-~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
... +|++.+. +.+.+||.+.+..++....+........ ..-+++.|+|+|+.+++--....-.+||+.+
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~---------~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S 275 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQEN---------TEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS 275 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccc---------hhhhheeeCCCCCeehhhhccCCCEEeeeec
Confidence 654 5556655 8899999997666655444333221100 0112788999999988776655666788876
Q ss_pred CceeeeeecCC------CcceeEEEECCCCCceeecCCCCeEEEee-------------CCCCC--ccc--cCCc---cc
Q 010256 430 GSAESTTLEAS------KNPMRRQVQTPSRPSRPLGSLSGVVRRVK-------------GADNS--ALD--ANGN---AF 483 (514)
Q Consensus 430 ~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~s~d~~v~i~~-------------~~~~~--~~~--~~~~---~~ 483 (514)
..+........ ...+.+++|.-+.. +++||.+-.+.+++ |.... ..+ +.+. +.
T Consensus 276 ~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr 354 (609)
T KOG4227|consen 276 QRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLR 354 (609)
T ss_pred ccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEe
Confidence 54433332211 12356777766644 99999998888811 11000 000 1111 22
Q ss_pred ccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 484 DFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 484 ~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
+|.+-++.+.|+|-.++|++.+ .+.+.||+
T Consensus 355 GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 355 GHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cccccccceeecCCcceEeccchhhheeccc
Confidence 6888999999999999888555 88888886
No 183
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=2.7e-17 Score=146.19 Aligned_cols=209 Identities=13% Similarity=0.166 Sum_probs=150.6
Q ss_pred cEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCc
Q 010256 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (514)
Q Consensus 127 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (514)
..|+.++.||.+.+.+-.. +.......+ .+.+. +-.|+|||..+ ++.++||.
T Consensus 76 d~~~i~s~DGkf~il~k~~-rVE~sv~AH--------~~A~~-------~gRW~~dGtgL------------lt~GEDG~ 127 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA-RVERSISAH--------AAAIS-------SGRWSPDGAGL------------LTAGEDGV 127 (737)
T ss_pred ceEEEEcCCceEEEecccc-hhhhhhhhh--------hhhhh-------hcccCCCCcee------------eeecCCce
Confidence 4688889999998876432 222222222 22222 56899999999 99999999
Q ss_pred EEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceE
Q 010256 207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT 286 (514)
Q Consensus 207 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 286 (514)
|++|. ...+ .+..+.....+|+|++|.|+.+.++-+..+.+.+=-+......+ ....|.+-|.
T Consensus 128 iKiWS----rsGM-----LRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i--------~WkAHDGiiL 190 (737)
T KOG1524|consen 128 IKIWS----RSGM-----LRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKII--------RWRAHDGLVL 190 (737)
T ss_pred EEEEe----ccch-----HHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeeccccccee--------EEeccCcEEE
Confidence 99998 2221 12222445578999999999999888877777776666444333 4678999999
Q ss_pred EEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEE
Q 010256 287 SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKL 366 (514)
Q Consensus 287 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~i 366 (514)
++.|+|.. +++++|++|-..++||-....+. . -..|..+|++++|.|+ +.++.++..++++
T Consensus 191 ~~~W~~~s-~lI~sgGED~kfKvWD~~G~~Lf-----~------------S~~~ey~ITSva~npd-~~~~v~S~nt~R~ 251 (737)
T KOG1524|consen 191 SLSWSTQS-NIIASGGEDFRFKIWDAQGANLF-----T------------SAAEEYAITSVAFNPE-KDYLLWSYNTARF 251 (737)
T ss_pred EeecCccc-cceeecCCceeEEeecccCcccc-----c------------CChhccceeeeeeccc-cceeeeeeeeeee
Confidence 99999998 89999999999999997543321 1 1235578999999999 7777777766662
Q ss_pred EEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEe
Q 010256 367 WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (514)
Q Consensus 367 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 426 (514)
=..+. ..|+.++||+||..++.|...|.+.+=.
T Consensus 252 ~~p~~---------------------------GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 252 SSPRV---------------------------GSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred cCCCc---------------------------cceEEEEEcCCCceeeccccCceEEEee
Confidence 11111 1245899999999999999888875533
No 184
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.79 E-value=2.2e-17 Score=137.96 Aligned_cols=355 Identities=15% Similarity=0.157 Sum_probs=211.6
Q ss_pred EEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEE
Q 010256 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (514)
Q Consensus 40 ~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~ 119 (514)
-.+|||+|+++|+.+.- ++.|-|..+-+.. ..+.. -+.|..|.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~-----------------------qlf~c-------------ldki~yie 55 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLH-----------------------QLFLC-------------LDKIVYIE 55 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHH-----------------------HHHHH-------------HHHhhhee
Confidence 46899999999998755 7888887654421 10110 15688899
Q ss_pred EeeCCCCcEEEE-eeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcc
Q 010256 120 WCQSANSALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (514)
Q Consensus 120 ~~~~~~~~~l~s-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (514)
| ..+..+++. +..|+.|.+|++...+....+... .+..+.+.|+|||+.+ +
T Consensus 56 W--~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg---------------~agls~~~WSPdgrhi-----------L 107 (447)
T KOG4497|consen 56 W--KADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG---------------QAGLSSISWSPDGRHI-----------L 107 (447)
T ss_pred e--eccceeeeeeeeccceEEEEEeecceeEEEeccC---------------CCcceeeeECCCcceE-----------e
Confidence 9 456556665 478889999999988765544433 1222378999999765 2
Q ss_pred cCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCC
Q 010256 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA 276 (514)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (514)
.+...+-.|.+|. +-+.... ++.-.+..+..++|+|||++.+.+ .|.. ....+.. .+...+ + .
T Consensus 108 ~tseF~lriTVWS-L~t~~~~--------~~~~pK~~~kg~~f~~dg~f~ai~sRrDCk-dyv~i~~-c~~W~l--l--~ 172 (447)
T KOG4497|consen 108 LTSEFDLRITVWS-LNTQKGY--------LLPHPKTNVKGYAFHPDGQFCAILSRRDCK-DYVQISS-CKAWIL--L--K 172 (447)
T ss_pred eeecceeEEEEEE-eccceeE--------EecccccCceeEEECCCCceeeeeecccHH-HHHHHHh-hHHHHH--H--H
Confidence 6677788899998 3332221 112233456889999999998876 3321 0011110 000000 0 0
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEE
Q 010256 277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (514)
Q Consensus 277 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 356 (514)
.+.-..-..+.+.|+||| +.|++ ||---... +..++.. -.+..++|+|.+++|
T Consensus 173 ~f~~dT~DltgieWsPdg-~~laV---------wd~~Leyk----v~aYe~~-------------lG~k~v~wsP~~qfl 225 (447)
T KOG4497|consen 173 EFKLDTIDLTGIEWSPDG-NWLAV---------WDNVLEYK----VYAYERG-------------LGLKFVEWSPCNQFL 225 (447)
T ss_pred hcCCCcccccCceECCCC-cEEEE---------ecchhhhe----eeeeeec-------------cceeEEEeccccceE
Confidence 122234446788999998 66664 43211110 1111111 257889999999999
Q ss_pred EEEeC-CeEEEEEccCCCCcee-----------------------------e-------eeecccccc----cc------
Q 010256 357 LSRDY-MTLKLWDINMDSGPVA-----------------------------T-------FQVHEHLRP----KL------ 389 (514)
Q Consensus 357 ~~~~~-~~i~iwd~~~~~~~~~-----------------------------~-------~~~~~~~~~----~~------ 389 (514)
+.|+. +++||.+--+ -++.. . +..|..... ..
T Consensus 226 avGsyD~~lrvlnh~t-Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~ 304 (447)
T KOG4497|consen 226 AVGSYDQMLRVLNHFT-WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVK 304 (447)
T ss_pred Eeeccchhhhhhceee-eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhccee
Confidence 99865 8888755321 00000 0 000000000 00
Q ss_pred -------ccccccCCccceeeEEEcCCCCEEEEEeCC--CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecC
Q 010256 390 -------CDLYENDSIFDKFECCLSGDGGRVATGSYS--NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS 460 (514)
Q Consensus 390 -------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s 460 (514)
.+.. +..-++-.++|++|..|++|-.+. +.+.+||++.. ....+-....+|++..|.|...-|+.+.
T Consensus 305 ~~~lkp~tD~p--nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l--~l~avLiQk~piraf~WdP~~prL~vct 380 (447)
T KOG4497|consen 305 VHKLKPPTDFP--NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL--KLHAVLIQKHPIRAFEWDPGRPRLVVCT 380 (447)
T ss_pred eecccCCCCCC--CcccccceeeecCCceEEeeecCCCCceEEEEechhh--hhhhhhhhccceeEEEeCCCCceEEEEc
Confidence 0000 001134468999999999986543 67999999854 2334445667999999999999888887
Q ss_pred CCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEE
Q 010256 461 LSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 510 (514)
Q Consensus 461 ~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~ 510 (514)
....+++ |.+.. .+........-.|..+.|+-+|..|+..+.|...
T Consensus 381 g~srLY~---W~psg-~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 381 GKSRLYF---WAPSG-PRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred CCceEEE---EcCCC-ceEEecCCCCceeeeEEecCCCcEEEEEcCCceE
Confidence 6666666 22221 1111111234688999999999999988877543
No 185
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=2.2e-17 Score=155.24 Aligned_cols=287 Identities=14% Similarity=0.195 Sum_probs=186.3
Q ss_pred ccccccchhhccccCcccccccccceEEEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccce
Q 010256 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (514)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (514)
....|.+... .. +.....-...|+|++|+| +..+||.|..+|.|.+||+..+... |...
T Consensus 223 ~~~vW~~~~p-~~--Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~-----------------~~s~ 282 (555)
T KOG1587|consen 223 VLLVWSLKNP-NT--PELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT-----------------PPSG 282 (555)
T ss_pred eEEEEecCCC-CC--ceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC-----------------CCcc
Confidence 5667888775 21 212334568999999999 6788999999999999999866642 0000
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEE-EEEeeccCCCccccCCcceecc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGS 170 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~ 170 (514)
.-.....|. +.|+.+.|..+..+.-+++++.||.|..|+++.-.. ........... .+.-...
T Consensus 283 ls~~~~sh~------------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~----~~~~~~~ 346 (555)
T KOG1587|consen 283 LSALEVSHS------------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH----KGQQSSK 346 (555)
T ss_pred cccccccCC------------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccc----ccccccc
Confidence 112233455 889999998876666799999999999998765322 11100000000 0000011
Q ss_pred cccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccc--cccccccccccCccCeEEEEECCCCCEE
Q 010256 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNL--VAGCRRIYAHAHDYHINSISNNSDGETF 248 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l 248 (514)
......+.|.+..... ++.|++.|.|.--. -....... ..+.... ...|.++|+++.++|-+..+
T Consensus 347 ~~~~t~~~F~~~~p~~-----------FiVGTe~G~v~~~~-r~g~~~~~~~~~~~~~~-~~~h~g~v~~v~~nPF~~k~ 413 (555)
T KOG1587|consen 347 AVGATSLKFEPTDPNH-----------FIVGTEEGKVYKGC-RKGYTPAPEVSYKGHST-FITHIGPVYAVSRNPFYPKN 413 (555)
T ss_pred ccceeeEeeccCCCce-----------EEEEcCCcEEEEEe-ccCCccccccccccccc-ccccCcceEeeecCCCccce
Confidence 1122255565544322 37888888886422 11111111 0111222 26789999999999987665
Q ss_pred EEe-cCCeEEEEecc-CCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccccee
Q 010256 249 ISA-DDLRINLWNLE-ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 249 ~s~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
+.. .|.+++||... ...... .+..+...+++++|||..+..|+++..||.+.+||+...... ++....
T Consensus 414 fls~gDW~vriWs~~~~~~Pl~--------~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~--Pv~s~~ 483 (555)
T KOG1587|consen 414 FLSVGDWTVRIWSEDVIASPLL--------SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE--PVLSQK 483 (555)
T ss_pred eeeeccceeEeccccCCCCcch--------hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC--Cccccc
Confidence 554 89999999977 333322 345566779999999999899999999999999999765421 111111
Q ss_pred ccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEcc
Q 010256 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDIN 370 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~ 370 (514)
-+....+.+.|+++|+.|+.|++ |++.+|++.
T Consensus 484 ------------~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 484 ------------VCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ------------ccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 11246778889999999999988 999999996
No 186
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=3.9e-18 Score=152.49 Aligned_cols=258 Identities=19% Similarity=0.211 Sum_probs=175.1
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|..+.|.|+.. .|++++.||+|++|+++... .
T Consensus 295 d~ir~l~~~~sep--~lit~sed~~lk~WnLqk~~--~------------------------------------------ 328 (577)
T KOG0642|consen 295 DCIRALAFHPSEP--VLITASEDGTLKLWNLQKAK--K------------------------------------------ 328 (577)
T ss_pred hhhhhhhcCCCCC--eEEEeccccchhhhhhcccC--C------------------------------------------
Confidence 8899999976554 89999999999999994310 0
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
........+ .+ +.+|.++|.|+++.+.++.+.+| -||+|+.|++..........
T Consensus 329 --------s~~~~~epi----------------~t-fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~ 383 (577)
T KOG0642|consen 329 --------SAEKDVEPI----------------LT-FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSY 383 (577)
T ss_pred --------ccccceeee----------------EE-EecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCccccc
Confidence 000001122 22 38999999999999999999999 99999999776332222111
Q ss_pred cc--CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 272 DV--KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 272 ~~--~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
+. -...+.+|.+.++.+++++.. ..|++++.||++++|+...... .+|...... +.-.++++
T Consensus 384 dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-----~~f~~~~e~----------g~Plsvd~ 447 (577)
T KOG0642|consen 384 DPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-----CTFGEPKEH----------GYPLSVDR 447 (577)
T ss_pred Ccchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCc-----cccCCcccc----------CCcceEee
Confidence 10 013578999999999999987 7899999999999999876553 222222211 22344554
Q ss_pred ecCCC-EEEE-EeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 350 ARNGR-HILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 350 s~~g~-~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
-.... ..++ ..-+.-.++++.. ...+..+....... .. ... .+..+.++|.+.+.+++..|+.|+++|.
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev-~s~~~~~~s~~~~~--~~---~~~---~in~vVs~~~~~~~~~~hed~~Ir~~dn 518 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEV-VSDLLIFESSASPG--PR---RYP---QINKVVSHPTADITFTAHEDRSIRFFDN 518 (577)
T ss_pred ccchhHhhhhhcccccccchhhhh-hhheeeccccCCCc--cc---ccC---ccceEEecCCCCeeEecccCCceecccc
Confidence 43221 1111 1123334444443 33333332221110 00 001 1236888999999999999999999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.++ .+......|...++++++.|+|.+|++++.||.+++
T Consensus 519 ~~~-~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l 557 (577)
T KOG0642|consen 519 KTG-KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRL 557 (577)
T ss_pred ccc-ccchheeeccceecceeecCCCceEEeecCCceeeh
Confidence 988 455788899999999999999999999999999999
No 187
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=4.1e-18 Score=149.59 Aligned_cols=304 Identities=15% Similarity=0.188 Sum_probs=216.8
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.-+|.+.|+.|.|+..|..|++|+.|..|.+||+..+... +.-..||.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~----------------------l~f~SGH~---------- 185 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK----------------------LSFESGHC---------- 185 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcc----------------------cccccccc----------
Confidence 3489999999999999999999999999999999876632 22245676
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|..-.|.|..+...+++++.||.+++=.+....
T Consensus 186 --~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~------------------------------------------- 220 (559)
T KOG1334|consen 186 --NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG------------------------------------------- 220 (559)
T ss_pred --cchhhhhccCCCCCcCceeccccCceeeeeecccc-------------------------------------------
Confidence 77888889998888899999999999886543211
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC-CEEEEe-cCCeEEEEeccCCCcee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
.-.++.+ +..|.++|..++.-|+. ..|.++ .|+.+.-+|+++....-
T Consensus 221 -----------~~e~t~r--------------------l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~ 269 (559)
T KOG1334|consen 221 -----------YVENTKR--------------------LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE 269 (559)
T ss_pred -----------ceeccee--------------------cccccCccceeeecCCCCCcccccccccceeeeeeccCCccc
Confidence 1111111 35788999999999974 446666 99999999998665443
Q ss_pred eeeccCCCcccccC---CceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccc--ccccceeccCCCCccceeeccccc
Q 010256 269 NIVDVKPANMEDLT---EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD--THSKLFEEQEAPGTRSFFTEIIAS 343 (514)
Q Consensus 269 ~~~~~~~~~~~~~~---~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 343 (514)
.+. .-..+. -....++.+|...+.+++|+.|..+++||.+.-.... ..+..|-.+.. .....-.
T Consensus 270 ~~~-----cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl------~~d~~v~ 338 (559)
T KOG1334|consen 270 KFV-----CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL------VEDDPVN 338 (559)
T ss_pred eee-----eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc------cccCccc
Confidence 221 111122 2567899999887799999999999999988643210 00112211111 1112246
Q ss_pred eeEEEEecCC-CEEEEEeCCeEEEEEccCC-C----------Ccee-eeeeccccccccccccccCCccceeeE-EEcCC
Q 010256 344 ISDIKFARNG-RHILSRDYMTLKLWDINMD-S----------GPVA-TFQVHEHLRPKLCDLYENDSIFDKFEC-CLSGD 409 (514)
Q Consensus 344 i~~~~~s~~g-~~l~~~~~~~i~iwd~~~~-~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~ 409 (514)
|++++|+.++ .+|++-.|-.|+++.-... + ..++ .+++|..... |-.+ -|-|.
T Consensus 339 ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T-------------VKgVNFfGPr 405 (559)
T KOG1334|consen 339 ITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT-------------VKGVNFFGPR 405 (559)
T ss_pred ceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccc-------------cceeeeccCc
Confidence 9999999654 5666667778899864431 1 1112 2455543321 2233 36789
Q ss_pred CCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 410 GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 410 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+|+++|++=|.|.||+-+++ .++..+++...-|+++..+|--++||+++-|.-|+|
T Consensus 406 sEyVvSGSDCGhIFiW~K~t~-eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKI 462 (559)
T KOG1334|consen 406 SEYVVSGSDCGHIFIWDKKTG-EIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKI 462 (559)
T ss_pred cceEEecCccceEEEEecchh-HHHHHhhcccceEeccCCCCCCchhhccCCccceee
Confidence 999999999999999999887 455778887779999999999999999999999999
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=2.6e-15 Score=138.46 Aligned_cols=206 Identities=16% Similarity=0.153 Sum_probs=127.8
Q ss_pred eEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 236 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
...++++|++++|+++ .++.|.+|++++.+....... .+. +......++++|++..++++...++.|.+||+.
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~----~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQ----IIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCcee----ecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence 4579999999988887 589999999974432211110 111 223467788999994344555567999999997
Q ss_pred CCcccccc-ccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--CCeEEEEEccCC-CC--ceeeeeecccccc
Q 010256 314 QSALCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMD-SG--PVATFQVHEHLRP 387 (514)
Q Consensus 314 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~iwd~~~~-~~--~~~~~~~~~~~~~ 387 (514)
+...+... ........ ......++|+|+|+++++.+ +++|.+|+++.. ++ .+..+........
T Consensus 157 ~~g~l~~~~~~~~~~~~-----------g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~ 225 (330)
T PRK11028 157 DDGHLVAQEPAEVTTVE-----------GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFS 225 (330)
T ss_pred CCCcccccCCCceecCC-----------CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence 63322100 00011000 12456799999999998864 499999999742 22 1222221110000
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEe-CCCcEEEEecCCCceeeeeecCCC---cceeEEEECCCCCceeecCC-C
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASK---NPMRRQVQTPSRPSRPLGSL-S 462 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~s~-d 462 (514)
... . ...+.++|+|++|+++. .++.|.+|++...... .++.++. ...+.+.++|++++|+++.. +
T Consensus 226 -------~~~-~-~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~ 295 (330)
T PRK11028 226 -------DTR-W-AADIHITPDGRHLYACDRTASLISVFSVSEDGSV-LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS 295 (330)
T ss_pred -------CCc-c-ceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-EEEeEEEeccccCCceEECCCCCEEEEEEccC
Confidence 000 0 11588999999998875 4789999999654321 1222221 24568899999999987764 8
Q ss_pred CeEEE
Q 010256 463 GVVRR 467 (514)
Q Consensus 463 ~~v~i 467 (514)
++|.+
T Consensus 296 ~~v~v 300 (330)
T PRK11028 296 HHISV 300 (330)
T ss_pred CcEEE
Confidence 88888
No 189
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=1.8e-17 Score=134.13 Aligned_cols=291 Identities=11% Similarity=0.086 Sum_probs=179.4
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|+++.| ..++ +|+++..-|.|++|++++........... .-.+. .+...|++..
T Consensus 15 ~~v~s~~f--qa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g-------~~~it-------~lq~~p~d~l------- 70 (323)
T KOG0322|consen 15 SSVTSVLF--QANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFG-------RLFIT-------NLQSIPNDSL------- 70 (323)
T ss_pred chheehhh--ccch-hhhcccccceEEEEEeecCccchhhhhhc-------cceee-------ceeecCCcch-------
Confidence 88999999 5554 69999999999999999887655544221 11111 3444555433
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-----C---CEEEEe-cCC--eEEEEec
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-----G---ETFISA-DDL--RINLWNL 261 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~---~~l~s~-~d~--~i~iwd~ 261 (514)
.+-+.|+.+.+|+ +... .+...|+-.++++.|.+. + ..++.. ..+ .+.+-|.
T Consensus 71 ------~tqgRd~~L~lw~-ia~s----------~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~ 133 (323)
T KOG0322|consen 71 ------DTQGRDPLLILWT-IAYS----------AFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG 133 (323)
T ss_pred ------hhcCCCceEEEEE-ccCc----------ceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhcc
Confidence 7888999999998 3221 112344444555555432 1 112221 111 1222222
Q ss_pred cCCCceeeeeccCCCcccccCCceEEEEEecC-CC-cEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeec
Q 010256 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPT-HC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (514)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~-~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (514)
. ... .+. +.+..-....+.+++..+.-+ +. -+++.|.++|.+.+||+.++....+....++. ......
T Consensus 134 g--~~t-qv~-i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv------~~~~as 203 (323)
T KOG0322|consen 134 G--DTT-QVQ-IADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKV------ESPNAS 203 (323)
T ss_pred C--ccc-eeE-ccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccc------ccchhh
Confidence 1 111 110 111112233456677664332 21 35667888999999999987543221222221 112456
Q ss_pred cccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC
Q 010256 340 IIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (514)
Q Consensus 340 ~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (514)
|..++.++.+.+.-..=++|+ +..+..|+++.....+..-..+.-..+ +|..+.+-||++.+||++.
T Consensus 204 h~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknp------------Gv~gvrIRpD~KIlATAGW 271 (323)
T KOG0322|consen 204 HKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNP------------GVSGVRIRPDGKILATAGW 271 (323)
T ss_pred ccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCC------------CccceEEccCCcEEeeccc
Confidence 778999999987544444443 367888888752122111111111000 1227889999999999999
Q ss_pred CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 419 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|++||||..++... ...++.|+..|++++|+|+..++|.+|.|+.|.+
T Consensus 272 D~RiRVyswrtl~p-LAVLkyHsagvn~vAfspd~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 272 DHRIRVYSWRTLNP-LAVLKYHSAGVNAVAFSPDCELMAAASKDARISL 319 (323)
T ss_pred CCcEEEEEeccCCc-hhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence 99999999998854 4899999999999999999999999999999988
No 190
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.77 E-value=4.2e-16 Score=146.66 Aligned_cols=260 Identities=13% Similarity=0.174 Sum_probs=179.2
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.++.|+|.. ..+++.|+.+|.|.+||++.+.......
T Consensus 243 s~v~~~~f~p~~-p~ll~gG~y~GqV~lWD~~~~~~~~~s~--------------------------------------- 282 (555)
T KOG1587|consen 243 SEVTCLKFCPFD-PNLLAGGCYNGQVVLWDLRKGSDTPPSG--------------------------------------- 282 (555)
T ss_pred CceeEEEeccCC-cceEEeeccCceEEEEEccCCCCCCCcc---------------------------------------
Confidence 679999999854 4688899999999999998765211000
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCCCceee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
.......|..++..+.|..+ +.-++++ .||.|..|+++.-.....
T Consensus 283 --------------------------------ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e 330 (555)
T KOG1587|consen 283 --------------------------------LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVE 330 (555)
T ss_pred --------------------------------cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchh
Confidence 00012578888999988654 3447777 999999998875443322
Q ss_pred eeccCCCc----ccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccccee
Q 010256 270 IVDVKPAN----MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (514)
Q Consensus 270 ~~~~~~~~----~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (514)
.....+.. -......+++++|.+..++.|+.|+.+|.|.--+........ ...++.+ ..+..|.++|.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~--~~~~~~~------~~~~~h~g~v~ 402 (555)
T KOG1587|consen 331 GLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP--EVSYKGH------STFITHIGPVY 402 (555)
T ss_pred hcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc--ccccccc------ccccccCcceE
Confidence 21111111 112345689999999988999999999998763332222110 1222222 23566789999
Q ss_pred EEEEecCCC-EEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC-EEEEEeCCCcEE
Q 010256 346 DIKFARNGR-HILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFR 423 (514)
Q Consensus 346 ~~~~s~~g~-~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~ 423 (514)
++.++|=+. ++.++.|-+++||.......++..+..+... +++++|||... .++++..||.+.
T Consensus 403 ~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~---------------v~~vaWSptrpavF~~~d~~G~l~ 467 (555)
T KOG1587|consen 403 AVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDY---------------VTDVAWSPTRPAVFATVDGDGNLD 467 (555)
T ss_pred eeecCCCccceeeeeccceeEeccccCCCCcchhhhhccce---------------eeeeEEcCcCceEEEEEcCCCcee
Confidence 999999554 4445668899999988336666666555433 45899999775 566778899999
Q ss_pred EEecCCCceee-eeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 424 VFGCSEGSAES-TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 424 iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|||+....... .+...+....+.+.++++++.|+.|...|.+.+
T Consensus 468 iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~ 512 (555)
T KOG1587|consen 468 IWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHI 512 (555)
T ss_pred hhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEE
Confidence 99997543322 444445666777888999999999999999998
No 191
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=8.5e-17 Score=137.65 Aligned_cols=211 Identities=13% Similarity=0.169 Sum_probs=157.2
Q ss_pred ccccccceEEEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 31 EVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
..+|+.+|..++|+| +...+|+|+.|.+|.||++..+... .+-..+...+.||.
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~----------------~~ltepvv~L~gH~--------- 131 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT----------------RDLTEPVVELYGHQ--------- 131 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccc----------------cCcccceEEEeecc---------
Confidence 458999999999999 6679999999999999998766543 11223567889998
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.-++|+|... +.|++++.|++|.+||+.+++....
T Consensus 132 ---rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~-------------------------------------- 169 (472)
T KOG0303|consen 132 ---RRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALIT-------------------------------------- 169 (472)
T ss_pred ---eeEEEEeecccch-hhHhhccCCceEEEEeccCCceeee--------------------------------------
Confidence 8999999998665 5899999999999999998863211
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
..|.+.|.+++|+.+|.+|++. .|..|++||.++++...
T Consensus 170 ----------------------------------------l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~ 209 (472)
T KOG0303|consen 170 ----------------------------------------LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS 209 (472)
T ss_pred ----------------------------------------cCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee
Confidence 2277889999999999999998 99999999999776543
Q ss_pred eeeccCCCccccc-CCceEEEEEecCCCcEEEEEec---CCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 269 NIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSS---KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 269 ~~~~~~~~~~~~~-~~~i~~v~~~p~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
+ -.+| ......+.|-.++ .++.+|-. ++.+-+||..+-..... ...++.. +.|
T Consensus 210 e--------~~~heG~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~~-~~elDtS-------------nGv 266 (472)
T KOG0303|consen 210 E--------GVAHEGAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEEPIA-LQELDTS-------------NGV 266 (472)
T ss_pred e--------cccccCCCcceeEEeccC-ceeeeccccccccceeccCcccccCcce-eEEeccC-------------Cce
Confidence 2 1233 3345677788888 65444432 67899999876543210 1122211 356
Q ss_pred eEEEEecCCCEEEEE--eCCeEEEEEccC
Q 010256 345 SDIKFARNGRHILSR--DYMTLKLWDINM 371 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~--~~~~i~iwd~~~ 371 (514)
.---|.+|...++.+ +|+.|+.|.+..
T Consensus 267 l~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 267 LLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred EEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 656677888877764 469999999986
No 192
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=1.4e-15 Score=140.31 Aligned_cols=274 Identities=9% Similarity=0.069 Sum_probs=163.9
Q ss_pred cCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCC
Q 010256 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA 276 (514)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (514)
++...++.|.+|+ +... . .....+.+ .+.+....++++|++++|+++ .++.|.+|+++..... ....
T Consensus 6 ~~~~~~~~I~~~~-~~~~-g--~l~~~~~~--~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~---- 74 (330)
T PRK11028 6 IASPESQQIHVWN-LNHE-G--ALTLLQVV--DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAA---- 74 (330)
T ss_pred EEcCCCCCEEEEE-ECCC-C--ceeeeeEE--ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEee----
Confidence 5556789999999 4321 1 11112221 223556788999999988765 6899999999732222 1111
Q ss_pred cccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCE
Q 010256 277 NMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 355 (514)
Q Consensus 277 ~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 355 (514)
.. ........++|+|++ +++++++ .++.|.+|++.+..........+.. ......++++|+|++
T Consensus 75 ~~-~~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-------------~~~~~~~~~~p~g~~ 139 (330)
T PRK11028 75 ES-PLPGSPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-------------LEGCHSANIDPDNRT 139 (330)
T ss_pred ee-cCCCCceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-------------CCcccEeEeCCCCCE
Confidence 11 122346789999999 6666655 4899999999643222111111111 124567889999999
Q ss_pred EEEEe--CCeEEEEEccCCCCcee----eeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC-CCcEEEEecC
Q 010256 356 ILSRD--YMTLKLWDINMDSGPVA----TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCS 428 (514)
Q Consensus 356 l~~~~--~~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~ 428 (514)
+++.+ ++.|.+||+...+.... ......+ .. ...++|+|||++++++.. ++.|.+|++.
T Consensus 140 l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----------~~---p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 140 LWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----------AG---PRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred EEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----------CC---CceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 97653 38999999986232211 0111111 00 116899999999988775 8999999997
Q ss_pred C--Cce-eeeeecCC------CcceeEEEECCCCCceeecC-CCCeEEEeeCCCCC-ccccCCcccccccceEEEEEcCC
Q 010256 429 E--GSA-ESTTLEAS------KNPMRRQVQTPSRPSRPLGS-LSGVVRRVKGADNS-ALDANGNAFDFSMKLLHLAWHPS 497 (514)
Q Consensus 429 ~--~~~-~~~~~~~~------~~~v~~~~~~~~~~~l~s~s-~d~~v~i~~~~~~~-~~~~~~~~~~~~~~v~~~~~spd 497 (514)
. +.. ....+... ......+.++|++++++++. .++.|.+++-.... ...+.. ..........++++||
T Consensus 206 ~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~-~~~~~~~p~~~~~~~d 284 (330)
T PRK11028 206 DPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEG-HQPTETQPRGFNIDHS 284 (330)
T ss_pred CCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE-EEeccccCCceEECCC
Confidence 3 221 12222211 11223588999999988875 46788873211000 000111 0011234568999999
Q ss_pred CCEEEEEe--cCcEEEEe
Q 010256 498 ENSIACAA--SNSLYMYY 513 (514)
Q Consensus 498 ~~~l~~~~--~~~~~i~~ 513 (514)
|++|+++. ++.+.+|.
T Consensus 285 g~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 285 GKYLIAAGQKSHHISVYE 302 (330)
T ss_pred CCEEEEEEccCCcEEEEE
Confidence 99999776 66788874
No 193
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.76 E-value=1.6e-16 Score=145.00 Aligned_cols=230 Identities=12% Similarity=0.124 Sum_probs=167.9
Q ss_pred cccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010256 229 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 307 (514)
+++|++.|++++|+.||+.+++| .|..|.+|...-.+.. -..|.+.|.|+.|+|-. ..|++++-. ..
T Consensus 49 LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L----------kYSH~D~IQCMsFNP~~-h~LasCsLs-dF 116 (1081)
T KOG1538|consen 49 LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL----------KYSHNDAIQCMSFNPIT-HQLASCSLS-DF 116 (1081)
T ss_pred cccccceEEEEEEccCCceeccCCCceeEEEeccccccee----------eeccCCeeeEeecCchH-HHhhhcchh-hc
Confidence 48999999999999999999999 9999999997644432 13489999999999987 788888764 45
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccc
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
-+|......... .+ ....+.+++|..||++++.|- +|+|.|-+.. +++...+....+..
T Consensus 117 glWS~~qK~V~K-----~k-------------ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~--gEek~~I~Rpgg~N 176 (1081)
T KOG1538|consen 117 GLWSPEQKSVSK-----HK-------------SSSRIICCSWTNDGQYLALGMFNGTISIRNKN--GEEKVKIERPGGSN 176 (1081)
T ss_pred cccChhhhhHHh-----hh-------------hheeEEEeeecCCCcEEEEeccCceEEeecCC--CCcceEEeCCCCCC
Confidence 678766543211 00 124689999999999999985 5999998654 55555554433321
Q ss_pred cccccccccCCccceeeEEEcCCC-----CEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCC
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDG-----GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
. .|++++|+|.. ..++......++.+|.+... .+ ..-+.-.-...++.+-++|.|++.|+.
T Consensus 177 ---------s---piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~I-gk~r~L~FdP~CisYf~NGEy~LiGGs 242 (1081)
T KOG1538|consen 177 ---------S---PIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QI-GKDRALNFDPCCISYFTNGEYILLGGS 242 (1081)
T ss_pred ---------C---CceEEEecCCCCCCccceEEEEeccceeEEEEecce-ee-cccccCCCCchhheeccCCcEEEEccC
Confidence 1 25699999964 36888888899999988632 22 111111222347788899999999999
Q ss_pred CCeEEE--eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEE
Q 010256 462 SGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 510 (514)
Q Consensus 462 d~~v~i--~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~ 510 (514)
|+.+.+ .+|-++- +.-+....|..++.+|++..++.|..|+.+
T Consensus 243 dk~L~~fTR~GvrLG------Tvg~~D~WIWtV~~~PNsQ~v~~GCqDGTi 287 (1081)
T KOG1538|consen 243 DKQLSLFTRDGVRLG------TVGEQDSWIWTVQAKPNSQYVVVGCQDGTI 287 (1081)
T ss_pred CCceEEEeecCeEEe------eccccceeEEEEEEccCCceEEEEEccCee
Confidence 999999 3333222 222367899999999999999999977654
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=3.1e-15 Score=127.34 Aligned_cols=159 Identities=12% Similarity=0.166 Sum_probs=118.0
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe--cCCeEEEEE
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLID 311 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~--~dg~i~~wd 311 (514)
..|.++.++ .+.|+++-...|+|||+++.+....+- +...+...+.++.+++.+ .+++.-+ ..|.|.+||
T Consensus 88 t~IL~VrmN--r~RLvV~Lee~IyIydI~~MklLhTI~-----t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d 159 (391)
T KOG2110|consen 88 TSILAVRMN--RKRLVVCLEESIYIYDIKDMKLLHTIE-----TTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFD 159 (391)
T ss_pred CceEEEEEc--cceEEEEEcccEEEEecccceeehhhh-----ccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEE
Confidence 456777775 456777722339999999777654431 222345556777777766 5776533 368999999
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-Ce-EEEEEccCCCCceeeeeecccccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MT-LKLWDINMDSGPVATFQVHEHLRPKL 389 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~-i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (514)
..+-+.. ..+..|.+++.+++|+++|.+||++++ |+ ||||.+.. ++.+..+........
T Consensus 160 ~~nl~~v----------------~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~-- 220 (391)
T KOG2110|consen 160 TINLQPV----------------NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVS-- 220 (391)
T ss_pred cccceee----------------eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeE--
Confidence 9875542 235667799999999999999999988 54 79999987 888888876544322
Q ss_pred ccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
|.+++|+|++++|++.+..++|+||.++..
T Consensus 221 -----------IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 221 -----------IYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred -----------EEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 459999999999999999999999998753
No 195
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.8e-15 Score=141.52 Aligned_cols=304 Identities=17% Similarity=0.260 Sum_probs=204.1
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
...|+-.++|.++||+++++|+|..||+|.+|.--..+. +-...+.++-|.
T Consensus 201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-------------------~~~t~t~lHWH~---------- 251 (792)
T KOG1963|consen 201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-------------------DSETCTLLHWHH---------- 251 (792)
T ss_pred hhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-------------------ccccceEEEecc----------
Confidence 567888899999999999999999999999998533110 111335577776
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|+++.| +.+|.+|++|+..+.+.+|.+.+++...
T Consensus 252 --~~V~~L~f--S~~G~~LlSGG~E~VLv~Wq~~T~~kqf---------------------------------------- 287 (792)
T KOG1963|consen 252 --DEVNSLSF--SSDGAYLLSGGREGVLVLWQLETGKKQF---------------------------------------- 287 (792)
T ss_pred --cccceeEE--ecCCceEeecccceEEEEEeecCCCccc----------------------------------------
Confidence 78999999 6788999999999999999998876211
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+..-.++|..+.++||+.+.+.. .|..|.+....+......
T Consensus 288 --------------------------------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t 329 (792)
T KOG1963|consen 288 --------------------------------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST 329 (792)
T ss_pred --------------------------------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence 22333678899999999999888 999999988754443333
Q ss_pred eeccCCC---cccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 270 IVDVKPA---NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 270 ~~~~~~~---~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
+-.+++. .-....+-.+.++++|.- +.++..+..|.|.+||+.+...+.+ ............ ..+.-.+++
T Consensus 330 Isgi~~~~~~~k~~~~~l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~-~~v~~~n~~~~~----~n~~v~ita 403 (792)
T KOG1963|consen 330 ISGIKPPTPSTKTRPQSLTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYK-LQVCDENYSDGD----VNIQVGITA 403 (792)
T ss_pred ccCccCCCccccccccccceeEEEcCCC-CceeecCCCceEEEEeccccceeee-EEEEeecccCCc----ceeEEeeee
Confidence 3222221 112235566788999955 6788889999999999988665321 222221111111 023346888
Q ss_pred EEEecCCCEEEEEe---------C--CeEEEEEccCCCCceeee-----eeccccccccccccccCCccceeeEEEcCCC
Q 010256 347 IKFARNGRHILSRD---------Y--MTLKLWDINMDSGPVATF-----QVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (514)
Q Consensus 347 ~~~s~~g~~l~~~~---------~--~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (514)
++.+..|.++++.. + -.+++|-... ...-..+ ..|.... +..+..++..
T Consensus 404 v~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~-~~kt~~L~T~I~~PH~~~~--------------vat~~~~~~r 468 (792)
T KOG1963|consen 404 VARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP-NSKTFILNTKINNPHGNAF--------------VATIFLNPTR 468 (792)
T ss_pred ehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC-CcceeEEEEEEecCCCcee--------------EEEEEecCcc
Confidence 88888899999852 2 3567887764 2211111 1122111 1123334433
Q ss_pred C-EEEEEeCCCcEEEEecCCCcee---------eeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 411 G-RVATGSYSNLFRVFGCSEGSAE---------STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 411 ~-~l~s~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
. ..++++.||.++||-+...+.. ...-..|..++.+.+|+.||..|+ .+.|++|.+
T Consensus 469 s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Iti 534 (792)
T KOG1963|consen 469 SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITI 534 (792)
T ss_pred cceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEE
Confidence 3 7889999999999998432111 122225789999999999996555 557888888
No 196
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.3e-16 Score=142.24 Aligned_cols=241 Identities=19% Similarity=0.245 Sum_probs=159.8
Q ss_pred cccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
+..+|++-|+|++|+.+|.+|++|+.|-.+.|||.-..+. ....-.||.
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl----------------------lhsI~TgHt--------- 93 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL----------------------LHSISTGHT--------- 93 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcce----------------------eeeeecccc---------
Confidence 4579999999999999999999999999999999764332 223356787
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.++.|.|..+.+++++|+.|..|+++|+...+....
T Consensus 94 ---aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~-------------------------------------- 132 (758)
T KOG1310|consen 94 ---ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGM-------------------------------------- 132 (758)
T ss_pred ---cceeEEeeeccCCCeEEEeccCcceEEEEeccccccccc--------------------------------------
Confidence 889999999988889999999999999999975431000
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC-CEEEEe-cCCeEEEEeccCCCce
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
.+|. ....+. ...|...|..++..|++ +.+.++ .||+|+-+|++....+
T Consensus 133 -------------d~~~---------------~~~~~~-~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c 183 (758)
T KOG1310|consen 133 -------------DHGM---------------EETTRC-WSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC 183 (758)
T ss_pred -------------ccCc---------------cchhhh-hhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC
Confidence 0000 001111 25788889999999998 677788 9999999999864332
Q ss_pred eeeecc--CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccc--ceeccCCCC-ccceeeccc-
Q 010256 268 FNIVDV--KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK--LFEEQEAPG-TRSFFTEII- 341 (514)
Q Consensus 268 ~~~~~~--~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~- 341 (514)
..-.+. ....+...--...++..+|..+.+|++|+.|-..++||.+.......... ..-.+.+-. -+.+..+|.
T Consensus 184 ~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlk 263 (758)
T KOG1310|consen 184 NPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLK 263 (758)
T ss_pred CccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcccc
Confidence 110000 00011112234678999999989999999999999999643211100000 000000000 001111111
Q ss_pred ----------cceeEEEEecCCCEEEEE-eCCeEEEEEccC
Q 010256 342 ----------ASISDIKFARNGRHILSR-DYMTLKLWDINM 371 (514)
Q Consensus 342 ----------~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~ 371 (514)
..++-+.|+|+|.-|+.. +.-.|+++|+..
T Consensus 264 n~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 264 NSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred CcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 236778999999877764 335899999876
No 197
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=7.4e-16 Score=150.06 Aligned_cols=289 Identities=17% Similarity=0.213 Sum_probs=179.0
Q ss_pred cCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCC
Q 010256 85 SRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGN 164 (514)
Q Consensus 85 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
.|+|.+..++.+..|. ..|..++.+ ++.+.+|++|+.||+||+|+.+.-.... ...
T Consensus 1033 gW~p~G~lVAhL~Ehs------------~~v~k~a~s-~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~---------- 1088 (1431)
T KOG1240|consen 1033 GWNPRGILVAHLHEHS------------SAVIKLAVS-SEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSA---------- 1088 (1431)
T ss_pred CCCccceEeehhhhcc------------ccccceeec-CCCCceEEEecCCceEEEeeehhhhcCc-cee----------
Confidence 3577888888888887 778888886 3555799999999999999987532110 000
Q ss_pred cceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEE-EEECC
Q 010256 165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINS-ISNNS 243 (514)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~ 243 (514)
-+.+.+++.+........+...+.++.++.||.|++.++-..........+.+..-....+.+.+ -+|..
T Consensus 1089 ---------rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~ 1159 (1431)
T KOG1240|consen 1089 ---------RSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTA 1159 (1431)
T ss_pred ---------eeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccc
Confidence 00234444444444444555555558999999999988322111222222222221122233333 33433
Q ss_pred C-CC-EEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccc
Q 010256 244 D-GE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320 (514)
Q Consensus 244 ~-~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 320 (514)
. +. .++.+ .-+.|..||+++......+ ......+.|++++.+|.+ +++++|+..|.+.+||+|-+..
T Consensus 1160 ~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l------k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~--- 1229 (1431)
T KOG1240|consen 1160 IVQSHVLVYATDLSRIVSWDTRMRHDAWRL------KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVP--- 1229 (1431)
T ss_pred cccceeEEEEEeccceEEecchhhhhHHhh------hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCce---
Confidence 2 33 66677 8899999999865544332 233346789999999998 8999999999999999997665
Q ss_pred cccceeccCCCCccceeeccccceeEEEEecC---CCEEEE-Ee-C-CeEEEEEccCCCCceeeeeeccccccccccccc
Q 010256 321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILS-RD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 394 (514)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---g~~l~~-~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (514)
+..|+-+ +..+|+.+..+|- ....++ +. . +.|.+|++.+ +....++....+. ..+.....
T Consensus 1230 -i~sw~~P-----------~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~~-p~ls~~~P 1295 (1431)
T KOG1240|consen 1230 -ILSWEHP-----------ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDGA-PILSYALP 1295 (1431)
T ss_pred -eecccCc-----------ccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCCC-cchhhhcc
Confidence 3333322 2257788877763 345555 43 3 8999999997 6555555433111 11111111
Q ss_pred cC-----CccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 395 ND-----SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 395 ~~-----~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
.+ .......+++..-+.++.+|+.|..|+.||....
T Consensus 1296 s~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1296 SNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 10 0111123455556678899999999999998764
No 198
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.2e-16 Score=138.38 Aligned_cols=196 Identities=15% Similarity=0.160 Sum_probs=145.5
Q ss_pred EEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCC
Q 010256 237 NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (514)
Q Consensus 237 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 315 (514)
..++|+.+|..++++ .||++|+|+........ ....|...|.++.|+||| .+|++-+.| ..+||+.+++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--------~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--------EEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh--------hhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccC
Confidence 689999999999999 99999999966444332 345688999999999999 899999999 9999999998
Q ss_pred ccccccccceeccCCCCccceeeccccceeEEEEecCC---CEE-EE-EeC-CeEEEEEccCCCCceeeeeecccccccc
Q 010256 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG---RHI-LS-RDY-MTLKLWDINMDSGPVATFQVHEHLRPKL 389 (514)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g---~~l-~~-~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (514)
..... ...++. ......+.|+.|+ .+. ++ ... +.|+.||+....+. ..++.....
T Consensus 218 ~~~a~-~t~~~k-------------~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~---- 278 (398)
T KOG0771|consen 218 AALAR-KTPFSK-------------DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKI---- 278 (398)
T ss_pred chhhh-cCCccc-------------chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhh----
Confidence 54321 111111 1346778888766 222 33 234 77888777642221 111111110
Q ss_pred ccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.....|.+++.++||+++|.|+.||.|-|++..+.+.....-+.|...|+.+.|+|+.+++++.|.|....+
T Consensus 279 ------~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 279 ------KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred ------hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 001124499999999999999999999999999887666777899999999999999999999999988887
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=5.7e-16 Score=147.17 Aligned_cols=168 Identities=14% Similarity=0.119 Sum_probs=110.8
Q ss_pred EEEECCCCCEEEEe--cCCeEEEE--eccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEE-EEecCCeEEEEEc
Q 010256 238 SISNNSDGETFISA--DDLRINLW--NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDM 312 (514)
Q Consensus 238 ~~~~~~~~~~l~s~--~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~-~~~~dg~i~~wd~ 312 (514)
.++|+|||+.|+.+ .+|.+.|| |+.++. .. .+..+...+....|+|+| +.|+ ++..++...||++
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~--------~lt~~~~~~~~~~wSpDG-~~i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PS--------QLTSGAGNNTEPSWSPDG-QSILFTSDRSGSPQVYRM 321 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eE--------eeccCCCCcCCEEECCCC-CEEEEEECCCCCceEEEE
Confidence 47899999988875 57766665 554332 22 234455667889999999 5555 4446788889887
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 392 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 392 (514)
...... ...+ .+.. ....|+|||++|+..+...+.+||+.+ ++... +.....
T Consensus 322 ~~~~~~---~~~l-------------~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~-g~~~~-lt~~~~-------- 373 (429)
T PRK01742 322 SASGGG---ASLV-------------GGRG--YSAQISADGKTLVMINGDNVVKQDLTS-GSTEV-LSSTFL-------- 373 (429)
T ss_pred ECCCCC---eEEe-------------cCCC--CCccCCCCCCEEEEEcCCCEEEEECCC-CCeEE-ecCCCC--------
Confidence 543211 1111 1112 357899999999886555567799876 44322 211110
Q ss_pred cccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC--CCceeeeeecCCCcceeEEEECCC
Q 010256 393 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS--EGSAESTTLEASKNPMRRQVQTPS 452 (514)
Q Consensus 393 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~ 452 (514)
...+.|+|||++|+.++.++.+.+|.+. ++ .....+..|...+...+|+|-
T Consensus 374 --------~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 374 --------DESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred --------CCCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEccCCCCCCCCcccCCC
Confidence 0167899999999999999988888753 33 344677788888888888875
No 200
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=4.6e-16 Score=127.88 Aligned_cols=254 Identities=12% Similarity=0.190 Sum_probs=173.1
Q ss_pred cccccceEEEEEcCCC-----CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccc
Q 010256 32 VQEVDIISAIEFDKSG-----DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g-----~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (514)
+.|.-+++.+.|.|+. ++|||. +..+|+|.+......-. ....+..+
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~-------------------~~~~L~~~------- 144 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVE-------------------LQSVLNNN------- 144 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCcee-------------------hhhhhccC-------
Confidence 5789999999999976 467764 33799999875332100 00111111
Q ss_pred cccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEE---EEEeeccCCCccccCCcceecccccCCceeeccCC
Q 010256 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV---KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (514)
Q Consensus 107 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 183 (514)
++-++..++++..|+- -+-+++.+++-|-+..|||++.+.. +..+-.+ ...|+ .++|...+
T Consensus 145 kns~~~aPlTSFDWne-~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH--------DKEV~-------DIaf~~~s 208 (364)
T KOG0290|consen 145 KNSEFCAPLTSFDWNE-VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH--------DKEVY-------DIAFLKGS 208 (364)
T ss_pred cccccCCccccccccc-CCcceeEeecccCeEEEEEEeeccccceeeEEEec--------Cccee-------EEEeccCc
Confidence 1222337899999973 4557899999999999999998732 2222222 23344 67777755
Q ss_pred CccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccC-ccCeEEEEECCC-CCEEEEe--cCCeEEEE
Q 010256 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH-DYHINSISNNSD-GETFISA--DDLRINLW 259 (514)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~-~~~l~s~--~d~~i~iw 259 (514)
.. ++++.+.||++|++| +...+-... .+.... ..+...++|++. -+++|+- +...|.+.
T Consensus 209 ~~-----------~FASvgaDGSvRmFD-LR~leHSTI-----IYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL 271 (364)
T KOG0290|consen 209 RD-----------VFASVGADGSVRMFD-LRSLEHSTI-----IYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL 271 (364)
T ss_pred cc-----------eEEEecCCCcEEEEE-ecccccceE-----EecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence 53 358999999999999 665543211 111222 456778999875 5666664 68899999
Q ss_pred eccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcc--ccccccceeccCCCCcccee
Q 010256 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL--CDTHSKLFEEQEAPGTRSFF 337 (514)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~ 337 (514)
|++.....+. .+++|.+.|..++|.|..+..|.+++.|....+||+.+... ...++..+.
T Consensus 272 DiR~P~tpva-------~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~----------- 333 (364)
T KOG0290|consen 272 DIRVPCTPVA-------RLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT----------- 333 (364)
T ss_pred EecCCCccee-------hhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-----------
Confidence 9997665442 68999999999999999889999999999999999976432 111122222
Q ss_pred eccccceeEEEEec-CCCEEEEEeCCeEEE
Q 010256 338 TEIIASISDIKFAR-NGRHILSRDYMTLKL 366 (514)
Q Consensus 338 ~~~~~~i~~~~~s~-~g~~l~~~~~~~i~i 366 (514)
-.+.|..+.|++ .+..++.+..+++.+
T Consensus 334 --a~~EVNqi~Ws~~~~Dwiai~~~kklei 361 (364)
T KOG0290|consen 334 --AGGEVNQIQWSSSQPDWIAICFGKKLEI 361 (364)
T ss_pred --ccceeeeeeecccCCCEEEEEecCeeeE
Confidence 225799999996 567888776655554
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=9e-16 Score=147.26 Aligned_cols=295 Identities=14% Similarity=0.166 Sum_probs=184.6
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
-..+.|+|-.+ .++++...-.|++||.+.++...-+.....+ . ...+.+.+. +..+
T Consensus 1067 pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~-----~-------t~Vs~l~li----------Ne~D 1122 (1387)
T KOG1517|consen 1067 PKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFP-----D-------TRVSDLELI----------NEQD 1122 (1387)
T ss_pred CceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCC-----C-------Cccceeeee----------cccc
Confidence 44566766554 7888887889999999988764433322111 0 111122222 2223
Q ss_pred CCcccCCCCCCcEEeceeeccccccccc----cccccccccCccCeEEEEECCC-CCEEEEecCCeEEEEeccCCCceee
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVA----GCRRIYAHAHDYHINSISNNSD-GETFISADDLRINLWNLEISNQSFN 269 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~d~~i~iwd~~~~~~~~~ 269 (514)
..++++++.||.||||+-.......... ........+..+.=.-+.|... |.++++|+-..|+|||......+..
T Consensus 1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred hhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEee
Confidence 3455999999999999822221111110 1111111111222234567665 5555556889999999985554433
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccc--eeEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS--ISDI 347 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~ 347 (514)
+ -.+....|+++.-+..+++.++.|..||.|++||.|.... +..+..+.. |+.. |..+
T Consensus 1203 i-------P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-ds~v~~~R~------------h~~~~~Iv~~ 1262 (1387)
T KOG1517|consen 1203 I-------PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP-DSLVCVYRE------------HNDVEPIVHL 1262 (1387)
T ss_pred c-------ccCCCccceeecccccCCceEEEeecCCceEEeecccCCc-cccceeecc------------cCCcccceeE
Confidence 2 1224566777766555458999999999999999987543 122344443 4344 9999
Q ss_pred EEecCCCE-EEEEe-CCeEEEEEccCC-CCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEE
Q 010256 348 KFARNGRH-ILSRD-YMTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (514)
Q Consensus 348 ~~s~~g~~-l~~~~-~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 424 (514)
.+.+.|-- |++|+ +|.|++||++.+ .....++..|-... .+.+++..++....+|+|+. +.|+|
T Consensus 1263 slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yG------------s~lTal~VH~hapiiAsGs~-q~ikI 1329 (1387)
T KOG1517|consen 1263 SLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYG------------SALTALTVHEHAPIIASGSA-QLIKI 1329 (1387)
T ss_pred EeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccC------------ccceeeeeccCCCeeeecCc-ceEEE
Confidence 99986654 77775 599999999972 11122222222110 01448999999999999998 99999
Q ss_pred EecCCCceeeeeec-------CCCcceeEEEECCCCCceeecCCCCeEEEe
Q 010256 425 FGCSEGSAESTTLE-------ASKNPMRRQVQTPSRPSRPLGSLSGVVRRV 468 (514)
Q Consensus 425 wd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~ 468 (514)
|++... . ...++ ....++.+++|+|-.-++|.|+.|.+|.++
T Consensus 1330 y~~~G~-~-l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1330 YSLSGE-Q-LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred EecChh-h-hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 998743 2 22222 233567899999999999999999999994
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=7.3e-16 Score=133.49 Aligned_cols=192 Identities=15% Similarity=0.127 Sum_probs=136.3
Q ss_pred EEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE-EeCCeE
Q 010256 286 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTL 364 (514)
Q Consensus 286 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~i 364 (514)
..++|+++| ..+++|+.||++|+|+..+.... .....|...|.++.|+|||++|++ +.+ ..
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~----------------l~e~~~~~eV~DL~FS~dgk~lasig~d-~~ 209 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTI----------------LEEIAHHAEVKDLDFSPDGKFLASIGAD-SA 209 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhh----------------hhhHhhcCccccceeCCCCcEEEEecCC-ce
Confidence 789999999 89999999999999996554432 113456689999999999999998 455 89
Q ss_pred EEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC---CE--EEEEeCCCcEEEEecCCCce----eee
Q 010256 365 KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG---GR--VATGSYSNLFRVFGCSEGSA----EST 435 (514)
Q Consensus 365 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~--l~s~~~dg~i~iwd~~~~~~----~~~ 435 (514)
+||++++ +..+......... .. ...+.|+.|+ .+ .+....-+.|+.|++..... ...
T Consensus 210 ~VW~~~~-g~~~a~~t~~~k~----------~~---~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~ 275 (398)
T KOG0771|consen 210 RVWSVNT-GAALARKTPFSKD----------EM---FSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLR 275 (398)
T ss_pred EEEEecc-CchhhhcCCcccc----------hh---hhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchh
Confidence 9999998 6666555422111 00 1267888777 33 33334556778777654322 112
Q ss_pred eecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEE-ecCcEEE
Q 010256 436 TLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA-ASNSLYM 511 (514)
Q Consensus 436 ~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~-~~~~~~i 511 (514)
....-...+.+++.+++|+++|.|+.||.|-+++..++.. +..-...|...|+.+.|+||.++++.. ++....+
T Consensus 276 ~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~--~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 276 KKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR--LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred hhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee--eEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 2223345789999999999999999999999966665552 222233588999999999999999954 4555444
No 203
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.72 E-value=4.6e-15 Score=124.26 Aligned_cols=320 Identities=13% Similarity=0.139 Sum_probs=197.3
Q ss_pred ccceEEEEEcCCCCeEEEe-cCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATG-DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
-+.|..+.|..|..+++++ ..++.|.+|++...+ ....+.... .
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-----------------------w~ckIdeg~------------a 92 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE-----------------------WYCKIDEGQ------------A 92 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecce-----------------------eEEEeccCC------------C
Confidence 3678889999988776655 578899999986443 223333333 7
Q ss_pred ceeEEEEeeCCCCcE-EEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 114 KINKIRWCQSANSAL-YLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~-l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
++.+++| +|+|+. |.+..-|-.|.+|.+.+.+...+...+. .+ ..++|.|||+...+....
T Consensus 93 gls~~~W--SPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~---------~~-------kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 93 GLSSISW--SPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKT---------NV-------KGYAFHPDGQFCAILSRR 154 (447)
T ss_pred cceeeeE--CCCcceEeeeecceeEEEEEEeccceeEEeccccc---------Cc-------eeEEECCCCceeeeeecc
Confidence 7999999 567744 5566789999999999887554433221 11 278999999987322211
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-c--CCeEEEEeccCCCceee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFN 269 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~--d~~i~iwd~~~~~~~~~ 269 (514)
...+++-..+ -+-|. ..+.+ .-.+-....+.|+|||+.|+.= . +-.|..|..
T Consensus 155 DCkdyv~i~~----c~~W~------------ll~~f-~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~-------- 209 (447)
T KOG4497|consen 155 DCKDYVQISS----CKAWI------------LLKEF-KLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER-------- 209 (447)
T ss_pred cHHHHHHHHh----hHHHH------------HHHhc-CCCcccccCceECCCCcEEEEecchhhheeeeeee--------
Confidence 1111110000 00011 11111 2334556789999999888763 1 333333221
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccc---------------------c------
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH---------------------S------ 322 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~---------------------~------ 322 (514)
.-.+..++|+|.+ ++|+.|+.|+.+|+.+--+-+...+. .
T Consensus 210 ------------~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~c 276 (447)
T KOG4497|consen 210 ------------GLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHC 276 (447)
T ss_pred ------------ccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccc
Confidence 2446788999988 89999999999988654322111000 0
Q ss_pred -----------------cceeccCCCCcc------ceeeccccceeEEEEecCCCEEEEEeC---CeEEEEEccCCCCce
Q 010256 323 -----------------KLFEEQEAPGTR------SFFTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGPV 376 (514)
Q Consensus 323 -----------------~~~~~~~~~~~~------~~~~~~~~~i~~~~~s~~g~~l~~~~~---~~i~iwd~~~~~~~~ 376 (514)
..++....+... .-+......+.-++|++|..++++..| ..+.+||++. .+..
T Consensus 277 Lsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l~ 355 (447)
T KOG4497|consen 277 LSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKLH 355 (447)
T ss_pred cccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhhh
Confidence 000000000000 011122346778999999999999754 7899999985 4433
Q ss_pred eeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCce
Q 010256 377 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR 456 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 456 (514)
..+... +. |....|+|....|+.+....++++|.... ....-.....-.|..+.|..+|..+
T Consensus 356 avLiQk-~p---------------iraf~WdP~~prL~vctg~srLY~W~psg--~~~V~vP~~GF~i~~l~W~~~g~~i 417 (447)
T KOG4497|consen 356 AVLIQK-HP---------------IRAFEWDPGRPRLVVCTGKSRLYFWAPSG--PRVVGVPKKGFNIQKLQWLQPGEFI 417 (447)
T ss_pred hhhhhc-cc---------------eeEEEeCCCCceEEEEcCCceEEEEcCCC--ceEEecCCCCceeeeEEecCCCcEE
Confidence 333222 22 22788999988888887778899998864 3333334444678899999999999
Q ss_pred eecCCCCe
Q 010256 457 PLGSLSGV 464 (514)
Q Consensus 457 ~s~s~d~~ 464 (514)
+..+.|..
T Consensus 418 ~l~~kDaf 425 (447)
T KOG4497|consen 418 VLCGKDAF 425 (447)
T ss_pred EEEcCCce
Confidence 88887753
No 204
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.72 E-value=1.4e-13 Score=133.09 Aligned_cols=320 Identities=23% Similarity=0.388 Sum_probs=220.0
Q ss_pred cceEEEEE-cCCCC-eEEEecC-CCeEEEEEecC-CcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 36 DIISAIEF-DKSGD-HLATGDR-GGRVVLFERTD-TRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 36 ~~V~~~~~-s~~g~-~l~tg~~-dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
..+..+.+ ++++. +++..+. |+.+.+|+... .. ....+..|.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----------------------~~~~~~~~~----------- 155 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK-----------------------LIRTLEGHS----------- 155 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe-----------------------EEEEEecCc-----------
Confidence 46778887 88887 5555444 99999999875 22 345677787
Q ss_pred ccceeEEEEeeCCCCcEEEEeeC-CCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 112 EEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|..+.|. +++..+++++. |+.+++|++..+........+ ...+. .+.|+|++..+
T Consensus 156 -~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~-------~~~~~~~~~~~---- 213 (466)
T COG2319 156 -ESVTSLAFS--PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH--------TDPVS-------SLAFSPDGGLL---- 213 (466)
T ss_pred -ccEEEEEEC--CCCCEEEecCCCCCceEEEEcCCCceEEeeccC--------CCceE-------EEEEcCCcceE----
Confidence 789999994 55667888875 999999999986555544442 23333 77888888732
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+++++.++.+++|+ ... .......+.+|.... ...|+|++..++++ .|+.+++|+.........
T Consensus 214 -------~~~~~~d~~i~~wd-~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 278 (466)
T COG2319 214 -------IASGSSDGTIRLWD-LST------GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR 278 (466)
T ss_pred -------EEEecCCCcEEEEE-CCC------CcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEE
Confidence 14458999999997 221 112221236676665 34899999888877 999999999986654222
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
. +..|...+.++.|+|++ ..+++++.|+.+++||+++...... .. ...|...+..+.|
T Consensus 279 ~-------~~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~----~~----------~~~~~~~~~~~~~ 336 (466)
T COG2319 279 T-------LSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSS----LT----------LKGHEGPVSSLSF 336 (466)
T ss_pred E-------EecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCceEEE----ee----------ecccCCceEEEEE
Confidence 1 24578899999999977 6777788898999998887654321 11 1234456888999
Q ss_pred ecCCCEEEEE--eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEE-EeCCCcEEEEe
Q 010256 350 ARNGRHILSR--DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT-GSYSNLFRVFG 426 (514)
Q Consensus 350 s~~g~~l~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~dg~i~iwd 426 (514)
.+++..++.+ .++.+.+|++.. ............ +..+.+++ ...++. +..++.+.+|+
T Consensus 337 ~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~~~~-~~~~~~~~~~~~~~~~~~ 398 (466)
T COG2319 337 SPDGSLLVSGGSDDGTIRLWDLRT-GKPLKTLEGHSN----------------VLSVSFSP-DGRVVSSGSTDGTVRLWD 398 (466)
T ss_pred CCCCCEEEEeecCCCcEEeeecCC-CceeEEecCCce----------------EEEEEECC-CCCEEEEecCCCceEEEe
Confidence 4332455554 448899999986 332222221111 22788888 544444 68899999999
Q ss_pred cCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 427 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 427 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
....... .....+...+....+.+++..+++++.+..+++
T Consensus 399 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (466)
T COG2319 399 LSTGSLL-RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRL 438 (466)
T ss_pred cccCeee-eeccCCCCcEEEEEECCCCcEEEEecCCCcEEE
Confidence 9876433 222222278888999999999999999999998
No 205
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.70 E-value=3.7e-15 Score=124.42 Aligned_cols=240 Identities=13% Similarity=0.096 Sum_probs=168.5
Q ss_pred ccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 233 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
..+|+|.+|++|+..++.+ ....|.||.....+.-.. .+++..|...|+.|+|+|.. +.|++++.|+.-++|.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~-----~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP-----AHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWT 83 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCcee-----ceehhhhCcceeEEeecCCC-CceeEccCCCCccccc
Confidence 3789999999999999999 889999999885442211 14678899999999999998 8999999999999999
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
...+..-.. ...+..++...+++.|+|.+..+++|+. ..|.||-++.+..- =..-|-.
T Consensus 84 ~~~~~~Wkp-------------tlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW--WVsKhik------ 142 (361)
T KOG1523|consen 84 QPSGGTWKP-------------TLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW--WVSKHIK------ 142 (361)
T ss_pred cCCCCeecc-------------ceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccce--ehhhhhC------
Confidence 854432111 1224445678999999999999999877 88888887642110 0000000
Q ss_pred cccccCCc-cceeeEEEcCCCCEEEEEeCCCcEEEEecCCC-----------------ceeeeeecCCCcceeEEEECCC
Q 010256 391 DLYENDSI-FDKFECCLSGDGGRVATGSYSNLFRVFGCSEG-----------------SAESTTLEASKNPMRRQVQTPS 452 (514)
Q Consensus 391 ~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-----------------~~~~~~~~~~~~~v~~~~~~~~ 452 (514)
..| ..|++++|+|++-+|++|+.|+..|||...-. .++...+....+.+..+.|+|+
T Consensus 143 -----kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s 217 (361)
T KOG1523|consen 143 -----KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS 217 (361)
T ss_pred -----CccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence 000 02559999999999999999999999975311 0111223345678999999999
Q ss_pred CCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEec
Q 010256 453 RPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS 506 (514)
Q Consensus 453 ~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~ 506 (514)
|..|+-.+.|.++.+.+...+.+..... . ...-..+++.|-.+...++.|-+
T Consensus 218 G~~lawv~Hds~v~~~da~~p~~~v~~~-~-~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 218 GNRLAWVGHDSTVSFVDAAGPSERVQSV-A-TAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred CCEeeEecCCCceEEeecCCCchhccch-h-hccCCceeeEeecCCceeecCCC
Confidence 9999999999999995444443111111 1 11255677777666555544444
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.5e-15 Score=144.32 Aligned_cols=231 Identities=13% Similarity=0.149 Sum_probs=147.9
Q ss_pred CCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-c---CCeEEEEeccCCCceeeeeccCCCccc
Q 010256 204 VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANME 279 (514)
Q Consensus 204 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~ 279 (514)
+..|.+|| ....+ .+. +..|...+...+|+|||+.|+.. . +..|++||+.+++... +. .+.
T Consensus 183 ~~~i~i~d-~dg~~-------~~~-lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~-----~~~ 247 (429)
T PRK01742 183 PYEVRVAD-YDGFN-------QFI-VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VA-----SFR 247 (429)
T ss_pred eEEEEEEC-CCCCC-------ceE-eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-Ee-----cCC
Confidence 46788877 32221 111 35667789999999999999876 3 2479999998654321 10 222
Q ss_pred ccCCceEEEEEecCCCcEEEEE-ecCCeEEEE--EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEE
Q 010256 280 DLTEVITSAEFHPTHCNMLAYS-SSKGSIRLI--DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (514)
Q Consensus 280 ~~~~~i~~v~~~p~~~~~l~~~-~~dg~i~~w--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 356 (514)
++ ...++|+||| +.|+.+ +.+|.+.|| |+.++.. .. +..+...+....|+|||+.|
T Consensus 248 g~---~~~~~wSPDG-~~La~~~~~~g~~~Iy~~d~~~~~~-----~~------------lt~~~~~~~~~~wSpDG~~i 306 (429)
T PRK01742 248 GH---NGAPAFSPDG-SRLAFASSKDGVLNIYVMGANGGTP-----SQ------------LTSGAGNNTEPSWSPDGQSI 306 (429)
T ss_pred Cc---cCceeECCCC-CEEEEEEecCCcEEEEEEECCCCCe-----Ee------------eccCCCCcCCEEECCCCCEE
Confidence 22 3468999999 666655 468876665 5544432 11 22233567889999999988
Q ss_pred EEEeC--CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceee
Q 010256 357 LSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 434 (514)
Q Consensus 357 ~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 434 (514)
+..++ +...||++...+.....+ .+.. ....|+|||++|+..+.++ +.+||+.++....
T Consensus 307 ~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~-----------------~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~ 367 (429)
T PRK01742 307 LFTSDRSGSPQVYRMSASGGGASLV-GGRG-----------------YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV 367 (429)
T ss_pred EEEECCCCCceEEEEECCCCCeEEe-cCCC-----------------CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE
Confidence 76543 788888876533333222 2211 1567999999998887754 6669998875432
Q ss_pred eeecCCCcceeEEEECCCCCceeecCCCCeEEEe-----eCCCCCccccCCcccccccceEEEEEcCCC
Q 010256 435 TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV-----KGADNSALDANGNAFDFSMKLLHLAWHPSE 498 (514)
Q Consensus 435 ~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~-----~~~~~~~~~~~~~~~~~~~~v~~~~~spd~ 498 (514)
....+ ....+.|+|++++|++++.++..+++ +|.... .+ ..+.+.+..++|||--
T Consensus 368 -lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~--~l----~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 368 -LSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA--RL----PGSDGQVKFPAWSPYL 427 (429)
T ss_pred -ecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE--Ec----cCCCCCCCCcccCCCC
Confidence 11222 23567899999999999988877761 232221 12 2356778899999853
No 207
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=4.4e-14 Score=119.97 Aligned_cols=256 Identities=13% Similarity=0.159 Sum_probs=158.6
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
-.+..++|++.-..+|++..|-.|++|+-..... ..++.-. +..|
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~p------------------------t~Lks~s-----------Qrnv 143 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP------------------------TKLKSVS-----------QRNV 143 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCC------------------------ceecchh-----------hcce
Confidence 4577899999777789999999999999665221 1222211 2669
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccE-EEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
++++|-|-.. ..|+.|+. +-|.+|.....- ....
T Consensus 144 tclawRPlsa-selavgCr-~gIciW~~s~tln~~r~------------------------------------------- 178 (445)
T KOG2139|consen 144 TCLAWRPLSA-SELAVGCR-AGICIWSDSRTLNANRN------------------------------------------- 178 (445)
T ss_pred eEEEeccCCc-ceeeeeec-ceeEEEEcCcccccccc-------------------------------------------
Confidence 9999976443 35666655 678999765321 0000
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeec
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~ 272 (514)
..+.......+.. -.+| .+|+++.|++||..++++ .|..|.|||..++.... +
T Consensus 179 ----~~~~s~~~~qvl~-----------------~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p-L-- 233 (445)
T KOG2139|consen 179 ----IRMMSTHHLQVLQ-----------------DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP-L-- 233 (445)
T ss_pred ----cccccccchhhee-----------------CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc-c--
Confidence 0000111111100 1455 689999999999999998 79999999999765432 1
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 352 (514)
+ ....+.+.-+.|+||+ .+|..++-|+..++|+........+ +.. ..+.|....|+|+
T Consensus 234 -~----~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~er----w~l------------gsgrvqtacWspc 291 (445)
T KOG2139|consen 234 -I----PKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKER----WIL------------GSGRVQTACWSPC 291 (445)
T ss_pred -c----ccCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceecc----eec------------cCCceeeeeecCC
Confidence 1 1235678899999999 8999999999999997654322111 111 1147999999999
Q ss_pred CCEEEEEeCCeEEEEEccCCCCceeeeeecccc--ccccccccccC-------CccceeeEEEcCCCCEEEEEeCC
Q 010256 353 GRHILSRDYMTLKLWDINMDSGPVATFQVHEHL--RPKLCDLYEND-------SIFDKFECCLSGDGGRVATGSYS 419 (514)
Q Consensus 353 g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~s~~~d 419 (514)
|++|+....+.-++|.+..+++...... .... ...+.++.... .-.+..+++|.|.|++||+.-..
T Consensus 292 GsfLLf~~sgsp~lysl~f~~~~~~~~~-~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 292 GSFLLFACSGSPRLYSLTFDGEDSVFLR-PQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred CCEEEEEEcCCceEEEEeecCCCccccC-cccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 9999877666667777765333222110 0000 00011111100 00123489999999999976543
No 208
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.7e-15 Score=125.48 Aligned_cols=266 Identities=10% Similarity=0.133 Sum_probs=165.5
Q ss_pred cccccccceEEEEEcC--CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 30 EEVQEVDIISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~--~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
+..+|...++.++|.. ....+.+++.||+|++||+...... ....+.+|.+
T Consensus 65 ~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~---------------------a~~~~~~~~~------ 117 (376)
T KOG1188|consen 65 EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES---------------------ARISWTQQSG------ 117 (376)
T ss_pred eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh---------------------hheeccCCCC------
Confidence 4567888899999987 4568999999999999999776543 1122333321
Q ss_pred ccccccceeEEEEeeCCCCcEEEEee----CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCC
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLST----NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~~----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 183 (514)
.+..+++- ..++..+++|+ .|-.|.+||++..+.
T Consensus 118 -----~~f~~ld~--nck~~ii~~GtE~~~s~A~v~lwDvR~~qq----------------------------------- 155 (376)
T KOG1188|consen 118 -----TPFICLDL--NCKKNIIACGTELTRSDASVVLWDVRSEQQ----------------------------------- 155 (376)
T ss_pred -----CcceEeec--cCcCCeEEeccccccCceEEEEEEeccccc-----------------------------------
Confidence 34555554 33555666663 456777888775431
Q ss_pred CccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEec
Q 010256 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNL 261 (514)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~ 261 (514)
.++.+...|.+.|+++.|+|. .++|++| .||.|.+||+
T Consensus 156 ----------------------------------------~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 156 ----------------------------------------LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred ----------------------------------------hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 122234789999999999996 6788899 8999999999
Q ss_pred cCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccc
Q 010256 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (514)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (514)
+.....-.+. +.-.+...|.++.|..++-..|.+-+......+|+++.+... ..++.+........-....
T Consensus 196 ~~d~EeDaL~-----~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~----~~~~~~~~~~~d~r~~~~~ 266 (376)
T KOG1188|consen 196 KKDNEEDALL-----HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE----TWLENPDVSADDLRKEDNC 266 (376)
T ss_pred CCCcchhhHH-----HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh----hcccCccchhhhHHhhhhh
Confidence 8543321111 223467789999999887557888999999999999987742 1111110000000000000
Q ss_pred cceeEEEEecCCCEEEE-EeC-CeEEEEEccC--C---CCceeeeee-ccccccccccccccCCccceeeEEEcCCCCEE
Q 010256 342 ASISDIKFARNGRHILS-RDY-MTLKLWDINM--D---SGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~-~~~-~~i~iwd~~~--~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (514)
..+-......+...++. |.+ +...++-+.. . .+.+..+.+ |...+. ++.|...+.++
T Consensus 267 dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR---------------~i~~~~~~~~l 331 (376)
T KOG1188|consen 267 DYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVR---------------DILFDVKNDVL 331 (376)
T ss_pred hheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHH---------------HHhhhccccee
Confidence 11111111223444444 454 5555554441 1 233444554 333322 67788888999
Q ss_pred EEEeCCCcEEEEecC
Q 010256 414 ATGSYSNLFRVFGCS 428 (514)
Q Consensus 414 ~s~~~dg~i~iwd~~ 428 (514)
.||+.||.+.+|..+
T Consensus 332 ~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 332 YTGGEDGLLQAWKVE 346 (376)
T ss_pred eccCCCceEEEEecC
Confidence 999999999999964
No 209
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.69 E-value=1e-14 Score=142.26 Aligned_cols=292 Identities=12% Similarity=0.149 Sum_probs=163.1
Q ss_pred ccccccchhhccccCcccccccccceEEEEEcCCC-CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccce
Q 010256 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (514)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g-~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (514)
++..|++.-.+ -.+...|...|..++.++.. .+++||+.||+|++|+...-... + ...+
T Consensus 1030 p~~gW~p~G~l----VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~----------~------~s~r 1089 (1431)
T KOG1240|consen 1030 PPPGWNPRGIL----VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE----------G------GSAR 1089 (1431)
T ss_pred CCCCCCccceE----eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC----------c------ceee
Confidence 34557665532 12455788999999988755 99999999999999997633211 0 0011
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
...++..- ...+.++.+++ ++..+|.++.||.|++.++...+.................+.+..+
T Consensus 1090 S~ltys~~------------~sr~~~vt~~~--~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m- 1154 (1431)
T KOG1240|consen 1090 SELTYSPE------------GSRVEKVTMCG--NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSM- 1154 (1431)
T ss_pred eeEEEecc------------CCceEEEEecc--CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEe-
Confidence 11111111 26788888865 4558999999999999998763211110000000000001111110
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 251 (514)
.++....+ + ..++.+...+.|..||+....+. ... . .....+.|++++.+|.+++++.|
T Consensus 1155 -----~a~~~~~~---------S-~~lvy~T~~~~iv~~D~r~~~~~----w~l-k-~~~~hG~vTSi~idp~~~WlviG 1213 (1431)
T KOG1240|consen 1155 -----HAFTAIVQ---------S-HVLVYATDLSRIVSWDTRMRHDA----WRL-K-NQLRHGLVTSIVIDPWCNWLVIG 1213 (1431)
T ss_pred -----eccccccc---------c-eeEEEEEeccceEEecchhhhhH----Hhh-h-cCccccceeEEEecCCceEEEEe
Confidence 01111111 0 13366777788888883211111 000 1 13345789999999999999999
Q ss_pred -cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCC--cEEEEEe--cCCeEEEEEcCCCcccccccccee
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC--NMLAYSS--SKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~--~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
..|.+.+||++=+ ..+..+ . ..+..+++.+..+|..+ ...++++ ..+.|.+|++.+|... +++.
T Consensus 1214 ts~G~l~lWDLRF~-~~i~sw-----~-~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~----~vl~ 1282 (1431)
T KOG1240|consen 1214 TSRGQLVLWDLRFR-VPILSW-----E-HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ----TVLW 1282 (1431)
T ss_pred cCCceEEEEEeecC-ceeecc-----c-CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce----EEEE
Confidence 9999999999843 333221 1 22457788888776543 4444444 4788999999998542 2222
Q ss_pred cc-CCCCccceee------ccccceeEEEEecCCCEEEE-EeCCeEEEEEccC
Q 010256 327 EQ-EAPGTRSFFT------EIIASISDIKFARNGRHILS-RDYMTLKLWDINM 371 (514)
Q Consensus 327 ~~-~~~~~~~~~~------~~~~~i~~~~~s~~g~~l~~-~~~~~i~iwd~~~ 371 (514)
.. ..+....... .+.-......+...+.++.+ |+|..|+.||...
T Consensus 1283 ~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1283 ASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred cCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 21 1111000000 11112222333333445555 5679999999875
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=1.3e-14 Score=121.10 Aligned_cols=231 Identities=13% Similarity=0.185 Sum_probs=161.1
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
..+|+|.+|++|+..+|.+.....|.||...... -+....++..|+ ..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~--------------------~w~~~htls~Hd------------~~ 57 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD--------------------LWEPAHTLSEHD------------KI 57 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCC--------------------CceeceehhhhC------------cc
Confidence 4689999999999999999999999999987654 133567788888 88
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEc-CccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
|+.|+|.|. ...|++++.|+.-.+|.. ..++.+..+.
T Consensus 58 vtgvdWap~--snrIvtcs~drnayVw~~~~~~~Wkptlv---------------------------------------- 95 (361)
T KOG1523|consen 58 VTGVDWAPK--SNRIVTCSHDRNAYVWTQPSGGTWKPTLV---------------------------------------- 95 (361)
T ss_pred eeEEeecCC--CCceeEccCCCCccccccCCCCeecccee----------------------------------------
Confidence 999999654 448999999999999988 4443322211
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeec
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 272 (514)
+..+....+++.|+|.++.|++| ....|.+|-.+..+. .-.
T Consensus 96 -----------------------------------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd-WWV-- 137 (361)
T KOG1523|consen 96 -----------------------------------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND-WWV-- 137 (361)
T ss_pred -----------------------------------EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc-eeh--
Confidence 24456778999999999999999 788999998874332 110
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCc--cceeeccccceeEEEEe
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT--RSFFTEIIASISDIKFA 350 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~s 350 (514)
..+.-..+...|++++|+|++ -+++.|+.|+..|+|...-...-.++...--+.+.|.- ...+....+.+..+.|+
T Consensus 138 -sKhikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs 215 (361)
T KOG1523|consen 138 -SKHIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS 215 (361)
T ss_pred -hhhhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC
Confidence 000123357889999999998 89999999999999975422211110000000000000 00112344789999999
Q ss_pred cCCCEEEE-EeCCeEEEEEccCCCCceeee
Q 010256 351 RNGRHILS-RDYMTLKLWDINMDSGPVATF 379 (514)
Q Consensus 351 ~~g~~l~~-~~~~~i~iwd~~~~~~~~~~~ 379 (514)
|+|..|+- +.|.++.+-|...+.+.+.++
T Consensus 216 ~sG~~lawv~Hds~v~~~da~~p~~~v~~~ 245 (361)
T KOG1523|consen 216 PSGNRLAWVGHDSTVSFVDAAGPSERVQSV 245 (361)
T ss_pred CCCCEeeEecCCCceEEeecCCCchhccch
Confidence 99999986 677999998887543333333
No 211
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.68 E-value=1.4e-16 Score=148.85 Aligned_cols=252 Identities=16% Similarity=0.169 Sum_probs=172.4
Q ss_pred cccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010256 229 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 307 (514)
+.+|...|+|+.|...|.++++| +|..++||.+++.... ..+.+|.+.|+.++.+.+. .++++++.|..|
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l--------As~rGhs~ditdlavs~~n-~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL--------ASCRGHSGDITDLAVSSNN-TMIAAASNDKVI 256 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh--------ccCCCCccccchhccchhh-hhhhhcccCceE
Confidence 37899999999999999999999 9999999998866544 3678999999999999887 899999999999
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCC-------------C
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDS-------------G 374 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~-------------~ 374 (514)
++|.+..+..+ ..+.+|++.|++++|+|-. .++.||++++||.+-.- .
T Consensus 257 rvWrl~~~~pv----------------svLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~ 317 (1113)
T KOG0644|consen 257 RVWRLPDGAPV----------------SVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKD 317 (1113)
T ss_pred EEEecCCCchH----------------HHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCccccc
Confidence 99999988763 4477888999999999975 44556999999987200 0
Q ss_pred ceeeeeeccccccccccc-cccCCccceeeEEEcCCC-----------CEEEEEeCCCcEEEEecCCCceeeeeecCCCc
Q 010256 375 PVATFQVHEHLRPKLCDL-YENDSIFDKFECCLSGDG-----------GRVATGSYSNLFRVFGCSEGSAESTTLEASKN 442 (514)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~-----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 442 (514)
.+..+............- ......+....++|..++ .+.+++-.+-.+.+|++.++ .+.+.+.+|..
T Consensus 318 ~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghsd 396 (1113)
T KOG0644|consen 318 LVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMGHSD 396 (1113)
T ss_pred ceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhccccc
Confidence 111111100000000000 000000111122333222 23444555677899999988 55588999999
Q ss_pred ceeEEEECCCCC-ceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEE
Q 010256 443 PMRRQVQTPSRP-SRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMY 512 (514)
Q Consensus 443 ~v~~~~~~~~~~-~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~ 512 (514)
.++.+.++|-.. ...+++.||...|.+-|.-.. +.....+ ...+..-+||+||..+++.. -+.++|+
T Consensus 397 ~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p--ik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 397 EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP--IKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred ceeeeeecCCCcHhhhhccCCCceEeeecccCCc--ceeeecc-cceeeccccCCCCceEecCCCCCceEEe
Confidence 999999998665 557889999999933332221 1111122 45566779999999998665 5555554
No 212
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=7.6e-14 Score=112.09 Aligned_cols=247 Identities=12% Similarity=0.126 Sum_probs=157.1
Q ss_pred ceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeecccccc---ccccccccccccCccCeEEEEECCCCCEEEEec
Q 010256 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN---LVAGCRRIYAHAHDYHINSISNNSDGETFISAD 252 (514)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 252 (514)
.-+++|.++++ +.+..+|.|.+.. +...... ...+.......+|.++|+.++|. ...|++|.
T Consensus 15 ~qa~sp~~~~l------------~agn~~G~iav~s-l~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 15 AQAISPSKQYL------------FAGNLFGDIAVLS-LKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHhhCCcceEE------------EEecCCCeEEEEE-ehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 44678888887 9999999999988 4443322 11121222227999999999998 55788887
Q ss_pred CCeEEEEeccCCCc---eeeeeccCCCccc--ccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceec
Q 010256 253 DLRINLWNLEISNQ---SFNIVDVKPANME--DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (514)
Q Consensus 253 d~~i~iwd~~~~~~---~~~~~~~~~~~~~--~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 327 (514)
||.|+-|..+...+ +.+++..+++... ..--.|+++-..|.. +-++.++.|+.++-||+++|+..
T Consensus 80 dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~--------- 149 (325)
T KOG0649|consen 80 DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQ--------- 149 (325)
T ss_pred CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEEE---------
Confidence 89999998764432 1222222221111 123457889999988 56666779999999999999862
Q ss_pred cCCCCccceeeccccceeEEEEe-cCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE
Q 010256 328 QEAPGTRSFFTEIIASISDIKFA-RNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (514)
..+.+|+..|.++.-- .+++.|-.+.||++|+||.++ ++.+..+........ +. ..+. .+-.+.
T Consensus 150 -------r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~-lR-p~~g-----~wigal 214 (325)
T KOG0649|consen 150 -------REYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPNL-LR-PDWG-----KWIGAL 214 (325)
T ss_pred -------EEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEeccccChhh-cC-cccC-----ceeEEE
Confidence 3467788899999884 445444445679999999998 888877765443210 00 0000 112344
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 407 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 407 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.-+..+|+.|+. ..+.+|++.+.++. +++ .-..++..+.|-. ..++++++-+.|.-
T Consensus 215 a~~edWlvCGgG-p~lslwhLrsse~t-~vf-pipa~v~~v~F~~--d~vl~~G~g~~v~~ 270 (325)
T KOG0649|consen 215 AVNEDWLVCGGG-PKLSLWHLRSSEST-CVF-PIPARVHLVDFVD--DCVLIGGEGNHVQS 270 (325)
T ss_pred eccCceEEecCC-CceeEEeccCCCce-EEE-ecccceeEeeeec--ceEEEeccccceee
Confidence 456678877654 67999999976443 222 2234455555543 35566665544444
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=5.1e-14 Score=119.60 Aligned_cols=244 Identities=11% Similarity=0.129 Sum_probs=156.0
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
..+..++|++.-..++++ .|-.|++|+-.. .....+ -......|++++|-|.+...|+.|+.. -|.+|..
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~L-------ks~sQrnvtclawRPlsaselavgCr~-gIciW~~ 169 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKL-------KSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSD 169 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCcee-------cchhhcceeEEEeccCCcceeeeeecc-eeEEEEc
Confidence 457889999987778888 899999999874 222111 112356799999999987888888875 5789987
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--CCeEEEEEccCCCCceeee-eecccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATF-QVHEHLRPKL 389 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~iwd~~~~~~~~~~~-~~~~~~~~~~ 389 (514)
.........++....+ ........+| .+|++++|.+||..+++++ +..|.|||..+ +..+... .+..+
T Consensus 170 s~tln~~r~~~~~s~~--~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~~~glgg----- 240 (445)
T KOG2139|consen 170 SRTLNANRNIRMMSTH--HLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPLIPKGLGG----- 240 (445)
T ss_pred Cccccccccccccccc--chhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCcccccccCCCc-----
Confidence 5433222212211111 1111223345 6899999999999999975 48999999997 4433322 22211
Q ss_pred ccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeec-CCCCeEEE-
Q 010256 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRR- 467 (514)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-s~d~~v~i- 467 (514)
+.-+.|||||.+|++++-|+..++|+....... ....-..+.|...+|+|+|++|+.. +..-.++-
T Consensus 241 -----------~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~-erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl 308 (445)
T KOG2139|consen 241 -----------FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTK-ERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSL 308 (445)
T ss_pred -----------eeeEEEcCCCCEEEEecccceeeeehhccccee-cceeccCCceeeeeecCCCCEEEEEEcCCceEEEE
Confidence 226899999999999999999999965432111 2222334489999999999976544 33333332
Q ss_pred -eeCCCCC--------ccccCCccc---------ccccceEEEEEcCCCCEEEEEecC
Q 010256 468 -VKGADNS--------ALDANGNAF---------DFSMKLLHLAWHPSENSIACAASN 507 (514)
Q Consensus 468 -~~~~~~~--------~~~~~~~~~---------~~~~~v~~~~~spd~~~l~~~~~~ 507 (514)
..+.... ...+..+.. --.+.+.+++|.|.|.+||+.-..
T Consensus 309 ~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 309 TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred eecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 1111111 000111111 125788999999999999987644
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=1.6e-12 Score=108.79 Aligned_cols=162 Identities=10% Similarity=0.207 Sum_probs=113.7
Q ss_pred ccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEE-EecCCeEEEEE
Q 010256 233 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKGSIRLID 311 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~-~~~dg~i~~wd 311 (514)
..+|.++.+.++ .|++.-++.|++|...+.-+....++.. . ....+.+++-+... .+||. |-.-|.|.|-|
T Consensus 94 ~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~----~-NPkGlC~~~~~~~k-~~LafPg~k~GqvQi~d 165 (346)
T KOG2111|consen 94 NSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETR----S-NPKGLCSLCPTSNK-SLLAFPGFKTGQVQIVD 165 (346)
T ss_pred ccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecc----c-CCCceEeecCCCCc-eEEEcCCCccceEEEEE
Confidence 367888888654 5777778899999987443333322211 1 11223333322222 34444 33468999999
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-C-eEEEEEccCCCCceeeeeecccccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-TLKLWDINMDSGPVATFQVHEHLRPKL 389 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~-~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (514)
+.....- +..++.+|.+.|.+++.+.+|..+|+++. | -|||||..+ +..+..+.......
T Consensus 166 L~~~~~~--------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~A--- 227 (346)
T KOG2111|consen 166 LASTKPN--------------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGVDRA--- 227 (346)
T ss_pred hhhcCcC--------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCCchh---
Confidence 8764421 23457788999999999999999999876 5 579999998 88888876554331
Q ss_pred ccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
++++++|||++.+||++|+.|+++||.+...
T Consensus 228 ----------~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 228 ----------DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred ----------eEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 2559999999999999999999999998754
No 215
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.64 E-value=1.4e-15 Score=133.00 Aligned_cols=268 Identities=13% Similarity=0.140 Sum_probs=191.6
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
-..+.+ +.+|++++.++..|.|-.+|..++++...+...
T Consensus 132 PY~~~y--trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~--------------------------------------- 170 (545)
T KOG1272|consen 132 PYHLDY--TRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM--------------------------------------- 170 (545)
T ss_pred Ceeeee--cCCccEEEecCCccceeeeecccceeeeeeehh---------------------------------------
Confidence 355666 678889999999999999998887755433322
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccC
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVK 274 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~ 274 (514)
..|.++.|-.+.+++|++....+++||-. +.....+
T Consensus 171 ---------------------------------------Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHCl---- 206 (545)
T KOG1272|consen 171 ---------------------------------------ETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCL---- 206 (545)
T ss_pred ---------------------------------------hhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeeh----
Confidence 34667888888889999988999999976 4333222
Q ss_pred CCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCC
Q 010256 275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 354 (514)
Q Consensus 275 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 354 (514)
. ....|..+.|.|.. -+|++++..|.++.-|+.+|+++.. +.. ..+.+..+.-+|-..
T Consensus 207 ----k-~~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~----~~t------------~~G~~~vm~qNP~Na 264 (545)
T KOG1272|consen 207 ----K-RHIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVAS----IRT------------GAGRTDVMKQNPYNA 264 (545)
T ss_pred ----h-hcCchhhhcccchh-heeeecccCCceEEEeechhhhhHH----HHc------------cCCccchhhcCCccc
Confidence 2 34678999999998 8999999999999999999987532 221 225677788888887
Q ss_pred EEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 355 HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 355 ~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
.+-.|.. |+|.+|.... ..++..+..|.+.+. ++++.++|+|++|.+.|..++|||+.....+
T Consensus 265 Vih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~---------------siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVS---------------SIAVDRGGRYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred eEEEcCCCceEEecCCCC-cchHHHHHhcCCCcc---------------eEEECCCCcEEeecccccceeEeeecccccc
Confidence 8888855 9999999997 888888888887754 9999999999999999999999999976433
Q ss_pred eeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccc--ccccceEEEEEcCCCCEEEEEecCcE
Q 010256 434 STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF--DFSMKLLHLAWHPSENSIACAASNSL 509 (514)
Q Consensus 434 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~--~~~~~v~~~~~spd~~~l~~~~~~~~ 509 (514)
.++.. ..+...+.+|.. -++..|....|.++.+..-...-....++ ...+.|..+.|.|-...|-+|...++
T Consensus 329 -~t~~t-p~~a~~ls~Sqk--glLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 329 -HTYRT-PHPASNLSLSQK--GLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred -ceeec-CCCccccccccc--cceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 33332 234455666544 34444455667772111110000111112 23568999999999998888775543
No 216
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.4e-13 Score=124.02 Aligned_cols=289 Identities=17% Similarity=0.244 Sum_probs=182.4
Q ss_pred cccccccceEEEEEcCCCCe-EEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccc
Q 010256 30 EEVQEVDIISAIEFDKSGDH-LATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~-l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (514)
.++.+...-+.|..+|||+| ||||...-.|++||+..-.. .|.-|-..
T Consensus 46 Qdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-------------------------KFERhlDa------ 94 (703)
T KOG2321|consen 46 QDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-------------------------KFERHLDA------ 94 (703)
T ss_pred HhcCCccccceeEecCCCcEEEEecccCCceEEEEccccee-------------------------eeeecccc------
Confidence 46789999999999999997 56777889999999874432 23333210
Q ss_pred cccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEE-EeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK-VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
+.|.-.-. +.|-..++.-..|++|.+.......... +..+. ..++++.
T Consensus 95 ----e~V~feiL--sDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~G-------------------RDm~y~~------ 143 (703)
T KOG2321|consen 95 ----EVVDFEIL--SDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFG-------------------RDMKYHK------ 143 (703)
T ss_pred ----cceeEEEe--ccchhhheEeecCceeeehhhcCeeeeeecCcCC-------------------ccccccC------
Confidence 22332222 3443445555667777665432221110 00000 0112211
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCc
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 266 (514)
.+.++++.|+.. .|.-++ .+. +..+..+ ....+.++++..++-..+|++| .+|.|-+||.++...
T Consensus 144 -----~scDly~~gsg~-evYRlN----LEq---GrfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr 209 (703)
T KOG2321|consen 144 -----PSCDLYLVGSGS-EVYRLN----LEQ---GRFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR 209 (703)
T ss_pred -----CCccEEEeecCc-ceEEEE----ccc---ccccccc-ccccccceeeeecCccceEEecccCceEEEecchhhhh
Confidence 112222333333 333223 111 1122222 3445789999999999999999 899999999996554
Q ss_pred eeeeeccCCCcccccC-----CceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccc
Q 010256 267 SFNIVDVKPANMEDLT-----EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (514)
Q Consensus 267 ~~~~~~~~~~~~~~~~-----~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (514)
+- .++... +...|. ..|+++.|+.+| -.+++|+.+|.+.|||+++.+.... +.| +..
T Consensus 210 v~-~l~~~~-~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~~-----kdh----------~~e 271 (703)
T KOG2321|consen 210 VG-TLDAAS-SVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLLV-----KDH----------GYE 271 (703)
T ss_pred he-eeeccc-ccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCceee-----ccc----------CCc
Confidence 33 222211 122233 349999999998 8999999999999999999775311 111 112
Q ss_pred cceeEEEEecC--CCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC
Q 010256 342 ASISDIKFARN--GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (514)
Q Consensus 342 ~~i~~~~~s~~--g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 419 (514)
-+|..+.|.+. +..+++.+...++|||-.+ +++...+...... ..+|+-|++.+++++-.+
T Consensus 272 ~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~-Gk~~asiEpt~~l----------------ND~C~~p~sGm~f~Ane~ 334 (703)
T KOG2321|consen 272 LPIKKLDWQDTDQQNKVVSMDKRILKIWDECT-GKPMASIEPTSDL----------------NDFCFVPGSGMFFTANES 334 (703)
T ss_pred cceeeecccccCCCceEEecchHHhhhccccc-CCceeeccccCCc----------------CceeeecCCceEEEecCC
Confidence 47888999774 5677777779999999997 8887776544432 278999999999999998
Q ss_pred CcEEEEecCC
Q 010256 420 NLFRVFGCSE 429 (514)
Q Consensus 420 g~i~iwd~~~ 429 (514)
+.+..|=+..
T Consensus 335 ~~m~~yyiP~ 344 (703)
T KOG2321|consen 335 SKMHTYYIPS 344 (703)
T ss_pred CcceeEEccc
Confidence 8887776654
No 217
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=2.1e-13 Score=116.33 Aligned_cols=231 Identities=15% Similarity=0.199 Sum_probs=154.9
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC--CeEEEE
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSIRLI 310 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d--g~i~~w 310 (514)
..+..+.|+.+...|..| .|| .++|..+...+... .......|..+-|+.. ++|..+.+ +.++++
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~--------~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~ 73 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS--------KDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVV 73 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc--------ccCCCeEEEEeecccc---eeEEEecCCCceEEEE
Confidence 456777799999999999 555 57787764444321 1223444556667653 55555543 458888
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
+++.+..+.. ..| ..+|.+|.++.+ .|++.-...|+|||++. .+.++++..-......
T Consensus 74 ~~Kk~~~ICe--~~f---------------pt~IL~VrmNr~--RLvV~Lee~IyIydI~~-MklLhTI~t~~~n~~g-- 131 (391)
T KOG2110|consen 74 HFKKKTTICE--IFF---------------PTSILAVRMNRK--RLVVCLEESIYIYDIKD-MKLLHTIETTPPNPKG-- 131 (391)
T ss_pred EcccCceEEE--Eec---------------CCceEEEEEccc--eEEEEEcccEEEEeccc-ceeehhhhccCCCccc--
Confidence 8876654311 111 146888888743 45554444599999997 8888887654222111
Q ss_pred cccccCCccceeeEEEcCCCCEEEEE--eCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE-
Q 010256 391 DLYENDSIFDKFECCLSGDGGRVATG--SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR- 467 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i- 467 (514)
+.++++++++.|||.- ...|.|.|||+.+-+ ...++..|.+++.+++|+++|.+||++|+.|+|-.
T Consensus 132 ----------l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~-~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRV 200 (391)
T KOG2110|consen 132 ----------LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ-PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRV 200 (391)
T ss_pred ----------eEeeccCCCCceEEecCCCCCceEEEEEcccce-eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEE
Confidence 2255555666788843 356899999998764 34788899999999999999999999999998765
Q ss_pred ---eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 468 ---VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 468 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
-+|.++. ++..-. ....|.+++|+||+.+|++.+ .+.+-+|.
T Consensus 201 f~v~~G~kl~--eFRRG~--~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 201 FSVPEGQKLY--EFRRGT--YPVSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred EEcCCccEee--eeeCCc--eeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 2333333 222111 256899999999999999776 56666663
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=9.4e-14 Score=131.67 Aligned_cols=216 Identities=13% Similarity=0.143 Sum_probs=135.4
Q ss_pred cCccCeEEEEECCCCCEEEEe----cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEE-EecCC
Q 010256 231 AHDYHINSISNNSDGETFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKG 305 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~-~~~dg 305 (514)
.+...+...+|+|||+.|+.. .+..|.+|++.+++.. .+ ......+..+.|+||| +.|+. .+.+|
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l--------~~~~~~~~~~~~SPDG-~~La~~~~~~g 265 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QV--------ASFPRHNGAPAFSPDG-SKLAFALSKTG 265 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-Ec--------cCCCCCcCCeEECCCC-CEEEEEEcCCC
Confidence 455678999999999998864 2457999999855422 11 1122334568999999 55554 45455
Q ss_pred --eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeee
Q 010256 306 --SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQV 381 (514)
Q Consensus 306 --~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~ 381 (514)
.|.+||+.++... .+ ..+...+....|+|||+.|+..++ +...||.+...+.....+..
T Consensus 266 ~~~I~~~d~~tg~~~-----~l------------t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~ 328 (429)
T PRK03629 266 SLNLYVMDLASGQIR-----QV------------TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITW 328 (429)
T ss_pred CcEEEEEECCCCCEE-----Ec------------cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeec
Confidence 5888999876531 11 111235678999999998887543 44555544322333333332
Q ss_pred ccccccccccccccCCccceeeEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceee
Q 010256 382 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 458 (514)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 458 (514)
.... ....+|+|||++|+..+.+ ..|++||+.++... .+... .......|+|||++|+.
T Consensus 329 ~~~~---------------~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~--~Lt~~-~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 329 EGSQ---------------NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLTDT-FLDETPSIAPNGTMVIY 390 (429)
T ss_pred CCCC---------------ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE--EeCCC-CCCCCceECCCCCEEEE
Confidence 2211 1168899999998876543 35888999877433 23221 12346789999999999
Q ss_pred cCCCCeEE---E--eeCCCCCccccCCcccccccceEEEEEcCC
Q 010256 459 GSLSGVVR---R--VKGADNSALDANGNAFDFSMKLLHLAWHPS 497 (514)
Q Consensus 459 ~s~d~~v~---i--~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 497 (514)
++.++... + .+|.... .+ ..+.+.+...+|+|-
T Consensus 391 ~s~~~~~~~l~~~~~~G~~~~--~l----~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 391 SSSQGMGSVLNLVSTDGRFKA--RL----PATDGQVKFPAWSPY 428 (429)
T ss_pred EEcCCCceEEEEEECCCCCeE--EC----ccCCCCcCCcccCCC
Confidence 99887533 3 2233322 12 235678889999983
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=5.9e-13 Score=126.23 Aligned_cols=168 Identities=15% Similarity=0.173 Sum_probs=106.5
Q ss_pred EEEECCCCCEEEEe--cCC--eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec-CCeEEEE--
Q 010256 238 SISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLI-- 310 (514)
Q Consensus 238 ~~~~~~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg~i~~w-- 310 (514)
.++|+|||+.|+.. .++ .|++||++++.. .. +..+...+....|+|+| +.|+..+. ++...+|
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~-~~--------lt~~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQ--------VTDGRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EE--------ccCCCCCcCceEECCCC-CEEEEEeCCCCCceEEEE
Confidence 46899999888754 344 588899975432 22 22234456789999999 66666554 4444555
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-C---CeEEEEEccCCCCceeeeeeccccc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~---~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
|+.++.. ..+ ..+........|+|||++|+... + ..|.+||+.. +. ...+.... .
T Consensus 317 d~~~g~~-----~~l------------t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt~~~-~- 375 (429)
T PRK03629 317 NINGGAP-----QRI------------TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GG-VQVLTDTF-L- 375 (429)
T ss_pred ECCCCCe-----EEe------------ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC-CC-eEEeCCCC-C-
Confidence 5555432 111 11113456788999999998742 2 4688889875 43 33332111 0
Q ss_pred cccccccccCCccceeeEEEcCCCCEEEEEeCCCc---EEEEecCCCceeeeeecCCCcceeEEEECCC
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL---FRVFGCSEGSAESTTLEASKNPMRRQVQTPS 452 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (514)
.....|+|||++|+.++.++. ++++++... ....+.+|...+...+|+|-
T Consensus 376 --------------~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~--~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 376 --------------DETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred --------------CCCceECCCCCEEEEEEcCCCceEEEEEECCCC--CeEECccCCCCcCCcccCCC
Confidence 015789999999998887764 677787533 33566677777888888763
No 220
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.61 E-value=6.3e-13 Score=122.05 Aligned_cols=329 Identities=10% Similarity=0.064 Sum_probs=180.5
Q ss_pred CeE-EEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCC
Q 010256 48 DHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (514)
Q Consensus 48 ~~l-~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~ 126 (514)
+++ ++-..+|.|.+.|..+.+. +..+.... ..-..+.| ++||
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~-----------------------~~~i~~~~------------~~h~~~~~--s~Dg 48 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKV-----------------------VARIPTGG------------APHAGLKF--SPDG 48 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SE-----------------------EEEEE-ST------------TEEEEEE---TT-S
T ss_pred cEEEEEecCCCEEEEEECCCCeE-----------------------EEEEcCCC------------CceeEEEe--cCCC
Confidence 344 4555789999999877663 34444322 22233556 7889
Q ss_pred cEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCC-CCC
Q 010256 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG-GVS 205 (514)
Q Consensus 127 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~ 205 (514)
+++++++.||.|.++|+.+++..........+ ..+++++||+.+ ++++ ..+
T Consensus 49 r~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~----------------~~i~~s~DG~~~------------~v~n~~~~ 100 (369)
T PF02239_consen 49 RYLYVANRDGTVSVIDLATGKVVATIKVGGNP----------------RGIAVSPDGKYV------------YVANYEPG 100 (369)
T ss_dssp SEEEEEETTSEEEEEETTSSSEEEEEE-SSEE----------------EEEEE--TTTEE------------EEEEEETT
T ss_pred CEEEEEcCCCeEEEEECCcccEEEEEecCCCc----------------ceEEEcCCCCEE------------EEEecCCC
Confidence 99999999999999999999877666554222 288999999987 5544 678
Q ss_pred cEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCC
Q 010256 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 283 (514)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 283 (514)
.+.++| ..+.+..................+.++..+|....++.. +.+.|.+-|....+.... .......
T Consensus 101 ~v~v~D-~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-------~~i~~g~ 172 (369)
T PF02239_consen 101 TVSVID-AETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-------TTIKVGR 172 (369)
T ss_dssp EEEEEE-TTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-------EEEE--T
T ss_pred ceeEec-cccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce-------eeecccc
Confidence 999888 332222111000000001134567888888888866655 568888888775533221 1122345
Q ss_pred ceEEEEEecCCCcEE-EEEecCCeEEEEEcCCCccccccccceeccCCCCccce-eeccc--cceeEEEEecCCCEEEE-
Q 010256 284 VITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF-FTEII--ASISDIKFARNGRHILS- 358 (514)
Q Consensus 284 ~i~~v~~~p~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~i~~~~~s~~g~~l~~- 358 (514)
......|+|++ +++ +....+..|-++|..+++.. ..++....+.+... -..|. +++... ...+...++
T Consensus 173 ~~~D~~~dpdg-ry~~va~~~sn~i~viD~~~~k~v----~~i~~g~~p~~~~~~~~php~~g~vw~~--~~~~~~~~~~ 245 (369)
T PF02239_consen 173 FPHDGGFDPDG-RYFLVAANGSNKIAVIDTKTGKLV----ALIDTGKKPHPGPGANFPHPGFGPVWAT--SGLGYFAIPL 245 (369)
T ss_dssp TEEEEEE-TTS-SEEEEEEGGGTEEEEEETTTTEEE----EEEE-SSSBEETTEEEEEETTTEEEEEE--EBSSSSEEEE
T ss_pred cccccccCccc-ceeeecccccceeEEEeeccceEE----EEeeccccccccccccccCCCcceEEee--ccccceeccc
Confidence 56788999999 555 44566789999999887653 22222111100000 00111 112111 123333333
Q ss_pred EeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE----eCCCcEEEEecCCCceee
Q 010256 359 RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG----SYSNLFRVFGCSEGSAES 434 (514)
Q Consensus 359 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~----~~dg~i~iwd~~~~~~~~ 434 (514)
-+...+.+||... .+.++++....... -+..+|+++++... ...+.|.++|.++.+ ..
T Consensus 246 ig~~~v~v~d~~~-wkvv~~I~~~G~gl----------------Fi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~-~~ 307 (369)
T PF02239_consen 246 IGTDPVSVHDDYA-WKVVKTIPTQGGGL----------------FIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK-VV 307 (369)
T ss_dssp EE--TTT-STTTB-TSEEEEEE-SSSS------------------EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE-EE
T ss_pred ccCCccccchhhc-CeEEEEEECCCCcc----------------eeecCCCCccEEeeccCCCCCceEEEEECcCcc-ee
Confidence 1223555777776 77788777654331 57889999999987 455899999999873 33
Q ss_pred eeec-CCCcceeEEEECCCCCceeecCCCC--eEEEeeCCCCC
Q 010256 435 TTLE-ASKNPMRRQVQTPSRPSRPLGSLSG--VVRRVKGADNS 474 (514)
Q Consensus 435 ~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~--~v~i~~~~~~~ 474 (514)
.++. +....+..+.|+++|+++-.+.+++ .|.+++...+.
T Consensus 308 ~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 308 KTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp E-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred EEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence 4443 2233577899999999765554443 57776555443
No 221
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=1.8e-13 Score=117.51 Aligned_cols=224 Identities=16% Similarity=0.197 Sum_probs=159.4
Q ss_pred CCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC--CeEEEEEcCCCcccccc
Q 010256 245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSIRLIDMRQSALCDTH 321 (514)
Q Consensus 245 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d--g~i~~wd~~~~~~~~~~ 321 (514)
...|++| .+|.+.+|..+.+...-. ++..+. ....+..+.-+|..+.++++|+.. ..+.+||+.+.+.+
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss----~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi--- 186 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSS----KLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI--- 186 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccc----cceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccceee---
Confidence 3466777 999999999884431100 000122 235577777777776788889999 89999999987543
Q ss_pred ccceeccCCCCccceeeccccceeEEEEecC--CCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCc
Q 010256 322 SKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSI 398 (514)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (514)
|.....+...--+. -.-+++++.|-+. ...|++++. +.+++||.+...+|+..+...+..
T Consensus 187 ---w~aKNvpnD~L~Lr-VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~------------- 249 (412)
T KOG3881|consen 187 ---WSAKNVPNDRLGLR-VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP------------- 249 (412)
T ss_pred ---eeccCCCCccccce-eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc-------------
Confidence 33332221111000 1136788999887 788888876 999999999878888888776654
Q ss_pred cceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCcccc
Q 010256 399 FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDA 478 (514)
Q Consensus 399 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~ 478 (514)
++++...|+|++|++|..-|.+..||++.+......+.+-.+.++++..+|.+++||+++.|+.|||.+..... +
T Consensus 250 --is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk---l 324 (412)
T KOG3881|consen 250 --ISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK---L 324 (412)
T ss_pred --ceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch---h
Confidence 33899999999999999999999999998866657799999999999999999999999999999994333210 1
Q ss_pred CCcccccccceEEEEEcCCCC
Q 010256 479 NGNAFDFSMKLLHLAWHPSEN 499 (514)
Q Consensus 479 ~~~~~~~~~~v~~~~~spd~~ 499 (514)
....+ ....++.+-+.++-+
T Consensus 325 l~kvY-vKs~lt~il~~~~~n 344 (412)
T KOG3881|consen 325 LHKVY-VKSRLTFILLRDDVN 344 (412)
T ss_pred hhhhh-hhccccEEEecCCcc
Confidence 11100 145566666655543
No 222
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.6e-13 Score=130.22 Aligned_cols=218 Identities=13% Similarity=0.115 Sum_probs=134.1
Q ss_pred ccCccCeEEEEECCCCCEEEEe-c---CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC
Q 010256 230 HAHDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 305 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg 305 (514)
..+...+.+.+|+|||+.|+.. . ...|.+||+.+++.. .+ ......+...+|+|||..++++.+.+|
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l--------~~~~g~~~~~~~SPDG~~la~~~~~~g 262 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VV--------ANFKGSNSAPAWSPDGRTLAVALSRDG 262 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-Ee--------ecCCCCccceEECCCCCEEEEEEccCC
Confidence 3556778899999999998875 2 346999999865432 21 222344568899999943444667788
Q ss_pred eEEEEEcC--CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeee
Q 010256 306 SIRLIDMR--QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQV 381 (514)
Q Consensus 306 ~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~ 381 (514)
...||.+. ++.. +. +..+........|+|||+.|+..++ +...||.+...+.....+..
T Consensus 263 ~~~Iy~~d~~~~~~-----~~------------lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~ 325 (427)
T PRK02889 263 NSQIYTVNADGSGL-----RR------------LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF 325 (427)
T ss_pred CceEEEEECCCCCc-----EE------------CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec
Confidence 77777653 3321 11 1112234566789999998886543 66677766532333333322
Q ss_pred ccccccccccccccCCccceeeEEEcCCCCEEEEEeCCC---cEEEEecCCCceeeeeecCCCcceeEEEECCCCCceee
Q 010256 382 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 458 (514)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 458 (514)
.... ....+|+|||++|+..+.++ .|++||+.+++.. .+... .......|+|++++|+.
T Consensus 326 ~g~~---------------~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~--~lt~~-~~~~~p~~spdg~~l~~ 387 (427)
T PRK02889 326 TGSY---------------NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT--ALTDT-TRDESPSFAPNGRYILY 387 (427)
T ss_pred CCCC---------------cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE--EccCC-CCccCceECCCCCEEEE
Confidence 2111 11578999999998776554 6999999877433 22222 23457899999999988
Q ss_pred cCCCCeEE-E----eeCCCCCccccCCcccccccceEEEEEcCC
Q 010256 459 GSLSGVVR-R----VKGADNSALDANGNAFDFSMKLLHLAWHPS 497 (514)
Q Consensus 459 ~s~d~~v~-i----~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 497 (514)
.+.++... + .+|.... .+ ..+.+.+...+|+|-
T Consensus 388 ~~~~~g~~~l~~~~~~g~~~~--~l----~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 388 ATQQGGRSVLAAVSSDGRIKQ--RL----SVQGGDVREPSWGPF 425 (427)
T ss_pred EEecCCCEEEEEEECCCCceE--Ee----ecCCCCCCCCccCCC
Confidence 87655322 2 2222111 11 123567778888874
No 223
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=6.1e-14 Score=125.52 Aligned_cols=181 Identities=19% Similarity=0.184 Sum_probs=128.1
Q ss_pred cccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCC-CcEEEEEecCCe
Q 010256 229 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH-CNMLAYSSSKGS 306 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~-~~~l~~~~~dg~ 306 (514)
+.||.+.|++++|+.+|.+|++| +|-.+.|||.-..+....+ -.+|...|.++.|-|.. ..++++|+.|..
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI-------~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI-------STGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee-------ecccccceeEEeeeccCCCeEEEeccCcce
Confidence 58999999999999999999999 9999999999854444332 46799999999999853 368889999999
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC-CEEEEE-eCCeEEEEEccCCCCceeeeeeccc
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSR-DYMTLKLWDINMDSGPVATFQVHEH 384 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~ 384 (514)
|++||+...+.-. ..+....+...+.-|...|..++-.|++ ..+.++ .||+|+-+|++.+..+......+..
T Consensus 119 i~lfdl~~~~~~~------~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~ 192 (758)
T KOG1310|consen 119 IKLFDLDSSKEGG------MDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI 192 (758)
T ss_pred EEEEecccccccc------cccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH
Confidence 9999998633210 0011111223345577889999999988 455555 5699999999864444333333332
Q ss_pred cccccccccccCCccceeeEEEcCCC-CEEEEEeCCCcEEEEecC
Q 010256 385 LRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~ 428 (514)
...... ......++.++|.. .+|+.|+.|--.++||..
T Consensus 193 l~ny~~------~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 193 LVNYNP------QLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred HHHhch------hhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 221111 11123388999865 578899999999999964
No 224
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=1.1e-11 Score=111.97 Aligned_cols=312 Identities=10% Similarity=0.112 Sum_probs=183.1
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
....+..++|++|+++|.+. +..++|++....... ..... ..
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~---lt~~~----------------------------------~~ 75 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVV---LCVEL----------------------------------KK 75 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEE---EEecc----------------------------------ce
Confidence 34478899999999999875 567999998766421 00111 12
Q ss_pred eeEEEEeeCCCCcEEEEe-----eC-----CCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCC
Q 010256 115 INKIRWCQSANSALYLLS-----TN-----DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~-----~~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 184 (514)
+.++.|+ +.|.+|.+= .. .-.+++|+++++.....+.... ...+ .+.|++|..
T Consensus 76 ~~~L~fS--P~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~--------------Q~~W-~~qfs~dEs 138 (566)
T KOG2315|consen 76 TYDLLFS--PKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKM--------------QNGW-VPQFSIDES 138 (566)
T ss_pred eeeeeec--ccccccccccccccccCCCCCCCceeeeeeccceehhheehhh--------------hcCc-ccccccchh
Confidence 4555552 333344331 11 3457799998854433332221 1112 556777766
Q ss_pred ccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC--CEEEE------ecCCeE
Q 010256 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFIS------ADDLRI 256 (514)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s------~~d~~i 256 (514)
. +.--..+.+.+|+ +.+... ....-|...|..+.++|.+ ..+|+ |.-..|
T Consensus 139 l-------------~arlv~nev~f~~-~~~f~~--------~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~v 196 (566)
T KOG2315|consen 139 L-------------AARLVSNEVQFYD-LGSFKT--------IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASV 196 (566)
T ss_pred h-------------hhhhhcceEEEEe-cCCccc--------eeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEE
Confidence 5 3344556788887 333221 1113466788999999873 34444 135679
Q ss_pred EEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec--C---------CeEEEEEcCCCccccccccce
Q 010256 257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--K---------GSIRLIDMRQSALCDTHSKLF 325 (514)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~--d---------g~i~~wd~~~~~~~~~~~~~~ 325 (514)
+||........ ..+.. .++ ....=..+.|++-|..+|+.++. | .+++++++..... .+
T Consensus 197 ri~~~~~~~~~-~~~a~--ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~------~V 265 (566)
T KOG2315|consen 197 RIYKYPEEGQH-QPVAN--KSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV------SV 265 (566)
T ss_pred EEecccccccc-chhhh--ccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE------EE
Confidence 99987622211 11000 111 12222456788777545554443 3 3567777662221 11
Q ss_pred eccCCCCccceeeccccceeEEEEecCCCEEEEE-eC--CeEEEEEccCCCCceeeeeeccccccccccccccCCcccee
Q 010256 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 402 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 402 (514)
... ..++|.++.|+|+|+-+++. +. ..+.|||++ +.++..+.. +..+
T Consensus 266 ~L~-----------k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~e--gpRN--------------- 315 (566)
T KOG2315|consen 266 PLL-----------KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFPE--GPRN--------------- 315 (566)
T ss_pred ecC-----------CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCCC--CCcc---------------
Confidence 111 13799999999999888774 33 899999998 676665543 3332
Q ss_pred eEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 403 ECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 403 ~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
++-|+|.|++|+.++-+ |.+-|||+.+. +.+..++... -+-..|+|||++++++...=.+|+
T Consensus 316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPNR-KLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRV 380 (566)
T ss_pred ceEECCCCCEEEEeecCCCCCceEEEeccch-hhccccccCC--ceEEEEcCCCcEEEEEeccccEEe
Confidence 78899999999987754 78999999984 3333333322 234567777777777765444444
No 225
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.58 E-value=1.9e-13 Score=113.77 Aligned_cols=148 Identities=18% Similarity=0.315 Sum_probs=102.5
Q ss_pred EEEEECCCCCEEEEe-c----------CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEE--Eec
Q 010256 237 NSISNNSDGETFISA-D----------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY--SSS 303 (514)
Q Consensus 237 ~~~~~~~~~~~l~s~-~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~--~~~ 303 (514)
..+.|+++|++|+.- . -+...+|.++..+.....+ .+. ..++|.+++|+|++ +.|++ |..
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i-----~l~-~~~~I~~~~WsP~g-~~favi~g~~ 81 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI-----ELK-KEGPIHDVAWSPNG-NEFAVIYGSM 81 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee-----ecc-CCCceEEEEECcCC-CEEEEEEccC
Confidence 357899999888763 2 2346666665444333322 121 24569999999999 55543 446
Q ss_pred CCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe----CCeEEEEEccCCCCceeee
Q 010256 304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGPVATF 379 (514)
Q Consensus 304 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~~~i~iwd~~~~~~~~~~~ 379 (514)
++.|.+||++. +. +..+. ...+..+.|+|+|++|+.++ .|.|.+||++. .+.+...
T Consensus 82 ~~~v~lyd~~~-~~----i~~~~--------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~~ 141 (194)
T PF08662_consen 82 PAKVTLYDVKG-KK----IFSFG--------------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKISTF 141 (194)
T ss_pred CcccEEEcCcc-cE----eEeec--------------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeecc
Confidence 78999999963 22 22222 24678899999999999864 27899999985 6666554
Q ss_pred eeccccccccccccccCCccceeeEEEcCCCCEEEEEeC------CCcEEEEecC
Q 010256 380 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY------SNLFRVFGCS 428 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~ 428 (514)
.... +..++|+|||++|++++. |+.++||+..
T Consensus 142 ~~~~-----------------~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 142 EHSD-----------------ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ccCc-----------------EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 3222 238999999999998764 7889999986
No 226
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=3.9e-14 Score=124.20 Aligned_cols=265 Identities=11% Similarity=0.144 Sum_probs=182.8
Q ss_pred CCCCCcccccccccccchhhc-cccCccc-cccc------ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcc
Q 010256 3 NGGGSSEAAAQPLEWKFSQVF-GERTAGE-EVQE------VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74 (514)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~h------~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~ 74 (514)
+..|=-++.+.+..|++.|.- .+..+.. ...| .-.-..+.++.+|.+|+.|+..|.|..+|+.+++..
T Consensus 89 e~~G~le~e~~EkT~~v~Q~~Ia~~Vdi~sa~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~---- 164 (545)
T KOG1272|consen 89 ETAGYLEAEGLEKTYKVRQDDIAENVDIASATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH---- 164 (545)
T ss_pred ccCCcccccCCcceeeeEHhhhhhhccHHhHHhhccccccccCCeeeeecCCccEEEecCCccceeeeecccceee----
Confidence 344555566678889988841 1111100 0011 223457888999999999999999999999888753
Q ss_pred cccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeec
Q 010256 75 RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (514)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~ 154 (514)
.++.- .+.|.++.|..++ ++ ++....+.+.|||-..-++.++...
T Consensus 165 -------------------~Ei~v-------------~Etv~Dv~~LHne--q~-~AVAQK~y~yvYD~~GtElHClk~~ 209 (545)
T KOG1272|consen 165 -------------------FEINV-------------METVRDVTFLHNE--QF-FAVAQKKYVYVYDNNGTELHCLKRH 209 (545)
T ss_pred -------------------eeeeh-------------hhhhhhhhhhcch--HH-HHhhhhceEEEecCCCcEEeehhhc
Confidence 22221 2679999996433 34 4555668999999877776655443
Q ss_pred cCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCcc
Q 010256 155 NVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY 234 (514)
Q Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~ 234 (514)
. .+. .+.|.|.--.| ++++..|-++--| +..... ...+ ....+
T Consensus 210 ~----------~v~-------rLeFLPyHfLL------------~~~~~~G~L~Y~D-VS~Gkl------Va~~-~t~~G 252 (545)
T KOG1272|consen 210 I----------RVA-------RLEFLPYHFLL------------VAASEAGFLKYQD-VSTGKL------VASI-RTGAG 252 (545)
T ss_pred C----------chh-------hhcccchhhee------------eecccCCceEEEe-echhhh------hHHH-HccCC
Confidence 2 222 56777777777 8888888888766 222221 1111 33456
Q ss_pred CeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 235 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
.+..++-+|-+..+-.| ..|+|.+|.....+.+. .+..|.++|.+|++.++| +++++.+.|..++|||++
T Consensus 253 ~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv--------KiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 253 RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV--------KILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLR 323 (545)
T ss_pred ccchhhcCCccceEEEcCCCceEEecCCCCcchHH--------HHHhcCCCcceEEECCCC-cEEeecccccceeEeeec
Confidence 78888999999999999 99999999998766655 456799999999999999 999999999999999999
Q ss_pred CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEcc
Q 010256 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~ 370 (514)
..... .++..+ -+...+++|..| +||.+-...|.||.-.
T Consensus 324 ~~~ql----~t~~tp-------------~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 324 NFYQL----HTYRTP-------------HPASNLSLSQKG-LLALSYGDHVQIWKDA 362 (545)
T ss_pred ccccc----ceeecC-------------CCcccccccccc-ceeeecCCeeeeehhh
Confidence 86542 222221 356778888665 4444433578999643
No 227
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.57 E-value=6.6e-14 Score=125.03 Aligned_cols=189 Identities=13% Similarity=0.141 Sum_probs=131.5
Q ss_pred CCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccc-
Q 010256 242 NSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD- 319 (514)
Q Consensus 242 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~- 319 (514)
.|.+--++.| .-|.|.+.|... ....++++. ...-....++++.|-|.+...|+.+-.+|.+.+||....--..
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~-~~~sklfne---~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~ 257 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPIN-FEVSKLFNE---ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA 257 (636)
T ss_pred CCCCcceEEeeccCceEEecchh-hHHHHhhhh---cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence 3557778888 889999998874 222222111 1111347899999999887899999999999999874311000
Q ss_pred ---cc--------ccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeecccccc
Q 010256 320 ---TH--------SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRP 387 (514)
Q Consensus 320 ---~~--------~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (514)
.. +.+.+.+...++...+.--.+.|...+|+|||++||+- .||.++|||..+ .+++..++..-+
T Consensus 258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFG--- 333 (636)
T KOG2394|consen 258 PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFG--- 333 (636)
T ss_pred CcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHhhcc---
Confidence 00 00111111112222233334589999999999999995 569999999987 555554432222
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECC
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 451 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 451 (514)
...+++|||||+||++|++|-.|.||.+... +....-++|+++|..++|.|
T Consensus 334 ------------GLLCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 334 ------------GLLCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ------------ceEEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccceeeEeecc
Confidence 2349999999999999999999999999865 55577889999999999987
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=4.9e-13 Score=114.96 Aligned_cols=183 Identities=14% Similarity=0.154 Sum_probs=126.5
Q ss_pred eEEEEECCCCC-EEEEe-cC--CeEEEEeccCCCceeeeeccCCCccc-ccCCceEEEEEecC--CCcEEEEEecCCeEE
Q 010256 236 INSISNNSDGE-TFISA-DD--LRINLWNLEISNQSFNIVDVKPANME-DLTEVITSAEFHPT--HCNMLAYSSSKGSIR 308 (514)
Q Consensus 236 v~~~~~~~~~~-~l~s~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~ 308 (514)
+..+.-++... ++++| .. ..+++||++..++.+.-.+++...+. .-.-+++++.|-+. . +.|++++.-+.++
T Consensus 151 ~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR 229 (412)
T KOG3881|consen 151 LYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVR 229 (412)
T ss_pred eeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCC-ceEEEEecceeEE
Confidence 33444444433 44446 66 78999999876555443333322221 12345678889876 5 7999999999999
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceee-eeeccccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVAT-FQVHEHLR 386 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~-~~~~~~~~ 386 (514)
+||.+.+... +..|+-.+ .+|+++...|+|.++++|.. +.+..||++. ++.+.. +.+-.+.+
T Consensus 230 ~YDt~~qRRP---V~~fd~~E------------~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~-~kl~g~~~kg~tGsi 293 (412)
T KOG3881|consen 230 LYDTRHQRRP---VAQFDFLE------------NPISSTGLTPSGNFIYTGNTKGQLAKFDLRG-GKLLGCGLKGITGSI 293 (412)
T ss_pred EecCcccCcc---eeEecccc------------CcceeeeecCCCcEEEEecccchhheecccC-ceeeccccCCccCCc
Confidence 9999976643 44444333 68999999999999999987 9999999997 665544 65555443
Q ss_pred cccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCC
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 452 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (514)
. ++..+|.+++|++++-|..|||+|+++.+.+.+.+ -.+..+.+.+.++
T Consensus 294 r---------------sih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY--vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 294 R---------------SIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY--VKSRLTFILLRDD 342 (412)
T ss_pred c---------------eEEEcCCCceEEeeccceeEEEeecccchhhhhhh--hhccccEEEecCC
Confidence 2 88999999999999999999999999853322111 1234455666544
No 229
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=2.4e-12 Score=123.01 Aligned_cols=186 Identities=12% Similarity=0.076 Sum_probs=121.5
Q ss_pred cCccCeEEEEECCCCCEEEEe----cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCe
Q 010256 231 AHDYHINSISNNSDGETFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
.|...+...+|+|||+.|+.. .+..|.+||+.++... .+..+.+.+...+|+|+|..++++.+.++.
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~ 269 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGN 269 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE---------EeecCCCcccCcEECCCCCEEEEEEecCCC
Confidence 455678899999999988875 2568999999865432 123345567788999999444456666665
Q ss_pred --EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC----CeEEEEEccCCCCceeeee
Q 010256 307 --IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQ 380 (514)
Q Consensus 307 --i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~----~~i~iwd~~~~~~~~~~~~ 380 (514)
|.+||+.++... . +..+........|+|||+.|+..++ ..|+++|+.. .....+.
T Consensus 270 ~~Iy~~d~~~~~~~-----~------------Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g--~~~~~lt 330 (435)
T PRK05137 270 TDIYTMDLRSGTTT-----R------------LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG--SNPRRIS 330 (435)
T ss_pred ceEEEEECCCCceE-----E------------ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC--CCeEEee
Confidence 667788776531 1 1222234567899999999887543 3677778763 3344443
Q ss_pred eccccccccccccccCCccceeeEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCcee
Q 010256 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 457 (514)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 457 (514)
..... +....|+|||++|+..+.+ ..|.+||+..+... .+.. ...+....|+||++.|+
T Consensus 331 ~~~~~---------------~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~--~lt~-~~~~~~p~~spDG~~i~ 392 (435)
T PRK05137 331 FGGGR---------------YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER--ILTS-GFLVEGPTWAPNGRVIM 392 (435)
T ss_pred cCCCc---------------ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE--eccC-CCCCCCCeECCCCCEEE
Confidence 32211 1167899999999876543 36888898654322 2221 22466789999999887
Q ss_pred ecCCC
Q 010256 458 LGSLS 462 (514)
Q Consensus 458 s~s~d 462 (514)
..+.+
T Consensus 393 ~~~~~ 397 (435)
T PRK05137 393 FFRQT 397 (435)
T ss_pred EEEcc
Confidence 76543
No 230
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=7.1e-13 Score=126.38 Aligned_cols=215 Identities=16% Similarity=0.162 Sum_probs=132.1
Q ss_pred ccCccCeEEEEECCCCCEEEEe-c---CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC
Q 010256 230 HAHDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 305 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg 305 (514)
..+...+.+.+|+|||+.|+.. . ...|++||+.++... . +....+...+++|+|+|..++++.+.+|
T Consensus 200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~--------l~~~~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-L--------VASFRGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-E--------eccCCCCccCceECCCCCEEEEEEeCCC
Confidence 4556678899999999998876 2 347999999755432 1 1222334457899999944445556665
Q ss_pred --eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--Ce--EEEEEccCCCCceeee
Q 010256 306 --SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MT--LKLWDINMDSGPVATF 379 (514)
Q Consensus 306 --~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~--i~iwd~~~~~~~~~~~ 379 (514)
.|.+||+.++... . +..+.......+|+|||+.|+..++ +. |.++|+.. ++ ...+
T Consensus 271 ~~~Iy~~d~~~g~~~-----~------------lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~-g~-~~~l 331 (433)
T PRK04922 271 NPEIYVMDLGSRQLT-----R------------LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG-GS-AERL 331 (433)
T ss_pred CceEEEEECCCCCeE-----E------------CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-eEEe
Confidence 5899999876531 1 1112233567899999999887653 44 55556553 32 3333
Q ss_pred eeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCC---cEEEEecCCCceeeeeecCCCcceeEEEECCCCCce
Q 010256 380 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR 456 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 456 (514)
..+... ....+|+|||++|+..+.++ .|++||+.++... .+. +........|+|+++++
T Consensus 332 t~~g~~---------------~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--~Lt-~~~~~~~p~~spdG~~i 393 (433)
T PRK04922 332 TFQGNY---------------NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--TLT-PGSLDESPSFAPNGSMV 393 (433)
T ss_pred ecCCCC---------------ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE--ECC-CCCCCCCceECCCCCEE
Confidence 222111 11689999999998765433 6999999876433 332 22234567899999988
Q ss_pred eecCCC-Ce--EEEe--eCCCCCccccCCcccccccceEEEEEcC
Q 010256 457 PLGSLS-GV--VRRV--KGADNSALDANGNAFDFSMKLLHLAWHP 496 (514)
Q Consensus 457 ~s~s~d-~~--v~i~--~~~~~~~~~~~~~~~~~~~~v~~~~~sp 496 (514)
+..+.+ +. +.++ +|.... .+. .+.+.+..++|+|
T Consensus 394 ~~~s~~~g~~~L~~~~~~g~~~~--~l~----~~~g~~~~p~wsp 432 (433)
T PRK04922 394 LYATREGGRGVLAAVSTDGRVRQ--RLV----SADGEVREPAWSP 432 (433)
T ss_pred EEEEecCCceEEEEEECCCCceE--Ecc----cCCCCCCCCccCC
Confidence 777654 23 3332 222111 111 1345677788887
No 231
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.9e-13 Score=120.70 Aligned_cols=296 Identities=12% Similarity=0.102 Sum_probs=196.6
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|+.|.| ...|..|++++.|..|.+||...++.+.
T Consensus 143 GcVntV~F--N~~Gd~l~SgSDD~~vv~WdW~~~~~~l------------------------------------------ 178 (559)
T KOG1334|consen 143 GCVNTVHF--NQRGDVLASGSDDLQVVVWDWVSGSPKL------------------------------------------ 178 (559)
T ss_pred Cccceeee--cccCceeeccCccceEEeehhhccCccc------------------------------------------
Confidence 99999999 5677899999999999999998765221
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCCCceee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
.|..+|...|....|-|. ...++++ .||.+++=.+...+.+..
T Consensus 179 ----------------------------------~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~ 224 (559)
T KOG1334|consen 179 ----------------------------------SFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVEN 224 (559)
T ss_pred ----------------------------------ccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceec
Confidence 112456666666666653 4456665 899999887765444332
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
. ..+..|.+.|..++.-|+.+..|.+++.|+.+.-+|++.+....... ..+..... .-....++.
T Consensus 225 t-----~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~----cr~~~~~~------~v~L~~Ia~ 289 (559)
T KOG1334|consen 225 T-----KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV----CREADEKE------RVGLYTIAV 289 (559)
T ss_pred c-----eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee----eeccCCcc------ceeeeeEec
Confidence 2 25667999999999999998999999999999999999876432211 11110000 024678888
Q ss_pred ecCCC-EEEEE-eCCeEEEEEccCCCC-----ceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcE
Q 010256 350 ARNGR-HILSR-DYMTLKLWDINMDSG-----PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (514)
Q Consensus 350 s~~g~-~l~~~-~~~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (514)
.|... .+++| .+.-+++||.+.-.+ .+..+..|.-. .+....|++++|+.++.-|.++-.|-.|
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~---------~d~~v~ITgl~Ysh~~sElLaSYnDe~I 360 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLV---------EDDPVNITGLVYSHDGSELLASYNDEDI 360 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcccc---------ccCcccceeEEecCCccceeeeecccce
Confidence 88665 55554 568899999875211 11222111110 1222347799999877766666677789
Q ss_pred EEEecCCCc-----------e-eeeeecCCCcc--eeEEEE-CCCCCceeecCCCCeEEEeeCCCCCccccCCccccccc
Q 010256 423 RVFGCSEGS-----------A-ESTTLEASKNP--MRRQVQ-TPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSM 487 (514)
Q Consensus 423 ~iwd~~~~~-----------~-~~~~~~~~~~~--v~~~~~-~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~ 487 (514)
+++.-.-+. . ....+++|... |..+-| -|...|+++||..|.|-|++.. ..++.....+-..
T Consensus 361 YLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~---t~eii~~MegDr~ 437 (559)
T KOG1334|consen 361 YLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK---TGEIIRFMEGDRH 437 (559)
T ss_pred EEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecc---hhHHHHHhhcccc
Confidence 999643221 1 12347788654 556655 5889999999999999993221 1111111112234
Q ss_pred ceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 488 KLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 488 ~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
-|+||.=||--..||+.+ +..+.||.
T Consensus 438 VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 438 VVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred eEeccCCCCCCchhhccCCccceeeec
Confidence 889999999999999665 88899995
No 232
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=1.8e-10 Score=99.05 Aligned_cols=211 Identities=16% Similarity=0.144 Sum_probs=136.9
Q ss_pred EEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCC-----cccccCCceEEEEEecCCCcEEEEEec-CCeEE
Q 010256 237 NSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA-----NMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIR 308 (514)
Q Consensus 237 ~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg~i~ 308 (514)
..+++++++++++++ ..|.|.++-++........+..-.. .-+....-+....+.|++ +++++.+- --+|.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~ 170 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIF 170 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEE
Confidence 678999999999998 6899999999765544332211000 000011227889999999 77777664 45799
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeeccccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
+|++..+.+.......++. ...-+.|.|+|++++.+.-.. ++|.+|........+..++.+....
T Consensus 171 ~y~~~dg~L~~~~~~~v~~-------------G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP 237 (346)
T COG2706 171 LYDLDDGKLTPADPAEVKP-------------GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP 237 (346)
T ss_pred EEEcccCccccccccccCC-------------CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc
Confidence 9999987764322222211 145788999999999988654 9999999986434555555443322
Q ss_pred cccccccccCCccceeeEEEcCCCCEEEEEe-CCCcEEEEecCCCceee---eeecCCCcceeEEEECCCCCceeecCCC
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAES---TTLEASKNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~s~d 462 (514)
.... ... ..-.+.+++||++|.++. ....|-+|.+......+ .....+....+...+++++++|+.+..+
T Consensus 238 ~dF~---g~~---~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~ 311 (346)
T COG2706 238 EDFT---GTN---WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQK 311 (346)
T ss_pred cccC---CCC---ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccC
Confidence 2111 111 122788999999998765 33478888876542222 2223444456789999999999888765
Q ss_pred C-eEEE
Q 010256 463 G-VVRR 467 (514)
Q Consensus 463 ~-~v~i 467 (514)
+ .+.+
T Consensus 312 sd~i~v 317 (346)
T COG2706 312 SDNITV 317 (346)
T ss_pred CCcEEE
Confidence 4 4444
No 233
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2.3e-12 Score=116.29 Aligned_cols=290 Identities=12% Similarity=0.149 Sum_probs=174.8
Q ss_pred ccccccccceeEEEEeeCCCCcEEEE-eeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCC
Q 010256 106 LKSLEIEEKINKIRWCQSANSALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (514)
Q Consensus 106 ~~~~~~~~~v~~i~~~~~~~~~~l~s-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 184 (514)
+..+++...-+.|.. ++||+|+++ |...-.|++||+.+-.++....+.... |. -...+.|-.
T Consensus 45 iQdfe~p~ast~ik~--s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~--------V~-------feiLsDD~S 107 (703)
T KOG2321|consen 45 IQDFEMPTASTRIKV--SPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEV--------VD-------FEILSDDYS 107 (703)
T ss_pred HHhcCCccccceeEe--cCCCcEEEEecccCCceEEEEcccceeeeeecccccc--------ee-------EEEeccchh
Confidence 344555677888888 678888765 677889999999876654433333111 11 111112222
Q ss_pred ccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEecCCeEEEEeccC
Q 010256 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISADDLRINLWNLEI 263 (514)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~d~~i~iwd~~~ 263 (514)
.+ +.-..|.+|.+-. .-. ..+...-...-.+++++.- ..+++.|....|+-++++.
T Consensus 108 K~------------v~L~~DR~IefHa----k~G-------~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEq 164 (703)
T KOG2321|consen 108 KS------------VFLQNDRTIEFHA----KYG-------RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQ 164 (703)
T ss_pred hh------------eEeecCceeeehh----hcC-------eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccc
Confidence 11 1112222222111 000 0000000012245566543 4455555778898899986
Q ss_pred CCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccc
Q 010256 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (514)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (514)
+.-+. .+....+.++++..++-. .+|++|+.+|.|..||.+....+. .++...... ..........
T Consensus 165 GrfL~--------P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~----~l~~~~~v~-s~pg~~~~~s 230 (703)
T KOG2321|consen 165 GRFLN--------PFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVG----TLDAASSVN-SHPGGDAAPS 230 (703)
T ss_pred ccccc--------ccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhhe----eeecccccC-CCccccccCc
Confidence 54332 344456889999999988 799999999999999999877642 222221100 0000111235
Q ss_pred eeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC--CCEEEEEeCCC
Q 010256 344 ISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD--GGRVATGSYSN 420 (514)
Q Consensus 344 i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~dg 420 (514)
|+++.|+.+|-.+++|.. |.+.|||++. .+++.. ..|....+ |..+.|.+. ++.+++. +..
T Consensus 231 vTal~F~d~gL~~aVGts~G~v~iyDLRa-~~pl~~-kdh~~e~p-------------i~~l~~~~~~~q~~v~S~-Dk~ 294 (703)
T KOG2321|consen 231 VTALKFRDDGLHVAVGTSTGSVLIYDLRA-SKPLLV-KDHGYELP-------------IKKLDWQDTDQQNKVVSM-DKR 294 (703)
T ss_pred ceEEEecCCceeEEeeccCCcEEEEEccc-CCceee-cccCCccc-------------eeeecccccCCCceEEec-chH
Confidence 999999999999999966 9999999997 665543 33333221 347788665 4455554 346
Q ss_pred cEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 421 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.++|||-.+|+.. ..++ ....++.+++-|+..++.++-++..+..
T Consensus 295 ~~kiWd~~~Gk~~-asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 295 ILKIWDECTGKPM-ASIE-PTSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred HhhhcccccCCce-eecc-ccCCcCceeeecCCceEEEecCCCccee
Confidence 7899999988543 3333 3445899999999999998877765543
No 234
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=4e-12 Score=121.24 Aligned_cols=168 Identities=13% Similarity=0.134 Sum_probs=101.0
Q ss_pred EEEEECCCCCEEEEe--cCC--eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-cCCe--EEE
Q 010256 237 NSISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGS--IRL 309 (514)
Q Consensus 237 ~~~~~~~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~--i~~ 309 (514)
.+.+|+|||+.|+.. .++ .|++||+.+++. . .+..+.......+|+|+| +.|+..+ .+|. |.+
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~--------~lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-T--------RLTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYR 320 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-E--------ECccCCCCccceEECCCC-CEEEEEECCCCCceEEE
Confidence 356899999877643 333 699999985542 2 223344445678999999 6666555 4554 555
Q ss_pred EEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-C---CeEEEEEccCCCCceeeeeecccc
Q 010256 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHL 385 (514)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~---~~i~iwd~~~~~~~~~~~~~~~~~ 385 (514)
+|+.+++.. .+. .+......++|+|+|++|+..+ + ..|.+||+.. ++.. .+.... .
T Consensus 321 ~dl~~g~~~-----~lt------------~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~~~-~Lt~~~-~ 380 (433)
T PRK04922 321 VAASGGSAE-----RLT------------FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-GSVR-TLTPGS-L 380 (433)
T ss_pred EECCCCCeE-----Eee------------cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC-CCeE-ECCCCC-C
Confidence 666554421 110 0112344689999999998743 2 3689999875 4432 332111 1
Q ss_pred ccccccccccCCccceeeEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCCcceeEEEECC
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 451 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 451 (514)
. ....|+|||++|+..+.+ +.|+++++..+ ....+..+...+...+|+|
T Consensus 381 ~---------------~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~--~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 381 D---------------ESPSFAPNGSMVLYATREGGRGVLAAVSTDGR--VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred C---------------CCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEEcccCCCCCCCCccCC
Confidence 1 157899999988866643 45778887543 2344444445555566654
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=6.6e-12 Score=119.31 Aligned_cols=172 Identities=12% Similarity=0.163 Sum_probs=99.6
Q ss_pred eEEEEECCCCCEEEE-e-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEEc
Q 010256 236 INSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDM 312 (514)
Q Consensus 236 v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~~wd~ 312 (514)
+...+|+|||+.|+. . .++...+|.++....... .+..+........|+||| +.|+..+ .++...+|.+
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-------~lt~~~~~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLR-------RLTQSSGIDTEPFFSPDG-RSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCCCcE-------ECCCCCCCCcCeEEcCCC-CEEEEEecCCCCcEEEEE
Confidence 346789999988874 4 677766665542221111 233344455678899999 6666544 4566677765
Q ss_pred C--CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC----CeEEEEEccCCCCceeeeeeccccc
Q 010256 313 R--QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 313 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~----~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
. ++... ...+.. ......+|+|||++|+..+. ..|.+||+.. ++. ..+.... ..
T Consensus 314 ~~~~g~~~---~lt~~g--------------~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-g~~-~~lt~~~-~~ 373 (427)
T PRK02889 314 PASGGAAQ---RVTFTG--------------SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT-GQV-TALTDTT-RD 373 (427)
T ss_pred ECCCCceE---EEecCC--------------CCcCceEECCCCCEEEEEEccCCcEEEEEEECCC-CCe-EEccCCC-Cc
Confidence 4 33210 001111 22345789999999987532 3699999875 432 2332211 10
Q ss_pred cccccccccCCccceeeEEEcCCCCEEEEEeCCC---cEEEEecCCCceeeeeecCCCcceeEEEECCC
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 452 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (514)
....|+|||++|+.++.++ .+++.++. + .....+..+...+...+|+|-
T Consensus 374 ---------------~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g-~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 374 ---------------ESPSFAPNGRYILYATQQGGRSVLAAVSSD-G-RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ---------------cCceECCCCCEEEEEEecCCCEEEEEEECC-C-CceEEeecCCCCCCCCccCCC
Confidence 1689999999988776543 35555653 3 233445455555666666653
No 236
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=2.1e-10 Score=98.61 Aligned_cols=289 Identities=12% Similarity=0.175 Sum_probs=178.8
Q ss_pred ccccchhhccccCcccccccccceEEEEEcCCCCeEEEecC---CCeEEEEEecC--CcccCCcccccccccccccCCcc
Q 010256 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTD--TRDNGGQRRDLEMMDYSMSRHPE 89 (514)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 89 (514)
..|++...-|+......+.+...++-|+|+|++++|.++.. +|.|.-|.++. ++..
T Consensus 19 ~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt------------------- 79 (346)
T COG2706 19 YVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT------------------- 79 (346)
T ss_pred EEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE-------------------
Confidence 45777755566666677888999999999999999998865 46788888764 3321
Q ss_pred ceeee--eeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeC-CCeEEEEEcCc-cEEEEEeeccCCCccccCCc
Q 010256 90 FRYKT--EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNG 165 (514)
Q Consensus 90 ~~~~~--~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~ 165 (514)
++. ...+ .+-+.++. +++|++++++.. -|.|.++-++. |.+......-.+
T Consensus 80 --~ln~~~~~g--------------~~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h-------- 133 (346)
T COG2706 80 --FLNRQTLPG--------------SPPCYVSV--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKH-------- 133 (346)
T ss_pred --EeeccccCC--------------CCCeEEEE--CCCCCEEEEEEccCceEEEEEcccCCccccceeeeec--------
Confidence 111 1122 22367777 788889998854 47888888754 432222111100
Q ss_pred ceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC
Q 010256 166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG 245 (514)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 245 (514)
...... . ...+..+....+.|++
T Consensus 134 --------------------------------------------------~g~~p~--~-----rQ~~~h~H~a~~tP~~ 156 (346)
T COG2706 134 --------------------------------------------------TGSGPH--E-----RQESPHVHSANFTPDG 156 (346)
T ss_pred --------------------------------------------------CCCCCC--c-----cccCCccceeeeCCCC
Confidence 000000 0 1111336678899999
Q ss_pred CEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec-CCeEEEEEcCCCccccccc
Q 010256 246 ETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMRQSALCDTHS 322 (514)
Q Consensus 246 ~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~ 322 (514)
++|++. .--.|.+|++..++.... .+..+ ......+.|.|+|++ ++.+..++ +++|.+|...........+
T Consensus 157 ~~l~v~DLG~Dri~~y~~~dg~L~~~----~~~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 157 RYLVVPDLGTDRIFLYDLDDGKLTPA----DPAEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred CEEEEeecCCceEEEEEcccCccccc----ccccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 999987 466799999985543221 11122 345667999999999 66665555 9999999998742111111
Q ss_pred cceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeeccccccccccccccCCccc
Q 010256 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 400 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
+....-. .-+.+ .....+|.++|||++|+++.. ..|.+|.+...+..+..+........ ..+
T Consensus 231 Q~i~tlP-----~dF~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~---------~PR- 294 (346)
T COG2706 231 QTIDTLP-----EDFTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQ---------FPR- 294 (346)
T ss_pred eeeccCc-----cccCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCc---------CCc-
Confidence 1111100 00111 246788999999999999754 68999998864444433332211100 001
Q ss_pred eeeEEEcCCCCEEEEEeCC-CcEEEEecCC
Q 010256 401 KFECCLSGDGGRVATGSYS-NLFRVFGCSE 429 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~~d-g~i~iwd~~~ 429 (514)
...|++.|++|+++..+ ..|.+|....
T Consensus 295 --~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 295 --DFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred --cceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 68899999999887754 5688887754
No 237
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.52 E-value=1.4e-11 Score=113.13 Aligned_cols=325 Identities=11% Similarity=0.063 Sum_probs=178.9
Q ss_pred cEEE-EeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCC
Q 010256 127 ALYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (514)
Q Consensus 127 ~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (514)
++++ +-..++.|.+.|..+.+........... ...+.++|||+.+ ++.+.|+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~---------------h~~~~~s~Dgr~~------------yv~~rdg 58 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAP---------------HAGLKFSPDGRYL------------YVANRDG 58 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTE---------------EEEEE-TT-SSEE------------EEEETTS
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCc---------------eeEEEecCCCCEE------------EEEcCCC
Confidence 3554 4467899999999998877666543211 0156789999988 7778899
Q ss_pred cEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCC
Q 010256 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 283 (514)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 283 (514)
.|.++| +...+.. ... .-.....++++++||++++++ ..+.+.++|.++.+....+ ............
T Consensus 59 ~vsviD-~~~~~~v------~~i--~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I-~~~~~~~~~~~~ 128 (369)
T PF02239_consen 59 TVSVID-LATGKVV------ATI--KVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTI-PTGGMPVDGPES 128 (369)
T ss_dssp EEEEEE-TTSSSEE------EEE--E-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEE-E--EE-TTTS--
T ss_pred eEEEEE-CCcccEE------EEE--ecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeec-ccccccccccCC
Confidence 999999 5444321 111 112345789999999999987 6999999999876655433 111111111345
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--C
Q 010256 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y 361 (514)
Q Consensus 284 ~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~ 361 (514)
.+.++..+|..+.++++--..+.|.+.|....+... ...++.. .......|+|++++++++. .
T Consensus 129 Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~--~~~i~~g-------------~~~~D~~~dpdgry~~va~~~s 193 (369)
T PF02239_consen 129 RVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK--VTTIKVG-------------RFPHDGGFDPDGRYFLVAANGS 193 (369)
T ss_dssp -EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE--EEEEE---------------TTEEEEEE-TTSSEEEEEEGGG
T ss_pred CceeEEecCCCCEEEEEEccCCeEEEEEeccccccc--eeeeccc-------------ccccccccCcccceeeeccccc
Confidence 778888888883344444455888888876643210 1122211 3567789999999988753 3
Q ss_pred CeEEEEEccCCCCceeeeeecccc-ccccccccccCCccceeeEEE--cCCCCEEEEEeCCCcEEEEecCCCceeeeeec
Q 010256 362 MTLKLWDINMDSGPVATFQVHEHL-RPKLCDLYENDSIFDKFECCL--SGDGGRVATGSYSNLFRVFGCSEGSAESTTLE 438 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 438 (514)
..|-++|.++ ++.+..+...... ......+.+-.. ...| ...+...++.-....+.+||.... +...+++
T Consensus 194 n~i~viD~~~-~k~v~~i~~g~~p~~~~~~~~php~~-----g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w-kvv~~I~ 266 (369)
T PF02239_consen 194 NKIAVIDTKT-GKLVALIDTGKKPHPGPGANFPHPGF-----GPVWATSGLGYFAIPLIGTDPVSVHDDYAW-KVVKTIP 266 (369)
T ss_dssp TEEEEEETTT-TEEEEEEE-SSSBEETTEEEEEETTT-----EEEEEEEBSSSSEEEEEE--TTT-STTTBT-SEEEEEE
T ss_pred ceeEEEeecc-ceEEEEeeccccccccccccccCCCc-----ceEEeeccccceecccccCCccccchhhcC-eEEEEEE
Confidence 7999999886 6555544321111 001111111110 1223 223333333333346667888765 3446666
Q ss_pred CCCcceeEEEECCCCCceeec----CCCCeEEEeeCCCCCccccCCcc-cccccceEEEEEcCCCCEEEEEe--cC-cEE
Q 010256 439 ASKNPMRRQVQTPSRPSRPLG----SLSGVVRRVKGADNSALDANGNA-FDFSMKLLHLAWHPSENSIACAA--SN-SLY 510 (514)
Q Consensus 439 ~~~~~v~~~~~~~~~~~l~s~----s~d~~v~i~~~~~~~~~~~~~~~-~~~~~~v~~~~~spd~~~l~~~~--~~-~~~ 510 (514)
....+ --+..+|+++++... .....|.+++...+.. .... ......+.++.|++||+.+.++. .+ .+.
T Consensus 267 ~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~---~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~ 342 (369)
T PF02239_consen 267 TQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV---VKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIV 342 (369)
T ss_dssp -SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE---EE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEE
T ss_pred CCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcce---eEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEE
Confidence 66556 567779999999887 5557888866554421 1111 01223499999999999877654 44 688
Q ss_pred EEeC
Q 010256 511 MYYA 514 (514)
Q Consensus 511 i~~~ 514 (514)
+|.+
T Consensus 343 v~D~ 346 (369)
T PF02239_consen 343 VYDA 346 (369)
T ss_dssp EEET
T ss_pred EEEC
Confidence 8764
No 238
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.8e-11 Score=117.05 Aligned_cols=169 Identities=10% Similarity=0.063 Sum_probs=100.1
Q ss_pred CeEEEEECCCCCEEEEe--cCC--eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec-CC--eE
Q 010256 235 HINSISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SI 307 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg--~i 307 (514)
.+...+|+|||+.|+.. .++ .|.+||++++.. . .+..+........|+||| +.|+..+. +| .|
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~--------~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~I 316 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-T--------RLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQL 316 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-E--------EccCCCCccCceeEcCCC-CEEEEEECCCCCCeE
Confidence 34567899999877643 444 477778875432 2 233345556778999999 66666553 33 57
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-C---CeEEEEEccCCCCceeeeeecc
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHE 383 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~---~~i~iwd~~~~~~~~~~~~~~~ 383 (514)
.++|+.++... .+ ..+...+....|+|+|+.|+... + ..|.+||+.. .....+...
T Consensus 317 y~~d~~g~~~~-----~l------------t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~--~~~~~lt~~- 376 (435)
T PRK05137 317 YVMNADGSNPR-----RI------------SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG--SGERILTSG- 376 (435)
T ss_pred EEEECCCCCeE-----Ee------------ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC--CceEeccCC-
Confidence 77787665421 11 11123456688999999998743 2 3677888753 223333211
Q ss_pred ccccccccccccCCccceeeEEEcCCCCEEEEEeCC------CcEEEEecCCCceeeeeecCCCcceeEEEECC
Q 010256 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 451 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 451 (514)
.. +....|+|||++|+..+.+ ..++++|+..+.. ..+.. ...+...+|+|
T Consensus 377 ~~---------------~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~--~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 377 FL---------------VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE--REVPT-PGDASDPAWSP 432 (435)
T ss_pred CC---------------CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce--EEccC-CCCccCcccCC
Confidence 11 1268999999998765432 2578888865433 23322 22344555554
No 239
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.50 E-value=1e-09 Score=101.28 Aligned_cols=274 Identities=12% Similarity=0.164 Sum_probs=159.5
Q ss_pred cccceEEEEEcCCCCeEEEecC----CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDR----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
-....+.++++|++++|.+... +|.|..|++..... ....+.......
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-------------------~L~~~~~~~~~g--------- 86 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-------------------TLTLLNSVPSGG--------- 86 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-------------------EEEEEEEEEESS---------
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-------------------eeEEeeeeccCC---------
Confidence 4456677999999999998876 57899999876410 001222222111
Q ss_pred ccccceeEEEEeeCCCCcEEEEee-CCCeEEEEEcCc-cEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~-~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
..-..++. ++++++|+++. .+|.|.++++.. +.+........... ..|+
T Consensus 87 ---~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g-------------------~g~~----- 137 (345)
T PF10282_consen 87 ---SSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEG-------------------SGPN----- 137 (345)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEE-------------------EESS-----
T ss_pred ---CCcEEEEE--ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCC-------------------CCCc-----
Confidence 33566777 67788888885 589999999986 44433322110000 0000
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCC
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISN 265 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~ 265 (514)
. .........++.++|+++++++. ....|.+|+++...
T Consensus 138 ------------------------------------~----~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 138 ------------------------------------P----DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT 177 (345)
T ss_dssp ------------------------------------T----TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS
T ss_pred ------------------------------------c----cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence 0 01112456789999999988886 56789999998654
Q ss_pred ceeee-eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC--CCccccccccceeccCCCCccceeecccc
Q 010256 266 QSFNI-VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR--QSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 266 ~~~~~-~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
..+.. ..+ .+ ......+.++|+|++..++++.-.++.|.++++. ++... ........... +.+ ..
T Consensus 178 ~~l~~~~~~---~~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~--~~~~~~~~~~~-----~~~-~~ 245 (345)
T PF10282_consen 178 GKLTPVDSI---KV-PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT--EIQTISTLPEG-----FTG-EN 245 (345)
T ss_dssp -TEEEEEEE---EC-STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE--EEEEEESCETT-----SCS-SS
T ss_pred ceEEEeecc---cc-ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee--EEEEeeecccc-----ccc-cC
Confidence 22211 000 11 2356689999999994444555568899999998 33221 11111110000 000 12
Q ss_pred ceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe-CC
Q 010256 343 SISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YS 419 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d 419 (514)
....++++|||++|+++.. ..|.+|+++.....+..+..-.... .. -..++++|+|++|+++. .+
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G---------~~---Pr~~~~s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGG---------KF---PRHFAFSPDGRYLYVANQDS 313 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESS---------SS---EEEEEE-TTSSEEEEEETTT
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCC---------CC---ccEEEEeCCCCEEEEEecCC
Confidence 5788999999999998643 8999999953223333222111000 00 01799999999998776 66
Q ss_pred CcEEEEecC
Q 010256 420 NLFRVFGCS 428 (514)
Q Consensus 420 g~i~iwd~~ 428 (514)
+.|.+|++.
T Consensus 314 ~~v~vf~~d 322 (345)
T PF10282_consen 314 NTVSVFDID 322 (345)
T ss_dssp TEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 789999774
No 240
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.49 E-value=2e-12 Score=115.79 Aligned_cols=237 Identities=16% Similarity=0.155 Sum_probs=145.7
Q ss_pred eEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEE-----ecCCCcEEEEEecCCeEEEE
Q 010256 236 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF-----HPTHCNMLAYSSSKGSIRLI 310 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~-----~p~~~~~l~~~~~dg~i~~w 310 (514)
+....++-.|.+|+-.-...+++|+.+.......-++. ..+.+ ....+=+| .|.+ .-++.|-.-|.+.+.
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k--~~y~g--t~P~cHdfn~~~a~~~g-~dllIGf~tGqvq~i 200 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDK--REYKG--TSPTCHDFNSFTATPKG-LDLLIGFTTGQVQLI 200 (636)
T ss_pred eeeccccCCCCEEEEecCCeEEEEEccCcchhccchhh--hcccC--CCCceecccccccCCCC-cceEEeeccCceEEe
Confidence 34444555677887776677888988732222111110 01111 11122222 3555 456668888899998
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC--CEEEEEeCCeEEEEEccCC-------------CCc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--RHILSRDYMTLKLWDINMD-------------SGP 375 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~~~~~i~iwd~~~~-------------~~~ 375 (514)
|....+. .+.|..... -.+..++++.|-|.+ .++++-.+|.+++||.... +..
T Consensus 201 dp~~~~~----sklfne~r~--------i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~ 268 (636)
T KOG2394|consen 201 DPINFEV----SKLFNEERL--------INKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQ 268 (636)
T ss_pred cchhhHH----HHhhhhccc--------ccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCe
Confidence 8876322 222222211 012579999999854 4444445689999986431 001
Q ss_pred eeee--eeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCC
Q 010256 376 VATF--QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR 453 (514)
Q Consensus 376 ~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (514)
.... +.+....+..+.....+ .|...+|+|||++||+.+.||.+||||..+. .+....+.......+++|+|||
T Consensus 269 f~i~t~ksk~~rNPv~~w~~~~g---~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGGLLCvcWSPDG 344 (636)
T KOG2394|consen 269 FAILTSKSKKTRNPVARWHIGEG---SINEFAFSPDGKYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGGLLCVCWSPDG 344 (636)
T ss_pred eEEeeeeccccCCccceeEeccc---cccceeEcCCCceEEEEecCceEEEeeccHH-HHHHHHHhhccceEEEEEcCCc
Confidence 1111 11111111112222223 3448999999999999999999999999875 4456677777888999999999
Q ss_pred CceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcC
Q 010256 454 PSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP 496 (514)
Q Consensus 454 ~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 496 (514)
+||++|++|--|.+ |......+...-.+|.+.|..++|.|
T Consensus 345 KyIvtGGEDDLVtV---wSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 345 KYIVTGGEDDLVTV---WSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cEEEecCCcceEEE---EEeccceEEEeccccccceeeEeecc
Confidence 99999999999999 33332233344557899999999985
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.48 E-value=5.4e-12 Score=105.09 Aligned_cols=98 Identities=13% Similarity=0.227 Sum_probs=70.5
Q ss_pred cceeEEEEecCCCEEEE--Ee-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC
Q 010256 342 ASISDIKFARNGRHILS--RD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~--~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (514)
++|.+++|+|+|+.+++ |. +..|.+||++ .+.+..+.... +..+.|+|+|++|++++.
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~--~~~i~~~~~~~-----------------~n~i~wsP~G~~l~~~g~ 120 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK--GKKIFSFGTQP-----------------RNTISWSPDGRFLVLAGF 120 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCc--ccEeEeecCCC-----------------ceEEEECCCCCEEEEEEc
Confidence 57999999999998765 33 3799999997 56666554221 127999999999998874
Q ss_pred C---CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCC
Q 010256 419 S---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 419 d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
+ |.|.+||+.+.+.. .+.+ ...+..+.|+|+|+++++++.
T Consensus 121 ~n~~G~l~~wd~~~~~~i-~~~~--~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 121 GNLNGDLEFWDVRKKKKI-STFE--HSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCCCcEEEEEECCCCEEe-eccc--cCcEEEEEEcCCCCEEEEEEe
Confidence 3 67999999965332 2222 223567788888888877754
No 242
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.47 E-value=4.1e-12 Score=107.53 Aligned_cols=225 Identities=16% Similarity=0.174 Sum_probs=133.8
Q ss_pred cCeEEEEECCCCC---EEEEecCCeEEEEeccCCCcee-----------------ee---------eccCCCc--ccccC
Q 010256 234 YHINSISNNSDGE---TFISADDLRINLWNLEISNQSF-----------------NI---------VDVKPAN--MEDLT 282 (514)
Q Consensus 234 ~~v~~~~~~~~~~---~l~s~~d~~i~iwd~~~~~~~~-----------------~~---------~~~~~~~--~~~~~ 282 (514)
..|+.+.|.++++ +|+++.|.+|++|.+....... ++ +...|.. -..|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 4566777776643 3444588888888776432211 00 0011111 13567
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC-C-EEEEEe
Q 010256 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-R-HILSRD 360 (514)
Q Consensus 283 ~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~-~l~~~~ 360 (514)
.-|.++.++.|+ ..+++ +.|=+|.+|++.-.... ....+... .-+...+.-|++..|+|.. . ++++.+
T Consensus 165 yhiNSIS~NsD~-Et~lS-ADdLRINLWnlei~d~s---FnIVDIKP-----~nmEeLteVITsaEFhp~~cn~f~YSSS 234 (433)
T KOG1354|consen 165 YHINSISVNSDK-ETFLS-ADDLRINLWNLEIIDQS---FNIVDIKP-----ANMEELTEVITSAEFHPHHCNVFVYSSS 234 (433)
T ss_pred eEeeeeeecCcc-ceEee-ccceeeeeccccccCCc---eeEEEccc-----cCHHHHHHHHhhhccCHhHccEEEEecC
Confidence 778999999998 56664 46789999998753322 11111110 0022233568999999943 3 333455
Q ss_pred CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC
Q 010256 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 440 (514)
Q Consensus 361 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 440 (514)
.|+|++-|++...-+...-+..+........-+-.+.|..|..+.|+++|+||++-+. -+|++||+........+.+.|
T Consensus 235 KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 235 KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence 6999999998422111111111111111111122234446668999999999997654 689999996554555555544
Q ss_pred Cc------------c---eeEEEECCCCCceeecCCCCeEEEee
Q 010256 441 KN------------P---MRRQVQTPSRPSRPLGSLSGVVRRVK 469 (514)
Q Consensus 441 ~~------------~---v~~~~~~~~~~~l~s~s~d~~v~i~~ 469 (514)
.. . -..++|+.++.++++||-...+++..
T Consensus 314 ~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 314 EYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred HhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 32 1 24678899999999999999999944
No 243
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.46 E-value=5.7e-10 Score=102.98 Aligned_cols=291 Identities=12% Similarity=0.092 Sum_probs=164.6
Q ss_pred EEEeeCC----CeEEEEEc--CccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCC
Q 010256 129 YLLSTND----KTIKLWKV--QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG 202 (514)
Q Consensus 129 l~s~~~d----~~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 202 (514)
+++|+.. +.|.+|++ .++++........ ...++-++++|+++.| .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~--------------~~~Ps~l~~~~~~~~L------------Y~~~ 55 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAE--------------GENPSWLAVSPDGRRL------------YVVN 55 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEE--------------SSSECCEEE-TTSSEE------------EEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecC--------------CCCCceEEEEeCCCEE------------EEEE
Confidence 3445444 78888887 5666554433211 1223377889999887 4333
Q ss_pred ----CCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeecc---
Q 010256 203 ----GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDV--- 273 (514)
Q Consensus 203 ----~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~--- 273 (514)
..+.|..|+ +........ ..... .........++++|++++|+++ .+|.|.++++............
T Consensus 56 e~~~~~g~v~~~~-i~~~~g~L~--~~~~~-~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~ 131 (345)
T PF10282_consen 56 EGSGDSGGVSSYR-IDPDTGTLT--LLNSV-PSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRH 131 (345)
T ss_dssp TTSSTTTEEEEEE-EETTTTEEE--EEEEE-EESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEES
T ss_pred ccccCCCCEEEEE-ECCCcceeE--Eeeee-ccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeeccc
Confidence 457888777 322211111 11111 1122345679999999999998 6999999999865443332110
Q ss_pred ---CCCcccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 274 ---KPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 274 ---~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.|...........++.++|++ +++++.. ....|.+|++............+..+ .....+.+.|
T Consensus 132 ~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~-----------~G~GPRh~~f 199 (345)
T PF10282_consen 132 EGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP-----------PGSGPRHLAF 199 (345)
T ss_dssp EEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECS-----------TTSSEEEEEE
T ss_pred CCCCCcccccccccceeEEECCCC-CEEEEEecCCCEEEEEEEeCCCceEEEeeccccc-----------cCCCCcEEEE
Confidence 011111234567899999999 5555544 35689999997754211101111111 1246788999
Q ss_pred ecCCCEEEEEeC--CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe-CCCcEEEEe
Q 010256 350 ARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFG 426 (514)
Q Consensus 350 s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd 426 (514)
+|++++++.... ++|.++++......+.....-..... . +... .....++++|||++|.++. .++.|.+|+
T Consensus 200 ~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~---~-~~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 200 SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE---G-FTGE--NAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET---T-SCSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc---c-cccc--CCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 999999988643 89999999832222222211111000 0 0000 0123799999999987655 667899999
Q ss_pred cCCC-ceee--eeecCCCcceeEEEECCCCCceeecC-CCCeEEE
Q 010256 427 CSEG-SAES--TTLEASKNPMRRQVQTPSRPSRPLGS-LSGVVRR 467 (514)
Q Consensus 427 ~~~~-~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~s-~d~~v~i 467 (514)
+... ..+. ..+.......+.+.++|++++|+++. .++.|.+
T Consensus 274 ~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 274 LDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp ECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred EecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEE
Confidence 9422 2221 33333344578999999999988775 4445555
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.46 E-value=1.3e-11 Score=118.34 Aligned_cols=185 Identities=15% Similarity=0.137 Sum_probs=118.2
Q ss_pred ccCeEEEEECCCCCEEEEe-c---CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC--e
Q 010256 233 DYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--S 306 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg--~ 306 (514)
...+...+|+|+|+.|+.+ . ...|++||+.+++... +..+...+.+++|+|++..++++.+.++ .
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 259 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---------VASFPGMNGAPAFSPDGSKLAVSLSKDGNPD 259 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---------eecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 3456778899999999876 3 2579999998654321 1223445667899999943444555554 5
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--C--eEEEEEccCCCCceeeeeec
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVATFQVH 382 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~--~i~iwd~~~~~~~~~~~~~~ 382 (514)
|.+||+.++... .+ ..+........|+|||+.|+..++ + .|.++|+.. ++ ...+..+
T Consensus 260 i~~~d~~~~~~~-----~l------------~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~~-~~~l~~~ 320 (417)
T TIGR02800 260 IYVMDLDGKQLT-----RL------------TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-GE-VRRLTFR 320 (417)
T ss_pred EEEEECCCCCEE-----EC------------CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEeecC
Confidence 888888776431 11 111123456789999998876543 3 577777764 33 3333322
Q ss_pred cccccccccccccCCccceeeEEEcCCCCEEEEEeCCC---cEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeec
Q 010256 383 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
... .....|+|+|++|+.++.++ .|.+||+.++... .+... .......|+|++++|+..
T Consensus 321 ~~~---------------~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~--~l~~~-~~~~~p~~spdg~~l~~~ 382 (417)
T TIGR02800 321 GGY---------------NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER--VLTDT-GLDESPSFAPNGRMILYA 382 (417)
T ss_pred CCC---------------ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE--EccCC-CCCCCceECCCCCEEEEE
Confidence 211 12688999999999887765 7899998875332 22222 223456899999988887
Q ss_pred CCCC
Q 010256 460 SLSG 463 (514)
Q Consensus 460 s~d~ 463 (514)
+.++
T Consensus 383 ~~~~ 386 (417)
T TIGR02800 383 TTRG 386 (417)
T ss_pred EeCC
Confidence 7654
No 245
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.45 E-value=2.2e-10 Score=102.34 Aligned_cols=342 Identities=10% Similarity=0.101 Sum_probs=200.3
Q ss_pred cccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
..-++..++|||.|.+|++....| |.+|.-..... +.+... .
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~---l~~~~~----------------------------------~ 72 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAK---LVRFRH----------------------------------P 72 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhh---eeeeec----------------------------------C
Confidence 345789999999999999987665 99998654331 111111 2
Q ss_pred ceeEEEEeeCCCCcEEEEee---------------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCcee
Q 010256 114 KINKIRWCQSANSALYLLST---------------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~---------------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (514)
.|..+.| ++++.+|.+=+ .++.+.+||..++.+...+.....+ ...+..+.
T Consensus 73 ~V~~~~f--SP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~------------~~~Wp~~k 138 (561)
T COG5354 73 DVKYLDF--SPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP------------YLGWPVLK 138 (561)
T ss_pred Cceeccc--CcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc------------ccccceee
Confidence 2444445 33344444432 2346999999999877665544222 11222567
Q ss_pred eccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC--CEEEE-----e
Q 010256 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFIS-----A 251 (514)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s-----~ 251 (514)
|+.+.++. +.. ....+.++++ . ..... .+.. .-....|...+|+|.+ ..|+. .
T Consensus 139 ~s~~D~y~------------ARv-v~~sl~i~e~-t-~n~~~--~p~~---~lr~~gi~dFsisP~~n~~~la~~tPEk~ 198 (561)
T COG5354 139 FSIDDKYV------------ARV-VGSSLYIHEI-T-DNIEE--HPFK---NLRPVGILDFSISPEGNHDELAYWTPEKL 198 (561)
T ss_pred eeecchhh------------hhh-ccCeEEEEec-C-Ccccc--Cchh---hccccceeeEEecCCCCCceEEEEccccC
Confidence 88888775 322 4556777773 1 11111 1111 1123568888999863 34443 2
Q ss_pred -cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec-----------CCeEEEEEcCCCcccc
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-----------KGSIRLIDMRQSALCD 319 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-----------dg~i~~wd~~~~~~~~ 319 (514)
..+++++|.+...... ... ++. ...=..+.|.+.| .+++.-.. ...+.|++++....
T Consensus 199 ~kpa~~~i~sIp~~s~l-~tk-----~lf--k~~~~qLkW~~~g-~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-- 267 (561)
T COG5354 199 NKPAMVRILSIPKNSVL-VTK-----NLF--KVSGVQLKWQVLG-KYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-- 267 (561)
T ss_pred CCCcEEEEEEccCCCee-eee-----eeE--eecccEEEEecCC-ceEEEEEEEeeecccceeccceEEEEeeccccc--
Confidence 5889999998744322 211 221 1222467788887 44432111 23466666653332
Q ss_pred ccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe---CCeEEEEEccCCCCceeeeeeccccccccccccccC
Q 010256 320 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND 396 (514)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (514)
+.. ....++|...+|.|.++.+++.+ ...+.++|++. .....+... ..+
T Consensus 268 ---~V~------------~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~--Nl~~~~Pe~--~rN--------- 319 (561)
T COG5354 268 ---PVE------------KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG--NLRFYFPEQ--KRN--------- 319 (561)
T ss_pred ---cee------------ccccccceeeeecccCCceeEEecccccceeeccccc--ceEEecCCc--ccc---------
Confidence 111 12237899999999988877643 27889999984 433333322 222
Q ss_pred CccceeeEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCC------CCeEEE
Q 010256 397 SIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL------SGVVRR 467 (514)
Q Consensus 397 ~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~------d~~v~i 467 (514)
.+.|+|.+++++.++-| |.+-+||..........+.+.. .+-+.|+||++++.+.-. |..++|
T Consensus 320 ------T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l 391 (561)
T COG5354 320 ------TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKL 391 (561)
T ss_pred ------cccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEE
Confidence 68899999999987765 6899999886533322444332 234679999999877643 333444
Q ss_pred eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 468 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
+... +. .-...+.+.|.|.+++..+.+
T Consensus 392 ---~~v~-----g~---~~fel~~~~W~p~~~~~ttsS 418 (561)
T COG5354 392 ---WDVY-----GA---KVFELTNITWDPSGQYVTTSS 418 (561)
T ss_pred ---EEec-----Cc---hhhhhhhccccCCcccceeec
Confidence 1111 00 012567888988888766554
No 246
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=4.3e-11 Score=111.09 Aligned_cols=304 Identities=11% Similarity=0.159 Sum_probs=197.0
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.++......|++|+....|+|+|+.||.+++-.+.+.......+. ++-......-.++.||+
T Consensus 10 ~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g--------laa~snLsmNQtLeGH~---------- 71 (1189)
T KOG2041|consen 10 GIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG--------LAAASNLSMNQTLEGHN---------- 71 (1189)
T ss_pred CCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc--------cccccccchhhhhccCc----------
Confidence 345667899999999999999999999999999876553211111 11111233445789998
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|..+.| +.+.+.|-++..+|.|.+|-+-.+...
T Consensus 72 --~sV~vvTW--Ne~~QKLTtSDt~GlIiVWmlykgsW~----------------------------------------- 106 (1189)
T KOG2041|consen 72 --ASVMVVTW--NENNQKLTTSDTSGLIIVWMLYKGSWC----------------------------------------- 106 (1189)
T ss_pred --ceEEEEEe--ccccccccccCCCceEEEEeeecccHH-----------------------------------------
Confidence 89999999 566678888899999999988766421
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
.+. .-...++-|.+++|+.||..++.. .||.|.+=.++ +.....
T Consensus 107 -------------------------EEM---------iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwg 151 (1189)
T KOG2041|consen 107 -------------------------EEM---------INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWG 151 (1189)
T ss_pred -------------------------HHH---------hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecc
Confidence 110 002334668899999999999999 99999888776 333221
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccc-ccceeccCCCCccceeeccccceeEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH-SKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
. .++ ......+.|++|. ..++.+-.+|.+.+||....-...-. ....... ..+......|..+.
T Consensus 152 K------eLk--g~~l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~t------g~~s~~~~kia~i~ 216 (1189)
T KOG2041|consen 152 K------ELK--GQLLAHVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGT------GIFSNFPTKIAEIE 216 (1189)
T ss_pred h------hcc--hheccceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeee------eeecCCCcccccee
Confidence 0 122 2234578899998 77777888999999997653211000 0000100 00111112244444
Q ss_pred Ee--------cCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC
Q 010256 349 FA--------RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (514)
Q Consensus 349 ~s--------~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 419 (514)
|. |+...|+.+-+ |++.|..-.++..++-.-.+ ..+....|+++|..||.++.|
T Consensus 217 w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg-----------------m~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 217 WNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG-----------------MKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred eccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc-----------------cEeecceecCCCcEEEEccCc
Confidence 43 46777777754 88887765543333322211 113478999999999988764
Q ss_pred ---------CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 420 ---------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 420 ---------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+.|.+|..- .....+++.....|+++.|-..|-.+|.+ .|+.+.+
T Consensus 280 ~da~~~~d~n~v~Fysp~--G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyf 333 (1189)
T KOG2041|consen 280 SDADEPTDSNKVHFYSPY--GHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYF 333 (1189)
T ss_pred ccccCccccceEEEeccc--hhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEE
Confidence 467777654 34557788888889999987766655554 4666665
No 247
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=8e-11 Score=106.15 Aligned_cols=314 Identities=11% Similarity=0.107 Sum_probs=183.0
Q ss_pred eEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeE
Q 010256 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (514)
Q Consensus 38 V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (514)
=+-+.|||-|.||+|--.-| |.+|--.+-.. ...| .| ..|.-
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r-----------------------~~RF-~H-------------p~Vq~ 254 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDR-----------------------IQRF-YH-------------PGVQF 254 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHH-----------------------HHhc-cC-------------CCcee
Confidence 35689999999999987776 88997432221 1111 12 44888
Q ss_pred EEEeeCCCCcEEEEee-----------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 118 IRWCQSANSALYLLST-----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 118 i~~~~~~~~~~l~s~~-----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
+.|+ |+.+||++=+ ....+.|||+.+|.....+..... ....+.-..||.|++.+
T Consensus 255 idfS--P~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~------------~~~~WP~frWS~DdKy~ 320 (698)
T KOG2314|consen 255 IDFS--PNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKS------------PYLKWPIFRWSHDDKYF 320 (698)
T ss_pred eecC--CccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCC------------CccccceEEeccCCcee
Confidence 8884 5556888743 226899999999987665544211 11233366899999986
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--c----CCeEEEEe
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D----DLRINLWN 260 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~----d~~i~iwd 260 (514)
+.-.. .+|.||+ ...... ...+ .-.-..|....|+|.+++||.= . -..+-+-.
T Consensus 321 ------------Arm~~-~sisIyE-tpsf~l-ld~K------slki~gIr~FswsP~~~llAYwtpe~~~~parvtL~e 379 (698)
T KOG2314|consen 321 ------------ARMTG-NSISIYE-TPSFML-LDKK------SLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLME 379 (698)
T ss_pred ------------EEecc-ceEEEEe-cCceee-eccc------ccCCccccCcccCCCcceEEEEcccccCCcceEEEEe
Confidence 33222 6777776 211111 0111 1123678889999999888852 1 22344444
Q ss_pred ccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEE----------ecCCeEEEEEcCCCccccccccceeccCC
Q 010256 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS----------SSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~----------~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
+.+.+... .. ++ +.-.=..+-|-.+| .+|+.- +.-..+.|+.++..... +...+..
T Consensus 380 vPs~~~iR-t~-----nl--fnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp---ve~velk-- 445 (698)
T KOG2314|consen 380 VPSKREIR-TK-----NL--FNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP---VEVVELK-- 445 (698)
T ss_pred cCccceee-ec-----cc--eeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCCC---ceeeecc--
Confidence 44332221 10 11 11111233454555 444421 11223555666554432 2223322
Q ss_pred CCccceeeccccceeEEEEecCCCEEEE--EeC--CeEEEEEccCCCC---ceeeeeeccccccccccccccCCccceee
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILS--RDY--MTLKLWDINMDSG---PVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~--~~~--~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
..|...+|-|.|..+++ |.. .++.+|.+.+... .+..+.... ...
T Consensus 446 -----------e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~-----------------~N~ 497 (698)
T KOG2314|consen 446 -----------ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKF-----------------ANT 497 (698)
T ss_pred -----------hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccc-----------------cce
Confidence 57899999999988776 443 7899998874122 122222111 127
Q ss_pred EEEcCCCCEEEEE---eCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 404 CCLSGDGGRVATG---SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 404 ~~~s~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+.|+|.|++++.+ |..|.+.++|+........-...| ...+.+.|.|.|+|+++++.-...++
T Consensus 498 vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~ 563 (698)
T KOG2314|consen 498 VFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKV 563 (698)
T ss_pred EEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhcc
Confidence 8999999998865 456889999987422221222223 33467899999999999987765555
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=3.5e-10 Score=108.39 Aligned_cols=148 Identities=12% Similarity=0.146 Sum_probs=89.4
Q ss_pred eEEEEECCCCCEEEEe--cC--CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec-CC--eEE
Q 010256 236 INSISNNSDGETFISA--DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIR 308 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg--~i~ 308 (514)
+.+++|+||++.|+.. .+ ..|++||+.++... .+..+........|+|++ +.|+..+. ++ .|.
T Consensus 236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~---------~l~~~~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy 305 (417)
T TIGR02800 236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT---------RLTNGPGIDTEPSWSPDG-KSIAFTSDRGGSPQIY 305 (417)
T ss_pred ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE---------ECCCCCCCCCCEEECCCC-CEEEEEECCCCCceEE
Confidence 3457899999877643 33 46888898754322 122233444567899999 66655544 33 577
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-C---eEEEEEccCCCCceeeeeeccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M---TLKLWDINMDSGPVATFQVHEH 384 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~---~i~iwd~~~~~~~~~~~~~~~~ 384 (514)
++|+.+++.. .+ ..+......+.|+|+|++++.... + .|.+||+.. +. ...+.....
T Consensus 306 ~~d~~~~~~~-----~l------------~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~-~~-~~~l~~~~~ 366 (417)
T TIGR02800 306 MMDADGGEVR-----RL------------TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG-GG-ERVLTDTGL 366 (417)
T ss_pred EEECCCCCEE-----Ee------------ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC-CC-eEEccCCCC
Confidence 7777655421 11 111235667899999999987543 2 788888875 32 222222111
Q ss_pred cccccccccccCCccceeeEEEcCCCCEEEEEeCCC---cEEEEecC
Q 010256 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCS 428 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~ 428 (514)
. ...+|+|||++|+..+.++ .+++.+..
T Consensus 367 ~----------------~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 367 D----------------ESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred C----------------CCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 1 1568999999888776554 35555544
No 249
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.39 E-value=2.3e-10 Score=96.15 Aligned_cols=232 Identities=14% Similarity=0.139 Sum_probs=148.2
Q ss_pred CeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEE-EEecC------CeE
Q 010256 235 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSK------GSI 307 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~-~~~~d------g~i 307 (514)
...+++|+.|...++.|.|.-.++|+.+--++... ..+....-.+..+-|-. ++++ .|+.+ ..+
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~------r~~~~~G~~~veMLfR~---N~laLVGGg~~pky~pNkv 77 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESAS------RQFIDGGFKIVEMLFRS---NYLALVGGGSRPKYPPNKV 77 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhh------hccccCchhhhhHhhhh---ceEEEecCCCCCCCCCceE
Confidence 34569999999999999666689999873222110 01111112222333322 3333 34433 479
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeecccccc
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRP 387 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (514)
.|||=..... +..+.- ..+|.++.++++ .|++.-.++|.||....+-+.+..+.....+..
T Consensus 78 iIWDD~k~~~----i~el~f-------------~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~~NPkG 138 (346)
T KOG2111|consen 78 IIWDDLKERC----IIELSF-------------NSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKG 138 (346)
T ss_pred EEEecccCcE----EEEEEe-------------ccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecccCCCc
Confidence 9999333322 222221 257999999865 677777789999999854666666654443321
Q ss_pred ccccccccCCccceeeEEEcC--CCCEEEEEe-CCCcEEEEecCCCce-eeeeecCCCcceeEEEECCCCCceeecCCCC
Q 010256 388 KLCDLYENDSIFDKFECCLSG--DGGRVATGS-YSNLFRVFGCSEGSA-ESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 463 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~ 463 (514)
-++..| +..+||.-+ .-|.|+|-|+..... ....+..|.+.|.+++.+.+|..+||+|..|
T Consensus 139 ---------------lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG 203 (346)
T KOG2111|consen 139 ---------------LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG 203 (346)
T ss_pred ---------------eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc
Confidence 233333 344566433 558999999986544 2378899999999999999999999999999
Q ss_pred eEEE----eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCc-EEEEe
Q 010256 464 VVRR----VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 513 (514)
Q Consensus 464 ~v~i----~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~-~~i~~ 513 (514)
++-. .+|..+. |+.. -.-...|.+++|||++.+||++++.+ +-||.
T Consensus 204 TLIRIFdt~~g~~l~--E~RR--G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 204 TLIRIFDTEDGTLLQ--ELRR--GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred EEEEEEEcCCCcEee--eeec--CCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 8654 3333333 1111 01257899999999999999999665 44543
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=4.6e-10 Score=107.07 Aligned_cols=167 Identities=14% Similarity=0.215 Sum_probs=95.0
Q ss_pred EEEECCCCCEEEEe--cCCe--EEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-cCC--eEEEE
Q 010256 238 SISNNSDGETFISA--DDLR--INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG--SIRLI 310 (514)
Q Consensus 238 ~~~~~~~~~~l~s~--~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg--~i~~w 310 (514)
..+|+|||+.|+.. .++. |+++|+++++. . .+..+........|+|++ +.|+..+ .++ .|.++
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~--------~lt~~~~~~~~p~wSpDG-~~I~f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-T--------RITRHRAIDTEPSWHPDG-KSLIFTSERGGKPQIYRV 335 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-E--------ECccCCCCccceEECCCC-CEEEEEECCCCCceEEEE
Confidence 46799999887754 4554 77778875432 2 223344456778999999 5555444 344 45566
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-C-C--eEEEEEccCCCCceeeeeeccccc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-M--TLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~--~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
|+.+++.. ..++.. ......+|+|||++|+..+ . + .|.++|+.. ++ ...+.... ..
T Consensus 336 dl~~g~~~---~Lt~~g--------------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~~-~d 395 (448)
T PRK04792 336 NLASGKVS---RLTFEG--------------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQVLTSTR-LD 395 (448)
T ss_pred ECCCCCEE---EEecCC--------------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-CC-eEEccCCC-CC
Confidence 76665431 001111 1234568999999988743 2 4 455566654 33 23332111 10
Q ss_pred cccccccccCCccceeeEEEcCCCCEEEEEeC-CC--cEEEEecCCCceeeeeecCCCcceeEEEECC
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN--LFRVFGCSEGSAESTTLEASKNPMRRQVQTP 451 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 451 (514)
....|+|||++|+..+. ++ .+++++.. +. ....+..+...+....|+|
T Consensus 396 ---------------~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~-~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 396 ---------------ESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GR-FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ---------------CCceECCCCCEEEEEEecCCceEEEEEECC-CC-ceEECcCCCCCcCCCccCC
Confidence 14689999998876553 33 36777764 32 2344544445555666665
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=9.6e-11 Score=111.70 Aligned_cols=215 Identities=12% Similarity=0.151 Sum_probs=124.6
Q ss_pred cCccCeEEEEECCCCCEEEEe--cCC--eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCe
Q 010256 231 AHDYHINSISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
.+...+.+..|+|||+.|+.. .++ .|.+||+.+++.. .+ ..........+|+|+|..++++.+.++.
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~l--------t~~~g~~~~~~wSPDG~~La~~~~~~g~ 285 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KV--------TSFPGINGAPRFSPDGKKLALVLSKDGQ 285 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-Ee--------cCCCCCcCCeeECCCCCEEEEEEeCCCC
Confidence 445678889999999998875 333 5888898755432 11 1112233468999999434445666665
Q ss_pred --EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--C--eEEEEEccCCCCceeeee
Q 010256 307 --IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVATFQ 380 (514)
Q Consensus 307 --i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~--~i~iwd~~~~~~~~~~~~ 380 (514)
|.++|+.+++.. . +..+.......+|+|||+.|+..++ + .|.++|+.. ++ ...+.
T Consensus 286 ~~Iy~~dl~tg~~~-----~------------lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~-~~~Lt 346 (448)
T PRK04792 286 PEIYVVDIATKALT-----R------------ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK-VSRLT 346 (448)
T ss_pred eEEEEEECCCCCeE-----E------------CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEEe
Confidence 777788766531 1 1112234567899999998876432 3 456666654 33 33332
Q ss_pred eccccccccccccccCCccceeeEEEcCCCCEEEEEeC-CC--cEEEEecCCCceeeeeecCCCcceeEEEECCCCCcee
Q 010256 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN--LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 457 (514)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 457 (514)
..... ....+|+|||++|+..+. ++ .|.++|+.++... .+.... ......|+|+++.|+
T Consensus 347 ~~g~~---------------~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~--~lt~~~-~d~~ps~spdG~~I~ 408 (448)
T PRK04792 347 FEGEQ---------------NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ--VLTSTR-LDESPSVAPNGTMVI 408 (448)
T ss_pred cCCCC---------------CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE--EccCCC-CCCCceECCCCCEEE
Confidence 11111 015789999999886654 34 4566777766432 222221 223457999999887
Q ss_pred ecCCC-Ce--EEE--eeCCCCCccccCCcccccccceEEEEEcCC
Q 010256 458 LGSLS-GV--VRR--VKGADNSALDANGNAFDFSMKLLHLAWHPS 497 (514)
Q Consensus 458 s~s~d-~~--v~i--~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 497 (514)
..+.+ +. +.+ .+|.... .+. ...+.+...+|+|-
T Consensus 409 ~~~~~~g~~~l~~~~~~G~~~~--~l~----~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 409 YSTTYQGKQVLAAVSIDGRFKA--RLP----AGQGEVKSPAWSPF 447 (448)
T ss_pred EEEecCCceEEEEEECCCCceE--ECc----CCCCCcCCCccCCC
Confidence 76544 33 333 2222221 111 13456778888873
No 252
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=4.6e-11 Score=115.67 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=120.7
Q ss_pred EEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcc
Q 010256 239 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (514)
Q Consensus 239 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~ 317 (514)
+.++++.-++++| .-+.|.+|+....+.. ..+.+|.+.|.++.++.+| .++++.|.|+.+|+|++.+.+.
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p--------~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~ 209 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKP--------IRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREV 209 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCc--------ceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccc
Confidence 3456777788888 8999999998733322 2478999999999999999 8999999999999999998765
Q ss_pred ccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccC
Q 010256 318 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND 396 (514)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (514)
.. ...-+|...+..+.|.|+ .++++ .|.+.++|+.. +..+..+..|...
T Consensus 210 ~~---------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~y~~h~g~----------- 259 (967)
T KOG0974|consen 210 LG---------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQLEVYDEHSGK----------- 259 (967)
T ss_pred cC---------------cccccccceeEEEEeccc--eeEEeccceEEEEEecc--cceehhhhhhhhc-----------
Confidence 31 124578899999999998 66664 56999999776 6666777777642
Q ss_pred CccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 397 SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 397 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
.++.++..++.-.++|++.|+.+++|++..
T Consensus 260 ---~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 260 ---GIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ---ceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 245899999988999999999999999864
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=3.5e-10 Score=108.39 Aligned_cols=215 Identities=15% Similarity=0.156 Sum_probs=128.7
Q ss_pred ccCccCeEEEEECCCCCEEEEe--cC--CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEE-EEecC
Q 010256 230 HAHDYHINSISNNSDGETFISA--DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSK 304 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~-~~~~d 304 (514)
..+...+....|+|||+.|+.. .+ ..|.+|++.++... . +....+.+....|+|+| +.|+ +.+.+
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~--------l~~~~g~~~~~~~SpDG-~~la~~~~~~ 264 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-Q--------ITNFEGLNGAPAWSPDG-SKLAFVLSKD 264 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-E--------ccCCCCCcCCeEECCCC-CEEEEEEccC
Confidence 3455678899999999998765 33 46889999865432 1 12223344568999999 5555 55555
Q ss_pred C--eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC----CeEEEEEccCCCCceee
Q 010256 305 G--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVAT 378 (514)
Q Consensus 305 g--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~----~~i~iwd~~~~~~~~~~ 378 (514)
| .|.+||+.++... .+ ..+........|+|||+.|+..++ ..|.++|+.. ++ ...
T Consensus 265 g~~~Iy~~d~~~~~~~-----~l------------t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~-~~~ 325 (430)
T PRK00178 265 GNPEIYVMDLASRQLS-----RV------------TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR-AER 325 (430)
T ss_pred CCceEEEEECCCCCeE-----Ec------------ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 5 5888898876531 11 112234556789999998876543 3566677764 33 233
Q ss_pred eeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC-C--cEEEEecCCCceeeeeecCCCcceeEEEECCCCCc
Q 010256 379 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-N--LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS 455 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 455 (514)
+...... .....|+|||++|+..+.+ + .|.+||+.+++.. .+.. ........|+|+|++
T Consensus 326 lt~~~~~---------------~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~--~lt~-~~~~~~p~~spdg~~ 387 (430)
T PRK00178 326 VTFVGNY---------------NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR--ILTD-TSLDESPSVAPNGTM 387 (430)
T ss_pred eecCCCC---------------ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE--EccC-CCCCCCceECCCCCE
Confidence 3211110 0157899999999876543 3 5888999876433 2221 112235689999999
Q ss_pred eeecCCC-Ce--EEE--eeCCCCCccccCCcccccccceEEEEEcCC
Q 010256 456 RPLGSLS-GV--VRR--VKGADNSALDANGNAFDFSMKLLHLAWHPS 497 (514)
Q Consensus 456 l~s~s~d-~~--v~i--~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 497 (514)
++..+.+ +. +.+ .+|.... .+. ...+.+...+|+|-
T Consensus 388 i~~~~~~~g~~~l~~~~~~g~~~~--~l~----~~~g~~~~p~ws~~ 428 (430)
T PRK00178 388 LIYATRQQGRGVLMLVSINGRVRL--PLP----TAQGEVREPSWSPY 428 (430)
T ss_pred EEEEEecCCceEEEEEECCCCceE--ECc----CCCCCcCCCccCCC
Confidence 8877654 33 333 2222111 111 13456777888874
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=1.3e-09 Score=104.59 Aligned_cols=167 Identities=11% Similarity=0.140 Sum_probs=96.8
Q ss_pred EEEECCCCCEEEEe--cCC--eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-cCC--eEEEE
Q 010256 238 SISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG--SIRLI 310 (514)
Q Consensus 238 ~~~~~~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg--~i~~w 310 (514)
..+|+|||+.|+.. .++ .|++||++++.. . .+..+........|+|++ +.++..+ .++ .|.++
T Consensus 247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~--------~lt~~~~~~~~~~~spDg-~~i~f~s~~~g~~~iy~~ 316 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-S--------RVTNHPAIDTEPFWGKDG-RTLYFTSDRGGKPQIYKV 316 (430)
T ss_pred CeEECCCCCEEEEEEccCCCceEEEEECCCCCe-E--------EcccCCCCcCCeEECCCC-CEEEEEECCCCCceEEEE
Confidence 47799999887743 344 688889885432 2 122334445678899999 5555444 344 56667
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--C--CeEEEEEccCCCCceeeeeeccccc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~--~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
|+.+++.. . ..+.. .......|+|+|+.|+... + ..|.+||+.+ ++ ...+... ...
T Consensus 317 d~~~g~~~-~--lt~~~--------------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t-g~-~~~lt~~-~~~ 376 (430)
T PRK00178 317 NVNGGRAE-R--VTFVG--------------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR-GS-VRILTDT-SLD 376 (430)
T ss_pred ECCCCCEE-E--eecCC--------------CCccceEECCCCCEEEEEEccCCceEEEEEECCC-CC-EEEccCC-CCC
Confidence 77665531 0 01111 1234578999999998753 2 3578888875 33 2333211 110
Q ss_pred cccccccccCCccceeeEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCCcceeEEEECC
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 451 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 451 (514)
....|+|||++|+..+.+ ..++++++... ....+..+...+....|+|
T Consensus 377 ---------------~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~--~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 377 ---------------ESPSVAPNGTMLIYATRQQGRGVLMLVSINGR--VRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred ---------------CCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEECcCCCCCcCCCccCC
Confidence 156899999998866543 34667777533 2233444444455555655
No 255
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.29 E-value=1.6e-07 Score=96.46 Aligned_cols=383 Identities=12% Similarity=0.136 Sum_probs=196.3
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccc----cccCCccceeeeeeccCCCcc------c
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDY----SMSRHPEFRYKTEFQSHEPEF------D 104 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~h~~~~------~ 104 (514)
...|.|++||||++.||..+.+|+|.+-... -..+.+....-...+. .+-| ++-.+.|+|...+- +
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGW---GkKeTQF~Gs~gK~aa~~~~~ 195 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGW---GKKETQFHGSAGKAAARQLRD 195 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeecc---CcccCccCcchhhhhhhhccC
Confidence 4689999999999999999999998876532 1111110000000000 0000 00011122211110 0
Q ss_pred c-c-----cccccccceeEEEEeeCCCCcEEEEeeC------CCeEEEEEcCccEEEEEeeccCCCccccCCcceecccc
Q 010256 105 Y-L-----KSLEIEEKINKIRWCQSANSALYLLSTN------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (514)
Q Consensus 105 ~-~-----~~~~~~~~v~~i~~~~~~~~~~l~s~~~------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (514)
. + ..+...+.-..|.| ..||.++|+.+. -+.+|||+-+ |++....+.. .+.-
T Consensus 196 p~~~~~d~~~~s~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v--------~gLe----- 259 (928)
T PF04762_consen 196 PTVPKVDEGKLSWDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV--------DGLE----- 259 (928)
T ss_pred CCCCccccCccccCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC--------CCcc-----
Confidence 0 0 00112345677889 899999998753 2689999876 5544433311 0111
Q ss_pred cCCceeeccCCCccccccCCCCCCcccCCCC---CCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE
Q 010256 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGG---VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (514)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 249 (514)
..++|.|.|+.+ ++... ...|.+|. .+....++....+ ......|..++|++|+..||
T Consensus 260 --~~l~WrPsG~lI------------A~~q~~~~~~~VvFfE----rNGLrhgeF~l~~-~~~~~~v~~l~Wn~ds~iLA 320 (928)
T PF04762_consen 260 --GALSWRPSGNLI------------ASSQRLPDRHDVVFFE----RNGLRHGEFTLRF-DPEEEKVIELAWNSDSEILA 320 (928)
T ss_pred --CCccCCCCCCEE------------EEEEEcCCCcEEEEEe----cCCcEeeeEecCC-CCCCceeeEEEECCCCCEEE
Confidence 178999999987 33322 23444443 2221111111111 23456789999999999999
Q ss_pred Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCC----Cccc----cc
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ----SALC----DT 320 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~----~~~~----~~ 320 (514)
.. .|. |.+|...+-.-..+.. ..+. ....+..+.|+|..+..|...+.+|.+..+++.- +... ..
T Consensus 321 v~~~~~-vqLWt~~NYHWYLKqe----i~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g 394 (928)
T PF04762_consen 321 VWLEDR-VQLWTRSNYHWYLKQE----IRFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNG 394 (928)
T ss_pred EEecCC-ceEEEeeCCEEEEEEE----EEcc-CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCce
Confidence 98 555 9999887443222110 0111 2233445999998877888888877776655431 1100 00
Q ss_pred cc----------cceeccCCCCcccee-eccccceeEEEEecCCCEEEE-EeCCeEEEEEccCCCCc-------eeeeee
Q 010256 321 HS----------KLFEEQEAPGTRSFF-TEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGP-------VATFQV 381 (514)
Q Consensus 321 ~~----------~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~g~~l~~-~~~~~i~iwd~~~~~~~-------~~~~~~ 381 (514)
.+ ..|....-|.+.... -....+|.+++|++++..+++ -+++.|.+|........ ...+..
T Consensus 395 ~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 474 (928)
T PF04762_consen 395 TVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISL 474 (928)
T ss_pred EEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccc
Confidence 01 112211112221111 122468999999998876666 46799999986541111 011111
Q ss_pred ccccccccccccccCCccceeeEEEcCCCCEEEEEeCC---CcEEEEecCCCce--eeeeecCCCcceeEEEECCCCCce
Q 010256 382 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSA--ESTTLEASKNPMRRQVQTPSRPSR 456 (514)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l 456 (514)
.... ... . ......+..++|..+..+++....+ ..+.+++...... .......-...+......++...+
T Consensus 475 ~~~~---~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (928)
T PF04762_consen 475 DSMD---ISD-S-ELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSL 549 (928)
T ss_pred cccc---ccc-c-ccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEE
Confidence 0000 000 0 0001113368888777776665554 6788888743321 112222223344444444444435
Q ss_pred eecCCCCeEEE
Q 010256 457 PLGSLSGVVRR 467 (514)
Q Consensus 457 ~s~s~d~~v~i 467 (514)
+.-..||.+..
T Consensus 550 ~~q~~~G~v~~ 560 (928)
T PF04762_consen 550 YIQTNDGKVFQ 560 (928)
T ss_pred EEEECCCEEEE
Confidence 55556777765
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.27 E-value=1.4e-09 Score=99.24 Aligned_cols=146 Identities=12% Similarity=0.154 Sum_probs=114.1
Q ss_pred CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccc
Q 010256 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (514)
Q Consensus 244 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 322 (514)
+...++-| ..|.|.+|+...++....+ .-..|.+.|.++.++.+- ..|.+++.|+.+..|+...... +
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~------st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~----~ 137 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKL------STDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVI----I 137 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEE------ecCCCCCcceeeeccccc-CceEecCCceeEEEEeccccee----e
Confidence 44567778 8999999999866655443 335689999999999887 7899999999999999988765 3
Q ss_pred cceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCcccee
Q 010256 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 402 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 402 (514)
+.++... ..+.+++.+|||..+++++. .|++||+.+ .+.+.++.+|...++
T Consensus 138 ~~~~~~~------------~~~~sl~is~D~~~l~~as~-~ik~~~~~~-kevv~~ftgh~s~v~--------------- 188 (541)
T KOG4547|consen 138 RIWKEQK------------PLVSSLCISPDGKILLTASR-QIKVLDIET-KEVVITFTGHGSPVR--------------- 188 (541)
T ss_pred eeeccCC------------CccceEEEcCCCCEEEeccc-eEEEEEccC-ceEEEEecCCCcceE---------------
Confidence 4444333 46899999999999998764 899999998 999999999998765
Q ss_pred eEEEcCC-----CCEEEE-EeCCCcEEEEecCC
Q 010256 403 ECCLSGD-----GGRVAT-GSYSNLFRVFGCSE 429 (514)
Q Consensus 403 ~~~~s~~-----~~~l~s-~~~dg~i~iwd~~~ 429 (514)
++.|..+ |.++.+ ...+.-+.+|-+..
T Consensus 189 t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 189 TLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 6777665 666554 44556677887654
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.27 E-value=9e-10 Score=91.65 Aligned_cols=210 Identities=16% Similarity=0.129 Sum_probs=131.9
Q ss_pred cceeEEEEeeCCCC-c-EEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 113 EKINKIRWCQSANS-A-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 113 ~~v~~i~~~~~~~~-~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..+..+.|+..+.+ . .++-+..+|.|.++..........+..- ...... ..-+.++.|++.+..+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~l----s~~ki~-----~~~~lslD~~~~~~~i---- 136 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGL----SSKKIS-----VVEALSLDISTSGTKI---- 136 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeeccc----chhhhh-----heeeeEEEeeccCceE----
Confidence 56788888764433 3 3555678899999987654432222111 000000 0012266788888777
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCcee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
+++..+|.+.+-+ ..+. ..+..+ ..+.|..+++-..|+.. .+.+.+| +|+.+..||++.++..+
T Consensus 137 --------~vs~s~G~~~~v~---~t~~--~le~vq-~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 137 --------FVSDSRGSISGVY---ETEM--VLEKVQ-TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred --------EEEcCCCcEEEEe---ccee--eeeecc-cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 8888888877433 1111 111111 24789999999999764 5677888 99999999999555332
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
. ....-|...|.+|.-+|..+.++++|+.|-.|++||.|+-... + ++. ...+.|..+.
T Consensus 203 ~------~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP---l--~~~-----------~v~GGVWRi~ 260 (339)
T KOG0280|consen 203 W------HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP---L--FKA-----------KVGGGVWRIK 260 (339)
T ss_pred e------ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc---c--ccC-----------ccccceEEEE
Confidence 2 1345588899999998876689999999999999999964321 1 111 1126899999
Q ss_pred EecC--CCEEEEEeCCeEEEEEccC
Q 010256 349 FARN--GRHILSRDYMTLKLWDINM 371 (514)
Q Consensus 349 ~s~~--g~~l~~~~~~~i~iwd~~~ 371 (514)
++|. +++|+++-..-.+|-+...
T Consensus 261 ~~p~~~~~lL~~CMh~G~ki~~~~~ 285 (339)
T KOG0280|consen 261 HHPEIFHRLLAACMHNGAKILDSSD 285 (339)
T ss_pred ecchhhhHHHHHHHhcCceEEEecc
Confidence 9984 3344444333345555543
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.26 E-value=8.7e-10 Score=100.57 Aligned_cols=115 Identities=17% Similarity=0.267 Sum_probs=91.2
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
..|.+.|.++.++.+-..|.++ .|+.+..|+..... .+++ .......+.+++.+||+ ..+++++ +.|+
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-~~~~-------~~~~~~~~~sl~is~D~-~~l~~as--~~ik 167 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-IIRI-------WKEQKPLVSSLCISPDG-KILLTAS--RQIK 167 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecccce-eeee-------eccCCCccceEEEcCCC-CEEEecc--ceEE
Confidence 5788999999999998889988 99999999998443 3333 34456678899999998 7888776 6999
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC-----CCEEEEEeC--CeEEEEEccC
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-----GRHILSRDY--MTLKLWDINM 371 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~~~~~--~~i~iwd~~~ 371 (514)
+||+++++.+ ..|++|.++|++++|--+ |.++.++.. ..+.+|-+..
T Consensus 168 ~~~~~~kevv----------------~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 168 VLDIETKEVV----------------ITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEccCceEE----------------EEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999998873 236778899999999876 888888543 5677777654
No 259
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.6e-09 Score=102.55 Aligned_cols=221 Identities=15% Similarity=0.094 Sum_probs=122.1
Q ss_pred CccCeEEEEECCCCCEEE---Ee-cC--CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-cC
Q 010256 232 HDYHINSISNNSDGETFI---SA-DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SK 304 (514)
Q Consensus 232 h~~~v~~~~~~~~~~~l~---s~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~d 304 (514)
.......-.|+|||+.++ +. .+ ..|.+.++..++.. .+ ....+.....+|+||| +.|+..+ .+
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~l--------t~~~g~~~~p~wSPDG-~~Laf~s~~~ 252 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KI--------LALQGNQLMPTFSPRK-KLLAFISDRY 252 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-Ee--------ecCCCCccceEECCCC-CEEEEEECCC
Confidence 334566789999987522 33 33 46777788754322 22 2233444568999999 5665544 23
Q ss_pred C----eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEE--ccCCCCce
Q 010256 305 G----SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWD--INMDSGPV 376 (514)
Q Consensus 305 g----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd--~~~~~~~~ 376 (514)
| .+.+|++..+... ...+.. .+..+.....+|+|||+.|+..++ +...||. +...+...
T Consensus 253 g~~di~~~~~~~~~g~~g-~~~~lt------------~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 253 GNPDLFIQSFSLETGAIG-KPRRLL------------NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CCcceeEEEeecccCCCC-cceEee------------cCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 3 3444666543110 001111 111123466899999998887543 5455554 43212223
Q ss_pred eeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCCcceeEEEECCCC
Q 010256 377 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR 453 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (514)
..+...... +....|+|||+.|+..+.+ ..|++||+.+++.. .+......+....|+||+
T Consensus 320 ~~lt~~~~~---------------~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~--~Lt~~~~~~~~p~wSpDG 382 (428)
T PRK01029 320 RLLTKKYRN---------------SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY--QLTTSPENKESPSWAIDS 382 (428)
T ss_pred EEeccCCCC---------------ccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE--EccCCCCCccceEECCCC
Confidence 333322211 1268999999998866543 46999999887543 333333456678999999
Q ss_pred CceeecCC-C--CeEEEe--eCCCCCccccCCcccccccceEEEEEcCCC
Q 010256 454 PSRPLGSL-S--GVVRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSE 498 (514)
Q Consensus 454 ~~l~s~s~-d--~~v~i~--~~~~~~~~~~~~~~~~~~~~v~~~~~spd~ 498 (514)
+.|+..+. + ..+.++ ++.+.. .+ ....+.+...+|+|-.
T Consensus 383 ~~L~f~~~~~g~~~L~~vdl~~g~~~--~L----t~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 383 LHLVYSAGNSNESELYLISLITKKTR--KI----VIGSGEKRFPSWGAFP 426 (428)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEE--Ee----ecCCCcccCceecCCC
Confidence 98875433 2 334442 222221 11 1124556778888754
No 260
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.26 E-value=1.8e-07 Score=96.06 Aligned_cols=349 Identities=13% Similarity=0.141 Sum_probs=189.0
Q ss_pred cccceEEEEEcCCCCeEEEecCCCeEEEEEe----cCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFER----TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
..+.|.++.+-++...|+.+..+|.|.+... .+... .....+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~---------------------E~VG~v------------- 119 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI---------------------EIVGSV------------- 119 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee---------------------EEEEEE-------------
Confidence 3478999999999999999999999999933 22221 011111
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcC----c---------c--EEE------EEeeccCCCccc-------
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQ----E---------K--KVK------KVFDWNVHPEKA------- 161 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~----~---------~--~~~------~~~~~~~~~~~~------- 161 (514)
+..|.+++| +||+..|+.++.++++.+-.-. . | +.. +..+++......
T Consensus 120 --d~GI~a~~W--SPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~ 195 (928)
T PF04762_consen 120 --DSGILAASW--SPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRD 195 (928)
T ss_pred --cCcEEEEEE--CCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccC
Confidence 277999999 5677799999888888775321 0 0 000 011111111111
Q ss_pred -----cCCcceecccccCCceeeccCCCccccccCCCCCCcccCCC------CCCcEEeceeeccccccccccccccccc
Q 010256 162 -----AGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG------GVSSLRLPVVVTSQETNLVAGCRRIYAH 230 (514)
Q Consensus 162 -----~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~i~i~~~~~~~~~~~~~~~~~~~~~ 230 (514)
...+.+. .+.....++|..||+++ ++.. ....+|+|+ .+....... .
T Consensus 196 p~~~~~d~~~~s-~dd~~~~ISWRGDG~yF------------AVss~~~~~~~~R~iRVy~----ReG~L~stS-----E 253 (928)
T PF04762_consen 196 PTVPKVDEGKLS-WDDGRVRISWRGDGEYF------------AVSSVEPETGSRRVIRVYS----REGELQSTS-----E 253 (928)
T ss_pred CCCCccccCccc-cCCCceEEEECCCCcEE------------EEEEEEcCCCceeEEEEEC----CCceEEecc-----c
Confidence 0011222 23344478899999987 4333 235778777 443211111 1
Q ss_pred cCccCeEEEEECCCCCEEEEe-c---CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCe
Q 010256 231 AHDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
.-.+--.+++|-|.|++||+. . ...|.+|.-+ +....-+.+ .+......|..+.|++++ ..||....|.
T Consensus 254 ~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN--GLrhgeF~l---~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~- 326 (928)
T PF04762_consen 254 PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN--GLRHGEFTL---RFDPEEEKVIELAWNSDS-EILAVWLEDR- 326 (928)
T ss_pred cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC--CcEeeeEec---CCCCCCceeeEEEECCCC-CEEEEEecCC-
Confidence 111223478999999999997 2 4567777654 222222211 122356778999999999 8888877555
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC-CEEEEEeC-CeEEEEEc----cCC-C------
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRDY-MTLKLWDI----NMD-S------ 373 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~-~~i~iwd~----~~~-~------ 373 (514)
|.+|-..+..-..+....+... ..+..+.|+|.. ..|..... +.+..+++ ... +
T Consensus 327 vqLWt~~NYHWYLKqei~~~~~-------------~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~ 393 (928)
T PF04762_consen 327 VQLWTRSNYHWYLKQEIRFSSS-------------ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDN 393 (928)
T ss_pred ceEEEeeCCEEEEEEEEEccCC-------------CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCc
Confidence 9999887644221111111111 223447777733 22333322 44443332 110 0
Q ss_pred Cceeeeeecc--------ccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee-------eeee-
Q 010256 374 GPVATFQVHE--------HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-------STTL- 437 (514)
Q Consensus 374 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-------~~~~- 437 (514)
..+..+.+.. ..++.....+.-.--..|.+++|++++..+++-..||.|.+|........ ...+
T Consensus 394 g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 473 (928)
T PF04762_consen 394 GTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSIS 473 (928)
T ss_pred eEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcc
Confidence 0111111111 11111111111111124568999999988999999999999985442111 0111
Q ss_pred ---------cCCCcceeEEEECCCCCceeecCCC
Q 010256 438 ---------EASKNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 438 ---------~~~~~~v~~~~~~~~~~~l~s~s~d 462 (514)
......+..++|..+..+++....+
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (928)
T PF04762_consen 474 LDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSD 507 (928)
T ss_pred cccccccccccccccEEEEEEeCCCEEEEEEecC
Confidence 1123456778887777766666554
No 261
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=1.8e-09 Score=100.63 Aligned_cols=249 Identities=10% Similarity=0.098 Sum_probs=159.0
Q ss_pred cccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010256 229 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 307 (514)
+.||+..|.-+.|+...+.|.++ .+|.|.+|-+-.+.-.-+.+ -....+.|.+++|+.+| ..+.....||.|
T Consensus 67 LeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi------NnRnKSvV~SmsWn~dG-~kIcIvYeDGav 139 (1189)
T KOG2041|consen 67 LEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI------NNRNKSVVVSMSWNLDG-TKICIVYEDGAV 139 (1189)
T ss_pred hccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHh------hCcCccEEEEEEEcCCC-cEEEEEEccCCE
Confidence 58999999999999999999999 89999999987654433221 12246778999999999 889999999998
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCC----ceeeeeec
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG----PVATFQVH 382 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~----~~~~~~~~ 382 (514)
.+=.+...+... +.+++. -...+.|++|.+.++.+-. |.+.++|...+.. .-....+.
T Consensus 140 IVGsvdGNRIwg---KeLkg~--------------~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~t 202 (1189)
T KOG2041|consen 140 IVGSVDGNRIWG---KELKGQ--------------LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGT 202 (1189)
T ss_pred EEEeeccceecc---hhcchh--------------eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeee
Confidence 887766554321 122221 2457899999988877644 8999999763110 00111111
Q ss_pred cc---cccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeec
Q 010256 383 EH---LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 383 ~~---~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
.. ...++....++... -.-.-||...|+.+-..|++.|..-.+.... ..+... -.+....|+++|.+||.+
T Consensus 203 g~~s~~~~kia~i~w~~g~----~~~v~pdrP~lavcy~nGr~QiMR~eND~~P-vv~dtg-m~~vgakWnh~G~vLAvc 276 (1189)
T KOG2041|consen 203 GIFSNFPTKIAEIEWNTGP----YQPVPPDRPRLAVCYANGRMQIMRSENDPEP-VVVDTG-MKIVGAKWNHNGAVLAVC 276 (1189)
T ss_pred eeecCCCccccceeeccCc----cccCCCCCCEEEEEEcCceehhhhhcCCCCC-eEEecc-cEeecceecCCCcEEEEc
Confidence 10 01111111111110 1122467888999999999999876654332 233222 456688999999999999
Q ss_pred CCCCe---------EEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEE
Q 010256 460 SLSGV---------VRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYM 511 (514)
Q Consensus 460 s~d~~---------v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i 511 (514)
+.|.- |.++. +.+ .+.+..--....|+.+.|--.|-.||.+.+.-+++
T Consensus 277 G~~~da~~~~d~n~v~Fys---p~G-~i~gtlkvpg~~It~lsWEg~gLriA~Avdsfiyf 333 (1189)
T KOG2041|consen 277 GNDSDADEPTDSNKVHFYS---PYG-HIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYF 333 (1189)
T ss_pred cCcccccCccccceEEEec---cch-hheEEEecCCceeeeeEEcCCceEEEEEecceEEE
Confidence 87632 22210 000 01111112467899999999999999887774443
No 262
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=5.6e-10 Score=108.34 Aligned_cols=196 Identities=15% Similarity=0.107 Sum_probs=141.0
Q ss_pred CCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC
Q 010256 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 361 (514)
Q Consensus 282 ~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 361 (514)
...+....+.-.. ..++.++.+..+.+||...+....+ ....+ +..+ ....-+.++++.-++++|+-
T Consensus 87 s~wi~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~----i~~~e----r~~l----~~~~~~g~s~~~~~i~~gsv 153 (967)
T KOG0974|consen 87 SDWIFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSK----IQSDE----RCTL----YSSLIIGDSAEELYIASGSV 153 (967)
T ss_pred cccccccchhhhc-ceEEEEEcCceEEEEecccCceehh----cCCCc----eEEE----EeEEEEeccCcEEEEEeccc
Confidence 3444445555555 6888899999999999987665321 11100 0000 12333445667778888876
Q ss_pred -CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC
Q 010256 362 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 440 (514)
Q Consensus 362 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 440 (514)
+.|.+|+.....++. .+.+|++. ++++.|+-||+++++.|+|.++|+|++.+.+....+.-+|
T Consensus 154 ~~~iivW~~~~dn~p~-~l~GHeG~---------------iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH 217 (967)
T KOG0974|consen 154 FGEIIVWKPHEDNKPI-RLKGHEGS---------------IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH 217 (967)
T ss_pred cccEEEEeccccCCcc-eecccCCc---------------eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc
Confidence 999999998533333 67888875 4599999999999999999999999999987666788899
Q ss_pred CcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccccc-ccceEEEEEcCCCCEEEEEe-cCcEEEE
Q 010256 441 KNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF-SMKLLHLAWHPSENSIACAA-SNSLYMY 512 (514)
Q Consensus 441 ~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~-~~~v~~~~~spd~~~l~~~~-~~~~~i~ 512 (514)
+..++++++.|. .++++++|.+.++. .....++. .+.+| .+.|..++.+++...+++++ +.++.+|
T Consensus 218 saRvw~~~~~~n--~i~t~gedctcrvW---~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~ 285 (967)
T KOG0974|consen 218 SARVWACCFLPN--RIITVGEDCTCRVW---GVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLW 285 (967)
T ss_pred cceeEEEEeccc--eeEEeccceEEEEE---ecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhh
Confidence 999999999999 99999999999993 11111122 22233 46789999999988888777 5555554
No 263
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.25 E-value=5.3e-10 Score=95.00 Aligned_cols=209 Identities=11% Similarity=0.197 Sum_probs=137.5
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
...-..++++++++++-..|+.|-.+|++.-+.+...-. ...+.+....|.
T Consensus 64 ~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-------------------km~~~r~~~~h~---------- 114 (404)
T KOG1409|consen 64 YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-------------------KMTFLKDYLAHQ---------- 114 (404)
T ss_pred hhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-------------------hcchhhhhhhhh----------
Confidence 334568899999999999999999999999888753211 011233445565
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|..+-|. ..-+.+++.+.|..+.---.+.+....-..+... ++.+.+.-.
T Consensus 115 --~~v~~~if~--~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~----------------~t~~~~d~~-------- 166 (404)
T KOG1409|consen 115 --ARVSAIVFS--LTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP----------------ASALQFDAL-------- 166 (404)
T ss_pred --cceeeEEec--CCceeEEEeccccceEEEeeccCCcccceEeecc----------------CCCCceeeE--------
Confidence 789999994 4445899999988776544444432111111100 001111100
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+.+.|...+.+.+-.+.... -..... +.+|.+.+.+++|.+....|.+| .|..+.+||+--.... .
T Consensus 167 ------~~fvGd~~gqvt~lr~~~~~-----~~~i~~-~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-~ 233 (404)
T KOG1409|consen 167 ------YAFVGDHSGQITMLKLEQNG-----CQLITT-FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-A 233 (404)
T ss_pred ------EEEecccccceEEEEEeecC-----CceEEE-EcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-e
Confidence 22556666666543311111 011112 37999999999999999999999 9999999999733322 2
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCc
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 316 (514)
. .+.+|...|..+...+.- ..+.+++.||.|.+||++...
T Consensus 234 ~------el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 234 Y------ELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred e------eeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEecccee
Confidence 1 467889999999888776 789999999999999997643
No 264
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.24 E-value=2.4e-10 Score=95.68 Aligned_cols=223 Identities=16% Similarity=0.136 Sum_probs=129.6
Q ss_pred cCeEEEEECCC---CCEEEEecCCeEEEEeccCCCc---------------------------------eeeeeccCCCc
Q 010256 234 YHINSISNNSD---GETFISADDLRINLWNLEISNQ---------------------------------SFNIVDVKPAN 277 (514)
Q Consensus 234 ~~v~~~~~~~~---~~~l~s~~d~~i~iwd~~~~~~---------------------------------~~~~~~~~~~~ 277 (514)
..|..+.|..+ ..+|+++.|.+|++|.+..... ...++..+|..
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 45677777654 3457777999999999864310 01112223321
Q ss_pred --ccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCC-
Q 010256 278 --MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR- 354 (514)
Q Consensus 278 --~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~- 354 (514)
...|...|.++.|+.|. ..++ .+.|=+|.+|++.-...... +..++.+. ......-|++..|+|...
T Consensus 166 vyaNaH~yhiNSiS~NsD~-et~l-SaDdLrINLWnl~i~D~sFn-IVDiKP~n-------meeLteVItSaeFhp~~cn 235 (460)
T COG5170 166 VYANAHPYHINSISFNSDK-ETLL-SADDLRINLWNLEIIDGSFN-IVDIKPHN-------MEELTEVITSAEFHPEMCN 235 (460)
T ss_pred eccccceeEeeeeeecCch-heee-eccceeeeeccccccCCceE-EEeccCcc-------HHHHHHHHhhcccCHhHcc
Confidence 13566778899999886 5555 45678999999875332211 11111111 222335688999999533
Q ss_pred -EEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 355 -HILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 355 -~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
++++.+.|.|++-|++...-+...-...+.....+..-+-.+.+..|..+.|+++|+||++-+. -+|+|||+...+..
T Consensus 236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p 314 (460)
T COG5170 236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP 314 (460)
T ss_pred eEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC
Confidence 4445566999999998422111111110000111111111122334558999999999987665 68999999876665
Q ss_pred eeeecCCC------------cce---eEEEECCCCCceeecCCCCeEEE
Q 010256 434 STTLEASK------------NPM---RRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 434 ~~~~~~~~------------~~v---~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
..+..-|. ..| ..+.|+.|.+.+++||-....-+
T Consensus 315 ikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgi 363 (460)
T COG5170 315 IKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGI 363 (460)
T ss_pred ceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceee
Confidence 56654332 222 35677888888888876655544
No 265
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.20 E-value=1.7e-08 Score=90.69 Aligned_cols=311 Identities=13% Similarity=0.087 Sum_probs=180.2
Q ss_pred cceEEEEEcCCCCeEEEecCCC---------------eEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCC
Q 010256 36 DIISAIEFDKSGDHLATGDRGG---------------RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE 100 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg---------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 100 (514)
..|..+.|||.++||.|=+..+ .+.+||..++..+ ..+.+-.
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv-----------------------~sf~~~~ 128 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIV-----------------------FSFNGIS 128 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeE-----------------------eeccccC
Confidence 4688899999999999865433 4899999887743 2232222
Q ss_pred Ccccccccccccccee-EEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceee
Q 010256 101 PEFDYLKSLEIEEKIN-KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY 179 (514)
Q Consensus 101 ~~~~~~~~~~~~~~v~-~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 179 (514)
.. .... -+.| +-++.++|-. ....+.|+++ ++......... +....+. ...|
T Consensus 129 q~----------~~~Wp~~k~--s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~------lr~~gi~-------dFsi 181 (561)
T COG5354 129 QP----------YLGWPVLKF--SIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKN------LRPVGIL-------DFSI 181 (561)
T ss_pred Cc----------ccccceeee--eecchhhhhh-ccCeEEEEec-CCccccCchhh------cccccee-------eEEe
Confidence 00 0122 4567 3444455544 3457888887 33322110000 0011111 4556
Q ss_pred ccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--------
Q 010256 180 MANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-------- 251 (514)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-------- 251 (514)
+|.++.-.+. .-.--..+..+.+++|.|. ...... ...+.. -.=..+.|++.|++|+.-
T Consensus 182 sP~~n~~~la-----~~tPEk~~kpa~~~i~sIp-~~s~l~----tk~lfk---~~~~qLkW~~~g~~ll~l~~t~~ksn 248 (561)
T COG5354 182 SPEGNHDELA-----YWTPEKLNKPAMVRILSIP-KNSVLV----TKNLFK---VSGVQLKWQVLGKYLLVLVMTHTKSN 248 (561)
T ss_pred cCCCCCceEE-----EEccccCCCCcEEEEEEcc-CCCeee----eeeeEe---ecccEEEEecCCceEEEEEEEeeecc
Confidence 6665332100 0000124556677877732 111100 011101 111357788888887641
Q ss_pred ----cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEE--ecCCeEEEEEcCCCccccccccce
Q 010256 252 ----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS--SSKGSIRLIDMRQSALCDTHSKLF 325 (514)
Q Consensus 252 ----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~--~~dg~i~~wd~~~~~~~~~~~~~~ 325 (514)
....++|+++....... .....++|...+|.|.+ +.|++. -.+..+.++|++..-. ..+
T Consensus 249 KsyfgesnLyl~~~~e~~i~V---------~~~~~~pVhdf~W~p~S-~~F~vi~g~~pa~~s~~~lr~Nl~-----~~~ 313 (561)
T COG5354 249 KSYFGESNLYLLRITERSIPV---------EKDLKDPVHDFTWEPLS-SRFAVISGYMPASVSVFDLRGNLR-----FYF 313 (561)
T ss_pred cceeccceEEEEeecccccce---------eccccccceeeeecccC-CceeEEecccccceeecccccceE-----Eec
Confidence 13567788877222111 11457899999999998 555543 5788999999987621 111
Q ss_pred eccCCCCccceeeccccceeEEEEecCCCEEEEEe--C--CeEEEEEccCCCCceeeeeeccccccccccccccCCccce
Q 010256 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (514)
. + ..-..+.|+|.+++++.++ . |.+.+||.......+..+.+....
T Consensus 314 P--e------------~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s---------------- 363 (561)
T COG5354 314 P--E------------QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTS---------------- 363 (561)
T ss_pred C--C------------cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCce----------------
Confidence 1 1 2345678999999998843 2 899999987523333344443321
Q ss_pred eeEEEcCCCCEEEEEe------CCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCe
Q 010256 402 FECCLSGDGGRVATGS------YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (514)
Q Consensus 402 ~~~~~s~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~ 464 (514)
-+.|+||++++.+.. .|..+.|||+... .. ...+.+.|.|.+++..+.|.+..
T Consensus 364 -~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~-~~--------fel~~~~W~p~~~~~ttsSs~~~ 422 (561)
T COG5354 364 -YCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA-KV--------FELTNITWDPSGQYVTTSSSCPK 422 (561)
T ss_pred -EeeccCCceEEEecCCCcccccCcceEEEEecCc-hh--------hhhhhccccCCcccceeeccCCC
Confidence 578999999988653 4788999999743 11 14457788888888888877763
No 266
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=7.1e-09 Score=94.11 Aligned_cols=129 Identities=16% Similarity=0.259 Sum_probs=93.7
Q ss_pred CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEE--EEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA--YSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~--~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
+.++++.+++.....+. + ...++|.++.|+|++ +-|+ .|-.-..+.|||++..-. ++-.+
T Consensus 250 Eq~Lyll~t~g~s~~V~--------L-~k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr~~~v-------~df~e- 311 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVP--------L-LKEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLRGKPV-------FDFPE- 311 (566)
T ss_pred cceEEEEEecCceEEEe--------c-CCCCCceEEEECCCC-CEEEEEEecccceEEEEcCCCCEe-------EeCCC-
Confidence 34678888772222211 1 137899999999999 4444 345577899999976332 22222
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEe--C--CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (514)
++-+++-|+|.|++++.++ . |.+.|||+.+ .+.+..+...... -+.|
T Consensus 312 -----------gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~tt-----------------~~eW 362 (566)
T KOG2315|consen 312 -----------GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAANTT-----------------VFEW 362 (566)
T ss_pred -----------CCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccCCce-----------------EEEE
Confidence 5678899999999988743 3 9999999997 8888877665432 5899
Q ss_pred cCCCCEEEEEeC------CCcEEEEecC
Q 010256 407 SGDGGRVATGSY------SNLFRVFGCS 428 (514)
Q Consensus 407 s~~~~~l~s~~~------dg~i~iwd~~ 428 (514)
+|||++++|++. |+.++||+..
T Consensus 363 ~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 363 SPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred cCCCcEEEEEeccccEEecCCeEEEEec
Confidence 999999998864 6889999986
No 267
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.19 E-value=1.1e-07 Score=84.80 Aligned_cols=144 Identities=16% Similarity=0.238 Sum_probs=104.1
Q ss_pred cCccCeEEEEECCCCCEEEEe-cCC-eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010256 231 AHDYHINSISNNSDGETFISA-DDL-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
+|.+.|.-..+..+++-++.| .|| .+-++|.++++.. .....-+.|.++..+|+| +.++.+.....+.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k---------r~e~~lg~I~av~vs~dG-K~~vvaNdr~el~ 426 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK---------RIEKDLGNIEAVKVSPDG-KKVVVANDRFELW 426 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE---------EeeCCccceEEEEEcCCC-cEEEEEcCceEEE
Confidence 455667777777777788888 777 9999999865432 234456789999999999 8899899899999
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE---eC--CeEEEEEccCCCCceeeeeecc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---DY--MTLKLWDINMDSGPVATFQVHE 383 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~---~~--~~i~iwd~~~~~~~~~~~~~~~ 383 (514)
+.|+.++.. +..+..+ .+-|+.++|||+++++|-+ +. ..|+++|+.. ++.... ....
T Consensus 427 vididngnv-----~~idkS~-----------~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy~v-TT~t 488 (668)
T COG4946 427 VIDIDNGNV-----RLIDKSE-----------YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIYDV-TTPT 488 (668)
T ss_pred EEEecCCCe-----eEecccc-----------cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEEEe-cCCc
Confidence 999999874 3333222 2579999999999999975 22 7899999985 443322 2111
Q ss_pred ccccccccccccCCccceeeEEEcCCCCEEEEEe
Q 010256 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (514)
..- ++-+|.||+++|.--+
T Consensus 489 a~D---------------fsPaFD~d~ryLYfLs 507 (668)
T COG4946 489 AYD---------------FSPAFDPDGRYLYFLS 507 (668)
T ss_pred ccc---------------cCcccCCCCcEEEEEe
Confidence 110 1678999999877443
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.19 E-value=2.3e-07 Score=82.86 Aligned_cols=142 Identities=10% Similarity=0.069 Sum_probs=97.6
Q ss_pred CCceEEEEEecCCCcEEEEEecCC-eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe
Q 010256 282 TEVITSAEFHPTHCNMLAYSSSKG-SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360 (514)
Q Consensus 282 ~~~i~~v~~~p~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 360 (514)
...|.-..+..++ .-++.|..|| .+-+||.++++. +.++ +.-+.|.++..+|+|++++.+.
T Consensus 359 ~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~-----kr~e------------~~lg~I~av~vs~dGK~~vvaN 420 (668)
T COG4946 359 KGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEV-----KRIE------------KDLGNIEAVKVSPDGKKVVVAN 420 (668)
T ss_pred CCceEEEEEccCC-cceEEeccCCceEEEEecCCceE-----EEee------------CCccceEEEEEcCCCcEEEEEc
Confidence 3445555555555 5678888888 889999988763 2222 2236799999999999999998
Q ss_pred C-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCC----cEEEEecCCCceeee
Q 010256 361 Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN----LFRVFGCSEGSAEST 435 (514)
Q Consensus 361 ~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----~i~iwd~~~~~~~~~ 435 (514)
+ ..+.+.|+.+ +.....-+...+. |+.++|+|+++++|-+--+| .|+++|+..++....
T Consensus 421 dr~el~vididn-gnv~~idkS~~~l---------------Itdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 421 DRFELWVIDIDN-GNVRLIDKSEYGL---------------ITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred CceEEEEEEecC-CCeeEecccccce---------------eEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence 7 8999999987 5543333333333 45899999999999876654 689999997643222
Q ss_pred eecCCCcceeEEEECCCCCceeec
Q 010256 436 TLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 436 ~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
......-.+-+|.|++++|..-
T Consensus 485 --TT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 485 --TTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred --cCCcccccCcccCCCCcEEEEE
Confidence 2222233456788888876443
No 269
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=2e-08 Score=91.05 Aligned_cols=286 Identities=14% Similarity=0.201 Sum_probs=162.6
Q ss_pred ccccccceEEEEEcCCCCeEEEecC-----------CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccC
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDR-----------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH 99 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 99 (514)
.+.|+ .|.-+.|||+.+||+|=+. ...++|||+.+|... +.|...
T Consensus 246 RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk-----------------------rsF~~~ 301 (698)
T KOG2314|consen 246 RFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK-----------------------RSFPVI 301 (698)
T ss_pred hccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh-----------------------cceecc
Confidence 34564 5888999999999998662 247999999998754 111110
Q ss_pred CCccccccccccccc-eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCcee
Q 010256 100 EPEFDYLKSLEIEEK-INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (514)
Q Consensus 100 ~~~~~~~~~~~~~~~-v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (514)
. + .-. -.-..| +.|++++|-... ..|.||+...-.+.....++. ..|. ...
T Consensus 302 ~-------~---~~~~WP~frW--S~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki--------~gIr-------~Fs 353 (698)
T KOG2314|consen 302 K-------S---PYLKWPIFRW--SHDDKYFARMTG-NSISIYETPSFMLLDKKSLKI--------SGIR-------DFS 353 (698)
T ss_pred C-------C---CccccceEEe--ccCCceeEEecc-ceEEEEecCceeeecccccCC--------cccc-------Ccc
Confidence 0 0 011 123467 678888887666 689999877654433333332 1222 667
Q ss_pred eccCCCccccccCCCCCCcccCCCCCC---cEEeceeeccccccccccccccccccCccCeE--EEEECCCCCEEEEe-c
Q 010256 179 YMANGGCGERNFGCASNDSSFPPGGVS---SLRLPVVVTSQETNLVAGCRRIYAHAHDYHIN--SISNNSDGETFISA-D 252 (514)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~---~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~l~s~-~ 252 (514)
|+|.++.|.. .+...+. .+.+.. .+..+.++. ..--.|. .+-|-.+|.+|+.- +
T Consensus 354 wsP~~~llAY----------wtpe~~~~parvtL~e-------vPs~~~iRt---~nlfnVsDckLhWQk~gdyLcvkvd 413 (698)
T KOG2314|consen 354 WSPTSNLLAY----------WTPETNNIPARVTLME-------VPSKREIRT---KNLFNVSDCKLHWQKSGDYLCVKVD 413 (698)
T ss_pred cCCCcceEEE----------EcccccCCcceEEEEe-------cCccceeee---ccceeeeccEEEeccCCcEEEEEEE
Confidence 8888776611 0111000 111100 000111111 0111222 34566778888753 1
Q ss_pred ----C------CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec---CCeEEEEEcCCCcccc
Q 010256 253 ----D------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGSIRLIDMRQSALCD 319 (514)
Q Consensus 253 ----d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~---dg~i~~wd~~~~~~~~ 319 (514)
. ..+-|+.++.....+..+ .....|...+|-|.| +.|++-+. ..++.+|.+++.....
T Consensus 414 R~tK~~~~g~f~n~eIfrireKdIpve~v--------elke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~ 484 (698)
T KOG2314|consen 414 RHTKSKVKGQFSNLEIFRIREKDIPVEVV--------ELKESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKP 484 (698)
T ss_pred eeccccccceEeeEEEEEeeccCCCceee--------ecchheeeeeeccCC-CeEEEEEccccccceeEEEeecCCCch
Confidence 1 135566666444333322 246778999999999 55554332 3578889888543333
Q ss_pred ccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE---eC-CeEEEEEccCCCCceee-eeeccccccccccccc
Q 010256 320 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---DY-MTLKLWDINMDSGPVAT-FQVHEHLRPKLCDLYE 394 (514)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~---~~-~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~ 394 (514)
..++.++. ...+.+.|+|.|++++.+ +. |.+.++|+.. .....+ ...|..
T Consensus 485 ~lVk~~dk--------------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~-a~~k~~~~~eh~~---------- 539 (698)
T KOG2314|consen 485 SLVKELDK--------------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY-ADLKDTASPEHFA---------- 539 (698)
T ss_pred hhhhhhcc--------------cccceEEEcCCCcEEEEEEecccccceEEEecch-hhhhhccCccccc----------
Confidence 33444443 246889999999999975 33 8999999874 111111 111211
Q ss_pred cCCccceeeEEEcCCCCEEEEEeC------CCcEEEEecC
Q 010256 395 NDSIFDKFECCLSGDGGRVATGSY------SNLFRVFGCS 428 (514)
Q Consensus 395 ~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~ 428 (514)
.+.+-|.|.|+|+++++. |..-++|+..
T Consensus 540 ------at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 540 ------ATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred ------cccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 226899999999999875 3445666665
No 270
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.18 E-value=2.4e-07 Score=83.45 Aligned_cols=255 Identities=9% Similarity=0.013 Sum_probs=134.3
Q ss_pred CCCCcEEEEe-e---------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 123 SANSALYLLS-T---------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 123 ~~~~~~l~s~-~---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+++++.++++ + .+..|.+||..+.+....+.....+.... ...+..++++|||+.+
T Consensus 54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~--------~~~~~~~~ls~dgk~l------ 119 (352)
T TIGR02658 54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV--------GTYPWMTSLTPDNKTL------ 119 (352)
T ss_pred CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc--------cCccceEEECCCCCEE------
Confidence 6777777776 4 58999999999998887776653322110 0112267899999988
Q ss_pred CCCCcccCCC-C-CCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeee
Q 010256 193 ASNDSSFPPG-G-VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 193 ~~~~~~~~~~-~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~ 270 (514)
+... . +..+.+.| +....... .... .+...-...+ +...++-+.||......+.+.+... .
T Consensus 120 ------~V~n~~p~~~V~VvD-~~~~kvv~------ei~v--p~~~~vy~t~-e~~~~~~~~Dg~~~~v~~d~~g~~~-~ 182 (352)
T TIGR02658 120 ------LFYQFSPSPAVGVVD-LEGKAFVR------MMDV--PDCYHIFPTA-NDTFFMHCRDGSLAKVGYGTKGNPK-I 182 (352)
T ss_pred ------EEecCCCCCEEEEEE-CCCCcEEE------EEeC--CCCcEEEEec-CCccEEEeecCceEEEEecCCCceE-E
Confidence 5433 3 67888888 32222110 0000 0111111111 1112222233333333222222111 0
Q ss_pred eccCCCcccccCCce-EEEEEec-CCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 271 VDVKPANMEDLTEVI-TSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i-~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
... ..+.....++ ..-.|.+ ++ .++..... |.|.+.|+....... ...+......... -....+.+.-++
T Consensus 183 ~~~--~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~--~~~~~~~~~~~~~--~~wrP~g~q~ia 254 (352)
T TIGR02658 183 KPT--EVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKF--LPAIEAFTEAEKA--DGWRPGGWQQVA 254 (352)
T ss_pred eee--eeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCccee--cceeeeccccccc--cccCCCcceeEE
Confidence 000 0000000000 0014566 66 55555544 999999976543221 1111110000000 000113445599
Q ss_pred EecCCCEEEEEe---------C--CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC-EEEEE
Q 010256 349 FARNGRHILSRD---------Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATG 416 (514)
Q Consensus 349 ~s~~g~~l~~~~---------~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~ 416 (514)
++|+++.++... + +.|.++|..+ ++.+..+..... ...++++||++ +|++.
T Consensus 255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~vG~~----------------~~~iavS~Dgkp~lyvt 317 (352)
T TIGR02658 255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIELGHE----------------IDSINVSQDAKPLLYAL 317 (352)
T ss_pred EcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeCCCc----------------eeeEEECCCCCeEEEEe
Confidence 999998887731 1 5899999997 777777764332 23899999999 77766
Q ss_pred e-CCCcEEEEecCCCcee
Q 010256 417 S-YSNLFRVFGCSEGSAE 433 (514)
Q Consensus 417 ~-~dg~i~iwd~~~~~~~ 433 (514)
. .++.|.++|..+++..
T Consensus 318 n~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 318 STGDKTLYIFDAETGKEL 335 (352)
T ss_pred CCCCCcEEEEECcCCeEE
Confidence 5 6788999999987443
No 271
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.16 E-value=4.1e-10 Score=105.14 Aligned_cols=288 Identities=15% Similarity=0.236 Sum_probs=183.1
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
.-..++.++.++|.|+-+|.++.-| +.+-|+...-. | .+++..+..
T Consensus 22 ~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~------------------p-pr~l~h~tp-------------- 67 (1081)
T KOG0309|consen 22 KVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT------------------P-PRWLHHITP-------------- 67 (1081)
T ss_pred EecCcccceeeccccchhhhhhhcC-eEEEeccCCCC------------------C-ceeeeccCc--------------
Confidence 4457899999999999999998887 56667654321 0 112222221
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
-.|-.+.|+|.+...+-++......-.+|++...
T Consensus 68 w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s---------------------------------------------- 101 (1081)
T KOG0309|consen 68 WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS---------------------------------------------- 101 (1081)
T ss_pred chhcceecccCCCCceeEEecCcchhhhhhhhcC----------------------------------------------
Confidence 2377788988776666666655556667765421
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC-CEEEEe-cCCeEEEEeccCCCceeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
.+..|.+ ++.+|...|+++-|+|+. ..++++ -|-.+..||++.....+..
T Consensus 102 ----------s~~aIef------------------~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys 153 (1081)
T KOG0309|consen 102 ----------SSNAIEF------------------VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS 153 (1081)
T ss_pred ----------CccceEE------------------EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee
Confidence 1222222 247899999999999975 466777 8999999999987766543
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
. ..-......++|+-..++.+| .+..+.|++||++.+... ...+++|...|..++|.
T Consensus 154 ~-------~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~p---------------l~s~K~~vs~vn~~~fn 210 (1081)
T KOG0309|consen 154 T-------SSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTP---------------LCSLKGHVSSVNSIDFN 210 (1081)
T ss_pred e-------ecccccCceeeecccCcchhh-hccCCceEEEeccCCCcc---------------eEEecccceeeehHHHh
Confidence 2 223455678999877745554 566778999999987643 22345566788888887
Q ss_pred c--CCCEEEEEeCCeEEEEEccCCCCce-eeeeeccccccccccccccCCccceeeEEEcCCC--CEEE---------EE
Q 010256 351 R--NGRHILSRDYMTLKLWDINMDSGPV-ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG--GRVA---------TG 416 (514)
Q Consensus 351 ~--~g~~l~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~---------s~ 416 (514)
. .+..+-+..|++|+.||.....+.- .+....- .++.-++-|-| .+++ --
T Consensus 211 r~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~----------------piw~~r~~Pfg~g~~~mp~~G~n~v~~~ 274 (1081)
T KOG0309|consen 211 RFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNF----------------PIWRGRYLPFGEGYCIMPMVGGNMVPQL 274 (1081)
T ss_pred hhhhhhhcccCCCCceeeecccccccccceeccccC----------------cceeccccccCceeEeccccCCeeeeec
Confidence 5 2334444567999999987522111 1111110 11223333322 2222 11
Q ss_pred eCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCC----------ceeecCCCCeEEE
Q 010256 417 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP----------SRPLGSLSGVVRR 467 (514)
Q Consensus 417 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~l~s~s~d~~v~i 467 (514)
.-++....|+..++-....++.||.+.|....|...+. .|++=|.|.++|+
T Consensus 275 ~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrl 335 (1081)
T KOG0309|consen 275 RCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRL 335 (1081)
T ss_pred cccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEe
Confidence 22334445666666566689999999998877754322 6899999999999
No 272
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=2.8e-08 Score=94.12 Aligned_cols=204 Identities=12% Similarity=0.051 Sum_probs=112.1
Q ss_pred cceeEEEEeeCCCCcE--E-EEeeCC--CeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 113 EKINKIRWCQSANSAL--Y-LLSTND--KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~--l-~s~~~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
..+..-+|+ +||+. + +++..+ ..|.+.++.+++...+....... . ...|+|||+.+.
T Consensus 185 ~~~~sP~wS--PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~---------~-------~p~wSPDG~~La 246 (428)
T PRK01029 185 SLSITPTWM--HIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQ---------L-------MPTFSPRKKLLA 246 (428)
T ss_pred CCcccceEc--cCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCc---------c-------ceEECCCCCEEE
Confidence 345667894 56543 3 244333 45777788888766655544211 1 568999998872
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEe--ccC
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWN--LEI 263 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd--~~~ 263 (514)
.... ..+..+-.+.+|+ +... ......+. ...+.......+|+|||+.|+.. .+|...+|. +..
T Consensus 247 f~s~-------~~g~~di~~~~~~-~~~g---~~g~~~~l-t~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~ 314 (428)
T PRK01029 247 FISD-------RYGNPDLFIQSFS-LETG---AIGKPRRL-LNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDP 314 (428)
T ss_pred EEEC-------CCCCcceeEEEee-cccC---CCCcceEe-ecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcc
Confidence 1100 0011122223233 1111 01111111 12222334568999999988765 466555554 432
Q ss_pred CCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC---CeEEEEEcCCCccccccccceeccCCCCccceeecc
Q 010256 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (514)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (514)
...... .+......+....|+||| +.|+..+.+ ..|.+||+.+++.. .+.. .
T Consensus 315 ~g~~~~-------~lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~-----~Lt~------------~ 369 (428)
T PRK01029 315 EGQSPR-------LLTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRDY-----QLTT------------S 369 (428)
T ss_pred cccceE-------EeccCCCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCeE-----EccC------------C
Confidence 111111 222334456788999999 666655543 36899999887642 1110 1
Q ss_pred ccceeEEEEecCCCEEEE-Ee---CCeEEEEEccC
Q 010256 341 IASISDIKFARNGRHILS-RD---YMTLKLWDINM 371 (514)
Q Consensus 341 ~~~i~~~~~s~~g~~l~~-~~---~~~i~iwd~~~ 371 (514)
...+....|+|||+.|+. +. ...|.++|+..
T Consensus 370 ~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 370 PENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 124567899999998875 32 26788888874
No 273
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.15 E-value=3.3e-09 Score=88.37 Aligned_cols=223 Identities=10% Similarity=0.006 Sum_probs=136.4
Q ss_pred cCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCc
Q 010256 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 277 (514)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 277 (514)
+.....|.|.++. ....+........... .-......++.|++.+..++++ .+|.+.+-+....... +-+.
T Consensus 89 ~~a~a~G~i~~~r-~~~~~ss~~L~~ls~~-ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le------~vq~ 160 (339)
T KOG0280|consen 89 LDAHARGQIQLYR-NDEDESSVHLRGLSSK-KISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLE------KVQT 160 (339)
T ss_pred eeccccceEEEEe-eccceeeeeecccchh-hhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeee------eccc
Confidence 5566778888776 2222221111111100 0011134577889999999999 8999985544322111 1135
Q ss_pred ccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec-CCCEE
Q 010256 278 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHI 356 (514)
Q Consensus 278 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l 356 (514)
.+.|..++....|+...++++++|+.|+.+..||+|..+. ..|.. .+.|...|.++.-+| .+.++
T Consensus 161 wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-----~i~~n---------~kvH~~GV~SI~ss~~~~~~I 226 (339)
T KOG0280|consen 161 WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-----FIWHN---------SKVHTSGVVSIYSSPPKPTYI 226 (339)
T ss_pred ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-----eeeec---------ceeeecceEEEecCCCCCceE
Confidence 7789999999999988889999999999999999993221 11111 234668899998886 67799
Q ss_pred EEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC--CEEEEEeCCCcEEEEecCCCcee
Q 010256 357 LSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG--GRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 357 ~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
++|+. -.|++||.++-++++..-.... +|+.+.++|.- ++|+++-..| .+|-+.+.+...
T Consensus 227 ~TGsYDe~i~~~DtRnm~kPl~~~~v~G----------------GVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e 289 (339)
T KOG0280|consen 227 ATGSYDECIRVLDTRNMGKPLFKAKVGG----------------GVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLE 289 (339)
T ss_pred EEeccccceeeeehhcccCccccCcccc----------------ceEEEEecchhhhHHHHHHHhcC-ceEEEecccccc
Confidence 99986 8999999996577765443322 35678888743 3444444433 566665543222
Q ss_pred ----eeeecCCCcceeEEEECCCCCceeecC
Q 010256 434 ----STTLEASKNPMRRQVQTPSRPSRPLGS 460 (514)
Q Consensus 434 ----~~~~~~~~~~v~~~~~~~~~~~l~s~s 460 (514)
....+.|.+-.+.-.|..-..++|++|
T Consensus 290 ~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 290 FQIVLPSDKIHDSLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred hheeeeccccccceeeccccccccceeeeee
Confidence 123334544444444433335667765
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.14 E-value=9.7e-08 Score=85.93 Aligned_cols=254 Identities=10% Similarity=0.114 Sum_probs=141.0
Q ss_pred EcCCCCeEEEecC----------CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeecc-CCCcccccccccc
Q 010256 43 FDKSGDHLATGDR----------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYLKSLEI 111 (514)
Q Consensus 43 ~s~~g~~l~tg~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~ 111 (514)
+||||+.|+++.. +..|.+||..+.+...+ +.. -.|++. .
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~-----------------------i~~p~~p~~~------~ 103 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIAD-----------------------IELPEGPRFL------V 103 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeE-----------------------EccCCCchhh------c
Confidence 9999998887765 67899999998875421 110 000000 0
Q ss_pred ccceeEEEEeeCCCCcEEEEee-C-CCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 112 EEKINKIRWCQSANSALYLLST-N-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~-~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
...-..+++ +++|+++++.. . +..|.+.|+.+++.......... ..++.. ..-.......||..+.
T Consensus 104 ~~~~~~~~l--s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-------~~vy~t-~e~~~~~~~~Dg~~~~-- 171 (352)
T TIGR02658 104 GTYPWMTSL--TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-------YHIFPT-ANDTFFMHCRDGSLAK-- 171 (352)
T ss_pred cCccceEEE--CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-------cEEEEe-cCCccEEEeecCceEE--
Confidence 011334556 78888888764 3 79999999999988776655321 111100 0000122234444331
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeE-EEEECC-CCCEEEEecCCeEEEEeccCCCce
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHIN-SISNNS-DGETFISADDLRINLWNLEISNQS 267 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~-~~~~l~s~~d~~i~iwd~~~~~~~ 267 (514)
++-..+|....= ....+ .....++. .-.|.+ +|+++.....|+|.+.|+...+..
T Consensus 172 ---------v~~d~~g~~~~~-------------~~~vf-~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~ 228 (352)
T TIGR02658 172 ---------VGYGTKGNPKIK-------------PTEVF-HPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAK 228 (352)
T ss_pred ---------EEecCCCceEEe-------------eeeee-cCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcce
Confidence 112222221100 00000 11000000 003455 888888885599999997543221
Q ss_pred ----eeeeccCCCcccccCCceEEEEEecCCCcEEEE-Ee---------cCCeEEEEEcCCCccccccccceeccCCCCc
Q 010256 268 ----FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SS---------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (514)
Q Consensus 268 ----~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~-~~---------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 333 (514)
..++......-....+.+.-++++|++ +.++. .. ..+.|.++|..+++.. ..+...
T Consensus 229 ~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi----~~i~vG----- 298 (352)
T TIGR02658 229 FLPAIEAFTEAEKADGWRPGGWQQVAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL----RKIELG----- 298 (352)
T ss_pred ecceeeeccccccccccCCCcceeEEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCCCeEE----EEEeCC-----
Confidence 111111100001133445559999999 45554 32 2258999999988763 323322
Q ss_pred cceeeccccceeEEEEecCCC-EEEEEe--CCeEEEEEccCCCCceeee
Q 010256 334 RSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATF 379 (514)
Q Consensus 334 ~~~~~~~~~~i~~~~~s~~g~-~l~~~~--~~~i~iwd~~~~~~~~~~~ 379 (514)
..+..++++||++ +|++.. ++.|.++|..+ ++.+.++
T Consensus 299 --------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t-~k~i~~i 338 (352)
T TIGR02658 299 --------HEIDSINVSQDAKPLLYALSTGDKTLYIFDAET-GKELSSV 338 (352)
T ss_pred --------CceeeEEECCCCCeEEEEeCCCCCcEEEEECcC-CeEEeee
Confidence 3688999999999 777654 48899999997 7777776
No 275
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=2.8e-08 Score=93.76 Aligned_cols=406 Identities=11% Similarity=0.062 Sum_probs=195.9
Q ss_pred ccccceEEEEEcCC------C------CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCC
Q 010256 33 QEVDIISAIEFDKS------G------DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE 100 (514)
Q Consensus 33 ~h~~~V~~~~~s~~------g------~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 100 (514)
.|+..|+.+.|.|- + -+||+++..|.|.+||...+..+ ..++.|.
T Consensus 53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~-----------------------~~l~~~~ 109 (1062)
T KOG1912|consen 53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVI-----------------------NWLSHSN 109 (1062)
T ss_pred cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhh-----------------------hhhcCCC
Confidence 57899999999982 1 26888999999999998766532 3456666
Q ss_pred CccccccccccccceeEEEEeeCCCCc--EEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCcee
Q 010256 101 PEFDYLKSLEIEEKINKIRWCQSANSA--LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (514)
Q Consensus 101 ~~~~~~~~~~~~~~v~~i~~~~~~~~~--~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (514)
++|..++|.+..+.. .|++-....++.+|+..+|+........... .. ++.
T Consensus 110 ------------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i--------Ls-------~f~ 162 (1062)
T KOG1912|consen 110 ------------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI--------LS-------CFR 162 (1062)
T ss_pred ------------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcc--------ee-------eee
Confidence 889999998865543 5556677889999999998754333222110 00 111
Q ss_pred ecc-CCCccccccCCCC----CCcccCCCCCCcEEeceeecccccccccccccccc-ccCcc---------CeEEEEECC
Q 010256 179 YMA-NGGCGERNFGCAS----NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDY---------HINSISNNS 243 (514)
Q Consensus 179 ~~~-~~~~l~~~~~~~~----~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~h~~---------~v~~~~~~~ 243 (514)
+.| |.+.+.+ .+... .+++.....++..+.+. +.........-.+.... ..++. ....++|+|
T Consensus 163 ~DPfd~rh~~~-l~s~g~vl~~~~l~~sep~~pgk~~q-I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p 240 (1062)
T KOG1912|consen 163 VDPFDSRHFCV-LGSKGFVLSCKDLGLSEPDVPGKEFQ-ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP 240 (1062)
T ss_pred eCCCCcceEEE-EccCceEEEEeccCCCCCCCCceeEE-EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh
Confidence 222 1111100 00000 01111122223333333 11111000000000000 00000 012456788
Q ss_pred CCC-EEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCC-cEEEEEecCCeEEEEEcCCCcccccc
Q 010256 244 DGE-TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTH 321 (514)
Q Consensus 244 ~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~ 321 (514)
.-+ .+...--..+.++|++-.... ..+ .++ .+.+.=+.+-|+.. ..|++...||.+.+|-.+......+.
T Consensus 241 ~~rn~lfi~~prellv~dle~~~~l-~vv-----pie--r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~ 312 (1062)
T KOG1912|consen 241 HWRNILFITFPRELLVFDLEYECCL-AVV-----PIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKK 312 (1062)
T ss_pred hhhceEEEEeccceEEEcchhhcee-EEE-----Eec--cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccc
Confidence 744 444446778999999844333 222 222 33344455566542 57888999999999976542211000
Q ss_pred -ccc--eeccCCCCccceeecc-ccceeEEEEecCCCEEEE--EeCCeEEEEEccCCCCceeeeee-----------ccc
Q 010256 322 -SKL--FEEQEAPGTRSFFTEI-IASISDIKFARNGRHILS--RDYMTLKLWDINMDSGPVATFQV-----------HEH 384 (514)
Q Consensus 322 -~~~--~~~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~--~~~~~i~iwd~~~~~~~~~~~~~-----------~~~ 384 (514)
... ++..+ +...+... .-.+......|...-.++ -++|.+.+|.+.+ ++.-..... ...
T Consensus 313 ~~~~l~~dl~~---Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~-~ri~~~~~s~~iel~~pf~f~~~ 388 (1062)
T KOG1912|consen 313 PNASLSMDLGE---QVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSN-GRIHLDYRSSSIELVLPFDFNLS 388 (1062)
T ss_pred cchhhcccccc---ceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhc-CCcCcccccccccccccccccCc
Confidence 000 00000 00000000 001112222333222221 2446677777764 221100000 000
Q ss_pred --c--ccccccccccC-Cccceee-----------EEEcCCCC-------EEEEEeCCCcEEEEecCCCceeeeeecCCC
Q 010256 385 --L--RPKLCDLYEND-SIFDKFE-----------CCLSGDGG-------RVATGSYSNLFRVFGCSEGSAESTTLEASK 441 (514)
Q Consensus 385 --~--~~~~~~~~~~~-~~~~v~~-----------~~~s~~~~-------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 441 (514)
. ...+..+...+ .-.+.++ ..-.|.|+ ++|.|...|+|.++|+.++ .....+..|.
T Consensus 389 ~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~-~v~~~fsvht 467 (1062)
T KOG1912|consen 389 TKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN-AVAASFSVHT 467 (1062)
T ss_pred eeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecch-hhhhhhcccc
Confidence 0 00000000000 0000000 11112222 6788999999999999987 4457888999
Q ss_pred cceeEEEECCCCCceeecC-C----CCeEE----E--eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 442 NPMRRQVQTPSRPSRPLGS-L----SGVVR----R--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 442 ~~v~~~~~~~~~~~l~s~s-~----d~~v~----i--~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
..|..+.|.....++-.+- . .|.++ + +..+.-. .+.+..-.-...|+.+.-|..+.+|++.-
T Consensus 468 ~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk--~fR~l~~~despI~~irvS~~~~yLai~F 540 (1062)
T KOG1912|consen 468 SLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK--RFRGLQKPDESPIRAIRVSSSGRYLAILF 540 (1062)
T ss_pred cceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccc--ccccCCCCCcCcceeeeecccCceEEEEe
Confidence 9999999977665543221 1 11121 1 2222111 12222223478899999999999999765
No 276
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.08 E-value=3.6e-07 Score=95.75 Aligned_cols=227 Identities=9% Similarity=0.079 Sum_probs=131.6
Q ss_pred cCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCC--Ccccc-------cCCceEEEEEecCCCcEEEEEe
Q 010256 234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKP--ANMED-------LTEVITSAEFHPTHCNMLAYSS 302 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~-------~~~~i~~v~~~p~~~~~l~~~~ 302 (514)
.....++++++++.|..+ ..+.|+.+|+.++. ...+..... ....+ .-.....++++|++..++++.+
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 345788999988876666 56789999987432 211110000 00000 0123468999995437778888
Q ss_pred cCCeEEEEEcCCCccccccccceeccCCCCc---cceeeccccceeEEEEecCCCEEEEE-e-CCeEEEEEccCCCCcee
Q 010256 303 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGT---RSFFTEIIASISDIKFARNGRHILSR-D-YMTLKLWDINMDSGPVA 377 (514)
Q Consensus 303 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~s~~g~~l~~~-~-~~~i~iwd~~~~~~~~~ 377 (514)
.++.|++||..++... .+.+...... .............++++|+|+.|+.+ . +++|++||+.+ +...
T Consensus 703 ~~~~I~v~d~~~g~v~-----~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t-g~~~- 775 (1057)
T PLN02919 703 GQHQIWEYNISDGVTR-----VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT-GGSR- 775 (1057)
T ss_pred CCCeEEEEECCCCeEE-----EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC-CcEE-
Confidence 8999999999876531 1211100000 00000111346779999999866654 3 38999999986 3321
Q ss_pred eeeecccc-cccccccccc------CCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee------------ec
Q 010256 378 TFQVHEHL-RPKLCDLYEN------DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTT------------LE 438 (514)
Q Consensus 378 ~~~~~~~~-~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------~~ 438 (514)
.+.+.... ......+-.. .....-..++++++|+++++-..+++|++||..++...... ..
T Consensus 776 ~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~ 855 (1057)
T PLN02919 776 LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALK 855 (1057)
T ss_pred EEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccc
Confidence 11110000 0000000000 00001127899999998888889999999999866322111 11
Q ss_pred CCCcceeEEEECCCCCceeecCCCCeEEEe
Q 010256 439 ASKNPMRRQVQTPSRPSRPLGSLSGVVRRV 468 (514)
Q Consensus 439 ~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~ 468 (514)
+.......++++++|+++++-+.++.|+++
T Consensus 856 a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 856 AQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred cccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 122356789999999999999999999993
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.07 E-value=3.9e-07 Score=95.56 Aligned_cols=188 Identities=13% Similarity=0.142 Sum_probs=106.8
Q ss_pred eEEEEECCC-CCEEEEe-cCCeEEEEeccCCCceeeeec-cCCCccc------ccCCceEEEEEecCCCcEEEEEecCCe
Q 010256 236 INSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVD-VKPANME------DLTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 236 v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~-~~~~~~~------~~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
...++++|+ +.++++. .++.|++||..++... .+.. ....... ..-.....++++|++..++++-+.++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 357899994 5555555 7899999998754321 1100 0000000 112345789999998446666777899
Q ss_pred EEEEEcCCCccccc---------cccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCce
Q 010256 307 IRLIDMRQSALCDT---------HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPV 376 (514)
Q Consensus 307 i~~wd~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~ 376 (514)
|++||+.++..... ....+........ .........++++++|.++++-.. ++|++||..+ +. +
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~----~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~-v 837 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS----EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KR-V 837 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchh----hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-Ce-E
Confidence 99999987642100 0000000000000 001123468999999987777554 9999999875 33 3
Q ss_pred eeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCc
Q 010256 377 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 431 (514)
.++.+....... ..............++++++|+++++-+.++.|++||+.++.
T Consensus 838 ~tiaG~G~~G~~-dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 838 TTLAGTGKAGFK-DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEeccCCcCCC-CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 333221110000 000000111112379999999998888899999999998764
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.01 E-value=4.3e-09 Score=107.88 Aligned_cols=194 Identities=15% Similarity=0.237 Sum_probs=130.8
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
..+-..|.++.-+|...+.+||+.||.|++|....+..+ ..++.-.
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v-----------------------~~~rt~g----------- 2250 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV-----------------------VCFRTAG----------- 2250 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE-----------------------EEeeccC-----------
Confidence 345678899999999999999999999999998765532 2222111
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
...|+.+.| +..|..+..+..||.+.+|.+... .....+.+.. ....+.|.. ..+
T Consensus 2251 ~s~vtr~~f--~~qGnk~~i~d~dg~l~l~q~~pk---~~~s~qchnk-------------~~~Df~Fi~--s~~----- 2305 (2439)
T KOG1064|consen 2251 NSRVTRSRF--NHQGNKFGIVDGDGDLSLWQASPK---PYTSWQCHNK-------------ALSDFRFIG--SLL----- 2305 (2439)
T ss_pred cchhhhhhh--cccCCceeeeccCCceeecccCCc---ceeccccCCc-------------cccceeeee--hhh-----
Confidence 166899999 566778999999999999998732 1111111110 000222222 111
Q ss_pred CCCCCcccC---CCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce
Q 010256 192 CASNDSSFP---PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 192 ~~~~~~~~~---~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
++ ...++.+.+||.+..... ... -..|.+.++++++-|..+.|++| .+|.|++||++..+..
T Consensus 2306 -------~tag~s~d~~n~~lwDtl~~~~~----s~v---~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2306 -------ATAGRSSDNRNVCLWDTLLPPMN----SLV---HTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR 2371 (2439)
T ss_pred -------hccccCCCCCcccchhcccCccc----cee---eeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH
Confidence 32 235678999993222211 111 16899999999999999999999 9999999999844322
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcc
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~ 317 (514)
|.-+. ++ .. .+|++|+..|.++||++..-..
T Consensus 2372 -------------h~~~~----~~-~~-~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2372 -------------HTFQA----LD-TR-EYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred -------------HHhhh----hh-hh-heeeccCcccceEEEEccccch
Confidence 11111 34 33 7999999999999999987654
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.01 E-value=2.2e-07 Score=76.68 Aligned_cols=242 Identities=9% Similarity=0.002 Sum_probs=143.3
Q ss_pred cEEEEeeCCCeEEEEEcCccEEE-EEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCC
Q 010256 127 ALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (514)
Q Consensus 127 ~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (514)
.+|+.++..|...+|...+.+.. ........ +-.+ +...+....-+..++.|.
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn-------------------------~v~~-~~r~cd~~~~~~i~sndh 138 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNN-------------------------DVTL-VKRYCDLKFPLNIASNDH 138 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeeccccc-------------------------chhh-hhhhcccccceeeccCCc
Confidence 38889999999999998865422 22221110 0000 001111111225566777
Q ss_pred cEEeceeeccccccccccccccccccCccC--eEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccC
Q 010256 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYH--INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT 282 (514)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 282 (514)
++++.+ +..... . ...|... +.++++++|++++++. +...|..|.+......+.-+. .....
T Consensus 139 t~k~~~-~~~~s~---~------~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~-----~a~t~ 203 (344)
T KOG4532|consen 139 TGKTMV-VSGDSN---K------FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY-----EAPTS 203 (344)
T ss_pred ceeEEE-EecCcc---c------ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE-----ecccC
Confidence 777766 221111 0 0223333 7889999999999987 889999999986554433221 12223
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCC--EEEEE-
Q 010256 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR--HILSR- 359 (514)
Q Consensus 283 ~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~~~- 359 (514)
+.-.+..|+... ..+|++..||++.|||+|....... .+.. .-..|.+.++.+.|++-|. +|...
T Consensus 204 D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~tpm~----~~ss-------trp~hnGa~R~c~Fsl~g~lDLLf~sE 271 (344)
T KOG4532|consen 204 DHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMATPMA----EISS-------TRPHHNGAFRVCRFSLYGLLDLLFISE 271 (344)
T ss_pred CCceeeeeccCc-ceEEEEecCCcEEEEEecccccchh----hhcc-------cCCCCCCceEEEEecCCCcceEEEEec
Confidence 344678899887 8999999999999999998654321 1111 1234779999999998553 33334
Q ss_pred eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 360 DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 360 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
.-+.+.+-|+++ .+..+.+...+.... ......++..+|+.++.-+.+.+.+ .+.-|++.+.
T Consensus 272 hfs~~hv~D~R~-~~~~q~I~i~~d~~~-------~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 272 HFSRVHVVDTRN-YVNHQVIVIPDDVER-------KHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred CcceEEEEEccc-CceeeEEecCccccc-------cccccccccccccCCCcccccccch-hhheeecccc
Confidence 348999999997 555444433222100 0111124467788777766655543 4556666543
No 280
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.01 E-value=2.6e-08 Score=84.99 Aligned_cols=195 Identities=9% Similarity=0.038 Sum_probs=138.5
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
.+++++.+.++...|+.| +.|++.-+.+...-.... .++....|...+..+.|+-.. .++++.+.|..+.---.
T Consensus 69 ~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~----~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~ 143 (404)
T KOG1409|consen 69 SPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMT----FLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCT 143 (404)
T ss_pred CCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcc----hhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEee
Confidence 567889999999999999 999999887753211111 123456789999999998776 78999999988765555
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccC-CCCceeeeeeccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM-DSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~ 390 (514)
+.+..... +.+.. .-+++.+.-. +...|+. +.|.+-.+.. .-.++.++.+|...
T Consensus 144 e~~~~lg~--Y~~~~---------------~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~----- 199 (404)
T KOG1409|consen 144 ESGNRLGG--YNFET---------------PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE----- 199 (404)
T ss_pred ccCCcccc--eEeec---------------cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccc-----
Confidence 55543221 11111 1111222111 3334543 6665555442 13456677777655
Q ss_pred cccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+.+++|.+..+.|++|..|.++.+||+.-.......+.+|...|..+...+--+.+.+++.||.|.+
T Consensus 200 ----------~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~ 266 (404)
T KOG1409|consen 200 ----------VTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV 266 (404)
T ss_pred ----------eEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence 3499999999999999999999999998766666889999999999999888899999999999988
No 281
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=6.9e-09 Score=93.98 Aligned_cols=247 Identities=17% Similarity=0.177 Sum_probs=137.8
Q ss_pred ccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec
Q 010256 224 CRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS 303 (514)
Q Consensus 224 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~ 303 (514)
|..++ ..|+.+|.++.|-.+.++++++ ||-|.+||.-.+.......+. .-.+..+.|.++.- -+..-+++.++.
T Consensus 776 CQfTY-~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFigr~Laq~~da---pk~~a~~~ikcl~n-v~~~iliAgcsa 849 (1034)
T KOG4190|consen 776 CQFTY-QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIGRLLAQMEDA---PKEGAGGNIKCLEN-VDRHILIAGCSA 849 (1034)
T ss_pred eeeEh-hhccCcccceeeeeccceeeec-cCcceeecccccchhHhhhcC---cccCCCceeEeccc-Ccchheeeeccc
Confidence 33344 7899999999999998888766 466999998655443322110 11122233333321 123134444577
Q ss_pred CCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeec
Q 010256 304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVH 382 (514)
Q Consensus 304 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~ 382 (514)
..+++++|.+..... ..++.... .+..+.+.+++..+.|..++++ +.|.|.+.|.++ ++.+..+..-
T Consensus 850 eSTVKl~DaRsce~~----~E~kVcna-------~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~-G~vINswrpm 917 (1034)
T KOG4190|consen 850 ESTVKLFDARSCEWT----CELKVCNA-------PGPNALTRAIAVADKGNKLAAALSNGCIAILDARN-GKVINSWRPM 917 (1034)
T ss_pred hhhheeeecccccce----eeEEeccC-------CCCchheeEEEeccCcchhhHHhcCCcEEEEecCC-CceeccCCcc
Confidence 899999999987642 22332221 1223568999999999999998 559999999997 7766655432
Q ss_pred cccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEE-EecCCCceeeeeecCCCcceeEEEECCCCCceeecCC
Q 010256 383 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV-FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
+.. + ..++ .|..+.|+....|.++.+ |..-.+... ...+....+ +--...-|+-|+++..
T Consensus 918 ecd------l---------lqla-apsdq~L~~saldHslaVnWhaldgimh-~q~kpppep--ahflqsvgpSLV~a~~ 978 (1034)
T KOG4190|consen 918 ECD------L---------LQLA-APSDQALAQSALDHSLAVNWHALDGIMH-LQDKPPPEP--AHFLQSVGPSLVTAQN 978 (1034)
T ss_pred cch------h---------hhhc-CchhHHHHhhcccceeEeeehhcCCeee-eccCCCCcc--hhhhhccCceeEEecc
Confidence 211 0 0222 355667777778888888 877655221 122211111 1111223455566555
Q ss_pred CCeEEEe-eCCCCCccc-c-CCcccccccceEEEEEcCCCCEEEEEecC
Q 010256 462 SGVVRRV-KGADNSALD-A-NGNAFDFSMKLLHLAWHPSENSIACAASN 507 (514)
Q Consensus 462 d~~v~i~-~~~~~~~~~-~-~~~~~~~~~~v~~~~~spd~~~l~~~~~~ 507 (514)
...+.++ +........ + ....-++.+..++++--|-...+.+|.+.
T Consensus 979 Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~ 1027 (1034)
T KOG4190|consen 979 GNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEH 1027 (1034)
T ss_pred CcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCC
Confidence 5555551 111111000 0 01112345667777777765555555433
No 282
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.96 E-value=9.7e-07 Score=83.26 Aligned_cols=306 Identities=10% Similarity=0.084 Sum_probs=158.1
Q ss_pred CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCC
Q 010256 46 SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSAN 125 (514)
Q Consensus 46 ~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~ 125 (514)
.+..+++++.+|.|..+|..+++.. ....+.+ .+.. .|..+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~---------------------W~~~~~~---------------~~~~---~p~v~ 104 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRL---------------------WRVDLDE---------------RLSG---GVGAD 104 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEe---------------------eeecCCC---------------Cccc---ceEEc
Confidence 3668888889999999998888742 1111111 1110 11123
Q ss_pred CcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCC
Q 010256 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (514)
Q Consensus 126 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (514)
+..+++++.++.+..+|..+|+.......... +.. .... .+..+ +.+..++
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~---------~~~------~p~v--~~~~v------------~v~~~~g 155 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSE---------VLS------PPLV--ANGLV------------VVRTNDG 155 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCce---------eec------CCEE--ECCEE------------EEECCCC
Confidence 45788888999999999999987655443211 110 0011 12222 4556677
Q ss_pred cEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCc
Q 010256 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 284 (514)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 284 (514)
.+..+| ..+.+..-........ ...... ...... + ..++.+ .++.+..+|.++++.....-...+.. ......
T Consensus 156 ~l~a~d-~~tG~~~W~~~~~~~~-~~~~~~-~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g-~~~~~~ 229 (377)
T TIGR03300 156 RLTALD-AATGERLWTYSRVTPA-LTLRGS-ASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKG-RTELER 229 (377)
T ss_pred eEEEEE-cCCCceeeEEccCCCc-eeecCC-CCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCC-CCchhh
Confidence 788777 3222111000000000 000000 011111 2 356666 78999999998776543210000000 000000
Q ss_pred ---e-EEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-
Q 010256 285 ---I-TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR- 359 (514)
Q Consensus 285 ---i-~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~- 359 (514)
+ .+..+ .+ ..++.++.+|.+..||..+++..+.. +. ........ .+..++.+
T Consensus 230 ~~~~~~~p~~--~~-~~vy~~~~~g~l~a~d~~tG~~~W~~----~~--------------~~~~~p~~--~~~~vyv~~ 286 (377)
T TIGR03300 230 LVDVDGDPVV--DG-GQVYAVSYQGRVAALDLRSGRVLWKR----DA--------------SSYQGPAV--DDNRLYVTD 286 (377)
T ss_pred hhccCCccEE--EC-CEEEEEEcCCEEEEEECCCCcEEEee----cc--------------CCccCceE--eCCEEEEEC
Confidence 0 11112 23 46777888999999999998764321 10 01111222 34555554
Q ss_pred eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC
Q 010256 360 DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 439 (514)
Q Consensus 360 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 439 (514)
.+|.+..+|..+ ++.+-......... ..+... .+..|++++.+|.|+++|..+++.+ ..++.
T Consensus 287 ~~G~l~~~d~~t-G~~~W~~~~~~~~~--------------~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~-~~~~~ 348 (377)
T TIGR03300 287 ADGVVVALDRRS-GSELWKNDELKYRQ--------------LTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV-ARLKT 348 (377)
T ss_pred CCCeEEEEECCC-CcEEEccccccCCc--------------cccCEE--ECCEEEEEeCCCEEEEEECCCCCEE-EEEEc
Confidence 459999999987 66554332111000 002222 4668889999999999999988443 45554
Q ss_pred CCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 440 SKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 440 ~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+...+...-...++ .|..++.||.+..
T Consensus 349 ~~~~~~~sp~~~~~-~l~v~~~dG~l~~ 375 (377)
T TIGR03300 349 DGSGIASPPVVVGD-GLLVQTRDGDLYA 375 (377)
T ss_pred CCCccccCCEEECC-EEEEEeCCceEEE
Confidence 44332222122233 4667777887654
No 283
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=2.1e-07 Score=87.64 Aligned_cols=180 Identities=11% Similarity=0.044 Sum_probs=109.8
Q ss_pred CeEEEEECCCCCE-EEE-e-c--CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC--CeE
Q 010256 235 HINSISNNSDGET-FIS-A-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSI 307 (514)
Q Consensus 235 ~v~~~~~~~~~~~-l~s-~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d--g~i 307 (514)
......|+|||+. ++. . . +..|.++|+.+++.. . +....+......|+|||..++++.+.+ ..|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-~--------lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-K--------IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-E--------EecCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 6678999999984 553 3 3 467889999765432 2 122344556778999995455555544 467
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC----CeEEEEEccCCCCceeeeeecc
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVHE 383 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~----~~i~iwd~~~~~~~~~~~~~~~ 383 (514)
.++|+.++... .+ +.+........|+|||+.|+-.++ ..|.+.|+.. ++. ..+....
T Consensus 260 y~~dl~~g~~~-----~L------------T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~-~rlt~~g 320 (419)
T PRK04043 260 YLYDTNTKTLT-----QI------------TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSV-EQVVFHG 320 (419)
T ss_pred EEEECCCCcEE-----Ec------------ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCe-EeCccCC
Confidence 77787766431 11 111112234579999998886543 3677777764 333 2222111
Q ss_pred ccccccccccccCCccceeeEEEcCCCCEEEEEeCC---------CcEEEEecCCCceeeeeecCCCcceeEEEECCCCC
Q 010256 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 454 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 454 (514)
.. ...|+|||++|+..+.. ..|++.|+.++... .+... .......|+|||+
T Consensus 321 ~~-----------------~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~--~LT~~-~~~~~p~~SPDG~ 380 (419)
T PRK04043 321 KN-----------------NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR--RLTAN-GVNQFPRFSSDGG 380 (419)
T ss_pred Cc-----------------CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE--ECCCC-CCcCCeEECCCCC
Confidence 00 24799999998866543 36888898877443 23322 2233578999999
Q ss_pred ceeecCCC
Q 010256 455 SRPLGSLS 462 (514)
Q Consensus 455 ~l~s~s~d 462 (514)
.|+..+.+
T Consensus 381 ~I~f~~~~ 388 (419)
T PRK04043 381 SIMFIKYL 388 (419)
T ss_pred EEEEEEcc
Confidence 88776543
No 284
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.95 E-value=2.4e-07 Score=76.53 Aligned_cols=231 Identities=9% Similarity=-0.036 Sum_probs=140.9
Q ss_pred CCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccc
Q 010256 245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 323 (514)
Q Consensus 245 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 323 (514)
--+|+.| ..|...+|...+.+....+.+ .+...|+-+.=..+....+..++.|.++++.++.-+...
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd-------~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~----- 151 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCD-------VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK----- 151 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeec-------ccccchhhhhhhcccccceeeccCCcceeEEEEecCccc-----
Confidence 3467777 899999999986655443322 122222211111122134666788888888888765431
Q ss_pred ceeccCCCCccceeecccc--ceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccc
Q 010256 324 LFEEQEAPGTRSFFTEIIA--SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 400 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
+..|.. .+.++++++|++++++-+| ..|..|.+..++.-+......... +.-
T Consensus 152 -------------~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~----------D~g-- 206 (344)
T KOG4532|consen 152 -------------FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS----------DHG-- 206 (344)
T ss_pred -------------ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC----------CCc--
Confidence 111111 3788999999999999666 899999998644433332211111 222
Q ss_pred eeeEEEcCCCCEEEEEeCCCcEEEEecCCCceee----eeecCCCcceeEEEECCCCC--ceeecCCCCeEEEeeCCCCC
Q 010256 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES----TTLEASKNPMRRQVQTPSRP--SRPLGSLSGVVRRVKGADNS 474 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~v~i~~~~~~~ 474 (514)
++..|+.....+|++..||.+.|||++...... .+-..|.++++.+.|++.|. +|...-.-+.+.+.+.....
T Consensus 207 -F~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 207 -FYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred -eeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 278999999999999999999999998754332 23346889999999998665 34443344555554333333
Q ss_pred ccccCCc----cccccc-ceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 475 ALDANGN----AFDFSM-KLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 475 ~~~~~~~----~~~~~~-~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
..+.... ...|.. .|..-.|+.++..+-+.++..++-|+
T Consensus 286 ~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~n 329 (344)
T KOG4532|consen 286 NHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYN 329 (344)
T ss_pred eeeEEecCccccccccccccccccccCCCcccccccchhhheee
Confidence 2221111 112333 37777788877777766666555543
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=5.2e-07 Score=84.98 Aligned_cols=177 Identities=9% Similarity=0.027 Sum_probs=107.0
Q ss_pred ceEEEEEecCCCcEEEEEecC---CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-
Q 010256 284 VITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR- 359 (514)
Q Consensus 284 ~i~~v~~~p~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~- 359 (514)
......|+|+|...++..+.+ ..|.++|+.+++.. .+ ....+......|+|||+.++..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-----~l------------t~~~g~~~~~~~SPDG~~la~~~ 251 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-----KI------------ASSQGMLVVSDVSKDGSKLLLTM 251 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-----EE------------ecCCCcEEeeEECCCCCEEEEEE
Confidence 677899999994345544443 46888899877631 11 1111345667899999887753
Q ss_pred e---CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC-CC--cEEEEecCCCcee
Q 010256 360 D---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN--LFRVFGCSEGSAE 433 (514)
Q Consensus 360 ~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~ 433 (514)
+ +..|.++|+.. +. ...+..+.... ....|+|||+.|+..+. .+ .|++.|+.+++..
T Consensus 252 ~~~g~~~Iy~~dl~~-g~-~~~LT~~~~~d---------------~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~ 314 (419)
T PRK04043 252 APKGQPDIYLYDTNT-KT-LTQITNYPGID---------------VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE 314 (419)
T ss_pred ccCCCcEEEEEECCC-Cc-EEEcccCCCcc---------------CccEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 2 26788888764 33 44443332211 14689999998776553 23 6888888877543
Q ss_pred eeeecCCCcceeEEEECCCCCceeecCCCC---------eEEEe--eCCCCCccccCCcccccccceEEEEEcCCCCEEE
Q 010256 434 STTLEASKNPMRRQVQTPSRPSRPLGSLSG---------VVRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSENSIA 502 (514)
Q Consensus 434 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~---------~v~i~--~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 502 (514)
..+..+.. ...|+|+|++|+..+... .+.++ ++.... .+.. ........|+|||+.|+
T Consensus 315 rlt~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~--~LT~-----~~~~~~p~~SPDG~~I~ 383 (419)
T PRK04043 315 QVVFHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR--RLTA-----NGVNQFPRFSSDGGSIM 383 (419)
T ss_pred eCccCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE--ECCC-----CCCcCCeEECCCCCEEE
Confidence 33333221 248999999887776542 34443 233222 1111 12233689999999998
Q ss_pred EEe
Q 010256 503 CAA 505 (514)
Q Consensus 503 ~~~ 505 (514)
..+
T Consensus 384 f~~ 386 (419)
T PRK04043 384 FIK 386 (419)
T ss_pred EEE
Confidence 655
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=1.3e-08 Score=92.28 Aligned_cols=294 Identities=15% Similarity=0.184 Sum_probs=171.2
Q ss_pred cccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
.+.+|+..|..++--.+.+-+++++.|.+|++|.+...... . ......-+++.|.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~---------~-------~tsaCQfTY~aHk--------- 784 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE---------I-------GTSACQFTYQAHK--------- 784 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc---------c-------ccceeeeEhhhcc---------
Confidence 46799999999988888889999999999999998644321 0 0111334567787
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
.+|.++.|. .+-+ ..++.||.|.+||.--+....... +.|.
T Consensus 785 ---k~i~~igfL--~~lr--~i~ScD~giHlWDPFigr~Laq~~-------------------------dapk------- 825 (1034)
T KOG4190|consen 785 ---KPIHDIGFL--ADLR--SIASCDGGIHLWDPFIGRLLAQME-------------------------DAPK------- 825 (1034)
T ss_pred ---Ccccceeee--eccc--eeeeccCcceeecccccchhHhhh-------------------------cCcc-------
Confidence 889999995 3322 345678999999976654321100 0000
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCce
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS 267 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~ 267 (514)
.+..+.|.++. +-+...++.+ ...+|+++|.+..+-.
T Consensus 826 ----------------------------------------~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~ 864 (1034)
T KOG4190|consen 826 ----------------------------------------EGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWT 864 (1034)
T ss_pred ----------------------------------------cCCCceeEecc-cCcchheeeeccchhhheeeecccccce
Confidence 11112233321 1234444444 6889999999866543
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
.++. .-+-.+.+..+++++..|.| +.++.+-.+|.|.+.|.++|+.+ ..|..-+ .....+
T Consensus 865 ~E~k---Vcna~~Pna~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~vI----Nswrpme------------cdllql 924 (1034)
T KOG4190|consen 865 CELK---VCNAPGPNALTRAIAVADKG-NKLAAALSNGCIAILDARNGKVI----NSWRPME------------CDLLQL 924 (1034)
T ss_pred eeEE---eccCCCCchheeEEEeccCc-chhhHHhcCCcEEEEecCCCcee----ccCCccc------------chhhhh
Confidence 3321 11223456778999999999 89999999999999999999863 2222211 112222
Q ss_pred EEecCCCEEEE-EeCCeEEE-EEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEE
Q 010256 348 KFARNGRHILS-RDYMTLKL-WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (514)
Q Consensus 348 ~~s~~g~~l~~-~~~~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (514)
+ .|..+.++. +.+.++.+ |.... +......+....+. --...-|.-|+++...+.+.+|
T Consensus 925 a-apsdq~L~~saldHslaVnWhald-gimh~q~kpppepa-----------------hflqsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 925 A-APSDQALAQSALDHSLAVNWHALD-GIMHLQDKPPPEPA-----------------HFLQSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred c-CchhHHHHhhcccceeEeeehhcC-CeeeeccCCCCcch-----------------hhhhccCceeEEeccCcEEEEE
Confidence 2 244556654 45677777 76543 33222222111110 0011124456666666677777
Q ss_pred ecCCCcee---eeeec--CCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 426 GCSEGSAE---STTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 426 d~~~~~~~---~~~~~--~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.-...... ...++ ...+..++++..|-..-.+.|++.|.|++
T Consensus 986 ad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 986 ADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred ecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 43211000 01111 23345667777777777777777777765
No 287
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.91 E-value=2.7e-08 Score=102.33 Aligned_cols=185 Identities=12% Similarity=0.163 Sum_probs=136.3
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
..+-..|.++.-+|...+.++| .||.+++|....+++.... . ......++.+.|+.+| +.+..+..||.+.
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~------r-t~g~s~vtr~~f~~qG-nk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCF------R-TAGNSRVTRSRFNHQG-NKFGIVDGDGDLS 2276 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEe------e-ccCcchhhhhhhcccC-CceeeeccCCcee
Confidence 3445678888889999999999 9999999999866665432 1 2234889999999999 8999999999999
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE---eC-CeEEEEEccCCCCceeeeeeccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---DY-MTLKLWDINMDSGPVATFQVHEH 384 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~---~~-~~i~iwd~~~~~~~~~~~~~~~~ 384 (514)
+|...... ...++. |.....++.|-. ..++++ +| +.+.+||...+...-..-..|.+
T Consensus 2277 l~q~~pk~-----~~s~qc------------hnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ 2337 (2439)
T KOG1064|consen 2277 LWQASPKP-----YTSWQC------------HNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG 2337 (2439)
T ss_pred ecccCCcc-----eecccc------------CCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCC
Confidence 99987211 333333 334566677764 566653 34 89999997654333333366665
Q ss_pred cccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCe
Q 010256 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~ 464 (514)
. ++++++-|..++|++|+.+|.|++||++.. ++.++++. +. ...++++|+..|.
T Consensus 2338 g---------------aT~l~~~P~~qllisggr~G~v~l~D~rqr-ql~h~~~~---------~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2338 G---------------ATVLAYAPKHQLLISGGRKGEVCLFDIRQR-QLRHTFQA---------LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred C---------------ceEEEEcCcceEEEecCCcCcEEEeehHHH-HHHHHhhh---------hh-hhheeeccCcccc
Confidence 4 348999999999999999999999999854 33333332 33 6678999999999
Q ss_pred EEE
Q 010256 465 VRR 467 (514)
Q Consensus 465 v~i 467 (514)
++|
T Consensus 2392 ikI 2394 (2439)
T KOG1064|consen 2392 IKI 2394 (2439)
T ss_pred eEE
Confidence 999
No 288
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.90 E-value=1.4e-06 Score=73.24 Aligned_cols=186 Identities=17% Similarity=0.212 Sum_probs=111.3
Q ss_pred cCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCc-c-cccCCceEEEEEecCC-----CcEEEEEe
Q 010256 231 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN-M-EDLTEVITSAEFHPTH-----CNMLAYSS 302 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~-~-~~~~~~i~~v~~~p~~-----~~~l~~~~ 302 (514)
.....-+.++|+||+..||.+ ..|+|++||+. +...+.+ +|.. + ......|..+.|.+.. ...|++-.
T Consensus 41 D~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~-g~~lf~I---~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~ 116 (282)
T PF15492_consen 41 DPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLM-GSELFVI---PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN 116 (282)
T ss_pred CCCchheEEEECCCCcEEEEEcCCCeEEEEecc-cceeEEc---CcccccCCccccceeeeEeeccccccccceeEEEEe
Confidence 334456789999999999999 99999999997 3444332 2211 1 1234567777775432 13566667
Q ss_pred cCCeEEEEEcCCCccc-cccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC---C---------eEEEEEc
Q 010256 303 SKGSIRLIDMRQSALC-DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---M---------TLKLWDI 369 (514)
Q Consensus 303 ~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---~---------~i~iwd~ 369 (514)
.+|.++-|-+..+... .+....|. +...+...|.++.++|..++|+.|+. . -+..|.+
T Consensus 117 Y~G~L~Sy~vs~gt~q~y~e~hsfs---------f~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRi 187 (282)
T PF15492_consen 117 YRGQLRSYLVSVGTNQGYQENHSFS---------FSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRI 187 (282)
T ss_pred ccceeeeEEEEcccCCcceeeEEEE---------ecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEE
Confidence 7888877776433210 00011111 11123468999999999888887531 1 4667777
Q ss_pred cCCCCceeeeee-c-cccc--c---cc---cc--ccc--cCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 370 NMDSGPVATFQV-H-EHLR--P---KL---CD--LYE--NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 370 ~~~~~~~~~~~~-~-~~~~--~---~~---~~--~~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
-. +.+-..... . +... . .+ .. ++. ....-.|+.+..||||++||+...+|.|.+|++.+-
T Consensus 188 L~-~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 188 LS-DSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred cC-CCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 65 333222111 1 1100 0 00 00 110 111224568999999999999999999999999875
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.89 E-value=1.8e-08 Score=94.44 Aligned_cols=184 Identities=17% Similarity=0.237 Sum_probs=129.9
Q ss_pred CeEEEEECCCC---CEEEEecCCeEEEEeccCCC-ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEE
Q 010256 235 HINSISNNSDG---ETFISADDLRINLWNLEISN-QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 310 (514)
Q Consensus 235 ~v~~~~~~~~~---~~l~s~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~w 310 (514)
.|-.+.|+|.. ..+++-....-.+|++.... ..+++ .+.+|...|+.+-|+|+.+..+++++.|-.+..|
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef------~lhghsraitd~n~~~q~pdVlatcsvdt~vh~w 142 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF------VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAW 142 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEE------EEecCccceeccccCCCCCcceeeccccccceee
Confidence 45567787752 33444466677789886432 22332 4678999999999999998999999999999999
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEec-CCCEEEEEeCCeEEEEEccCCCCceeeeeecccccccc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKL 389 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (514)
|+++.... ++.+..-. ..-..|+|+- ++..+|+.....|++||++.++.++..+++|...+.
T Consensus 143 d~rSp~~p---~ys~~~w~------------s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn-- 205 (1081)
T KOG0309|consen 143 DMRSPHRP---FYSTSSWR------------SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVN-- 205 (1081)
T ss_pred eccCCCcc---eeeeeccc------------ccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeee--
Confidence 99985432 33333221 3567788986 555666655688999999998889999988654322
Q ss_pred ccccccCCccceeeEEEcCC-CCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCC
Q 010256 390 CDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 454 (514)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 454 (514)
.++|..- ...+.+.+.|++|++||................+++.-.+.|-|.
T Consensus 206 -------------~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 206 -------------SIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred -------------hHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence 5555432 235778999999999998765444444555567777777777554
No 290
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.9e-07 Score=82.82 Aligned_cols=327 Identities=14% Similarity=0.164 Sum_probs=194.1
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
.-|.+.|+.+.-+. .+++.+++.||.++.|.-..-. ...++..+..|.
T Consensus 6 ymhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~is--------------------GvEfVKhFraHL----------- 53 (558)
T KOG0882|consen 6 YMHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRIS--------------------GVEFVKHFRAHL----------- 53 (558)
T ss_pred hcccceeeeEeeeh-hheEEeeecchhhhhcCCCCcc--------------------ceeehhhhHHHH-----------
Confidence 35888888887664 4699999999999999854211 112555677776
Q ss_pred ccceeEEEEeeCCCCcEEEEeeC-CCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeec-cCCCccccc
Q 010256 112 EEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM-ANGGCGERN 189 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~l~~~ 189 (514)
..|.+++. +.++.++.+.+. |..++++|+++-.......+...|. ...|. ..|..+
T Consensus 54 -~~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg----------------~a~wv~skGd~~--- 111 (558)
T KOG0882|consen 54 -GVILSLAV--SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG----------------FAEWVTSKGDKI--- 111 (558)
T ss_pred -HHHHhhhc--cccceeEeeccCcccceeEEEeeccchhhhcccccCCC----------------ceEEecCCCCee---
Confidence 66777777 567778888777 9999999999876555444443331 11111 111000
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCC-Cce
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS-NQS 267 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~-~~~ 267 (514)
..+.++.-.++.+.++| -.. + ..+...+..-|..+|..+.+++.+..+++. ..|.|..|..+.. +..
T Consensus 112 -----s~IAVs~~~sg~i~VvD-~~~-d----~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfP 180 (558)
T KOG0882|consen 112 -----SLIAVSLFKSGKIFVVD-GFG-D----FCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFP 180 (558)
T ss_pred -----eeEEeecccCCCcEEEC-CcC-C----cCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCc
Confidence 11124445667777777 111 0 111122235688999999999999999999 7999999998731 111
Q ss_pred eee--eccCC----CcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceec-cCCCCc-------
Q 010256 268 FNI--VDVKP----ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE-QEAPGT------- 333 (514)
Q Consensus 268 ~~~--~~~~~----~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-~~~~~~------- 333 (514)
..- +..+. ..+........++.|+|++ ..+.+-+.|..|++++++++++....-.+... +..+..
T Consensus 181 r~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~V 259 (558)
T KOG0882|consen 181 RTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHV 259 (558)
T ss_pred cccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccccee
Confidence 000 11111 0112234667899999999 89999999999999999999864221111000 000000
Q ss_pred --------cceeeccc-cceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCC-------
Q 010256 334 --------RSFFTEII-ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDS------- 397 (514)
Q Consensus 334 --------~~~~~~~~-~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 397 (514)
.+.+..|. ..-+.+.|...|++|+-|+-=-|++.++.+ +...+.+-..+...-.-..+|....
T Consensus 260 elgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~ 338 (558)
T KOG0882|consen 260 ELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT-NTVVRILGKDEAIRFTRLSLYQGAQKSNLAAL 338 (558)
T ss_pred ehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeec-CeEEEEeccchhhhhhhHHHHhhhhhccchhh
Confidence 00111122 234567788899999998875689999887 5555444322211100000110000
Q ss_pred --cc-ceeeEEEcCCCCEEEEEeCCCcEEEE
Q 010256 398 --IF-DKFECCLSGDGGRVATGSYSNLFRVF 425 (514)
Q Consensus 398 --~~-~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (514)
.. .--.+.+.+|..+++++-..+++++|
T Consensus 339 ~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 339 EVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred hhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 00 00023466777788888788888888
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.85 E-value=6.4e-08 Score=84.51 Aligned_cols=159 Identities=11% Similarity=0.146 Sum_probs=98.8
Q ss_pred eEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCe---EEEEE
Q 010256 236 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS---IRLID 311 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~---i~~wd 311 (514)
...+..++.++++|.+ .+....+++.....+..+.++. .......+++.|..+. .....+..-|. +.+|.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~-----~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV-----SCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeE-----eecccCcceeeeeecc-ceEEEEeecCCceeeeeec
Confidence 3455677888899988 7777767777644432222111 1112223344444333 23333333333 33333
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
...+. .....+|.+-++.++|+||+++|++++. ..|+|-........-.-..+|.+.+.
T Consensus 139 ~~~~~-----------------~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS--- 198 (390)
T KOG3914|consen 139 ADSGR-----------------CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVS--- 198 (390)
T ss_pred ccccC-----------------cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhee---
Confidence 33221 1225678899999999999999999975 99999877652222333456877654
Q ss_pred cccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
.++.- ++..|+++|.|++|++||+.+++.+
T Consensus 199 ------------~isl~-~~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 199 ------------TISLT-DNYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred ------------eeeec-cCceeeecCCCCcEEEEecccCCcc
Confidence 56665 4556899999999999999998665
No 292
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.76 E-value=1.8e-05 Score=66.72 Aligned_cols=229 Identities=16% Similarity=0.170 Sum_probs=122.2
Q ss_pred EEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccc
Q 010256 239 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 318 (514)
Q Consensus 239 ~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~ 318 (514)
++.+.+|+.||.-.|..|.|=..+..-... ..+..........-+.++|+||+ .+||.+...|+|++||+....+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si---~~kcqVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~l- 77 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSI---IGKCQVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSEL- 77 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchhe---eEEEecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEeccccee-
Confidence 567789999988888888887665332111 01111112233446799999999 8999999999999999976442
Q ss_pred cccccceeccCCCCccceeeccccceeEEEEecC-------CCEEEEEeCCeEEEEEccC----CCCceeeeeecccccc
Q 010256 319 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-------GRHILSRDYMTLKLWDINM----DSGPVATFQVHEHLRP 387 (514)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-------g~~l~~~~~~~i~iwd~~~----~~~~~~~~~~~~~~~~ 387 (514)
..+..... ....-...|..+.|-+- -++|+..-.|.++=|-+.. ..+...++......
T Consensus 78 ----f~I~p~~~-----~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~y-- 146 (282)
T PF15492_consen 78 ----FVIPPAMS-----FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHY-- 146 (282)
T ss_pred ----EEcCcccc-----cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccC--
Confidence 22221110 01112356777777542 1344444446666665432 12223333322211
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCc-----------EEEEecCCCceeeeeecCCCcceeEEEECCCCCce
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL-----------FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR 456 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-----------i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 456 (514)
..+|.++.++|..++|+.|+.... +.-|.+-++. |..+.
T Consensus 147 ----------p~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~-------------------Pyyk~- 196 (282)
T PF15492_consen 147 ----------PHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS-------------------PYYKQ- 196 (282)
T ss_pred ----------CCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCC-------------------CcEEE-
Confidence 123558999999998887764321 2223322221 11111
Q ss_pred eecCCCCeEEEeeCCC---CCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 457 PLGSLSGVVRRVKGAD---NSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 457 ~s~s~d~~v~i~~~~~---~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
++..+|......+... .....+..........|..|..||||+.||+.. ++.+.+|.
T Consensus 197 v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 197 VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 1122222110100000 000000001112478899999999999999776 77888885
No 293
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.75 E-value=4.5e-07 Score=74.61 Aligned_cols=143 Identities=17% Similarity=0.177 Sum_probs=88.5
Q ss_pred cCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecC------CeEEEEeccCCCceeeeec
Q 010256 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADD------LRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d------~~i~iwd~~~~~~~~~~~~ 272 (514)
+++..||.+.+.+ .+. ..+..+.....|.+ -.+.+....++.+.++.- +..+.|+++..+...
T Consensus 105 ~~~~~dg~~~v~s----~~~--~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~---- 173 (319)
T KOG4714|consen 105 CIGYADGSLAVFS----TDK--DLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI---- 173 (319)
T ss_pred EecCCCceEEEEe----chH--HHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccc----
Confidence 7788889888776 111 11111111111211 123334445666666433 344556655222111
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec-
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR- 351 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~- 351 (514)
+... ....|.+++-+|...+++++|+.||.+.+||.++.... ...+..|+.+|..+.|+|
T Consensus 174 --~~~~--~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p---------------~S~l~ahk~~i~eV~FHpk 234 (319)
T KOG4714|consen 174 --PSKK--ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP---------------VSLLKAHKAEIWEVHFHPK 234 (319)
T ss_pred --cccc--ccccchhhhCCcccccEEEEecCCCeEEEEEcccccch---------------HHHHHHhhhhhhheeccCC
Confidence 1111 12338999999988788999999999999999987542 233566778999999999
Q ss_pred CCCEEEEEe-CCeEEEEEccC
Q 010256 352 NGRHILSRD-YMTLKLWDINM 371 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~ 371 (514)
++..|++++ ||.+.-||..+
T Consensus 235 ~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 235 NPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CchheeEecCCCcEEEEcCCC
Confidence 566777765 59999999873
No 294
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.73 E-value=5.1e-05 Score=66.75 Aligned_cols=145 Identities=11% Similarity=0.137 Sum_probs=88.2
Q ss_pred cCeEEEEECCCCCEEEEe-cC--------CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC
Q 010256 234 YHINSISNNSDGETFISA-DD--------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK 304 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d 304 (514)
...++++++|+|++.++. .. |.|..++.. ++ .... ...-.....++|+|++..++++-+..
T Consensus 86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~--------~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVV--------ADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEE--------EEEESSEEEEEEETTSSEEEEEETTT
T ss_pred CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEE--------ecCcccccceEECCcchheeeccccc
Confidence 456789999999977764 22 557667765 22 2211 11245578999999994455567778
Q ss_pred CeEEEEEcCCCccccccccce-eccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeec
Q 010256 305 GSIRLIDMRQSALCDTHSKLF-EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH 382 (514)
Q Consensus 305 g~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~ 382 (514)
+.|..|++..........+.+ +... ..+..-.+++..+|++.++.-. +.|.++|.+ ++.+..+...
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~----------~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~--G~~~~~i~~p 223 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPG----------GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD--GKLLREIELP 223 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SS----------SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT--SCEEEEEE-S
T ss_pred ceeEEEeccccccceeeeeeEEEcCC----------CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC--ccEEEEEcCC
Confidence 899999986433211111112 1111 1134778999999998887644 899999987 7777777665
Q ss_pred cccccccccccccCCccceeeEEEc-CCCCEEEE
Q 010256 383 EHLRPKLCDLYENDSIFDKFECCLS-GDGGRVAT 415 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s 415 (514)
... .++++|. ++.+.|+.
T Consensus 224 ~~~---------------~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 224 VPR---------------PTNCAFGGPDGKTLYV 242 (246)
T ss_dssp SSS---------------EEEEEEESTTSSEEEE
T ss_pred CCC---------------EEEEEEECCCCCEEEE
Confidence 322 3488994 56565543
No 295
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.71 E-value=1.2e-05 Score=75.90 Aligned_cols=267 Identities=10% Similarity=0.047 Sum_probs=137.3
Q ss_pred CcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCC
Q 010256 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (514)
Q Consensus 126 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (514)
+..+++++.++.+..+|..+|+............ + .+ ..++..+ +.++.++
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~-----~----------~p--~v~~~~v------------~v~~~~g 115 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLS-----G----------GV--GADGGLV------------FVGTEKG 115 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc-----c----------ce--EEcCCEE------------EEEcCCC
Confidence 4478888899999999999998766555442110 0 11 1123333 5666777
Q ss_pred cEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCc
Q 010256 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 284 (514)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 284 (514)
.+..+| ..+.+. +... .-.+.+.+.-.- .+..++.+ .++.+..||.++++...+.....+ ... ....
T Consensus 116 ~l~ald-~~tG~~------~W~~--~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-~~~-~~~~ 183 (377)
T TIGR03300 116 EVIALD-AEDGKE------LWRA--KLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTP-ALT-LRGS 183 (377)
T ss_pred EEEEEE-CCCCcE------eeee--ccCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCC-cee-ecCC
Confidence 777776 222111 1111 001111111011 23455555 899999999987765543211000 000 0000
Q ss_pred eEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce-eEEEEecCCCEEEE-EeCC
Q 010256 285 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI-SDIKFARNGRHILS-RDYM 362 (514)
Q Consensus 285 i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~g~~l~~-~~~~ 362 (514)
.+.... ++ .++.+..++.+..+|+++++..++.. +........ .. ....+ ....+ .+..++. +.++
T Consensus 184 -~sp~~~-~~--~v~~~~~~g~v~ald~~tG~~~W~~~--~~~~~g~~~---~~-~~~~~~~~p~~--~~~~vy~~~~~g 251 (377)
T TIGR03300 184 -ASPVIA-DG--GVLVGFAGGKLVALDLQTGQPLWEQR--VALPKGRTE---LE-RLVDVDGDPVV--DGGQVYAVSYQG 251 (377)
T ss_pred -CCCEEE-CC--EEEEECCCCEEEEEEccCCCEeeeec--cccCCCCCc---hh-hhhccCCccEE--ECCEEEEEEcCC
Confidence 111122 23 56778889999999999987654211 000000000 00 00000 11112 2334554 4569
Q ss_pred eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC-C
Q 010256 363 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-K 441 (514)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~ 441 (514)
.+..||..+ ++.+....... . .... .++..++.++.||.++.+|..+++.+ ...+.. .
T Consensus 252 ~l~a~d~~t-G~~~W~~~~~~-~----------------~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~-W~~~~~~~ 310 (377)
T TIGR03300 252 RVAALDLRS-GRVLWKRDASS-Y----------------QGPA--VDDNRLYVTDADGVVVALDRRSGSEL-WKNDELKY 310 (377)
T ss_pred EEEEEECCC-CcEEEeeccCC-c----------------cCce--EeCCEEEEECCCCeEEEEECCCCcEE-EccccccC
Confidence 999999987 66554443111 0 0222 24667778889999999999888543 222111 1
Q ss_pred cceeEEEECCCCCceeecCCCCeEEEe
Q 010256 442 NPMRRQVQTPSRPSRPLGSLSGVVRRV 468 (514)
Q Consensus 442 ~~v~~~~~~~~~~~l~s~s~d~~v~i~ 468 (514)
........ .+..|++++.+|.+.++
T Consensus 311 ~~~ssp~i--~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 311 RQLTAPAV--VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred CccccCEE--ECCEEEEEeCCCEEEEE
Confidence 11112122 35688888999999884
No 296
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.71 E-value=9.3e-05 Score=65.12 Aligned_cols=183 Identities=16% Similarity=0.168 Sum_probs=105.9
Q ss_pred eEEEEEC-CCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccc-cCCceEEEEEecCCCcEEEEEecC--------C
Q 010256 236 INSISNN-SDGETFISADDLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSK--------G 305 (514)
Q Consensus 236 v~~~~~~-~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~~d--------g 305 (514)
...+++. +++ .|+.+..+.+.++|..+++.. .+.... ... .....+.+++.|+| ++.++.... |
T Consensus 42 ~~G~~~~~~~g-~l~v~~~~~~~~~d~~~g~~~-~~~~~~---~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g 115 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADSGGIAVVDPDTGKVT-VLADLP---DGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPG 115 (246)
T ss_dssp EEEEEEECTTS-EEEEEETTCEEEEETTTTEEE-EEEEEE---TTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSE
T ss_pred CceEEEEccCC-EEEEEEcCceEEEecCCCcEE-EEeecc---CCCcccCCCceEEEcCCC-CEEEEecCCCcccccccc
Confidence 5567777 565 444453344555688755322 222110 011 34567899999999 766665543 4
Q ss_pred eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-C-CeEEEEEccCCCCcee---eee
Q 010256 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVA---TFQ 380 (514)
Q Consensus 306 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~iwd~~~~~~~~~---~~~ 380 (514)
.|..++.. ++.. .... .....+.++|+|+++.|+..+ . +.|..+++...+..+. .+.
T Consensus 116 ~v~~~~~~-~~~~----~~~~-------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~ 177 (246)
T PF08450_consen 116 SVYRIDPD-GKVT----VVAD-------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFI 177 (246)
T ss_dssp EEEEEETT-SEEE----EEEE-------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEE
T ss_pred ceEEECCC-CeEE----EEec-------------CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEE
Confidence 56666665 3321 1111 124578999999999887654 3 8899999875333222 111
Q ss_pred eccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEEC-CCCCce
Q 010256 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQT-PSRPSR 456 (514)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l 456 (514)
........ .-.+++..+|++.++.-..+.|.+++.+ ++ ....+......++.++|. ++.+.|
T Consensus 178 ~~~~~~g~------------pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~-~~~~i~~p~~~~t~~~fgg~~~~~L 240 (246)
T PF08450_consen 178 DFPGGPGY------------PDGLAVDSDGNLWVADWGGGRIVVFDPD-GK-LLREIELPVPRPTNCAFGGPDGKTL 240 (246)
T ss_dssp E-SSSSCE------------EEEEEEBTTS-EEEEEETTTEEEEEETT-SC-EEEEEE-SSSSEEEEEEESTTSSEE
T ss_pred EcCCCCcC------------CCcceEcCCCCEEEEEcCCCEEEEECCC-cc-EEEEEcCCCCCEEEEEEECCCCCEE
Confidence 11110000 1168999999988887788999999987 53 444555445578889994 554443
No 297
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=1.1e-07 Score=81.35 Aligned_cols=155 Identities=17% Similarity=0.241 Sum_probs=109.8
Q ss_pred CCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccc
Q 010256 245 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (514)
Q Consensus 245 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 324 (514)
+-.+++|-+..|-+-+++++.+. .+. ..+.|.++.|...+ +++..|+.+|.|..+|+|.+..- ..
T Consensus 225 gyhfs~G~sqqv~L~nvetg~~q---------sf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG----~~ 289 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVETGHQQ---------SFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQG----NG 289 (425)
T ss_pred eeeecccccceeEEEEeeccccc---------ccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccC----CC
Confidence 44455567788888898876543 333 46678889999887 89999999999999999976321 00
Q ss_pred eeccCCCCccceeeccccceeEEEEec-CCCEEEEEe-CCeEEEEEccCCCCc---eeeeeeccccccccccccccCCcc
Q 010256 325 FEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGP---VATFQVHEHLRPKLCDLYENDSIF 399 (514)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~-~~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 399 (514)
+ ...---|.+.|+++..-. ++++|++.+ +|+|++||.+. -+. +..+.+|......+
T Consensus 290 ~--------~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l---------- 350 (425)
T KOG2695|consen 290 W--------CAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYL---------- 350 (425)
T ss_pred c--------ceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeeccccccccc----------
Confidence 0 011223557888887665 677777765 49999999986 555 78888886543211
Q ss_pred ceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee
Q 010256 400 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL 437 (514)
Q Consensus 400 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 437 (514)
-+-..+....++++++|...+||.+..+. +..++
T Consensus 351 ---~~~v~~eeg~I~s~GdDcytRiWsl~~gh-Ll~ti 384 (425)
T KOG2695|consen 351 ---PAHVKEEEGSIFSVGDDCYTRIWSLDSGH-LLCTI 384 (425)
T ss_pred ---ccccccccceEEEccCeeEEEEEecccCc-eeecc
Confidence 24556777889999999999999999884 33443
No 298
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=3.8e-06 Score=79.92 Aligned_cols=258 Identities=14% Similarity=0.154 Sum_probs=158.8
Q ss_pred cccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
|...-.++.|+|.| ++|.|+.. .|.+-|..+-+ .+..+.-|. .
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q-----------------------~iqsie~h~------------s 56 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQ-----------------------LIQSIELHQ------------S 56 (1062)
T ss_pred CcccccccccCccc-eEEEecCc-eEEEEehhhhh-----------------------hhhccccCc------------c
Confidence 34447789999988 78888654 68888865444 345566666 7
Q ss_pred ceeEEEEeeCCC----------CcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCC
Q 010256 114 KINKIRWCQSAN----------SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (514)
Q Consensus 114 ~v~~i~~~~~~~----------~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 183 (514)
.|+.++|.|.+- .-+++++...|.|.+||...+.....
T Consensus 57 ~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~-------------------------------- 104 (1062)
T KOG1912|consen 57 AVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW-------------------------------- 104 (1062)
T ss_pred ceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh--------------------------------
Confidence 799999977321 12455566678888888765431111
Q ss_pred CccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC---CCC-EEEEe-cCCeEEE
Q 010256 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGE-TFISA-DDLRINL 258 (514)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~-~l~s~-~d~~i~i 258 (514)
+..|..++..++|-+ +.+ .|++- ...++.+
T Consensus 105 ---------------------------------------------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvL 139 (1062)
T KOG1912|consen 105 ---------------------------------------------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVL 139 (1062)
T ss_pred ---------------------------------------------hcCCCcchhheeeeeccCcchheeEEecCCcEEEE
Confidence 245556677777754 343 34444 7889999
Q ss_pred EeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC---CCc--
Q 010256 259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA---PGT-- 333 (514)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~---~~~-- 333 (514)
|+..+++...+ .........++.+.|-..+.+..-+..|.+.+-+.-.........+.+....+ +..
T Consensus 140 wntdtG~k~Wk--------~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~le 211 (1062)
T KOG1912|consen 140 WNTDTGEKFWK--------YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLE 211 (1062)
T ss_pred EEccCCceeec--------cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhh
Confidence 99998876653 22234556678999877666776777777777766543333322333322211 000
Q ss_pred cceeec--cc---------cceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccce
Q 010256 334 RSFFTE--II---------ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (514)
Q Consensus 334 ~~~~~~--~~---------~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (514)
+....+ ++ -....++|+|.-+.++-... ..+.|+|++. ..++.......+...
T Consensus 212 re~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~ak-------------- 276 (1062)
T KOG1912|consen 212 RETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGAK-------------- 276 (1062)
T ss_pred hhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCcc--------------
Confidence 000000 00 01234677886665554443 7899999997 777777665554322
Q ss_pred eeEEEcCCCC--EEEEEeCCCcEEEEecCC
Q 010256 402 FECCLSGDGG--RVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 402 ~~~~~s~~~~--~l~s~~~dg~i~iwd~~~ 429 (514)
-+.+-|+++ .|++.-.||.+.+|-.+.
T Consensus 277 -fv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 277 -FVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred -eeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 466777664 688899999999997654
No 299
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=3.3e-08 Score=94.76 Aligned_cols=219 Identities=14% Similarity=0.250 Sum_probs=141.0
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
...|...-+|++|+-+.+.|+.|+..|.|++|++.+|... ....+|.
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e-----------------------~s~ncH~---------- 1143 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME-----------------------ESVNCHQ---------- 1143 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc-----------------------ccccccc----------
Confidence 3467889999999999999999999999999999988742 3456776
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCC--CeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTND--KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
..|+.+.= +.+|..+++.+.- --..+|++..-
T Consensus 1144 --SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s~------------------------------------------ 1177 (1516)
T KOG1832|consen 1144 --SAVTLVEP--SVDGSTQLTSSSSSSPLSALWDASST------------------------------------------ 1177 (1516)
T ss_pred --cccccccc--cCCcceeeeeccccCchHHHhccccc------------------------------------------
Confidence 77877764 6777777765432 23456665431
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
..++..| ..-.++.|+...+.-+.| ......+||+++...+
T Consensus 1178 ---------------------------------~~~~Hsf-----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1178 ---------------------------------GGPRHSF-----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred ---------------------------------cCccccc-----cccceeehhhhHHHHHhcccccceEEEecccCcHH
Confidence 0111111 223456666554433444 4456789999988766
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
...+.. ..+....-..+.|+|+. .+++ .|| .+||.+..+. ++.|+.-. .--.-
T Consensus 1220 ~tylt~----~~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~a----Ih~FD~ft-------------~~~~G 1272 (1516)
T KOG1832|consen 1220 QTYLTD----TVTSSYSNNLAHFSPCD-TLIL---NDG--VLWDVRIPEA----IHRFDQFT-------------DYGGG 1272 (1516)
T ss_pred HHhcCc----chhhhhhccccccCCCc-ceEe---eCc--eeeeeccHHH----Hhhhhhhe-------------ecccc
Confidence 542211 11112223678899998 6666 455 4799998654 44444321 11223
Q ss_pred EEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEE
Q 010256 348 KFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 415 (514)
Q Consensus 348 ~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 415 (514)
.|+|.|..++..+ .|||+++ .+.++....-... .+.|+..|..+..
T Consensus 1273 ~FHP~g~eVIINS----EIwD~RT-F~lLh~VP~Ldqc-----------------~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1273 GFHPSGNEVIINS----EIWDMRT-FKLLHSVPSLDQC-----------------AVTFNSTGDVMYA 1318 (1516)
T ss_pred cccCCCceEEeec----hhhhhHH-HHHHhcCccccce-----------------EEEeccCccchhh
Confidence 5899999888866 4999998 7777766544432 6788888876553
No 300
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.66 E-value=7.2e-07 Score=73.45 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=60.7
Q ss_pred cCeEEEEECCCCCE-EEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 234 YHINSISNNSDGET-FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 234 ~~v~~~~~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
..|.+++-+|..+. +++| +||.+-+||.+...... ..+..|+.++..+-|+|..+..|+++++||.+..||
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~-------S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV-------SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchH-------HHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 34889999997554 5556 89999999998553222 246789999999999999889999999999999999
Q ss_pred cCC
Q 010256 312 MRQ 314 (514)
Q Consensus 312 ~~~ 314 (514)
-.+
T Consensus 253 as~ 255 (319)
T KOG4714|consen 253 AST 255 (319)
T ss_pred CCC
Confidence 875
No 301
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.62 E-value=7.3e-07 Score=78.09 Aligned_cols=150 Identities=13% Similarity=0.079 Sum_probs=98.3
Q ss_pred EEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE---eC-
Q 010256 286 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---DY- 361 (514)
Q Consensus 286 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~---~~- 361 (514)
..+..+|.+ +++|.+..+....+++++......+....+.... .-+++.|..+......+ +|
T Consensus 66 ~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-------------~~~ai~~~~~~~sv~v~dkagD~ 131 (390)
T KOG3914|consen 66 ALVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-------------RPTAISFIREDTSVLVADKAGDV 131 (390)
T ss_pred cccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-------------CcceeeeeeccceEEEEeecCCc
Confidence 344556666 7888888888877777766543222222222221 22334444444444432 33
Q ss_pred CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCC
Q 010256 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK 441 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 441 (514)
..+.+|.... .....+.+|-.+ ++.++|+||+++|+++..|..|+|-......-...-.-||+
T Consensus 132 ~~~di~s~~~--~~~~~~lGhvSm---------------l~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~ 194 (390)
T KOG3914|consen 132 YSFDILSADS--GRCEPILGHVSM---------------LLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHK 194 (390)
T ss_pred eeeeeecccc--cCcchhhhhhhh---------------hheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccH
Confidence 6666666553 233344455544 34899999999999999999999988765433334455899
Q ss_pred cceeEEEECCCCCceeecCCCCeEEE
Q 010256 442 NPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 442 ~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.-|..++.-++.. |+|+|.|+++++
T Consensus 195 eFVS~isl~~~~~-LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 195 EFVSTISLTDNYL-LLSGSGDKTLRL 219 (390)
T ss_pred hheeeeeeccCce-eeecCCCCcEEE
Confidence 9999999987744 899999999999
No 302
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.62 E-value=7.4e-08 Score=56.83 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=31.2
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEE
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~ 63 (514)
..+|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus 7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 458999999999999999999999999999997
No 303
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.7e-06 Score=76.88 Aligned_cols=243 Identities=16% Similarity=0.140 Sum_probs=136.3
Q ss_pred ccCccCeEEEEECCCCCEEEEe-c-CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCC-cEEEE-EecCC
Q 010256 230 HAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-NMLAY-SSSKG 305 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~-~~l~~-~~~dg 305 (514)
..|-..|.+++.+-++.++.+. . |..++++|++.-...-.+ .+.-....+. ...+|... ..++. .-.++
T Consensus 50 raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminmi------KL~~lPg~a~-wv~skGd~~s~IAVs~~~sg 122 (558)
T KOG0882|consen 50 RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMI------KLVDLPGFAE-WVTSKGDKISLIAVSLFKSG 122 (558)
T ss_pred HHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhc------ccccCCCceE-EecCCCCeeeeEEeecccCC
Confidence 5677888899999999999996 5 999999999855432111 1111122221 11222211 13333 33478
Q ss_pred eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCC-----ceeee
Q 010256 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG-----PVATF 379 (514)
Q Consensus 306 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~-----~~~~~ 379 (514)
.+.++|-....+.. .. +-.-|.++|..+.+.+-+..+++.+. |.|.-|....+.+ ....+
T Consensus 123 ~i~VvD~~~d~~q~---~~-----------fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~ 188 (558)
T KOG0882|consen 123 KIFVVDGFGDFCQD---GY-----------FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFEL 188 (558)
T ss_pred CcEEECCcCCcCcc---ce-----------ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccc
Confidence 89999976654221 11 12336689999999999999999875 9999999872111 11111
Q ss_pred eeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeec
Q 010256 380 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
+.... +-.+...+. ...++.|+|+|..+.+-+.|..|++++.++++ +.+.+...... ..+.|..++-+.
T Consensus 189 K~eTd----Ly~f~K~Kt--~pts~Efsp~g~qistl~~DrkVR~F~~KtGk-lvqeiDE~~t~---~~~q~ks~y~l~- 257 (558)
T KOG0882|consen 189 KHETD----LYGFPKAKT--EPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK-LVQEIDEVLTD---AQYQPKSPYGLM- 257 (558)
T ss_pred cccch----hhccccccc--CccceEEccccCcccccCcccEEEEEEeccch-hhhhhhccchh---hhhccccccccc-
Confidence 11111 111111111 12389999999999999999999999999874 33333321110 011111111000
Q ss_pred CCCCeEEEeeCCCCCccccCCccccccc-ceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 460 SLSGVVRRVKGADNSALDANGNAFDFSM-KLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 460 s~d~~v~i~~~~~~~~~~~~~~~~~~~~-~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
.+.+ +.+.. .......+.. .-+.+.|...+++|+-++-=++.+++
T Consensus 258 ----~Vel--gRRma---verelek~~~~~~~~~~fdes~~flly~t~~gikvin 303 (558)
T KOG0882|consen 258 ----HVEL--GRRMA---VERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVIN 303 (558)
T ss_pred ----eeeh--hhhhh---HHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEE
Confidence 0011 11111 1111111222 33678899999999988877777664
No 304
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.59 E-value=7.9e-05 Score=65.00 Aligned_cols=254 Identities=13% Similarity=0.125 Sum_probs=143.4
Q ss_pred cceEEEEEcC-CCCeEEEecCCC-eEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 36 DIISAIEFDK-SGDHLATGDRGG-RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 36 ~~V~~~~~s~-~g~~l~tg~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
.....++.+| .+..++.+..-| ...+||..+++... .+ ..|+. ..|.||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~----~~--------~a~~g---RHFyGHg------------- 56 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQ----RL--------WAPPG---RHFYGHG------------- 56 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceee----EE--------cCCCC---CEEecCE-------------
Confidence 4456788999 667788887766 47889998877531 00 01111 2466775
Q ss_pred ceeEEEEeeCCCCcEEEEee-----CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 114 KINKIRWCQSANSALYLLST-----NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~-----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
.| +++|++|++.- ..|.|-|||...+ ...+-++... . ..+..+.+.|||+.|.+
T Consensus 57 -----~f--s~dG~~LytTEnd~~~g~G~IgVyd~~~~-~~ri~E~~s~--------G-----IGPHel~l~pDG~tLvV 115 (305)
T PF07433_consen 57 -----VF--SPDGRLLYTTENDYETGRGVIGVYDAARG-YRRIGEFPSH--------G-----IGPHELLLMPDGETLVV 115 (305)
T ss_pred -----EE--cCCCCEEEEeccccCCCcEEEEEEECcCC-cEEEeEecCC--------C-----cChhhEEEcCCCCEEEE
Confidence 46 67888999863 4589999999932 2333222211 1 12226788999987755
Q ss_pred ccCCCCCC------cccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCe------
Q 010256 189 NFGCASND------SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLR------ 255 (514)
Q Consensus 189 ~~~~~~~~------~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~------ 255 (514)
..+...+. .+-....+.++..-| ...............-|.-.|..++++++|..++.. ..|.
T Consensus 116 ANGGI~Thpd~GR~kLNl~tM~psL~~ld----~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~P 191 (305)
T PF07433_consen 116 ANGGIETHPDSGRAKLNLDTMQPSLVYLD----ARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPP 191 (305)
T ss_pred EcCCCccCcccCceecChhhcCCceEEEe----cCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCC
Confidence 44332111 111122222332221 011000000000013466789999999999888775 3322
Q ss_pred -EEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEE-EEEecCCeEEEEEcCCCccccccccceeccCCCCc
Q 010256 256 -INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (514)
Q Consensus 256 -i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 333 (514)
|-+++.. + ....+...+.........+-+|++++++ .++ +++=..+.+.+||..++..... ...
T Consensus 192 Lva~~~~g--~-~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-~~ia~tsPrGg~~~~~d~~tg~~~~~----~~l------ 257 (305)
T PF07433_consen 192 LVALHRRG--G-ALRLLPAPEEQWRRLNGYIGSIAADRDG-RLIAVTSPRGGRVAVWDAATGRLLGS----VPL------ 257 (305)
T ss_pred eEEEEcCC--C-cceeccCChHHHHhhCCceEEEEEeCCC-CEEEEECCCCCEEEEEECCCCCEeec----ccc------
Confidence 3333332 2 1232222222334557889999999998 555 4555678899999999886321 111
Q ss_pred cceeeccccceeEEEEecCCCEEEEEeCCeEE
Q 010256 334 RSFFTEIIASISDIKFARNGRHILSRDYMTLK 365 (514)
Q Consensus 334 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~ 365 (514)
..+..++-.+++ ++++...|.+.
T Consensus 258 --------~D~cGva~~~~~-f~~ssG~G~~~ 280 (305)
T PF07433_consen 258 --------PDACGVAPTDDG-FLVSSGQGQLI 280 (305)
T ss_pred --------CceeeeeecCCc-eEEeCCCccEE
Confidence 357777777776 67665555543
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.57 E-value=9.3e-05 Score=64.89 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=81.4
Q ss_pred EEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccce
Q 010256 247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (514)
Q Consensus 247 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 325 (514)
.++.+ .++.++.+|..+++...+..... ..... ..........+ ..++.+..++.|..+|+++|+.... +
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~---~~~~~-~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w~----~ 148 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTS---SPPAG-VRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLWK----Y 148 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-S---SCTCS-TB--SEEEEET-TEEEEEETCSEEEEEETTTTEEEEE----E
T ss_pred ccccccceeeeEecccCCcceeeeecccc---ccccc-cccccCceEec-CEEEEEeccCcEEEEecCCCcEEEE----e
Confidence 33444 77789999988777665421110 00011 11222222235 6788888899999999999987543 2
Q ss_pred eccCCCCccceeeccccceeEEEEecCCCEEEEEeCCe-EEEEEccCCCCceeeeeeccccccccccccccCCccceeeE
Q 010256 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMT-LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (514)
.....+.... +. ....+..-....++..+++..++. +.+ |+.+ ++.+-... .... ..
T Consensus 149 ~~~~~~~~~~-~~-~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~t-g~~~w~~~-~~~~-----------------~~ 206 (238)
T PF13360_consen 149 PVGEPRGSSP-IS-SFSDINGSPVISDGRVYVSSGDGRVVAV-DLAT-GEKLWSKP-ISGI-----------------YS 206 (238)
T ss_dssp ESSTT-SS---EE-EETTEEEEEECCTTEEEEECCTSSEEEE-ETTT-TEEEEEEC-SS-E-----------------CE
T ss_pred ecCCCCCCcc-ee-eecccccceEEECCEEEEEcCCCeEEEE-ECCC-CCEEEEec-CCCc-----------------cC
Confidence 2111000000 00 011122222223454444444554 555 8887 55332222 1110 11
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCce
Q 010256 405 CLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (514)
Q Consensus 405 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 432 (514)
....++..|+.++.++.|..||+++++.
T Consensus 207 ~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 207 LPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp CEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred CceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 2456778888888999999999999843
No 306
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.55 E-value=2.9e-05 Score=67.63 Aligned_cols=202 Identities=14% Similarity=0.114 Sum_probs=124.9
Q ss_pred CceEEEEEecCCCcEEEEEecCCe-EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-
Q 010256 283 EVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD- 360 (514)
Q Consensus 283 ~~i~~v~~~p~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~- 360 (514)
.....++.+|..+..++.+-.-|+ ..+||.++++.. ..+.... ...|.+| -.||+||++|++..
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~----~~~~a~~----gRHFyGH------g~fs~dG~~LytTEn 70 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL----QRLWAPP----GRHFYGH------GVFSPDGRLLYTTEN 70 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee----eEEcCCC----CCEEecC------EEEcCCCCEEEEecc
Confidence 344577889966577777777664 678999998863 2222211 2234444 57999999999841
Q ss_pred -----CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC-----------------
Q 010256 361 -----YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY----------------- 418 (514)
Q Consensus 361 -----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~----------------- 418 (514)
.|.|-|||.....+.+.++..+.--.- .+.+.|||+.|+.+..
T Consensus 71 d~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH---------------el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 71 DYETGRGVIGVYDAARGYRRIGEFPSHGIGPH---------------ELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred ccCCCcEEEEEEECcCCcEEEeEecCCCcChh---------------hEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 389999999843555666655542211 6889999987776532
Q ss_pred -CCcEEEEecCCCceee-eee--cCCCcceeEEEECCCCCceeecCCCCeEEE-------eeCCC-CCccccCCc-cccc
Q 010256 419 -SNLFRVFGCSEGSAES-TTL--EASKNPMRRQVQTPSRPSRPLGSLSGVVRR-------VKGAD-NSALDANGN-AFDF 485 (514)
Q Consensus 419 -dg~i~iwd~~~~~~~~-~~~--~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i-------~~~~~-~~~~~~~~~-~~~~ 485 (514)
+-++-+-|..+|+.+. ..+ .-|..+++.+++.++|..+...-..+.-.- .+... +.-...... ....
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l 215 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRL 215 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhh
Confidence 1234445556664332 335 347778888888888766555433332111 22222 111111111 1235
Q ss_pred ccceEEEEEcCCCCEEEEEe--cCcEEEEe
Q 010256 486 SMKLLHLAWHPSENSIACAA--SNSLYMYY 513 (514)
Q Consensus 486 ~~~v~~~~~spd~~~l~~~~--~~~~~i~~ 513 (514)
...|-+|++++++.++++.+ .+.+.+|.
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence 68899999999999999888 67777774
No 307
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.55 E-value=1.6e-05 Score=79.75 Aligned_cols=239 Identities=14% Similarity=0.114 Sum_probs=133.8
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
+.|.++.|..+.+.++.+ .+|.|.+-|.++..... ...-...|.+++|+||+ .+++..+..+++.+-+-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei---------vg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~ 138 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI---------VGNVDNGISAASWSPDE-ELLALITGRQTLLFMTK 138 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee---------eeeccCceEEEeecCCC-cEEEEEeCCcEEEEEec
Confidence 679999999999888888 89999999887554321 12246789999999999 88888888877765432
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 392 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 392 (514)
+...+.. +.+..... ..+..-.+-|-..... +-|+.|+....+.....+.+.....+.+
T Consensus 139 -~f~~i~E--~~L~~d~~---------~~sk~v~VGwGrkeTq-frgs~gr~~~~~~~~~ek~~~~~~~~~~-------- 197 (1265)
T KOG1920|consen 139 -DFEPIAE--KPLDADDE---------RKSKFVNVGWGRKETQ-FRGSEGRQAARQKIEKEKALEQIEQDDH-------- 197 (1265)
T ss_pred -cccchhc--cccccccc---------cccccceeccccccee-eecchhhhcccccccccccccchhhccC--------
Confidence 2222110 00100000 0011222223211101 1112122222111110111111111111
Q ss_pred cccCCccceeeEEEcCCCCEEEEEe----CC-CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecC---CCCe
Q 010256 393 YENDSIFDKFECCLSGDGGRVATGS----YS-NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS---LSGV 464 (514)
Q Consensus 393 ~~~~~~~~v~~~~~s~~~~~l~s~~----~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s---~d~~ 464 (514)
.++++|--||+++|+.. .+ ..|+|||.+ | .+..+-+....--.++.|.|.|.++++-. .|..
T Consensus 198 --------~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~ 267 (1265)
T KOG1920|consen 198 --------KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD 267 (1265)
T ss_pred --------CceEEEccCCcEEEEEEEeccCCceeEEEeccc-c-hhhcccCcccccccceeecCCCCeEeeeeecCCCCc
Confidence 12799999999998732 23 789999987 3 33223333333345789999999998763 3455
Q ss_pred EEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEE---EecCc-EEEEe
Q 010256 465 VRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC---AASNS-LYMYY 513 (514)
Q Consensus 465 v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~---~~~~~-~~i~~ 513 (514)
|.+.....+...++..........|..++|+.++..||+ ...+. +.+|.
T Consensus 268 IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 268 IVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred EEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence 666333322222222222222445999999999999997 44555 88885
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.46 E-value=8.9e-07 Score=75.94 Aligned_cols=135 Identities=15% Similarity=0.142 Sum_probs=93.5
Q ss_pred CccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEec-CCCcEEEEEecCCeEEE
Q 010256 232 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRL 309 (514)
Q Consensus 232 h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~dg~i~~ 309 (514)
.++.|.++.|...++++..| ..|.|..+|++...+-- ..+...--|...|+++..-. ++ ..|++.+.+|.|++
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~----~~~a~rlyh~Ssvtslq~Lq~s~-q~LmaS~M~gkikL 325 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN----GWCAQRLYHDSSVTSLQILQFSQ-QKLMASDMTGKIKL 325 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC----CcceEEEEcCcchhhhhhhcccc-ceEeeccCcCceeE
Confidence 55788899999989999999 99999999999662210 00112223788899988776 44 78899999999999
Q ss_pred EEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE-EeCCeEEEEEccCCCCceeeeeecc
Q 010256 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHE 383 (514)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~ 383 (514)
||+|.-+... -+..+++|-.. ..-.-+.+.+....+++ |+|...+||.++. +..+.+++...
T Consensus 326 yD~R~~K~~~-~V~qYeGHvN~----------~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~-ghLl~tipf~~ 388 (425)
T KOG2695|consen 326 YDLRATKCKK-SVMQYEGHVNL----------SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS-GHLLCTIPFPY 388 (425)
T ss_pred eeehhhhccc-ceeeeeccccc----------ccccccccccccceEEEccCeeEEEEEeccc-CceeeccCCCC
Confidence 9999765422 25556655321 11111233455555665 5669999999997 88888776554
No 309
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.39 E-value=0.00013 Score=67.87 Aligned_cols=281 Identities=16% Similarity=0.141 Sum_probs=137.0
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccC--Ccccccccc---------cc---ccc--C----Cccceeeeee
Q 010256 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNG--GQRRDLEMM---------DY---SMS--R----HPEFRYKTEF 96 (514)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~--~~~~~~~~~---------~~---~~~--~----~~~~~~~~~~ 96 (514)
.|+.+.|+++.-.||+|...|.|.||.+...+..+ .....++.. .. .+. . ...+.....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58999999998899999999999999987665432 000111100 00 000 0 0011112222
Q ss_pred ccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCc
Q 010256 97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (514)
Q Consensus 97 ~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (514)
+.. .+.|++++. +.- .+++.|..+|.+.|.|++...+........+.........+. .
T Consensus 83 ~~~------------~g~vtal~~--S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt-------~ 140 (395)
T PF08596_consen 83 DAK------------QGPVTALKN--SDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVT-------S 140 (395)
T ss_dssp ---------------S-SEEEEEE---BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EE-------E
T ss_pred ecc------------CCcEeEEec--CCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCee-------E
Confidence 222 388999998 333 499999999999999999988776655443111111122222 2
Q ss_pred eeec-----cCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEE-ECCC-C----
Q 010256 177 KSYM-----ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS-NNSD-G---- 245 (514)
Q Consensus 177 ~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~-~---- 245 (514)
+.|+ .|+ .+...+++|...|.+.+|.++-.............. ..+.++|..+. ++.+ |
T Consensus 141 ieF~vm~~~~D~---------ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~ 210 (395)
T PF08596_consen 141 IEFSVMTLGGDG---------YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESAL 210 (395)
T ss_dssp EEEEEEE-TTSS---------SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-B
T ss_pred EEEEEEecCCCc---------ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCccc
Confidence 3332 122 111234778888999999855333322222222221 34556666655 4222 1
Q ss_pred ----------------CEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEe-----cCCCcEEEEEecC
Q 010256 246 ----------------ETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-----PTHCNMLAYSSSK 304 (514)
Q Consensus 246 ----------------~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~-----p~~~~~l~~~~~d 304 (514)
.+++.+.+..++++...+.+...+. + ........+.+- ..+ ..|++-..+
T Consensus 211 At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~-------~-~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~ 281 (395)
T PF08596_consen 211 ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKS-------F-DDPFLCSSASVVPTISRNGG-YCLVCLFNN 281 (395)
T ss_dssp -BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEE-EEEEEEETT
T ss_pred CchhHhhccccCCCcCcEEEEEcccceEEEeCCCCccccee-------e-ccccccceEEEEeecccCCc-eEEEEEECC
Confidence 1455557888999998866654432 1 111122333442 234 688888999
Q ss_pred CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEcc
Q 010256 305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (514)
Q Consensus 305 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~ 370 (514)
|.+++|.+..-+.+ ....... ......+....++++|+.++-.+...+.++.+-
T Consensus 282 G~i~i~SLP~Lkei----~~~~l~~--------~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~ 335 (395)
T PF08596_consen 282 GSIRIYSLPSLKEI----KSVSLPP--------PLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVW 335 (395)
T ss_dssp SEEEEEETTT--EE----EEEE-SS-----------HHHHTT-EE-TTS-EEEE-SSSEEEEEEEE
T ss_pred CcEEEEECCCchHh----hcccCCC--------ccccccccccEECCCCCEEEEeCcccEEEEEEE
Confidence 99999999875542 2222211 011134556778999998877655455544443
No 310
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.39 E-value=0.00067 Score=68.75 Aligned_cols=240 Identities=15% Similarity=0.189 Sum_probs=129.6
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
+.|.++.|-.++.-++.+..+|.|.+-|.++.... ..|. ++..|
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-------------------------ivg~-----------vd~GI 112 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-------------------------IVGN-----------VDNGI 112 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-------------------------eeee-----------ccCce
Confidence 58999999999999999999999999887655431 1111 12779
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
.+++| ++|+..++..+..+++.+-.- +-.+.....+..... ..+ ....+-|-.....
T Consensus 113 ~aasw--S~Dee~l~liT~~~tll~mT~-~f~~i~E~~L~~d~~--~~s--------k~v~VGwGrkeTq---------- 169 (1265)
T KOG1920|consen 113 SAASW--SPDEELLALITGRQTLLFMTK-DFEPIAEKPLDADDE--RKS--------KFVNVGWGRKETQ---------- 169 (1265)
T ss_pred EEEee--cCCCcEEEEEeCCcEEEEEec-cccchhccccccccc--ccc--------ccceeccccccee----------
Confidence 99999 567778888888777765432 111111111100000 000 0001111111111
Q ss_pred CcccCCCCCCcEEeceeeccccccccccccccccc--cCccCeEEEEECCCCCEEEEe-----cC-CeEEEEeccCCCce
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAH--AHDYHINSISNNSDGETFISA-----DD-LRINLWNLEISNQS 267 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~-----~d-~~i~iwd~~~~~~~ 267 (514)
+.|+. |..... +. ........ .-.+.=..|+|--||+++++. .+ ..|++||.+ +. .
T Consensus 170 ---frgs~-gr~~~~------~~----~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~-L 233 (1265)
T KOG1920|consen 170 ---FRGSE-GRQAAR------QK----IEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA-L 233 (1265)
T ss_pred ---eecch-hhhccc------cc----ccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch-h
Confidence 10000 000000 00 00000000 011122468999999999972 34 899999987 32 1
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEe---cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
-. .-+.....=.+++|-|.| .++++-- .|+.|.+|.-+ |..-......+... ...+
T Consensus 234 ns-------~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~d------------e~~v 292 (1265)
T KOG1920|consen 234 NS-------TSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLD------------EKEV 292 (1265)
T ss_pred hc-------ccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecC-CccccccccCCccc------------ccch
Confidence 11 111122333578999998 7777643 35678888753 33211111111111 1348
Q ss_pred eEEEEecCCCEEEE---EeC-CeEEEEEccC
Q 010256 345 SDIKFARNGRHILS---RDY-MTLKLWDINM 371 (514)
Q Consensus 345 ~~~~~s~~g~~l~~---~~~-~~i~iwd~~~ 371 (514)
..++|+.++..|+. ... ..|++|-+.+
T Consensus 293 e~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 293 EELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred heeeecCCCCceeeeecccccceEEEEEecC
Confidence 99999999999997 233 5699999875
No 311
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00018 Score=69.84 Aligned_cols=117 Identities=11% Similarity=0.087 Sum_probs=78.4
Q ss_pred ccCeEEEEECCCCCEEEEe-cCCeEEEEe--ccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010256 233 DYHINSISNNSDGETFISA-DDLRINLWN--LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~ 309 (514)
..++.+++++.+-+.+|.| .+|.|.++. +...+.... .-......+|+.+.+..++ ..++-...-..|.+
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~------~~~~~~~~pITgL~~~~d~-~s~lFv~Tt~~V~~ 197 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ------DYSHRGKEPITGLALRSDG-KSVLFVATTEQVML 197 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce------eeeccCCCCceeeEEecCC-ceeEEEEecceeEE
Confidence 4678899999999999999 999999984 321111111 0122357899999999988 44333444568899
Q ss_pred EEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccC
Q 010256 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371 (514)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~ 371 (514)
|.+...... .+ .+..|..+..|..|++...-++++....+.+|+...
T Consensus 198 y~l~gr~p~---~~------------~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~ 244 (933)
T KOG2114|consen 198 YSLSGRTPS---LK------------VLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDG 244 (933)
T ss_pred EEecCCCcc---ee------------eeccCCccceeeecCCCCccEEEecCceEEEEcCCC
Confidence 998743311 11 234455688999998765546666666899999874
No 312
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.37 E-value=1.9e-06 Score=50.69 Aligned_cols=37 Identities=27% Similarity=0.644 Sum_probs=32.5
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEE
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWK 142 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~ 142 (514)
....+.+|. ..|++|+|+| ++.+|++++.|+.|++||
T Consensus 3 ~~~~~~~h~------------~~i~~i~~~~--~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHS------------SSINSIAWSP--DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSS------------SSEEEEEEET--TSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCC------------CcEEEEEEec--ccccceeeCCCCEEEEEC
Confidence 557789998 8999999965 567999999999999997
No 313
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.36 E-value=0.00095 Score=63.34 Aligned_cols=182 Identities=10% Similarity=0.037 Sum_probs=91.5
Q ss_pred EEEEe-cCCeEEEEeccCCCceeeeeccCC-CcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccc
Q 010256 247 TFISA-DDLRINLWNLEISNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (514)
Q Consensus 247 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 324 (514)
.++.+ .++.+..+|.++++...+.-...+ ........+ ... ++ .++.++.+|.+..+|..+++..++..
T Consensus 162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP----~v~-~~--~v~~~~~~g~v~a~d~~~G~~~W~~~-- 232 (394)
T PRK11138 162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAP----ATA-FG--GAIVGGDNGRVSAVLMEQGQLIWQQR-- 232 (394)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCC----EEE-CC--EEEEEcCCCEEEEEEccCChhhheec--
Confidence 34445 788888888887776544310000 000011111 111 23 46667889999999999988654311
Q ss_pred eeccCCCCccceeeccccceeEEEEec---CCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccce
Q 010256 325 FEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (514)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~i~~~~~s~---~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (514)
+........ + .....+.-+| ++..++.+.++.+..+|..+ ++.+-.......
T Consensus 233 ~~~~~~~~~---~----~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~----------------- 287 (394)
T PRK11138 233 ISQPTGATE---I----DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS-GQIVWKREYGSV----------------- 287 (394)
T ss_pred cccCCCccc---h----hcccccCCCcEEECCEEEEEEcCCeEEEEECCC-CCEEEeecCCCc-----------------
Confidence 000000000 0 0001111112 34444444568999999987 665433221100
Q ss_pred eeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCC-cceeEEEECCCCCceeecCCCCeEEE
Q 010256 402 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 402 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
..+.. ++..|+.++.+|.++.+|..+++.+- ....-. ....+... .+..|..++.||.+..
T Consensus 288 ~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W-~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 288 NDFAV--DGGRIYLVDQNDRVYALDTRGGVELW-SQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHW 349 (394)
T ss_pred cCcEE--ECCEEEEEcCCCeEEEEECCCCcEEE-cccccCCCcccCCEE--ECCEEEEEeCCCEEEE
Confidence 01222 45667778889999999998874321 111100 11111111 2456777888898887
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=1.8e-05 Score=75.86 Aligned_cols=193 Identities=13% Similarity=0.113 Sum_probs=127.4
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
+...+.++|++++ +++|+.|+.+|.|++++..... .+...|.
T Consensus 36 ~~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-------------------------~~~~~~s----------- 77 (846)
T KOG2066|consen 36 FLQNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-------------------------KTNFDHS----------- 77 (846)
T ss_pred HHhhhHHHHHHhh--cceeeeccccceEEEEecCCcc-------------------------ccccccc-----------
Confidence 4456889999998 7899999999999999975331 1111222
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccC-----CCcc
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN-----GGCG 186 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~l 186 (514)
.. ..+|.++++|+.||+|.|-.+-+.+......++.... ++++.|+ .+..
T Consensus 78 -~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpik----------------sial~Pd~~~~~sk~f 132 (846)
T KOG2066|consen 78 -SS--------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIK----------------SIALHPDFSRQQSKQF 132 (846)
T ss_pred -cc--------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcce----------------eEEeccchhhhhhhhe
Confidence 11 4568899999999999999998887666666653322 7788887 3333
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCc
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQ 266 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~ 266 (514)
++|+..| +.++.--|- +......+..-.++|.++.|. |+++|-++|--|++||+.+.+.
T Consensus 133 ------------v~GG~ag-lvL~er~wl------gnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~ 191 (846)
T KOG2066|consen 133 ------------VSGGMAG-LVLSERNWL------GNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQR 191 (846)
T ss_pred ------------eecCcce-EEEehhhhh------cCccceeeecCccceEEEEec--CcEEEEecCCCcEEEeccccce
Confidence 7788887 655441111 111111235667899999995 7899989666699999986655
Q ss_pred eeeeeccCCCc-ccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCC
Q 010256 267 SFNIVDVKPAN-MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (514)
Q Consensus 267 ~~~~~~~~~~~-~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~ 314 (514)
...+ ++.. ..........+.|.++. .|+.|-.| +|+|..++.
T Consensus 192 l~~i---~~p~~~~R~e~fpphl~W~~~~--~LVIGW~d-~v~i~~I~~ 234 (846)
T KOG2066|consen 192 LTNI---PPPSQSVRPELFPPHLHWQDED--RLVIGWGD-SVKICSIKK 234 (846)
T ss_pred eecc---CCCCCCCCcccCCCceEecCCC--eEEEecCC-eEEEEEEec
Confidence 4433 2211 11122334567888875 56666554 788888873
No 315
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.32 E-value=0.00033 Score=65.53 Aligned_cols=76 Identities=14% Similarity=0.246 Sum_probs=61.8
Q ss_pred cCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010256 231 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~ 309 (514)
.....|.+.+++|+.+.++.| .||+|.+||...+-.. +....-.++.++|+|+| .++++|+..|.+.+
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~----------~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~ 325 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL----------LAKAEFIPTLIAWHPDG-AIFVVGSEQGELQC 325 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee----------eeeecccceEEEEcCCC-cEEEEEcCCceEEE
Confidence 455789999999999999999 9999999998744322 12234557899999999 89999999999999
Q ss_pred EEcCCCcc
Q 010256 310 IDMRQSAL 317 (514)
Q Consensus 310 wd~~~~~~ 317 (514)
||+.-+..
T Consensus 326 FD~ALspi 333 (545)
T PF11768_consen 326 FDMALSPI 333 (545)
T ss_pred EEeecCcc
Confidence 99876543
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=5.9e-05 Score=72.54 Aligned_cols=178 Identities=15% Similarity=0.131 Sum_probs=114.8
Q ss_pred cccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCC
Q 010256 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (514)
Q Consensus 197 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 275 (514)
+++.|...|.+.+++ .... +... ..|+.. ..+|+++++| .||+|.|-.+-+.+....
T Consensus 51 ~~~~GtH~g~v~~~~----~~~~----~~~~--~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~------ 108 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTT----CQGN----PKTN--FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ------ 108 (846)
T ss_pred eeeeccccceEEEEe----cCCc----cccc--cccccc------ccCCceEEEecCCCcEEEeeccCCcccee------
Confidence 448888899998776 1110 0001 222222 5579999999 999999998887665432
Q ss_pred CcccccCCceEEEEEecC----CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 276 ANMEDLTEVITSAEFHPT----HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 276 ~~~~~~~~~i~~v~~~p~----~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.....++.+++++|+ ..+.+++|+..| +.++.-+-.... ... .+..-.++|.++.|.
T Consensus 109 ---~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk----~~v----------~l~~~eG~I~~i~W~- 169 (846)
T KOG2066|consen 109 ---YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK----DSV----------VLSEGEGPIHSIKWR- 169 (846)
T ss_pred ---EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc----cce----------eeecCccceEEEEec-
Confidence 224677899999998 236899999988 777664322111 011 123334799999997
Q ss_pred CCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 352 NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 352 ~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
|.++|-++|-.|+|||+.. ++.+..++.....+. .+.+. ..+.|.++.++++ |+..+|+|..++
T Consensus 170 -g~lIAWand~Gv~vyd~~~-~~~l~~i~~p~~~~R--~e~fp-------phl~W~~~~~LVI--GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 170 -GNLIAWANDDGVKVYDTPT-RQRLTNIPPPSQSVR--PELFP-------PHLHWQDEDRLVI--GWGDSVKICSIK 233 (846)
T ss_pred -CcEEEEecCCCcEEEeccc-cceeeccCCCCCCCC--cccCC-------CceEecCCCeEEE--ecCCeEEEEEEe
Confidence 7899999987799999987 666655544332211 11111 1588987776554 344578888887
No 317
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.23 E-value=0.0022 Score=59.67 Aligned_cols=219 Identities=8% Similarity=0.054 Sum_probs=102.7
Q ss_pred EEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCC
Q 010256 237 NSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (514)
Q Consensus 237 ~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~ 314 (514)
.++.|+||+++|+.. ++..|+.+.+-..... ....-.+..+.+---| .-- ..-.+.++|+.+
T Consensus 104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~-----------~~~yp~~~~~~YPk~G-~~n----p~v~l~v~~~~~ 167 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPP-----------DSQYPEVESIRYPKAG-DPN----PRVSLFVVDLAS 167 (353)
T ss_dssp BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSS-----------TESS-EEEEEE--BTT-S-------EEEEEEEESSS
T ss_pred cceEECCCCCEEEEEEECCcCCceEEeeccCCc-----------cccCCcccccccCCCC-CcC----CceEEEEEECCC
Confidence 468899999999987 6777766655321110 0001134445543223 111 112456788877
Q ss_pred CccccccccceeccCCCCccceeeccccceeEEEEecCCC-EEEE-Ee---C-CeEEEEEccCCCCceeeeeecc-cccc
Q 010256 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILS-RD---Y-MTLKLWDINMDSGPVATFQVHE-HLRP 387 (514)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~-~~---~-~~i~iwd~~~~~~~~~~~~~~~-~~~~ 387 (514)
++... +.... .+..-...+..+.|.++++ +++. .+ . ..+.+.|..+ +.......... ..+.
T Consensus 168 ~~~~~-----~~~~~------~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t-g~~~~~~~e~~~~Wv~ 235 (353)
T PF00930_consen 168 GKTTE-----LDPPN------SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST-GETRVVLEETSDGWVD 235 (353)
T ss_dssp TCCCE-----E---H------HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT-TTCEEEEEEESSSSSS
T ss_pred CcEEE-----eeecc------ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC-CceeEEEEecCCccee
Confidence 66421 11100 0011124689999999999 4443 22 2 4566677765 44333332222 1111
Q ss_pred ccccccccCCccceeeEEEc-CCCC-EEEEEeCCCcEEE--EecCCCceeeeeecCCCcceeE-EEECCCCCce-eecCC
Q 010256 388 KLCDLYENDSIFDKFECCLS-GDGG-RVATGSYSNLFRV--FGCSEGSAESTTLEASKNPMRR-QVQTPSRPSR-PLGSL 461 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s-~~~~-~l~s~~~dg~i~i--wd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l-~s~s~ 461 (514)
.. ....|. +++. +|.....||--+| ++...+ ....+....-.|.. +.+.++++.| .++..
T Consensus 236 ---------~~---~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~--~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 236 ---------VY---DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG--KPRQLTSGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp ---------SS---SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS--EEEESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred ---------ee---cccccccCCCCEEEEEEEcCCCcEEEEEccccc--ceeccccCceeecccceEcCCCCEEEEEecC
Confidence 00 145554 5555 4555557775444 455544 23344444455644 5667776644 34433
Q ss_pred ----CCeEEEeeCC---CCCccccCCcccccccce-EEEEEcCCCCEEEEE
Q 010256 462 ----SGVVRRVKGA---DNSALDANGNAFDFSMKL-LHLAWHPSENSIACA 504 (514)
Q Consensus 462 ----d~~v~i~~~~---~~~~~~~~~~~~~~~~~v-~~~~~spd~~~l~~~ 504 (514)
...+..+... .+. .+...... ..+.|||++++++..
T Consensus 302 ~~p~~r~lY~v~~~~~~~~~-------~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 302 DNPGERHLYRVSLDSGGEPK-------CLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp GGTTSBEEEEEETTETTEEE-------ESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred CCCCceEEEEEEeCCCCCeE-------eccCCCCCceEEEECCCCCEEEEE
Confidence 2344332222 111 11122222 699999999998844
No 318
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.16 E-value=0.00064 Score=64.77 Aligned_cols=169 Identities=14% Similarity=0.160 Sum_probs=105.1
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
.|...|.--+++..+++++.|+.-|.+++|+..+++.. .....+-.
T Consensus 31 ~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~----------------------~~~~~~~~------------ 76 (726)
T KOG3621|consen 31 FFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR----------------------KLKNEGAT------------ 76 (726)
T ss_pred cCcceEEEEEeecCCceEEEecccceEEEEecCchhhh----------------------cccccCcc------------
Confidence 45667777777888999999999999999998776532 11111111
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..+..+.. +.+..++|.|+..|.|.++-+..+.......
T Consensus 77 ~~~~~~~v--s~~e~lvAagt~~g~V~v~ql~~~~p~~~~~--------------------------------------- 115 (726)
T KOG3621|consen 77 GITCVRSV--SSVEYLVAAGTASGRVSVFQLNKELPRDLDY--------------------------------------- 115 (726)
T ss_pred ceEEEEEe--cchhHhhhhhcCCceEEeehhhccCCCccee---------------------------------------
Confidence 33444444 4555677788889999998776532100000
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+ .. .-..|...|++++|++++..+.+| ..|+|.+-.+... ..+.
T Consensus 116 ------~--------------t~------------~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~-~~~~-- 160 (726)
T KOG3621|consen 116 ------V--------------TP------------CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR-QAFL-- 160 (726)
T ss_pred ------e--------------cc------------ccccCCceEEEEEecccccEEeecCCCceEEEEEechh-hhhc--
Confidence 0 00 013478899999999999999999 8999999888752 1111
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCc
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 316 (514)
.+.+.+....+.|..+.+... .+|++... .-.+++++.+.
T Consensus 161 -~~~q~il~~ds~IVQlD~~q~--~LLVStl~--r~~Lc~tE~et 200 (726)
T KOG3621|consen 161 -SKSQEILSEDSEIVQLDYLQS--YLLVSTLT--RCILCQTEAET 200 (726)
T ss_pred -cccceeeccCcceEEeecccc--eehHhhhh--hhheeecchhH
Confidence 111233345677777777643 34443332 22455655443
No 319
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=0.00045 Score=61.17 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=31.4
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEe
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVF 152 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~ 152 (514)
..|..++|+|...| ++..++.+++|+|.|+++.......
T Consensus 194 ~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~~~vssy 232 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETSCVVSSY 232 (463)
T ss_pred hhhhhhccCccccc-eeeeeccCceEEEEecccceeeehe
Confidence 67999999876654 7888999999999999987654433
No 320
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.12 E-value=0.0019 Score=61.32 Aligned_cols=136 Identities=10% Similarity=0.013 Sum_probs=77.6
Q ss_pred CCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccc
Q 010256 245 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (514)
Q Consensus 245 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 324 (514)
+..++.+.++.+..+|..+++...+. .+. ....+.. .+ ..++.++.+|.+..+|..+++..++...
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~W~~------~~~----~~~~~~~--~~-~~vy~~~~~g~l~ald~~tG~~~W~~~~- 322 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIVWKR------EYG----SVNDFAV--DG-GRIYLVDQNDRVYALDTRGGVELWSQSD- 322 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEEEee------cCC----CccCcEE--EC-CEEEEEcCCCeEEEEECCCCcEEEcccc-
Confidence 43444448899999999877654432 111 1112222 33 4677788899999999999876543111
Q ss_pred eeccCCCCccceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceee
Q 010256 325 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
... ....+.... ++ .|+.+ .+|.|.+.|..+ ++.+........... .+
T Consensus 323 ~~~--------------~~~~sp~v~-~g-~l~v~~~~G~l~~ld~~t-G~~~~~~~~~~~~~~--------------s~ 371 (394)
T PRK11138 323 LLH--------------RLLTAPVLY-NG-YLVVGDSEGYLHWINRED-GRFVAQQKVDSSGFL--------------SE 371 (394)
T ss_pred cCC--------------CcccCCEEE-CC-EEEEEeCCCEEEEEECCC-CCEEEEEEcCCCcce--------------eC
Confidence 000 011112221 34 45555 459999999987 777766544321100 01
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEec
Q 010256 404 CCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 404 ~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
..+ .+..|+.++.||.|+.++.
T Consensus 372 P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 372 PVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CEE--ECCEEEEEeCCceEEEEeC
Confidence 222 2446778899999988764
No 321
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.11 E-value=1.2e-06 Score=81.43 Aligned_cols=193 Identities=13% Similarity=0.151 Sum_probs=123.4
Q ss_pred ccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-c----CCeEEEEeccCCCceeeee
Q 010256 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-D----DLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~----d~~i~iwd~~~~~~~~~~~ 271 (514)
++.|..+|.|.+-. ...... ....+..++....++++|++ |.+.||+| + |..+.|||+.+.-....
T Consensus 73 lavG~atG~I~l~s-~r~~hd-----Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPk-- 144 (783)
T KOG1008|consen 73 LAVGSATGNISLLS-VRHPHD-----SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPK-- 144 (783)
T ss_pred hhhccccCceEEee-cCCccc-----ccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCc--
Confidence 37888889888755 222221 12233467788899999988 56788887 3 78899999985521100
Q ss_pred ccCCCcccc-cCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 272 DVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 272 ~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
....+.+ ......+++|..+. +++.+|...+.++++|+|..... ...+. +..+..+..+
T Consensus 145 --e~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~---~~svn--------------Tk~vqG~tVd 204 (783)
T KOG1008|consen 145 --ESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDS---VSSVN--------------TKYVQGITVD 204 (783)
T ss_pred --cccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhh---hhhhh--------------hhhcccceec
Confidence 0011222 33445588898777 88899999999999999854321 11111 1256778888
Q ss_pred c-CCCEEEEEeCCeEEEEE-ccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC-EEEEEe-CCCcEEEEe
Q 010256 351 R-NGRHILSRDYMTLKLWD-INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGS-YSNLFRVFG 426 (514)
Q Consensus 351 ~-~g~~l~~~~~~~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~i~iwd 426 (514)
| .+.++++-.++.|.+|| ...-..++..+...+...+ + .++.++|.|... ++++.. ..+.|+++|
T Consensus 205 p~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~--------~---~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 205 PFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKP--------K---QLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred CCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcc--------c---ceeeEEeccCCcchhhhhccCcceEEEec
Confidence 8 78899988899999999 4433444444433332111 1 244899998643 344444 557899999
Q ss_pred cCC
Q 010256 427 CSE 429 (514)
Q Consensus 427 ~~~ 429 (514)
+..
T Consensus 274 i~~ 276 (783)
T KOG1008|consen 274 ICV 276 (783)
T ss_pred ccc
Confidence 853
No 322
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.09 E-value=0.0049 Score=53.22 Aligned_cols=128 Identities=10% Similarity=0.147 Sum_probs=64.1
Q ss_pred CccCeEEEEECCCCCEEEEe-cCCeEEEEeccC--CCceeeeeccCC-CcccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010256 232 HDYHINSISNNSDGETFISA-DDLRINLWNLEI--SNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 232 h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~--~~~~~~~~~~~~-~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 307 (514)
+...+-.++|++.++.|+.+ ...-..+|.+.. ............ .........+.++.++|..+++++....+..|
T Consensus 116 ~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l 195 (248)
T PF06977_consen 116 GNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLL 195 (248)
T ss_dssp -SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEE
T ss_pred CCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeE
Confidence 44567889999998888888 666666666653 111111111000 00112334578999999876888888889999
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEE
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLW 367 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iw 367 (514)
..+| .+|+.. ..+...... .-+.......-.|+|.++|.+.+++.-+..++|
T Consensus 196 ~~~d-~~G~~~----~~~~L~~g~---~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 196 LELD-RQGRVV----SSLSLDRGF---HGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EEE--TT--EE----EEEE-STTG---GG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred EEEC-CCCCEE----EEEEeCCcc---cCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 9999 455542 112111100 000001124678999999988877755655554
No 323
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.09 E-value=0.00016 Score=70.12 Aligned_cols=110 Identities=12% Similarity=0.239 Sum_probs=76.8
Q ss_pred eEEEEeeCCCCcEEEEee----CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 116 NKIRWCQSANSALYLLST----NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
+-+.|+|+.+ ++++++ ..|.|.||- ++|++......+. +..+++|.|..-.+
T Consensus 19 ti~SWHPseP--lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~----------------hatSLCWHpe~~vL----- 74 (1416)
T KOG3617|consen 19 TISSWHPSEP--LFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV----------------HATSLCWHPEEFVL----- 74 (1416)
T ss_pred cccccCCCCc--eeEEEEecCCCCceEEEEe-cCCCCCcccccce----------------ehhhhccChHHHHH-----
Confidence 3456877665 777764 457888873 3444322222221 22378999998887
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCC
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~ 264 (514)
+.|-+-|.+.+|. ....+. .+....|..+|..+.|+++|..++++ .-|.+.+|.....
T Consensus 75 -------a~gwe~g~~~v~~-~~~~e~-------htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 75 -------AQGWEMGVSDVQK-TNTTET-------HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred -------hhccccceeEEEe-cCCcee-------eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence 8999999999888 222222 12236789999999999999999999 8999999987633
No 324
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.08 E-value=5.9e-05 Score=70.37 Aligned_cols=83 Identities=14% Similarity=0.266 Sum_probs=65.3
Q ss_pred cCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccc
Q 010256 26 RTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (514)
Q Consensus 26 ~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (514)
+.....++....|.|++++|+.+.|+.|+.||+|.+||...+.. .+....
T Consensus 250 rvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t-------------------------~~~ka~----- 299 (545)
T PF11768_consen 250 RVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT-------------------------LLAKAE----- 299 (545)
T ss_pred EEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee-------------------------eeeeec-----
Confidence 34445678899999999999999999999999999999765432 111111
Q ss_pred ccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccE
Q 010256 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK 147 (514)
Q Consensus 106 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 147 (514)
-..+.++|+ ++|..+++|+..|.+.+||+.-..
T Consensus 300 -------~~P~~iaWH--p~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 300 -------FIPTLIAWH--PDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred -------ccceEEEEc--CCCcEEEEEcCCceEEEEEeecCc
Confidence 347889994 577799999999999999987554
No 325
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.08 E-value=0.00012 Score=68.70 Aligned_cols=185 Identities=16% Similarity=0.172 Sum_probs=109.2
Q ss_pred ccCeEEEEECCCCCEEEEe--c--C-CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCe-
Q 010256 233 DYHINSISNNSDGETFISA--D--D-LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS- 306 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~--~--d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~- 306 (514)
...+..-+|+|+++.++.. . . ..+.++++++++..... ++ ...-...+|+|||..++++...||.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------~~---~g~~~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------NF---NGNNGAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee------cc---CCccCCccCCCCCCEEEEEECCCCCc
Confidence 3456677899999887754 2 2 35999999876654322 22 2333456899999666677777876
Q ss_pred -EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeecc
Q 010256 307 -IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHE 383 (514)
Q Consensus 307 -i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~ 383 (514)
|.++|+.++... + +.. -.+.-..-.|+|||+.++-.+| |.-.||-+..++.....+....
T Consensus 263 ~iy~~dl~~~~~~----~-Lt~------------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~ 325 (425)
T COG0823 263 DIYLMDLDGKNLP----R-LTN------------GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG 325 (425)
T ss_pred cEEEEcCCCCcce----e-ccc------------CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence 455566655421 1 111 1122235679999999998655 5555555544455555554433
Q ss_pred ccccccccccccCCccceeeEEEcCCCCEEEEEeC-CCc--EEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecC
Q 010256 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNL--FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS 460 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s 460 (514)
.... .-.|+|||++|+..+. +|. |.+.|+.++... ..+ .+........+.++++.+...+
T Consensus 326 ~~~~---------------~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~-~~l-t~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 326 GGNS---------------NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKI-RIL-TSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCCc---------------CccCCCCCCEEEEEeccCCceeeEEeccCCCCcE-EEc-cccccCCCCCcCCCCceEEEec
Confidence 3211 4679999999987664 344 667777665421 111 1222233445667776665544
No 326
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.05 E-value=0.0018 Score=56.69 Aligned_cols=144 Identities=13% Similarity=0.120 Sum_probs=83.6
Q ss_pred cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCC
Q 010256 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (514)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 331 (514)
++|+|..||.++++...+. .+............. ++ ..+++++.++.+..||..+|+..++ ++...
T Consensus 1 ~~g~l~~~d~~tG~~~W~~------~~~~~~~~~~~~~~~-~~-~~v~~~~~~~~l~~~d~~tG~~~W~----~~~~~-- 66 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSY------DLGPGIGGPVATAVP-DG-GRVYVASGDGNLYALDAKTGKVLWR----FDLPG-- 66 (238)
T ss_dssp -TSEEEEEETTTTEEEEEE------ECSSSCSSEEETEEE-ET-TEEEEEETTSEEEEEETTTSEEEEE----EECSS--
T ss_pred CCCEEEEEECCCCCEEEEE------ECCCCCCCccceEEE-eC-CEEEEEcCCCEEEEEECCCCCEEEE----eeccc--
Confidence 4789999999877766543 121111222222232 34 4677778999999999999987533 22111
Q ss_pred CccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeee-eeccccccccccccccCCccceeeEEEcCCC
Q 010256 332 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (514)
Q Consensus 332 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (514)
.+.......++..++...++.+..+|..+ ++.+... ........ . ........++
T Consensus 67 -----------~~~~~~~~~~~~v~v~~~~~~l~~~d~~t-G~~~W~~~~~~~~~~~----------~--~~~~~~~~~~ 122 (238)
T PF13360_consen 67 -----------PISGAPVVDGGRVYVGTSDGSLYALDAKT-GKVLWSIYLTSSPPAG----------V--RSSSSPAVDG 122 (238)
T ss_dssp -----------CGGSGEEEETTEEEEEETTSEEEEEETTT-SCEEEEEEE-SSCTCS----------T--B--SEEEEET
T ss_pred -----------cccceeeecccccccccceeeeEecccCC-cceeeeeccccccccc----------c--ccccCceEec
Confidence 11111122344444445568999999887 8877763 33211100 0 0022233347
Q ss_pred CEEEEEeCCCcEEEEecCCCcee
Q 010256 411 GRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 411 ~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
..++.+..++.|..+|+++|+.+
T Consensus 123 ~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 123 DRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp TEEEEEETCSEEEEEETTTTEEE
T ss_pred CEEEEEeccCcEEEEecCCCcEE
Confidence 78888888999999999998543
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.01 E-value=0.0012 Score=63.45 Aligned_cols=101 Identities=11% Similarity=0.105 Sum_probs=67.5
Q ss_pred ceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCc------------eeeeeeccccccccccccccCCccceeeEEEcC
Q 010256 343 SISDIKFARNGRHILSRDY--MTLKLWDINMDSGP------------VATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (514)
....++++|||+++++++. .+|.|.|+.+ .+. ........++ ...+|++
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k-~k~~~~~~~~~~~~vvaevevGlGP----------------LHTaFDg 384 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRK-LDDLFDGKIKPRDAVVAEPELGLGP----------------LHTAFDG 384 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChh-hhhhhhccCCccceEEEeeccCCCc----------------ceEEECC
Confidence 5678999999999998653 8999999986 221 1111111111 1578999
Q ss_pred CCCEEEEEeCCCcEEEEecCC------Cc---eeeeeecCCCcceeEE-----EECCCCCceeecC
Q 010256 409 DGGRVATGSYSNLFRVFGCSE------GS---AESTTLEASKNPMRRQ-----VQTPSRPSRPLGS 460 (514)
Q Consensus 409 ~~~~l~s~~~dg~i~iwd~~~------~~---~~~~~~~~~~~~v~~~-----~~~~~~~~l~s~s 460 (514)
+|+.+.|---|..|-.|++.. |. .....+..|..+-.-. .-.|+|+||++..
T Consensus 385 ~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 385 RGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred CCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 999888888999999999875 11 2334444444443222 2378999998874
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00047 Score=61.04 Aligned_cols=79 Identities=9% Similarity=0.207 Sum_probs=62.6
Q ss_pred cccccceEEEEEcCCCC-eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 32 VQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..|...|..++|||..+ +|..++.+..|+|.|+.+.-. ...+..|
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-----------------------vssy~a~----------- 235 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-----------------------VSSYIAY----------- 235 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEeccccee-----------------------eeheecc-----------
Confidence 36788999999999777 788899999999999986653 2334444
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccE
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK 147 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 147 (514)
..+.+.+|.-.. ..++++|-.+|.|.+||++..+
T Consensus 236 --~~~wSC~wDlde-~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 236 --NQIWSCCWDLDE-RHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred --CCceeeeeccCC-cceeEEeccCceEEEEEccCCC
Confidence 559999997433 5688889999999999998653
No 329
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=98.00 E-value=0.0083 Score=55.81 Aligned_cols=95 Identities=12% Similarity=-0.002 Sum_probs=54.5
Q ss_pred eccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccc--eeeEEEcC-CCCEE
Q 010256 338 TEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD--KFECCLSG-DGGRV 413 (514)
Q Consensus 338 ~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~-~~~~l 413 (514)
......+.++..+|++++.++.+. |+|.++|+.. +..++.+++.....-..........-.. .....-.+ ...+|
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 334456889999999998888766 9999999997 7777777765543110000000000000 00000000 01233
Q ss_pred -EEEeCCCcEEEEecCCCcee
Q 010256 414 -ATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 414 -~s~~~dg~i~iwd~~~~~~~ 433 (514)
+-+-.-|.|.||.++.+.+.
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred EEEeccCCeEEEEecCCCCEE
Confidence 34567799999999988443
No 330
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.00 E-value=0.00016 Score=70.69 Aligned_cols=180 Identities=17% Similarity=0.156 Sum_probs=119.2
Q ss_pred cEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCC
Q 010256 296 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG 374 (514)
Q Consensus 296 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~ 374 (514)
..++.|+....+..+|+++.+.. +..+... +.+. -+..+++++.+|+. |+|.+-|.++ .+
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~----r~~~v~a------------~~v~--imR~Nnr~lf~G~t~G~V~LrD~~s-~~ 208 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKET----RTTNVSA------------SGVT--IMRYNNRNLFCGDTRGTVFLRDPNS-FE 208 (1118)
T ss_pred cceeecchhhheeeeecccceee----eeeeccC------------CceE--EEEecCcEEEeecccceEEeecCCc-Cc
Confidence 45677777778888999887652 2222111 1233 33456899999976 9999999998 99
Q ss_pred ceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC---------CcEEEEecCCCceeeeeecCCCccee
Q 010256 375 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---------NLFRVFGCSEGSAESTTLEASKNPMR 445 (514)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~v~ 445 (514)
.++++..|.+.+ .+|+-.|++|++++.. .-|+|||++..+.+ ..+.-+.++ .
T Consensus 209 ~iht~~aHs~si-----------------SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral-~PI~~~~~P-~ 269 (1118)
T KOG1275|consen 209 TIHTFDAHSGSI-----------------SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL-SPIQFPYGP-Q 269 (1118)
T ss_pred eeeeeeccccce-----------------eeeeccCCeEEEeecccccccccccchhhhhhhhhhhcc-CCcccccCc-h
Confidence 999999998763 4677789999998764 45789999876333 333333333 2
Q ss_pred EEEECCCC-CceeecCCCCeEEEeeCCCCCccccCCccc-ccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 446 RQVQTPSR-PSRPLGSLSGVVRRVKGADNSALDANGNAF-DFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 446 ~~~~~~~~-~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
-+.|.|.- ..++.+|..|.+.+.+...+.......... .....+..+++|+++..||.+. ++.+-+|.
T Consensus 270 flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 270 FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred hhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 34555653 356777788888884422222111111111 2345699999999999999887 66777774
No 331
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.98 E-value=0.00045 Score=64.95 Aligned_cols=185 Identities=16% Similarity=0.157 Sum_probs=103.7
Q ss_pred CCceEEEEEecCCCcEEEEEe-c--C-CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEE
Q 010256 282 TEVITSAEFHPTHCNMLAYSS-S--K-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 357 (514)
Q Consensus 282 ~~~i~~v~~~p~~~~~l~~~~-~--d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 357 (514)
...+..-+|+|++ ..++..+ . . ..+.++|+.+++... +..+. +.-...+|+|||+.|+
T Consensus 192 ~~~~~~p~ws~~~-~~~~y~~f~~~~~~~i~~~~l~~g~~~~--i~~~~---------------g~~~~P~fspDG~~l~ 253 (425)
T COG0823 192 GSLILTPAWSPDG-KKLAYVSFELGGCPRIYYLDLNTGKRPV--ILNFN---------------GNNGAPAFSPDGSKLA 253 (425)
T ss_pred CcceeccccCcCC-CceEEEEEecCCCceEEEEeccCCccce--eeccC---------------CccCCccCCCCCCEEE
Confidence 4556677899998 4444332 2 2 358889998876421 11111 2334568999999998
Q ss_pred EEe--C--CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe-CCCc--EEEEecCCC
Q 010256 358 SRD--Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNL--FRVFGCSEG 430 (514)
Q Consensus 358 ~~~--~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~--i~iwd~~~~ 430 (514)
-.. + -.|.++|+.. +.+..+....+... .-.|+|||++|+..+ ..|+ |.+++++.+
T Consensus 254 f~~~rdg~~~iy~~dl~~--~~~~~Lt~~~gi~~---------------~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 254 FSSSRDGSPDIYLMDLDG--KNLPRLTNGFGINT---------------SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred EEECCCCCccEEEEcCCC--CcceecccCCcccc---------------CccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence 743 3 4566677764 33333433322211 467999999988665 3444 666677655
Q ss_pred ceeeeeecCCCcceeEEEECCCCCceeecCCC-CeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 431 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLS-GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d-~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
.....+..+.... ...++|||++++..+.. |...+... .+..... ...+..........|.|+++.|...+
T Consensus 317 ~~~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~-~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 317 QVTRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKN-DLASGGK-IRILTSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred ceeEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEe-ccCCCCc-EEEccccccCCCCCcCCCCceEEEec
Confidence 4433444433333 67889999999888743 33333000 0000000 01112234445667888888777444
No 332
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.95 E-value=0.004 Score=58.90 Aligned_cols=165 Identities=12% Similarity=0.085 Sum_probs=93.4
Q ss_pred ccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEE-E
Q 010256 233 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI-D 311 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~w-d 311 (514)
......+.++|+|+.++.+.||.-.++.....+.. ..+.-...+|.+.+ .+|+-...+.|.++ +
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k-------------~~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNK-------------AFGSGLSFVWSSRN--RYAVLESSSTIKIYKN 96 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEE-------------EEEE-SEEEE-TSS--EEEEE-TTS-EEEEET
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccc-------------ccCceeEEEEecCc--cEEEEECCCeEEEEEc
Confidence 34578899999999999999999999984322211 13445678899954 67777778899996 3
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeecccccccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
+.. .. .+.+... ..+..+-. |.+|...+++.|.+||+.+ ++.+..+....
T Consensus 97 ~~~-~~----~k~i~~~-------------~~~~~If~---G~LL~~~~~~~i~~yDw~~-~~~i~~i~v~~-------- 146 (443)
T PF04053_consen 97 FKN-EV----VKSIKLP-------------FSVEKIFG---GNLLGVKSSDFICFYDWET-GKLIRRIDVSA-------- 146 (443)
T ss_dssp TEE--T----T-----S-------------S-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEESS-E--------
T ss_pred Ccc-cc----ceEEcCC-------------cccceEEc---CcEEEEECCCCEEEEEhhH-cceeeEEecCC--------
Confidence 322 11 1122211 11222222 8888888777899999997 88888876443
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC---------ce-eeeeecCCCcceeEEEECCC
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG---------SA-ESTTLEASKNPMRRQVQTPS 452 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---------~~-~~~~~~~~~~~v~~~~~~~~ 452 (514)
|..+.|+++|++++..+.+ .++|++.... -. ....+..-...|.+.+|..+
T Consensus 147 ---------vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 147 ---------VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp ----------EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred ---------CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence 2279999999999988765 6777775422 00 12333333567778888666
No 333
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0024 Score=62.43 Aligned_cols=202 Identities=9% Similarity=0.046 Sum_probs=114.3
Q ss_pred eeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccC-eEEEEECCCCCEEEE-e-cCC
Q 010256 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH-INSISNNSDGETFIS-A-DDL 254 (514)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s-~-~d~ 254 (514)
+|++.+..+ +.|+.+|.|.+.+ ... +..+. ...+... |..+-...+..+|++ | +++
T Consensus 30 c~~s~~~~v------------vigt~~G~V~~Ln----~s~----~~~~~-fqa~~~siv~~L~~~~~~~~L~sv~Ed~~ 88 (933)
T KOG2114|consen 30 CCSSSTGSV------------VIGTADGRVVILN----SSF----QLIRG-FQAYEQSIVQFLYILNKQNFLFSVGEDEQ 88 (933)
T ss_pred EEcCCCceE------------EEeeccccEEEec----ccc----eeeeh-heecchhhhhHhhcccCceEEEEEeecCC
Confidence 566666666 8899999988766 110 01011 1344444 444433344456666 4 444
Q ss_pred ----eEEEEeccCCC-----ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccce
Q 010256 255 ----RINLWNLEISN-----QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (514)
Q Consensus 255 ----~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 325 (514)
.+++|+++..+ ++.....+-+........++.+++.+.+- +.+|+|-.+|.|..+.=.-.. ++..+.-
T Consensus 89 ~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~R--Drgsr~~ 165 (933)
T KOG2114|consen 89 GNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILR--DRGSRQD 165 (933)
T ss_pred CCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchh--cccccee
Confidence 69999997542 12211111111222346778899999987 899999999999887422111 0001110
Q ss_pred eccCCCCccceeeccccceeEEEEecCCCE-EEEEeCCeEEEEEccCCCCceee-eeeccccccccccccccCCccceee
Q 010256 326 EEQEAPGTRSFFTEIIASISDIKFARNGRH-ILSRDYMTLKLWDINMDSGPVAT-FQVHEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
- ...-..+|+.+++..+++. +.++.-..|.+|.+.. ..+... +..+... ..+
T Consensus 166 ~----------~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~~~~ld~~G~~---------------lnC 219 (933)
T KOG2114|consen 166 Y----------SHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RTPSLKVLDNNGIS---------------LNC 219 (933)
T ss_pred e----------eccCCCCceeeEEecCCceeEEEEecceeEEEEecC-CCcceeeeccCCcc---------------cee
Confidence 0 1112368999999998887 4445556899999984 333332 3333322 226
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 404 CCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 404 ~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
..+++....+++++. ..+.+|+....
T Consensus 220 ss~~~~t~qfIca~~-e~l~fY~sd~~ 245 (933)
T KOG2114|consen 220 SSFSDGTYQFICAGS-EFLYFYDSDGR 245 (933)
T ss_pred eecCCCCccEEEecC-ceEEEEcCCCc
Confidence 677765553444433 47999998743
No 334
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.00027 Score=68.55 Aligned_cols=107 Identities=15% Similarity=0.221 Sum_probs=79.3
Q ss_pred EEEECCCCCEEEEe-----cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 238 SISNNSDGETFISA-----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 238 ~~~~~~~~~~l~s~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
-.+|+|...+++.+ ..|.|.||- +++++... ....-.+++++|+|.. -.|+.|-.-|.+.+|..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~---------Vt~P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRD---------VTYPVHATSLCWHPEE-FVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcc---------cccceehhhhccChHH-HHHhhccccceeEEEec
Confidence 35699998888875 378898884 33443221 1123345789999987 78889999999999997
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccC
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM 371 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~ 371 (514)
.+.+. .+ ....|..+|..+.||++|..+++++. |.|.+|....
T Consensus 89 ~~~e~-----ht-----------v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 89 NTTET-----HT-----------VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred CCcee-----ee-----------eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 66442 11 12346689999999999999999988 9999998763
No 335
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.91 E-value=2.7e-05 Score=72.83 Aligned_cols=210 Identities=12% Similarity=0.100 Sum_probs=120.5
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCC-CccccccC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG-GCGERNFG 191 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~l~~~~~ 191 (514)
..+.|+++....+..++++|..+|.|-+-.++...-.... .+-.....|.+++|.+-. +.|
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E-------------~tp~~ar~Ct~lAwneLDtn~L----- 118 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAE-------------VTPGYARPCTSLAWNELDTNHL----- 118 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccce-------------ecccccccccccccccccHHHH-----
Confidence 4477777765555567888999999999887764322000 000111234467777643 333
Q ss_pred CCCCCcccCCC----CCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCc
Q 010256 192 CASNDSSFPPG----GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (514)
Q Consensus 192 ~~~~~~~~~~~----~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 266 (514)
+.|- .+..+.|||+..... .+. ....+..+--....+++|..+.+++.+| ....+.++|++....
T Consensus 119 -------Aagldkhrnds~~~Iwdi~s~lt-vPk--e~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~ 188 (783)
T KOG1008|consen 119 -------AAGLDKHRNDSSLKIWDINSLLT-VPK--ESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD 188 (783)
T ss_pred -------HhhhhhhcccCCccceecccccC-CCc--cccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh
Confidence 4432 457899999422211 111 1111112233455689999899999999 888999999983321
Q ss_pred eeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE-cCCCccccccccceeccCCCCccceeecccccee
Q 010256 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID-MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (514)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (514)
.... -....+..+...|-.++++++-. ||.|-+|| .++-+.. +......+.+.+ ..+.
T Consensus 189 ~~~s---------vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienp---l~~i~~~~N~~~--------~~l~ 247 (783)
T KOG1008|consen 189 SVSS---------VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENP---LQIILRNENKKP--------KQLF 247 (783)
T ss_pred hhhh---------hhhhhcccceecCCCCCceeccc-cCceeeccchhhhccH---HHHHhhCCCCcc--------ccee
Confidence 1111 12335667778884446776554 99999999 4432211 222211111100 2488
Q ss_pred EEEEecCCC--EEEEEeC-CeEEEEEccC
Q 010256 346 DIKFARNGR--HILSRDY-MTLKLWDINM 371 (514)
Q Consensus 346 ~~~~s~~g~--~l~~~~~-~~i~iwd~~~ 371 (514)
.++|+|... ..+...+ ++|+++|+..
T Consensus 248 ~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 248 ALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred eEEeccCCcchhhhhccCcceEEEecccc
Confidence 899999533 3333344 9999999874
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.88 E-value=0.012 Score=57.07 Aligned_cols=64 Identities=11% Similarity=-0.043 Sum_probs=44.9
Q ss_pred eEEEcCCCCEEEEEe-CCCcEEEEecCCCce-----------eeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 403 ECCLSGDGGRVATGS-YSNLFRVFGCSEGSA-----------ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 403 ~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+.++|||+++++++ .++.|.|.|+.+.+. .....+--.. ....+|.++|+...|...|..|-.
T Consensus 325 GV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~k 400 (635)
T PRK02888 325 GVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVK 400 (635)
T ss_pred ceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEE
Confidence 789999999977554 689999999987532 1122222222 236688888888888887877666
No 337
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.86 E-value=0.0069 Score=56.55 Aligned_cols=209 Identities=11% Similarity=0.046 Sum_probs=104.4
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCC-cccccCCceEEEEEec-----CC--CcEEEE
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA-NMEDLTEVITSAEFHP-----TH--CNMLAY 300 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~v~~~p-----~~--~~~l~~ 300 (514)
....++|++++.+.-| +++.| .+|.+.+.|++.....+.. .+... ........++++.|.. |+ .-.+++
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 4557999999998555 88888 8999999999855443331 11110 1112356788888862 11 146788
Q ss_pred EecCCeEEEEEcCC-CccccccccceeccCCCCccceeeccccceeEEE-EecC---------------------CCEEE
Q 010256 301 SSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK-FARN---------------------GRHIL 357 (514)
Q Consensus 301 ~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~s~~---------------------g~~l~ 357 (514)
|+..|.+.+|.+.- ..- .....+... ...+.++|..+. |+.+ ..+++
T Consensus 161 GTn~G~v~~fkIlp~~~g--~f~v~~~~~--------~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNG--RFSVQFAGA--------TTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp EETTSEEEEEEEEE-GGG---EEEEEEEE--------E--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred EeCCCCEEEEEEecCCCC--ceEEEEeec--------cccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 99999999998752 110 000011110 011223333333 2111 12566
Q ss_pred EEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE-----cCCCCEEEEEeCCCcEEEEecCCCce
Q 010256 358 SRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL-----SGDGGRVATGSYSNLFRVFGCSEGSA 432 (514)
Q Consensus 358 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~s~~~dg~i~iwd~~~~~~ 432 (514)
+.++..++++...+ .+..+......... ..+++ ...+..|++-..+|.+++|.+..-+.
T Consensus 231 vvSe~~irv~~~~~-~k~~~K~~~~~~~~---------------~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 231 VVSESDIRVFKPPK-SKGAHKSFDDPFLC---------------SSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp EE-SSEEEEE-TT----EEEEE-SS-EEE---------------EEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred EEcccceEEEeCCC-Ccccceeecccccc---------------ceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 67778999998876 54443332111110 12333 23566788888999999999987644
Q ss_pred eeeeecC----CCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 433 ESTTLEA----SKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 433 ~~~~~~~----~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+ ..+.- +........++++|..++-.+..-..++
T Consensus 295 i-~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~ 332 (395)
T PF08596_consen 295 I-KSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLF 332 (395)
T ss_dssp E-EEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEE
T ss_pred h-hcccCCCccccccccccEECCCCCEEEEeCcccEEEE
Confidence 3 23332 2234556777888887766665544444
No 338
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=2.4e-05 Score=75.96 Aligned_cols=145 Identities=18% Similarity=0.200 Sum_probs=107.7
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEE
Q 010256 277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (514)
Q Consensus 277 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 356 (514)
++..+....++++|+-+. +.|+.|+..|.|++|+..+|... .. ...|.++|+.+.-+.+|..+
T Consensus 1096 ~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e----~s------------~ncH~SavT~vePs~dgs~~ 1158 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSME----ES------------VNCHQSAVTLVEPSVDGSTQ 1158 (1516)
T ss_pred hhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCcccc----cc------------ccccccccccccccCCccee
Confidence 566778889999999988 89999999999999999998752 12 34566899999999999988
Q ss_pred EEEeC---CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 357 LSRDY---MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 357 ~~~~~---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
++.+. --..+|++...+.+.+++.... ++.|+..-..-+.|.......+||++++..+
T Consensus 1159 Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed~-------------------~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1159 LTSSSSSSPLSALWDASSTGGPRHSFDEDK-------------------AVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred eeeccccCchHHHhccccccCccccccccc-------------------eeehhhhHHHHHhcccccceEEEecccCcHH
Confidence 87532 3578999987667777776543 6778766555455555567899999998665
Q ss_pred eeeecC---CCcceeEEEECCCCCcee
Q 010256 434 STTLEA---SKNPMRRQVQTPSRPSRP 457 (514)
Q Consensus 434 ~~~~~~---~~~~v~~~~~~~~~~~l~ 457 (514)
...+.+ ....-+...|+|+..+++
T Consensus 1220 ~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1220 QTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HHhcCcchhhhhhccccccCCCcceEe
Confidence 433432 233346678888877664
No 339
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.84 E-value=0.00045 Score=67.68 Aligned_cols=177 Identities=16% Similarity=0.168 Sum_probs=117.5
Q ss_pred CCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccc
Q 010256 245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 323 (514)
Q Consensus 245 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 323 (514)
+..++.| -...+..+|+++.+... .. .. ....+.-++. ++ +.+.+|...|+|.+-|.++.+. ++
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r-~~-----~v--~a~~v~imR~--Nn-r~lf~G~t~G~V~LrD~~s~~~----ih 211 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETR-TT-----NV--SASGVTIMRY--NN-RNLFCGDTRGTVFLRDPNSFET----IH 211 (1118)
T ss_pred Ccceeecchhhheeeeecccceeee-ee-----ec--cCCceEEEEe--cC-cEEEeecccceEEeecCCcCce----ee
Confidence 3344444 55567778888554332 11 11 1223554544 44 7899999999999999988765 33
Q ss_pred ceeccCCCCccceeeccccceeEEEEecCCCEEEEEe----------CCeEEEEEccCCCCceeeeeecccccccccccc
Q 010256 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 393 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
+ +..|.+.|.++.. .|..|++++ |.-|+|||+++ .+.+..+..+.++.
T Consensus 212 t------------~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRm-mral~PI~~~~~P~------- 269 (1118)
T KOG1275|consen 212 T------------FDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRM-MRALSPIQFPYGPQ------- 269 (1118)
T ss_pred e------------eeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhh-hhccCCcccccCch-------
Confidence 3 4556678876655 488888753 23578999998 66666665555431
Q ss_pred ccCCccceeeEEEcCC-CCEEEEEeCCCcEEEEecCCCcee-e--eeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 394 ENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAE-S--TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 394 ~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~-~--~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
-+.|.|. ...++.++..|...+-|..+-... . ..+....+.+.++.+++++..+|.|..+|.|.+
T Consensus 270 ---------flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~ 338 (1118)
T KOG1275|consen 270 ---------FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNL 338 (1118)
T ss_pred ---------hhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEee
Confidence 3566664 345777888899999984332221 1 233334455889999999999999999999999
No 340
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.80 E-value=0.019 Score=49.65 Aligned_cols=177 Identities=16% Similarity=0.179 Sum_probs=82.9
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeec---cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD---VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~ 309 (514)
+..-+|++..++.++++. .++.+.++++.........-. +.......++..+-.++|+|.+ +.|+.+-...-..+
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l 143 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRL 143 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTT-TEEEEEEESSSEEE
T ss_pred CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhh
Confidence 345678887778777777 789999998854332211110 0000112345668999999988 56666677766777
Q ss_pred EEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEE-EEeC-CeEEEEEccCCCCceeeeeecccccc
Q 010256 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL-SRDY-MTLKLWDINMDSGPVATFQVHEHLRP 387 (514)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (514)
|.++..... ............. .......+.+++++|....|+ .++. ..|..+|.. ++++..+....+...
T Consensus 144 ~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~L~~g~~g 216 (248)
T PF06977_consen 144 YEVNGFPGG-FDLFVSDDQDLDD----DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLSLDRGFHG 216 (248)
T ss_dssp EEEESTT-S-S--EEEE-HHHH-----HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG
T ss_pred EEEccccCc-cceeecccccccc----ccceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEEeCCcccC
Confidence 777541100 0000000000000 011224578899999654444 4444 888889854 777776655442110
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEE
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (514)
....+ ..--.++|.++|++.++ +.-+..++|
T Consensus 217 l~~~~------~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 217 LSKDI------PQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp -SS---------SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ccccc------CCccEEEECCCCCEEEE-cCCceEEEe
Confidence 00000 01127999999986665 455666665
No 341
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.78 E-value=0.018 Score=54.50 Aligned_cols=179 Identities=16% Similarity=0.093 Sum_probs=89.1
Q ss_pred eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCcc
Q 010256 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (514)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 334 (514)
.|.+|+.. ++....+ .+. .+.+.++.|+.+. .|++-..||.+++||+.... .+......
T Consensus 62 ~I~iys~s-G~ll~~i------~w~--~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~-------~fsl~~~i--- 120 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSI------PWD--SGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEF-------QFSLGEEI--- 120 (410)
T ss_pred EEEEECCC-CCEeEEE------EEC--CCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCce-------eechhhhc---
Confidence 58888876 4443332 233 2789999999875 56667799999999986432 01100000
Q ss_pred ceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCce--eeeeeccccccccccccccCCccceeeEEEcCCCCE
Q 010256 335 SFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (514)
Q Consensus 335 ~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 412 (514)
....-....+....+..+|-.+++++ +.+.+.+-- .++. ..+. .. ...............+ ..++.+...
T Consensus 121 ~~~~v~e~~i~~~~~~~~GivvLt~~-~~~~~v~n~--~~~~~~~~~~--~~-p~~~~~~~~~~~~~~i--~~l~~~~~~ 192 (410)
T PF04841_consen 121 EEEKVLECRIFAIWFYKNGIVVLTGN-NRFYVVNNI--DEPVKLRRLP--EI-PGLWTKFHWWPSWTVI--PLLSSDRVV 192 (410)
T ss_pred cccCcccccccccccCCCCEEEECCC-CeEEEEeCc--cccchhhccc--cC-CCcccccccccccccc--eEeecCcce
Confidence 00000112233334444564444433 333332211 1111 1111 00 0000000000000001 234555555
Q ss_pred EEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 413 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 413 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+....++.+++.+...... +. ..+++..+++||+++++|.-..+|.+.+
T Consensus 193 ~i~~~~g~~i~~i~~~~~~~----i~-~~~~i~~iavSpng~~iAl~t~~g~l~v 242 (410)
T PF04841_consen 193 EILLANGETIYIIDENSFKQ----ID-SDGPIIKIAVSPNGKFIALFTDSGNLWV 242 (410)
T ss_pred EEEEecCCEEEEEEcccccc----cc-CCCCeEEEEECCCCCEEEEEECCCCEEE
Confidence 55555566666444332111 11 2457899999999999999999999888
No 342
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.75 E-value=0.041 Score=52.12 Aligned_cols=56 Identities=13% Similarity=0.066 Sum_probs=38.8
Q ss_pred eeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC-CcceeEEEECCCCCcee
Q 010256 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRP 457 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~ 457 (514)
+..+++||+|++||.-..+|.+.+....-.+.. ..+... .....++.|..+.-.++
T Consensus 219 i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~-~e~~~~~~~~p~~~~WCG~dav~l 275 (410)
T PF04841_consen 219 IIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKL-CEFDTDSKSPPKQMAWCGNDAVVL 275 (410)
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECccccee-EEeecCcCCCCcEEEEECCCcEEE
Confidence 348999999999999999999999876544332 333332 44567888876644433
No 343
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.00019 Score=68.13 Aligned_cols=108 Identities=12% Similarity=0.123 Sum_probs=82.3
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE--eeCCCCCccccCCc
Q 010256 404 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNSALDANGN 481 (514)
Q Consensus 404 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i--~~~~~~~~~~~~~~ 481 (514)
-+++..+++|+.|+.-|.+++|+-..+..+..+..+....+.....+++..++|.|+..|.|.+ +.. ..........
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~~~t 117 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLDYVT 117 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCcceeec
Confidence 4667789999999999999999998775555555556666777888999999999999999999 222 1111122222
Q ss_pred cc--ccccceEEEEEcCCCCEEEEEecCcEEEE
Q 010256 482 AF--DFSMKLLHLAWHPSENSIACAASNSLYMY 512 (514)
Q Consensus 482 ~~--~~~~~v~~~~~spd~~~l~~~~~~~~~i~ 512 (514)
.. .|...|++++|++|+..+.+|...|.+++
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVL 150 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEE
Confidence 22 36889999999999999999998877664
No 344
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.73 E-value=0.012 Score=54.91 Aligned_cols=278 Identities=13% Similarity=0.208 Sum_probs=131.8
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
...+....|||+|+.+|... ++.|.+++..++... .+...+. ... +.|- + +++-.-++-+.
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~-----~lT~dg~-------~~i---~nG~-~--dwvyeEEv~~~ 102 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET-----QLTTDGE-------PGI---YNGV-P--DWVYEEEVFDR 102 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE-----ESES--T-------TTE---EESB-----HHHHHHTSSS
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE-----Eeccccc-------eeE---EcCc-c--ceecccccccc
Confidence 46789999999999999985 678999988766432 1111110 000 0110 1 12211121133
Q ss_pred eeEEEEeeCCCCcEEEEe-eCCCeEEEEEcCc---c-E---EEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 115 INKIRWCQSANSALYLLS-TNDKTIKLWKVQE---K-K---VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~-~~d~~i~iw~~~~---~-~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
-..+-| ++|+++|+.. -.+..|+.+.+.. . . ........
T Consensus 103 ~~~~~W--Spd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YP------------------------------- 149 (353)
T PF00930_consen 103 RSAVWW--SPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYP------------------------------- 149 (353)
T ss_dssp SBSEEE---TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE---------------------------------
T ss_pred ccceEE--CCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccC-------------------------------
Confidence 466889 6677788876 4455555554321 1 1 11111111
Q ss_pred ccccCCCCCCcccCCCCCCcEEe--ceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe----c--CCeEEE
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRL--PVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA----D--DLRINL 258 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----~--d~~i~i 258 (514)
..|.....+++ ++ +...+......+ .. ...-...+..+.|.++++.|+.. . ...+.+
T Consensus 150 ------------k~G~~np~v~l~v~~-~~~~~~~~~~~~-~~-~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~ 214 (353)
T PF00930_consen 150 ------------KAGDPNPRVSLFVVD-LASGKTTELDPP-NS-LNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVL 214 (353)
T ss_dssp ------------BTTS---EEEEEEEE-SSSTCCCEE----HH-HHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEE
T ss_pred ------------CCCCcCCceEEEEEE-CCCCcEEEeeec-cc-cCCCccCcccceecCCCcEEEEEEcccCCCEEEEEE
Confidence 33344444443 34 221111100000 00 12234567889999999844432 1 334566
Q ss_pred EeccCCCceeeeeccCCCcccccCCceEEEEEe-cCCCcEEEEEecCCeEEEE--EcCCCccccccccceeccCCCCccc
Q 010256 259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSSKGSIRLI--DMRQSALCDTHSKLFEEQEAPGTRS 335 (514)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~-p~~~~~l~~~~~dg~i~~w--d~~~~~~~~~~~~~~~~~~~~~~~~ 335 (514)
.|..++.......... .+--..-....|. +++..++.....+|.-+|| +...+... .
T Consensus 215 ~d~~tg~~~~~~~e~~----~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-----~----------- 274 (353)
T PF00930_consen 215 CDASTGETRVVLEETS----DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-----Q----------- 274 (353)
T ss_dssp EEECTTTCEEEEEEES----SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-----E-----------
T ss_pred EECCCCceeEEEEecC----CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-----c-----------
Confidence 6776544332221111 1111122345554 6765666666677765554 44444311 1
Q ss_pred eeeccccceeE-EEEecCCCEEEE-Ee--C-CeEEEEEccCC-CCceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 336 FFTEIIASISD-IKFARNGRHILS-RD--Y-MTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 336 ~~~~~~~~i~~-~~~s~~g~~l~~-~~--~-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
++...-.|.. +.++++++.|+- +. . ..-.||.+... +..+..+....... ..+.|||+
T Consensus 275 -lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~---------------~~~~~Spd 338 (353)
T PF00930_consen 275 -LTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH---------------YSASFSPD 338 (353)
T ss_dssp -SS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT---------------EEEEE-TT
T ss_pred -cccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc---------------eEEEECCC
Confidence 1112234544 678888776653 43 2 55566666653 45555555443321 27999999
Q ss_pred CCEEEE
Q 010256 410 GGRVAT 415 (514)
Q Consensus 410 ~~~l~s 415 (514)
|++++-
T Consensus 339 g~y~v~ 344 (353)
T PF00930_consen 339 GKYYVD 344 (353)
T ss_dssp SSEEEE
T ss_pred CCEEEE
Confidence 998874
No 345
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.66 E-value=0.013 Score=59.03 Aligned_cols=144 Identities=15% Similarity=0.157 Sum_probs=87.5
Q ss_pred cEEEEE-ecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec------CCCEEEEEeCCeEEEEE
Q 010256 296 NMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR------NGRHILSRDYMTLKLWD 368 (514)
Q Consensus 296 ~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~------~g~~l~~~~~~~i~iwd 368 (514)
++|+.. .....++-.|+..|+. +..|+.+.. .+|..++-.. ..+.++.-++..+..||
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKV----V~eW~~~~~-----------~~v~~~~p~~K~aqlt~e~tflGls~n~lfriD 558 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKV----VEEWKVHDD-----------IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRID 558 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcE----EEEeecCCC-----------cceeEecccccccccCCCceEEEECCCceEEec
Confidence 444433 3457888899999987 455665542 2233332211 12334444668999999
Q ss_pred ccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEE
Q 010256 369 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQV 448 (514)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 448 (514)
.+..+..+..-..+. |..+.- ..+++-+.+| +||.|+.+|.||+||- .+......+.+-..||..+.
T Consensus 559 pR~~~~k~v~~~~k~---------Y~~~~~--Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iD 625 (794)
T PF08553_consen 559 PRLSGNKLVDSQSKQ---------YSSKNN--FSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGID 625 (794)
T ss_pred cCCCCCceeeccccc---------cccCCC--ceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEE
Confidence 987442222111111 111111 2255555444 6999999999999995 34444466778889999999
Q ss_pred ECCCCCceeecCCCCeEEE
Q 010256 449 QTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 449 ~~~~~~~l~s~s~d~~v~i 467 (514)
.+.||+||+..+...-+-+
T Consensus 626 vt~DGkwilaTc~tyLlLi 644 (794)
T PF08553_consen 626 VTADGKWILATCKTYLLLI 644 (794)
T ss_pred ecCCCcEEEEeecceEEEE
Confidence 9999999877665554444
No 346
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.66 E-value=0.085 Score=53.17 Aligned_cols=227 Identities=11% Similarity=0.098 Sum_probs=126.9
Q ss_pred CCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC--------------eEEEE
Q 010256 245 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--------------SIRLI 310 (514)
Q Consensus 245 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg--------------~i~~w 310 (514)
...++++..+.+++..++.-++... ++. ......+.+++.+.. ..+.+.+... .++++
T Consensus 684 ~d~l~~~~~~~l~i~tid~iqkl~i------rtv-pl~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vl 755 (1096)
T KOG1897|consen 684 PDSLASANGGALTIGTIDEIQKLHI------RTV-PLGESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVL 755 (1096)
T ss_pred CceEEEecCCceEEEEecchhhcce------eee-cCCCChhheEecccc-eEEEEEecccccchhhcCCcceEEEEEEe
Confidence 4567777788888887764333211 121 124456777777743 4444443321 24555
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecC-CCEEEEEe----------C-CeEEEEEccCCCCceee
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRD----------Y-MTLKLWDINMDSGPVAT 378 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~----------~-~~i~iwd~~~~~~~~~~ 378 (514)
|-.+.+. +..++... .+-...|.++.|..| +.+++.|. . |.|.||.+.. .+.+..
T Consensus 756 D~nTf~v-------l~~hef~~-----~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~ 822 (1096)
T KOG1897|consen 756 DQNTFEV-------LSSHEFER-----NETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLEL 822 (1096)
T ss_pred cCCceeE-------Eeeccccc-----cceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceee
Confidence 5554332 11111100 001135667778877 67777653 2 7888888775 444444
Q ss_pred eeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceee
Q 010256 379 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 458 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 458 (514)
...+.-.. . +.++.. -+|++||. -...|++|+..+. +....-..+..++..+...-.+..++.
T Consensus 823 v~e~~v~G----------a---v~aL~~-fngkllA~--In~~vrLye~t~~-~eLr~e~~~~~~~~aL~l~v~gdeI~V 885 (1096)
T KOG1897|consen 823 VAETVVKG----------A---VYALVE-FNGKLLAG--INQSVRLYEWTTE-RELRIECNISNPIIALDLQVKGDEIAV 885 (1096)
T ss_pred eeeeeecc----------c---eeehhh-hCCeEEEe--cCcEEEEEEcccc-ceehhhhcccCCeEEEEEEecCcEEEE
Confidence 43322110 0 112221 26777774 4468999999876 333555678888999999999999999
Q ss_pred cCCCCeEEE--eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEE
Q 010256 459 GSLSGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYM 511 (514)
Q Consensus 459 ~s~d~~v~i--~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i 511 (514)
|..=+.+.+ +++.+-.-.+...++ +...++++++-.+.+++.+-...++++
T Consensus 886 gDlm~Sitll~y~~~eg~f~evArD~--~p~Wmtaveil~~d~ylgae~~gNlf~ 938 (1096)
T KOG1897|consen 886 GDLMRSITLLQYKGDEGNFEEVARDY--NPNWMTAVEILDDDTYLGAENSGNLFT 938 (1096)
T ss_pred eeccceEEEEEEeccCCceEEeehhh--CccceeeEEEecCceEEeecccccEEE
Confidence 988888887 222221100111111 345677777777777766655555554
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.62 E-value=0.0068 Score=57.41 Aligned_cols=222 Identities=14% Similarity=0.096 Sum_probs=103.8
Q ss_pred cCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-
Q 010256 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 251 (514)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~- 251 (514)
.+..+.++|+|+.+ ++ +.+|.-.++. ... . .....+.-...+|.+.+ .+|+-
T Consensus 34 ~p~~ls~npngr~v------------~V-~g~geY~iyt-~~~---------~---r~k~~G~g~~~vw~~~n-~yAv~~ 86 (443)
T PF04053_consen 34 YPQSLSHNPNGRFV------------LV-CGDGEYEIYT-ALA---------W---RNKAFGSGLSFVWSSRN-RYAVLE 86 (443)
T ss_dssp --SEEEE-TTSSEE------------EE-EETTEEEEEE-TTT---------T---EEEEEEE-SEEEE-TSS-EEEEE-
T ss_pred CCeeEEECCCCCEE------------EE-EcCCEEEEEE-ccC---------C---cccccCceeEEEEecCc-cEEEEE
Confidence 34588999999986 44 5666666554 000 0 01122455678899854 56666
Q ss_pred cCCeEEEE-eccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 252 DDLRINLW-NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 252 ~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
...+|.++ +++ ...... +. ....+..+-. | .+|...+.+ .|.+||..+++.+ +.++.
T Consensus 87 ~~~~I~I~kn~~-~~~~k~--------i~-~~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i----~~i~v--- 144 (443)
T PF04053_consen 87 SSSTIKIYKNFK-NEVVKS--------IK-LPFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKLI----RRIDV--- 144 (443)
T ss_dssp TTS-EEEEETTE-E-TT--------------SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--EE----EEESS---
T ss_pred CCCeEEEEEcCc-cccceE--------Ec-CCcccceEEc---C-cEEEEECCC-CEEEEEhhHccee----eEEec---
Confidence 78889996 443 222111 11 1122333322 6 666655544 8999999998763 33332
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccc-cCCccceeeEEEcCC
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE-NDSIFDKFECCLSGD 409 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~ 409 (514)
.+|..+.|+++|.+++..++..+.|++.+. ..+.. ...++.....+.+++ ... |.+.+|..|
T Consensus 145 -----------~~vk~V~Ws~~g~~val~t~~~i~il~~~~--~~~~~-~~~~g~e~~f~~~~E~~~~---IkSg~W~~d 207 (443)
T PF04053_consen 145 -----------SAVKYVIWSDDGELVALVTKDSIYILKYNL--EAVAA-IPEEGVEDAFELIHEISER---IKSGCWVED 207 (443)
T ss_dssp ------------E-EEEEE-TTSSEEEEE-S-SEEEEEE-H--HHHHH-BTTTB-GGGEEEEEEE-S-----SEEEEETT
T ss_pred -----------CCCcEEEEECCCCEEEEEeCCeEEEEEecc--hhccc-ccccCchhceEEEEEecce---eEEEEEEcC
Confidence 248999999999999998777888888663 10000 000011111111111 111 237788765
Q ss_pred CCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 410 GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 410 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
-++.| +.. +++. +-.|.. .++..-..+++-+...+..+.+.....|+.+..
T Consensus 208 -~fiYt-T~~-~lkY--l~~Ge~--~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~ 258 (443)
T PF04053_consen 208 -CFIYT-TSN-HLKY--LVNGET--GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVIS 258 (443)
T ss_dssp -EEEEE--TT-EEEE--EETTEE--EEEEE-SS--EEEEEETTTTEEEEE-TT--EEE
T ss_pred -EEEEE-cCC-eEEE--EEcCCc--ceEEEcCCceEEEEEEccCCEEEEEECCCCEEE
Confidence 33333 333 6666 333322 233333445666666676566666666655554
No 348
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.60 E-value=0.01 Score=50.57 Aligned_cols=201 Identities=17% Similarity=0.155 Sum_probs=108.8
Q ss_pred eEEEEEecCCCcEEEEEecCCe-EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe---
Q 010256 285 ITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--- 360 (514)
Q Consensus 285 i~~v~~~p~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--- 360 (514)
-..|+|+|..+.-++.+-.-|+ ..++|....+... ++...+ .+-+.+| =.|||||++|++..
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv----~~~s~~----~RHfyGH------Gvfs~dG~~LYATEndf 135 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPV----TLVSQE----GRHFYGH------GVFSPDGRLLYATENDF 135 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcE----EEeccc----Cceeecc------cccCCCCcEEEeecCCC
Confidence 4467788877666666666554 5688988776532 111111 1113334 36899999999841
Q ss_pred ---CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC-------C----------
Q 010256 361 ---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-------N---------- 420 (514)
Q Consensus 361 ---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-------g---------- 420 (514)
.|.|-|||.+.....+..+..|.--. ..+.|.+||+.|+.+... |
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~t~GiGp---------------Hev~lm~DGrtlvvanGGIethpdfgR~~lNldsMe 200 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFSTHGIGP---------------HEVTLMADGRTLVVANGGIETHPDFGRTELNLDSME 200 (366)
T ss_pred CCCCceEEEEecccccceecccccCCcCc---------------ceeEEecCCcEEEEeCCceecccccCccccchhhcC
Confidence 28999999986455556665554321 168899999999876431 1
Q ss_pred -cEEEEecCCCceee-eeec--CCCcceeEEEECCCCCceeecCCCCe-----EEE---eeCCCCCccccCCc-cccccc
Q 010256 421 -LFRVFGCSEGSAES-TTLE--ASKNPMRRQVQTPSRPSRPLGSLSGV-----VRR---VKGADNSALDANGN-AFDFSM 487 (514)
Q Consensus 421 -~i~iwd~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~s~s~d~~-----v~i---~~~~~~~~~~~~~~-~~~~~~ 487 (514)
++-+.|..++..+. .++. -+..+++.+...+|+..++-+-.-|. --+ ..|..+.-..+... ...+..
T Consensus 201 PSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~an 280 (366)
T COG3490 201 PSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFAN 280 (366)
T ss_pred ccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHh
Confidence 12233333332211 2222 33445666666666655543321111 000 11221111111111 112445
Q ss_pred ceEEEEEcCCCCEEEEEe--cCcEEEEeC
Q 010256 488 KLLHLAWHPSENSIACAA--SNSLYMYYA 514 (514)
Q Consensus 488 ~v~~~~~spd~~~l~~~~--~~~~~i~~~ 514 (514)
.|-+++-+.+..+++..+ .|..++|.+
T Consensus 281 YigsiA~n~~~glV~lTSP~GN~~vi~da 309 (366)
T COG3490 281 YIGSIAANRRDGLVALTSPRGNRAVIWDA 309 (366)
T ss_pred hhhheeecccCCeEEEecCCCCeEEEEEc
Confidence 677888887777777555 666777764
No 349
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.60 E-value=0.022 Score=50.87 Aligned_cols=266 Identities=12% Similarity=0.123 Sum_probs=130.6
Q ss_pred cceEEEEEcCCCCeEEEec----------CCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccc
Q 010256 36 DIISAIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (514)
+..-.+..+|||+.+++++ ..-.|.+||..+-....+.. ++-.| +....
T Consensus 36 g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~---------iP~k~--R~~~~---------- 94 (342)
T PF06433_consen 36 GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE---------IPPKP--RAQVV---------- 94 (342)
T ss_dssp ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE---------ETTS---B--BS----------
T ss_pred ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe---------cCCcc--hheec----------
Confidence 3344577899999888754 23468999987654321110 00000 00000
Q ss_pred ccccccccceeEEEEeeCCCCcEEEEe--eCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCC
Q 010256 106 LKSLEIEEKINKIRWCQSANSALYLLS--TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (514)
Q Consensus 106 ~~~~~~~~~v~~i~~~~~~~~~~l~s~--~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 183 (514)
.....+++ +.+|++++.. +--..|.|-|+..++......... +...-|.+
T Consensus 95 -------~~~~~~~l--s~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-------------------C~~iyP~~ 146 (342)
T PF06433_consen 95 -------PYKNMFAL--SADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-------------------CWLIYPSG 146 (342)
T ss_dssp ---------GGGEEE---TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-------------------EEEEEEEE
T ss_pred -------ccccceEE--ccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-------------------EEEEEecC
Confidence 01122344 5667776664 556778888888888776665541 11111111
Q ss_pred -CccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEecCCeEEEEec
Q 010256 184 -GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISADDLRINLWNL 261 (514)
Q Consensus 184 -~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~d~~i~iwd~ 261 (514)
+.+ .+-|.||.+.-.. +...-. ...+....|...+...+..-++... +.++....+|.|+--|+
T Consensus 147 ~~~F------------~~lC~DGsl~~v~-Ld~~Gk-~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dl 212 (342)
T PF06433_consen 147 NRGF------------SMLCGDGSLLTVT-LDADGK-EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADL 212 (342)
T ss_dssp TTEE------------EEEETTSCEEEEE-ETSTSS-EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEE
T ss_pred CCce------------EEEecCCceEEEE-ECCCCC-EeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEec
Confidence 112 5556677666554 221111 1111122232222222223344444 44555668888888888
Q ss_pred cCCCceee-eeccCC---CcccccCCceEEEEEecCCCcEEEEEec--C-------CeEEEEEcCCCccccccccceecc
Q 010256 262 EISNQSFN-IVDVKP---ANMEDLTEVITSAEFHPTHCNMLAYSSS--K-------GSIRLIDMRQSALCDTHSKLFEEQ 328 (514)
Q Consensus 262 ~~~~~~~~-~~~~~~---~~~~~~~~~i~~v~~~p~~~~~l~~~~~--d-------g~i~~wd~~~~~~~~~~~~~~~~~ 328 (514)
........ .+.+-. ..-....+.-.-+++++..+++++.-.. + ..|.++|+.+++. +..++..
T Consensus 213 sg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr----v~Ri~l~ 288 (342)
T PF06433_consen 213 SGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR----VARIPLE 288 (342)
T ss_dssp TTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE----EEEEEEE
T ss_pred cCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE----EEEEeCC
Confidence 74432211 111000 0001112333457777765344433221 1 1477888888776 3444432
Q ss_pred CCCCccceeeccccceeEEEEecCCC-EEEEE--eCCeEEEEEccCCCCceeeeeec
Q 010256 329 EAPGTRSFFTEIIASISDIKFARNGR-HILSR--DYMTLKLWDINMDSGPVATFQVH 382 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~--~~~~i~iwd~~~~~~~~~~~~~~ 382 (514)
.++.+|+.+.+.+ +|++. .++.+.+||..+ ++.+.++..-
T Consensus 289 -------------~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t-Gk~~~~~~~l 331 (342)
T PF06433_consen 289 -------------HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT-GKLVRSIEQL 331 (342)
T ss_dssp -------------EEESEEEEESSSS-EEEEEETTTTEEEEEETTT---EEEEE---
T ss_pred -------------CccceEEEccCCCcEEEEEcCCCCeEEEEeCcC-CcEEeehhcc
Confidence 3688999999877 44443 348999999998 8888887643
No 350
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.59 E-value=0.0089 Score=60.05 Aligned_cols=101 Identities=20% Similarity=0.199 Sum_probs=71.2
Q ss_pred EEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceec
Q 010256 249 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (514)
Q Consensus 249 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 327 (514)
..| ++..+..||.+.....+ +.... ..........|++-+.+| .||+|+.+|.||+||- .+...
T Consensus 546 flGls~n~lfriDpR~~~~k~--v~~~~-k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~A--------- 610 (794)
T PF08553_consen 546 FLGLSDNSLFRIDPRLSGNKL--VDSQS-KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRA--------- 610 (794)
T ss_pred EEEECCCceEEeccCCCCCce--eeccc-cccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhh---------
Confidence 456 88899999998654211 11110 112245567888888887 8999999999999993 33221
Q ss_pred cCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEcc
Q 010256 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~ 370 (514)
...+.+...+|..|..+.||+++++..+..|.+++..
T Consensus 611 ------KT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 611 ------KTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred ------hhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 1224455579999999999999999877788888864
No 351
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.56 E-value=0.026 Score=47.50 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=77.9
Q ss_pred EecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEE
Q 010256 290 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWD 368 (514)
Q Consensus 290 ~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd 368 (514)
.-++...+++.|+..+.+.--|..+|++.++.+.- ..|.+-+.- -|.+++.|-. |.+++.+
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg-----------------~RiE~sa~v-vgdfVV~GCy~g~lYfl~ 79 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILG-----------------VRIECSAIV-VGDFVVLGCYSGGLYFLC 79 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhhC-----------------ceeeeeeEE-ECCEEEEEEccCcEEEEE
Confidence 34454578899999999999999999876542211 122222222 4677888866 9999999
Q ss_pred ccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 369 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
.++ +.....+...+.... .....+++.+|..|+.|+..+..|.++..+.
T Consensus 80 ~~t-Gs~~w~f~~~~~vk~---------------~a~~d~~~glIycgshd~~~yalD~~~~~cV 128 (354)
T KOG4649|consen 80 VKT-GSQIWNFVILETVKV---------------RAQCDFDGGLIYCGSHDGNFYALDPKTYGCV 128 (354)
T ss_pred ecc-hhheeeeeehhhhcc---------------ceEEcCCCceEEEecCCCcEEEecccccceE
Confidence 998 766666655443321 4556779999999999999999999876554
No 352
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.045 Score=51.48 Aligned_cols=193 Identities=15% Similarity=0.171 Sum_probs=120.4
Q ss_pred eEEEEECCCCCEEEE-e-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe--cCCeEEEEE
Q 010256 236 INSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLID 311 (514)
Q Consensus 236 v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~--~dg~i~~wd 311 (514)
...+++++.+..+.. . .+..|.+.|..+......+ ........++++|++..+.++-. .++.+.+.|
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~---------~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid 146 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI---------PVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVID 146 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe---------eeccCCceEEECCCCCEEEEEecccCCceEEEEe
Confidence 456788888875544 4 6899999997755433221 11225678999999944444444 368888888
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--CCeEEEEEccCCCCcee-----eeeeccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVA-----TFQVHEH 384 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~iwd~~~~~~~~~-----~~~~~~~ 384 (514)
..+++.... ..... .+ ..++++|+|..++... ++.|.+.|... ..... .......
T Consensus 147 ~~t~~~~~~----~~vG~------------~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~~~~ 208 (381)
T COG3391 147 AATNKVTAT----IPVGN------------TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGVGTG 208 (381)
T ss_pred CCCCeEEEE----EecCC------------Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCC-cceeccccccccccCCC
Confidence 887765321 11110 23 7899999999888764 49999999764 22221 0111111
Q ss_pred cccccccccccCCccceeeEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeec-C
Q 010256 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-S 460 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-s 460 (514)
+ ..+.++|+|+++...... +.+...|..++................+...|+++++.+. +
T Consensus 209 P----------------~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~ 272 (381)
T COG3391 209 P----------------AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS 272 (381)
T ss_pred C----------------ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec
Confidence 1 168999999976654433 5888888887633322122221144568899999987776 4
Q ss_pred CCCeEEEeeCC
Q 010256 461 LSGVVRRVKGA 471 (514)
Q Consensus 461 ~d~~v~i~~~~ 471 (514)
..+.+.+.++.
T Consensus 273 ~~~~V~vid~~ 283 (381)
T COG3391 273 QGGTVSVIDGA 283 (381)
T ss_pred CCCeEEEEeCC
Confidence 44777774444
No 353
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.53 E-value=0.059 Score=48.18 Aligned_cols=258 Identities=9% Similarity=0.033 Sum_probs=124.6
Q ss_pred CCCCcEEEEee----------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 123 SANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 123 ~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+++++.+++++ ..-.|.+||..+-+......++..+.... .......+++.||+.+.+.+.
T Consensus 44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~--------~~~~~~~~ls~dgk~~~V~N~- 114 (342)
T PF06433_consen 44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV--------VPYKNMFALSADGKFLYVQNF- 114 (342)
T ss_dssp -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B--------S--GGGEEE-TTSSEEEEEEE-
T ss_pred CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee--------cccccceEEccCCcEEEEEcc-
Confidence 46666766643 34579999999988777666553211100 011114567777776622111
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeec
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~ 272 (514)
+-..+|.+-| +..... ... -....+..+-=.....+...|.||++.-..+...++......
T Consensus 115 ---------TPa~SVtVVD-l~~~kv------v~e---i~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 115 ---------TPATSVTVVD-LAAKKV------VGE---IDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST 175 (342)
T ss_dssp ---------SSSEEEEEEE-TTTTEE------EEE---EEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred ---------CCCCeEEEEE-CCCCce------eee---ecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeec
Confidence 1112333333 111100 000 001111111111222333445888888887775444332110
Q ss_pred cCCCcccccCCce-EEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 273 VKPANMEDLTEVI-TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 273 ~~~~~~~~~~~~i-~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.-+.....++ ..-++...+ ..++--+.+|.|+--|+....... ...++.-...... -..-.+...-+++++
T Consensus 176 ---~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~--~~~~~~~t~~e~~--~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 176 ---KVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKF--GKPWSLLTDAEKA--DGWRPGGWQLIAYHA 247 (342)
T ss_dssp ---EESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEE--EEEEESS-HHHHH--TTEEE-SSS-EEEET
T ss_pred ---cccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccc--cCcccccCccccc--cCcCCcceeeeeecc
Confidence 0122222222 234455555 456668899999998887654211 1222210000000 000113455678887
Q ss_pred CCCEEEE----Ee-----C--CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC-EEEEE-eC
Q 010256 352 NGRHILS----RD-----Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATG-SY 418 (514)
Q Consensus 352 ~g~~l~~----~~-----~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~-~~ 418 (514)
....|+. |. + ..|.++|+.+ ++.+.++...... .++.++.|.+ +|++. ..
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l~~~~----------------~Si~Vsqd~~P~L~~~~~~ 310 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPLEHPI----------------DSIAVSQDDKPLLYALSAG 310 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEEEEEE----------------SEEEEESSSS-EEEEEETT
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeCCCcc----------------ceEEEccCCCcEEEEEcCC
Confidence 5544443 21 2 3678888887 8888888754332 2788998876 55544 46
Q ss_pred CCcEEEEecCCCcee
Q 010256 419 SNLFRVFGCSEGSAE 433 (514)
Q Consensus 419 dg~i~iwd~~~~~~~ 433 (514)
++.+.+||..+++..
T Consensus 311 ~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 311 DGTLDVYDAATGKLV 325 (342)
T ss_dssp TTEEEEEETTT--EE
T ss_pred CCeEEEEeCcCCcEE
Confidence 789999999998443
No 354
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.51 E-value=0.11 Score=50.73 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.1
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcee
Q 010256 409 DGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 409 ~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
.+.+|+.++.||.|+.+|.++|+.+
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCcee
Confidence 4678888899999999999998544
No 355
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.36 E-value=0.00034 Score=40.39 Aligned_cols=31 Identities=19% Similarity=0.483 Sum_probs=28.9
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEE
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~ 63 (514)
.|.+.|++++|++++.++++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 5778999999999999999999999999996
No 356
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.28 E-value=0.14 Score=46.79 Aligned_cols=167 Identities=14% Similarity=0.136 Sum_probs=69.8
Q ss_pred ccCeEEEEECCCCC-EEEEe----cCC-eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe----
Q 010256 233 DYHINSISNNSDGE-TFISA----DDL-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---- 302 (514)
Q Consensus 233 ~~~v~~~~~~~~~~-~l~s~----~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~---- 302 (514)
...+..+.|+|... +|+-| .+. .-|||-+++.......+ .+ ......+..=-|.|+|..+...+.
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v--~~---~~~~e~~gHEfw~~DG~~i~y~~~~~~~ 261 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV--HR---RMEGESVGHEFWVPDGSTIWYDSYTPGG 261 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES--S------TTEEEEEEEE-TTSS-EEEEEEETTT
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee--ec---CCCCcccccccccCCCCEEEEEeecCCC
Confidence 34567788888644 44444 233 24777776554433321 11 111333445568999944444333
Q ss_pred cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE-EeC--C--------------eEE
Q 010256 303 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDY--M--------------TLK 365 (514)
Q Consensus 303 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~--~--------------~i~ 365 (514)
.+..|.-+|+.+++.. ..... .....+.-++||++++. |++ . -|+
T Consensus 262 ~~~~i~~~d~~t~~~~----~~~~~--------------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~ 323 (386)
T PF14583_consen 262 QDFWIAGYDPDTGERR----RLMEM--------------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY 323 (386)
T ss_dssp --EEEEEE-TTT--EE----EEEEE---------------SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred CceEEEeeCCCCCCce----EEEeC--------------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence 1335666677765431 01111 13445566789999886 443 1 345
Q ss_pred EEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEE-EEeCCCcEEEEecC
Q 010256 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCS 428 (514)
Q Consensus 366 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~ 428 (514)
++++.. .....+..|....... ..+....---..|+|||++++ ++...|...||=++
T Consensus 324 ~~~~~~--~~~~~l~~h~~sw~v~----~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 324 LFDVEA--GRFRKLARHDTSWKVL----DGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp EEETTT--TEEEEEEE-------B----TTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred Eecccc--CceeeeeeccCcceee----cCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 566653 2223333332111000 000000001579999999866 45567777776443
No 357
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.14 Score=46.04 Aligned_cols=222 Identities=13% Similarity=0.084 Sum_probs=110.6
Q ss_pred EEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCc
Q 010256 239 ISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (514)
Q Consensus 239 ~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 316 (514)
..|.++...|+-+ ..+.|.-|+..+++...- . ....+.++..-..+ ..|+++.. .+.+++..++.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~---------~-~p~~~~~~~~~d~~-g~Lv~~~~--g~~~~~~~~~~ 96 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVF---------P-SPGGFSSGALIDAG-GRLIACEH--GVRLLDPDTGG 96 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEE---------E-CCCCcccceeecCC-CeEEEEcc--ccEEEeccCCc
Confidence 3477777755555 789999999875543321 1 23333444433333 24443332 34556665544
Q ss_pred cccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-e---------CCeEEEEEccCCCCceeeeeeccccc
Q 010256 317 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D---------YMTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~---------~~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
............. ....+.+...|+|.+.++. . ...-.||-+...+..+..+..+-...
T Consensus 97 ~~t~~~~~~~~~~-----------~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~ 165 (307)
T COG3386 97 KITLLAEPEDGLP-----------LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIP 165 (307)
T ss_pred eeEEeccccCCCC-----------cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEec
Confidence 3111011111111 1356778889999888862 2 11113444442133333333221111
Q ss_pred cccccccccCCccceeeEEEcCCCCEEEEEeC-CCcEEEEecCC--C---cee-eeeecCCCcceeEEEECCCCCceeec
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCSE--G---SAE-STTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~--~---~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
..++||||++.|..+.. .+.|+-|++.. + ... ...........-.++...+|.+.+++
T Consensus 166 ---------------NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a 230 (307)
T COG3386 166 ---------------NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAA 230 (307)
T ss_pred ---------------CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEec
Confidence 17999999987776654 47888887752 1 111 11122233444456667777777555
Q ss_pred CCCC-eEEE--eeCCCCCccccCCcccccccceEEEEE-cCCCCEEEEEe
Q 010256 460 SLSG-VVRR--VKGADNSALDANGNAFDFSMKLLHLAW-HPSENSIACAA 505 (514)
Q Consensus 460 s~d~-~v~i--~~~~~~~~~~~~~~~~~~~~~v~~~~~-spd~~~l~~~~ 505 (514)
-.+| .|.+ -+|......++ ....+++++| .|+.+.|.+.+
T Consensus 231 ~~~g~~v~~~~pdG~l~~~i~l------P~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 231 VWGGGRVVRFNPDGKLLGEIKL------PVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ccCCceEEEECCCCcEEEEEEC------CCCCCccceEeCCCcCEEEEEe
Confidence 4443 4444 22222211111 1256677777 45566666544
No 358
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.22 E-value=0.024 Score=52.12 Aligned_cols=137 Identities=13% Similarity=0.168 Sum_probs=63.6
Q ss_pred CeEEEEECCCCCEEEEe---------------------cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEe--
Q 010256 235 HINSISNNSDGETFISA---------------------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-- 291 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~---------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~-- 291 (514)
--.++.|.|..+.++|+ ...++.+||+.+.+.. +.++ +......+..|.|.
T Consensus 182 ~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~-Q~id-----Lg~~g~~pLEvRflH~ 255 (461)
T PF05694_consen 182 FGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLL-QTID-----LGEEGQMPLEVRFLHD 255 (461)
T ss_dssp ----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEE-EEEE-----S-TTEEEEEEEEE-SS
T ss_pred CCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEe-eEEe-----cCCCCCceEEEEecCC
Confidence 34577788888887763 1368999999965544 3332 22222345567775
Q ss_pred cCCCcEEEEEecCCeEEEEEc-CCCccccccccceeccCC-------CCccceeeccccceeEEEEecCCCEEEEEeC--
Q 010256 292 PTHCNMLAYSSSKGSIRLIDM-RQSALCDTHSKLFEEQEA-------PGTRSFFTEIIASISDIKFARNGRHILSRDY-- 361 (514)
Q Consensus 292 p~~~~~l~~~~~dg~i~~wd~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-- 361 (514)
|+...-|+.+.-...|..|-- ..+.-.. .++.+.... |....-+..-..-|+.+.+|.|.++|..+.-
T Consensus 256 P~~~~gFvg~aLss~i~~~~k~~~g~W~a--~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~ 333 (461)
T PF05694_consen 256 PDANYGFVGCALSSSIWRFYKDDDGEWAA--EKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH 333 (461)
T ss_dssp TT--EEEEEEE--EEEEEEEE-ETTEEEE--EEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTT
T ss_pred CCccceEEEEeccceEEEEEEcCCCCeee--eEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccC
Confidence 444234555555556655543 3333111 122221111 0001111122356899999999999998753
Q ss_pred CeEEEEEccCCCCceeee
Q 010256 362 MTLKLWDINMDSGPVATF 379 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~ 379 (514)
|.|+.||+..+.++..+-
T Consensus 334 GdvrqYDISDP~~Pkl~g 351 (461)
T PF05694_consen 334 GDVRQYDISDPFNPKLVG 351 (461)
T ss_dssp TEEEEEE-SSTTS-EEEE
T ss_pred CcEEEEecCCCCCCcEEe
Confidence 999999999766655443
No 359
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.018 Score=53.53 Aligned_cols=141 Identities=11% Similarity=0.125 Sum_probs=91.7
Q ss_pred EEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCC--------EEEEEeCCeEEEEE
Q 010256 297 MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR--------HILSRDYMTLKLWD 368 (514)
Q Consensus 297 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--------~l~~~~~~~i~iwd 368 (514)
+|.++.....++-.|++.|+. +..|+.+. .|.-+.+.|+.+ .|+.-++..|.-||
T Consensus 348 il~~~~~~~~l~klDIE~GKI----VeEWk~~~-------------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriD 410 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKI----VEEWKFED-------------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRID 410 (644)
T ss_pred EeeCCCCcCcceeeeccccee----eeEeeccC-------------CcceeeccCCcchhcccccccEEeecCCceEEec
Confidence 445566667788889999987 44455443 366677777543 23333668899999
Q ss_pred ccCCCC-ceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEE
Q 010256 369 INMDSG-PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ 447 (514)
Q Consensus 369 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 447 (514)
.+-.++ .+...++|+-.. +.-+ .|.+-. ...+|+.||.+|.|++||- .+......+++-..+|..+
T Consensus 411 pRv~~~~kl~~~q~kqy~~---------k~nF--sc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 411 PRVQGKNKLAVVQSKQYST---------KNNF--SCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHV 477 (644)
T ss_pred ccccCcceeeeeecccccc---------cccc--ceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeE
Confidence 886444 233333333211 1111 133333 4458999999999999998 5544446788899999999
Q ss_pred EECCCCCceeecCCCCeEEE
Q 010256 448 VQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 448 ~~~~~~~~l~s~s~d~~v~i 467 (514)
..+.+|++|+.-....-+-+
T Consensus 478 dvtadGKwil~Tc~tyLlLi 497 (644)
T KOG2395|consen 478 DVTADGKWILATCKTYLLLI 497 (644)
T ss_pred EeeccCcEEEEecccEEEEE
Confidence 99999999876665544443
No 360
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.19 E-value=0.0016 Score=39.37 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=29.7
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEec
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERT 65 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~ 65 (514)
.-...|.+++|+|..++||.|+.+|.|.||.+.
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 345679999999999999999999999999983
No 361
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.18 E-value=0.051 Score=39.67 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=39.4
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEe---cCCCcEEEEEecCCeEEE
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH---PTHCNMLAYSSSKGSIRL 309 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~---p~~~~~l~~~~~dg~i~~ 309 (514)
..|.+++-... ..++.+ .+|+|-+|+-. ....++ + ....+.++.+. -+|..-|++|-.+|.|-+
T Consensus 43 ~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRi---K------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 43 DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRI---K------SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeee---c------cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 34556655555 457777 99999999764 333322 1 23335666543 344457899999998753
No 362
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.14 E-value=0.21 Score=45.98 Aligned_cols=178 Identities=14% Similarity=0.103 Sum_probs=99.3
Q ss_pred CeEEEEeccCCCceeeeeccCCCcccccCCceEEEE---EecC---CCcEEEEEec----------CCeEEEEEcCCCcc
Q 010256 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE---FHPT---HCNMLAYSSS----------KGSIRLIDMRQSAL 317 (514)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~---~~p~---~~~~l~~~~~----------dg~i~~wd~~~~~~ 317 (514)
..|++.|..+.+.. ..+ .+.. ...+.+++ +..+ ...+|+.|+. .|.|.++++.....
T Consensus 2 s~i~l~d~~~~~~~-~~~-----~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~ 74 (321)
T PF03178_consen 2 SSIRLVDPTTFEVL-DSF-----ELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE 74 (321)
T ss_dssp -EEEEEETTTSSEE-EEE-----EEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--
T ss_pred cEEEEEeCCCCeEE-EEE-----ECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc
Confidence 35777777655433 222 2221 23344443 3322 1267777764 28899999988410
Q ss_pred ccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCC-ceeeeeeccccccccccccccC
Q 010256 318 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSG-PVATFQVHEHLRPKLCDLYEND 396 (514)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 396 (514)
....++.... ....++|++++-- ++ .|+++..+.|.+|++.. .+ ....-..+... .
T Consensus 75 ~~~~l~~i~~----------~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~-~~~l~~~~~~~~~~-~--------- 131 (321)
T PF03178_consen 75 NNFKLKLIHS----------TEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDN-SKTLLKKAFYDSPF-Y--------- 131 (321)
T ss_dssp ---EEEEEEE----------EEESS-EEEEEEE-TT-EEEEEETTEEEEEEEET-TSSEEEEEEE-BSS-S---------
T ss_pred cceEEEEEEE----------EeecCcceEhhhh-CC-EEEEeecCEEEEEEccC-cccchhhheecceE-E---------
Confidence 0000111111 1234678888766 34 47777778999999996 44 22222222211 0
Q ss_pred CccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee--cCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 397 SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL--EASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 397 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
..+....+++|+.|..-..+.++...........+ ......+.++.+-+++..++.+..+|.+.+
T Consensus 132 ------i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~ 198 (321)
T PF03178_consen 132 ------ITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFV 198 (321)
T ss_dssp ------EEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEE
T ss_pred ------EEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEE
Confidence 33344446799999988888888655422222222 234556788888866679999999999998
No 363
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.10 E-value=0.22 Score=45.62 Aligned_cols=78 Identities=13% Similarity=0.145 Sum_probs=37.2
Q ss_pred cCCceEEEEEecCCCcEEEEEecC---Ce-EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEE
Q 010256 281 LTEVITSAEFHPTHCNMLAYSSSK---GS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (514)
Q Consensus 281 ~~~~i~~v~~~p~~~~~l~~~~~d---g~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 356 (514)
....+..+.|+|..+.+|+.|-+. .. -|||-+++.... .+.+..+.. ...+..=-|.|||..|
T Consensus 186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~---~~~v~~~~~----------~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN---VKKVHRRME----------GESVGHEFWVPDGSTI 252 (386)
T ss_dssp ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------EESS---T----------TEEEEEEEE-TTSS-E
T ss_pred cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc---ceeeecCCC----------CcccccccccCCCCEE
Confidence 456778899999987777776652 21 355655442211 111111110 1234555688898877
Q ss_pred EE-E----e-CCeEEEEEccC
Q 010256 357 LS-R----D-YMTLKLWDINM 371 (514)
Q Consensus 357 ~~-~----~-~~~i~iwd~~~ 371 (514)
.- + . +..|.-+|+.+
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDT 273 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT
T ss_pred EEEeecCCCCceEEEeeCCCC
Confidence 64 2 1 23455566665
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0037 Score=59.09 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=61.0
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceE-EEEEecCCCcEEEEEecCCeEEEEE
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~-~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
..+.-+.|+|.-..+|.+ .+|.|.+..++ .+... ++.-+...++ +++|.||| ++||.|-.||+|++.|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlw--------tip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLW--------TIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHD 90 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeE--------eccCCCCccceeeeecCCC-CEEEEEecCCeEEEEE
Confidence 456778999999999999 99999998887 33333 2333444555 99999999 9999999999999999
Q ss_pred cCCCcccc
Q 010256 312 MRQSALCD 319 (514)
Q Consensus 312 ~~~~~~~~ 319 (514)
..++....
T Consensus 91 ve~~~~l~ 98 (665)
T KOG4640|consen 91 VEKGGRLV 98 (665)
T ss_pred ccCCCcee
Confidence 99987653
No 365
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.01 E-value=0.018 Score=56.93 Aligned_cols=143 Identities=10% Similarity=0.086 Sum_probs=81.6
Q ss_pred ceeEEEEecCCCEEEEEe-------C--CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEE
Q 010256 343 SISDIKFARNGRHILSRD-------Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~-------~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (514)
.+.+.+++|+|+.++.-. + ..|.+++.. +.......+.. ...-.|+|||+.|
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g~~-----------------~t~PsWspDG~~l 411 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEGHS-----------------LTRPSWSLDADAV 411 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecCCC-----------------CCCceECCCCCce
Confidence 578899999999887632 3 355555543 32222222221 1167899998887
Q ss_pred EEEeCC------------CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE---ee--CCCCCcc
Q 010256 414 ATGSYS------------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR---VK--GADNSAL 476 (514)
Q Consensus 414 ~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i---~~--~~~~~~~ 476 (514)
++.... +.+++.++..+... . .....|..+.|+|||+.++... ++.|.+ .. +.. .
T Consensus 412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~-~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~-- 483 (591)
T PRK13616 412 WVVVDGNTVVRVIRDPATGQLARTPVDASAVA-S---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-Y-- 483 (591)
T ss_pred EEEecCcceEEEeccCCCceEEEEeccCchhh-h---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-e--
Confidence 776532 23333344332111 1 2245699999999999888766 477777 22 221 1
Q ss_pred ccCCc--c-cccccceEEEEEcCCCCEEEEEecCcEEEE
Q 010256 477 DANGN--A-FDFSMKLLHLAWHPSENSIACAASNSLYMY 512 (514)
Q Consensus 477 ~~~~~--~-~~~~~~v~~~~~spd~~~l~~~~~~~~~i~ 512 (514)
.+... . .+....+.+++|..++.+++........+|
T Consensus 484 ~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~ 522 (591)
T PRK13616 484 ALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVW 522 (591)
T ss_pred eecccEEeecccCCccccceEecCCEEEEEecCCCCceE
Confidence 11100 1 123344688999999997654433333344
No 366
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.004 Score=58.84 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=67.6
Q ss_pred cceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCC
Q 010256 342 ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (514)
..+..+.|+|.-.++|.+.. |.|-+..+. .+.+.++..+...+. .+++|.|||++||.|-.||
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~--------------~sL~W~~DGkllaVg~kdG 84 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVT--------------ASLCWRPDGKLLAVGFKDG 84 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccc--------------eeeeecCCCCEEEEEecCC
Confidence 35788999999999999865 888888776 455555554443211 1899999999999999999
Q ss_pred cEEEEecCCCceeeeeecCCCcceeEEEEC
Q 010256 421 LFRVFGCSEGSAESTTLEASKNPMRRQVQT 450 (514)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 450 (514)
+|++.|++++..+......-..+|..+.|.
T Consensus 85 ~I~L~Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 85 TIRLHDVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred eEEEEEccCCCceeccccccccchheeecc
Confidence 999999998855543223334455566664
No 367
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.92 E-value=0.28 Score=43.91 Aligned_cols=228 Identities=15% Similarity=0.137 Sum_probs=121.2
Q ss_pred CCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccc
Q 010256 243 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 321 (514)
Q Consensus 243 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 321 (514)
..++.|+.| ++| +.+++........++. ....|..+...|+- +.+++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---------~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL---------KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe---------ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhcccccc
Confidence 457788888 788 8999984333332221 23349999999987 5555443 599999999875443210
Q ss_pred ccceeccCCCCccceeeccccceeEEE---EecCCCEEEEEeCCeEEEEEccCC---C-Cceeeeeeccccccccccccc
Q 010256 322 SKLFEEQEAPGTRSFFTEIIASISDIK---FARNGRHILSRDYMTLKLWDINMD---S-GPVATFQVHEHLRPKLCDLYE 394 (514)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~i~~~~---~s~~g~~l~~~~~~~i~iwd~~~~---~-~~~~~~~~~~~~~~~~~~~~~ 394 (514)
. ......... ..........+...+ -......|+.+...+|.+|..... . +..+.+.....
T Consensus 73 ~-~~~~~~~~~-~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~---------- 140 (275)
T PF00780_consen 73 A-PLAFPKSRS-LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDP---------- 140 (275)
T ss_pred c-ccccccccc-ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCC----------
Confidence 0 000000000 000000112233333 223445666677779999988752 1 33344443332
Q ss_pred cCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC------------CcceeEEEECCCCCceeecCCC
Q 010256 395 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS------------KNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 395 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~s~s~d 462 (514)
+.+++|. ++.|+.|..+ ...+.|+.++... ..+... ..++ .+..-+++.+|++- .+
T Consensus 141 ------~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~-~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~Ll~~-~~ 208 (275)
T PF00780_consen 141 ------PSSIAFL--GNKICVGTSK-GFYLIDLNTGSPS-ELLDPSDSSSSFKSRNSSSKPL-GIFQLSDNEFLLCY-DN 208 (275)
T ss_pred ------cEEEEEe--CCEEEEEeCC-ceEEEecCCCCce-EEeCccCCcchhhhcccCCCce-EEEEeCCceEEEEe-cc
Confidence 2278887 5677777654 5788899866432 122111 1222 23333445666654 34
Q ss_pred CeEEE-eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 463 GVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 463 ~~v~i-~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
-.+.+ ..|.... ...+.......++++ ...+|.+..++.+-||+
T Consensus 209 ~g~fv~~~G~~~r-----~~~i~W~~~p~~~~~--~~pyli~~~~~~iEV~~ 253 (275)
T PF00780_consen 209 IGVFVNKNGEPSR-----KSTIQWSSAPQSVAY--SSPYLIAFSSNSIEVRS 253 (275)
T ss_pred eEEEEcCCCCcCc-----ccEEEcCCchhEEEE--ECCEEEEECCCEEEEEE
Confidence 44455 3333221 122234556667776 45688888888888876
No 368
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.91 E-value=0.34 Score=44.57 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=69.9
Q ss_pred CccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 232 HDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 232 h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
..++|.+++-- +..|+.+..+.|.+|++...+..... ........+.++... + ++++.|.....+.++.
T Consensus 87 ~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~------~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 87 VKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKK------AFYDSPFYITSLSVF--K-NYILVGDAMKSVSLLR 155 (321)
T ss_dssp ESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEE------EEE-BSSSEEEEEEE--T-TEEEEEESSSSEEEEE
T ss_pred ecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhh------heecceEEEEEEecc--c-cEEEEEEcccCEEEEE
Confidence 34778888755 44577777799999999866522221 112223356666655 4 6888999988888886
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEcc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDIN 370 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~ 370 (514)
.+..... +..+... .....++++.|-++++.+++++. |.+.++...
T Consensus 156 ~~~~~~~---l~~va~d----------~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 156 YDEENNK---LILVARD----------YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EETTTE----EEEEEEE----------SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEccCCE---EEEEEec----------CCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 5441110 1111110 01246888999877777777776 999999886
No 369
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.90 E-value=0.091 Score=46.15 Aligned_cols=144 Identities=12% Similarity=0.101 Sum_probs=88.1
Q ss_pred ceeEEEEecCCCEEEEEe--C--CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC
Q 010256 343 SISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~--~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (514)
.+.+.+++++++.++.-. + ..+.++... +.....+.+.. +....|++++...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~-----------------l~~PS~d~~g~~W~v~~~ 85 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGS-----------------LTRPSWDPDGWVWTVDDG 85 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCc-----------------cccccccCCCCEEEEEcC
Confidence 588899999999887743 3 555555543 22222222221 226789999888777776
Q ss_pred CCcEEEEe-cCCCceeeeeecCC--CcceeEEEECCCCCceeecC---CCCeEEE----eeCCC-CCccccCCc--cc-c
Q 010256 419 SNLFRVFG-CSEGSAESTTLEAS--KNPMRRQVQTPSRPSRPLGS---LSGVVRR----VKGAD-NSALDANGN--AF-D 484 (514)
Q Consensus 419 dg~i~iwd-~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~s---~d~~v~i----~~~~~-~~~~~~~~~--~~-~ 484 (514)
+...+++. ..++......+... ...|.++.++|||..+|... .++.|.+ .++.. +. .+... .. .
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~--~l~~~~~~~~~ 163 (253)
T PF10647_consen 86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR--RLTGPRRVAPP 163 (253)
T ss_pred CCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc--eeccceEeccc
Confidence 77777774 33333322233322 12899999999999776665 3577777 22222 11 11111 11 2
Q ss_pred cccceEEEEEcCCCCEEEEEecC
Q 010256 485 FSMKLLHLAWHPSENSIACAASN 507 (514)
Q Consensus 485 ~~~~v~~~~~spd~~~l~~~~~~ 507 (514)
....++.++|.+++.+++.+...
T Consensus 164 ~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 164 LLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred ccCcceeeeecCCCEEEEEeCCC
Confidence 35688999999999988876633
No 370
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.84 E-value=0.34 Score=43.64 Aligned_cols=99 Identities=11% Similarity=0.160 Sum_probs=60.8
Q ss_pred ccceeEEEEecCCCEEEEEeC--CeEEEEEccC-CCCce-----eeeeeccccccccccccccCCccceeeEEEcCCCCE
Q 010256 341 IASISDIKFARNGRHILSRDY--MTLKLWDINM-DSGPV-----ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (514)
Q Consensus 341 ~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 412 (514)
-..-+.++||||++.|+..+. +.|.-|++.. .+..- ..+....+... .++...+|.+
T Consensus 162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PD---------------G~~vDadG~l 226 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPD---------------GMAVDADGNL 226 (307)
T ss_pred EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCC---------------ceEEeCCCCE
Confidence 345678999999998888754 7888877752 01111 11111111111 5788889998
Q ss_pred EEEEeCCC-cEEEEecCCCceeeeeecCCCcceeEEEEC-CCCCce
Q 010256 413 VATGSYSN-LFRVFGCSEGSAESTTLEASKNPMRRQVQT-PSRPSR 456 (514)
Q Consensus 413 l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l 456 (514)
.+++-.+| .|.+|+.. + ++...+.-....+..++|- ++.+.|
T Consensus 227 w~~a~~~g~~v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG~~~~~L 270 (307)
T COG3386 227 WVAAVWGGGRVVRFNPD-G-KLLGEIKLPVKRPTNPAFGGPDLNTL 270 (307)
T ss_pred EEecccCCceEEEECCC-C-cEEEEEECCCCCCccceEeCCCcCEE
Confidence 86555554 99999998 5 4445555554666777774 444433
No 371
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.042 Score=51.20 Aligned_cols=100 Identities=16% Similarity=0.187 Sum_probs=68.2
Q ss_pred Ee-cCCeEEEEeccCCCce-eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceec
Q 010256 250 SA-DDLRINLWNLEISNQS-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 327 (514)
.| ++..|.-||++-.... +..... .-........|.+-..+| ++++|+.+|.||+||- .+...
T Consensus 399 vGLs~n~vfriDpRv~~~~kl~~~q~---kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~A--------- 463 (644)
T KOG2395|consen 399 VGLSDNSVFRIDPRVQGKNKLAVVQS---KQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRA--------- 463 (644)
T ss_pred EeecCCceEEecccccCcceeeeeec---cccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhh---------
Confidence 46 8888999998854431 111100 111123445677777776 8999999999999996 44332
Q ss_pred cCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEcc
Q 010256 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~ 370 (514)
...+++...+|..|..+.+|++|++..+..+.+.++.
T Consensus 464 ------KTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 464 ------KTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ------hhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 1224556679999999999999998777777777764
No 372
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.82 E-value=0.0043 Score=35.42 Aligned_cols=28 Identities=21% Similarity=0.531 Sum_probs=24.1
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEE
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWK 142 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~ 142 (514)
..|.++.|. +++.++++++.|+.+++|+
T Consensus 13 ~~i~~~~~~--~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAFS--PDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEEC--CCCCEEEEecCCCeEEEcC
Confidence 789999995 4456899999999999996
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.79 E-value=0.25 Score=42.60 Aligned_cols=142 Identities=13% Similarity=0.045 Sum_probs=88.3
Q ss_pred eeEEEEecCCCE-EEEEeC-C-eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC-
Q 010256 344 ISDIKFARNGRH-ILSRDY-M-TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS- 419 (514)
Q Consensus 344 i~~~~~s~~g~~-l~~~~~-~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d- 419 (514)
-..++|+|.... ++.+.. | -..++|... .+...++...+.. .+|. -=.|||||++|...-.|
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~-~~~pv~~~s~~~R-----HfyG--------HGvfs~dG~~LYATEndf 135 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNG-AQEPVTLVSQEGR-----HFYG--------HGVFSPDGRLLYATENDF 135 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCC-CcCcEEEecccCc-----eeec--------ccccCCCCcEEEeecCCC
Confidence 345778875443 333433 4 457888886 5555555433321 1111 23699999999876544
Q ss_pred ----CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE-----------------------eeCCC
Q 010256 420 ----NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR-----------------------VKGAD 472 (514)
Q Consensus 420 ----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i-----------------------~~~~~ 472 (514)
|.|-|||...+-.....+..|.-....+.+.+||+.++.+. |.|+. ..|..
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~l 213 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNL 213 (366)
T ss_pred CCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccch
Confidence 78999999876566677788877778999999999988773 33333 11111
Q ss_pred CCccccCCcccccccceEEEEEcCCCCEEEE
Q 010256 473 NSALDANGNAFDFSMKLLHLAWHPSENSIAC 503 (514)
Q Consensus 473 ~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~ 503 (514)
+.+.++. ...+.-.|++++..+||+..+.
T Consensus 214 iekh~Lp--~~l~~lSiRHld~g~dgtvwfg 242 (366)
T COG3490 214 IEKHTLP--ASLRQLSIRHLDIGRDGTVWFG 242 (366)
T ss_pred hhhccCc--hhhhhcceeeeeeCCCCcEEEE
Confidence 1111111 0124567889999999987653
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.72 E-value=0.2 Score=49.75 Aligned_cols=202 Identities=14% Similarity=0.143 Sum_probs=101.2
Q ss_pred cCeEEEEECCCCCEEEEe-c------CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC-C
Q 010256 234 YHINSISNNSDGETFISA-D------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-G 305 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g 305 (514)
..+.+.+++|+|+.++.. . |..-.||-...++....+ .. ....+.-.|+|+| ..+++.... .
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l-------t~--g~~~t~PsWspDG-~~lw~v~dg~~ 419 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV-------LE--GHSLTRPSWSLDA-DAVWVVVDGNT 419 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee-------ec--CCCCCCceECCCC-CceEEEecCcc
Confidence 467789999999988764 2 433344433222222211 11 2237788999998 666665433 2
Q ss_pred eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccC--CCCceeeeeecc
Q 010256 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM--DSGPVATFQVHE 383 (514)
Q Consensus 306 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~--~~~~~~~~~~~~ 383 (514)
.+++.+-..... +......... ... ...+.|..+.|||||..++.-.++.|.+=-+.. .+. ..+....
T Consensus 420 ~~~v~~~~~~gq----l~~~~vd~ge-~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~~~~ 489 (591)
T PRK13616 420 VVRVIRDPATGQ----LARTPVDASA-VAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALTNPR 489 (591)
T ss_pred eEEEeccCCCce----EEEEeccCch-hhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeecccE
Confidence 223322211100 1111110000 000 122579999999999999886667777633221 132 2221100
Q ss_pred ccccccccccccCCccc-eeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC--CCcceeEEEECCCCCceeecC
Q 010256 384 HLRPKLCDLYENDSIFD-KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGS 460 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~s 460 (514)
.... ...+ +.++.|..++.++ .+..++.-.+|.+.-.......+.. ...++.+++-+++ .+....
T Consensus 490 ~l~~---------~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~ 557 (591)
T PRK13616 490 EVGP---------GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTD 557 (591)
T ss_pred Eeec---------ccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEc
Confidence 0000 0001 2378999999865 4454554555655433232222232 2556667777764 344556
Q ss_pred CCCeEEE
Q 010256 461 LSGVVRR 467 (514)
Q Consensus 461 ~d~~v~i 467 (514)
.++.+++
T Consensus 558 ~~g~~~l 564 (591)
T PRK13616 558 ARAVLQL 564 (591)
T ss_pred CCceEEe
Confidence 6777776
No 375
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.66 E-value=0.0067 Score=36.64 Aligned_cols=31 Identities=19% Similarity=0.644 Sum_probs=26.8
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQ 144 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~ 144 (514)
...|..+.|+|..| ++|.++.+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~md--LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD--LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCC--EEEEEECCCeEEEEECC
Confidence 36799999977655 99999999999999983
No 376
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.011 Score=59.54 Aligned_cols=102 Identities=13% Similarity=0.190 Sum_probs=73.4
Q ss_pred cEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEccCCCC
Q 010256 296 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSG 374 (514)
Q Consensus 296 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~ 374 (514)
..++.|+..|.+...|+...-.. . .... .-.++|++++|+.+|+.++.| .+|-|.+||+.. ++
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~---~-~~ne-----------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k 163 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGP---L-HQNE-----------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AK 163 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccch---h-hcCC-----------ccCCcceeeEecCCCceeccccCCCcEEEEEccC-Cc
Confidence 57899999999999998764210 0 0000 012689999999999999998 459999999997 88
Q ss_pred ceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 375 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
+++.+..+..+.. .+..+.+..++..+.++...|. +|.+
T Consensus 164 ~l~~i~e~~ap~t------------~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 164 ILKVITEHGAPVT------------GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceeeeeecCCccc------------eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 8888887776542 2335666666777777777776 5554
No 377
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.57 E-value=0.45 Score=41.40 Aligned_cols=219 Identities=11% Similarity=0.139 Sum_probs=118.5
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.++.|+ ++.+.|++......-.+|=-.+|++.....+.+-
T Consensus 86 ~nvS~LTyn--p~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~----------------------------------- 128 (316)
T COG3204 86 ANVSSLTYN--PDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF----------------------------------- 128 (316)
T ss_pred ccccceeeC--CCcceEEEecCCCceEEEEecCCceEEEeccccc-----------------------------------
Confidence 569999995 4555888888777777777777776665554421
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
...-.|++..++++.++- .++.+.++.+..........
T Consensus 129 -----------------------------------------~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~ 167 (316)
T COG3204 129 -----------------------------------------SDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAK 167 (316)
T ss_pred -----------------------------------------CChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEecc
Confidence 112234455555555555 66777766665443222211
Q ss_pred c--cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 272 D--VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 272 ~--~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
. ++.......+...-.++|.|.. ..|..+-+..-+.||....+.. .+..+....+.....-.-..+.++.|
T Consensus 168 ~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~------~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 168 VQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPS------SLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCc------ccccccccCcccccceEeecccccee
Confidence 1 1111122225567889999998 6777777877888887764331 11111111001000111246788889
Q ss_pred ecCC-CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEE
Q 010256 350 ARNG-RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (514)
Q Consensus 350 s~~g-~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (514)
++.. .+++-+.. +.+.-.|.. +.++..+..+.+...-..++.. ...++..++|.+.++ |.-+..+.+
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~--G~~~~~lsL~~g~~gL~~dipq------aEGiamDd~g~lYIv-SEPnlfy~F 309 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS--GEVIELLSLTKGNHGLSSDIPQ------AEGIAMDDDGNLYIV-SEPNLFYRF 309 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC--CCeeeeEEeccCCCCCcccCCC------cceeEECCCCCEEEE-ecCCcceec
Confidence 8754 44444544 777777766 6666666555443221111111 115777777765544 333444433
No 378
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.48 E-value=0.6 Score=41.83 Aligned_cols=152 Identities=14% Similarity=0.153 Sum_probs=80.7
Q ss_pred CCCcEEEEeeCCCeEEEEEcC-ccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCC
Q 010256 124 ANSALYLLSTNDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG 202 (514)
Q Consensus 124 ~~~~~l~s~~~d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 202 (514)
..++.|+.|+.+| +.++++. ........... .|. .+...++-+.+ ++-
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~----------~I~-------ql~vl~~~~~l------------lvL- 53 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLS----------SIT-------QLSVLPELNLL------------LVL- 53 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecc----------eEE-------EEEEecccCEE------------EEE-
Confidence 3456899999998 8888882 22222222211 122 55555555544 222
Q ss_pred CCCcEEeceeeccccccccccc----cc---cccccCccCeEEEE---ECCCCCEEEEecCCeEEEEeccCCCcee--ee
Q 010256 203 GVSSLRLPVVVTSQETNLVAGC----RR---IYAHAHDYHINSIS---NNSDGETFISADDLRINLWNLEISNQSF--NI 270 (514)
Q Consensus 203 ~~~~i~i~~~~~~~~~~~~~~~----~~---~~~~~h~~~v~~~~---~~~~~~~l~s~~d~~i~iwd~~~~~~~~--~~ 270 (514)
.|+.+.+++ +........... .. .........+...+ -......|+.+...+|.+|......... ..
T Consensus 54 sd~~l~~~~-L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ 132 (275)
T PF00780_consen 54 SDGQLYVYD-LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLL 132 (275)
T ss_pred cCCccEEEE-chhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccccee
Confidence 348888888 444333221110 00 00012223444444 2223455666666699999887532211 11
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcc
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~ 317 (514)
. .+ .....+.+++|.+ +.++.|..+ ...+.|+.++..
T Consensus 133 k-----e~-~lp~~~~~i~~~~---~~i~v~~~~-~f~~idl~~~~~ 169 (275)
T PF00780_consen 133 K-----EI-SLPDPPSSIAFLG---NKICVGTSK-GFYLIDLNTGSP 169 (275)
T ss_pred E-----EE-EcCCCcEEEEEeC---CEEEEEeCC-ceEEEecCCCCc
Confidence 0 11 1357789999984 456666654 577889987653
No 379
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.41 E-value=0.23 Score=36.33 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=43.6
Q ss_pred eEEEEE---ecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC
Q 010256 285 ITSAEF---HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 361 (514)
Q Consensus 285 i~~v~~---~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 361 (514)
|+++++ ..+|.+.|++|+.|..||+|+-.. . +..+... +.|+++.-...+++.++-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~----~~Ei~e~-------------~~v~~L~~~~~~~F~Y~l~N 62 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--I----VAEITET-------------DKVTSLCSLGGGRFAYALAN 62 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--E----EEEEecc-------------cceEEEEEcCCCEEEEEecC
Confidence 445544 456668899999999999998543 2 1222221 46888877777665555455
Q ss_pred CeEEEEEcc
Q 010256 362 MTLKLWDIN 370 (514)
Q Consensus 362 ~~i~iwd~~ 370 (514)
|+|-+|+-.
T Consensus 63 GTVGvY~~~ 71 (111)
T PF14783_consen 63 GTVGVYDRS 71 (111)
T ss_pred CEEEEEeCc
Confidence 888887653
No 380
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.34 E-value=1.2 Score=43.71 Aligned_cols=28 Identities=14% Similarity=0.026 Sum_probs=22.3
Q ss_pred cEEEEeeCCCeEEEEEcCccEEEEEeec
Q 010256 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (514)
Q Consensus 127 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~ 154 (514)
..++.++.++.|.-+|.++|+..-....
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 4788888899999999999987655443
No 381
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.10 E-value=1.1 Score=41.19 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=37.6
Q ss_pred CCCEEEEEeCCCcEEEEecCCCceee---eeecCCCcceeEEEECCCCCceeecCCCCeEE
Q 010256 409 DGGRVATGSYSNLFRVFGCSEGSAES---TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR 466 (514)
Q Consensus 409 ~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~ 466 (514)
.|.++++.-..+.|...+++.+.... ..+.....++..+++.|||.++++-+.+|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 34566655556788888876553321 22334455889999999999988887777764
No 382
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.05 E-value=1.5 Score=42.12 Aligned_cols=194 Identities=12% Similarity=0.076 Sum_probs=97.4
Q ss_pred eEEEEECCCCCEEEEe-c-C----CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC----
Q 010256 236 INSISNNSDGETFISA-D-D----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---- 305 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~-~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg---- 305 (514)
+...+++|++++++.+ + . ..++++|+++++..... +. ......+.|.+++ ..|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-------i~--~~~~~~~~W~~d~-~~~~y~~~~~~~~~ 195 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-------IE--NPKFSSVSWSDDG-KGFFYTRFDEDQRT 195 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-------EE--EEESEEEEECTTS-SEEEEEECSTTTSS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-------cc--ccccceEEEeCCC-CEEEEEEeCccccc
Confidence 4467899999999875 2 3 45999999977543221 11 1112349999998 4554444322
Q ss_pred -------eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE--e--C-CeEEEEEccCC-
Q 010256 306 -------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D--Y-MTLKLWDINMD- 372 (514)
Q Consensus 306 -------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--~--~-~~i~iwd~~~~- 372 (514)
.|+.|.+.+...-. ...|+....+ .....+..++|+++|+.. + . ..+.+.|+...
T Consensus 196 ~~~~~~~~v~~~~~gt~~~~d--~lvfe~~~~~----------~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 196 SDSGYPRQVYRHKLGTPQSED--ELVFEEPDEP----------FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp -CCGCCEEEEEEETTS-GGG---EEEEC-TTCT----------TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred ccCCCCcEEEEEECCCChHhC--eeEEeecCCC----------cEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 36777776544211 2333333211 125678899999998863 2 2 45777777752
Q ss_pred --CCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe---CCCcEEEEecCCCce--eeeeecCCCcc--
Q 010256 373 --SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS---YSNLFRVFGCSEGSA--ESTTLEASKNP-- 443 (514)
Q Consensus 373 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~--~~~~~~~~~~~-- 443 (514)
......+....... ....-+..+.+++... ..+.|.-.++..... ....+..+...
T Consensus 264 ~~~~~~~~l~~~~~~~---------------~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~ 328 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGV---------------EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS 328 (414)
T ss_dssp TSS-SEEEEEESSSS----------------EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE
T ss_pred CCcCCcEEEeCCCCce---------------EEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCcee
Confidence 12333333222111 0122222444444332 335677777776542 11245555543
Q ss_pred eeEEEECCCCCceeecCCCCeEEE
Q 010256 444 MRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 444 v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+..+... .+.+++....++.-+|
T Consensus 329 l~~~~~~-~~~Lvl~~~~~~~~~l 351 (414)
T PF02897_consen 329 LEDVSLF-KDYLVLSYRENGSSRL 351 (414)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEE
T ss_pred EEEEEEE-CCEEEEEEEECCccEE
Confidence 3333332 2234555556666555
No 383
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.75 E-value=0.3 Score=48.15 Aligned_cols=109 Identities=13% Similarity=0.074 Sum_probs=67.7
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEE--CCCCCceeecCCCCeEEEeeCC-------CCC
Q 010256 404 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ--TPSRPSRPLGSLSGVVRRVKGA-------DNS 474 (514)
Q Consensus 404 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~s~d~~v~i~~~~-------~~~ 474 (514)
+.-|.-++.-++-+....+.|||...+..+....-...+.|..+.| .|+++.+++.+....|.++... .+.
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence 3334444544444445579999998774332222244678888877 5899999999999999992211 111
Q ss_pred ccccC-Ccccccc-cceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 475 ALDAN-GNAFDFS-MKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 475 ~~~~~-~~~~~~~-~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
-..+. ....+++ ..|.+..|.++|. |++|+.++++||.
T Consensus 115 w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~sGNqlfv~d 154 (631)
T PF12234_consen 115 WAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGSGNQLFVFD 154 (631)
T ss_pred cceeEEEEeecCCCCCccceeEecCCe-EEEEeCCEEEEEC
Confidence 00000 1112333 6788999999998 5566788888874
No 384
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.71 E-value=2.1 Score=41.12 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=25.9
Q ss_pred cceEEEEEcCCCCeEEEe-cCCC----eEEEEEecCCcc
Q 010256 36 DIISAIEFDKSGDHLATG-DRGG----RVVLFERTDTRD 69 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg-~~dg----~i~iw~~~~~~~ 69 (514)
..+...++||||++||.+ +..| .|+++|+.+++.
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~ 162 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF 162 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC
Confidence 455578999999999865 3333 599999988864
No 385
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.65 E-value=1.4 Score=38.75 Aligned_cols=155 Identities=12% Similarity=0.126 Sum_probs=86.4
Q ss_pred CeEEEEECCCCCEEEEec--CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE-
Q 010256 235 HINSISNNSDGETFISAD--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID- 311 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd- 311 (514)
.+.+.+++++++.++... ++.-.+|-.......... + ....+....|++++ .+.+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-------~--~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-------L--TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-------c--cCCccccccccCCC-CEEEEEcCCCceEEEEe
Confidence 578899999999877642 444444444433333211 1 23367788999997 6666666666666663
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe----CCeEEEEEccCCCCc-eeeeeeccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGP-VATFQVHEHLR 386 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~~~i~iwd~~~~~~~-~~~~~~~~~~~ 386 (514)
...+... ....+... ....|.++.+||||..++.-. ++.|.+=-+.....- ...+.......
T Consensus 95 ~~~g~~~---~~~v~~~~----------~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~ 161 (253)
T PF10647_consen 95 SASGTGE---PVEVDWPG----------LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA 161 (253)
T ss_pred cCCCcce---eEEecccc----------cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec
Confidence 3333321 01111110 012799999999999888632 477877766532221 11111111000
Q ss_pred cccccccccCCccceeeEEEcCCCCEEEEEeCCC
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (514)
. .....+.+++|.+++.+++.+...+
T Consensus 162 ~--------~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 162 P--------PLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred c--------cccCcceeeeecCCCEEEEEeCCCC
Confidence 0 0111345899999999877665433
No 386
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=2 Score=40.50 Aligned_cols=158 Identities=11% Similarity=0.110 Sum_probs=101.5
Q ss_pred CeEEEEECCCCCEEEEe-c---CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEE
Q 010256 235 HINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 310 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~w 310 (514)
....++++++++.+..+ . ++++.+.|..+....... .....+ ..++++|+|...+++-..++.|.+.
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~--------~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi 187 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI--------PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVI 187 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE--------ecCCCc-ceEEECCCCCeEEEEecCCCeEEEE
Confidence 55689999999888876 3 588888888766544331 111123 8899999994355555578999999
Q ss_pred EcCCCcccc-ccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC----CeEEEEEccCCCCceee-eeeccc
Q 010256 311 DMRQSALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVAT-FQVHEH 384 (514)
Q Consensus 311 d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~----~~i~iwd~~~~~~~~~~-~~~~~~ 384 (514)
|........ ........ ......+.++|+|.++....+ +.+...|... +..... ......
T Consensus 188 ~~~~~~v~~~~~~~~~~~-------------~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~~ 253 (381)
T COG3391 188 DTSGNSVVRGSVGSLVGV-------------GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGSG 253 (381)
T ss_pred eCCCcceecccccccccc-------------CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEeccccccC
Confidence 977654421 00001111 123567899999998877533 4788888775 433332 221111
Q ss_pred cccccccccccCCccceeeEEEcCCCCEEEEEe-CCCcEEEEecCCC
Q 010256 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEG 430 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~ 430 (514)
. -..+.++|+|+++.... ..+.+.+.|..+.
T Consensus 254 ~---------------~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 254 A---------------PRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred C---------------CCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 0 11688999999988774 4488999998765
No 387
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.59 E-value=0.51 Score=46.63 Aligned_cols=114 Identities=11% Similarity=0.145 Sum_probs=69.7
Q ss_pred EEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEe--cCCCcEEEEEecCCeEEEEEcCC
Q 010256 238 SISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSSKGSIRLIDMRQ 314 (514)
Q Consensus 238 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~--p~~~~~l~~~~~dg~i~~wd~~~ 314 (514)
-+.-+.-++.-++- +..++.|||.+.+....+. .+ ...+.|..+.|. |++ +.+++.+..+.|.+|.-..
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~------~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R 105 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE------SF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLR 105 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEee------ee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccc
Confidence 33344444444444 6778999999866543321 23 346789999985 677 6777788888998885421
Q ss_pred -----CccccccccceeccCCCCccceeeccc-cceeEEEEecCCCEEEEEeCCeEEEEEcc
Q 010256 315 -----SALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARNGRHILSRDYMTLKLWDIN 370 (514)
Q Consensus 315 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~~~~~~i~iwd~~ 370 (514)
.......++.++ +..|+ .+|.+..|.++|.++++. ...+.|+|-.
T Consensus 106 ~dy~~~~p~w~~i~~i~----------i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 106 YDYTNKGPSWAPIRKID----------ISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKW 156 (631)
T ss_pred hhhhcCCcccceeEEEE----------eecCCCCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence 111111222222 22233 479999999998766654 4578888754
No 388
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.56 E-value=2.4 Score=40.87 Aligned_cols=156 Identities=12% Similarity=0.144 Sum_probs=78.1
Q ss_pred cceeEEEEeeCC--CCcEEEEeeCCCeEEEEEcCc-----cEEEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 113 EKINKIRWCQSA--NSALYLLSTNDKTIKLWKVQE-----KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 113 ~~v~~i~~~~~~--~~~~l~s~~~d~~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
+.|..+.|.|-. +-..+++....+.|.+|.+.- ++.......+..+.. ..-+....|.|....
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~----------pvLpQGCVWHPk~~i 126 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPF----------PVLPQGCVWHPKKAI 126 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCc----------ccCCCcccccCCCce
Confidence 569999998732 222566777789999998762 222211111111100 011226678888877
Q ss_pred cccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccC
Q 010256 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEI 263 (514)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~ 263 (514)
+.++.......+.-.-.++..++ . --.-.+.|.|.+|.+||+.|+.+ +.=.-++||-..
T Consensus 127 L~VLT~~dvSV~~sV~~d~srVk------------------a-Di~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 127 LTVLTARDVSVLPSVHCDSSRVK------------------A-DIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEEecCceeEeeeeeeCCceEE------------------E-eccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 73322211111111111111111 0 01334789999999999999988 444556787542
Q ss_pred CCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec
Q 010256 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS 303 (514)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~ 303 (514)
+ ......+. ....-.+.|.++.-.-+. .+|.+.+
T Consensus 188 -K-tL~~Csfc--PVFdv~~~Icsi~AT~ds--qVAvaTE 221 (671)
T PF15390_consen 188 -K-TLHRCSFC--PVFDVGGYICSIEATVDS--QVAVATE 221 (671)
T ss_pred -h-hhhhCCcc--eeecCCCceEEEEEeccc--eEEEEec
Confidence 2 21111111 112234566666655543 5555544
No 389
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.55 E-value=1.2 Score=37.34 Aligned_cols=135 Identities=10% Similarity=0.083 Sum_probs=77.0
Q ss_pred ccCeEEEEECCCCCEEEEe-c---------CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe
Q 010256 233 DYHINSISNNSDGETFISA-D---------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 302 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~-~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~ 302 (514)
..+.++-..+|+|++++-- . .|.++.|-.. .+.-.+ ...-.--..++|+.+...+.++-+
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i--------~~~v~IsNgl~Wd~d~K~fY~iDs 177 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELI--------WNCVGISNGLAWDSDAKKFYYIDS 177 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceee--------ehhccCCccccccccCcEEEEEcc
Confidence 4556677789999996543 2 2455555543 111111 111223357889888755666677
Q ss_pred cCCeEEEEE--cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeee
Q 010256 303 SKGSIRLID--MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATF 379 (514)
Q Consensus 303 ~dg~i~~wd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~ 379 (514)
.+-.|.-|| ..+|....+ ...++..... .+. + -..-.+++..+|.+.++.- .++|...|..+ ++.+.++
T Consensus 178 ln~~V~a~dyd~~tG~~snr-~~i~dlrk~~----~~e-~-~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~ei 249 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNR-KVIFDLRKSQ----PFE-S-LEPDGMTIDTEGNLYVATFNGGTVQKVDPTT-GKILLEI 249 (310)
T ss_pred CceEEeeeecCCCcccccCc-ceeEEeccCC----CcC-C-CCCCcceEccCCcEEEEEecCcEEEEECCCC-CcEEEEE
Confidence 788887787 566654321 1122221100 000 0 0122344456787777764 48999999998 9999988
Q ss_pred eecccc
Q 010256 380 QVHEHL 385 (514)
Q Consensus 380 ~~~~~~ 385 (514)
......
T Consensus 250 klPt~q 255 (310)
T KOG4499|consen 250 KLPTPQ 255 (310)
T ss_pred EcCCCc
Confidence 876543
No 390
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=0.36 Score=49.45 Aligned_cols=105 Identities=15% Similarity=0.261 Sum_probs=68.1
Q ss_pred CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccc
Q 010256 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (514)
Q Consensus 244 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 322 (514)
.+..++.| +.|.+-..|+...-... ..-....++|++++|+.+| .+++.|-.+|.|.+||+..++. .
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~-------~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~----l 165 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPL-------HQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKI----L 165 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchh-------hcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcc----e
Confidence 45567778 88888888887421110 0123347889999999999 8999999999999999998776 3
Q ss_pred cceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccC
Q 010256 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM 371 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~ 371 (514)
+.+..+..| + ..+-.+.+..++..+++++. |. +|.+..
T Consensus 166 ~~i~e~~ap--------~-t~vi~v~~t~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 166 KVITEHGAP--------V-TGVIFVGRTSQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred eeeeecCCc--------c-ceEEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence 333333211 1 12333444455666667655 54 676654
No 391
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.18 E-value=2.3 Score=38.26 Aligned_cols=237 Identities=13% Similarity=0.095 Sum_probs=108.3
Q ss_pred ccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccc-cCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 233 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
...+.+|.|..+..-+++|..+.| +....+......... .... ......+|.|..+ ..+++| ..+. .+.-
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~~g~i--l~T~DGG~tW~~~~~---~~~~~~~~~l~~I~f~~~--~g~ivG-~~g~-ll~T 86 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGAYGTI--LKTTDGGKTWQPVSL---DLDNPFDYHLNSISFDGN--EGWIVG-EPGL-LLHT 86 (302)
T ss_dssp SS-EEEEEESSSS-EEEEETTTEE--EEESSTTSS-EE--------S-----EEEEEEEETT--EEEEEE-ETTE-EEEE
T ss_pred CCceEEEEEecCCEEEEEecCCEE--EEECCCCcccccccc---CCCccceeeEEEEEecCC--ceEEEc-CCce-EEEe
Confidence 357889999977777888876754 444444443332111 0111 1234677888654 455544 4443 2333
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeecccccccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
...++. .+.+. +. .. +. +....+....++..++++..|. ||.....++.-..+.....
T Consensus 87 ~DgG~t-W~~v~-l~-~~-------lp---gs~~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~------- 144 (302)
T PF14870_consen 87 TDGGKT-WERVP-LS-SK-------LP---GSPFGITALGDGSAELAGDRGA--IYRTTDGGKTWQAVVSETS------- 144 (302)
T ss_dssp SSTTSS--EE------TT--------S---S-EEEEEEEETTEEEEEETT----EEEESSTTSSEEEEE-S---------
T ss_pred cCCCCC-cEEee-cC-CC-------CC---CCeeEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEcccCCc-------
Confidence 333332 11111 00 00 00 2233344434444444444343 4444433433222221110
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEee--
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK-- 469 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~-- 469 (514)
..+..+.-++||+++++++....+.-||.-..... ..-.....++..+.|.|++.+.+.+ ..|.++.-+
T Consensus 145 -------gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~-~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~ 215 (302)
T PF14870_consen 145 -------GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQ-PHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP 215 (302)
T ss_dssp ---------EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-E-EEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred -------ceeEeEEECCCCcEEEEECcccEEEEecCCCccce-EEccCccceehhceecCCCCEEEEe-CCcEEEEccCC
Confidence 11336778899999988766555567775433232 2233456789999999998876655 788888832
Q ss_pred -CCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEE
Q 010256 470 -GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 510 (514)
Q Consensus 470 -~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~ 510 (514)
....+.. ...+...-.-.+..++|.+++...|+++.+.++
T Consensus 216 ~~~~~w~~-~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~ 256 (302)
T PF14870_consen 216 DDGETWSE-PIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL 256 (302)
T ss_dssp TEEEEE----B-TTSS--S-EEEEEESSSS-EEEEESTT-EE
T ss_pred CCcccccc-ccCCcccCceeeEEEEecCCCCEEEEeCCccEE
Confidence 1111100 001111123458999999999988888777554
No 392
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.17 E-value=4.9 Score=42.00 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=50.7
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
+.-..+.|.++.+.|+.++...+.++|+++......+ ........|..+.-+|.....++.-+ ...|...|+.
T Consensus 204 s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l------~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~ 276 (765)
T PF10214_consen 204 SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYL------VTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVK 276 (765)
T ss_pred CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchh------ccCCChhheeeEEecCCccceEEEEe-cCeEEEEEcc
Confidence 4456788999989999998888999999865442212 12234577889988887433333333 3677777877
Q ss_pred CC
Q 010256 314 QS 315 (514)
Q Consensus 314 ~~ 315 (514)
..
T Consensus 277 ~~ 278 (765)
T PF10214_consen 277 SS 278 (765)
T ss_pred CC
Confidence 63
No 393
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.05 E-value=1.9 Score=36.78 Aligned_cols=64 Identities=11% Similarity=0.080 Sum_probs=37.7
Q ss_pred ECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 241 NNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 241 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
..+++..+..| .|++.+..|.++.....+. +.......+-+..|-. .-|+.+...|.+.--...
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVyks--------kcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKS--------KCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVTKN 165 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEec--------ccCCceeccceecCCC-ceEEEEeccceEEEEccC
Confidence 56778888888 8999999999876655432 2223333344556622 234445555655444433
No 394
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.00 E-value=0.11 Score=30.36 Aligned_cols=33 Identities=21% Similarity=0.598 Sum_probs=27.3
Q ss_pred CceEEEEEecCCC--cEEEEEecCCeEEEEEcCCC
Q 010256 283 EVITSAEFHPTHC--NMLAYSSSKGSIRLIDMRQS 315 (514)
Q Consensus 283 ~~i~~v~~~p~~~--~~l~~~~~dg~i~~wd~~~~ 315 (514)
+.++++.|+|... .+|+.+-..|.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3588999998763 58888888999999999963
No 395
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.92 E-value=5.3 Score=41.15 Aligned_cols=103 Identities=14% Similarity=0.124 Sum_probs=58.2
Q ss_pred CCccceeeEEEcCC-CCEEEEEeC----------CCcEEEEecCCCceeeeeecCC--CcceeEEEECCCCCceeecCCC
Q 010256 396 DSIFDKFECCLSGD-GGRVATGSY----------SNLFRVFGCSEGSAESTTLEAS--KNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 396 ~~~~~v~~~~~s~~-~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~s~d 462 (514)
+....+.++.|..| +.+++.|.. .|+|.||....++.+. .+..+ .+.+.++.. -+|++||.- .
T Consensus 772 E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~-~v~e~~v~Gav~aL~~-fngkllA~I--n 847 (1096)
T KOG1897|consen 772 ETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLE-LVAETVVKGAVYALVE-FNGKLLAGI--N 847 (1096)
T ss_pred ceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCcee-eeeeeeeccceeehhh-hCCeEEEec--C
Confidence 44444557779888 667777652 4889999888733332 22221 233333322 356666554 5
Q ss_pred CeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 463 GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 463 ~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
..|++++..... ++. ....+...+..+...-.+..|++|.
T Consensus 848 ~~vrLye~t~~~--eLr-~e~~~~~~~~aL~l~v~gdeI~VgD 887 (1096)
T KOG1897|consen 848 QSVRLYEWTTER--ELR-IECNISNPIIALDLQVKGDEIAVGD 887 (1096)
T ss_pred cEEEEEEccccc--eeh-hhhcccCCeEEEEEEecCcEEEEee
Confidence 678873322111 111 1123466778888888888888776
No 396
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.91 E-value=0.093 Score=43.54 Aligned_cols=143 Identities=11% Similarity=0.013 Sum_probs=77.7
Q ss_pred EEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccccee
Q 010256 247 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 247 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
++++..|+.|+-++++..+...+ .-.-+... ..+ +....-+++|+.+|.|.+|........ ...+.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~r-------se~~~~e~-~~v---~~~~~~~~vG~~dg~v~~~n~n~~g~~---~d~~~ 98 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCR-------SERFIDEG-QRV---VTASAKLMVGTSDGAVYVFNWNLEGAH---SDRVC 98 (238)
T ss_pred hccccCCcccccchhhhhhhhhh-------hhhhhhcc-eee---cccCceEEeecccceEEEecCCccchH---HHhhh
Confidence 44555788888888764432211 00111111 111 222267899999999999987632111 00000
Q ss_pred ccCCCCccceeeccccceeEE-EEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeE
Q 010256 327 EQEAPGTRSFFTEIIASISDI-KFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~i~~~-~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (514)
. ....|-+. .--.++.+..++ .++.|+.|++.. .+.+...-.|.... ....
T Consensus 99 s------------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~~~~--------------~e~~ 151 (238)
T KOG2444|consen 99 S------------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQHNFES--------------GEEL 151 (238)
T ss_pred c------------ccccceeccccccccceeEEeccCCceeeecccc-CceeeeeccccCCC--------------ccee
Confidence 0 00122222 222233345554 569999999985 77666666555211 1144
Q ss_pred EEcCCCCEEEEE--eCCCcEEEEecCCC
Q 010256 405 CLSGDGGRVATG--SYSNLFRVFGCSEG 430 (514)
Q Consensus 405 ~~s~~~~~l~s~--~~dg~i~iwd~~~~ 430 (514)
..+..+++|+.+ |.|..++.|++...
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhhh
Confidence 555566777777 77888888888643
No 397
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.88 E-value=0.77 Score=46.70 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=24.4
Q ss_pred cCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 395 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 395 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+...++|..+.++|+|.+|+..|..| |.|-.+.
T Consensus 81 ~~~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP 113 (717)
T PF10168_consen 81 NPPLFEVHQISLNPTGSLLALVGPRG-VVVLELP 113 (717)
T ss_pred CCCceeEEEEEECCCCCEEEEEcCCc-EEEEEec
Confidence 34556788999999999999888755 4454443
No 398
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.66 E-value=6 Score=40.54 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=53.6
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCC----------Cc--eeeeeccCCCcc-cccCCceEEEEEecCC--CcEE
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEIS----------NQ--SFNIVDVKPANM-EDLTEVITSAEFHPTH--CNML 298 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~----------~~--~~~~~~~~~~~~-~~~~~~i~~v~~~p~~--~~~l 298 (514)
..|..+.++|+|..++......|.|-.+... +. ..+.+.+...-+ ......|..+.|+|.+ ...|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 5788999999999998873344444444211 11 111121211112 2345678999999974 3688
Q ss_pred EEEecCCeEEEEEcCCCcc
Q 010256 299 AYSSSKGSIRLIDMRQSAL 317 (514)
Q Consensus 299 ~~~~~dg~i~~wd~~~~~~ 317 (514)
+.-+.|+.+|+||+.....
T Consensus 165 ~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred EEEecCCEEEEEecCCCCC
Confidence 8899999999999976443
No 399
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.60 E-value=2.3 Score=39.94 Aligned_cols=155 Identities=8% Similarity=-0.034 Sum_probs=76.4
Q ss_pred CceEEEEEecCCCcEEEEEe-----------cCC-eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 283 EVITSAEFHPTHCNMLAYSS-----------SKG-SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 283 ~~i~~v~~~p~~~~~l~~~~-----------~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
.....|+|.++| +++++-. ..+ .|.+++-.++.-.......|. ........+++.
T Consensus 14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa------------~~l~~p~Gi~~~ 80 (367)
T TIGR02604 14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA------------EELSMVTGLAVA 80 (367)
T ss_pred CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee------------cCCCCccceeEe
Confidence 446789999998 6666542 223 666665443321110011221 111346789999
Q ss_pred cCCCEEEEEeCCeEEEE-EccCCCCc----eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC------
Q 010256 351 RNGRHILSRDYMTLKLW-DINMDSGP----VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS------ 419 (514)
Q Consensus 351 ~~g~~l~~~~~~~i~iw-d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------ 419 (514)
++| ++++ +...|..+ |....++. ...+..-.... .+ .......++|.|||.+.++-+..
T Consensus 81 ~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~-----~~---~~~~~~~l~~gpDG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 81 VGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQI-----NN---HHHSLNSLAWGPDGWLYFNHGNTLASKVT 150 (367)
T ss_pred cCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCC-----Cc---ccccccCceECCCCCEEEecccCCCceec
Confidence 998 5554 33344433 44321111 11111100000 00 00012278999999877754421
Q ss_pred -------------CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCC
Q 010256 420 -------------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 420 -------------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d 462 (514)
|.|.-++...+. ....-.++ .....++|+++++++++-..+
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCe-EEEEecCc-CCCccceECCCCCEEEEccCC
Confidence 445555555432 22222333 334578999999887765543
No 400
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.54 E-value=4.1 Score=38.13 Aligned_cols=234 Identities=12% Similarity=0.104 Sum_probs=93.9
Q ss_pred CCCEEEE-e-cCCeEEEEeccCCCceeeeec-cCCCccc--ccCCceEEEEEecCCCcEEEEEe--c----CCeEEEEEc
Q 010256 244 DGETFIS-A-DDLRINLWNLEISNQSFNIVD-VKPANME--DLTEVITSAEFHPTHCNMLAYSS--S----KGSIRLIDM 312 (514)
Q Consensus 244 ~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~-~~~~~~~--~~~~~i~~v~~~p~~~~~l~~~~--~----dg~i~~wd~ 312 (514)
+.++|+. | .++.|++.|+.+.-...++.. +.+..+. ..-.....+..-|+| .+++++= . -|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G-~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG-RIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCc-cEEEEeccCCCCCCCCcEEEEcC
Confidence 3455555 5 899999999985433322211 1110111 011233455556777 6666542 2 245777777
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE--------------------eC-CeEEEEEccC
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--------------------DY-MTLKLWDINM 371 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--------------------~~-~~i~iwd~~~ 371 (514)
++.+.. ..++..... ...-..+-+.|..+.+++. .. .++.+||+..
T Consensus 165 ~tf~v~----g~We~~~~~---------~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~ 231 (461)
T PF05694_consen 165 ETFEVK----GRWEKDRGP---------QPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST 231 (461)
T ss_dssp TT--EE----EE--SB-TT---------------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT
T ss_pred cccccc----ceeccCCCC---------CCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC
Confidence 665542 223322110 1223445566655555542 12 5899999997
Q ss_pred CCCceeeeeeccccccccccccccCCccceeeEEEc--CCCCEEEE-EeCCCcEEE-EecCCCceee-eeec-------C
Q 010256 372 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS--GDGGRVAT-GSYSNLFRV-FGCSEGSAES-TTLE-------A 439 (514)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~s-~~~dg~i~i-wd~~~~~~~~-~~~~-------~ 439 (514)
.+.++++........ ...+.|. |+..+=++ +.-..+|.. |....+.... ++.+ +
T Consensus 232 -r~~~Q~idLg~~g~~-------------pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 232 -RKLLQTIDLGEEGQM-------------PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp -TEEEEEEES-TTEEE-------------EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred -CcEeeEEecCCCCCc-------------eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 888888876543210 1245554 44444332 223344444 4434443221 1111 1
Q ss_pred C------------CcceeEEEECCCCCcee-ecCCCCeEEEeeCCCCCccccCCc----------------ccccccceE
Q 010256 440 S------------KNPMRRQVQTPSRPSRP-LGSLSGVVRRVKGADNSALDANGN----------------AFDFSMKLL 490 (514)
Q Consensus 440 ~------------~~~v~~~~~~~~~~~l~-s~s~d~~v~i~~~~~~~~~~~~~~----------------~~~~~~~v~ 490 (514)
- ..-++.+.+|.|.++|. ++-..|.+|.++=..+....+.+. -....+...
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq 377 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ 377 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence 1 13368899999999875 445688898833332222111110 001234457
Q ss_pred EEEEcCCCCEEEEEe
Q 010256 491 HLAWHPSENSIACAA 505 (514)
Q Consensus 491 ~~~~spd~~~l~~~~ 505 (514)
-+..|-||+.|.+.+
T Consensus 378 MvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 378 MVQLSLDGKRLYVTN 392 (461)
T ss_dssp -EEE-TTSSEEEEE-
T ss_pred eEEEccCCeEEEEEe
Confidence 788999999988543
No 401
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.50 E-value=4 Score=41.08 Aligned_cols=120 Identities=15% Similarity=0.180 Sum_probs=70.6
Q ss_pred eEEEEEC--CCCCEEEEe-cCCeEEEEeccCCC-----------ceeeeeccCCCcccccCCceEEEEEe--cCCCcEEE
Q 010256 236 INSISNN--SDGETFISA-DDLRINLWNLEISN-----------QSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLA 299 (514)
Q Consensus 236 v~~~~~~--~~~~~l~s~-~d~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~i~~v~~~--p~~~~~l~ 299 (514)
|+-|... -..+.|+.+ +||.|.+|.+++-- .......++|.-.......+++++++ ... ++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEEE
Confidence 4444433 345677778 99999999764210 00000122332223345678999998 666 8999
Q ss_pred EEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC-----C-EEEEEeC-CeEEEEEc
Q 010256 300 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-----R-HILSRDY-MTLKLWDI 369 (514)
Q Consensus 300 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-----~-~l~~~~~-~~i~iwd~ 369 (514)
+++....|.||-+...... ...-+. ..|...|.+|.|-++. . .+++++= |.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r---~~~~~s----------~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDER---FYHVPS----------HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccc---cccccc----------cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9999999998876553211 000000 0134568899997643 2 4444443 88888887
No 402
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.45 E-value=0.14 Score=29.93 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=24.1
Q ss_pred ceeEEEEecCC---CEEEEEeC-CeEEEEEccC
Q 010256 343 SISDIKFARNG---RHILSRDY-MTLKLWDINM 371 (514)
Q Consensus 343 ~i~~~~~s~~g---~~l~~~~~-~~i~iwd~~~ 371 (514)
.+.++.|||.. .+|+...+ +.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 58999999844 48887777 9999999984
No 403
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.21 E-value=6.4 Score=39.01 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=22.1
Q ss_pred cCCC--cEEEEEecCCeEEEEEcCCCccc
Q 010256 292 PTHC--NMLAYSSSKGSIRLIDMRQSALC 318 (514)
Q Consensus 292 p~~~--~~l~~~~~dg~i~~wd~~~~~~~ 318 (514)
.+|. ..++.+..+|.+.+.|.++++.+
T Consensus 310 ~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 310 KDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 4552 37889999999999999999864
No 404
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.05 E-value=6.7 Score=39.62 Aligned_cols=166 Identities=13% Similarity=0.107 Sum_probs=90.1
Q ss_pred CCEEEEecCCeEEEEeccCCCceee-----eeccCCCccc---------ccCCceEEEEEecCC-CcEEEEEecCCeEEE
Q 010256 245 GETFISADDLRINLWNLEISNQSFN-----IVDVKPANME---------DLTEVITSAEFHPTH-CNMLAYSSSKGSIRL 309 (514)
Q Consensus 245 ~~~l~s~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~---------~~~~~i~~v~~~p~~-~~~l~~~~~dg~i~~ 309 (514)
.++++.+..+.|.+|+++....... .+..+|.... .....|+-|....-| ...|+.+..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 7788888889999999874333211 1111110000 022335555433222 258889999999999
Q ss_pred EEcCCCccccccccce----ec---cCCCCccceeeccccceeEEEEe--cCCCEEEEEeC-CeEEEEEccCCCCceeee
Q 010256 310 IDMRQSALCDTHSKLF----EE---QEAPGTRSFFTEIIASISDIKFA--RNGRHILSRDY-MTLKLWDINMDSGPVATF 379 (514)
Q Consensus 310 wd~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~i~~~~~s--~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~ 379 (514)
|.++.-... +... +. .....+ .+........++++++ ...++||+++. ..|.||-...........
T Consensus 129 Yyt~~I~~~---i~~~~~~~~~~~~r~~i~P-~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~ 204 (717)
T PF08728_consen 129 YYTETIIEA---IERFSEDNDSGFSRLKIKP-FFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHV 204 (717)
T ss_pred EEHHHHHHH---HHhhccccccccccccCCC-CeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccc
Confidence 987531100 0000 00 000000 1122233578999998 78888988877 788887765411111111
Q ss_pred eeccccccccccccccCCccceeeEEEcCCC---C---EEEEEeCCCcEEEEec
Q 010256 380 QVHEHLRPKLCDLYENDSIFDKFECCLSGDG---G---RVATGSYSNLFRVFGC 427 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~---~l~s~~~dg~i~iwd~ 427 (514)
..+... .. |-+|+|-++. . .|++++-.|.+.+|++
T Consensus 205 ~s~~~~----------hN---IP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 205 PSHQHS----------HN---IPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccc----------cC---CCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 111100 11 2277776543 2 7888999999999887
No 405
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.02 E-value=0.41 Score=49.36 Aligned_cols=152 Identities=12% Similarity=0.028 Sum_probs=90.7
Q ss_pred cCeEEEEECCCCCEEEEe---cCCeEEEEeccCCCceeeeeccCC----CcccccCCceEEEEEecCCCcEEEEEecCCe
Q 010256 234 YHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKP----ANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
.++..+...+|+...++. .+-.|..||+++-....... ..| ...........++.|+|.-+...+....|+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~-~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYET-TVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhh-ccccccccchhccccccccccccCCccchhhhhccccc
Confidence 345556666776665554 45578899987533221110 011 1111223445678899876666777888999
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccc
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL 385 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~ 385 (514)
|++..+...... ...++. ....++++|+|.|+.++.|.. |++.-|... .+....+.+...
T Consensus 180 l~V~~~~~~~~~---v~s~p~-------------t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip~Pp~- 240 (1405)
T KOG3630|consen 180 LRVKSTKQLAQN---VTSFPV-------------TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIPEPPV- 240 (1405)
T ss_pred hhhhhhhhhhhh---hcccCc-------------ccceeeEEeccccceeeEecCCCeEEEeecc--cceeecccCCCc-
Confidence 988776543221 122222 146899999999999999976 888887765 232333322221
Q ss_pred ccccccccccCCccceeeEEEcCCCCEEEE
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGDGGRVAT 415 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 415 (514)
...+.|.+++|-....+++.
T Consensus 241 ----------~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 241 ----------EENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ----------CCCcceeEEEEecceeEEEE
Confidence 11334678999877777664
No 406
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.84 E-value=4.8 Score=36.24 Aligned_cols=151 Identities=14% Similarity=0.169 Sum_probs=77.6
Q ss_pred cceeEEEEecCCCEEEEEeCCeE-EEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCC
Q 010256 342 ASISDIKFARNGRHILSRDYMTL-KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~~~~~~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (514)
+.+..+.-+++|++++++..|.+ .-||--. .. ...|.... -..+.++.|+|++.+.+.+ ..|
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~--~~---w~~~~r~~-----------~~riq~~gf~~~~~lw~~~-~Gg 207 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQ--TT---WQPHNRNS-----------SRRIQSMGFSPDGNLWMLA-RGG 207 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS----EEEE--S-----------SS-EEEEEE-TTS-EEEEE-TTT
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCC--cc---ceEEccCc-----------cceehhceecCCCCEEEEe-CCc
Confidence 67888999999999999988655 4566432 11 11221110 0124489999999887655 778
Q ss_pred cEEEEecCCCcee--eeeec--CCCcceeEEEECCCCCceeecCCCCeEEE-eeCCCCCccccCCcccccccceEEEEEc
Q 010256 421 LFRVFGCSEGSAE--STTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWH 495 (514)
Q Consensus 421 ~i~iwd~~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~l~s~s~d~~v~i-~~~~~~~~~~~~~~~~~~~~~v~~~~~s 495 (514)
.|++=+....... ..... .....+..+++.+++...|+|+.. ++.. .++.+.++..... ......++.+.|.
T Consensus 208 ~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l~~S~DgGktW~~~~~~--~~~~~n~~~i~f~ 284 (302)
T PF14870_consen 208 QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TLLVSTDGGKTWQKDRVG--ENVPSNLYRIVFV 284 (302)
T ss_dssp EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--EEEESSTTSS-EE-GGG--TTSSS---EEEEE
T ss_pred EEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cEEEeCCCCccceECccc--cCCCCceEEEEEc
Confidence 8877762211110 01111 122336788999998888877654 5554 6666665322111 1235678899998
Q ss_pred CCCCEEEEEecCcEEEE
Q 010256 496 PSENSIACAASNSLYMY 512 (514)
Q Consensus 496 pd~~~l~~~~~~~~~i~ 512 (514)
++.+-++.|.+.-+.-|
T Consensus 285 ~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 285 NPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp ETTEEEEE-STTEEEEE
T ss_pred CCCceEEECCCcEEEEe
Confidence 88888888776655443
No 407
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.50 E-value=0.096 Score=52.26 Aligned_cols=114 Identities=12% Similarity=0.122 Sum_probs=62.0
Q ss_pred CCcEEeceeeccccccccccccccccccCccCeEEEEECC---CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCccc
Q 010256 204 VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 279 (514)
Q Consensus 204 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 279 (514)
-|.+.+|+ +.-.+.....+...+....-...+.-+.|.| ..-++..+ ++++|++..+++.... + +.
T Consensus 152 vg~lfVy~-vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~--l-------~r 221 (1283)
T KOG1916|consen 152 VGELFVYD-VDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRS--L-------FR 221 (1283)
T ss_pred hhhhheee-hHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHH--H-------HH
Confidence 35667777 3333332222111111122223334455554 45667777 8899998877644331 1 22
Q ss_pred ccCCceEEE-----------EEecCCCcEEEEEecCCeEEEEEcCC-Cccccccccceecc
Q 010256 280 DLTEVITSA-----------EFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQ 328 (514)
Q Consensus 280 ~~~~~i~~v-----------~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~ 328 (514)
+|...+..+ ..+||| ..|+.++.||.++.|.+.- ++...+....++.+
T Consensus 222 sHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph 281 (1283)
T KOG1916|consen 222 SHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH 281 (1283)
T ss_pred hcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence 344333322 368999 8999999999999998753 33333334444444
No 408
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.44 E-value=9.3 Score=38.26 Aligned_cols=51 Identities=8% Similarity=0.023 Sum_probs=34.3
Q ss_pred eeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec-CCCcceeEEEECCC
Q 010256 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-ASKNPMRRQVQTPS 452 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~ 452 (514)
+..+..||+.++|+--..+|.|.+-+....+.. ..+. +...+...++|..+
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l-ce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDLSQIL-CEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecchhhhh-hccCCCCCCchHhceeecC
Confidence 347899999999999999999999887765333 3443 11223336666544
No 409
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.43 E-value=5.1 Score=35.21 Aligned_cols=176 Identities=9% Similarity=0.112 Sum_probs=95.4
Q ss_pred cCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010256 231 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~ 309 (514)
+-...+.++.|+|+.+.|.+. +...-.++=.. .+..++.+ .+.+. ...-.|.+..++ ++.++--.++.+.+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~-~Gdlirti-----PL~g~-~DpE~Ieyig~n-~fvi~dER~~~l~~ 154 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTK-EGDLIRTI-----PLTGF-SDPETIEYIGGN-QFVIVDERDRALYL 154 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEec-CCceEEEe-----ccccc-CChhHeEEecCC-EEEEEehhcceEEE
Confidence 444559999999999998887 55555554333 44444433 33332 224567887776 66666566888888
Q ss_pred EEcCCCcccccc-ccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccc-
Q 010256 310 IDMRQSALCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR- 386 (514)
Q Consensus 310 wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~- 386 (514)
+.+......... ...+.... ....+...-.++|+|..+.|..+.. .-+.||.+.. .. ..+..|....
T Consensus 155 ~~vd~~t~~~~~~~~~i~L~~-------~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~-~~--~~l~~~~~~~~ 224 (316)
T COG3204 155 FTVDADTTVISAKVQKIPLGT-------TNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ-SP--SSLSVHASLDP 224 (316)
T ss_pred EEEcCCccEEeccceEEeccc-------cCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec-CC--cccccccccCc
Confidence 877665322110 00111111 1111356788999998777777654 5566666553 11 1111111100
Q ss_pred cccccccccCCccceeeEEEcCC-CCEEEEEeCCCcEEEEecC
Q 010256 387 PKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~ 428 (514)
.....++ +.++.++.|++. +.+|+-+..++.+.-.|..
T Consensus 225 ~~~~~~f----~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 225 TADRDLF----VLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred ccccceE----eeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 0001111 123457788764 4556666666767666665
No 410
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.41 E-value=0.36 Score=40.24 Aligned_cols=65 Identities=11% Similarity=0.157 Sum_probs=40.2
Q ss_pred CCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEE-EecCCCcEEEEEecCCeEEEEEcCCCcc
Q 010256 245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE-FHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (514)
Q Consensus 245 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~-~~p~~~~~l~~~~~dg~i~~wd~~~~~~ 317 (514)
+..++.| .+|.|.+|........... .......|-++. -..++ .+..+++.||.|+.|++.-++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~-------~~s~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~ 136 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDR-------VCSGEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKV 136 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHh-------hhcccccceecccccccc-ceeEEeccCCceeeeccccCce
Confidence 4567777 9999999998733322211 111122233222 22233 5888999999999999877654
No 411
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.24 E-value=5.1 Score=37.66 Aligned_cols=113 Identities=9% Similarity=0.096 Sum_probs=55.2
Q ss_pred cCeEEEEECCCCCEEEEe-c-----------CC-eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEE
Q 010256 234 YHINSISNNSDGETFISA-D-----------DL-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 300 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~-----------d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~ 300 (514)
.....|+|.++|+++++- . .+ .|.+++-..+.-..... ..+.........+++.+++ +++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~----~vfa~~l~~p~Gi~~~~~G--lyV- 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKS----NVFAEELSMVTGLAVAVGG--VYV- 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCccee----EEeecCCCCccceeEecCC--EEE-
Confidence 345689999999988874 1 12 67666543222111000 0112223346789998886 444
Q ss_pred EecCCeEEEEEcCCCcccc-ccccceeccCCCCccceeeccccceeEEEEecCCCEEEE
Q 010256 301 SSSKGSIRLIDMRQSALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (514)
Q Consensus 301 ~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 358 (514)
++.....++.|........ +....+..-... -..+......++|.|||.+.++
T Consensus 87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~-----~~~~~~~~~~l~~gpDG~LYv~ 140 (367)
T TIGR02604 87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQ-----INNHHHSLNSLAWGPDGWLYFN 140 (367)
T ss_pred eCCCeEEEEeCCCCCCCCCCccEEEEEccCCC-----CCcccccccCceECCCCCEEEe
Confidence 3444333344543322111 101111110000 0001245778999999987776
No 412
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.23 E-value=1.8 Score=40.99 Aligned_cols=89 Identities=20% Similarity=0.271 Sum_probs=52.4
Q ss_pred cceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCcccc
Q 010256 399 FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDA 478 (514)
Q Consensus 399 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~ 478 (514)
+.|..+..++.|..++-.+.+|.+..+=.+.-++ ...++.....|.+-.+.-+.++..+.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~-~s~~eDgk~~v~CRt~~i~~~~ftss------------------- 163 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGK-NSEFEDGKSTVNCRTTPVAERFFTSS------------------- 163 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCc-cceecCCCceEEEEeecccceeeccC-------------------
Confidence 3566888999999999888888654432221111 12334344445555555444433222
Q ss_pred CCcccccccceEEEEEcCCC----CEEEEEecCcEEEEe
Q 010256 479 NGNAFDFSMKLLHLAWHPSE----NSIACAASNSLYMYY 513 (514)
Q Consensus 479 ~~~~~~~~~~v~~~~~spd~----~~l~~~~~~~~~i~~ 513 (514)
..-.+..++|||+. .+++..+++.+.+|+
T Consensus 164 ------~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~ 196 (741)
T KOG4460|consen 164 ------TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYS 196 (741)
T ss_pred ------CceeeeeccccCCccCCceEEEEecCcEEEEEe
Confidence 13456788999976 445566677777775
No 413
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.17 E-value=7.8 Score=36.62 Aligned_cols=148 Identities=12% Similarity=0.145 Sum_probs=83.3
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEE-EEccCCCCce-eeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCC
Q 010256 343 SISDIKFARNGRHILSRDYMTLKL-WDINMDSGPV-ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~~~i~i-wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (514)
....+..+++|.+++.+..|.+.. ||- +... ......... .+..+.|.+++.+++++ .+|
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~---G~~~W~~~~~~~~~--------------~l~~v~~~~dg~l~l~g-~~G 301 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWEP---GQPYWQPHNRASAR--------------RIQNMGWRADGGLWLLT-RGG 301 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecCC---CCcceEEecCCCcc--------------ceeeeeEcCCCCEEEEe-CCc
Confidence 355567788999999888765432 332 2221 111111110 13378899999988765 445
Q ss_pred cEEEEecCCCce----eeeeecC--CCcceeEEEECCCCCceeecCCCCeEEE-eeCCCCCccccCCcccccccceEEEE
Q 010256 421 LFRVFGCSEGSA----ESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLA 493 (514)
Q Consensus 421 ~i~iwd~~~~~~----~~~~~~~--~~~~v~~~~~~~~~~~l~s~s~d~~v~i-~~~~~~~~~~~~~~~~~~~~~v~~~~ 493 (514)
.+. +....+.. ....+.. ....+..+.+.+++..+++| .+|.+.. .++.+.++..... -.....++.+.
T Consensus 302 ~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D~G~tW~~~~~~--~~~~~~ly~v~ 377 (398)
T PLN00033 302 GLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTDGGKSWKRDKGA--DNIAANLYSVK 377 (398)
T ss_pred eEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCCCCcceeEcccc--CCCCcceeEEE
Confidence 543 33333321 1111111 22357888899887776666 5676666 5555554211111 11246788999
Q ss_pred EcCCCCEEEEEecCcEEEE
Q 010256 494 WHPSENSIACAASNSLYMY 512 (514)
Q Consensus 494 ~spd~~~l~~~~~~~~~i~ 512 (514)
|.++++.+++|...-+.-|
T Consensus 378 f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 378 FFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred EcCCCceEEEeCCcEEEEe
Confidence 9888888887776655544
No 414
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.95 E-value=8.7 Score=36.56 Aligned_cols=99 Identities=22% Similarity=0.273 Sum_probs=61.0
Q ss_pred cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCC
Q 010256 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (514)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 331 (514)
++..|.-.|.+..+..+.....+. . .......+..-...| ++|.++..|-|++||--.-..
T Consensus 535 S~~svFrIDPR~~gNKi~v~esKd--Y-~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rA-------------- 595 (776)
T COG5167 535 SDYSVFRIDPRARGNKIKVVESKD--Y-KTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRA-------------- 595 (776)
T ss_pred cccceEEecccccCCceeeeeehh--c-cccccccccccccCc--eEEEecCCCceeeehhhcchh--------------
Confidence 666676667665443222211110 0 112223344444455 899999999999999543221
Q ss_pred CccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccC
Q 010256 332 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371 (514)
Q Consensus 332 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~ 371 (514)
...+++....|..+..+.+|+++++.....+.+-|+.-
T Consensus 596 --KtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~i 633 (776)
T COG5167 596 --KTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPI 633 (776)
T ss_pred --hhcCcccccceeeeEeecCCcEEEEeecceEEEEeccc
Confidence 11234445689999999999999887667888888753
No 415
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.95 E-value=0.82 Score=42.26 Aligned_cols=158 Identities=8% Similarity=0.047 Sum_probs=86.4
Q ss_pred ccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCcccee-eEEEcCCCCEEEEEeCC
Q 010256 341 IASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF-ECCLSGDGGRVATGSYS 419 (514)
Q Consensus 341 ~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~d 419 (514)
-..+..+-..|||+.++.-+..++.++++.+ +++..-+.-+... ++....|+ ++..-..|.-|..++.|
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~--r~l~~rkl~~dsp--------g~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDK--RSLQIRKLVDDSP--------GDSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred ccchHhhEECCCCCEEEEecCCeEEEEeecc--cccchhhhhhcCC--------CchHHHHHHHHHHHhCceeEEEEcCC
Confidence 3578888999999999987667899999875 2221111111100 00000011 11122345567788899
Q ss_pred CcEEEE-ecCCCcee-eee---ecCCCcceeEEEECCCCCceeecCCCCeEEEe-eCCCCCccccCCcccccccceEEEE
Q 010256 420 NLFRVF-GCSEGSAE-STT---LEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV-KGADNSALDANGNAFDFSMKLLHLA 493 (514)
Q Consensus 420 g~i~iw-d~~~~~~~-~~~---~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~-~~~~~~~~~~~~~~~~~~~~v~~~~ 493 (514)
|.|.-| |+..+... ... ++-...++..+..-.+.+..++-+..|++... ...+.. -+.. ..-..+..++
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~--lL~~---~~~~~~~~~~ 364 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL--LLFE---RAYQAPQLVA 364 (733)
T ss_pred CceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc--eehh---hhhcCcceee
Confidence 988777 44433221 111 11112334344444455666777777777771 111111 0000 1123567899
Q ss_pred EcCCCCEEEEEecCcEEEEe
Q 010256 494 WHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 494 ~spd~~~l~~~~~~~~~i~~ 513 (514)
+||.+.+|+.-..+++.+++
T Consensus 365 ~Sp~~~~Ll~e~~gki~~~~ 384 (733)
T COG4590 365 MSPNQAYLLSEDQGKIRLAQ 384 (733)
T ss_pred eCcccchheeecCCceEEEE
Confidence 99999999988888877764
No 416
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.82 E-value=0.91 Score=38.75 Aligned_cols=79 Identities=9% Similarity=0.087 Sum_probs=52.3
Q ss_pred EecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEc
Q 010256 290 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI 369 (514)
Q Consensus 290 ~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~ 369 (514)
+..++ .++++-+.+|.+++||+.+++.....+.....-....... ......|..+.++.+|.-+++-++|..+.|+.
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~--~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSD--KSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhccccccc--CCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 34455 7899999999999999999876543311111100000000 02345789999999999998877788899987
Q ss_pred cC
Q 010256 370 NM 371 (514)
Q Consensus 370 ~~ 371 (514)
..
T Consensus 95 ~L 96 (219)
T PF07569_consen 95 DL 96 (219)
T ss_pred cc
Confidence 74
No 417
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.69 E-value=8.1 Score=35.57 Aligned_cols=168 Identities=12% Similarity=0.140 Sum_probs=84.3
Q ss_pred CCceEEEEEecCCCcEEEEEecCCe------EEEEEcCCCcccccccc-----ceeccCCCCccceeeccccceeEEEEe
Q 010256 282 TEVITSAEFHPTHCNMLAYSSSKGS------IRLIDMRQSALCDTHSK-----LFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 282 ~~~i~~v~~~p~~~~~l~~~~~dg~------i~~wd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
-+.+..+.+.|++ ..+++.+.+|. +..+++.........+. .+..... ..+....-..-++++.
T Consensus 19 ~GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G----~~~~~~~~D~Egi~~~ 93 (326)
T PF13449_consen 19 FGGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDG----QPFPKNGLDPEGIAVP 93 (326)
T ss_pred cCcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCC----CcCCcCCCChhHeEEe
Confidence 3567889999765 45666677777 55555544110000000 1111100 0011111245578887
Q ss_pred cCCCEEEEEe-C------CeEEEEEccCCCCceeeeeecccccccc---ccccccCCccceeeEEEcCCCCEEEEEeC--
Q 010256 351 RNGRHILSRD-Y------MTLKLWDINMDSGPVATFQVHEHLRPKL---CDLYENDSIFDKFECCLSGDGGRVATGSY-- 418 (514)
Q Consensus 351 ~~g~~l~~~~-~------~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-- 418 (514)
++|.++++.. + ..|.-++.. ++....+.......... .....|.. ..+++++|||+.|+++..
T Consensus 94 ~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G---~E~la~~~dG~~l~~~~E~~ 168 (326)
T PF13449_consen 94 PDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRG---FEGLAVSPDGRTLFAAMESP 168 (326)
T ss_pred cCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCC---eEEEEECCCCCEEEEEECcc
Confidence 8888888753 2 455555544 66655553333221111 12222333 338999999996665432
Q ss_pred ---CC--c-------EEE--EecCCCceee----eeecC-----CCcceeEEEECCCCCceeec
Q 010256 419 ---SN--L-------FRV--FGCSEGSAES----TTLEA-----SKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 419 ---dg--~-------i~i--wd~~~~~~~~----~~~~~-----~~~~v~~~~~~~~~~~l~s~ 459 (514)
|+ . ++| ||..+..... ..+.. ....+..+.+.+++++|+.=
T Consensus 169 l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 169 LKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred ccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 22 1 444 4544421111 12222 34667888999999877543
No 418
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.11 E-value=12 Score=36.03 Aligned_cols=59 Identities=10% Similarity=0.088 Sum_probs=38.1
Q ss_pred cCeEEEEECCCCCEEEEec-CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecC
Q 010256 234 YHINSISNNSDGETFISAD-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 293 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~ 293 (514)
...+.|+|.||+++|++-. .|.|++++....... .+..+..............|+++|+
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~-~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVK-VVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCcee-eeecCCceeccCCCCceeeEEECCC
Confidence 4568899999999888884 799999986543221 1111111011113677899999987
No 419
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.06 E-value=3.5 Score=38.04 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=37.0
Q ss_pred CeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecC
Q 010256 235 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 293 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~ 293 (514)
..++|+|.|+|++|++-..|.|++++.. +.....+... +............++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~-~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADL-PEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETT-TEECEEEEE--TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCC-CcCcceeccc-ccccccccCCcccceeccc
Confidence 4578999999988887799999999933 3321112111 1223344567899999994
No 420
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.02 E-value=2.3 Score=35.48 Aligned_cols=102 Identities=12% Similarity=0.069 Sum_probs=65.3
Q ss_pred CEEEEEeCCCcEEEEecCCCce-eeeeecCCCcceeEEEECCCCCceeecCCCC------eEEEeeCCCCCcc-------
Q 010256 411 GRVATGSYSNLFRVFGCSEGSA-ESTTLEASKNPMRRQVQTPSRPSRPLGSLSG------VVRRVKGADNSAL------- 476 (514)
Q Consensus 411 ~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~------~v~i~~~~~~~~~------- 476 (514)
..|+.+...+.|.+|++..... ....+..- +.|..+.++..|.||++--.+. .+|++-.|+....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4554446667899999984333 33444433 7888999999999999875442 4555222222100
Q ss_pred ccCC-----------------cccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 477 DANG-----------------NAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 477 ~~~~-----------------~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
.+.+ --+.....+.+++-.|-.--|++|+.+.+.+|.
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~ 161 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFT 161 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEE
Confidence 0001 011235678899999987778899999999985
No 421
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.97 E-value=15 Score=36.90 Aligned_cols=57 Identities=9% Similarity=0.165 Sum_probs=34.8
Q ss_pred CCCEEEEEeCCCc-----EEEEecCCCceeeee-ecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 409 DGGRVATGSYSNL-----FRVFGCSEGSAESTT-LEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 409 ~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
++.+++.|+.|+. |..||..+.+..... .......+. ...-+++..+.|+.|+.-++
T Consensus 475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g--~~~~~~~ly~vGG~~~~~~l 537 (571)
T KOG4441|consen 475 NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG--VVVLGGKLYAVGGFDGNNNL 537 (571)
T ss_pred CCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccccc--EEEECCEEEEEecccCcccc
Confidence 6777888887763 778998877654321 222222222 22336677788888887666
No 422
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.85 E-value=2.4 Score=40.00 Aligned_cols=37 Identities=24% Similarity=0.173 Sum_probs=31.9
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRD 69 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~ 69 (514)
.....+.+++.+|++++.|+.+.-|+|.++|+.++..
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v 341 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV 341 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence 3456799999999999999988889999999987764
No 423
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.81 E-value=9.4 Score=34.32 Aligned_cols=192 Identities=10% Similarity=0.076 Sum_probs=91.8
Q ss_pred eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCC----cEE-EEEecCCeEEEEEcCCCccccccccceeccC
Q 010256 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC----NML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (514)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~----~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 329 (514)
.|.+||+.+.+ ..+.+.+.+.... ..+.+..+++....+ .++ ++=+..+.|.++|+.+++.. +......
T Consensus 35 KLv~~Dl~t~~-li~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~----Rv~~~~~ 108 (287)
T PF03022_consen 35 KLVAFDLKTNQ-LIRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSW----RVLHNSF 108 (287)
T ss_dssp EEEEEETTTTC-EEEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEE----EEETCGC
T ss_pred EEEEEECCCCc-EEEEEECChHHcc-cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEE----EEecCCc
Confidence 56778888665 3344434332222 456788888876321 233 33334568999999998752 2222111
Q ss_pred CCCc--cce-----eeccccceeEEEEec---CCCEEEEEeCCeEEEEEccCC----CCceeeeeecccccccccccccc
Q 010256 330 APGT--RSF-----FTEIIASISDIKFAR---NGRHILSRDYMTLKLWDINMD----SGPVATFQVHEHLRPKLCDLYEN 395 (514)
Q Consensus 330 ~~~~--~~~-----~~~~~~~i~~~~~s~---~g~~l~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 395 (514)
.+.+ ..+ .......+..++.+| +++.|+-..-..-++|.+.+. ....... .. ...+..+...
T Consensus 109 ~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~-~~---~~~v~~lG~k 184 (287)
T PF03022_consen 109 SPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQ-AL---ASQVQDLGDK 184 (287)
T ss_dssp TTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH--H---HHT-EEEEE-
T ss_pred ceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccc-cc---cccceecccc
Confidence 1111 000 011223477788876 777787654333345554430 0000000 00 0000000000
Q ss_pred CCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCce--eeeeec--CC-CcceeEEEECC--CCCceee
Q 010256 396 DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA--ESTTLE--AS-KNPMRRQVQTP--SRPSRPL 458 (514)
Q Consensus 396 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~--~~-~~~v~~~~~~~--~~~~l~s 458 (514)
. ..--.++++++|.++++--..+.|..|+....-. ....+. .. ...+..+.+.+ ++.+.+.
T Consensus 185 ~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 185 G--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL 252 (287)
T ss_dssp ----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred C--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Confidence 0 0011688999999998888999999999885211 111121 12 34567777777 5554433
No 424
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.77 E-value=8.5 Score=37.41 Aligned_cols=108 Identities=5% Similarity=0.026 Sum_probs=63.7
Q ss_pred cceeEEEEecC----C-CEEEEEeCCeEEEEEccCC----CCceeeeeeccccccccccccccCCccceeeEEEcCCCCE
Q 010256 342 ASISDIKFARN----G-RHILSRDYMTLKLWDINMD----SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (514)
Q Consensus 342 ~~i~~~~~s~~----g-~~l~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 412 (514)
..|..+.|.|- - .+||.-....|.||-+... .+.+..-..+ +.....+... .+.|+|....
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcE---i~e~~pvLpQ-------GCVWHPk~~i 126 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCE---IREPFPVLPQ-------GCVWHPKKAI 126 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeee---ccCCcccCCC-------cccccCCCce
Confidence 46899999984 2 4677777789999998731 1222111111 1000001111 5789999998
Q ss_pred EEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeec
Q 010256 413 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 413 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
|+.-.....=.++++.......+.--...+.|.+.+|.+||+.|+.+
T Consensus 127 L~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVA 173 (671)
T PF15390_consen 127 LTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVA 173 (671)
T ss_pred EEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEE
Confidence 88665544444666654433332222455778889999998876554
No 425
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.76 E-value=7.9 Score=36.24 Aligned_cols=129 Identities=9% Similarity=0.047 Sum_probs=75.6
Q ss_pred eEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCC
Q 010256 236 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 315 (514)
-+.+-|+..++.|++...|.+.=|-..-.+.... +.--....++|.++.|++|. +.+|.--.+..|.+++....
T Consensus 25 sngvFfDDaNkqlfavrSggatgvvvkgpndDVp-----iSfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d 98 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVP-----ISFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPD 98 (657)
T ss_pred ccceeeccCcceEEEEecCCeeEEEEeCCCCCCC-----ceeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCC
Confidence 3445565556666655556666666653332211 11112245699999999998 89999999999999987433
Q ss_pred ccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeecc
Q 010256 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHE 383 (514)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~ 383 (514)
+.........+ ..+..|....|+.+ .-+|.-.+..+.+|-.....+.++..+.+.
T Consensus 99 ~~~l~~~~~ck------------~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~ 153 (657)
T KOG2377|consen 99 NSQLEYTQECK------------TKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHN 153 (657)
T ss_pred chhhHHHHHhc------------cCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcc
Confidence 22111111111 11245888889865 555555554577777665344455554444
No 426
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.29 E-value=4.8 Score=42.18 Aligned_cols=153 Identities=9% Similarity=0.045 Sum_probs=88.1
Q ss_pred cceeEEEEecCCCEEEEE--eC-CeEEEEEccCCCCc----eeeeeeccccccccccccccCCccceeeEEEcCCCCE-E
Q 010256 342 ASISDIKFARNGRHILSR--DY-MTLKLWDINMDSGP----VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-V 413 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~~--~~-~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l 413 (514)
-+|..+...+|+...++- +. -.|..||++.-... ...+..+.-.. + ...+ ..++.|+|.=.. .
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~------e--k~vf-~~~~~wnP~vp~n~ 171 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSF------E--KPVF-QLKNVWNPLVPLNS 171 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchh------c--cccc-cccccccCCccchh
Confidence 356666677787766653 22 47889998751110 11111111100 0 0000 226778876443 4
Q ss_pred EEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEE
Q 010256 414 ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLA 493 (514)
Q Consensus 414 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~ 493 (514)
+....|+.|++..+......... -......++++|+|.|+.++.|-..|++.-+.-......++..........|++|.
T Consensus 172 av~l~dlsl~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~ 250 (1405)
T KOG3630|consen 172 AVDLSDLSLRVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVT 250 (1405)
T ss_pred hhhccccchhhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEE
Confidence 45668899999887644322222 13345678999999999999999999877622221111122222222267899999
Q ss_pred EcCCCCEEEEE
Q 010256 494 WHPSENSIACA 504 (514)
Q Consensus 494 ~spd~~~l~~~ 504 (514)
|-....++++-
T Consensus 251 Wl~t~eflvvy 261 (1405)
T KOG3630|consen 251 WLSTQEFLVVY 261 (1405)
T ss_pred EecceeEEEEe
Confidence 98888877743
No 427
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=90.98 E-value=23 Score=38.15 Aligned_cols=21 Identities=5% Similarity=-0.043 Sum_probs=13.6
Q ss_pred ccccceeEEEEecCCCEEEEE
Q 010256 339 EIIASISDIKFARNGRHILSR 359 (514)
Q Consensus 339 ~~~~~i~~~~~s~~g~~l~~~ 359 (514)
-|..+.++++.+|-..-|..-
T Consensus 530 ~~leWPT~LaV~Pmdnsl~Vl 550 (1899)
T KOG4659|consen 530 LQLEWPTSLAVDPMDNSLLVL 550 (1899)
T ss_pred eeeecccceeecCCCCeEEEe
Confidence 345678889999954444443
No 428
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.61 E-value=6.8 Score=36.65 Aligned_cols=103 Identities=9% Similarity=0.127 Sum_probs=66.3
Q ss_pred cceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeee--eeccccccccccccccCCccceeeEEEcCCCCEEEEEeC
Q 010256 342 ASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATF--QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (514)
++|.++.||+|.+.+|.- ++++|.+++... .++...+ +..... . .|...+|+.. .-+|..+.
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~-d~~~l~~~~~ck~k~----------~---~IlGF~W~~s-~e~A~i~~ 131 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIP-DNSQLEYTQECKTKN----------A---NILGFCWTSS-TEIAFITD 131 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCC-CchhhHHHHHhccCc----------c---eeEEEEEecC-eeEEEEec
Confidence 689999999999999995 669999999853 2222211 111111 0 1347788755 55665554
Q ss_pred CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecC
Q 010256 419 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS 460 (514)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s 460 (514)
. .+.+|-...........+.|.-.|+-..+.++-+.++.++
T Consensus 132 ~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 132 Q-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred C-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 3 4677776655444456677777788788888877654443
No 429
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.53 E-value=16 Score=34.70 Aligned_cols=60 Identities=13% Similarity=0.034 Sum_probs=37.1
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeeecCCCcce--eEEEECCCCCceeecCCCCeEEE-eeCCCCC
Q 010256 412 RVATGSYSNLFRVFGCSEGSAESTTLEASKNPM--RRQVQTPSRPSRPLGSLSGVVRR-VKGADNS 474 (514)
Q Consensus 412 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~s~d~~v~i-~~~~~~~ 474 (514)
.++.++.++.+.||.=.+ +.-.-+....|| ....+..-...|++-+.+|.+.+ +-|.+|.
T Consensus 302 ~llV~t~t~~LlVy~d~~---L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 302 NLLVGTHTGTLLVYEDTT---LVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred EEEEEecCCeEEEEeCCe---EEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCc
Confidence 477888999999997442 222222223333 22233344668899999999999 5565554
No 430
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.48 E-value=14 Score=33.99 Aligned_cols=168 Identities=13% Similarity=0.136 Sum_probs=83.2
Q ss_pred cCeEEEEECC-CCCEEEEecCCe------EEEEeccCCC---ceeeeeccCCCccccc--------CCceEEEEEecCCC
Q 010256 234 YHINSISNNS-DGETFISADDLR------INLWNLEISN---QSFNIVDVKPANMEDL--------TEVITSAEFHPTHC 295 (514)
Q Consensus 234 ~~v~~~~~~~-~~~~l~s~~d~~------i~iwd~~~~~---~~~~~~~~~~~~~~~~--------~~~i~~v~~~p~~~ 295 (514)
+.++.+.+.+ ++.+++.++++. +..+++.... ....+.. ...+... ..-.-+|++.+++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~~~~G~~~~~~~~D~Egi~~~~~g- 96 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILD--MIPLRDPDGQPFPKNGLDPEGIAVPPDG- 96 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEecc--ceeccCCCCCcCCcCCCChhHeEEecCC-
Confidence 6678899985 455555557776 6555554311 1111111 0111111 1134478887777
Q ss_pred cEEEEEecC------CeEEEEEcCCCccccccccceeccCCCCccc---eeeccccceeEEEEecCCCEEEEE------e
Q 010256 296 NMLAYSSSK------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRS---FFTEIIASISDIKFARNGRHILSR------D 360 (514)
Q Consensus 296 ~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~s~~g~~l~~~------~ 360 (514)
.++++.-.+ ..|..++.. |... ..+..+....... .-...+..+-+++++|+|+.|++. .
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~----~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~ 171 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVI----RRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQ 171 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-Cccc----ceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccC
Confidence 666665556 678888866 5542 2221111100000 111234578999999999955542 1
Q ss_pred CC--e-------EEEEEccC--CCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEE
Q 010256 361 YM--T-------LKLWDINM--DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 415 (514)
Q Consensus 361 ~~--~-------i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 415 (514)
++ . ++|+.... .+.+...+...-...... .....+..+.+-+++++|+.
T Consensus 172 d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~------~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 172 DGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTA------PGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CCcccccccCceEEEEEecCCCCCccceEEEEeCCccccc------cCCCCceeEEEECCCcEEEE
Confidence 21 2 55655543 233333333222110000 02234557888889987763
No 431
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.40 E-value=7.4 Score=31.86 Aligned_cols=33 Identities=15% Similarity=0.332 Sum_probs=25.8
Q ss_pred cceeEEEEeeCC----CCcEEEEeeCCCeEEEEEcCc
Q 010256 113 EKINKIRWCQSA----NSALYLLSTNDKTIKLWKVQE 145 (514)
Q Consensus 113 ~~v~~i~~~~~~----~~~~l~s~~~d~~i~iw~~~~ 145 (514)
..|..++|+|.. .+.+|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999998832 245677789999999998774
No 432
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=90.36 E-value=12 Score=35.07 Aligned_cols=169 Identities=13% Similarity=0.064 Sum_probs=86.2
Q ss_pred ccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceee-eeccCCCcccccCCceE-EEEEecCCCcEEEEEecCCeE
Q 010256 230 HAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN-IVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~i~-~v~~~p~~~~~l~~~~~dg~i 307 (514)
..--..|..+-..|||+.+..-...++.++++.+.....+ +.+-.|. .....|+ ++..-..| .-+..++.||.|
T Consensus 217 ~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg---~~~~~Vte~l~lL~Gg-~SLLv~~~dG~v 292 (733)
T COG4590 217 SVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPG---DSRHQVTEQLYLLSGG-FSLLVVHEDGLV 292 (733)
T ss_pred CCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCC---chHHHHHHHHHHHhCc-eeEEEEcCCCce
Confidence 4444667788899999998877558888998874332211 1111110 0001121 11112223 567778888888
Q ss_pred EEE-EcCCCcc-ccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccc
Q 010256 308 RLI-DMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH 384 (514)
Q Consensus 308 ~~w-d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~ 384 (514)
.-| |.+.+.. ...+++.++... .++..+.-..+.+-+++-+. |++.++.... .+++-.-...+.
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~p------------a~~~~l~pe~~rkgF~~l~~~G~L~~f~st~-~~~lL~~~~~~~ 359 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAP------------AEVQFLLPETNRKGFYSLYRNGTLQSFYSTS-EKLLLFERAYQA 359 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCc------------ccceeeccccccceEEEEcCCCceeeeeccc-CcceehhhhhcC
Confidence 766 5554322 111122221110 12222222223334444333 6676665543 332221111111
Q ss_pred cccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCce
Q 010256 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 432 (514)
. .-+++||.+.+|++- +.|.++++.+++...
T Consensus 360 ~----------------~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 360 P----------------QLVAMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred c----------------ceeeeCcccchheee-cCCceEEEEecCCCC
Confidence 1 158899999999864 457899999987533
No 433
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.01 E-value=1.8 Score=36.93 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=47.6
Q ss_pred ECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCccc-------ccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 241 NNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME-------DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 241 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
+...+++|++- .+|.+++||+.+.+..+.-+.+.| -+. .....|..+.++.+| .-+++-+ +|....|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~p-ll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAP-LLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHH-HhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEecc
Confidence 44567777777 999999999997765543322222 111 355778889999888 5566544 577888886
Q ss_pred CC
Q 010256 313 RQ 314 (514)
Q Consensus 313 ~~ 314 (514)
.-
T Consensus 95 ~L 96 (219)
T PF07569_consen 95 DL 96 (219)
T ss_pred cc
Confidence 54
No 434
>PHA02713 hypothetical protein; Provisional
Probab=89.63 E-value=13 Score=37.27 Aligned_cols=23 Identities=0% Similarity=0.023 Sum_probs=17.3
Q ss_pred CCCcEEEEEecCC--eEEEEEcCCCc
Q 010256 293 THCNMLAYSSSKG--SIRLIDMRQSA 316 (514)
Q Consensus 293 ~~~~~l~~~~~dg--~i~~wd~~~~~ 316 (514)
++ .+.++|+.++ .+..||..+.+
T Consensus 512 ~~-~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 512 DN-TIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CC-EEEEEeeecceeehhhcCccccc
Confidence 45 7889999888 67777777654
No 435
>PRK10115 protease 2; Provisional
Probab=89.31 E-value=4 Score=41.96 Aligned_cols=100 Identities=4% Similarity=-0.019 Sum_probs=57.9
Q ss_pred ceeEEEEecCCCEEEEEe-----C-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE
Q 010256 343 SISDIKFARNGRHILSRD-----Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 416 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~-----~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 416 (514)
.+..+.+||||++|+.+. + ..|++.|+.+ +..+........ ..++|++|++.|+..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t-g~~l~~~i~~~~-----------------~~~~w~~D~~~~~y~ 189 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET-GNWYPELLDNVE-----------------PSFVWANDSWTFYYV 189 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC-CCCCCccccCcc-----------------eEEEEeeCCCEEEEE
Confidence 467788999999998642 2 5788888875 543222111110 168999999876655
Q ss_pred eCC------CcEEEEecCCCcee-eeeecCCCccee-EEEECCCCCceeecC
Q 010256 417 SYS------NLFRVFGCSEGSAE-STTLEASKNPMR-RQVQTPSRPSRPLGS 460 (514)
Q Consensus 417 ~~d------g~i~iwd~~~~~~~-~~~~~~~~~~v~-~~~~~~~~~~l~s~s 460 (514)
..+ ..|+.+++.++... ...++....... ....+.++++++..+
T Consensus 190 ~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~ 241 (686)
T PRK10115 190 RKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHL 241 (686)
T ss_pred EecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEE
Confidence 432 36788888876322 234443333333 223344777654443
No 436
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.92 E-value=15 Score=32.11 Aligned_cols=194 Identities=12% Similarity=0.131 Sum_probs=98.6
Q ss_pred ccceEEEEEcCCCCeEEEecCCC--eEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
....-.+.|..+|.++-+.+.-| .|+.+|+.+++... ...+...- ..
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~---------------------~~~l~~~~----------Fg 92 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQ---------------------SVPLPPRY----------FG 92 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEE---------------------EEE-TTT------------E
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEE---------------------EEECCccc----------cc
Confidence 34566788877787777776655 78999998887430 00111000 00
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|+-+ ++++....=.++...+||..+.+.......... .--...|++.+
T Consensus 93 EGit~~------~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~E------------------GWGLt~dg~~L------ 142 (264)
T PF05096_consen 93 EGITIL------GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGE------------------GWGLTSDGKRL------ 142 (264)
T ss_dssp EEEEEE------TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--------------------EEEECSSCE------
T ss_pred eeEEEE------CCEEEEEEecCCeEEEEccccceEEEEEecCCc------------------ceEEEcCCCEE------
Confidence 111111 122333344568899999998877776665521 11223566666
Q ss_pred CCCCcccCCCCCCcEEeceeecccccccccccccccc-ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
+.......+.++| ..+.+. ........ ...-..++.+.+- +|...|=. ....|...|..++. ....
T Consensus 143 ------i~SDGS~~L~~~d-P~~f~~---~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~-V~~~ 210 (264)
T PF05096_consen 143 ------IMSDGSSRLYFLD-PETFKE---VRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK-VVGW 210 (264)
T ss_dssp ------EEE-SSSEEEEE--TTT-SE---EEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B-EEEE
T ss_pred ------EEECCccceEEEC-Ccccce---EEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe-EEEE
Confidence 6666666777666 222111 11111100 1112345666665 56555556 67778888888654 3333
Q ss_pred eccCC--------CcccccCCceEEEEEecCCCcEEEEE
Q 010256 271 VDVKP--------ANMEDLTEVITSAEFHPTHCNMLAYS 301 (514)
Q Consensus 271 ~~~~~--------~~~~~~~~~i~~v~~~p~~~~~l~~~ 301 (514)
+++.. .......+-.+.|++.|....+++||
T Consensus 211 iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 211 IDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 33221 00011246688999999886667766
No 437
>PRK13684 Ycf48-like protein; Provisional
Probab=88.83 E-value=19 Score=33.23 Aligned_cols=153 Identities=8% Similarity=0.050 Sum_probs=85.1
Q ss_pred cceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCc
Q 010256 342 ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 421 (514)
..+.++.+.|++.+++++..|.+..- .+..++.-........ ..++++.+.++++.++.+ ..|.
T Consensus 173 g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~~~~~~--------------~~l~~i~~~~~g~~~~vg-~~G~ 236 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPHQRNSS--------------RRLQSMGFQPDGNLWMLA-RGGQ 236 (334)
T ss_pred ceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEeeCCCc--------------ccceeeeEcCCCCEEEEe-cCCE
Confidence 56889999999988888877755432 1111222222221111 113378899999877765 4465
Q ss_pred EEEEecCCCce-eeeeec--CCCcceeEEEECCCCCceeecCCCCeEEE-eeCCCCCccccCCcccccccceEEEEEcCC
Q 010256 422 FRVFGCSEGSA-ESTTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPS 497 (514)
Q Consensus 422 i~iwd~~~~~~-~~~~~~--~~~~~v~~~~~~~~~~~l~s~s~d~~v~i-~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 497 (514)
+++=....+.. ...... .....+.++.+.+++..++.+ .+|.+.. .++.+.+....... ......+.+.|..+
T Consensus 237 ~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~S~d~G~tW~~~~~~~--~~~~~~~~~~~~~~ 313 (334)
T PRK13684 237 IRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLVSKDGGKTWEKDPVGE--EVPSNFYKIVFLDP 313 (334)
T ss_pred EEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEEeCCCCCCCeECCcCC--CCCcceEEEEEeCC
Confidence 54322333311 101111 122346788888887766554 5777766 44444432111000 12346788999888
Q ss_pred CCEEEEEecCcEEEEe
Q 010256 498 ENSIACAASNSLYMYY 513 (514)
Q Consensus 498 ~~~l~~~~~~~~~i~~ 513 (514)
++.+++|....+.-|.
T Consensus 314 ~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 314 EKGFVLGQRGVLLRYV 329 (334)
T ss_pred CceEEECCCceEEEec
Confidence 8888887777666553
No 438
>PHA02713 hypothetical protein; Provisional
Probab=88.68 E-value=18 Score=36.29 Aligned_cols=54 Identities=9% Similarity=0.009 Sum_probs=32.0
Q ss_pred CCCEEEEEeCC------CcEEEEecCC-Cceee-eeecCCCcceeEEEECCCCCceeecCCCCe
Q 010256 409 DGGRVATGSYS------NLFRVFGCSE-GSAES-TTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (514)
Q Consensus 409 ~~~~l~s~~~d------g~i~iwd~~~-~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~ 464 (514)
++++.+.|+.+ ..+..||..+ .+... ..+.........++ -++++.++|+.|+.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~ 524 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESY 524 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecce
Confidence 56777777654 2467899887 44432 33333333333333 37788888888873
No 439
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.37 E-value=5.1 Score=32.80 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=24.1
Q ss_pred ceeeEEEcCCC------CEEEEEeCCCcEEEEecCC
Q 010256 400 DKFECCLSGDG------GRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 400 ~v~~~~~s~~~------~~l~s~~~dg~i~iwd~~~ 429 (514)
.+..++|||-| -+|++.+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 35589999954 3788899999999998763
No 440
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.24 E-value=15 Score=35.15 Aligned_cols=137 Identities=12% Similarity=0.037 Sum_probs=80.8
Q ss_pred CCCEEEE-EeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC--------CCEEEEEeCCCc
Q 010256 352 NGRHILS-RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD--------GGRVATGSYSNL 421 (514)
Q Consensus 352 ~g~~l~~-~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--------~~~l~s~~~dg~ 421 (514)
+..+|+. |.. ..++-.|+.. ++.+..+..+... -+.|.|+ .+.|+--| +..
T Consensus 478 dssli~~dg~~~~kLykmDIEr-GkvveeW~~~ddv-----------------vVqy~p~~kf~qmt~eqtlvGlS-~~s 538 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIER-GKVVEEWDLKDDV-----------------VVQYNPYFKFQQMTDEQTLVGLS-DYS 538 (776)
T ss_pred CcceEEecCCCcccceeeeccc-ceeeeEeecCCcc-----------------eeecCCchhHHhcCccceEEeec-ccc
Confidence 4455554 444 7788888887 8888888877754 3445553 23444334 444
Q ss_pred EEEEecCCCceeeeeecCCCcceeE----EEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCC
Q 010256 422 FRVFGCSEGSAESTTLEASKNPMRR----QVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPS 497 (514)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 497 (514)
|.-.|.+-....+. ........+. ........|+|.+|..|-||+++.-... ......+....|..+.-+.+
T Consensus 539 vFrIDPR~~gNKi~-v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r---AKtalP~lG~aIk~idvta~ 614 (776)
T COG5167 539 VFRIDPRARGNKIK-VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR---AKTALPGLGDAIKHIDVTAN 614 (776)
T ss_pred eEEecccccCCcee-eeeehhccccccccccccccCceEEEecCCCceeeehhhcch---hhhcCcccccceeeeEeecC
Confidence 44445443322211 1111222222 2223456699999999999993322111 11122236789999999999
Q ss_pred CCEEEEEecCcEEE
Q 010256 498 ENSIACAASNSLYM 511 (514)
Q Consensus 498 ~~~l~~~~~~~~~i 511 (514)
|++|++.+.+.+.+
T Consensus 615 Gk~ilaTCk~yllL 628 (776)
T COG5167 615 GKHILATCKNYLLL 628 (776)
T ss_pred CcEEEEeecceEEE
Confidence 99999888876655
No 441
>PRK13684 Ycf48-like protein; Provisional
Probab=88.06 E-value=22 Score=32.90 Aligned_cols=104 Identities=16% Similarity=0.083 Sum_probs=58.6
Q ss_pred eeEEEcCCCCEEEEEeCCCcEEE-EecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE--eeCCCCCcccc
Q 010256 402 FECCLSGDGGRVATGSYSNLFRV-FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNSALDA 478 (514)
Q Consensus 402 ~~~~~s~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i--~~~~~~~~~~~ 478 (514)
..+.+.|++.+++++. .|.+.. ++-...... .........++.+.+.++++.++.+ ..|.+++ .++...+.. .
T Consensus 176 ~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~-~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~-~ 251 (334)
T PRK13684 176 RNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWT-PHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSK-P 251 (334)
T ss_pred EEEEECCCCeEEEEeC-CceEEEEcCCCCCeEE-EeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccc-c
Confidence 3788899987776654 454432 222111121 1222344678889999999887765 5677766 233333321 1
Q ss_pred CCcccccccceEEEEEcCCCCEEEEEecCcE
Q 010256 479 NGNAFDFSMKLLHLAWHPSENSIACAASNSL 509 (514)
Q Consensus 479 ~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~ 509 (514)
..........+.++++.|++..++++....+
T Consensus 252 ~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v 282 (334)
T PRK13684 252 IIPEITNGYGYLDLAYRTPGEIWAGGGNGTL 282 (334)
T ss_pred cCCccccccceeeEEEcCCCCEEEEcCCCeE
Confidence 1100112345788999998887776655433
No 442
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.70 E-value=26 Score=33.27 Aligned_cols=155 Identities=9% Similarity=0.090 Sum_probs=81.9
Q ss_pred eEEEEECCCCCEEEEecCCeEE-EEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCC
Q 010256 236 INSISNNSDGETFISADDLRIN-LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~ 314 (514)
...+..++++.+++.+..|.+. -||-- +.....+ . ......++++.+.+++ .++++ +..|.+.. ....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G--~~~W~~~-----~-~~~~~~l~~v~~~~dg-~l~l~-g~~G~l~~-S~d~ 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPG--QPYWQPH-----N-RASARRIQNMGWRADG-GLWLL-TRGGGLYV-SKGT 309 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCC--CcceEEe-----c-CCCccceeeeeEcCCC-CEEEE-eCCceEEE-ecCC
Confidence 4556678888888888656543 34432 2111110 1 1124568899999998 56654 46666543 3333
Q ss_pred CccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccc
Q 010256 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 394 (514)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (514)
+..- . ...|..... ......+.++.|.+++..+++|..|.+....-. ++.-..........
T Consensus 310 G~~~-~-~~~f~~~~~-------~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~--G~tW~~~~~~~~~~-------- 370 (398)
T PLN00033 310 GLTE-E-DFDFEEADI-------KSRGFGILDVGYRSKKEAWAAGGSGILLRSTDG--GKSWKRDKGADNIA-------- 370 (398)
T ss_pred CCcc-c-ccceeeccc-------CCCCcceEEEEEcCCCcEEEEECCCcEEEeCCC--CcceeEccccCCCC--------
Confidence 3210 0 001111100 001135889999999999999988876665422 44333322111110
Q ss_pred cCCccceeeEEEcCCCCEEEEEeCCCcEEEE
Q 010256 395 NDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (514)
Q Consensus 395 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (514)
.. .+.+.|.++++.+++| .+|.|.-|
T Consensus 371 -~~---ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 371 -AN---LYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred -cc---eeEEEEcCCCceEEEe-CCcEEEEe
Confidence 11 2378888777766654 55766544
No 443
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.53 E-value=19 Score=30.60 Aligned_cols=96 Identities=6% Similarity=0.094 Sum_probs=60.4
Q ss_pred ceeEEEEecCCCEEEEEeC--CeEEEEEccCC-CC-----ceeeeeeccccccccccccccCCccceeeEEEcCCCCEEE
Q 010256 343 SISDIKFARNGRHILSRDY--MTLKLWDINMD-SG-----PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA 414 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 414 (514)
--+.++|+.+.+.+..-+. -.|.-||.+-+ +. .+..++..+.... ... + .+++..+|++.+
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~----~~P-D------Gm~ID~eG~L~V 227 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES----LEP-D------GMTIDTEGNLYV 227 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC----CCC-C------cceEccCCcEEE
Confidence 3467889888887776543 67777884421 21 1211211110000 000 1 466677899888
Q ss_pred EEeCCCcEEEEecCCCceeeeeecCCCcceeEEEEC
Q 010256 415 TGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQT 450 (514)
Q Consensus 415 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 450 (514)
+.-..++|.-.|..+|+ ++.++.-....+++++|-
T Consensus 228 a~~ng~~V~~~dp~tGK-~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 228 ATFNGGTVQKVDPTTGK-ILLEIKLPTPQITSCCFG 262 (310)
T ss_pred EEecCcEEEEECCCCCc-EEEEEEcCCCceEEEEec
Confidence 88888999999999984 446777678889999995
No 444
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=86.46 E-value=47 Score=34.98 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=78.6
Q ss_pred CccCeEEEEEC---C----CCCEEEEecCCeEEEEeccCCCc------eeeeeccCC-Ccc---cccCCceEEEEEecCC
Q 010256 232 HDYHINSISNN---S----DGETFISADDLRINLWNLEISNQ------SFNIVDVKP-ANM---EDLTEVITSAEFHPTH 294 (514)
Q Consensus 232 h~~~v~~~~~~---~----~~~~l~s~~d~~i~iwd~~~~~~------~~~~~~~~~-~~~---~~~~~~i~~v~~~p~~ 294 (514)
-..+|..|+|. . ...+|++=....+.|+...-.+. ....++..| ..+ .....+...++|+|..
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 44678888887 2 12355544777788877321111 111111111 011 1134566799999987
Q ss_pred CcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccC
Q 010256 295 CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371 (514)
Q Consensus 295 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~ 371 (514)
...||.....|...|||+.................. +....-....+....+.|.++-..|+.++...+.++|++.
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~-gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~ 233 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNIS-GSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFES 233 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccCCC-ccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCC
Confidence 789999999999999999322211100000110000 0000001111455678999888888888888999999986
No 445
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.58 E-value=20 Score=29.92 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=17.3
Q ss_pred CCCeEEEecC--CCeEEEEEecCCccc
Q 010256 46 SGDHLATGDR--GGRVVLFERTDTRDN 70 (514)
Q Consensus 46 ~g~~l~tg~~--dg~i~iw~~~~~~~~ 70 (514)
+|.++.+.+. ...|++||+.+++..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~ 81 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEI 81 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEE
Confidence 5566666553 347999999988754
No 446
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=85.42 E-value=15 Score=28.24 Aligned_cols=113 Identities=10% Similarity=0.073 Sum_probs=65.4
Q ss_pred EEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEec----CCCcEEEEEecCCeEEEEEcC
Q 010256 239 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP----THCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 239 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p----~~~~~l~~~~~dg~i~~wd~~ 313 (514)
-.|......|+++ .-+.|.|++.......... .-.+..+-.....|++++-.+ ++...|+.|+. ..+..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGR-QDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCcccccccc-ccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence 3466666677877 8899999987643321100 000012222456677776544 22356666665 578899998
Q ss_pred CCccccccccceeccCCCCccceeeccccceeEEEEec----CCCEEEEEeCCeEEEEEcc
Q 010256 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR----NGRHILSRDYMTLKLWDIN 370 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~----~g~~l~~~~~~~i~iwd~~ 370 (514)
...... .+.-...+.++.+-. ...+++.|+...|.-||..
T Consensus 82 ~N~d~F-----------------yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 82 NNSDLF-----------------YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred cCchhh-----------------hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 765421 111124577776643 4556777777777777765
No 447
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=85.04 E-value=43 Score=33.33 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=19.5
Q ss_pred EEEEeeCCCeEEEEEcCccEEEEE
Q 010256 128 LYLLSTNDKTIKLWKVQEKKVKKV 151 (514)
Q Consensus 128 ~l~s~~~d~~i~iw~~~~~~~~~~ 151 (514)
.++.++.|+.+.-.|.++|+..-.
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEee
Confidence 677788899999999999886554
No 448
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.43 E-value=0.23 Score=46.20 Aligned_cols=134 Identities=12% Similarity=0.055 Sum_probs=85.9
Q ss_pred ceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cC
Q 010256 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD 253 (514)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d 253 (514)
...|-+.+.-+ +.++.+..+..|| -... ........+...+++|+.++..++.. ..
T Consensus 39 ~~~w~~e~~nl------------avaca~tiv~~YD-~agq---------~~le~n~tg~aldm~wDkegdvlavlAek~ 96 (615)
T KOG2247|consen 39 IHRWRPEGHNL------------AVACANTIVIYYD-KAGQ---------VILELNPTGKALDMAWDKEGDVLAVLAEKT 96 (615)
T ss_pred eeeEecCCCce------------ehhhhhhHHHhhh-hhcc---------eecccCCchhHhhhhhccccchhhhhhhcC
Confidence 45677777666 7888888888777 1110 00112233555678888888776654 78
Q ss_pred CeEEEEeccCCCceeeeeccCCCcccc-cCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCC
Q 010256 254 LRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (514)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 332 (514)
+.+.+||+.+.... .++. ....-.=+.|++.. ..++.+...|.+.+++..+.+...
T Consensus 97 ~piylwd~n~eytq---------qLE~gg~~s~sll~wsKg~-~el~ig~~~gn~viynhgtsR~ii------------- 153 (615)
T KOG2247|consen 97 GPIYLWDVNSEYTQ---------QLESGGTSSKSLLAWSKGT-PELVIGNNAGNIVIYNHGTSRRII------------- 153 (615)
T ss_pred CCeeechhhhhhHH---------HHhccCcchHHHHhhccCC-ccccccccccceEEEeccchhhhh-------------
Confidence 99999999854322 1111 11111226788877 788888899999999988765421
Q ss_pred ccceeec-cccceeEEEEecCCCEEEE
Q 010256 333 TRSFFTE-IIASISDIKFARNGRHILS 358 (514)
Q Consensus 333 ~~~~~~~-~~~~i~~~~~s~~g~~l~~ 358 (514)
..| |...++++++.+.+..+..
T Consensus 154 ----v~Gkh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 154 ----VMGKHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred ----hhcccccceeEEEecccceeeec
Confidence 122 5567888999887766554
No 449
>PRK10115 protease 2; Provisional
Probab=84.18 E-value=56 Score=33.88 Aligned_cols=111 Identities=15% Similarity=0.175 Sum_probs=62.6
Q ss_pred CeEEEEECCCCCEEEEe-c-----CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC----
Q 010256 235 HINSISNNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---- 304 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---- 304 (514)
.+..+.++|++++|+.+ + ...|++.|+.++..... .+.+ .-..++|.+|+ ..|+....+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-------~i~~---~~~~~~w~~D~-~~~~y~~~~~~~~ 196 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-------LLDN---VEPSFVWANDS-WTFYYVRKHPVTL 196 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-------cccC---cceEEEEeeCC-CEEEEEEecCCCC
Confidence 45678899999999876 3 33588888875542211 1111 11569999998 444444332
Q ss_pred --CeEEEEEcCCCccccccccceeccCCCCccceeecccccee-EEEEecCCCEEEEE--e--CCeEEEEEcc
Q 010256 305 --GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS-DIKFARNGRHILSR--D--YMTLKLWDIN 370 (514)
Q Consensus 305 --g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~g~~l~~~--~--~~~i~iwd~~ 370 (514)
..|..+++.++.... ...++... .... .+..+.++++++.. + ++.+.+++..
T Consensus 197 ~~~~v~~h~lgt~~~~d--~lv~~e~~------------~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 197 LPYQVWRHTIGTPASQD--ELVYEEKD------------DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCCEEEEEECCCChhHC--eEEEeeCC------------CCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 356667776653211 22233221 1122 33344488877653 2 2688888864
No 450
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.61 E-value=3.9 Score=23.34 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=19.9
Q ss_pred cccceEEEEEcCCCCeEEEec-CC--CeEEEE
Q 010256 34 EVDIISAIEFDKSGDHLATGD-RG--GRVVLF 62 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~-~d--g~i~iw 62 (514)
....-.+..|||||++|+..+ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345677899999999888765 34 555555
No 451
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.38 E-value=30 Score=37.37 Aligned_cols=161 Identities=15% Similarity=0.169 Sum_probs=81.5
Q ss_pred EecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEE--------EecCCCcEEEEEecCCeEEEEEcCCCcccccc
Q 010256 250 SADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE--------FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 321 (514)
Q Consensus 250 s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~--------~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 321 (514)
..-|..+.+|+.++++... .+.+....|..+. |.|.=..+|+. +.--.|.++-+.-......
T Consensus 95 iTiDn~L~lWny~~~~e~~--------~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvv-aT~~ei~ilgV~~~~~~~~- 164 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELA--------EYDGLSHTILKVGLVKPKPGVFVPEIQHLLVV-ATPVEIVILGVSFDEFTGE- 164 (1311)
T ss_pred EEeCCeEEEEEcCCCCccc--------cccchhhhheeeeeecCCCCcchhhhheeEEe-cccceEEEEEEEeccccCc-
Confidence 3467889999999755442 2334444455443 22332123333 3344566655433222111
Q ss_pred ccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCC------C-ceeeeeecc---cccccccc
Q 010256 322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDS------G-PVATFQVHE---HLRPKLCD 391 (514)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~------~-~~~~~~~~~---~~~~~~~~ 391 (514)
...|... -.+......|.++....+|+.+++|.+| .+|.+.... + +-+.-.... ...+.+..
T Consensus 165 ~~~f~~~------~~i~~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~ 236 (1311)
T KOG1900|consen 165 LSIFNTS------FKISVDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLS 236 (1311)
T ss_pred ccccccc------eeeecCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhc
Confidence 0111100 0011112468899988899999999887 566553210 0 000000000 00111111
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
+. ....-.|..+.+....+.|.+-+..|.|.+|++..
T Consensus 237 ~~-~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 237 VP-GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CC-CCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11 00111234788887777888999999999999986
No 452
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.07 E-value=6.2 Score=22.77 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=22.0
Q ss_pred cCCCEEEEEe--CCeEEEEEccCCCCceeeeeec
Q 010256 351 RNGRHILSRD--YMTLKLWDINMDSGPVATFQVH 382 (514)
Q Consensus 351 ~~g~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~ 382 (514)
|+++.|+++. +++|.++|..+ .+.+..+...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEECC
Confidence 5677777653 38999999986 6666666553
No 453
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.14 E-value=13 Score=39.96 Aligned_cols=79 Identities=22% Similarity=0.346 Sum_probs=52.9
Q ss_pred ccCeEEEEECCCCCEEEEecCCeEEEEecc--CC-----Cceeeeec-------cCC--Cccc-ccCCceEEEEEecCCC
Q 010256 233 DYHINSISNNSDGETFISADDLRINLWNLE--IS-----NQSFNIVD-------VKP--ANME-DLTEVITSAEFHPTHC 295 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~--~~-----~~~~~~~~-------~~~--~~~~-~~~~~i~~v~~~p~~~ 295 (514)
...|+++....+|+.+.+|.|| .+|.+. .. +.+.++.- +-| ..+. .+.++|..++.....
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR- 254 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR- 254 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-
Confidence 3567888888899999999666 444432 11 11111100 001 1223 567799999998876
Q ss_pred cEEEEEecCCeEEEEEcCC
Q 010256 296 NMLAYSSSKGSIRLIDMRQ 314 (514)
Q Consensus 296 ~~l~~~~~dg~i~~wd~~~ 314 (514)
+++.+-+..|.|.+||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8999999999999999977
No 454
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=82.12 E-value=0.24 Score=46.13 Aligned_cols=144 Identities=10% Similarity=0.064 Sum_probs=89.9
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE-EeC-
Q 010256 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDY- 361 (514)
Q Consensus 284 ~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~- 361 (514)
......|-|.+. -++.++.+..+..||-...... . .. ..+....++|..++..++. +..
T Consensus 36 ~pi~~~w~~e~~-nlavaca~tiv~~YD~agq~~l-e------~n-----------~tg~aldm~wDkegdvlavlAek~ 96 (615)
T KOG2247|consen 36 GPIIHRWRPEGH-NLAVACANTIVIYYDKAGQVIL-E------LN-----------PTGKALDMAWDKEGDVLAVLAEKT 96 (615)
T ss_pred ccceeeEecCCC-ceehhhhhhHHHhhhhhcceec-c------cC-----------CchhHhhhhhccccchhhhhhhcC
Confidence 344566888874 4777888888888885432211 1 00 0134556778887777665 333
Q ss_pred CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCC
Q 010256 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK 441 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 441 (514)
+.+.+||+.+.....-...+.... . -..|++....++.+...|.+.|++..+.... ...-.|.
T Consensus 97 ~piylwd~n~eytqqLE~gg~~s~-s---------------ll~wsKg~~el~ig~~~gn~viynhgtsR~i-iv~Gkh~ 159 (615)
T KOG2247|consen 97 GPIYLWDVNSEYTQQLESGGTSSK-S---------------LLAWSKGTPELVIGNNAGNIVIYNHGTSRRI-IVMGKHQ 159 (615)
T ss_pred CCeeechhhhhhHHHHhccCcchH-H---------------HHhhccCCccccccccccceEEEeccchhhh-hhhcccc
Confidence 899999998622211111111110 0 2578888888999989999999998765332 2333388
Q ss_pred cceeEEEECCCCCceeecCCCCe
Q 010256 442 NPMRRQVQTPSRPSRPLGSLSGV 464 (514)
Q Consensus 442 ~~v~~~~~~~~~~~l~s~s~d~~ 464 (514)
.++.+.++.+.+..+ .++.|..
T Consensus 160 RRgtq~av~lEd~vi-l~dcd~~ 181 (615)
T KOG2247|consen 160 RRGTQIAVTLEDYVI-LCDCDNT 181 (615)
T ss_pred cceeEEEecccceee-ecCcHHH
Confidence 899999998876543 3344433
No 455
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=81.96 E-value=35 Score=29.96 Aligned_cols=114 Identities=15% Similarity=0.084 Sum_probs=67.1
Q ss_pred CceEEEEEecCCCcEEEEEecCC--eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe
Q 010256 283 EVITSAEFHPTHCNMLAYSSSKG--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360 (514)
Q Consensus 283 ~~i~~v~~~p~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 360 (514)
.....+.|..++ .++-+.+.-| .|+.+|+.+++... ..+.+. . -.--.++...|.-+.++=.
T Consensus 45 aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~----~~~l~~-----~------~FgEGit~~~d~l~qLTWk 108 (264)
T PF05096_consen 45 AFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQ----SVPLPP-----R------YFGEGITILGDKLYQLTWK 108 (264)
T ss_dssp -EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEE----EEE-TT-----T--------EEEEEEETTEEEEEESS
T ss_pred ccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEE----EEECCc-----c------ccceeEEEECCEEEEEEec
Confidence 345678887777 7878877766 69999999987531 111111 0 1122333433322333334
Q ss_pred CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCc
Q 010256 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (514)
Q Consensus 361 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 431 (514)
++...+||..+ -+.+.++....+. +.++ .|++.|+.......++++|.++.+
T Consensus 109 ~~~~f~yd~~t-l~~~~~~~y~~EG----------------WGLt--~dg~~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 109 EGTGFVYDPNT-LKKIGTFPYPGEG----------------WGLT--SDGKRLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp SSEEEEEETTT-TEEEEEEE-SSS------------------EEE--ECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred CCeEEEEcccc-ceEEEEEecCCcc----------------eEEE--cCCCEEEEECCccceEEECCcccc
Confidence 58999999987 7777777654322 1566 467777766677899999987653
No 456
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=81.21 E-value=31 Score=29.99 Aligned_cols=113 Identities=11% Similarity=0.095 Sum_probs=56.7
Q ss_pred eeEEEEecCCCEEEEEeC----CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC
Q 010256 344 ISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (514)
Q Consensus 344 i~~~~~s~~g~~l~~~~~----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 419 (514)
..+-.+-+||++|.+|++ ..+++++... ...-......... +. ...-+ -+...-|||+.|+.|+.+
T Consensus 69 CSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~-~~~~~~w~e~~~~---m~----~~RWY--pT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 69 CSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCT-SDGTCDWTESPND---MQ----SGRWY--PTATTLPDGRVLIVGGSN 138 (243)
T ss_pred ccCcCCCCCCCEEEeCCCCccccceEEEecCC-CCCCCCceECccc---cc----CCCcc--ccceECCCCCEEEEeCcC
Confidence 344456789999999753 5678877543 1111111110000 00 00000 145566899999988876
Q ss_pred C-cEEEEecCCCceeee---eecC----CCccee-EEEECCCCCceeecCCCCeEE
Q 010256 420 N-LFRVFGCSEGSAEST---TLEA----SKNPMR-RQVQTPSRPSRPLGSLSGVVR 466 (514)
Q Consensus 420 g-~i~iwd~~~~~~~~~---~~~~----~~~~v~-~~~~~~~~~~l~s~s~d~~v~ 466 (514)
. ...+|.......... .+.. .....+ .+...|+|++++.+..+..+.
T Consensus 139 ~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 139 NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 5 345555422111111 1111 111122 455679999998887655444
No 457
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=80.98 E-value=38 Score=29.73 Aligned_cols=187 Identities=13% Similarity=0.028 Sum_probs=99.6
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
..-..|...|||..-++-....|.-.|.++.+.. .+.+ ..+..........|.+.| ++-.++... .---.|..
T Consensus 104 a~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt--~f~l---p~~~a~~nlet~vfD~~G-~lWFt~q~G-~yGrLdPa 176 (353)
T COG4257 104 ASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVT--RFPL---PLEHADANLETAVFDPWG-NLWFTGQIG-AYGRLDPA 176 (353)
T ss_pred CCCceEEECCCCCeeEecCcceeEEecCcccceE--Eeec---ccccCCCcccceeeCCCc-cEEEeeccc-cceecCcc
Confidence 3445666777776555432224555555433221 1111 223335667788999999 777776532 11111211
Q ss_pred CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccc
Q 010256 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 392 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 392 (514)
.+. +++|..+.. ..-..++..|+|..-++.- +..|-..|... + .-..+...+.......
T Consensus 177 ~~~-----i~vfpaPqG-----------~gpyGi~atpdGsvwyaslagnaiaridp~~-~-~aev~p~P~~~~~gsR-- 236 (353)
T COG4257 177 RNV-----ISVFPAPQG-----------GGPYGICATPDGSVWYASLAGNAIARIDPFA-G-HAEVVPQPNALKAGSR-- 236 (353)
T ss_pred cCc-----eeeeccCCC-----------CCCcceEECCCCcEEEEeccccceEEccccc-C-CcceecCCCccccccc--
Confidence 111 233333221 3457788899999888742 24455555443 2 1122222111111000
Q ss_pred cccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCcee
Q 010256 393 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 457 (514)
Q Consensus 393 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 457 (514)
.+--+|.|+.-++-...+.++-||........-.|.+....-.++.....++.-.
T Consensus 237 ----------riwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~ 291 (353)
T COG4257 237 ----------RIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWL 291 (353)
T ss_pred ----------ccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEe
Confidence 4556678888888777788999998876666566666666666666655555443
No 458
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=80.85 E-value=66 Score=32.42 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=17.1
Q ss_pred cCCCCeEEEecCCC------eEEEEEecCCc
Q 010256 44 DKSGDHLATGDRGG------RVVLFERTDTR 68 (514)
Q Consensus 44 s~~g~~l~tg~~dg------~i~iw~~~~~~ 68 (514)
+..+.+++.|+.++ .+..||..++.
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~ 312 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNE 312 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCc
Confidence 44567788888773 57778876654
No 459
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.74 E-value=54 Score=31.72 Aligned_cols=83 Identities=11% Similarity=0.135 Sum_probs=48.6
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccC---------CCcee--eeeccCCCccc-ccCCceEEEEEecCC--CcEE
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEI---------SNQSF--NIVDVKPANME-DLTEVITSAEFHPTH--CNML 298 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~---------~~~~~--~~~~~~~~~~~-~~~~~i~~v~~~p~~--~~~l 298 (514)
-.|..+..++.|..++-+ .+|.+.++=.+. ++..+ +.+.+...-+. ...-.+..++|+|+. ...+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 356777788888777665 777666543221 11111 11111111111 112345678899986 4678
Q ss_pred EEEecCCeEEEEEcCCCc
Q 010256 299 AYSSSKGSIRLIDMRQSA 316 (514)
Q Consensus 299 ~~~~~dg~i~~wd~~~~~ 316 (514)
+.-+.|..||+||+....
T Consensus 184 ~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEEecCcEEEEEecCCcc
Confidence 888899999999997644
No 460
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=80.42 E-value=24 Score=27.11 Aligned_cols=70 Identities=14% Similarity=0.234 Sum_probs=46.1
Q ss_pred EEEecCCCcEEEEEecCCeEEEEEcCCCcccc----ccccceeccCCCCccceeeccccceeEEEEec-----CCCEEEE
Q 010256 288 AEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD----THSKLFEEQEAPGTRSFFTEIIASISDIKFAR-----NGRHILS 358 (514)
Q Consensus 288 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-----~g~~l~~ 358 (514)
-.|.... .-|+.++.-|+|.|++........ ..+..+.. ...|++++-.+ +...|+.
T Consensus 4 GkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-------------n~~italaaG~l~~~~~~D~Lli 69 (136)
T PF14781_consen 4 GKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-------------NQEITALAAGRLKPDDGRDCLLI 69 (136)
T ss_pred EEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEEC-------------CCceEEEEEEecCCCCCcCEEEE
Confidence 4566666 578888889999999876543211 11222222 24577776544 4568888
Q ss_pred EeCCeEEEEEccC
Q 010256 359 RDYMTLKLWDINM 371 (514)
Q Consensus 359 ~~~~~i~iwd~~~ 371 (514)
|+...+..||+..
T Consensus 70 Gt~t~llaYDV~~ 82 (136)
T PF14781_consen 70 GTQTSLLAYDVEN 82 (136)
T ss_pred eccceEEEEEccc
Confidence 9989999999986
No 461
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=80.21 E-value=86 Score=33.34 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=28.0
Q ss_pred cccceEEEEEcCCC------CeEEEecCCCeEEEEEecC
Q 010256 34 EVDIISAIEFDKSG------DHLATGDRGGRVVLFERTD 66 (514)
Q Consensus 34 h~~~V~~~~~s~~g------~~l~tg~~dg~i~iw~~~~ 66 (514)
-+..|.|+++.++. ++++.|+.|+.+++..+..
T Consensus 581 l~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p 619 (1205)
T KOG1898|consen 581 LSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDP 619 (1205)
T ss_pred eceeehhhccCCCCcchhhcceeeeeccccceeEEEecC
Confidence 35789999999865 5799999999999999873
No 462
>PHA03098 kelch-like protein; Provisional
Probab=80.00 E-value=68 Score=32.07 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=16.8
Q ss_pred CCCCEEEEEeCC--------CcEEEEecCCCcee
Q 010256 408 GDGGRVATGSYS--------NLFRVFGCSEGSAE 433 (514)
Q Consensus 408 ~~~~~l~s~~~d--------g~i~iwd~~~~~~~ 433 (514)
.++++++.|+.+ ..+.+||..+.+..
T Consensus 436 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 436 HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred ECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 356666666643 23889998877554
No 463
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=79.35 E-value=46 Score=32.07 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=24.9
Q ss_pred eeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
|.+++..+..+.|++.+.+|.|.+|++..+
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 558999998899999999999999999753
No 464
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=78.48 E-value=8.3 Score=21.91 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=18.7
Q ss_pred cCCceEEEEEecCCCcEEEEEecC--CeEEEE
Q 010256 281 LTEVITSAEFHPTHCNMLAYSSSK--GSIRLI 310 (514)
Q Consensus 281 ~~~~i~~v~~~p~~~~~l~~~~~d--g~i~~w 310 (514)
.........|+|||..++.++..+ |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345677889999994444455555 665555
No 465
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=78.36 E-value=64 Score=30.81 Aligned_cols=149 Identities=13% Similarity=0.130 Sum_probs=85.0
Q ss_pred cCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec-----CCCEEEEEeCCeEEE
Q 010256 292 PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-----NGRHILSRDYMTLKL 366 (514)
Q Consensus 292 p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-----~g~~l~~~~~~~i~i 366 (514)
+++...+++|+..|.++||+...+..... -..++. .-..+|..+..-+ +...||.-.-..+.|
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~lllE~-----------~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~v 101 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPE-DLLLET-----------QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSV 101 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCc-cEEEEE-----------ecCCcEEEEEeccccCCCCcceEEEecCCEEEE
Confidence 44447899999999999999855432110 011111 1225677776542 334566656688888
Q ss_pred EEccCCC-C-------ceeeeeeccccccccccccccCCccceeeEEEcC----C-CCEEEEEeCCCcEEEEecCCCcee
Q 010256 367 WDINMDS-G-------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG----D-GGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 367 wd~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----~-~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
|.+.... . .+..+..|.-.. ..+.++.-| . ..+|+.=+-||.+.+|+-+... .
T Consensus 102 Y~v~~~~g~~~~g~~~~L~~~yeh~l~~-------------~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~-f 167 (418)
T PF14727_consen 102 YSVSLVDGTVEHGNQYQLELIYEHSLQR-------------TAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA-F 167 (418)
T ss_pred EEEEecCCCcccCcEEEEEEEEEEeccc-------------ceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE-E
Confidence 8884311 1 122222222111 011344333 2 3578888999999999977431 1
Q ss_pred eeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 434 STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 434 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
...+.. .--...+.+.+.-..+++++.+..+.-
T Consensus 168 ~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~ 200 (418)
T PF14727_consen 168 SRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLEC 200 (418)
T ss_pred EEEcCC-CCCCcCeEEeecCCEEEEecCceeEEE
Confidence 233333 333345677777777888887777766
No 466
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=76.78 E-value=16 Score=36.70 Aligned_cols=31 Identities=13% Similarity=0.425 Sum_probs=25.6
Q ss_pred CCcEEEEeeCCCeEEEEEcCccEEEEEeecc
Q 010256 125 NSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (514)
Q Consensus 125 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~ 155 (514)
+..++++.+.|+++|+||+.++++.......
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 4468999999999999999999986665543
No 467
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=76.01 E-value=60 Score=29.25 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=25.8
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEEcCC
Q 010256 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (514)
Q Consensus 283 ~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~ 314 (514)
.....++++++| .++++--..+.|..|+..+
T Consensus 186 ~~s~g~~~D~~G-~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 186 SQSDGMAIDPNG-NLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp -SECEEEEETTT-EEEEEECCCTEEEEEETTT
T ss_pred CCCceEEECCCC-cEEEecCCCCeEEEEeCCC
Confidence 355678899988 8888888899999999876
No 468
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=75.83 E-value=80 Score=30.58 Aligned_cols=61 Identities=7% Similarity=0.011 Sum_probs=36.3
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 283 ~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
...+.|+|.|++ ++|++--..|.|++++..++... .+..+... ......+....|+++|+-
T Consensus 30 ~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~--~~~~l~~v-------~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDN-QLWVTERATGKILRVNPETGEVK--VVFTLPEI-------VNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCcee--eeecCCce-------eccCCCCceeeEEECCCc
Confidence 456899999998 67765544699999986554311 01111100 000013578899999874
No 469
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=75.26 E-value=7.8 Score=20.14 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=20.8
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEE
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFE 63 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~ 63 (514)
..|.+++.++ .+++.+...+.+|||.
T Consensus 2 E~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC--CEEEEEeCCCeEEecC
Confidence 4588888874 4899988889999984
No 470
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=75.24 E-value=13 Score=37.32 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=25.2
Q ss_pred CceEEEEEec----CCCcEEEEEecCCeEEEEEcCCCcc
Q 010256 283 EVITSAEFHP----THCNMLAYSSSKGSIRLIDMRQSAL 317 (514)
Q Consensus 283 ~~i~~v~~~p----~~~~~l~~~~~dg~i~~wd~~~~~~ 317 (514)
..+.++++++ +. .++++.+.|+++|+||+.++.+
T Consensus 215 ~~~~~~~~~~~~~~~~-~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 215 SVAASLAVSSSEINDD-TFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp --EEEEEE-----ETT-TEEEEEETTSEEEEEETTTTCE
T ss_pred CccceEEEecceeCCC-CEEEEEeCCCeEEEEECCCCeE
Confidence 3455666665 44 7999999999999999999887
No 471
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=74.17 E-value=78 Score=29.70 Aligned_cols=113 Identities=12% Similarity=0.107 Sum_probs=65.1
Q ss_pred ccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce-eeeeccCC
Q 010256 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS-FNIVDVKP 275 (514)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~-~~~~~~~~ 275 (514)
.+....+|.+..|.+..........+..+.|.. .+.+..+........|..+ ++.-|.-|+.+-.... ..++..-
T Consensus 174 a~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~--~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~- 250 (381)
T PF02333_consen 174 AFVNGKDGRVEQYELTDDGDGKVSATLVREFKV--GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASA- 250 (381)
T ss_dssp EEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEB-
T ss_pred EEEecCCceEEEEEEEeCCCCcEeeEEEEEecC--CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecc-
Confidence 366777899999984334444444555565522 3468888888888889889 8888888887633211 1222110
Q ss_pred CcccccCCceEEEEEe--cCCCcEEE-EEecCCeEEEEEcCC
Q 010256 276 ANMEDLTEVITSAEFH--PTHCNMLA-YSSSKGSIRLIDMRQ 314 (514)
Q Consensus 276 ~~~~~~~~~i~~v~~~--p~~~~~l~-~~~~dg~i~~wd~~~ 314 (514)
.-......|-.++.- +++..+|+ +.-.+++..+|+.+.
T Consensus 251 -~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 251 -DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp -SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred -cccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 011234567777764 33323444 444478899999765
No 472
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=73.36 E-value=11 Score=19.62 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCeEEEecCCCeEEEE
Q 010256 38 ISAIEFDKSGDHLATGDRGGRVVLF 62 (514)
Q Consensus 38 V~~~~~s~~g~~l~tg~~dg~i~iw 62 (514)
...++++++|+++++=+.+..|+++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4678888888888777777777764
No 473
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=73.12 E-value=56 Score=27.60 Aligned_cols=76 Identities=11% Similarity=0.125 Sum_probs=41.9
Q ss_pred ccCeEEEEECCCCCEEEEecCCeEEEEeccCCCc---eeeeeccCCCcccccC-CceEEEEEecCCCcEEEEEecCCeEE
Q 010256 233 DYHINSISNNSDGETFISADDLRINLWNLEISNQ---SFNIVDVKPANMEDLT-EVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~-~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
...+.+++-.|-.--|+.|.++.+.+|.+..... ...++++...-+.-+. -.+..+++.. .++|..+ +-.++
T Consensus 134 ~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic~---~yiA~~s-~~ev~ 209 (215)
T PF14761_consen 134 SEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAICE---GYIAVMS-DLEVL 209 (215)
T ss_pred CCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecCceEEEEEEEe---eEEEEec-CCEEE
Confidence 3567788888876666677778899998763322 1133333322222222 2245566643 4566544 44666
Q ss_pred EEEc
Q 010256 309 LIDM 312 (514)
Q Consensus 309 ~wd~ 312 (514)
++.+
T Consensus 210 Vlkl 213 (215)
T PF14761_consen 210 VLKL 213 (215)
T ss_pred EEEE
Confidence 6554
No 474
>PRK13615 lipoprotein LpqB; Provisional
Probab=72.88 E-value=1.1e+02 Score=30.69 Aligned_cols=138 Identities=9% Similarity=0.017 Sum_probs=75.9
Q ss_pred eEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEE
Q 010256 345 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (514)
.+++.+++++.++.-+. +.+.++... +.....+.+.. .+.-.|.++| .+-+...+...+
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~--~~~~~~~~~~~-----------------Lt~PS~d~~g-~vWtv~~g~~~~ 396 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGD--RDAVLLDTRPG-----------------LVAPSLDAQG-YVWSTPASDPRG 396 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCC--CcceeeccCCc-----------------cccCcCcCCC-CEEEEeCCCceE
Confidence 77899999999887653 777777654 22222222221 1145677776 444444333344
Q ss_pred EEecCC-CceeeeeecCC-CcceeEEEECCCCCceeecCC---CCeEEE----eeCCCCCcccc-CC--cccccccceEE
Q 010256 424 VFGCSE-GSAESTTLEAS-KNPMRRQVQTPSRPSRPLGSL---SGVVRR----VKGADNSALDA-NG--NAFDFSMKLLH 491 (514)
Q Consensus 424 iwd~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~s~---d~~v~i----~~~~~~~~~~~-~~--~~~~~~~~v~~ 491 (514)
+..... +.......... ...|..+..|+||--++.... .+.|.+ ..+..+. .+ .. ....-...+.+
T Consensus 397 l~~~~~~G~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~--~L~~~p~~l~~~l~~v~s 474 (557)
T PRK13615 397 LVAWGPDGVGHPVAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPT--SLTTTPLELLASPGTPLD 474 (557)
T ss_pred EEEecCCCceEEeeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcce--EeeeccEEcccCcCccee
Confidence 444332 22211112222 257999999999987665432 456777 3223221 12 11 11112348899
Q ss_pred EEEcCCCCEEEEE
Q 010256 492 LAWHPSENSIACA 504 (514)
Q Consensus 492 ~~~spd~~~l~~~ 504 (514)
++|..++++.+.+
T Consensus 475 l~W~~~~~laVl~ 487 (557)
T PRK13615 475 ATWVDELDVATLT 487 (557)
T ss_pred eEEcCCCEEEEEe
Confidence 9999999987755
No 475
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=72.59 E-value=80 Score=32.07 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=26.1
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCC
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~ 264 (514)
..+.++.-+|.++-++++ .||+|++|+....
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeeccc
Confidence 446788889999999999 9999999998633
No 476
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=72.24 E-value=2.6 Score=42.84 Aligned_cols=107 Identities=14% Similarity=0.221 Sum_probs=57.5
Q ss_pred ccccccccchhhccccCcccc----cccc---cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCccccccccccc
Q 010256 11 AAQPLEWKFSQVFGERTAGEE----VQEV---DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYS 83 (514)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~----~~h~---~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 83 (514)
.++..+|+..+.-|+-...-. .+.. ..|.-+-|-++..++..+..++.|++-+..+...
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-------------- 217 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-------------- 217 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH--------------
Confidence 356778888775444322111 1122 3333344445778888888899888877654321
Q ss_pred ccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcC
Q 010256 84 MSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQ 144 (514)
Q Consensus 84 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~ 144 (514)
..+.+|......+. .+...+.-++= -++||+.++.++.||.+++|.+.
T Consensus 218 ----------~l~rsHs~~~~d~a--~~~~g~~~l~~-lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 218 ----------SLFRSHSQRVTDMA--FFAEGVLKLAS-LSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ----------HHHHhcCCCcccHH--HHhhchhhhee-eCCCCcEEEEeecCCccceeeee
Confidence 12344541000000 00011222221 17888899999999999999764
No 477
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.91 E-value=1.2e+02 Score=30.95 Aligned_cols=174 Identities=11% Similarity=0.115 Sum_probs=85.3
Q ss_pred CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCc
Q 010256 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (514)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 333 (514)
-.|+||+.. +.... ++......+..+.|+.+. .|++-..+|++++|++..... .....-++.
T Consensus 64 ~~I~If~~s-G~lL~--------~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~ge~i-e~~svg~e~------ 125 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLG--------RILWKHGELIGMGWSDDE--ELICVQKDGTVHVYGLLGEFI-ESNSVGFES------ 125 (829)
T ss_pred eeEEEEecc-ccchH--------HHHhcCCCeeeecccCCc--eEEEEeccceEEEeecchhhh-ccccccccc------
Confidence 347777775 33322 122234478899999886 567788999999999865332 110011111
Q ss_pred cceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccc-cccccccccccCCccceeeE-EEcCCCC
Q 010256 334 RSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEH-LRPKLCDLYENDSIFDKFEC-CLSGDGG 411 (514)
Q Consensus 334 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~-~~s~~~~ 411 (514)
....|..+.|..+|-.+.+.++.-+.+-+... ..+..++.-.. ..... +- ++.|...
T Consensus 126 ------~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~--~~~~~~~diP~~~~~~~-------------~Wt~~~~~~~ 184 (829)
T KOG2280|consen 126 ------QMSDIVECRFFHNGVAVLTVSGQVILINGVEE--PKLRKMPDIPYNELPKS-------------CWTVFQPHRQ 184 (829)
T ss_pred ------ccCceeEEEEecCceEEEecCCcEEEEcCCCc--chhhhCCCCCCccCCCc-------------ceeEecCCCc
Confidence 11345556665566555555443444444332 11111111000 00000 11 1122111
Q ss_pred --EEEEEe-CCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 412 --RVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 412 --~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.|+-.. ..+ ..++-..........+....+.+..+..||+.++|+.-.++|.+.+
T Consensus 185 ~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~ 242 (829)
T KOG2280|consen 185 STILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWV 242 (829)
T ss_pred ceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEE
Confidence 111111 111 1222232221112233333456778999999999999999999988
No 478
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=71.87 E-value=89 Score=29.34 Aligned_cols=152 Identities=13% Similarity=0.116 Sum_probs=76.2
Q ss_pred CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEe--c-CCCcEEEEEecCCeEEEEEcCC---Cccccccccceec
Q 010256 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--P-THCNMLAYSSSKGSIRLIDMRQ---SALCDTHSKLFEE 327 (514)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~--p-~~~~~l~~~~~dg~i~~wd~~~---~~~~~~~~~~~~~ 327 (514)
.+|++|.+......+..+.-....+......++.+++. | +|..+.+....+|.+..|.+.. +....+.++.|..
T Consensus 127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 46888877632222221110000111122447777763 3 3434566677889888887752 3333334555554
Q ss_pred cCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeee-e--ccccccccccccccCCccceee
Q 010256 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQ-V--HEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
. +.+..|........|+.+.. .-|.-|+.+........+. . ..... .++-.
T Consensus 207 ~-------------sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~------------aDvEG 261 (381)
T PF02333_consen 207 G-------------SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLV------------ADVEG 261 (381)
T ss_dssp S-------------S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-------------S-EEE
T ss_pred C-------------CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccc------------cCccc
Confidence 3 36888888888888888876 5566666653221111111 1 11111 12335
Q ss_pred EEE--cCCCC-EE-EEEeCCCcEEEEecCCC
Q 010256 404 CCL--SGDGG-RV-ATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 404 ~~~--s~~~~-~l-~s~~~dg~i~iwd~~~~ 430 (514)
+++ .++++ || ++.-.+++..||+.+..
T Consensus 262 laly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 262 LALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred eEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 554 33443 44 45556789999998753
No 479
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=71.84 E-value=73 Score=28.38 Aligned_cols=143 Identities=10% Similarity=0.058 Sum_probs=84.1
Q ss_pred CCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-
Q 010256 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD- 360 (514)
Q Consensus 282 ~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~- 360 (514)
.+.+..+.++. ++...+..+.-+++.|+.+...... .-.++. .+.-.++..+ |++...++
T Consensus 86 ~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~-~~~lnt-------------~gyaygv~vs--Gn~aYVadl 146 (370)
T COG5276 86 RDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTL-IGFLNT-------------DGYAYGVYVS--GNYAYVADL 146 (370)
T ss_pred hhhhheeEecc---cEEEEEcCCCceEEEeccCCCCcce-eccccC-------------CceEEEEEec--CCEEEEeec
Confidence 34456677764 4667777888899999987553211 001110 0233444444 77888776
Q ss_pred CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC
Q 010256 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 440 (514)
Q Consensus 361 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 440 (514)
+.-+.+.|+..+..+...-....... +-..++.| |++-..+..|+-+.|-|+...... ++.+|
T Consensus 147 ddgfLivdvsdpssP~lagrya~~~~-------------d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sP--vli~~ 209 (370)
T COG5276 147 DDGFLIVDVSDPSSPQLAGRYALPGG-------------DTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSP--VLIGS 209 (370)
T ss_pred cCcEEEEECCCCCCceeeeeeccCCC-------------CceeEEEe--cCeEEEEEeCCCeEEEEccCCCCC--eEEEE
Confidence 45677889887655543222111100 01145555 667777778999999999865443 33333
Q ss_pred --Cc-ceeEEEECCCCCceeecC
Q 010256 441 --KN-PMRRQVQTPSRPSRPLGS 460 (514)
Q Consensus 441 --~~-~v~~~~~~~~~~~l~s~s 460 (514)
.+ .++.+..+++.-+++...
T Consensus 210 ~n~g~g~~sv~vsdnr~y~vvy~ 232 (370)
T COG5276 210 YNTGPGTYSVSVSDNRAYLVVYD 232 (370)
T ss_pred EecCCceEEEEecCCeeEEEEcc
Confidence 33 567777788777666553
No 480
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=71.46 E-value=75 Score=28.33 Aligned_cols=144 Identities=10% Similarity=0.092 Sum_probs=81.6
Q ss_pred ceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCc
Q 010256 343 SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 421 (514)
-+..+.++ +++...+++ .-++|.|+.++.++...-.... +.+ .-.|.-.|++...+..|.-
T Consensus 88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt------------~gy----aygv~vsGn~aYVadlddg 149 (370)
T COG5276 88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT------------DGY----AYGVYVSGNYAYVADLDDG 149 (370)
T ss_pred hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccC------------Cce----EEEEEecCCEEEEeeccCc
Confidence 46667777 446666554 7799999998655543322221 100 3345556889888887777
Q ss_pred EEEEecCCCceee--eeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCC
Q 010256 422 FRVFGCSEGSAES--TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 499 (514)
Q Consensus 422 i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~ 499 (514)
+-+.|+.+.+... ..+......-..++.| |++-..+..|+.+.+++-..+....+.+ ..+....+.++.-+++--
T Consensus 150 fLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~-~~n~g~g~~sv~vsdnr~ 226 (370)
T COG5276 150 FLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIG-SYNTGPGTYSVSVSDNRA 226 (370)
T ss_pred EEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEE-EEecCCceEEEEecCCee
Confidence 8899998754432 2222223333455555 4454555577777774444333211211 112344677887777777
Q ss_pred EEEEEecC
Q 010256 500 SIACAASN 507 (514)
Q Consensus 500 ~l~~~~~~ 507 (514)
+++...+.
T Consensus 227 y~vvy~eg 234 (370)
T COG5276 227 YLVVYDEG 234 (370)
T ss_pred EEEEcccc
Confidence 76655443
No 481
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=68.97 E-value=2.1e+02 Score=32.55 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=50.1
Q ss_pred cCeEEEEECCCCCE-EEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 234 YHINSISNNSDGET-FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 234 ~~v~~~~~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
..+.+...+++++. +.++ +...+.+|++....-...-.-.....+.+......+|.++++ .|+++..+|.++.=+
T Consensus 438 ~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d---rLFvADseGkLYsa~ 514 (1774)
T PF11725_consen 438 DKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND---RLFVADSEGKLYSAD 514 (1774)
T ss_pred hhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC---eEEEEeCCCCEEecc
Confidence 45667778899988 6677 677779999875421110000000133444457788888876 466688899888877
Q ss_pred cCCCc
Q 010256 312 MRQSA 316 (514)
Q Consensus 312 ~~~~~ 316 (514)
+....
T Consensus 515 l~~~~ 519 (1774)
T PF11725_consen 515 LPAAQ 519 (1774)
T ss_pred ccccc
Confidence 76543
No 482
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.99 E-value=89 Score=33.93 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=28.3
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTR 68 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~ 68 (514)
......++|+|...++|.|...|.|.+|-...-+
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccceE
Confidence 3456789999999999999999999999865444
No 483
>PHA03098 kelch-like protein; Provisional
Probab=66.15 E-value=1.5e+02 Score=29.70 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=16.9
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCce
Q 010256 409 DGGRVATGSYS-----NLFRVFGCSEGSA 432 (514)
Q Consensus 409 ~~~~l~s~~~d-----g~i~iwd~~~~~~ 432 (514)
++++++.|+.+ +.+.+||..+...
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 67777777654 4688888887654
No 484
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=65.76 E-value=92 Score=27.17 Aligned_cols=124 Identities=14% Similarity=0.132 Sum_probs=61.1
Q ss_pred EEEEEecCCCcEEEEEec-C--CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-
Q 010256 286 TSAEFHPTHCNMLAYSSS-K--GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY- 361 (514)
Q Consensus 286 ~~v~~~p~~~~~l~~~~~-d--g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~- 361 (514)
.+-.+.|+| +++.+|+. + ..+++++...... ...+..... .+ ....+-.++..-|||+.|+.|+.
T Consensus 70 Sgg~~L~dG-~ll~tGG~~~G~~~ir~~~p~~~~~----~~~w~e~~~-----~m-~~~RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 70 SGGAFLPDG-RLLQTGGDNDGNKAIRIFTPCTSDG----TCDWTESPN-----DM-QSGRWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred cCcCCCCCC-CEEEeCCCCccccceEEEecCCCCC----CCCceECcc-----cc-cCCCccccceECCCCCEEEEeCcC
Confidence 334577898 88888876 3 3577777654100 001110000 00 01123344555679999998754
Q ss_pred -CeEEEEEccCCCCceeeeeeccccc-cccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 362 -MTLKLWDINMDSGPVATFQVHEHLR-PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 362 -~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
.+..+|.-.........+....... .....+|. -+...|||++++.+..+. .|||..+.
T Consensus 139 ~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP--------~~~llPdG~lFi~an~~s--~i~d~~~n 199 (243)
T PF07250_consen 139 NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYP--------FVHLLPDGNLFIFANRGS--IIYDYKTN 199 (243)
T ss_pred CCcccccCCccCCCCceeeecchhhhccCccccCc--------eEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence 4556665432111111111111000 00111111 466789999998887654 46687765
No 485
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=65.58 E-value=97 Score=27.38 Aligned_cols=238 Identities=10% Similarity=0.004 Sum_probs=120.7
Q ss_pred eCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCC
Q 010256 122 QSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPP 201 (514)
Q Consensus 122 ~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 201 (514)
|.++|..-+++...+.|--.|..+|+.....-... +++..+..-|||..- ++-
T Consensus 69 papdG~VWft~qg~gaiGhLdP~tGev~~ypLg~G---------------a~Phgiv~gpdg~~W------------itd 121 (353)
T COG4257 69 PAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSG---------------ASPHGIVVGPDGSAW------------ITD 121 (353)
T ss_pred cCCCCceEEecCccccceecCCCCCceEEEecCCC---------------CCCceEEECCCCCee------------Eec
Confidence 46788788888888888888888887554332221 222255666666654 322
Q ss_pred CCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCccccc
Q 010256 202 GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDL 281 (514)
Q Consensus 202 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 281 (514)
+.. .|.-.+ -.+.+. +....-...-........|.+.|++-.++..|.---.|.. ...++++.. ..
T Consensus 122 ~~~-aI~R~d-pkt~ev----t~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa--~~~i~vfpa------Pq 187 (353)
T COG4257 122 TGL-AIGRLD-PKTLEV----TRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPA--RNVISVFPA------PQ 187 (353)
T ss_pred Ccc-eeEEec-Ccccce----EEeecccccCCCcccceeeCCCccEEEeeccccceecCcc--cCceeeecc------CC
Confidence 222 222111 001110 0000001223456677889999998888743322112222 111222110 02
Q ss_pred CCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC
Q 010256 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 361 (514)
Q Consensus 282 ~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 361 (514)
....+.|+..|+| .+.++.-.+..|-..|..++. ...+..++. ....-..+--+|.|+.-++-..
T Consensus 188 G~gpyGi~atpdG-svwyaslagnaiaridp~~~~-----aev~p~P~~---------~~~gsRriwsdpig~~wittwg 252 (353)
T COG4257 188 GGGPYGICATPDG-SVWYASLAGNAIARIDPFAGH-----AEVVPQPNA---------LKAGSRRIWSDPIGRAWITTWG 252 (353)
T ss_pred CCCCcceEECCCC-cEEEEeccccceEEcccccCC-----cceecCCCc---------ccccccccccCccCcEEEeccC
Confidence 3445788899999 666666667777777776653 222222211 0123444556677887777443
Q ss_pred -CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 362 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 362 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
+.+..||-....-....+.+..... .++.....++.-.+--..|.|.-+|.++.
T Consensus 253 ~g~l~rfdPs~~sW~eypLPgs~arp---------------ys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 253 TGSLHRFDPSVTSWIEYPLPGSKARP---------------YSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred CceeeEeCcccccceeeeCCCCCCCc---------------ceeeeccCCcEEeeccccCceeecCcccc
Confidence 7777777664221122222222111 14555555555444444566777776644
No 486
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=64.39 E-value=50 Score=34.56 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=39.2
Q ss_pred eeeEEEcCCCCEEEE-EeCCC-----cEEEEecCCCceeeeeecCCCcceeEEEECCCCC
Q 010256 401 KFECCLSGDGGRVAT-GSYSN-----LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 454 (514)
Q Consensus 401 v~~~~~s~~~~~l~s-~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 454 (514)
+++-+|||||+.|+- .+.++ .|++-++.+.......|......|.......+|-
T Consensus 352 i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~gd 411 (912)
T TIGR02171 352 VYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLENGD 411 (912)
T ss_pred eecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCCCC
Confidence 347899999999997 45444 5899999876555566766677777777776654
No 487
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=64.02 E-value=2e+02 Score=30.38 Aligned_cols=32 Identities=6% Similarity=-0.248 Sum_probs=25.4
Q ss_pred eeeEEEcCCCCEEEEEeCCCcEEEEecCCCce
Q 010256 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 432 (514)
|.+++...-+.+++..-.||+|.++|..+-+.
T Consensus 262 V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~ 293 (753)
T PF11635_consen 262 VVSITSPELDIVVAFAFSDGSIEFRDRNTMKE 293 (753)
T ss_pred EEEEEecccCcEEEEEEcCCeEEEEecCcchh
Confidence 44666666778899999999999999887643
No 488
>PRK13613 lipoprotein LpqB; Provisional
Probab=63.78 E-value=1.7e+02 Score=29.66 Aligned_cols=153 Identities=5% Similarity=0.001 Sum_probs=0.0
Q ss_pred ceeEEEEecCCCEEEEEeC--CeEEEEEccCCCC----ceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE
Q 010256 343 SISDIKFARNGRHILSRDY--MTLKLWDINMDSG----PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 416 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 416 (514)
.+.+.+.++++..++.-.. ..+.+..+..... ....+.+..-. .-.|.++| .+-+.
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt-----------------~PS~d~~g-~vWtv 425 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLT-----------------SPSWDGRG-DLWVV 425 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCccc-----------------CCcCcCCC-CEEEe
Q ss_pred eC----CCcEEEEecCCCceeeeeecCCCc-ceeEEEECCCCCceeecCC---CCeEEE----eeCCCCCccccCCcccc
Q 010256 417 SY----SNLFRVFGCSEGSAESTTLEASKN-PMRRQVQTPSRPSRPLGSL---SGVVRR----VKGADNSALDANGNAFD 484 (514)
Q Consensus 417 ~~----dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~s~---d~~v~i----~~~~~~~~~~~~~~~~~ 484 (514)
.. ...+++..- ++...........+ .|..+..++||--+|.... .+.|.+ .+........-......
T Consensus 426 d~~~~~~~vl~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~ 504 (599)
T PRK13613 426 DRDPADPRLLWLLQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAP 504 (599)
T ss_pred cCCCCCceEEEEEcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEecc
Q ss_pred cccceEEEEEcCCCCEEEEEecCc--EEEEeC
Q 010256 485 FSMKLLHLAWHPSENSIACAASNS--LYMYYA 514 (514)
Q Consensus 485 ~~~~v~~~~~spd~~~l~~~~~~~--~~i~~~ 514 (514)
-...+.+++|..++.+++.+.... ..+|..
T Consensus 505 ~l~~v~~~~W~~~~sL~Vlg~~~~~~~~v~~v 536 (599)
T PRK13613 505 ELEDVTDMSWAGDSQLVVLGREEGGVQQARYV 536 (599)
T ss_pred CCCccceeEEcCCCEEEEEeccCCCCcceEEE
No 489
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=62.91 E-value=99 Score=31.80 Aligned_cols=30 Identities=13% Similarity=0.235 Sum_probs=24.4
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEe
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFER 64 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~ 64 (514)
.+.|-+.+||.|.+.++....+..|.+++-
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 567888999999997777777778888873
No 490
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=62.35 E-value=95 Score=26.16 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=35.9
Q ss_pred CCCEEEE-e--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccc
Q 010256 244 DGETFIS-A--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 318 (514)
Q Consensus 244 ~~~~l~s-~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~ 318 (514)
+|.++.+ | ....|+.||+.+++..... .+.|.+. ....++.+ +..+.+..-.+|.-..+|.++-+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~-~l~~~~~--FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~l 124 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSE-KLAPDTV--FGEGITKL-----GDYFYQLTWKEGVAFKYDADTLEEL 124 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEe-ecCCccc--cccceeec-----cceEEEEEeccceeEEEChHHhhhh
Confidence 3455555 4 4778999999977655432 1111011 11222221 2134444556778888888876653
No 491
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=61.97 E-value=1.2e+02 Score=27.30 Aligned_cols=221 Identities=12% Similarity=0.114 Sum_probs=105.9
Q ss_pred ceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccc-----cCccCeEEEEECCCCC----
Q 010256 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAH-----AHDYHINSISNNSDGE---- 246 (514)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~---- 246 (514)
.++++|.+... ++....+...+|| .......-....+..... ......+.+.|+....
T Consensus 27 Gia~~p~~~~W------------VadngT~~~TlYd-g~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt 93 (336)
T TIGR03118 27 GLSYRPGGPFW------------VANTGTGTATLYV-GNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVS 93 (336)
T ss_pred eeEecCCCCEE------------EecCCcceEEeec-CCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEc
Confidence 67788877665 6666677777777 220000000111111111 0123456666664322
Q ss_pred --------EEEEe-cCCeEEEEeccCCCc----eeeeeccCCCcccccCCce-EEEEEecC--CCcEEEEE-ecCCeEEE
Q 010256 247 --------TFISA-DDLRINLWNLEISNQ----SFNIVDVKPANMEDLTEVI-TSAEFHPT--HCNMLAYS-SSKGSIRL 309 (514)
Q Consensus 247 --------~l~s~-~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~i-~~v~~~p~--~~~~l~~~-~~dg~i~~ 309 (514)
.++.+ +||+|.-|....... ....++ ......| ..+++... + .+|+.+ -..++|.+
T Consensus 94 ~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d------~s~~gavYkGLAi~~~~~~-~~LYaadF~~g~IDV 166 (336)
T TIGR03118 94 GEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVD------ASQQGNVYKGLAVGPTGGG-DYLYAANFRQGRIDV 166 (336)
T ss_pred CCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEc------cCCCcceeeeeEEeecCCC-ceEEEeccCCCceEE
Confidence 23444 899999998542221 111111 0112233 24454432 4 444444 34789999
Q ss_pred EEcCCCccccccccceeccCCCCcccee--ecc--ccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccc
Q 010256 310 IDMRQSALCDTHSKLFEEQEAPGTRSFF--TEI--IASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH 384 (514)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~ 384 (514)
||-.-.+... .-.|..+..|....-+ ... .-.|+-..-.++++.=+.|.. |.|.+||.. ++.++++.....
T Consensus 167 Fd~~f~~~~~--~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~--G~l~~r~as~g~ 242 (336)
T TIGR03118 167 FKGSFRPPPL--PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN--GQLLRRVASSGR 242 (336)
T ss_pred ecCccccccC--CCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC--CcEEEEeccCCc
Confidence 9865433210 1112222211110000 000 001121222233333333433 799999997 788887744332
Q ss_pred cccccccccccCCccceeeEEEcC------CCCEEEEEeCCCcEEEEecCCCcee
Q 010256 385 LRPKLCDLYENDSIFDKFECCLSG------DGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
.. .-+.++..| .|.+|+---.||+|..||..+++..
T Consensus 243 LN-------------aPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 243 LN-------------APWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred cc-------------CCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence 21 112555544 4667776567999999999988544
No 492
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=61.88 E-value=1.2e+02 Score=27.29 Aligned_cols=216 Identities=9% Similarity=0.063 Sum_probs=111.4
Q ss_pred CeEEEEECCCCCEEEEe-cCCeEEEEeccC------CCceeeeeccCCCcccccCCceEEEEEecCC-----------Cc
Q 010256 235 HINSISNNSDGETFISA-DDLRINLWNLEI------SNQSFNIVDVKPANMEDLTEVITSAEFHPTH-----------CN 296 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~-----------~~ 296 (514)
.-+.|+++|.+.+-++. ..+...+||... .+.+... +....-.......+.+.|+... ..
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vt--iP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVV--IPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEE--ecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 45789999999888887 789999999861 1121111 1110111123457778777432 12
Q ss_pred EEEEEecCCeEEEEEcCCCcccc-ccccceeccCCCCccceeeccccceeEEEEec--CCCEEEEEeC--CeEEEEEccC
Q 010256 297 MLAYSSSKGSIRLIDMRQSALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFAR--NGRHILSRDY--MTLKLWDINM 371 (514)
Q Consensus 297 ~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~~~~--~~i~iwd~~~ 371 (514)
.++.+++||+|.-|...-+.... .....++... ...--..+++.. .+.+|+.++- ++|.|||-.-
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~----------~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQ----------QGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCC----------CcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 46778899999999854332100 0011111110 011233455553 4678888753 9999998764
Q ss_pred CCCceeeeeeccccccccccccccCCcc---ceeeEEE---cCCCCEEEEEeCCCcEEEEecCCCceeeeee--cCCCcc
Q 010256 372 DSGPVATFQVHEHLRPKLCDLYENDSIF---DKFECCL---SGDGGRVATGSYSNLFRVFGCSEGSAESTTL--EASKNP 443 (514)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~---s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~ 443 (514)
. ++.. .+ .-.-+.+..-|..-.|. ...-+.| .+++..=+.|..-|.|-+||+.- .+.+.+ .+.-..
T Consensus 172 -~-~~~~-~g-~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G--~l~~r~as~g~LNa 245 (336)
T TIGR03118 172 -R-PPPL-PG-SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG--QLLRRVASSGRLNA 245 (336)
T ss_pred -c-cccC-CC-CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC--cEEEEeccCCcccC
Confidence 2 2111 00 00000011111000000 0001111 22222223344457899999873 333333 345566
Q ss_pred eeEEEECC------CCCceeecCCCCeEEEe
Q 010256 444 MRRQVQTP------SRPSRPLGSLSGVVRRV 468 (514)
Q Consensus 444 v~~~~~~~------~~~~l~s~s~d~~v~i~ 468 (514)
.+.++..| .+.+|+---.||+|...
T Consensus 246 PWG~a~APa~FG~~sg~lLVGNFGDG~InaF 276 (336)
T TIGR03118 246 PWGLAIAPESFGSLSGALLVGNFGDGTINAY 276 (336)
T ss_pred CceeeeChhhhCCCCCCeEEeecCCceeEEe
Confidence 77787754 56777777789999983
No 493
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=61.71 E-value=23 Score=25.03 Aligned_cols=44 Identities=7% Similarity=0.111 Sum_probs=27.1
Q ss_pred EecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC
Q 010256 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 361 (514)
Q Consensus 301 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 361 (514)
+..+|++.-||..+++.. . +...-...+.|++++|+.+++.+.-
T Consensus 33 ~~~~GRll~ydp~t~~~~-----v------------l~~~L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETT-----V------------LLDGLYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp T---EEEEEEETTTTEEE-----E------------EEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred CCCCcCEEEEECCCCeEE-----E------------ehhCCCccCeEEEcCCCCEEEEEec
Confidence 344677888888887631 1 1111235788999999999888754
No 494
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=60.15 E-value=29 Score=24.38 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=0.0
Q ss_pred CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe-CCCcEEEEecCC
Q 010256 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSE 429 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~ 429 (514)
+.|..||..........+.... .+.++|++++|..++ ..+.|++|+...
T Consensus 36 ~~Vvyyd~~~~~~va~g~~~aN-------------------GI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 36 GNVVYYDGKEVKVVASGFSFAN-------------------GIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEEeCCEeEEeeccCCCCc-------------------eEEEcCCCCEEEEEeccCCeEEEEEecC
No 495
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=58.98 E-value=3.3e+02 Score=31.24 Aligned_cols=63 Identities=10% Similarity=0.064 Sum_probs=42.5
Q ss_pred eeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 402 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 402 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
..++.-.+ +.+++....|.+.... +.+........+-...|..++.....++.|.-+ +|.+..
T Consensus 706 ~a~Avv~~-~~fvald~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~-~G~Lf~ 768 (1774)
T PF11725_consen 706 TAFAVVND-NKFVALDDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQNLYALTS-TGELFR 768 (1774)
T ss_pred eeEEEEcC-CceEEeccCCcccccc-CCCCCccCCCCCCCcchhheeeccccceeEecC-CCceee
Confidence 36666544 5566778889999988 656544344456678899999988876666554 555554
No 496
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=58.60 E-value=1.4e+02 Score=27.04 Aligned_cols=75 Identities=11% Similarity=0.071 Sum_probs=51.5
Q ss_pred ceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCc
Q 010256 343 SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 421 (514)
-|++|...++|.+|++... ..|.+.|-++ ++.+-.+.+....--.+ . -...++-.|-+++-.+..++.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~t-G~I~W~lgG~~~~df~~-----~-----~~~f~~QHdar~~~~~~~~~~ 213 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPST-GKIIWRLGGKRNSDFTL-----P-----ATNFSWQHDARFLNESNDDGT 213 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCC-CcEEEEeCCCCCCcccc-----c-----CCcEeeccCCEEeccCCCCCE
Confidence 3777888889999999866 8999999887 88777776552210000 0 013556666677766678888
Q ss_pred EEEEecC
Q 010256 422 FRVFGCS 428 (514)
Q Consensus 422 i~iwd~~ 428 (514)
|.++|-.
T Consensus 214 IslFDN~ 220 (299)
T PF14269_consen 214 ISLFDNA 220 (299)
T ss_pred EEEEcCC
Confidence 9999863
No 497
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=56.93 E-value=29 Score=18.51 Aligned_cols=23 Identities=9% Similarity=0.094 Sum_probs=19.1
Q ss_pred EEEEeeCCCeEEEEEcCccEEEE
Q 010256 128 LYLLSTNDKTIKLWKVQEKKVKK 150 (514)
Q Consensus 128 ~l~s~~~d~~i~iw~~~~~~~~~ 150 (514)
.++.++.++.+..+|..+|+...
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEE
Confidence 67788889999999998887543
No 498
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=54.79 E-value=3.1e+02 Score=29.63 Aligned_cols=109 Identities=9% Similarity=0.104 Sum_probs=60.3
Q ss_pred EEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccc
Q 010256 239 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 318 (514)
Q Consensus 239 ~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~ 318 (514)
.+..|-..++++|....+++||+-..+...+. .+......|..+.+.- ..++.|...-.+.++-.+.....
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~------e~k~~p~~Is~iqt~~---~RI~VgD~qeSV~~~~y~~~~n~ 1009 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKC------ELKFIPNRISSIQTYG---ARIVVGDIQESVHFVRYRREDNQ 1009 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhh------hhccCceEEEEEeecc---eEEEEeeccceEEEEEEecCCCe
Confidence 45567777888888889999999744333211 2222355677777653 46777776656555444332211
Q ss_pred cccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEcc
Q 010256 319 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDIN 370 (514)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~ 370 (514)
...+-....+ ..++++.+- |...++.++. |.+.+-.+.
T Consensus 1010 ---l~~fadD~~p----------R~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1010 ---LIVFADDPVP----------RHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred ---EEEEeCCCcc----------ceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 2222221111 245555544 4456666665 877776654
No 499
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=52.53 E-value=26 Score=19.99 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=15.7
Q ss_pred CCCEEEEEeCCCcEEEEecCC
Q 010256 409 DGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 409 ~~~~l~s~~~dg~i~iwd~~~ 429 (514)
.+..++.++.||.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 356788889999999999763
No 500
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=52.10 E-value=58 Score=20.55 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCeEEEecC-----CCeEEEEEec
Q 010256 37 IISAIEFDKSGDHLATGDR-----GGRVVLFERT 65 (514)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~-----dg~i~iw~~~ 65 (514)
.+.+++.-|||++|+.|.. +....|..+.
T Consensus 2 ~~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln 35 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYVDNSSGNNDFVLARLN 35 (55)
T ss_pred ceEEEEECCCCcEEEEEEeecCCCcccEEEEEEC
Confidence 5778999999999999963 3345555554
Done!