Query 010256
Match_columns 514
No_of_seqs 559 out of 1882
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 23:16:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 5.5E-50 1.9E-54 400.8 44.3 406 30-513 54-564 (611)
2 3dw8_B Serine/threonine-protei 100.0 9E-50 3.1E-54 385.8 41.2 439 11-514 6-444 (447)
3 1nr0_A Actin interacting prote 100.0 1.4E-46 4.8E-51 376.2 43.4 395 31-514 143-609 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 1.2E-45 4.1E-50 368.8 43.4 358 31-513 217-577 (577)
5 2ymu_A WD-40 repeat protein; u 100.0 3.2E-45 1.1E-49 365.7 44.2 370 31-513 12-454 (577)
6 3ow8_A WD repeat-containing pr 100.0 1.2E-43 3.9E-48 325.6 37.8 283 31-467 28-316 (321)
7 1vyh_C Platelet-activating fac 100.0 8.9E-44 3E-48 338.2 36.9 281 31-467 104-406 (410)
8 2ynn_A Coatomer subunit beta'; 100.0 6.7E-43 2.3E-47 318.6 38.4 284 31-467 9-298 (304)
9 1got_B GT-beta; complex (GTP-b 100.0 9.3E-43 3.2E-47 323.0 37.2 286 31-467 51-338 (340)
10 2oaj_A Protein SNI1; WD40 repe 100.0 4.4E-43 1.5E-47 363.1 36.9 403 31-513 13-658 (902)
11 4gqb_B Methylosome protein 50; 100.0 5.7E-43 2E-47 323.2 32.4 310 10-467 12-326 (344)
12 2pbi_B Guanine nucleotide-bind 100.0 1.2E-41 4.2E-46 316.9 38.6 290 30-467 59-352 (354)
13 4g56_B MGC81050 protein; prote 100.0 1.8E-42 6.1E-47 322.7 32.2 289 32-467 39-338 (357)
14 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-41 4.4E-46 369.1 43.6 378 31-513 611-1155(1249)
15 3ow8_A WD repeat-containing pr 100.0 2.1E-41 7.2E-46 310.6 36.8 290 92-513 24-318 (321)
16 1pgu_A Actin interacting prote 100.0 1.1E-40 3.8E-45 335.6 42.8 388 32-513 15-611 (615)
17 2ynn_A Coatomer subunit beta'; 100.0 7.2E-41 2.5E-45 305.1 37.5 287 92-513 5-299 (304)
18 3sfz_A APAF-1, apoptotic pepti 100.0 9.7E-42 3.3E-46 370.0 37.4 397 14-513 639-1204(1249)
19 1vyh_C Platelet-activating fac 100.0 4.7E-41 1.6E-45 319.5 37.4 286 92-513 100-408 (410)
20 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.6E-41 3.3E-45 310.0 38.0 306 32-467 12-330 (345)
21 3frx_A Guanine nucleotide-bind 100.0 8.9E-41 3E-45 306.6 35.8 298 31-430 13-318 (319)
22 4ery_A WD repeat-containing pr 100.0 5.3E-40 1.8E-44 301.2 39.2 285 31-467 19-307 (312)
23 1got_B GT-beta; complex (GTP-b 100.0 9.6E-40 3.3E-44 302.7 38.9 290 91-513 46-340 (340)
24 3iz6_a 40S ribosomal protein R 100.0 8.5E-41 2.9E-45 314.7 31.4 307 31-430 62-376 (380)
25 3iz6_a 40S ribosomal protein R 100.0 4.6E-40 1.6E-44 309.6 34.0 308 90-467 56-370 (380)
26 2xzm_R RACK1; ribosome, transl 100.0 9.6E-40 3.3E-44 303.3 35.3 306 31-430 17-341 (343)
27 2pm9_A Protein WEB1, protein t 100.0 9.8E-41 3.3E-45 319.3 28.3 339 32-467 9-409 (416)
28 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.9E-39 1.3E-43 299.2 37.8 299 91-513 6-332 (345)
29 1r5m_A SIR4-interacting protei 100.0 1.9E-39 6.4E-44 311.3 36.7 335 30-513 40-422 (425)
30 3mkq_A Coatomer beta'-subunit; 100.0 2.3E-39 7.9E-44 336.7 38.6 362 31-513 9-420 (814)
31 4aow_A Guanine nucleotide-bind 100.0 6.9E-39 2.4E-43 297.8 37.7 302 31-431 34-339 (340)
32 2hes_X YDR267CP; beta-propelle 100.0 4.6E-39 1.6E-43 296.7 35.9 295 31-467 10-323 (330)
33 4g56_B MGC81050 protein; prote 100.0 9.9E-40 3.4E-44 304.2 31.5 244 230-513 91-340 (357)
34 1erj_A Transcriptional repress 100.0 2.7E-39 9.2E-44 305.9 33.9 314 32-429 61-389 (393)
35 4gqb_B Methylosome protein 50; 100.0 8.8E-39 3E-43 295.2 34.6 243 230-513 79-328 (344)
36 2pbi_B Guanine nucleotide-bind 100.0 1.8E-38 6.3E-43 295.4 36.8 292 92-513 56-354 (354)
37 2oaj_A Protein SNI1; WD40 repe 100.0 2.4E-39 8.3E-44 335.1 33.4 424 14-513 81-729 (902)
38 4ery_A WD repeat-containing pr 100.0 1.2E-37 4E-42 285.6 40.6 294 86-514 9-310 (312)
39 1gxr_A ESG1, transducin-like e 100.0 1.2E-38 4E-43 295.8 34.0 325 33-513 7-334 (337)
40 3vl1_A 26S proteasome regulato 100.0 1.3E-38 4.6E-43 304.9 35.4 333 36-513 57-416 (420)
41 4e54_B DNA damage-binding prot 100.0 1.7E-38 5.9E-43 304.7 34.0 294 32-467 116-425 (435)
42 3frx_A Guanine nucleotide-bind 100.0 8.6E-38 2.9E-42 286.8 36.1 294 90-513 7-314 (319)
43 2j04_B YDR362CP, TAU91; beta p 100.0 6.7E-39 2.3E-43 310.5 27.4 338 32-513 130-514 (524)
44 2pm9_A Protein WEB1, protein t 100.0 1.9E-39 6.6E-44 310.3 23.4 339 113-513 13-411 (416)
45 3dm0_A Maltose-binding peripla 100.0 1.1E-37 3.8E-42 317.1 37.0 307 31-428 378-692 (694)
46 2hes_X YDR267CP; beta-propelle 100.0 2.2E-37 7.5E-42 285.5 35.3 300 91-513 5-325 (330)
47 3zwl_B Eukaryotic translation 100.0 2.5E-36 8.5E-41 283.8 39.6 288 31-467 28-341 (369)
48 1pgu_A Actin interacting prote 100.0 3.6E-37 1.2E-41 310.0 35.2 345 30-467 58-609 (615)
49 3mkq_A Coatomer beta'-subunit; 100.0 6.5E-37 2.2E-41 318.3 37.6 382 14-513 37-457 (814)
50 2xzm_R RACK1; ribosome, transl 100.0 3.1E-36 1.1E-40 279.6 36.5 291 90-467 11-335 (343)
51 2pm7_B Protein transport prote 100.0 8.8E-37 3E-41 277.1 32.1 258 31-429 5-285 (297)
52 1k8k_C P40, ARP2/3 complex 41 100.0 2.4E-36 8.2E-41 284.3 36.0 303 33-467 6-356 (372)
53 1gxr_A ESG1, transducin-like e 100.0 8.5E-36 2.9E-40 276.5 38.7 284 31-467 47-332 (337)
54 1erj_A Transcriptional repress 100.0 1.4E-36 4.9E-41 287.2 33.0 297 113-467 65-384 (393)
55 3ei3_B DNA damage-binding prot 100.0 3.5E-36 1.2E-40 284.2 35.6 298 32-467 70-377 (383)
56 4h5i_A Guanine nucleotide-exch 100.0 4.3E-37 1.5E-41 287.1 27.3 305 35-430 14-344 (365)
57 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2E-35 6.7E-40 284.8 39.3 313 31-513 114-439 (445)
58 3bg1_A Protein SEC13 homolog; 100.0 7.3E-37 2.5E-41 280.2 27.1 258 31-429 9-293 (316)
59 3v7d_B Cell division control p 100.0 9.7E-36 3.3E-40 288.8 36.2 321 31-467 117-458 (464)
60 4a11_B DNA excision repair pro 100.0 3E-35 1E-39 280.4 38.4 313 31-467 39-360 (408)
61 3k26_A Polycomb protein EED; W 100.0 2.2E-35 7.4E-40 277.1 36.3 304 32-467 15-361 (366)
62 1sq9_A Antiviral protein SKI8; 100.0 3.7E-36 1.3E-40 285.7 30.7 330 31-430 12-396 (397)
63 3i2n_A WD repeat-containing pr 100.0 9.9E-36 3.4E-40 278.4 31.0 288 32-467 15-348 (357)
64 2j04_A TAU60, YPL007P, hypothe 100.0 2.5E-37 8.5E-42 291.2 19.8 323 33-505 13-349 (588)
65 3dwl_C Actin-related protein 2 100.0 8.1E-37 2.8E-41 288.1 23.1 301 33-467 9-374 (377)
66 4gga_A P55CDC, cell division c 100.0 1.5E-34 5.1E-39 276.2 37.8 277 37-467 107-390 (420)
67 3gre_A Serine/threonine-protei 100.0 1.9E-35 6.3E-40 284.5 31.5 312 32-467 60-435 (437)
68 1r5m_A SIR4-interacting protei 100.0 5.8E-35 2E-39 280.0 32.6 291 34-467 107-420 (425)
69 3jrp_A Fusion protein of prote 100.0 2E-34 7E-39 271.8 34.9 263 31-431 7-289 (379)
70 3zwl_B Eukaryotic translation 100.0 1.2E-33 4.2E-38 265.4 39.6 298 90-513 22-343 (369)
71 1yfq_A Cell cycle arrest prote 100.0 1.2E-34 4.3E-39 269.3 31.8 287 33-467 9-319 (342)
72 4ggc_A P55CDC, cell division c 100.0 3E-34 1E-38 263.8 33.7 284 37-430 27-316 (318)
73 4aow_A Guanine nucleotide-bind 100.0 5.5E-34 1.9E-38 264.7 35.2 290 91-467 29-332 (340)
74 4aez_A CDC20, WD repeat-contai 100.0 9.4E-35 3.2E-39 275.9 30.4 284 37-436 95-387 (401)
75 3odt_A Protein DOA1; ubiquitin 100.0 3.1E-34 1.1E-38 263.1 32.8 276 31-468 14-292 (313)
76 4e54_B DNA damage-binding prot 100.0 9.2E-35 3.1E-39 278.9 29.8 281 113-513 120-427 (435)
77 3ei3_B DNA damage-binding prot 100.0 9.7E-34 3.3E-38 267.5 36.2 291 89-514 62-380 (383)
78 3dm0_A Maltose-binding peripla 100.0 2.7E-34 9.3E-39 292.2 33.9 288 92-467 374-688 (694)
79 2pm7_B Protein transport prote 100.0 8E-34 2.7E-38 257.6 32.9 241 113-467 10-280 (297)
80 4h5i_A Guanine nucleotide-exch 100.0 4.8E-35 1.6E-39 273.3 24.9 295 113-467 15-338 (365)
81 1k8k_C P40, ARP2/3 complex 41 100.0 1.6E-33 5.4E-38 265.1 35.0 288 113-513 9-358 (372)
82 3vl1_A 26S proteasome regulato 100.0 2.7E-33 9.1E-38 268.1 36.9 282 36-467 98-414 (420)
83 3bg1_A Protein SEC13 homolog; 100.0 1.6E-34 5.4E-39 264.6 25.7 243 113-467 14-288 (316)
84 1sq9_A Antiviral protein SKI8; 100.0 1.1E-33 3.7E-38 268.7 32.1 305 92-513 8-392 (397)
85 3k26_A Polycomb protein EED; W 100.0 6E-34 2.1E-38 267.2 29.4 301 113-513 19-363 (366)
86 3gre_A Serine/threonine-protei 100.0 3.6E-34 1.2E-38 275.5 28.0 323 42-513 34-437 (437)
87 3v7d_B Cell division control p 100.0 1E-32 3.5E-37 267.5 36.8 325 93-512 114-458 (464)
88 3jro_A Fusion protein of prote 100.0 3E-34 1E-38 293.2 27.3 258 31-431 5-287 (753)
89 3mmy_A MRNA export factor; mRN 100.0 1.4E-32 4.7E-37 258.1 36.0 293 31-467 35-341 (368)
90 3f3f_A Nucleoporin SEH1; struc 100.0 6.6E-33 2.3E-37 258.3 32.6 273 31-432 7-340 (351)
91 2j04_B YDR362CP, TAU91; beta p 100.0 3.7E-34 1.3E-38 277.3 24.3 292 33-467 205-512 (524)
92 3odt_A Protein DOA1; ubiquitin 100.0 4.6E-32 1.6E-36 248.6 37.0 283 89-513 7-293 (313)
93 3i2n_A WD repeat-containing pr 100.0 6.5E-33 2.2E-37 259.3 31.3 247 231-513 63-350 (357)
94 3dwl_C Actin-related protein 2 100.0 5.7E-34 2E-38 268.5 23.8 243 113-467 12-277 (377)
95 1p22_A F-BOX/WD-repeat protein 100.0 2E-32 6.8E-37 262.8 34.5 269 33-467 131-409 (435)
96 4gga_A P55CDC, cell division c 100.0 1.1E-31 3.9E-36 256.2 34.2 248 32-431 144-397 (420)
97 3lrv_A PRE-mRNA-splicing facto 100.0 1.6E-32 5.4E-37 254.8 27.4 278 42-467 43-328 (343)
98 2j04_A TAU60, YPL007P, hypothe 100.0 1.4E-33 4.8E-38 265.8 20.1 288 112-512 15-317 (588)
99 4aez_A CDC20, WD repeat-contai 100.0 6.5E-32 2.2E-36 256.3 31.6 273 114-467 95-375 (401)
100 1yfq_A Cell cycle arrest prote 100.0 1.2E-31 4.1E-36 249.1 31.7 271 113-509 12-315 (342)
101 4a11_B DNA excision repair pro 100.0 8.5E-32 2.9E-36 256.5 30.8 313 94-513 37-362 (408)
102 2aq5_A Coronin-1A; WD40 repeat 100.0 9.8E-32 3.4E-36 255.3 31.1 288 37-467 36-337 (402)
103 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.2E-31 3.1E-35 252.2 35.9 283 14-464 141-430 (445)
104 4gq1_A NUP37; propeller, trans 100.0 1.2E-31 4.1E-36 253.2 28.5 229 229-467 132-385 (393)
105 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.5E-30 5.1E-35 250.8 35.8 249 113-461 103-374 (450)
106 4ggc_A P55CDC, cell division c 100.0 1.2E-30 4.1E-35 239.7 33.1 276 115-467 28-310 (318)
107 3vu4_A KMHSV2; beta-propeller 100.0 2.5E-30 8.6E-35 240.6 34.4 285 32-467 16-331 (355)
108 3mmy_A MRNA export factor; mRN 100.0 1.9E-30 6.6E-35 243.5 33.3 282 92-507 31-336 (368)
109 3jrp_A Fusion protein of prote 100.0 1.3E-30 4.3E-35 245.8 31.4 250 92-467 3-282 (379)
110 3f3f_A Nucleoporin SEH1; struc 100.0 8.5E-31 2.9E-35 244.0 29.0 304 113-513 12-334 (351)
111 2aq5_A Coronin-1A; WD40 repeat 100.0 2.9E-31 1E-35 252.1 25.9 280 199-513 51-339 (402)
112 4gq1_A NUP37; propeller, trans 100.0 2.2E-31 7.5E-36 251.4 23.1 259 230-513 86-386 (393)
113 2xyi_A Probable histone-bindin 100.0 2.8E-30 9.4E-35 247.2 29.6 269 30-430 123-411 (430)
114 2xyi_A Probable histone-bindin 100.0 1.2E-29 4.3E-34 242.7 32.6 262 109-467 125-405 (430)
115 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.2E-29 2.5E-33 239.1 35.4 238 230-505 99-373 (450)
116 1p22_A F-BOX/WD-repeat protein 100.0 2.4E-29 8E-34 241.4 31.3 269 113-513 134-411 (435)
117 3dw8_B Serine/threonine-protei 100.0 2.7E-29 9.4E-34 242.3 28.6 274 112-468 28-369 (447)
118 3bws_A Protein LP49; two-domai 100.0 1.9E-28 6.4E-33 235.4 33.5 279 113-513 123-429 (433)
119 1l0q_A Surface layer protein; 100.0 2.8E-28 9.6E-33 230.8 33.4 278 48-443 3-288 (391)
120 3jro_A Fusion protein of prote 100.0 5.2E-29 1.8E-33 254.6 27.9 248 95-467 4-280 (753)
121 3bws_A Protein LP49; two-domai 100.0 2E-27 7E-32 228.1 33.7 280 33-467 120-427 (433)
122 3vu4_A KMHSV2; beta-propeller 100.0 6.9E-27 2.4E-31 217.4 35.1 226 236-512 61-332 (355)
123 2w18_A PALB2, fancn, partner a 100.0 2.4E-27 8.2E-32 209.7 29.7 274 37-427 41-355 (356)
124 2w18_A PALB2, fancn, partner a 100.0 2E-27 6.7E-32 210.3 27.1 194 231-467 134-352 (356)
125 3lrv_A PRE-mRNA-splicing facto 100.0 5.2E-28 1.8E-32 224.3 24.6 188 280-507 123-323 (343)
126 1nir_A Nitrite reductase; hemo 100.0 3.6E-26 1.2E-30 223.4 36.0 327 42-514 144-512 (543)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 9E-27 3.1E-31 221.0 26.2 219 230-499 175-410 (415)
128 1l0q_A Surface layer protein; 100.0 1.1E-25 3.7E-30 213.0 33.6 317 32-459 28-365 (391)
129 1k32_A Tricorn protease; prote 100.0 2.6E-26 8.9E-31 243.5 31.5 374 31-506 48-491 (1045)
130 2ecf_A Dipeptidyl peptidase IV 100.0 7.2E-26 2.5E-30 232.5 32.4 335 35-505 36-443 (741)
131 1k32_A Tricorn protease; prote 99.9 3.5E-25 1.2E-29 234.9 31.4 365 32-513 200-634 (1045)
132 1xfd_A DIP, dipeptidyl aminope 99.9 6.1E-25 2.1E-29 225.1 28.9 334 36-505 17-428 (723)
133 1nir_A Nitrite reductase; hemo 99.9 6.1E-23 2.1E-27 200.5 35.3 293 38-471 181-513 (543)
134 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.2E-23 2.1E-27 194.6 33.3 261 31-454 113-410 (415)
135 2z3z_A Dipeptidyl aminopeptida 99.9 4.8E-23 1.6E-27 210.3 30.3 247 235-513 122-432 (706)
136 3u4y_A Uncharacterized protein 99.9 1.6E-21 5.3E-26 179.9 34.1 288 41-430 3-305 (331)
137 3vgz_A Uncharacterized protein 99.9 2.8E-21 9.4E-26 180.0 33.3 283 33-462 38-334 (353)
138 1ri6_A Putative isomerase YBHE 99.9 1.5E-21 5E-26 181.0 31.3 235 235-500 85-336 (343)
139 2ojh_A Uncharacterized protein 99.9 4E-22 1.4E-26 180.6 25.0 258 52-463 17-293 (297)
140 2ojh_A Uncharacterized protein 99.9 5.1E-22 1.7E-26 179.9 23.4 234 231-507 39-292 (297)
141 1ri6_A Putative isomerase YBHE 99.9 8.4E-21 2.9E-25 175.9 31.4 283 31-452 33-333 (343)
142 1z68_A Fibroblast activation p 99.9 5.8E-22 2E-26 202.7 24.9 328 40-504 20-427 (719)
143 2ecf_A Dipeptidyl peptidase IV 99.9 1.6E-21 5.6E-26 200.1 28.3 304 113-513 37-410 (741)
144 2z3z_A Dipeptidyl aminopeptida 99.9 3.6E-21 1.2E-25 196.4 26.7 307 36-431 82-437 (706)
145 3hfq_A Uncharacterized protein 99.9 3.9E-20 1.3E-24 171.7 31.1 271 31-430 35-320 (347)
146 3u4y_A Uncharacterized protein 99.9 2.9E-20 1E-24 171.4 29.7 272 126-469 10-301 (331)
147 1pby_B Quinohemoprotein amine 99.9 9E-21 3.1E-25 175.2 25.7 273 48-432 2-313 (337)
148 1xfd_A DIP, dipeptidyl aminope 99.9 1.2E-20 4E-25 193.3 28.3 289 176-513 21-390 (723)
149 3o4h_A Acylamino-acid-releasin 99.9 4.6E-21 1.6E-25 190.9 23.4 269 34-464 20-304 (582)
150 1pby_B Quinohemoprotein amine 99.9 1.2E-20 4.2E-25 174.3 24.2 233 236-513 36-307 (337)
151 3vgz_A Uncharacterized protein 99.9 2.2E-19 7.6E-24 167.0 31.8 234 236-506 91-333 (353)
152 3hfq_A Uncharacterized protein 99.9 7.6E-19 2.6E-23 163.0 31.7 214 234-467 86-312 (347)
153 4a5s_A Dipeptidyl peptidase 4 99.9 1.3E-18 4.4E-23 177.8 35.2 326 37-505 18-434 (740)
154 3o4h_A Acylamino-acid-releasin 99.9 7.9E-20 2.7E-24 182.0 24.8 259 113-507 22-302 (582)
155 3scy_A Hypothetical bacterial 99.9 2.2E-18 7.6E-23 160.7 33.0 290 34-450 48-360 (361)
156 1jmx_B Amine dehydrogenase; ox 99.8 3.9E-19 1.3E-23 165.1 25.6 254 40-432 4-328 (349)
157 2oit_A Nucleoporin 214KDA; NH2 99.8 2.6E-18 9E-23 163.3 31.5 230 32-370 89-332 (434)
158 3scy_A Hypothetical bacterial 99.8 4E-17 1.4E-21 152.2 38.7 205 235-467 101-332 (361)
159 2oit_A Nucleoporin 214KDA; NH2 99.8 2.3E-19 8E-24 170.5 23.4 230 34-371 35-278 (434)
160 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.6E-17 5.6E-22 154.9 31.2 259 113-430 40-342 (365)
161 3pe7_A Oligogalacturonate lyas 99.8 4E-18 1.4E-22 160.8 24.7 292 41-467 41-377 (388)
162 1jmx_B Amine dehydrogenase; ox 99.8 1.2E-17 4E-22 155.0 24.5 248 236-513 45-322 (349)
163 1z68_A Fibroblast activation p 99.8 9.8E-18 3.4E-22 171.4 23.2 291 37-458 61-426 (719)
164 3azo_A Aminopeptidase; POP fam 99.8 7.5E-17 2.6E-21 163.2 27.2 203 232-467 128-362 (662)
165 1q7f_A NHL, brain tumor CG1071 99.8 2.7E-15 9.3E-20 134.8 33.8 265 11-430 7-281 (286)
166 4a5s_A Dipeptidyl peptidase 4 99.8 1.6E-16 5.5E-21 162.4 27.9 204 237-467 65-346 (740)
167 3pe7_A Oligogalacturonate lyas 99.8 1.3E-16 4.5E-21 150.3 24.9 221 238-505 85-369 (388)
168 3c5m_A Oligogalacturonate lyas 99.8 1.8E-17 6.1E-22 156.8 18.7 293 34-467 34-377 (396)
169 2oiz_A Aromatic amine dehydrog 99.8 9.5E-16 3.3E-20 142.1 29.4 278 117-454 54-360 (361)
170 1jof_A Carboxy-CIS,CIS-muconat 99.7 2E-16 6.7E-21 147.6 22.8 258 35-371 39-341 (365)
171 2oiz_A Aromatic amine dehydrog 99.7 4.4E-15 1.5E-19 137.7 26.0 312 124-499 13-360 (361)
172 2dg1_A DRP35, lactonase; beta 99.7 1.1E-14 3.8E-19 134.0 27.6 276 36-462 6-300 (333)
173 1qks_A Cytochrome CD1 nitrite 99.7 4.6E-13 1.6E-17 130.4 39.4 323 45-513 165-535 (567)
174 1q7f_A NHL, brain tumor CG1071 99.7 4.3E-14 1.5E-18 126.9 28.8 245 230-513 26-277 (286)
175 3fvz_A Peptidyl-glycine alpha- 99.7 3.9E-14 1.3E-18 129.8 28.4 259 36-429 24-322 (329)
176 3azo_A Aminopeptidase; POP fam 99.7 1.4E-14 4.7E-19 146.6 26.0 183 242-467 87-318 (662)
177 2dg1_A DRP35, lactonase; beta 99.7 1.6E-13 5.4E-18 126.3 30.7 270 176-507 10-300 (333)
178 3fvz_A Peptidyl-glycine alpha- 99.7 1E-13 3.4E-18 127.1 28.2 214 231-467 88-317 (329)
179 3e5z_A Putative gluconolactona 99.6 1.2E-13 4.1E-18 124.7 26.8 241 33-430 25-287 (296)
180 3e5z_A Putative gluconolactona 99.6 1.4E-13 4.7E-18 124.3 25.9 237 231-513 25-283 (296)
181 2z2n_A Virginiamycin B lyase; 99.6 4.8E-12 1.7E-16 114.2 36.1 277 34-467 13-291 (299)
182 3c5m_A Oligogalacturonate lyas 99.6 1E-14 3.5E-19 137.8 19.0 217 239-506 86-370 (396)
183 2gop_A Trilobed protease; beta 99.6 2.7E-13 9.3E-18 125.5 27.1 282 31-464 10-322 (347)
184 2z2n_A Virginiamycin B lyase; 99.6 1.6E-11 5.6E-16 110.7 37.2 233 234-513 57-292 (299)
185 2xdw_A Prolyl endopeptidase; a 99.6 2.1E-13 7.2E-18 138.8 26.3 161 232-431 231-416 (710)
186 2bkl_A Prolyl endopeptidase; m 99.6 1.5E-13 5.1E-18 139.4 22.7 251 33-432 118-400 (695)
187 1qks_A Cytochrome CD1 nitrite 99.6 1.6E-11 5.6E-16 119.5 35.5 300 33-471 194-537 (567)
188 2bkl_A Prolyl endopeptidase; m 99.6 3.2E-13 1.1E-17 136.9 23.9 239 230-513 117-394 (695)
189 2xdw_A Prolyl endopeptidase; a 99.6 4.6E-13 1.6E-17 136.3 24.7 241 230-513 121-411 (710)
190 2gop_A Trilobed protease; beta 99.6 1.5E-12 5.2E-17 120.4 26.3 209 235-505 60-318 (347)
191 1rwi_B Serine/threonine-protei 99.6 2.7E-12 9.1E-17 114.1 26.0 238 37-430 25-265 (270)
192 2qc5_A Streptogramin B lactona 99.5 9.6E-11 3.3E-15 105.7 34.9 270 35-460 19-290 (300)
193 3no2_A Uncharacterized protein 99.5 1.5E-11 5.2E-16 108.9 28.4 185 235-459 38-230 (276)
194 1rwi_B Serine/threonine-protei 99.5 1.3E-11 4.3E-16 109.7 27.2 233 235-513 25-261 (270)
195 3dsm_A Uncharacterized protein 99.5 6E-11 2E-15 108.4 29.4 233 234-513 44-299 (328)
196 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 3.4E-11 1.2E-15 109.5 27.3 158 235-430 118-300 (314)
197 3no2_A Uncharacterized protein 99.5 4.8E-11 1.6E-15 105.7 27.0 225 46-417 4-231 (276)
198 2qc5_A Streptogramin B lactona 99.5 5.3E-10 1.8E-14 100.8 34.4 234 234-513 62-297 (300)
199 1yr2_A Prolyl oligopeptidase; 99.5 4.5E-12 1.5E-16 129.5 23.0 236 232-513 161-438 (741)
200 3dsm_A Uncharacterized protein 99.5 3.3E-11 1.1E-15 110.1 26.3 249 36-438 44-309 (328)
201 3sjl_D Methylamine dehydrogena 99.5 3.7E-11 1.3E-15 109.6 25.9 283 121-471 39-362 (386)
202 1yr2_A Prolyl oligopeptidase; 99.4 9.1E-12 3.1E-16 127.3 22.4 159 234-431 268-443 (741)
203 2mad_H Methylamine dehydrogena 99.4 1.6E-09 5.4E-14 100.3 34.1 294 42-433 27-354 (373)
204 3sjl_D Methylamine dehydrogena 99.4 2.6E-10 8.9E-15 104.0 28.2 314 41-452 38-384 (386)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 5.2E-10 1.8E-14 101.6 27.3 238 234-513 18-296 (314)
206 3g4e_A Regucalcin; six bladed 99.4 9.6E-10 3.3E-14 98.9 28.6 234 36-418 13-261 (297)
207 3c75_H MADH, methylamine dehyd 99.4 3.4E-10 1.2E-14 105.3 25.0 292 45-433 82-406 (426)
208 2qe8_A Uncharacterized protein 99.3 5.1E-10 1.7E-14 102.9 24.8 270 36-462 17-311 (343)
209 3hrp_A Uncharacterized protein 99.3 2.6E-09 8.8E-14 100.4 28.8 268 113-427 131-408 (409)
210 2mad_H Methylamine dehydrogena 99.3 9.2E-09 3.2E-13 95.2 31.9 286 123-470 29-348 (373)
211 3iuj_A Prolyl endopeptidase; h 99.3 3.1E-10 1.1E-14 114.8 23.9 160 232-431 232-407 (693)
212 3dr2_A Exported gluconolactona 99.3 1.3E-09 4.5E-14 98.4 25.6 232 33-420 42-298 (305)
213 3g4e_A Regucalcin; six bladed 99.3 1.9E-09 6.5E-14 96.9 25.9 226 234-505 13-260 (297)
214 3dr2_A Exported gluconolactona 99.3 1E-09 3.5E-14 99.1 24.0 232 232-513 43-303 (305)
215 1xip_A Nucleoporin NUP159; bet 99.3 1.7E-10 5.9E-15 105.7 18.4 179 235-458 39-230 (388)
216 3c75_H MADH, methylamine dehyd 99.2 3.3E-09 1.1E-13 98.7 24.7 288 121-471 79-401 (426)
217 2ghs_A AGR_C_1268P; regucalcin 99.2 8.7E-09 3E-13 93.9 27.3 144 235-418 135-291 (326)
218 3hrp_A Uncharacterized protein 99.2 5.7E-09 2E-13 98.0 26.0 259 36-369 131-408 (409)
219 1xip_A Nucleoporin NUP159; bet 99.2 2.8E-10 9.7E-15 104.3 16.4 184 284-504 39-231 (388)
220 2ghs_A AGR_C_1268P; regucalcin 99.2 1.7E-08 5.8E-13 92.0 28.3 224 236-505 51-290 (326)
221 3iuj_A Prolyl endopeptidase; h 99.2 7.2E-10 2.5E-14 112.1 20.0 237 231-513 126-402 (693)
222 1mda_H Methylamine dehydrogena 99.2 1.5E-08 5.2E-13 92.6 24.0 257 117-441 69-357 (368)
223 2ece_A 462AA long hypothetical 99.1 6.8E-08 2.3E-12 88.8 27.2 169 238-417 192-399 (462)
224 2qe8_A Uncharacterized protein 99.1 1.8E-08 6E-13 92.6 23.2 254 234-505 17-309 (343)
225 1kb0_A Quinohemoprotein alcoho 99.1 6.5E-08 2.2E-12 97.0 27.9 200 237-456 246-534 (677)
226 1yiq_A Quinohemoprotein alcoho 99.1 9.7E-08 3.3E-12 95.9 27.3 198 238-454 239-530 (689)
227 4a2l_A BT_4663, two-component 99.0 2.3E-05 7.9E-10 80.7 42.4 385 38-513 175-568 (795)
228 2ece_A 462AA long hypothetical 99.0 3.7E-07 1.3E-11 84.0 24.7 240 198-460 99-399 (462)
229 1mda_H Methylamine dehydrogena 99.0 7.3E-08 2.5E-12 88.2 20.0 256 40-385 69-359 (368)
230 3q7m_A Lipoprotein YFGL, BAMB; 98.9 1.1E-06 3.8E-11 81.8 28.2 309 46-467 52-373 (376)
231 4a2l_A BT_4663, two-component 98.9 4.5E-05 1.5E-09 78.5 42.4 388 35-513 214-611 (795)
232 1npe_A Nidogen, entactin; glyc 98.9 1E-05 3.5E-10 71.1 30.3 176 235-453 80-262 (267)
233 2hz6_A Endoplasmic reticulum t 98.8 2.9E-09 1E-13 98.7 6.8 144 243-432 47-195 (369)
234 3hxj_A Pyrrolo-quinoline quino 98.8 7.5E-08 2.6E-12 87.9 15.9 183 234-467 137-319 (330)
235 1yiq_A Quinohemoprotein alcoho 98.8 9.6E-07 3.3E-11 88.7 24.9 335 127-502 71-533 (689)
236 1kb0_A Quinohemoprotein alcoho 98.7 1.4E-06 4.9E-11 87.3 22.7 78 305-414 457-535 (677)
237 3v9f_A Two-component system se 98.7 0.00016 5.3E-09 74.4 37.2 393 35-513 257-653 (781)
238 3v9f_A Two-component system se 98.7 0.00027 9.1E-09 72.6 38.7 396 36-513 115-521 (781)
239 1fwx_A Nitrous oxide reductase 98.7 8E-07 2.8E-11 84.8 17.8 191 242-460 161-406 (595)
240 3hxj_A Pyrrolo-quinoline quino 98.7 1.7E-06 5.8E-11 78.9 19.7 211 245-511 107-318 (330)
241 1kv9_A Type II quinohemoprotei 98.7 2.7E-05 9.2E-10 78.0 29.5 178 238-433 234-492 (668)
242 2iwa_A Glutamine cyclotransfer 98.6 1.1E-05 3.9E-10 69.5 22.2 210 32-315 15-238 (266)
243 2fp8_A Strictosidine synthase; 98.6 2.4E-05 8.3E-10 70.9 25.6 155 236-429 128-313 (322)
244 1fwx_A Nitrous oxide reductase 98.6 2E-06 6.9E-11 82.1 18.1 261 45-371 99-431 (595)
245 2iwa_A Glutamine cyclotransfer 98.6 9.8E-06 3.4E-10 69.9 20.7 190 284-511 22-232 (266)
246 3q7m_A Lipoprotein YFGL, BAMB; 98.6 1.4E-05 4.7E-10 74.3 23.0 264 46-426 102-375 (376)
247 2hz6_A Endoplasmic reticulum t 98.5 1.6E-08 5.5E-13 93.7 1.7 176 244-468 8-188 (369)
248 3nol_A Glutamine cyclotransfer 98.5 2.3E-05 7.9E-10 66.7 20.5 190 36-301 43-243 (262)
249 3nol_A Glutamine cyclotransfer 98.5 3.6E-05 1.2E-09 65.5 21.0 190 283-512 43-250 (262)
250 2p4o_A Hypothetical protein; p 98.5 0.00052 1.8E-08 61.5 30.1 193 235-460 73-276 (306)
251 2p4o_A Hypothetical protein; p 98.4 0.00024 8.1E-09 63.7 26.1 234 234-506 32-277 (306)
252 2ad6_A Methanol dehydrogenase 98.4 9E-05 3.1E-09 72.6 24.7 55 362-433 444-498 (571)
253 3qqz_A Putative uncharacterize 98.4 0.00074 2.5E-08 57.8 29.4 177 235-428 71-252 (255)
254 3nok_A Glutaminyl cyclase; bet 98.4 5.2E-05 1.8E-09 64.5 18.9 183 234-459 55-253 (268)
255 1npe_A Nidogen, entactin; glyc 98.4 0.00063 2.2E-08 59.5 26.7 191 235-468 37-234 (267)
256 2fp8_A Strictosidine synthase; 98.3 0.00011 3.7E-09 66.6 21.9 194 235-461 20-248 (322)
257 3nok_A Glutaminyl cyclase; bet 98.3 5.7E-05 1.9E-09 64.3 18.1 185 283-508 55-256 (268)
258 3v65_B Low-density lipoprotein 98.3 0.0022 7.4E-08 59.5 31.5 171 237-449 162-337 (386)
259 3mbr_X Glutamine cyclotransfer 98.3 0.00039 1.3E-08 58.6 22.6 187 282-508 20-225 (243)
260 1flg_A Protein (quinoprotein e 98.3 0.00022 7.4E-09 70.0 23.9 55 362-433 466-520 (582)
261 3mbr_X Glutamine cyclotransfer 98.3 0.00028 9.5E-09 59.6 20.8 182 234-457 21-219 (243)
262 2xe4_A Oligopeptidase B; hydro 98.3 7.7E-05 2.6E-09 76.0 20.8 193 235-467 175-393 (751)
263 3v64_C Agrin; beta propeller, 98.2 0.0027 9.3E-08 57.9 32.4 157 236-433 118-279 (349)
264 1w6s_A Methanol dehydrogenase 98.2 0.0016 5.6E-08 63.7 28.5 80 238-319 245-347 (599)
265 1k3i_A Galactose oxidase precu 98.2 0.00035 1.2E-08 70.0 24.6 252 236-506 245-530 (656)
266 1ijq_A LDL receptor, low-densi 98.2 0.0031 1.1E-07 56.6 28.1 228 136-433 10-242 (316)
267 3qqz_A Putative uncharacterize 98.2 0.0016 5.5E-08 55.8 23.9 212 278-512 22-249 (255)
268 1kv9_A Type II quinohemoprotei 98.2 0.00021 7.2E-09 71.5 21.4 307 127-469 67-485 (668)
269 1k3i_A Galactose oxidase precu 98.2 0.00087 3E-08 67.2 25.6 78 40-152 190-281 (656)
270 2xe4_A Oligopeptidase B; hydro 98.1 0.0023 7.7E-08 65.2 27.3 31 37-67 175-211 (751)
271 2ad6_A Methanol dehydrogenase 98.1 0.0018 6.2E-08 63.4 25.3 170 287-469 239-491 (571)
272 3p5b_L Low density lipoprotein 98.0 0.0087 3E-07 55.7 28.7 250 128-449 85-339 (400)
273 4hw6_A Hypothetical protein, I 98.0 0.0034 1.2E-07 59.0 25.3 268 114-428 140-432 (433)
274 1w6s_A Methanol dehydrogenase 98.0 0.0045 1.5E-07 60.7 25.4 85 287-380 245-350 (599)
275 3sre_A PON1, serum paraoxonase 97.9 0.0047 1.6E-07 55.8 23.6 197 235-460 51-285 (355)
276 3tc9_A Hypothetical hydrolase; 97.9 0.0049 1.7E-07 58.0 24.7 159 114-314 138-301 (430)
277 3kya_A Putative phosphatase; s 97.9 0.011 3.9E-07 55.8 26.5 224 234-467 186-470 (496)
278 2xbg_A YCF48-like protein; pho 97.9 0.013 4.3E-07 52.9 27.2 231 234-511 80-317 (327)
279 3ei3_A DNA damage-binding prot 97.9 0.042 1.4E-06 58.3 35.9 33 35-67 553-592 (1158)
280 3m0c_C LDL receptor, low-densi 97.8 0.015 5.1E-07 58.9 27.6 160 234-433 471-636 (791)
281 2ism_A Putative oxidoreductase 97.8 0.017 5.7E-07 52.7 25.3 113 234-358 31-151 (352)
282 2p9w_A MAL S 1 allergenic prot 97.8 0.016 5.3E-07 51.3 24.9 214 236-467 15-260 (334)
283 3v65_B Low-density lipoprotein 97.8 0.017 5.9E-07 53.4 25.6 192 234-467 116-313 (386)
284 3v64_C Agrin; beta propeller, 97.7 0.026 8.8E-07 51.4 26.6 189 236-467 36-229 (349)
285 4hw6_A Hypothetical protein, I 97.7 0.033 1.1E-06 52.3 26.8 255 36-370 139-432 (433)
286 1n7d_A LDL receptor, low-densi 97.6 0.00061 2.1E-08 68.4 13.9 175 235-449 454-633 (699)
287 3tc9_A Hypothetical hydrolase; 97.6 0.0068 2.3E-07 57.0 19.8 148 284-467 138-296 (430)
288 2p9w_A MAL S 1 allergenic prot 97.6 0.034 1.2E-06 49.1 22.4 175 282-469 12-212 (334)
289 1ijq_A LDL receptor, low-densi 97.5 0.045 1.5E-06 49.0 25.9 180 247-467 3-190 (316)
290 1flg_A Protein (quinoprotein e 97.5 0.09 3.1E-06 51.5 31.9 77 419-502 465-544 (582)
291 3s94_A LRP-6, low-density lipo 97.4 0.13 4.5E-06 50.7 38.8 370 35-504 39-452 (619)
292 3m0c_C LDL receptor, low-densi 97.4 0.09 3.1E-06 53.3 25.4 183 247-467 397-584 (791)
293 2xbg_A YCF48-like protein; pho 97.3 0.08 2.7E-06 47.6 29.8 236 234-510 36-273 (327)
294 3a9g_A Putative uncharacterize 97.3 0.088 3E-06 47.9 25.4 112 234-358 29-151 (354)
295 3sov_A LRP-6, low-density lipo 97.3 0.086 3E-06 47.1 23.3 192 235-467 36-233 (318)
296 3p5b_L Low density lipoprotein 97.1 0.19 6.6E-06 46.5 26.4 184 246-467 84-272 (400)
297 4a0p_A LRP6, LRP-6, low-densit 97.0 0.32 1.1E-05 48.1 41.9 197 36-315 37-238 (628)
298 3amr_A 3-phytase; beta-propell 97.0 0.18 6.1E-06 45.0 22.6 150 253-428 98-262 (355)
299 3kya_A Putative phosphatase; s 97.0 0.067 2.3E-06 50.6 18.6 155 284-467 140-336 (496)
300 3pbp_A Nucleoporin NUP82; beta 97.0 0.11 3.8E-06 47.5 19.1 165 240-425 27-208 (452)
301 3sov_A LRP-6, low-density lipo 96.9 0.21 7E-06 44.6 29.2 157 236-433 81-242 (318)
302 1n7d_A LDL receptor, low-densi 96.8 0.016 5.3E-07 58.3 13.5 193 234-467 406-609 (699)
303 3sre_A PON1, serum paraoxonase 96.7 0.27 9.2E-06 44.4 20.0 156 233-428 111-297 (355)
304 3amr_A 3-phytase; beta-propell 96.7 0.32 1.1E-05 43.4 20.7 111 199-313 147-262 (355)
305 3ei3_A DNA damage-binding prot 96.7 0.91 3.1E-05 48.3 35.3 43 112-154 553-600 (1158)
306 1tl2_A L10, protein (tachylect 96.5 0.08 2.7E-06 43.5 13.2 141 343-504 42-199 (236)
307 3pbp_A Nucleoporin NUP82; beta 96.3 0.15 5E-06 46.7 15.2 126 235-367 67-208 (452)
308 3das_A Putative oxidoreductase 96.3 0.57 2E-05 42.0 28.5 115 234-358 32-156 (347)
309 3s94_A LRP-6, low-density lipo 96.3 1 3.5E-05 44.4 37.5 142 343-506 350-498 (619)
310 1bpo_A Protein (clathrin); cla 96.2 0.77 2.6E-05 42.1 25.0 162 245-433 116-293 (494)
311 3s25_A Hypothetical 7-bladed b 96.1 0.59 2E-05 41.2 18.2 124 347-504 109-240 (302)
312 2g8s_A Glucose/sorbosone dehyd 95.9 0.91 3.1E-05 41.1 28.2 118 234-359 18-147 (353)
313 1tl2_A L10, protein (tachylect 95.9 0.56 1.9E-05 38.6 16.2 156 284-467 42-205 (236)
314 4a0p_A LRP6, LRP-6, low-densit 95.9 1.5 5.1E-05 43.3 33.4 153 236-431 82-239 (628)
315 1cru_A Protein (soluble quinop 95.9 0.66 2.2E-05 43.7 18.5 116 234-359 27-161 (454)
316 2ism_A Putative oxidoreductase 95.9 0.98 3.3E-05 40.9 25.8 56 403-459 272-332 (352)
317 3a9g_A Putative uncharacterize 95.5 1.4 4.8E-05 39.9 26.4 27 36-63 29-55 (354)
318 2xzh_A Clathrin heavy chain 1; 95.0 1.8 6.1E-05 38.1 26.2 160 246-433 118-294 (365)
319 3das_A Putative oxidoreductase 94.9 2 6.8E-05 38.5 25.9 33 35-67 31-63 (347)
320 3ott_A Two-component system se 94.8 3.9 0.00013 41.5 39.4 247 234-513 324-583 (758)
321 1cru_A Protein (soluble quinop 94.8 1.7 5.7E-05 41.0 17.2 33 283-316 27-59 (454)
322 2xzh_A Clathrin heavy chain 1; 94.4 2.4 8.3E-05 37.3 28.2 133 234-382 152-300 (365)
323 2g8s_A Glucose/sorbosone dehyd 94.3 2.9 9.9E-05 37.7 29.1 29 36-64 18-46 (353)
324 1xi4_A Clathrin heavy chain; a 94.0 4.5 0.00015 43.5 19.3 161 245-433 116-293 (1630)
325 3q6k_A 43.2 kDa salivary prote 92.5 6 0.00021 35.8 20.5 158 255-429 124-306 (381)
326 1bpo_A Protein (clathrin); cla 92.3 6.9 0.00023 36.1 29.6 165 234-429 151-331 (494)
327 3sbq_A Nitrous-oxide reductase 92.2 2.9 0.0001 39.8 13.4 105 343-459 324-452 (638)
328 3ott_A Two-component system se 92.0 12 0.0004 38.0 37.7 251 234-513 279-542 (758)
329 2vpj_A Kelch-like protein 12; 91.2 7 0.00024 34.0 23.6 25 409-433 253-282 (301)
330 2wg3_C Hedgehog-interacting pr 90.6 11 0.00038 35.3 30.8 119 234-361 14-158 (463)
331 3s25_A Hypothetical 7-bladed b 88.6 12 0.00041 32.8 20.6 106 239-380 150-262 (302)
332 2vpj_A Kelch-like protein 12; 88.2 12 0.00042 32.4 21.1 25 409-433 206-235 (301)
333 3ii7_A Kelch-like protein 7; p 86.7 15 0.00052 31.9 22.3 52 409-462 200-257 (306)
334 1xi4_A Clathrin heavy chain; a 86.0 43 0.0015 36.4 18.2 154 252-449 46-206 (1630)
335 2be1_A Serine/threonine-protei 84.0 9.2 0.00032 34.1 10.6 111 296-433 11-134 (339)
336 2xn4_A Kelch-like protein 2; s 83.0 23 0.00077 30.7 23.5 24 409-432 251-279 (302)
337 3sbq_A Nitrous-oxide reductase 82.0 3.8 0.00013 39.0 7.5 79 235-314 324-408 (638)
338 3ii7_A Kelch-like protein 7; p 80.8 27 0.00093 30.3 26.2 25 409-433 247-276 (306)
339 4asc_A Kelch repeat and BTB do 79.2 32 0.0011 30.0 18.4 25 409-433 196-225 (315)
340 4hvt_A Ritya.17583.B, post-pro 78.4 57 0.002 32.6 21.0 223 237-502 132-411 (711)
341 2wg3_C Hedgehog-interacting pr 77.0 43 0.0015 31.4 13.2 28 343-370 15-44 (463)
342 2xn4_A Kelch-like protein 2; s 74.0 43 0.0015 28.9 22.6 25 409-433 204-233 (302)
343 2zwa_A Leucine carboxyl methyl 73.9 75 0.0026 31.7 16.3 158 244-433 451-639 (695)
344 2be1_A Serine/threonine-protei 72.9 51 0.0017 29.3 19.5 26 245-270 111-137 (339)
345 4gq2_M Nucleoporin NUP120; bet 72.9 67 0.0023 33.5 14.6 40 114-155 237-276 (950)
346 1zgk_A Kelch-like ECH-associat 72.6 47 0.0016 28.8 21.0 25 409-433 215-244 (308)
347 1zgk_A Kelch-like ECH-associat 69.7 55 0.0019 28.3 24.4 25 409-433 262-291 (308)
348 2uvk_A YJHT; unknown function, 69.5 61 0.0021 28.8 14.8 13 421-433 286-298 (357)
349 3q6k_A 43.2 kDa salivary prote 67.0 74 0.0025 28.8 17.9 73 234-314 220-306 (381)
350 2uvk_A YJHT; unknown function, 66.8 69 0.0024 28.4 22.2 28 407-434 314-347 (357)
351 4gq2_M Nucleoporin NUP120; bet 65.6 42 0.0014 35.0 11.2 34 400-433 237-270 (950)
352 4asc_A Kelch repeat and BTB do 59.1 89 0.003 27.1 22.4 23 293-316 148-176 (315)
353 4fhn_B Nucleoporin NUP120; pro 53.6 27 0.00093 37.3 7.5 33 401-433 240-272 (1139)
354 3f7f_A Nucleoporin NUP120; nuc 53.1 1.2E+02 0.0041 30.1 11.2 39 113-155 222-260 (729)
355 2woz_A Kelch repeat and BTB do 45.5 1.5E+02 0.0051 25.6 22.5 24 292-316 157-186 (318)
356 3b7f_A Glycosyl hydrolase, BNR 44.2 1.8E+02 0.0061 26.2 21.4 70 442-511 177-257 (394)
357 3zwu_A Alkaline phosphatase PH 43.6 73 0.0025 30.9 8.1 59 343-416 477-548 (592)
358 3f7f_A Nucleoporin NUP120; nuc 42.7 97 0.0033 30.8 8.7 27 407-433 228-254 (729)
359 4a9v_A PHOX; hydrolase, beta-p 41.9 1.1E+02 0.0036 29.6 8.6 61 342-417 476-549 (592)
360 3zwu_A Alkaline phosphatase PH 38.5 1E+02 0.0035 29.9 8.2 56 403-459 480-548 (592)
361 3qhy_B Beta-lactamase inhibito 37.9 1.9E+02 0.0065 24.7 22.2 218 235-512 25-242 (282)
362 4a9v_A PHOX; hydrolase, beta-p 37.9 1.2E+02 0.0041 29.2 8.3 58 401-459 478-548 (592)
363 2woz_A Kelch repeat and BTB do 35.2 2.2E+02 0.0074 24.5 17.7 25 409-433 206-235 (318)
364 4fhn_B Nucleoporin NUP120; pro 34.2 25 0.00084 37.6 3.5 36 35-70 237-272 (1139)
365 1zi0_A DNA gyrase subunit A; b 31.7 2.5E+02 0.0087 24.3 19.7 98 409-508 108-217 (307)
366 1wp5_A Topoisomerase IV; broke 29.0 2.9E+02 0.01 24.1 20.7 119 292-428 3-124 (323)
367 3mez_A Mannose-specific lectin 28.4 1.6E+02 0.0053 20.8 5.9 26 345-370 52-77 (111)
368 2zwa_A Leucine carboxyl methyl 28.3 4.5E+02 0.015 26.0 17.8 159 243-431 396-579 (695)
369 2loj_A Putative cytoplasmic pr 21.0 1.6E+02 0.0055 18.3 4.2 40 12-52 23-62 (63)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.5e-50 Score=400.84 Aligned_cols=406 Identities=15% Similarity=0.166 Sum_probs=294.2
Q ss_pred cccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
...+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.. ....+.+|.
T Consensus 54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~---------------------~~~~~~~~~--------- 103 (611)
T 1nr0_A 54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI---------------------LKTTIPVFS--------- 103 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC---------------------EEEEEECSS---------
T ss_pred EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce---------------------eeEeecccC---------
Confidence 34589999999999999999999999999999998654421 345677887
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCC----CeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTND----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
..|.+++| ++++++|++++.+ +.|++||.. +....+..+ ...|. .++|+|++..
T Consensus 104 ---~~v~~v~f--s~dg~~l~~~~~~~~~~~~v~~wd~~--~~~~~l~gh--------~~~v~-------~v~f~p~~~~ 161 (611)
T 1nr0_A 104 ---GPVKDISW--DSESKRIAAVGEGRERFGHVFLFDTG--TSNGNLTGQ--------ARAMN-------SVDFKPSRPF 161 (611)
T ss_dssp ---SCEEEEEE--CTTSCEEEEEECCSSCSEEEEETTTC--CBCBCCCCC--------SSCEE-------EEEECSSSSC
T ss_pred ---CceEEEEE--CCCCCEEEEEECCCCceeEEEEeeCC--CCcceecCC--------CCCce-------EEEECCCCCe
Confidence 88999999 5678899988765 478888743 222222211 34455 8899999874
Q ss_pred -cccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccC
Q 010256 186 -GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 263 (514)
Q Consensus 186 -l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 263 (514)
+ ++++.|++|++|| ... .++... +.+|...|.+++|+|++++|+++ .|++|++||+.+
T Consensus 162 ~l------------~s~s~D~~v~lwd-~~~------~~~~~~-l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~ 221 (611)
T 1nr0_A 162 RI------------ISGSDDNTVAIFE-GPP------FKFKST-FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221 (611)
T ss_dssp EE------------EEEETTSCEEEEE-TTT------BEEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EE------------EEEeCCCeEEEEE-CCC------CeEeee-eccccCceEEEEECCCCCEEEEEECCCcEEEEECCC
Confidence 6 9999999999999 222 223333 37899999999999999999999 999999999986
Q ss_pred CCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccc---------------------
Q 010256 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS--------------------- 322 (514)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~--------------------- 322 (514)
++....+ ........+|...|.+++|+|++ .+|++++.|++|++||+++++......
T Consensus 222 g~~~~~~-~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 299 (611)
T 1nr0_A 222 GTKTGVF-EDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS 299 (611)
T ss_dssp CCEEEEC-BCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEE
T ss_pred CcEeeee-ccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEE
Confidence 6543221 00001122699999999999999 899999999999999999876532100
Q ss_pred -------cceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeee-eecccccccc----
Q 010256 323 -------KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF-QVHEHLRPKL---- 389 (514)
Q Consensus 323 -------~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~-~~~~~~~~~~---- 389 (514)
+.++.. .......+.+|...|.+++|+|+|++|++++. ++|++||+.+ +.....+ ..|...+..+
T Consensus 300 ~s~d~~i~~~~~~-~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~-~~~~~~~~~~h~~~v~~~~~s~ 377 (611)
T 1nr0_A 300 ISANGFINFVNPE-LGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTS 377 (611)
T ss_dssp EETTCCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEEEEEECT
T ss_pred EeCCCcEEEEeCC-CCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-CceeeecccCCcceEEEEEECC
Confidence 001100 00112345689999999999999999999864 9999999986 4433222 1111100000
Q ss_pred ---------------------------------------ccccccC-----------------------CccceeeEEEc
Q 010256 390 ---------------------------------------CDLYEND-----------------------SIFDKFECCLS 407 (514)
Q Consensus 390 ---------------------------------------~~~~~~~-----------------------~~~~v~~~~~s 407 (514)
..+...+ .-..+.+++|+
T Consensus 378 ~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~s 457 (611)
T 1nr0_A 378 KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALS 457 (611)
T ss_dssp TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEEC
T ss_pred CCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEe
Confidence 0000000 01235689999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCc-cc-cc
Q 010256 408 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGN-AF-DF 485 (514)
Q Consensus 408 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~-~~-~~ 485 (514)
|||++|++|+.|+.|++||+.++........+|...|.+++|+|++++|++++.|++|++.+-.... ++... .. .|
T Consensus 458 pdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~~~~~~~H 535 (611)
T 1nr0_A 458 NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHTNSWTFH 535 (611)
T ss_dssp TTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCCCCCCCC
T ss_pred CCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC--ceeeeeeeeec
Confidence 9999999999999999999987633222237899999999999999999999999999994322101 11111 22 38
Q ss_pred ccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 486 SMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 486 ~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
...|.+++|+||+++||+++ ++.+++|.
T Consensus 536 ~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 536 TAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence 99999999999999999988 66789996
No 2
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=9e-50 Score=385.78 Aligned_cols=439 Identities=55% Similarity=0.915 Sum_probs=322.7
Q ss_pred ccccccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccc
Q 010256 11 AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (514)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (514)
...+..|+|.|+|++. .+.++|.+.|++++|+|+|++||+|+.||.|+||++.+++... ....+++
T Consensus 6 ~~~~~~w~~~q~~~~~--~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~------------~~~~~~~ 71 (447)
T 3dw8_B 6 GGNDIQWCFSQVKGAV--DDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQ------------SHSRGEY 71 (447)
T ss_dssp --CCCCCEEEECCSCS--SSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----------------CCCCCCE
T ss_pred CCcceeEEEEEecccc--cccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCC------------cccccce
Confidence 3467899999999974 3468899999999999999999999999999999998765310 0112345
Q ss_pred eeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecc
Q 010256 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (514)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (514)
+....+.+|.+++++++++.+.+.|++++|+|..+..+|++++.|+.|++||+.+++..... .....
T Consensus 72 ~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~~------------ 138 (447)
T 3dw8_B 72 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEG-YNLKE------------ 138 (447)
T ss_dssp EEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEEC-CSCC-------------
T ss_pred eEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcce-ecccC------------
Confidence 56788999999999999999999999999976543369999999999999999877643211 11000
Q ss_pred cccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEE
Q 010256 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 250 (514)
.+|.. ........+.+.. ....+......+.+.+..+|...|.+++|+|++++|++
T Consensus 139 ----------~~g~~-------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 194 (447)
T 3dw8_B 139 ----------EDGRY-------------RDPTTVTTLRVPV-FRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLS 194 (447)
T ss_dssp ------------------------------CCCCCSCCCCE-EEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEE
T ss_pred ----------ccccc-------------cCcccccceEecc-ccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEE
Confidence 00100 0000001111111 11111111223334445789999999999999999999
Q ss_pred ecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 251 ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 251 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
|.|+.|++||+++......++..++..+.+|...|.+++|+|+++++|++|+.||.|++||+++++........+..+..
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 274 (447)
T 3dw8_B 195 ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPED 274 (447)
T ss_dssp ECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC--
T ss_pred eCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCC
Confidence 99999999999866666666666666788899999999999997679999999999999999998865554566776665
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (514)
+.....+.+|...|.+++|+|+|++|++++++.|++||++..++++..+..|......++..+..+.+++++.++|+|++
T Consensus 275 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~ 354 (447)
T 3dw8_B 275 PSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD 354 (447)
T ss_dssp ---CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS
T ss_pred ccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCC
Confidence 55555666777899999999999999998779999999986588899999998777767777777777777789999999
Q ss_pred CEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceE
Q 010256 411 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLL 490 (514)
Q Consensus 411 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~ 490 (514)
++|++|+.||.|++||+.+++. ..++.+..+.......+..+....+.. ..........++...|.
T Consensus 355 ~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 355 SVVMTGSYNNFFRMFDRNTKRD--ITLEASRENNKPRTVLKPRKVCASGKR------------KKDEISVDSLDFNKKIL 420 (447)
T ss_dssp SEEEEECSTTEEEEEETTTCCE--EEEECCSTTCCTTCBCCCCCEECSSCC------------CTTCEEGGGCCTTSCCC
T ss_pred CEEEEeccCCEEEEEEcCCCcc--eeeeecccccccccccCCccccccCCc------------ccccccccccccCCcee
Confidence 9999999999999999998744 366666665543333333332222211 11122233445788999
Q ss_pred EEEEcCCCCEEEEEecCcEEEEeC
Q 010256 491 HLAWHPSENSIACAASNSLYMYYA 514 (514)
Q Consensus 491 ~~~~spd~~~l~~~~~~~~~i~~~ 514 (514)
+++|+|++++||+++.+++++|++
T Consensus 421 ~~~~~p~~~~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTNNLYIFQD 444 (447)
T ss_dssp EEEECSSSSEEEEECSSCEEEEEC
T ss_pred EEEECCCCCEEEEEecceeeeecc
Confidence 999999999999999999999985
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.4e-46 Score=376.20 Aligned_cols=395 Identities=15% Similarity=0.203 Sum_probs=291.1
Q ss_pred ccccccceEEEEEcCCCC-eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 31 EVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
..+|.+.|++++|+|++. +|++|+.|++|++||..+.+ ....+.+|.
T Consensus 143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-----------------------~~~~l~~H~--------- 190 (611)
T 1nr0_A 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-----------------------FKSTFGEHT--------- 190 (611)
T ss_dssp CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-----------------------EEEEECCCS---------
T ss_pred ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-----------------------Eeeeecccc---------
Confidence 458999999999999987 59999999999999976443 456788998
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.+++| ++++++|++++.|++|++||+.+++....+.... .......+.|. .++|+|+|+.+
T Consensus 191 ---~~V~~v~f--spdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~-~~~~~h~~~V~-------~v~~spdg~~l--- 254 (611)
T 1nr0_A 191 ---KFVHSVRY--NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS-LKNVAHSGSVF-------GLTWSPDGTKI--- 254 (611)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT-SSSCSSSSCEE-------EEEECTTSSEE---
T ss_pred ---CceEEEEE--CCCCCEEEEEECCCcEEEEECCCCcEeeeecccc-ccccccCCCEE-------EEEECCCCCEE---
Confidence 88999999 5678899999999999999999887665542110 00001234555 89999999998
Q ss_pred cCCCCCCcccCCCCCCcEEeceeecccccccc-------------------------------------ccccccccccC
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLV-------------------------------------AGCRRIYAHAH 232 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~-------------------------------------~~~~~~~~~~h 232 (514)
++++.|++|++|| +...+.... ..+.. .+.+|
T Consensus 255 ---------~s~s~D~~v~lWd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~-~~~gh 323 (611)
T 1nr0_A 255 ---------ASASADKTIKIWN-VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQ-VRYGH 323 (611)
T ss_dssp ---------EEEETTSEEEEEE-TTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEE-EECCC
T ss_pred ---------EEEeCCCeEEEEe-CCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcce-EEcCC
Confidence 9999999999999 432211000 00111 23689
Q ss_pred ccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 233 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
...|.+++|+|++++|+++ .|++|++||+.++.... . ...+|...|.+++|++++ .+++++.|+.+++|+
T Consensus 324 ~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~-~------~~~~h~~~v~~~~~s~~~--~l~s~s~d~~v~~w~ 394 (611)
T 1nr0_A 324 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNR-V------FPDVHATMITGIKTTSKG--DLFTVSWDDHLKVVP 394 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-C------SSCSCSSCEEEEEECTTS--CEEEEETTTEEEEEC
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee-e------cccCCcceEEEEEECCCC--cEEEEEcCCceEEee
Confidence 9999999999999999999 99999999998654332 1 125688999999999875 688999999999999
Q ss_pred cCCCccccccc---------cceeccCC----------------CCccceeeccccceeEEEEecCCCEEEEEeC-CeEE
Q 010256 312 MRQSALCDTHS---------KLFEEQEA----------------PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLK 365 (514)
Q Consensus 312 ~~~~~~~~~~~---------~~~~~~~~----------------~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~ 365 (514)
+..+....... ..+..... ......+ .|...+.+++|+|+|++|++|+. ++|+
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~ 473 (611)
T 1nr0_A 395 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVH 473 (611)
T ss_dssp SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred cCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEE
Confidence 87654221000 00000000 0000111 25567899999999999999865 9999
Q ss_pred EEEccCCCCc--eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee--ecCCC
Q 010256 366 LWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTT--LEASK 441 (514)
Q Consensus 366 iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~ 441 (514)
+||+.. +.. +.. ..|... |.+++|+|||++|++++.|+.|++|++.+....... +.+|.
T Consensus 474 lwd~~~-~~~~~~~~-~~h~~~---------------v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~ 536 (611)
T 1nr0_A 474 VYKLSG-ASVSEVKT-IVHPAE---------------ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHT 536 (611)
T ss_dssp EEEEET-TEEEEEEE-EECSSC---------------EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCS
T ss_pred EEEccC-Cceeeeec-cCCCCc---------------eEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecc
Confidence 999985 322 122 344433 459999999999999999999999999873233332 44599
Q ss_pred cceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccC-Cccccc-ccceEEEEEcCCCCEEEEEe-cCcEEEEeC
Q 010256 442 NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDAN-GNAFDF-SMKLLHLAWHPSENSIACAA-SNSLYMYYA 514 (514)
Q Consensus 442 ~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~-~~~~~~-~~~v~~~~~spd~~~l~~~~-~~~~~i~~~ 514 (514)
..|.+++|+|++++|++++.|++|++.+-.... ... .....| ...|.+++|+||++ |++++ ++.+.+|..
T Consensus 537 ~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~--~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 537 AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS--DHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTCTT--SCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred cceeEEEECCCCCEEEEEECCCcEEEEECCCcc--cccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 999999999999999999999999994332211 011 122357 78999999999999 77666 778899973
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-45 Score=368.78 Aligned_cols=358 Identities=18% Similarity=0.295 Sum_probs=292.0
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
...|...|.+++|+|++++|++++.|+.|++|+... + ....+.+|.
T Consensus 217 ~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~-----------------------~~~~~~~~~---------- 262 (577)
T 2ymu_A 217 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-----------------------LLQTLTGHS---------- 262 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-C-----------------------EEEEECCCS----------
T ss_pred EecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC-C-----------------------EEEEEecCC----------
Confidence 347899999999999999999999999999999532 2 345677887
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|++++| .+++..+++++.|+.|++|+..... ......+ .+.+. .++++|+++.+
T Consensus 263 --~~v~~v~~--~~d~~~l~~~~~d~~i~~w~~~~~~-~~~~~~h--------~~~v~-------~~~~~~~~~~l---- 318 (577)
T 2ymu_A 263 --SSVNGVAF--RPDGQTIASASDDKTVKLWNRNGQL-LQTLTGH--------SSSVW-------GVAFSPDGQTI---- 318 (577)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSCE-EEEECCC--------SSCEE-------EEEECTTSSEE----
T ss_pred --CCEEEEEE--cCCCCEEEEEeCCCEEEEEeCCCcE-EEEEecC--------CCCeE-------EEEECCCCCEE----
Confidence 88999999 5678899999999999999976543 3333322 23444 78999999998
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
++++.++.+++|+ ....+ ... +.+|...|.+++|+|++++|+++ .|+.|++||.. ++.. .
T Consensus 319 --------~t~~~d~~i~~w~-~~~~~-------~~~-~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~-~ 379 (577)
T 2ymu_A 319 --------ASASDDKTVKLWN-RNGQH-------LQT-LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLL-Q 379 (577)
T ss_dssp --------EEEETTSCEEEEE-TTSCE-------EEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEE-E
T ss_pred --------EEEeCCCeEEEEe-CCCCe-------eEE-EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEE-E
Confidence 9999999999999 32211 122 36889999999999999999999 99999999965 3322 2
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+.+|...|.+++|+|++ ++|++++.|+.|++||.. ++. .. .+.+|...|.+++|
T Consensus 380 -------~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~-~~~----~~------------~~~~~~~~v~~~~~ 434 (577)
T 2ymu_A 380 -------TLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQL----LQ------------TLTGHSSSVWGVAF 434 (577)
T ss_dssp -------EEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT-CCE----EE------------EEECCSSCEEEEEE
T ss_pred -------EecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCC-CCE----EE------------EecCCCCCeEEEEE
Confidence 456789999999999999 899999999999999964 332 12 24556789999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+|++++|++++. +.|++||.. ++.+..+..|... |.+++|+||+++|++++.|+.|++||..
T Consensus 435 s~d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~---------------v~~~~~spd~~~las~~~d~~i~iw~~~ 497 (577)
T 2ymu_A 435 SPDDQTIASASDDKTVKLWNRN--GQLLQTLTGHSSS---------------VRGVAFSPDGQTIASASDDKTVKLWNRN 497 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEETT--SCEEEEEECCSSC---------------EEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred CCCCCEEEEEcCCCEEEEEECC--CCEEEEEcCCCCC---------------EEEEEEcCCCCEEEEEeCCCEEEEEcCC
Confidence 999999999765 999999975 6778888877654 4489999999999999999999999964
Q ss_pred CCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cC
Q 010256 429 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SN 507 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~ 507 (514)
+ .....+.+|..+|.+++|+|++++|++++.|+.|++++ ... +.......|.+.|++++|+||+++|++++ +.
T Consensus 498 -~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd---~~~-~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~ 571 (577)
T 2ymu_A 498 -G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN---RNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASSDK 571 (577)
T ss_dssp -S-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC---TTS-CEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred -C-CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe---CCC-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 4 45578999999999999999999999999999999943 211 22233456999999999999999999888 55
Q ss_pred cEEEEe
Q 010256 508 SLYMYY 513 (514)
Q Consensus 508 ~~~i~~ 513 (514)
.+++|+
T Consensus 572 ~i~~Wd 577 (577)
T 2ymu_A 572 TVKLWN 577 (577)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 688885
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.2e-45 Score=365.70 Aligned_cols=370 Identities=17% Similarity=0.282 Sum_probs=283.1
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|+|++|||||++||+|+.|+.|+|||. +++ .+..+.+|.
T Consensus 12 L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~-----------------------~~~~l~gh~---------- 57 (577)
T 2ymu_A 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ-----------------------LLQTLTGHS---------- 57 (577)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSC-----------------------EEEEEECCS----------
T ss_pred ECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCC-----------------------EEEEEeCCC----------
Confidence 3489999999999999999999999999999995 333 446788998
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc----
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG---- 186 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l---- 186 (514)
..|.+++| ++++++|++++.|++|++||+... .......+. +.|. .++|+|+++.+
T Consensus 58 --~~V~~l~f--spdg~~las~~~d~~i~vWd~~~~-~~~~~~~~~--------~~v~-------~~~~s~d~~~l~~~~ 117 (577)
T 2ymu_A 58 --SSVWGVAF--SPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHS--------SSVR-------GVAFSPDGQTIASAS 117 (577)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSC-EEEEECCCS--------SCEE-------EEEECTTSSEEEEEE
T ss_pred --CCEEEEEE--CCCCCEEEEEeCCCEEEEEECCCC-EEEEEECCC--------CCEE-------EEEECCCCCEEEEEc
Confidence 88999999 568889999999999999997543 333332221 1111 22222222221
Q ss_pred -------------------------------------ccc-----------------------------cCCCCCCcccC
Q 010256 187 -------------------------------------ERN-----------------------------FGCASNDSSFP 200 (514)
Q Consensus 187 -------------------------------------~~~-----------------------------~~~~~~~~~~~ 200 (514)
... .......++++
T Consensus 118 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 197 (577)
T 2ymu_A 118 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 197 (577)
T ss_dssp TTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred CCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEE
Confidence 000 00111234478
Q ss_pred CCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCccc
Q 010256 201 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 279 (514)
Q Consensus 201 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 279 (514)
++.++.|++|+ ... +.... +.+|...|.+++|+|++++|+++ .|+.|++||.. .+. .. .+.
T Consensus 198 ~~~d~~v~~w~-~~~-------~~~~~-~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~-~~-------~~~ 259 (577)
T 2ymu_A 198 ASDDKTVKLWN-RNG-------QLLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQL-LQ-------TLT 259 (577)
T ss_dssp EETTSEEEEEC-TTS-------CEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCE-EE-------EEC
T ss_pred EcCCCEEEEEe-CCC-------cEEEE-EecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCE-EE-------EEe
Confidence 88888999888 211 12222 36899999999999999999999 99999999975 332 22 456
Q ss_pred ccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE
Q 010256 280 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 359 (514)
Q Consensus 280 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 359 (514)
+|...|.+++|+|++ ..+++++.|+.|++||... +. .. .+.+|...|.+++|+|++++|+++
T Consensus 260 ~~~~~v~~v~~~~d~-~~l~~~~~d~~i~~w~~~~-~~----~~------------~~~~h~~~v~~~~~~~~~~~l~t~ 321 (577)
T 2ymu_A 260 GHSSSVNGVAFRPDG-QTIASASDDKTVKLWNRNG-QL----LQ------------TLTGHSSSVWGVAFSPDGQTIASA 321 (577)
T ss_dssp CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTS-CE----EE------------EECCCSSCEEEEEECTTSSEEEEE
T ss_pred cCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEeCCC-cE----EE------------EEecCCCCeEEEEECCCCCEEEEE
Confidence 789999999999999 8999999999999999653 22 11 245677899999999999999997
Q ss_pred eC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec
Q 010256 360 DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE 438 (514)
Q Consensus 360 ~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 438 (514)
+. +.|++||+. +..+..+..|... +.+++|+|++++|++++.|+.|++||.. + .....+.
T Consensus 322 ~~d~~i~~w~~~--~~~~~~~~~~~~~---------------v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~-~~~~~~~ 382 (577)
T 2ymu_A 322 SDDKTVKLWNRN--GQHLQTLTGHSSS---------------VWGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLT 382 (577)
T ss_dssp ETTSCEEEEETT--SCEEEEECCCSSC---------------EEEEEECTTSSEEEEEETTSEEEEEETT-C-CEEEEEE
T ss_pred eCCCeEEEEeCC--CCeeEEEeCCCCC---------------EEEEEECCCCCEEEEEeCCCEEEEEcCC-C-CEEEEec
Confidence 65 999999986 5566666666543 4489999999999999999999999965 3 4557889
Q ss_pred CCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEec-CcEEEEe
Q 010256 439 ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-NSLYMYY 513 (514)
Q Consensus 439 ~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~-~~~~i~~ 513 (514)
+|..+|.+++|+|++++|++++.|+.|++++.. .........|...|++++|+||+++|++++. +.+.+|+
T Consensus 383 ~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~----~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~ 454 (577)
T 2ymu_A 383 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT----CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC----CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 999999999999999999999999999994321 1222234468999999999999999998884 5577775
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-43 Score=325.62 Aligned_cols=283 Identities=14% Similarity=0.225 Sum_probs=239.9
Q ss_pred ccccccceEEEEEcCC----CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccc
Q 010256 31 EVQEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~----g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (514)
..+|.+.|++++|+|+ +++|++|+.|++|+||++.+++.. ....+.+|.
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~---------------------~~~~l~gh~------ 80 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD---------------------LQWSLEGHQ------ 80 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE---------------------EEEEECCCS------
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee---------------------eeeeeccCC------
Confidence 3489999999999985 679999999999999998765421 345678898
Q ss_pred cccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 107 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
..|.+++| ++++.++++++.|++|++||+.+++.....
T Consensus 81 ------~~v~~~~~--~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~---------------------------------- 118 (321)
T 3ow8_A 81 ------LGVVSVDI--SHTLPIAASSSLDAHIRLWDLENGKQIKSI---------------------------------- 118 (321)
T ss_dssp ------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEEE----------------------------------
T ss_pred ------CCEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCCEEEEE----------------------------------
Confidence 88999999 566779999999999999999987643321
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCC
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~ 265 (514)
..|...+.+++|+|++++|+++ .|+.|++|++++++
T Consensus 119 -------------------------------------------~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~ 155 (321)
T 3ow8_A 119 -------------------------------------------DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK 155 (321)
T ss_dssp -------------------------------------------ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS
T ss_pred -------------------------------------------eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc
Confidence 2334567789999999999999 99999999999776
Q ss_pred ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccccee
Q 010256 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (514)
... .+..+...+.+++|+|++ ++|++|+.|+.|++||+++++.. .. +.+|..+|.
T Consensus 156 ~~~--------~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~----~~------------~~~h~~~v~ 210 (321)
T 3ow8_A 156 KEY--------SLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLL----HT------------LEGHAMPIR 210 (321)
T ss_dssp EEE--------EEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EE------------ECCCSSCCC
T ss_pred eeE--------EecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEE----EE------------EcccCCcee
Confidence 543 345677889999999999 89999999999999999987652 22 445668899
Q ss_pred EEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEE
Q 010256 346 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (514)
Q Consensus 346 ~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 424 (514)
+++|+|++++|++++. +.|++||++. ++.+..+.+|... |.+++|+|++++|++++.|+.|++
T Consensus 211 ~l~~spd~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~~~~sp~~~~l~s~s~D~~v~i 274 (321)
T 3ow8_A 211 SLTFSPDSQLLVTASDDGYIKIYDVQH-ANLAGTLSGHASW---------------VLNVAFCPDDTHFVSSSSDKSVKV 274 (321)
T ss_dssp EEEECTTSCEEEEECTTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEECCC-cceeEEEcCCCCc---------------eEEEEECCCCCEEEEEeCCCcEEE
Confidence 9999999999999875 9999999997 7888888888765 448999999999999999999999
Q ss_pred EecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 425 FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 425 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
||+.+++ ...++.+|...|.+++|+|++++|++++.|+.|++
T Consensus 275 wd~~~~~-~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~v 316 (321)
T 3ow8_A 275 WDVGTRT-CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHI 316 (321)
T ss_dssp EETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred EeCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 9999874 45788999999999999999999999999999999
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.9e-44 Score=338.23 Aligned_cols=281 Identities=17% Similarity=0.265 Sum_probs=244.6
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|++++|++|+.||.|+|||+.+++ ....+.+|.
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-----------------------~~~~l~~h~---------- 150 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-----------------------FERTLKGHT---------- 150 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-----------------------CCEEECCCS----------
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------------------EEEEEeccC----------
Confidence 45899999999999999999999999999999998776 336788898
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|.+++| ++++.+|++|+.|++|++||+.+++...
T Consensus 151 --~~V~~v~~--~~~~~~l~sgs~D~~i~iwd~~~~~~~~---------------------------------------- 186 (410)
T 1vyh_C 151 --DSVQDISF--DHSGKLLASCSADMTIKLWDFQGFECIR---------------------------------------- 186 (410)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSCCCEEETTSSCEEE----------------------------------------
T ss_pred --CcEEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCceeE----------------------------------------
Confidence 88999999 5677899999999999999997654221
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
. +.+|...|.+++|+|++++|++| .|++|++||++++....
T Consensus 187 ------------------------------------~-~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~- 228 (410)
T 1vyh_C 187 ------------------------------------T-MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK- 228 (410)
T ss_dssp ------------------------------------C-CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-
T ss_pred ------------------------------------E-EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-
Confidence 1 25788899999999999999999 99999999998765432
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+.+|...|.++.|+|++ .+|++|+.|+.|++||++++... . .+.+|...|.+++|
T Consensus 229 -------~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~----~------------~~~~h~~~v~~~~~ 284 (410)
T 1vyh_C 229 -------TFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECK----A------------ELREHRHVVECISW 284 (410)
T ss_dssp -------EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----E------------EECCCSSCEEEEEE
T ss_pred -------EEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcee----e------------EecCCCceEEEEEE
Confidence 456789999999999999 89999999999999999887642 1 24556688999999
Q ss_pred ecC--------------------CCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC
Q 010256 350 ARN--------------------GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (514)
Q Consensus 350 s~~--------------------g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (514)
+|+ |.+|++|+. +.|++||+++ +.++..+.+|... |.+++|+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~---------------v~~v~~~~ 348 (410)
T 1vyh_C 285 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNW---------------VRGVLFHS 348 (410)
T ss_dssp CCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSC---------------EEEEEECS
T ss_pred cCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC-CceEEEEECCCCc---------------EEEEEEcC
Confidence 996 678998765 9999999997 8888888888765 34899999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 409 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 409 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+|++|++|+.||.|++||+.+++ ...++.+|...|.+++|+|++++|++|+.|++|++
T Consensus 349 ~g~~l~s~s~D~~i~vwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~v 406 (410)
T 1vyh_C 349 GGKFILSCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406 (410)
T ss_dssp SSSCEEEEETTTEEEEECCTTSC-CCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCc-eEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 99999999999999999998774 44788999999999999999999999999999999
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.7e-43 Score=318.60 Aligned_cols=284 Identities=17% Similarity=0.201 Sum_probs=238.3
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|+|++|++|+.||.|++||+.+++ ....+..|.
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-----------------------~~~~~~~~~---------- 55 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-----------------------EVRSIQVTE---------- 55 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----------------------EEEEEECCS----------
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----------------------eeEEeeccC----------
Confidence 45899999999999999999999999999999998765 345677887
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++|+ +++++|++++.|++|++||+.+++....
T Consensus 56 --~~v~~~~~~--~~~~~l~s~s~d~~i~vwd~~~~~~~~~--------------------------------------- 92 (304)
T 2ynn_A 56 --TPVRAGKFI--ARKNWIIVGSDDFRIRVFNYNTGEKVVD--------------------------------------- 92 (304)
T ss_dssp --SCEEEEEEE--GGGTEEEEEETTSEEEEEETTTCCEEEE---------------------------------------
T ss_pred --CcEEEEEEe--CCCCEEEEECCCCEEEEEECCCCcEEEE---------------------------------------
Confidence 889999995 5667999999999999999987753221
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+.+|...|.+++|+|++++|++| .|++|++||+++......
T Consensus 93 --------------------------------------~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~ 134 (304)
T 2ynn_A 93 --------------------------------------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ 134 (304)
T ss_dssp --------------------------------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE
T ss_pred --------------------------------------EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh
Confidence 25788899999999999999999 999999999986644432
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+.+|...|.+++|+|+++.+|++|+.|+.|++||++++... ..+ ..+|...+..+.|
T Consensus 135 -------~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~----~~~-----------~~~~~~~v~~~~~ 192 (304)
T 2ynn_A 135 -------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN----FTL-----------TTGQERGVNYVDY 192 (304)
T ss_dssp -------EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS----EEE-----------ECCCTTCEEEEEE
T ss_pred -------hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc----cee-----------ccCCcCcEEEEEE
Confidence 467899999999999954489999999999999999876532 111 1234467899999
Q ss_pred ec--CCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEe
Q 010256 350 AR--NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (514)
Q Consensus 350 s~--~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 426 (514)
+| ++.+|++++. ++|++||+++ ++++.++.+|... |.+++|+|++++|++|+.||.|++||
T Consensus 193 ~~~~~~~~l~s~s~D~~i~iWd~~~-~~~~~~~~~h~~~---------------v~~~~~~p~~~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 193 YPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSN---------------VSFAVFHPTLPIIISGSEDGTLKIWN 256 (304)
T ss_dssp CCSTTCCEEEEEETTSEEEEEETTT-TEEEEEEECCSSC---------------EEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred EEcCCCCEEEEEcCCCeEEEEeCCC-CccceeeCCCCCC---------------EEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 87 7789999865 9999999997 8888999888765 34899999999999999999999999
Q ss_pred cCCCceeeeeecCCCcceeEEEECCCCC--ceeecCCCCeEEE
Q 010256 427 CSEGSAESTTLEASKNPMRRQVQTPSRP--SRPLGSLSGVVRR 467 (514)
Q Consensus 427 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~v~i 467 (514)
+.+++ ...++..|...+.+++++|+++ ++++|+.||.+.+
T Consensus 257 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~ 298 (304)
T 2ynn_A 257 SSTYK-VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298 (304)
T ss_dssp TTTCC-EEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEE
T ss_pred CCCCc-eeeeccCCCccEEEEEECCCCCceEEEEecCCceEEE
Confidence 99874 4578899999999999999875 5888888887766
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.3e-43 Score=322.99 Aligned_cols=286 Identities=15% Similarity=0.215 Sum_probs=236.4
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|++++|++|+.||.|+|||+.+++ ....+..|.
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-----------------------~~~~~~~~~---------- 97 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-----------------------KVHAIPLRS---------- 97 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-----------------------EEEEEECSS----------
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-----------------------cceEeecCC----------
Confidence 45899999999999999999999999999999987665 335567777
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++| ++++.++++++.|+.|++|++.+++...
T Consensus 98 --~~v~~~~~--s~~~~~l~s~~~d~~v~iw~~~~~~~~~---------------------------------------- 133 (340)
T 1got_B 98 --SWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGNV---------------------------------------- 133 (340)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTCSBSC----------------------------------------
T ss_pred --ccEEEEEE--CCCCCEEEEEeCCCeEEEEECccCCCcc----------------------------------------
Confidence 78999999 5677899999999999999987642000
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+ .... +.+|.+.|.++.|++++. ++++ .|++|++||+++++...
T Consensus 134 -----------------~---------------~~~~-~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~- 178 (340)
T 1got_B 134 -----------------R---------------VSRE-LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTT- 178 (340)
T ss_dssp -----------------E---------------EEEE-EECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEE-
T ss_pred -----------------e---------------eEEE-ecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEE-
Confidence 0 0001 267889999999998886 5666 99999999998665442
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+.+|...|.+++|+|++ .+|++|+.|+.|++||++++... . .+.+|...|.+++|
T Consensus 179 -------~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~----~------------~~~~h~~~v~~v~~ 234 (340)
T 1got_B 179 -------TFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR----Q------------TFTGHESDINAICF 234 (340)
T ss_dssp -------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEE----E------------EECCCSSCEEEEEE
T ss_pred -------EEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeE----E------------EEcCCcCCEEEEEE
Confidence 457799999999999998 89999999999999999887642 2 24556689999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+|++++|++|+. ++|++||++. ++.+..+..+.. ...|.+++|+|+|++|++|+.||.|++||+.
T Consensus 235 ~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~~~~-------------~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~ 300 (340)
T 1got_B 235 FPNGNAFATGSDDATCRLFDLRA-DQELMTYSHDNI-------------ICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp CTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTC-------------CSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cCCCCEEEEEcCCCcEEEEECCC-CcEEEEEccCCc-------------ccceEEEEECCCCCEEEEECCCCeEEEEEcc
Confidence 999999999865 9999999986 555555432211 1125589999999999999999999999998
Q ss_pred CCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 429 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
++. ....+.+|..+|.+++|+|++++|++|+.|++|++
T Consensus 301 ~~~-~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~i 338 (340)
T 1got_B 301 KAD-RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338 (340)
T ss_dssp TCC-EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred cCc-EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEe
Confidence 874 44788999999999999999999999999999998
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-43 Score=363.08 Aligned_cols=403 Identities=12% Similarity=0.101 Sum_probs=279.0
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|++++||+|+.||.|+||+..+.+. ... ..|.
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~-----------------------~~~-~~~~---------- 58 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV-----------------------VIK-LEDR---------- 58 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE-----------------------EEE-CSSC----------
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE-----------------------EEE-cCCC----------
Confidence 358999999999999999999999999999999765432 112 2344
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++|+| +++|++++.|++|++||+.+++.......+ +.|. +++|+|+++.+
T Consensus 59 --~~V~~l~fsp---g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~---------~~V~-------~v~~sp~g~~l---- 113 (902)
T 2oaj_A 59 --SAIKEMRFVK---GIYLVVINAKDTVYVLSLYSQKVLTTVFVP---------GKIT-------SIDTDASLDWM---- 113 (902)
T ss_dssp --CCEEEEEEET---TTEEEEEETTCEEEEEETTTCSEEEEEECS---------SCEE-------EEECCTTCSEE----
T ss_pred --CCEEEEEEcC---CCEEEEEECcCeEEEEECCCCcEEEEEcCC---------CCEE-------EEEECCCCCEE----
Confidence 7799999975 569999999999999999998766555422 3344 88999999998
Q ss_pred CCCCCCcccCCCCCCcEEeceeecccccccccc-cc--c-cccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCC
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAG-CR--R-IYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~-~~--~-~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~ 264 (514)
++++.||.|++|| +.......... .. . ....+|.+.|.+++|+|+ +..|++| .|+.| +||+++.
T Consensus 114 --------~sgs~dg~V~lwd-~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~ 183 (902)
T 2oaj_A 114 --------LIGLQNGSMIVYD-IDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVEN 183 (902)
T ss_dssp --------EEEETTSCEEEEE-TTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTT
T ss_pred --------EEEcCCCcEEEEE-CCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCC
Confidence 9999999999999 43322110000 00 0 123689999999999996 5688888 99999 9999865
Q ss_pred CceeeeeccC-----C------CcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccc-------------
Q 010256 265 NQSFNIVDVK-----P------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT------------- 320 (514)
Q Consensus 265 ~~~~~~~~~~-----~------~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~------------- 320 (514)
+....+ ... + .....|...|.+++|+|++ .+|++|+.||.|++||+++++....
T Consensus 184 ~~~~~~-~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~ 261 (902)
T 2oaj_A 184 EIKQSF-IYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQP 261 (902)
T ss_dssp EEEEEE-CCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCT
T ss_pred ceEEEE-ecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCC
Confidence 443222 111 0 0123456789999999998 8999999999999999977653210
Q ss_pred -----------ccc-------------------------------cee-cc-----------------------------
Q 010256 321 -----------HSK-------------------------------LFE-EQ----------------------------- 328 (514)
Q Consensus 321 -----------~~~-------------------------------~~~-~~----------------------------- 328 (514)
.+. .+. .+
T Consensus 262 ~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 341 (902)
T 2oaj_A 262 DYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPT 341 (902)
T ss_dssp TCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSS
T ss_pred cCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCC
Confidence 000 000 00
Q ss_pred --------------------CCC---------Cccc------------------eeeccccceeE---------------
Q 010256 329 --------------------EAP---------GTRS------------------FFTEIIASISD--------------- 346 (514)
Q Consensus 329 --------------------~~~---------~~~~------------------~~~~~~~~i~~--------------- 346 (514)
..+ .... .+..|...|++
T Consensus 342 ~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~ 421 (902)
T 2oaj_A 342 NVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGAL 421 (902)
T ss_dssp SSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHH
T ss_pred CCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHH
Confidence 000 0000 00011123333
Q ss_pred -------------------EEEecCCCEEEEEe-CCeEEEEEccCCCCce--eeeeeccccccccccccccCCccceeeE
Q 010256 347 -------------------IKFARNGRHILSRD-YMTLKLWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (514)
Q Consensus 347 -------------------~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (514)
++|+|++++|++|+ |++|++||+.. +... ..+...- ...+ ....-..|.++
T Consensus 422 ~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~-g~~~~~~~~~~~l--~~~~----~~~h~~~V~sv 494 (902)
T 2oaj_A 422 SAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASH-GDIQDNASFEVNL--SRTL----NKAKELAVDKI 494 (902)
T ss_dssp HTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSC-CTTTTTBCEEEEH--HHHT----TCSSSCCEEEE
T ss_pred hcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCC-ccccCCceEEeec--hhhc----CCCCCCceeEE
Confidence 44568899999986 49999999986 4321 1111000 0000 00111235699
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCc--------------------------------------------eeeeeecCC
Q 010256 405 CLSGDGGRVATGSYSNLFRVFGCSEGS--------------------------------------------AESTTLEAS 440 (514)
Q Consensus 405 ~~s~~~~~l~s~~~dg~i~iwd~~~~~--------------------------------------------~~~~~~~~~ 440 (514)
+|+|||++||+|+.||+|+|||+.+++ ....++.+|
T Consensus 495 afspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h 574 (902)
T 2oaj_A 495 SFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN 574 (902)
T ss_dssp EEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC
T ss_pred EecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcC
Confidence 999999999999999999999997652 124678899
Q ss_pred CcceeEEEECCCCCceeecCCCCeEEEeeCCCCCcc---ccCCccc-ccccceEEEEEc-----CCC---CEEEEEe-cC
Q 010256 441 KNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL---DANGNAF-DFSMKLLHLAWH-----PSE---NSIACAA-SN 507 (514)
Q Consensus 441 ~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~---~~~~~~~-~~~~~v~~~~~s-----pd~---~~l~~~~-~~ 507 (514)
..+|++++|+|+| +||+|+.|++|++++-...... .+ .... .|...|++++|+ ||| ++|++++ ++
T Consensus 575 ~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~-~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~ 652 (902)
T 2oaj_A 575 KGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENI-REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMG 652 (902)
T ss_dssp SCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEG-GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTS
T ss_pred CCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeeh-hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCC
Confidence 9999999999999 9999999999999543221100 01 1222 588899999999 886 8999888 56
Q ss_pred cEEEEe
Q 010256 508 SLYMYY 513 (514)
Q Consensus 508 ~~~i~~ 513 (514)
.+++|.
T Consensus 653 tv~~wd 658 (902)
T 2oaj_A 653 EVITYK 658 (902)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 788885
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.7e-43 Score=323.17 Aligned_cols=310 Identities=15% Similarity=0.140 Sum_probs=225.9
Q ss_pred cccccccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCcc
Q 010256 10 AAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE 89 (514)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (514)
.|...+.|.+... ....|...|.+++|+|||++|++++ |+++++||.......... ..|.
T Consensus 12 ~p~~~r~w~~~~~-------~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~------------~~~~ 71 (344)
T 4gqb_B 12 VPPAAREWNLPPN-------APACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPC------------AAPN 71 (344)
T ss_dssp -----------CC-------SCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGG------------GTTC
T ss_pred CCccccccCCCCC-------CcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecccc------------ccCC
Confidence 3444566765431 1235778899999999999999887 778888874321100000 0000
Q ss_pred ceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceec
Q 010256 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (514)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (514)
.........| +..|.+++|+| + ..|++++.||+|+|||+.+++.......
T Consensus 72 ~~~~~~~~~~------------~~~v~~~~~s~--d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~--------------- 121 (344)
T 4gqb_B 72 EGFCSAGVQT------------EAGVADLTWVG--E-RGILVASDSGAVELWELDENETLIVSKF--------------- 121 (344)
T ss_dssp GGGCSEEEEE------------SSCEEEEEEET--T-TEEEEEETTSEEEEEEECTTSSCEEEEE---------------
T ss_pred cceeeeeecc------------CCCEEEEEEeC--C-CeEEEEECCCEEEEEeccCCCceeEeec---------------
Confidence 0011111122 37799999964 4 3788999999999999987652221110
Q ss_pred ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE
Q 010256 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 249 (514)
...+|...|++++|+|++++|+
T Consensus 122 ----------------------------------------------------------~~~~H~~~V~~v~~spdg~~l~ 143 (344)
T 4gqb_B 122 ----------------------------------------------------------CKYEHDDIVSTVSVLSSGTQAV 143 (344)
T ss_dssp ----------------------------------------------------------EEECCSSCEEEEEECTTSSEEE
T ss_pred ----------------------------------------------------------cccCCCCCEEEEEECCCCCEEE
Confidence 1258999999999999999999
Q ss_pred Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceecc
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 328 (514)
+| .|++|++||+++++... .+.+|...|.+++|+|++..+|++++.|+.|++||+++++.. ..+..
T Consensus 144 sgs~d~~i~iwd~~~~~~~~--------~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~----~~~~~- 210 (344)
T 4gqb_B 144 SGSKDICIKVWDLAQQVVLS--------SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA----SQIGC- 210 (344)
T ss_dssp EEETTSCEEEEETTTTEEEE--------EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE----EECC--
T ss_pred EEeCCCeEEEEECCCCcEEE--------EEcCcCCceEEEEecCCCCCceeeecccccccccccccccee----eeeec-
Confidence 99 99999999999665442 567899999999999998678999999999999999987753 22211
Q ss_pred CCCCccceeeccccceeEEEEecC-CCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE
Q 010256 329 EAPGTRSFFTEIIASISDIKFARN-GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (514)
..|...+.+++|+|+ +++|++|+ |++|++||+++ ++++.++.+|... |.+++|
T Consensus 211 ---------~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~-~~~~~~~~~h~~~---------------v~~v~f 265 (344)
T 4gqb_B 211 ---------SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS-TSCVLSSAVHSQC---------------VTGLVF 265 (344)
T ss_dssp ------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSC---------------EEEEEE
T ss_pred ---------ceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-CcEEEEEcCCCCC---------------EEEEEE
Confidence 223357899999995 56788876 49999999997 8899999988765 449999
Q ss_pred cCCC-CEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCc-eeecCCCCeEEE
Q 010256 407 SGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS-RPLGSLSGVVRR 467 (514)
Q Consensus 407 s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~s~d~~v~i 467 (514)
+|++ ++|++|+.|+.|+|||+.+++ ...+.+|...|++++|+|+++. |+++|.|++|++
T Consensus 266 sp~g~~~lasgs~D~~i~vwd~~~~~--~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 266 SPHSVPFLASLSEDCSLAVLDSSLSE--LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTCCE--EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred ccCCCeEEEEEeCCCeEEEEECCCCc--EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence 9998 589999999999999998773 3567899999999999999875 679999999999
No 12
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.2e-41 Score=316.87 Aligned_cols=290 Identities=14% Similarity=0.202 Sum_probs=237.0
Q ss_pred cccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
...+|.+.|++++|+|++++||+|+.||+|+|||..+++ ....+..|.
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~-----------------------~~~~~~~~~--------- 106 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN-----------------------KEHAVTMPC--------- 106 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------------------EEEEEECSS---------
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-----------------------cceEEecCC---------
Confidence 346899999999999999999999999999999987655 234556666
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.+++| ++++.++++++.|+.+++|++.......
T Consensus 107 ---~~v~~~~~--sp~g~~lasg~~d~~i~v~~~~~~~~~~--------------------------------------- 142 (354)
T 2pbi_B 107 ---TWVMACAY--APSGCAIACGGLDNKCSVYPLTFDKNEN--------------------------------------- 142 (354)
T ss_dssp ---SCCCEEEE--CTTSSEEEEESTTSEEEEEECCCCTTCC---------------------------------------
T ss_pred ---CCEEEEEE--CCCCCEEEEeeCCCCEEEEEEecccccc---------------------------------------
Confidence 77999999 5678899999999999999986431000
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
. ...... +.+|...|.+++|+|++..|+++ .|++|++||+++++...
T Consensus 143 -----------------------~--------~~~~~~-~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~ 190 (354)
T 2pbi_B 143 -----------------------M--------AAKKKS-VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ 190 (354)
T ss_dssp -----------------------S--------GGGCEE-EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred -----------------------c--------ccccee-eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE
Confidence 0 000011 25788999999999999999999 99999999998765443
Q ss_pred eeeccCCCcccccCCceEEEEEecC--CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
.+.+|...|.+++|+|+ + ++|++|+.||.|++||+++++.. .. +.+|...|.+
T Consensus 191 --------~~~~h~~~v~~~~~~~~~~g-~~l~sgs~Dg~v~~wd~~~~~~~----~~------------~~~h~~~v~~ 245 (354)
T 2pbi_B 191 --------SFHGHGADVLCLDLAPSETG-NTFVSGGCDKKAMVWDMRSGQCV----QA------------FETHESDVNS 245 (354)
T ss_dssp --------EEECCSSCEEEEEECCCSSC-CEEEEEETTSCEEEEETTTCCEE----EE------------ECCCSSCEEE
T ss_pred --------EEcCCCCCeEEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCcEE----EE------------ecCCCCCeEE
Confidence 45778999999999884 4 79999999999999999987652 22 4456689999
Q ss_pred EEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEE
Q 010256 347 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (514)
Q Consensus 347 ~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (514)
++|+|++.+|++++. ++|++||++. .+.+..+..+.. ...+.+++|+|+|++|++|+.|+.|++|
T Consensus 246 v~~~p~~~~l~s~s~D~~v~lwd~~~-~~~~~~~~~~~~-------------~~~~~~~~~s~~g~~l~~g~~d~~i~vw 311 (354)
T 2pbi_B 246 VRYYPSGDAFASGSDDATCRLYDLRA-DREVAIYSKESI-------------IFGASSVDFSLSGRLLFAGYNDYTINVW 311 (354)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTC-------------CSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEcCCCc-------------ccceeEEEEeCCCCEEEEEECCCcEEEE
Confidence 999999999999865 9999999986 555544433221 1224589999999999999999999999
Q ss_pred ecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 426 GCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 426 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|+.++.. ...+.+|..+|.+++|+|++++|++|+.|++|++
T Consensus 312 d~~~~~~-~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~v 352 (354)
T 2pbi_B 312 DVLKGSR-VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRV 352 (354)
T ss_dssp ETTTCSE-EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred ECCCCce-EEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEe
Confidence 9988754 4788999999999999999999999999999998
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.8e-42 Score=322.69 Aligned_cols=289 Identities=16% Similarity=0.190 Sum_probs=224.6
Q ss_pred cccccceEEEEEcCCCCeEEEecC------CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDR------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (514)
..|...|++++|||||++||+|+. |+.|++|+..++... ........+|.
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~-------------------~~~~~~~~~~~----- 94 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN-------------------ESLCTAGVQTE----- 94 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C-------------------GGGCSEEEECS-----
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc-------------------eeEecccCCCC-----
Confidence 469999999999999999999997 788999987665421 11223344565
Q ss_pred ccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 106 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
..|.+++|+| ++ .+++++.||+|++||+.+++......
T Consensus 95 -------~~V~~~~~s~--d~-~~l~~s~dg~v~lWd~~~~~~~~~~~-------------------------------- 132 (357)
T 4g56_B 95 -------AGVTDVAWVS--EK-GILVASDSGAVELWEILEKESLLVNK-------------------------------- 132 (357)
T ss_dssp -------SCEEEEEEET--TT-EEEEEETTSCEEEC--------CCCC--------------------------------
T ss_pred -------CCEEEEEEcC--CC-CEEEEECCCEEEEeeccccceeEEEe--------------------------------
Confidence 7899999964 54 56778899999999998765221100
Q ss_pred cccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCC
Q 010256 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~ 264 (514)
....+|...|.+++|+|++++|++| .|++|++||++++
T Consensus 133 -----------------------------------------~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~ 171 (357)
T 4g56_B 133 -----------------------------------------FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK 171 (357)
T ss_dssp -----------------------------------------EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT
T ss_pred -----------------------------------------eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 0025788999999999999999999 9999999999866
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
+... .+.+|...|++++|+|++..++++++.|+.|++||+++++... .+. +..|...+
T Consensus 172 ~~~~--------~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~----~~~----------~~~~~~~v 229 (357)
T 4g56_B 172 AVLK--------SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT----RID----------FCASDTIP 229 (357)
T ss_dssp EEEE--------EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC----BCC----------CTTCCSCE
T ss_pred cEEE--------EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee----eee----------eccccccc
Confidence 5443 4577999999999999986689999999999999999876531 111 12344679
Q ss_pred eEEEEecCC-CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC-CEEEEEeCCCc
Q 010256 345 SDIKFARNG-RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNL 421 (514)
Q Consensus 345 ~~~~~s~~g-~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~ 421 (514)
.+++|+|++ .+|++|+. +.|++||+++ ++++..+..|... |.+++|+|++ ++|++|+.|+.
T Consensus 230 ~~v~~sp~~~~~la~g~~d~~i~~wd~~~-~~~~~~~~~~~~~---------------v~~l~~sp~~~~~lasgs~D~~ 293 (357)
T 4g56_B 230 TSVTWHPEKDDTFACGDETGNVSLVNIKN-PDSAQTSAVHSQN---------------ITGLAYSYHSSPFLASISEDCT 293 (357)
T ss_dssp EEEEECTTSTTEEEEEESSSCEEEEESSC-GGGCEEECCCSSC---------------EEEEEECSSSSCCEEEEETTSC
T ss_pred cchhhhhcccceEEEeecccceeEEECCC-CcEeEEEecccee---------------EEEEEEcCCCCCEEEEEeCCCE
Confidence 999999974 57777764 9999999997 7888888887754 4499999987 57999999999
Q ss_pred EEEEecCCCceeeeeecCCCcceeEEEECC-CCCceeecCCCCeEEE
Q 010256 422 FRVFGCSEGSAESTTLEASKNPMRRQVQTP-SRPSRPLGSLSGVVRR 467 (514)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~v~i 467 (514)
|+|||+++++. ....+|...|++++|+| ++++|+++|.|++|++
T Consensus 294 i~iwd~~~~~~--~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~i 338 (357)
T 4g56_B 294 VAVLDADFSEV--FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLH 338 (357)
T ss_dssp EEEECTTSCEE--EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred EEEEECCCCcE--eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEE
Confidence 99999998743 34458999999999998 7999999999999999
No 14
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-41 Score=369.12 Aligned_cols=378 Identities=13% Similarity=0.181 Sum_probs=281.9
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|.
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-----------------------~~~~~~~h~---------- 657 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-----------------------KLLDIKAHE---------- 657 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------------------EEEEECCCS----------
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-----------------------EEEEeccCC----------
Confidence 45799999999999999999999999999999998776 346678888
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++| +++++++++++.|+.|++||+.+++.......+ .+.+. .++|+|++...
T Consensus 658 --~~v~~~~~--s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--------~~~v~-------~~~~~~~~~~~---- 714 (1249)
T 3sfz_A 658 --DEVLCCAF--SSDDSYIATCSADKKVKIWDSATGKLVHTYDEH--------SEQVN-------CCHFTNKSNHL---- 714 (1249)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEEECC--------SSCEE-------EEEECSSSSCC----
T ss_pred --CCEEEEEE--ecCCCEEEEEeCCCeEEEEECCCCceEEEEcCC--------CCcEE-------EEEEecCCCce----
Confidence 88999999 567889999999999999999999877666544 23444 78899854422
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
++++++.|+.|++|| +... .+... +.+|...|.+++|+|++++|+++ .||+|++||+++......
T Consensus 715 ------~l~sg~~d~~v~vwd-~~~~------~~~~~-~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~ 780 (1249)
T 3sfz_A 715 ------LLATGSNDFFLKLWD-LNQK------ECRNT-MFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKS 780 (1249)
T ss_dssp ------EEEEEETTSCEEEEE-TTSS------SEEEE-ECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEE
T ss_pred ------EEEEEeCCCeEEEEE-CCCc------chhhe-ecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccce
Confidence 128999999999999 3322 22333 36899999999999999999999 999999999986543221
Q ss_pred ee------------------------------------------ccCC-----CcccccCCceEEEEEecCCCcEEEEEe
Q 010256 270 IV------------------------------------------DVKP-----ANMEDLTEVITSAEFHPTHCNMLAYSS 302 (514)
Q Consensus 270 ~~------------------------------------------~~~~-----~~~~~~~~~i~~v~~~p~~~~~l~~~~ 302 (514)
+. +... ....+|...+.+++|+|++ .++++++
T Consensus 781 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~ 859 (1249)
T 3sfz_A 781 INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIAL 859 (1249)
T ss_dssp EECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEEC
T ss_pred ecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEe
Confidence 10 0000 0012577889999999998 8999999
Q ss_pred cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCC---------
Q 010256 303 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMD--------- 372 (514)
Q Consensus 303 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~--------- 372 (514)
.||.|++||+.++... . .+.+|...|.+++|+|+|+++++++. +.|++||+...
T Consensus 860 ~dg~v~vwd~~~~~~~----~------------~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~ 923 (1249)
T 3sfz_A 860 SQYCVELWNIDSRLKV----A------------DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK 923 (1249)
T ss_dssp SSSCEEEEETTTTEEE----E------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEE
T ss_pred CCCeEEEEEcCCCcee----e------------ecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccc
Confidence 9999999999887642 2 23455567788888887777777654 77777775420
Q ss_pred ---------------------------------------------------------------------CCceeeeeecc
Q 010256 373 ---------------------------------------------------------------------SGPVATFQVHE 383 (514)
Q Consensus 373 ---------------------------------------------------------------------~~~~~~~~~~~ 383 (514)
++....+.+|.
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~ 1003 (1249)
T 3sfz_A 924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK 1003 (1249)
T ss_dssp EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS
T ss_pred ceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC
Confidence 11111111121
Q ss_pred ccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCc--------------------------------
Q 010256 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS-------------------------------- 431 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-------------------------------- 431 (514)
..|.+++|+|+|++|++++.||.|++||+.++.
T Consensus 1004 ---------------~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~ 1068 (1249)
T 3sfz_A 1004 ---------------KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVK 1068 (1249)
T ss_dssp ---------------SCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEE
T ss_pred ---------------CceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEE
Confidence 134578888888888888888888888776542
Q ss_pred -------eeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEE
Q 010256 432 -------AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 432 -------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~ 504 (514)
.....+.+|...+.+++|+|+++++++++.|++|++++-. ..........|...|++++|+||+++|+++
T Consensus 1069 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~---~~~~~~~l~~h~~~v~~~~~s~dg~~lat~ 1145 (1249)
T 3sfz_A 1069 VWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD---LLSPLHELKGHNGCVRCSAFSLDGILLATG 1145 (1249)
T ss_dssp EEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSS---SSSCSBCCCCCSSCEEEEEECSSSSEEEEE
T ss_pred EEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECC---CcceeeeeccCCCcEEEEEECCCCCEEEEE
Confidence 1224556788889999999999999999999999993322 112222344688999999999999999999
Q ss_pred ec-CcEEEEe
Q 010256 505 AS-NSLYMYY 513 (514)
Q Consensus 505 ~~-~~~~i~~ 513 (514)
+. +.+++|.
T Consensus 1146 ~~dg~i~vwd 1155 (1249)
T 3sfz_A 1146 DDNGEIRIWN 1155 (1249)
T ss_dssp ETTSCCCEEE
T ss_pred eCCCEEEEEE
Confidence 85 5688886
No 15
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-41 Score=310.57 Aligned_cols=290 Identities=16% Similarity=0.213 Sum_probs=236.5
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeC--CCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceec
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS--ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~--~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (514)
....+++|. +.|.+++|+|. .++.+|++|+.|++|++|++..++......
T Consensus 24 ~~~~~~~H~------------~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~---------------- 75 (321)
T 3ow8_A 24 LFKQEQAHD------------DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWS---------------- 75 (321)
T ss_dssp EEEETTSSS------------SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEE----------------
T ss_pred eeeecccCC------------CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeee----------------
Confidence 345567888 99999999763 356799999999999999987654211100
Q ss_pred ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE
Q 010256 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 249 (514)
+.+|...|.+++|++++.+++
T Consensus 76 -----------------------------------------------------------l~gh~~~v~~~~~~~~~~~l~ 96 (321)
T 3ow8_A 76 -----------------------------------------------------------LEGHQLGVVSVDISHTLPIAA 96 (321)
T ss_dssp -----------------------------------------------------------ECCCSSCEEEEEECSSSSEEE
T ss_pred -----------------------------------------------------------eccCCCCEEEEEECCCCCEEE
Confidence 367889999999999999999
Q ss_pred Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceecc
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 328 (514)
++ .|++|++||+++++... .+..+...+.+++|+|++ ++|++|+.|+.|++||+++++.. ..
T Consensus 97 s~s~D~~i~lWd~~~~~~~~--------~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~----~~---- 159 (321)
T 3ow8_A 97 SSSLDAHIRLWDLENGKQIK--------SIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKE----YS---- 159 (321)
T ss_dssp EEETTSEEEEEETTTTEEEE--------EEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEE----EE----
T ss_pred EEeCCCcEEEEECCCCCEEE--------EEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCcee----EE----
Confidence 99 99999999998665443 345567788999999999 89999999999999999887642 22
Q ss_pred CCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEc
Q 010256 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (514)
+..|...|.+++|+|+|++|++|+. +.|++||+++ ++.+..+.+|...+ .+++|+
T Consensus 160 --------~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~-~~~~~~~~~h~~~v---------------~~l~~s 215 (321)
T 3ow8_A 160 --------LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLHTLEGHAMPI---------------RSLTFS 215 (321)
T ss_dssp --------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCC---------------CEEEEC
T ss_pred --------ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEcccCCce---------------eEEEEc
Confidence 3344568999999999999999865 9999999997 88888888877553 399999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccccccc
Q 010256 408 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSM 487 (514)
Q Consensus 408 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~ 487 (514)
|++++|++|+.|+.|++||+.++. ...++.+|...|.+++|+|++++|++++.|++|++.+ +..........+|..
T Consensus 216 pd~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd---~~~~~~~~~~~~h~~ 291 (321)
T 3ow8_A 216 PDSQLLVTASDDGYIKIYDVQHAN-LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD---VGTRTCVHTFFDHQD 291 (321)
T ss_dssp TTSCEEEEECTTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE---TTTTEEEEEECCCSS
T ss_pred CCCCEEEEEcCCCeEEEEECCCcc-eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEe---CCCCEEEEEEcCCCC
Confidence 999999999999999999999874 4478999999999999999999999999999999933 222222333446899
Q ss_pred ceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 488 KLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 488 ~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
.|.+++|+|++++|++++ ++.+.+|.
T Consensus 292 ~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 292 QVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 999999999999999887 55788886
No 16
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.1e-40 Score=335.60 Aligned_cols=388 Identities=12% Similarity=0.129 Sum_probs=287.9
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
..|.+.|++++|+|+|++||+++ ++.|+||++.++.. .......+.+|.
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-------------------~~~~~~~~~~h~----------- 63 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-------------------KVPPVVQFTGHG----------- 63 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-------------------SSCSEEEECTTT-----------
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-------------------ccccceEEecCC-----------
Confidence 47889999999999999999998 88999999986610 001346678888
Q ss_pred ccc-eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCcc------EEEEEeeccCCCccccCCcceecccccCCceeeccCCC
Q 010256 112 EEK-INKIRWCQSANSALYLLSTNDKTIKLWKVQEK------KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (514)
Q Consensus 112 ~~~-v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 184 (514)
.. |++++|+|..++++|++++.||.|++||+.++ +......+..+ .+.+. .++|+|+++
T Consensus 64 -~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~------~~~v~-------~~~~s~~~~ 129 (615)
T 1pgu_A 64 -SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL------AGPIS-------DISWDFEGR 129 (615)
T ss_dssp -TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC------SSCEE-------EEEECTTSS
T ss_pred -CceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcc------cccEE-------EEEEeCCCC
Confidence 88 99999954227889999999999999999765 32222222211 23444 889999999
Q ss_pred ccccccCCCCCCcccCCCCC----CcEEeceeeccccccccccccccccccCccCeEEEEECCCCC-EEEEe-cCCeEEE
Q 010256 185 CGERNFGCASNDSSFPPGGV----SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINL 258 (514)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~i 258 (514)
.+ ++++.+ +.|.+|+ .. ..... +.+|...|.+++|+|+++ .++++ .|+.|++
T Consensus 130 ~l------------~~~~~~~~~~~~v~~~d-~~--------~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~v 187 (615)
T 1pgu_A 130 RL------------CVVGEGRDNFGVFISWD-SG--------NSLGE-VSGHSQRINACHLKQSRPMRSMTVGDDGSVVF 187 (615)
T ss_dssp EE------------EEEECCSSCSEEEEETT-TC--------CEEEE-CCSCSSCEEEEEECSSSSCEEEEEETTTEEEE
T ss_pred EE------------EEeccCCCCccEEEEEE-CC--------Cccee-eecCCccEEEEEECCCCCcEEEEEeCCCcEEE
Confidence 88 777766 7899888 21 12222 378999999999999998 78888 9999999
Q ss_pred EeccCCCceeeeeccCCCcccccCC---ceEEEEEecC-CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCcc
Q 010256 259 WNLEISNQSFNIVDVKPANMEDLTE---VITSAEFHPT-HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (514)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~---~i~~v~~~p~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 334 (514)
||+++.+... .+..|.. .|.+++|+|+ + ++|++++.|+.|++||+++++.. ..+...
T Consensus 188 wd~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~------ 248 (615)
T 1pgu_A 188 YQGPPFKFSA--------SDRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFL----KYIEDD------ 248 (615)
T ss_dssp EETTTBEEEE--------EECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEE----EECCBT------
T ss_pred EeCCCcceee--------eecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEe----EEeccc------
Confidence 9998654432 3566777 8999999999 8 89999999999999999887653 222000
Q ss_pred ceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeec-------------------------------
Q 010256 335 SFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH------------------------------- 382 (514)
Q Consensus 335 ~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~------------------------------- 382 (514)
...|...|.+++|+ ++++|++++. +.|++||+.+ ++.+..+..+
T Consensus 249 --~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~ 324 (615)
T 1pgu_A 249 --QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 324 (615)
T ss_dssp --TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT-TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEE
T ss_pred --ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEE
Confidence 01466789999999 9999998764 9999999875 4433333222
Q ss_pred --------------ccccc-----------------------------------------cc-----------c------
Q 010256 383 --------------EHLRP-----------------------------------------KL-----------C------ 390 (514)
Q Consensus 383 --------------~~~~~-----------------------------------------~~-----------~------ 390 (514)
...+. .+ -
T Consensus 325 d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~ 404 (615)
T 1pgu_A 325 ELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE 404 (615)
T ss_dssp ETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE
T ss_pred ECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCc
Confidence 00000 00 0
Q ss_pred -------------------------------------------------------------c---------------ccc
Q 010256 391 -------------------------------------------------------------D---------------LYE 394 (514)
Q Consensus 391 -------------------------------------------------------------~---------------~~~ 394 (514)
+ ...
T Consensus 405 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~ 484 (615)
T 1pgu_A 405 FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLK 484 (615)
T ss_dssp CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECS
T ss_pred ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCcccccccc
Confidence 0 000
Q ss_pred cCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC-CCcceeEEEECC----------CCCceeecCCCC
Q 010256 395 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-SKNPMRRQVQTP----------SRPSRPLGSLSG 463 (514)
Q Consensus 395 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~----------~~~~l~s~s~d~ 463 (514)
......|.+++|+|++++|++++.||.|++||+.+++. ...+.+ |...|.+++|+| ++++|++++.|+
T Consensus 485 ~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg 563 (615)
T 1pgu_A 485 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV-KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 563 (615)
T ss_dssp SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS
T ss_pred CCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc-eeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCC
Confidence 01112567899999999999999999999999998744 466777 999999999999 999999999999
Q ss_pred eEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 464 VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 464 ~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
.|++++-.... ........|...|++++|+||++ |++++ ++.+++|.
T Consensus 564 ~i~iw~~~~~~--~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 564 NIFIYSVKRPM--KIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp CEEEEESSCTT--CCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred cEEEEECCCCc--eechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence 99994332211 12222345899999999999999 88777 56688886
No 17
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.2e-41 Score=305.14 Aligned_cols=287 Identities=17% Similarity=0.193 Sum_probs=233.3
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
...++.+|. +.|.+++| ++++.+|++++.||.|++||+.+++....
T Consensus 5 ~~~~~~~h~------------~~V~~~~f--sp~~~~l~s~~~dg~v~lWd~~~~~~~~~-------------------- 50 (304)
T 2ynn_A 5 IKKTFSNRS------------DRVKGIDF--HPTEPWVLTTLYSGRVELWNYETQVEVRS-------------------- 50 (304)
T ss_dssp CEEEEEEEC------------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEE--------------------
T ss_pred eEEeecCCC------------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCceeEE--------------------
Confidence 456788888 88999999 56778999999999999999988763321
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 251 (514)
+..|..+|.+++|+|++++|++|
T Consensus 51 ---------------------------------------------------------~~~~~~~v~~~~~~~~~~~l~s~ 73 (304)
T 2ynn_A 51 ---------------------------------------------------------IQVTETPVRAGKFIARKNWIIVG 73 (304)
T ss_dssp ---------------------------------------------------------EECCSSCEEEEEEEGGGTEEEEE
T ss_pred ---------------------------------------------------------eeccCCcEEEEEEeCCCCEEEEE
Confidence 14566789999999999999999
Q ss_pred -cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
.|++|++||+++++... .+.+|...|.+++|+|++ .+|++|+.|+.|++||++++... .
T Consensus 74 s~d~~i~vwd~~~~~~~~--------~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~---~-------- 133 (304)
T 2ynn_A 74 SDDFRIRVFNYNTGEKVV--------DFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWAL---E-------- 133 (304)
T ss_dssp ETTSEEEEEETTTCCEEE--------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEE---E--------
T ss_pred CCCCEEEEEECCCCcEEE--------EEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcch---h--------
Confidence 99999999999776543 467799999999999999 89999999999999999876432 1
Q ss_pred CCccceeeccccceeEEEEec-CCCEEEEEe-CCeEEEEEccCCCCceeeeeecc-ccccccccccccCCccceeeEEEc
Q 010256 331 PGTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHE-HLRPKLCDLYENDSIFDKFECCLS 407 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s 407 (514)
..+.+|...|.+++|+| ++.+|++|+ |++|++||+.. ..+...+..+. .. +..++|+
T Consensus 134 ----~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~-~~~~~~~~~~~~~~---------------v~~~~~~ 193 (304)
T 2ynn_A 134 ----QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLTTGQERG---------------VNYVDYY 193 (304)
T ss_dssp ----EEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC-SSCSEEEECCCTTC---------------EEEEEEC
T ss_pred ----hhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCccceeccCCcCc---------------EEEEEEE
Confidence 22456778999999999 678899876 59999999986 55544443322 21 3367787
Q ss_pred C--CCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccccc
Q 010256 408 G--DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF 485 (514)
Q Consensus 408 ~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~ 485 (514)
| ++++|++|+.|+.|++||+.+++ ...++.+|...|..++|+|++++|++++.|++|++.+.. ..........+
T Consensus 194 ~~~~~~~l~s~s~D~~i~iWd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~---~~~~~~~~~~~ 269 (304)
T 2ynn_A 194 PLPDKPYMITASDDLTIKIWDYQTKS-CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS---TYKVEKTLNVG 269 (304)
T ss_dssp CSTTCCEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT---TCCEEEEECCS
T ss_pred EcCCCCEEEEEcCCCeEEEEeCCCCc-cceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECC---CCceeeeccCC
Confidence 6 78899999999999999999874 458899999999999999999999999999999994332 22222233346
Q ss_pred ccceEEEEEcCCCC--EEEEEecCcEEEEe
Q 010256 486 SMKLLHLAWHPSEN--SIACAASNSLYMYY 513 (514)
Q Consensus 486 ~~~v~~~~~spd~~--~l~~~~~~~~~i~~ 513 (514)
...+.+++|+|++. +||+++++++.+|.
T Consensus 270 ~~~~~~~~~~~~~~~~~~asg~~~g~~~~~ 299 (304)
T 2ynn_A 270 LERSWCIATHPTGRKNYIASGFDNGFTVLS 299 (304)
T ss_dssp SSSEEEEEECTTCGGGCEEEEETTEEEEEE
T ss_pred CccEEEEEECCCCCceEEEEecCCceEEEE
Confidence 78999999999985 68999999999986
No 18
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.7e-42 Score=370.04 Aligned_cols=397 Identities=15% Similarity=0.207 Sum_probs=298.0
Q ss_pred cccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceee
Q 010256 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (514)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (514)
-..|+.... +. .....+|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ..
T Consensus 639 i~vw~~~~~--~~-~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-----------------------~~ 692 (1249)
T 3sfz_A 639 LQVFKAETG--EK-LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK-----------------------LV 692 (1249)
T ss_dssp EEEEETTTC--CE-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------------------EE
T ss_pred EEEEECCCC--CE-EEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc-----------------------eE
Confidence 345766542 11 11234799999999999999999999999999999998766 44
Q ss_pred eeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccccc
Q 010256 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (514)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (514)
..+.+|. ..|.+++|+|..++.++++++.|+.|++||+.+++.......+ .+.+.
T Consensus 693 ~~~~~~~------------~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h--------~~~v~----- 747 (1249)
T 3sfz_A 693 HTYDEHS------------EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH--------TNSVN----- 747 (1249)
T ss_dssp EEEECCS------------SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCC--------SSCEE-----
T ss_pred EEEcCCC------------CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCC--------CCCEE-----
Confidence 6778888 8899999987667779999999999999999998876655543 23444
Q ss_pred CCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccc---------------------------------
Q 010256 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNL--------------------------------- 220 (514)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~--------------------------------- 220 (514)
.++|+|+++.+ ++++.|+.|++||+ .......
T Consensus 748 --~~~~sp~~~~l------------~s~s~dg~v~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1249)
T 3sfz_A 748 --HCRFSPDDELL------------ASCSADGTLRLWDV-RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK 812 (1249)
T ss_dssp --EEEECSSTTEE------------EEEESSSEEEEEEG-GGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSE
T ss_pred --EEEEecCCCEE------------EEEECCCeEEEEeC-CCCcccceecccccccccCCccccccceEEEEEECCCCCE
Confidence 78899999888 88888888888883 2211000
Q ss_pred ----------------------------------------------------------cccccccccccCccCeEEEEEC
Q 010256 221 ----------------------------------------------------------VAGCRRIYAHAHDYHINSISNN 242 (514)
Q Consensus 221 ----------------------------------------------------------~~~~~~~~~~~h~~~v~~~~~~ 242 (514)
....... +.+|...|.+++|+
T Consensus 813 l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~-~~~h~~~v~~v~~s 891 (1249)
T 3sfz_A 813 IIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD-CRGHLSWVHGVMFS 891 (1249)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEE-ECCCSSCEEEEEEC
T ss_pred EEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeee-cCCCccceEEEEEC
Confidence 0000111 25688889999999
Q ss_pred CCCCEEEEe-cCCeEEEEeccCCCc-------------------------------------------------------
Q 010256 243 SDGETFISA-DDLRINLWNLEISNQ------------------------------------------------------- 266 (514)
Q Consensus 243 ~~~~~l~s~-~d~~i~iwd~~~~~~------------------------------------------------------- 266 (514)
|+++.|+++ .|+.|++|++.....
T Consensus 892 pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 971 (1249)
T 3sfz_A 892 PDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP 971 (1249)
T ss_dssp TTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT
T ss_pred CCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC
Confidence 999999988 899999998652100
Q ss_pred ------------eeeeeccCC----CcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 267 ------------SFNIVDVKP----ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 267 ------------~~~~~~~~~----~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
.+.+++... ..+.+|...|.+++|+|++ +++++++.||.|++||+.++...
T Consensus 972 ~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~------------ 1038 (1249)
T 3sfz_A 972 HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQVWNWQTGDYV------------ 1038 (1249)
T ss_dssp TSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEEEETTTTEEE------------
T ss_pred CCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCceE------------
Confidence 001111110 1234577778888888887 78888888888888888776542
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (514)
.+.+|...|.+++|+|++.+++.+.++.|++||+.+ ++.+..+..|...+ .+++|+|++
T Consensus 1039 -----~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~~~~~v---------------~~~~~s~d~ 1097 (1249)
T 3sfz_A 1039 -----FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVIT-GRIERDFTCHQGTV---------------LSCAISSDA 1097 (1249)
T ss_dssp -----CCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTT-TCCCEEEECCSSCC---------------CCEEECSSS
T ss_pred -----EEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCC-CceeEEEcccCCcE---------------EEEEECCCC
Confidence 133566889999999988766666779999999997 88888888887653 389999999
Q ss_pred CEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeC--CCCCccc----cCCcccc
Q 010256 411 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG--ADNSALD----ANGNAFD 484 (514)
Q Consensus 411 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~--~~~~~~~----~~~~~~~ 484 (514)
++|++++.||.|++||+.++.. ...+.+|..+|.+++|+|++++|++++.||.|++++- .+..... .......
T Consensus 1098 ~~l~s~s~d~~v~iwd~~~~~~-~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1176 (1249)
T 3sfz_A 1098 TKFSSTSADKTAKIWSFDLLSP-LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTAT 1176 (1249)
T ss_dssp SSCEEECCSSCCCEECSSSSSC-SBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------
T ss_pred CEEEEEcCCCcEEEEECCCcce-eeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccc
Confidence 9999999999999999998754 4788999999999999999999999999999999332 2111100 0011135
Q ss_pred cccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 485 FSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 485 ~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
|...|++++|+||+++|++++ +.+.+|.
T Consensus 1177 ~~~~v~~l~fs~dg~~l~s~~-g~v~vwd 1204 (1249)
T 3sfz_A 1177 HGGWVTDVCFSPDSKTLVSAG-GYLKWWN 1204 (1249)
T ss_dssp CCSCCCEEEECTTSSCEEEES-SSEEEBC
T ss_pred cCceEEEEEECCCCCEEEECC-CeEEEEE
Confidence 788999999999999999886 7899986
No 19
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.7e-41 Score=319.47 Aligned_cols=286 Identities=15% Similarity=0.220 Sum_probs=238.9
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
....+.+|. ..|++++| ++++.+|++++.|++|++||+.+++...
T Consensus 100 ~~~~l~gh~------------~~V~~~~~--~p~~~~l~s~s~Dg~i~vwd~~~~~~~~--------------------- 144 (410)
T 1vyh_C 100 EKYALSGHR------------SPVTRVIF--HPVFSVMVSASEDATIKVWDYETGDFER--------------------- 144 (410)
T ss_dssp CSCEEECCS------------SCEEEEEE--CSSSSEEEEEESSSCEEEEETTTCCCCE---------------------
T ss_pred ceEeecccC------------CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEE---------------------
Confidence 344577887 89999999 4567799999999999999998764211
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 251 (514)
. +.+|...|.+++|+|++++|++|
T Consensus 145 -------------------------------------------------------~-l~~h~~~V~~v~~~~~~~~l~sg 168 (410)
T 1vyh_C 145 -------------------------------------------------------T-LKGHTDSVQDISFDHSGKLLASC 168 (410)
T ss_dssp -------------------------------------------------------E-ECCCSSCEEEEEECTTSSEEEEE
T ss_pred -------------------------------------------------------E-EeccCCcEEEEEEcCCCCEEEEE
Confidence 0 26788999999999999999999
Q ss_pred -cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
.|++|++||+.+.+... .+.+|...|.+++|+|++ .+|++|+.|+.|++||++++... ..
T Consensus 169 s~D~~i~iwd~~~~~~~~--------~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~----~~------ 229 (410)
T 1vyh_C 169 SADMTIKLWDFQGFECIR--------TMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCV----KT------ 229 (410)
T ss_dssp ETTSCCCEEETTSSCEEE--------CCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE----EE------
T ss_pred eCCCeEEEEeCCCCceeE--------EEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEE----EE------
Confidence 99999999998654332 567899999999999998 89999999999999999987652 22
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
+.+|...|.++.|+|++.+|++|+. +.|++||+.+ ++....+..|... |.+++|+|+
T Consensus 230 ------~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~-~~~~~~~~~h~~~---------------v~~~~~~~~ 287 (410)
T 1vyh_C 230 ------FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT-KECKAELREHRHV---------------VECISWAPE 287 (410)
T ss_dssp ------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECCS
T ss_pred ------EeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC-CceeeEecCCCce---------------EEEEEEcCc
Confidence 4556688999999999999999864 9999999997 7888888877765 348899886
Q ss_pred --------------------CCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEee
Q 010256 410 --------------------GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK 469 (514)
Q Consensus 410 --------------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~ 469 (514)
|.+|++|+.|+.|++||+.++. ...++.+|...|.+++|+|++++|++++.|++|++.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd 366 (410)
T 1vyh_C 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366 (410)
T ss_dssp CGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEEC
T ss_pred ccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc-eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 6799999999999999999874 4478899999999999999999999999999999943
Q ss_pred CCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 470 GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
. ...........|...|++++|+|++++|++++ ++.+.+|.
T Consensus 367 ~---~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 367 Y---KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp C---TTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred C---CCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 2 22122233446899999999999999999888 66788885
No 20
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.6e-41 Score=309.96 Aligned_cols=306 Identities=15% Similarity=0.222 Sum_probs=229.4
Q ss_pred ccccc-ceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 32 VQEVD-IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 32 ~~h~~-~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.+|.+ .|.+++|+|+|++||+|+.|+.|+||++.++... .......+|.
T Consensus 12 ~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~--------------------~~~~~~~~h~---------- 61 (345)
T 3fm0_A 12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI--------------------CKSVLSEGHQ---------- 61 (345)
T ss_dssp CCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE--------------------EEEEECSSCS----------
T ss_pred cCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce--------------------eeeeeccccC----------
Confidence 36777 9999999999999999999999999998765421 0112235787
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++| ++++++|++++.|++|++|++..+......
T Consensus 62 --~~v~~~~~--sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~-------------------------------------- 99 (345)
T 3fm0_A 62 --RTVRKVAW--SPCGNYLASASFDATTCIWKKNQDDFECVT-------------------------------------- 99 (345)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSCEEEEEECCC-EEEEE--------------------------------------
T ss_pred --CcEEEEEE--CCCCCEEEEEECCCcEEEEEccCCCeEEEE--------------------------------------
Confidence 88999999 567889999999999999998765422110
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
. +.+|...|.+++|+|++++|++| .|++|++||++.......
T Consensus 100 ------------------------------------~-~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~ 142 (345)
T 3fm0_A 100 ------------------------------------T-LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC 142 (345)
T ss_dssp ------------------------------------E-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE
T ss_pred ------------------------------------E-ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE
Confidence 1 26788999999999999999999 999999999986543221
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
+ ..+.+|...|.+++|+|++ .+|++|+.|+.|++||++++.... ...+.+|...|.+++|
T Consensus 143 ~-----~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~--------------~~~~~~h~~~v~~l~~ 202 (345)
T 3fm0_A 143 V-----SVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVC--------------CATLEGHESTVWSLAF 202 (345)
T ss_dssp E-----EEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEE--------------EEEECCCSSCEEEEEE
T ss_pred E-----EEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEE--------------EEEecCCCCceEEEEE
Confidence 1 1456789999999999999 899999999999999998764210 1225567789999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecc-ccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHE-HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
+|+|++|++++. ++|+|||...++.......... .....+..+ .......|++++|+|++.+|++++.|+.|++|+.
T Consensus 203 sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~ 281 (345)
T 3fm0_A 203 DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL-SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE 281 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE-CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEE
T ss_pred CCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEe-cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEe
Confidence 999999999865 9999999754222111000000 000000000 0001112559999999999999999999999998
Q ss_pred CCCce--------eeeeecCCCcceeEEEECCCCC-ceeecCCCCeEEE
Q 010256 428 SEGSA--------ESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~~--------~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~v~i 467 (514)
..... ......+|...|.+++|+|+++ +||++|.||+|++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~ 330 (345)
T 3fm0_A 282 DPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAF 330 (345)
T ss_dssp CTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred CCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEE
Confidence 75421 1123468999999999999985 8999999999999
No 21
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.9e-41 Score=306.63 Aligned_cols=298 Identities=14% Similarity=0.195 Sum_probs=235.2
Q ss_pred ccccccceEEEEEcCCC-CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 31 EVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g-~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
..+|.+.|++++|+|++ ++|++|+.|++|++|++.+.... .......+.+|.
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~------------------~~~~~~~~~~h~--------- 65 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK------------------FGVPVRSFKGHS--------- 65 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE------------------EEEEEEEEECCS---------
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc------------------ccccceEEeCCc---------
Confidence 45899999999999965 89999999999999998643321 122456788998
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.+++| ++++.+|++++.|++|++||+.+++....+..+ .+.|. +++|+|+++.+
T Consensus 66 ---~~v~~~~~--s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h--------~~~v~-------~~~~~~~~~~l--- 122 (319)
T 3frx_A 66 ---HIVQDCTL--TADGAYALSASWDKTLRLWDVATGETYQRFVGH--------KSDVM-------SVDIDKKASMI--- 122 (319)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECC--------SSCEE-------EEEECTTSCEE---
T ss_pred ---ccEEEEEE--CCCCCEEEEEeCCCEEEEEECCCCCeeEEEccC--------CCcEE-------EEEEcCCCCEE---
Confidence 88999999 677889999999999999999999876665544 24455 88999999998
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC------CCEEEEe-cCCeEEEEecc
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD------GETFISA-DDLRINLWNLE 262 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------~~~l~s~-~d~~i~iwd~~ 262 (514)
++++.|+.|++|| +.. .+... +.+|...|.+++|.|. +..|+++ .|++|++||++
T Consensus 123 ---------~s~s~D~~i~vwd-~~~-------~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 184 (319)
T 3frx_A 123 ---------ISGSRDKTIKVWT-IKG-------QCLAT-LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184 (319)
T ss_dssp ---------EEEETTSCEEEEE-TTS-------CEEEE-ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETT
T ss_pred ---------EEEeCCCeEEEEE-CCC-------CeEEE-EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC
Confidence 9999999999999 321 12223 3689999999999985 4488888 99999999998
Q ss_pred CCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccc
Q 010256 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
+.+... .+.+|...|.+++|+|++ .+|++|+.||.|++||+++++.. ..+..+ .
T Consensus 185 ~~~~~~--------~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~-------------~ 238 (319)
T 3frx_A 185 QFQIEA--------DFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAM----YTLSAQ-------------D 238 (319)
T ss_dssp TTEEEE--------EECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE----EEEECC-------------S
T ss_pred cchhhe--------eecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE----EEecCC-------------C
Confidence 654332 457799999999999999 89999999999999999987652 333222 5
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcE
Q 010256 343 SISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (514)
.|.+++|+|++.+++++.+..+++|++.. ...+..+..+..... ...-..+.+++|+|||++|++|+.||.|
T Consensus 239 ~v~~~~~sp~~~~la~~~~~~i~v~~~~~-~~~~~~~~~~~~~~~-------~~~~~~v~~~~~spdg~~l~sg~~Dg~i 310 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATATGIKVFSLDP-QYLVDDLRPEFAGYS-------KAAEPHAVSLAWSADGQTLFAGYTDNVI 310 (319)
T ss_dssp CEEEEEECSSSSEEEEEETTEEEEEEETT-EEEEEEECCCCTTCC-------GGGCCCEEEEEECTTSSEEEEEETTSCE
T ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEEeCc-CeeeeccCccccccc-------cCcCcceeEEEECCCCCEEEEeecCceE
Confidence 79999999999999999888899999985 544444432211100 0001124589999999999999999999
Q ss_pred EEEecCCC
Q 010256 423 RVFGCSEG 430 (514)
Q Consensus 423 ~iwd~~~~ 430 (514)
+|||+.++
T Consensus 311 ~vWd~~t~ 318 (319)
T 3frx_A 311 RVWQVMTA 318 (319)
T ss_dssp EEEEEEEC
T ss_pred EEEEEeec
Confidence 99998754
No 22
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.3e-40 Score=301.18 Aligned_cols=285 Identities=19% Similarity=0.331 Sum_probs=236.5
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|+|++||+|+.||.|++|++.+++ ....+.+|.
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----------------------~~~~~~~h~---------- 65 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----------------------FEKTISGHK---------- 65 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------------------EEEEECCCS----------
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----------------------cchhhccCC----------
Confidence 45899999999999999999999999999999987665 445677887
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++| ++++++|++++.|+.|++||+.+++....
T Consensus 66 --~~v~~~~~--~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--------------------------------------- 102 (312)
T 4ery_A 66 --LGISDVAW--SSDSNLLVSASDDKTLKIWDVSSGKCLKT--------------------------------------- 102 (312)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEE---------------------------------------
T ss_pred --CceEEEEE--cCCCCEEEEECCCCEEEEEECCCCcEEEE---------------------------------------
Confidence 88999999 56778999999999999999987653221
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+.+|...|.+++|+|++++|+++ .|+.|++||+++.+...
T Consensus 103 --------------------------------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~- 143 (312)
T 4ery_A 103 --------------------------------------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK- 143 (312)
T ss_dssp --------------------------------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE-
T ss_pred --------------------------------------EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE-
Confidence 24677889999999999999999 99999999998665443
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+..|...|.+++|+|++ .+|++++.||.|++||+++++.. ..+. ..+...+..++|
T Consensus 144 -------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~----~~~~-----------~~~~~~~~~~~~ 200 (312)
T 4ery_A 144 -------TLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCL----KTLI-----------DDDNPPVSFVKF 200 (312)
T ss_dssp -------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EEEC-----------CSSCCCEEEEEE
T ss_pred -------EecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcee----eEEe-----------ccCCCceEEEEE
Confidence 456688999999999998 89999999999999999987653 1111 223357999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+|++++|++++. +.|++||+.. ++.+..+..|...... +......+++++|++|+.||.|++||+.
T Consensus 201 ~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 201 SPNGKYILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYC------------IFANFSVTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp CTTSSEEEEEETTTEEEEEETTT-TEEEEEECSSCCSSSC------------CCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred CCCCCEEEEEcCCCeEEEEECCC-CcEEEEEEecCCceEE------------EEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence 999999999764 9999999997 7777777777543210 1123334688999999999999999999
Q ss_pred CCceeeeeecCCCcceeEEEECCCCCceeecC--CCCeEEE
Q 010256 429 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGS--LSGVVRR 467 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s--~d~~v~i 467 (514)
++ .....+.+|...|..++++|+++++++++ .|++|++
T Consensus 268 ~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~ 307 (312)
T 4ery_A 268 TK-EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 307 (312)
T ss_dssp TC-CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEE
T ss_pred Cc-hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEE
Confidence 87 44578999999999999999999999986 6999998
No 23
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.6e-40 Score=302.74 Aligned_cols=290 Identities=17% Similarity=0.204 Sum_probs=235.8
Q ss_pred eeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecc
Q 010256 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (514)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (514)
+....+.+|. +.|.+++| ++++++|++++.||+|++||+.+++....
T Consensus 46 ~~~~~l~gH~------------~~v~~~~~--s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~------------------- 92 (340)
T 1got_B 46 RTRRTLRGHL------------AKIYAMHW--GTDSRLLLSASQDGKLIIWDSYTTNKVHA------------------- 92 (340)
T ss_dssp CEEEEECCCS------------SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTCCEEEE-------------------
T ss_pred hhheeecCCC------------CceEEEEE--CCCCCEEEEEeCCCcEEEEECCCCCcceE-------------------
Confidence 4556788998 89999999 56788999999999999999887653221
Q ss_pred cccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEE
Q 010256 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 250 (514)
+..|...|.+++|+|++++|++
T Consensus 93 ----------------------------------------------------------~~~~~~~v~~~~~s~~~~~l~s 114 (340)
T 1got_B 93 ----------------------------------------------------------IPLRSSWVMTCAYAPSGNYVAC 114 (340)
T ss_dssp ----------------------------------------------------------EECSSSCEEEEEECTTSSEEEE
T ss_pred ----------------------------------------------------------eecCCccEEEEEECCCCCEEEE
Confidence 1456678999999999999999
Q ss_pred e-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccC
Q 010256 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (514)
Q Consensus 251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 329 (514)
| .|+.|++|++.+........ ..+.+|...|.++.|++++ .+++++.|+.|++||+++++.. .
T Consensus 115 ~~~d~~v~iw~~~~~~~~~~~~----~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~----~------ 178 (340)
T 1got_B 115 GGLDNICSIYNLKTREGNVRVS----RELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT----T------ 178 (340)
T ss_dssp EETTCEEEEEETTTCSBSCEEE----EEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEE----E------
T ss_pred EeCCCeEEEEECccCCCcceeE----EEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEE----E------
Confidence 9 99999999998654322211 1467799999999999987 5899999999999999987652 2
Q ss_pred CCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC
Q 010256 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (514)
Q Consensus 330 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (514)
.+.+|...|.+++|+|+++++++|+ |+.|++||++. +..+..+.+|... |.+++|+|
T Consensus 179 ------~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~-~~~~~~~~~h~~~---------------v~~v~~~p 236 (340)
T 1got_B 179 ------TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESD---------------INAICFFP 236 (340)
T ss_dssp ------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CSEEEEECCCSSC---------------EEEEEECT
T ss_pred ------EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCcCC---------------EEEEEEcC
Confidence 2456778999999999999999986 59999999997 8888888887754 44999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCceeeeeec--CCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccc
Q 010256 409 DGGRVATGSYSNLFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFS 486 (514)
Q Consensus 409 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~ 486 (514)
++++|++|+.||.|++||+.+++.. ..+. .+...+.+++|+|++++|++|+.|+.|++.+.... .......+|.
T Consensus 237 ~~~~l~s~s~d~~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~~~~h~ 312 (340)
T 1got_B 237 NGNAFATGSDDATCRLFDLRADQEL-MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHD 312 (340)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEE-EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECCS
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEE-EEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC---cEeeEeecCC
Confidence 9999999999999999999987443 3333 34457999999999999999999999999443221 2222344689
Q ss_pred cceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 487 MKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 487 ~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
..|.+++|+||+++||+++ ++.++||+
T Consensus 313 ~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 313 NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999988 55688884
No 24
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.5e-41 Score=314.67 Aligned_cols=307 Identities=17% Similarity=0.263 Sum_probs=230.0
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|++++|++|+.||+|+|||+.+++ ....+.+|.
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-----------------------~~~~~~~h~---------- 108 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-----------------------KTHAIKLHC---------- 108 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----------------------EEEEEECCC----------
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------------------cceEEecCC----------
Confidence 45899999999999999999999999999999987665 345677887
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCC-ccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG-CGERN 189 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~~~ 189 (514)
..|.+++| ++++++|++++.|+.+++|++.+...... ............+.+. .+.|.|++. .+
T Consensus 109 --~~v~~~~~--s~~g~~las~~~d~~v~iw~~~~~~~~~~-~~~~~~~~~gh~~~v~-------~~~~~~~~~~~l--- 173 (380)
T 3iz6_a 109 --PWVMECAF--APNGQSVACGGLDSACSIFNLSSQADRDG-NMPVSRVLTGHKGYAS-------SCQYVPDQETRL--- 173 (380)
T ss_dssp --TTCCCCEE--CTTSSEEEECCSSSCCEEEECCCCSSCCC-SSTTCCBCCCCSSCCC-------CCBCCSSSSSCE---
T ss_pred --CCEEEEEE--CCCCCEEEEeeCCCcEEEEECCCCccccC-CccceeeccCCCcceE-------EEEEecCCCCEE---
Confidence 77999999 56788999999999999999875321000 0000000001112222 667777643 45
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCCCce
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
++++.|++|++|| +....... .....+..+|...|.+++|++ ++++|++| .|++|++||++.....
T Consensus 174 ---------~s~s~D~~i~~wd-~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~ 241 (380)
T 3iz6_a 174 ---------ITGSGDQTCVLWD-VTTGQRIS--IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA 241 (380)
T ss_dssp ---------EEECTTSCEEEEC-TTTCCEEE--EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC
T ss_pred ---------EEECCCCcEEEEE-cCCCcEEE--EeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc
Confidence 8999999999999 43322111 011122367999999999987 78999999 9999999999854433
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
.. .+.+|...|.+++|+|++ .+|++|+.|+.|++||++++... ..+..+... ...+...|.++
T Consensus 242 ~~-------~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~----~~~~~~~~~-----~~~~~~~v~~~ 304 (380)
T 3iz6_a 242 VR-------TYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQL----QVYNREPDR-----NDNELPIVTSV 304 (380)
T ss_dssp CE-------EECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEE----EEECCCCSS-----SCCSSCSCSEE
T ss_pred eE-------EECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEE----EEecccccc-----cccccCceEEE
Confidence 32 467899999999999999 89999999999999999988753 233222110 11223468999
Q ss_pred EEecCCCEEEEEeC-CeEEEEEccCCCCceeee----eeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcE
Q 010256 348 KFARNGRHILSRDY-MTLKLWDINMDSGPVATF----QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (514)
Q Consensus 348 ~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (514)
+|+|+|++|++|+. +.|++||+.. ++.+..+ .+|... |.+++|+|||++|++|+.|+.|
T Consensus 305 ~~s~~g~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~h~~~---------------v~~l~~s~dg~~l~sgs~D~~i 368 (380)
T 3iz6_a 305 AFSISGRLLFAGYSNGDCYVWDTLL-AEMVLNLGTLQNSHEGR---------------ISCLGLSSDGSALCTGSWDKNL 368 (380)
T ss_dssp EECSSSSEEEEECTTSCEEEEETTT-CCEEEEECCSCSSCCCC---------------CCEEEECSSSSEEEEECTTSCE
T ss_pred EECCCCCEEEEEECCCCEEEEECCC-CceEEEEecccCCCCCc---------------eEEEEECCCCCEEEEeeCCCCE
Confidence 99999999999865 9999999986 6666555 344433 3499999999999999999999
Q ss_pred EEEecCCC
Q 010256 423 RVFGCSEG 430 (514)
Q Consensus 423 ~iwd~~~~ 430 (514)
++|++...
T Consensus 369 ~iW~~~~~ 376 (380)
T 3iz6_a 369 KIWAFSGH 376 (380)
T ss_dssp EEEECCSS
T ss_pred EEEecCCC
Confidence 99999865
No 25
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.6e-40 Score=309.65 Aligned_cols=308 Identities=14% Similarity=0.143 Sum_probs=240.1
Q ss_pred ceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceec
Q 010256 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (514)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (514)
......+.+|. +.|++++| ++++.+|++|+.|++|++||+.+++.......+. ..+.
T Consensus 56 ~~~~~~l~gH~------------~~V~~~~~--sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~--------~~v~- 112 (380)
T 3iz6_a 56 LVCCRTLQGHS------------GKVYSLDW--TPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC--------PWVM- 112 (380)
T ss_dssp CEEEEEECCCS------------SCEEEEEE--CTTSSCEEEEETTSEEEEEETTTTEEEEEEECCC--------TTCC-
T ss_pred eEEeecccccc------------cEEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCccceEEecCC--------CCEE-
Confidence 44667889998 89999999 5677899999999999999999988776665542 2333
Q ss_pred ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEE
Q 010256 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETF 248 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l 248 (514)
.++|+|+|+.+ ++++.|+.+++|+ +...............+.+|.+.|.++.|.|+ +..|
T Consensus 113 ------~~~~s~~g~~l------------as~~~d~~v~iw~-~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l 173 (380)
T 3iz6_a 113 ------ECAFAPNGQSV------------ACGGLDSACSIFN-LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRL 173 (380)
T ss_dssp ------CCEECTTSSEE------------EECCSSSCCEEEE-CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCE
T ss_pred ------EEEECCCCCEE------------EEeeCCCcEEEEE-CCCCccccCCccceeeccCCCcceEEEEEecCCCCEE
Confidence 78999999998 9999999999999 43221111111122234799999999999997 4568
Q ss_pred EEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceec
Q 010256 249 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (514)
Q Consensus 249 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 327 (514)
++| .|++|++||+++++....+ ......+|...|.+++|+|.++++|++|+.|+.|++||++..... .
T Consensus 174 ~s~s~D~~i~~wd~~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~---~----- 242 (380)
T 3iz6_a 174 ITGSGDQTCVLWDVTTGQRISIF---GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA---V----- 242 (380)
T ss_dssp EEECTTSCEEEECTTTCCEEEEE---CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC---C-----
T ss_pred EEECCCCcEEEEEcCCCcEEEEe---ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc---e-----
Confidence 888 9999999999976544321 111225688999999998743389999999999999999854321 2
Q ss_pred cCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE
Q 010256 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (514)
..+.+|.+.|.+++|+|++++|++|++ ++|++||+++ ++.+..+..+..... .....+.+++|
T Consensus 243 -------~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~~~~~~~--------~~~~~v~~~~~ 306 (380)
T 3iz6_a 243 -------RTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT-GHQLQVYNREPDRND--------NELPIVTSVAF 306 (380)
T ss_dssp -------EEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT-TEEEEEECCCCSSSC--------CSSCSCSEEEE
T ss_pred -------EEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC-CcEEEEecccccccc--------cccCceEEEEE
Confidence 234567789999999999999999865 9999999997 777776655432210 11112458999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCceeeeee----cCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 407 SGDGGRVATGSYSNLFRVFGCSEGSAESTTL----EASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 407 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+|+|++|++|+.||.|++||+.+++.. ..+ .+|...|.+++|+|++++|++||.|++|++
T Consensus 307 s~~g~~l~~g~~dg~i~vwd~~~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~i 370 (380)
T 3iz6_a 307 SISGRLLFAGYSNGDCYVWDTLLAEMV-LNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI 370 (380)
T ss_dssp CSSSSEEEEECTTSCEEEEETTTCCEE-EEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred CCCCCEEEEEECCCCEEEEECCCCceE-EEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEE
Confidence 999999999999999999999877543 333 689999999999999999999999999999
No 26
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.6e-40 Score=303.25 Aligned_cols=306 Identities=13% Similarity=0.190 Sum_probs=230.1
Q ss_pred ccccccceEEEEE-----cC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccc
Q 010256 31 EVQEVDIISAIEF-----DK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD 104 (514)
Q Consensus 31 ~~~h~~~V~~~~~-----s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 104 (514)
..+|.+.|++++| ++ ++++||+|+.|++|+|||+.+.+..+ ........+.+|.
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~----------------~~~~~~~~l~~h~---- 76 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG----------------YFGIPHKALTGHN---- 76 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS----------------BSEEEEEEECCCS----
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc----------------ccccccchhccCC----
Confidence 4489999999999 77 99999999999999999987654210 0122445678898
Q ss_pred cccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCC
Q 010256 105 YLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (514)
Q Consensus 105 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 184 (514)
..|.+++| ++++.++++++.|++|++||+++++....+..+ .+.|. +++|+|+++
T Consensus 77 --------~~V~~~~~--~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h--------~~~v~-------~v~~sp~~~ 131 (343)
T 2xzm_R 77 --------HFVSDLAL--SQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH--------QSEVY-------SVAFSPDNR 131 (343)
T ss_dssp --------SCEEEEEE--CSSTTEEEEEETTSEEEEEETTSSCEEEEEECC--------CSCEE-------EEEECSSTT
T ss_pred --------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC--------CCcEE-------EEEECCCCC
Confidence 88999999 567789999999999999999998876655544 24455 889999999
Q ss_pred ccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC----------CEEEEe-cC
Q 010256 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG----------ETFISA-DD 253 (514)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------~~l~s~-~d 253 (514)
.+ ++++.|+.|++|| +..... .......+|...|.+++|+|++ .+|+++ .|
T Consensus 132 ~l------------~s~~~d~~i~~wd-~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d 193 (343)
T 2xzm_R 132 QI------------LSAGAEREIKLWN-ILGECK-----FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD 193 (343)
T ss_dssp EE------------EEEETTSCEEEEE-SSSCEE-----EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT
T ss_pred EE------------EEEcCCCEEEEEe-ccCCce-----eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCC
Confidence 98 9999999999999 321110 0001124788999999999987 789998 99
Q ss_pred CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCc
Q 010256 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (514)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 333 (514)
++|++||.. .+ ... .+.+|...|.+++|+|++ ++|++|+.|+.|++||++..... ...+
T Consensus 194 ~~i~iwd~~-~~-~~~-------~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~---~~~~-------- 252 (343)
T 2xzm_R 194 GRLKVWNTN-FQ-IRY-------TFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYP---QREF-------- 252 (343)
T ss_dssp SEEEEEETT-TE-EEE-------EEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSC---SEEE--------
T ss_pred CEEEEEcCC-Cc-eeE-------EEcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCccc---ceee--------
Confidence 999999954 22 221 456789999999999999 89999999999999999543321 1111
Q ss_pred cceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCcee--eeeeccccccccccccccCCccceeeEEEcCCCC
Q 010256 334 RSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVA--TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (514)
Q Consensus 334 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 411 (514)
.+...|.+++|+|++++++++.++.|++||+.+ .+... .+..+. ....... ......+.+++|+|+|+
T Consensus 253 -----~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~-~~~~~~~~~~~~~--~~~~~~~--~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 253 -----DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMT-QSKAPVCTIEAEP--ITKAEGQ--KGKNPQCTSLAWNALGK 322 (343)
T ss_dssp -----ECSSCEEEEEECSSSCEEEEEESSCEEEEESSS-CCSCSEEECCCCS--GGGBTTB--CCSCCCEEEEEECSSSC
T ss_pred -----cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCC-CCCCceEEeecCc--chhhhhh--cCCCCceEEEEECCCCC
Confidence 122469999999999999988888999999986 44433 332111 0000000 01111356999999999
Q ss_pred EEEEEeCCCcEEEEecCCC
Q 010256 412 RVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 412 ~l~s~~~dg~i~iwd~~~~ 430 (514)
+|++|+.||.|++|+++++
T Consensus 323 ~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CEEEEETTSEEEEEEEEEE
T ss_pred eEEEecCCceEEEEEEEcc
Confidence 9999999999999998754
No 27
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-41 Score=319.34 Aligned_cols=339 Identities=13% Similarity=0.165 Sum_probs=257.9
Q ss_pred cccccceEEEEEcCCCC-eEEEe----------cCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCC
Q 010256 32 VQEVDIISAIEFDKSGD-HLATG----------DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE 100 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~-~l~tg----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 100 (514)
+.+...|++++|+|+|+ +||+| +.||.|+||++.+++.. +.... ..|.
T Consensus 9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--------------------~~~~~-~~~~ 67 (416)
T 2pm9_A 9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--------------------KPIAS-LQVD 67 (416)
T ss_dssp -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--------------------SCSCC-CCCS
T ss_pred HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC--------------------cEEEE-EecC
Confidence 45667899999999987 99999 88999999999876521 01111 1344
Q ss_pred CccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCc----cEEEEEeeccCCCccccCCcceecccccCCc
Q 010256 101 PEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE----KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (514)
Q Consensus 101 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (514)
..|.+++| ++++.+|++++.||.|++|++.+ .+.......+ .+.+. .
T Consensus 68 ------------~~v~~~~~--s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h--------~~~v~-------~ 118 (416)
T 2pm9_A 68 ------------SKFNDLDW--SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNH--------SSSVK-------T 118 (416)
T ss_dssp ------------SCEEEEEE--CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCS--------SSCCC-------E
T ss_pred ------------CceEEEEE--CCCCCeEEEEccCCeEEEeecccccccccchhhccCC--------ccceE-------E
Confidence 78999999 56778999999999999999987 2233333222 23333 8
Q ss_pred eeeccC-CCccccccCCCCCCcccCCCCCCcEEeceeeccccccc---cccccccccccCccCeEEEEECCC-CCEEEEe
Q 010256 177 KSYMAN-GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNL---VAGCRRIYAHAHDYHINSISNNSD-GETFISA 251 (514)
Q Consensus 177 ~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~ 251 (514)
++|+|+ ++.+ ++++.|+.|++|| +...+... ..... .....|...|.+++|+|+ +.+|+++
T Consensus 119 ~~~~~~~~~~l------------~s~~~dg~v~iwd-~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~ 184 (416)
T 2pm9_A 119 VKFNAKQDNVL------------ASGGNNGEIFIWD-MNKCTESPSNYTPLTP-GQSMSSVDEVISLAWNQSLAHVFASA 184 (416)
T ss_dssp EEECSSSTTBE------------EEECSSSCEEBCB-TTTTSSCTTTCCCBCC-CCSCCSSCCCCEEEECSSCTTEEEEE
T ss_pred EEEcCCCCCEE------------EEEcCCCeEEEEE-CCCCcccccccccccc-ccccCCCCCeeEEEeCCCCCcEEEEE
Confidence 899998 7777 9999999999999 44332100 00011 112678999999999999 7899998
Q ss_pred -cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC---eEEEEEcCCCccccccccceec
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFEE 327 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~ 327 (514)
.|+.|++||+++.+....+. . .....+|...|.+++|+|++..++++++.|+ .|++||++++... ...
T Consensus 185 ~~dg~v~iwd~~~~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---~~~--- 256 (416)
T 2pm9_A 185 GSSNFASIWDLKAKKEVIHLS-Y-TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP---LQT--- 256 (416)
T ss_dssp SSSSCEEEEETTTTEEEEEEC-C-CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC---SBC---
T ss_pred cCCCCEEEEECCCCCcceEEe-c-cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC---cEE---
Confidence 99999999998665443321 0 0112234788999999999767999999999 9999999986422 222
Q ss_pred cCCCCccceee-ccccceeEEEEec-CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeE
Q 010256 328 QEAPGTRSFFT-EIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (514)
Q Consensus 328 ~~~~~~~~~~~-~~~~~i~~~~~s~-~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (514)
+. +|...|.+++|+| ++++|++++ |+.|++||+++ ++++..+..|...+ .++
T Consensus 257 ---------~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~v---------------~~~ 311 (416)
T 2pm9_A 257 ---------LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNWC---------------FKT 311 (416)
T ss_dssp ---------CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS-CCEEEEEECSSSCC---------------CCE
T ss_pred ---------eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC-CccceeecCCCCce---------------EEE
Confidence 33 5668999999999 999999976 49999999997 88888888887653 389
Q ss_pred EEcCCC-CEEEEEeCCCcEEEEecCCCceeeee----------------------------------ecCCCcceeEEEE
Q 010256 405 CLSGDG-GRVATGSYSNLFRVFGCSEGSAESTT----------------------------------LEASKNPMRRQVQ 449 (514)
Q Consensus 405 ~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~----------------------------------~~~~~~~v~~~~~ 449 (514)
+|+|++ ++|++++.||.|++||+.+....... ...|..++..++|
T Consensus 312 ~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (416)
T 2pm9_A 312 KFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHW 391 (416)
T ss_dssp EECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEE
T ss_pred EECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEE
Confidence 999999 89999999999999999876432211 0116778889999
Q ss_pred CCCCCceeecCCCCeEEE
Q 010256 450 TPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 450 ~~~~~~l~s~s~d~~v~i 467 (514)
+|++++|++++.|+.|++
T Consensus 392 s~dg~~la~~~~d~~v~~ 409 (416)
T 2pm9_A 392 AFGGKLVQITPDGKGVSI 409 (416)
T ss_dssp ETTTEEECBCTTSSCBCC
T ss_pred eeCCeEEEEeCCCCeEEE
Confidence 999999999999999998
No 28
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.9e-39 Score=299.16 Aligned_cols=299 Identities=15% Similarity=0.203 Sum_probs=230.5
Q ss_pred eeeeeeccCCCcccccccccccc-ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceec
Q 010256 91 RYKTEFQSHEPEFDYLKSLEIEE-KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (514)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~-~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (514)
..+..+.+|. + .|.+++| +++|++|++++.|++|++||+.++.......
T Consensus 6 ~~~~~~~~h~------------~~~v~~l~~--sp~g~~las~~~D~~i~iw~~~~~~~~~~~~---------------- 55 (345)
T 3fm0_A 6 VLLGRVPAHP------------DSRCWFLAW--NPAGTLLASCGGDRRIRIWGTEGDSWICKSV---------------- 55 (345)
T ss_dssp EEEEEECCST------------TSCEEEEEE--CTTSSCEEEEETTSCEEEEEEETTEEEEEEE----------------
T ss_pred EEeeeecCCC------------CCcEEEEEE--CCCCCEEEEEcCCCeEEEEEcCCCcceeeee----------------
Confidence 4566788887 5 8999999 5678899999999999999987764321100
Q ss_pred ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE
Q 010256 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 249 (514)
...+|...|.+++|+|++++|+
T Consensus 56 ----------------------------------------------------------~~~~h~~~v~~~~~sp~g~~l~ 77 (345)
T 3fm0_A 56 ----------------------------------------------------------LSEGHQRTVRKVAWSPCGNYLA 77 (345)
T ss_dssp ----------------------------------------------------------ECSSCSSCEEEEEECTTSSEEE
T ss_pred ----------------------------------------------------------eccccCCcEEEEEECCCCCEEE
Confidence 1257889999999999999999
Q ss_pred Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceecc
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 328 (514)
+| .|++|++||+........ ..+.+|...|.+++|+|++ ++|++|+.|+.|++||++++.... .
T Consensus 78 s~s~D~~v~iw~~~~~~~~~~------~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~----~---- 142 (345)
T 3fm0_A 78 SASFDATTCIWKKNQDDFECV------TTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYE----C---- 142 (345)
T ss_dssp EEETTSCEEEEEECCC-EEEE------EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEE----E----
T ss_pred EEECCCcEEEEEccCCCeEEE------EEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeE----E----
Confidence 99 999999999985542211 1567899999999999999 899999999999999998754210 0
Q ss_pred CCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCC--ceeeeeeccccccccccccccCCccceeeEE
Q 010256 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (514)
...+.+|...|.+++|+|++++|++++. +.|++||... +. +...+.+|... |++++
T Consensus 143 -----~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~-~~~~~~~~~~~h~~~---------------v~~l~ 201 (345)
T 3fm0_A 143 -----VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE-DDWVCCATLEGHEST---------------VWSLA 201 (345)
T ss_dssp -----EEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET-TEEEEEEEECCCSSC---------------EEEEE
T ss_pred -----EEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC-CCEEEEEEecCCCCc---------------eEEEE
Confidence 1224567789999999999999999865 9999999986 43 34566666654 45999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCce--------------eeeeecC-CCcceeEEEECCCCCceeecCCCCeEEEeeC
Q 010256 406 LSGDGGRVATGSYSNLFRVFGCSEGSA--------------ESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG 470 (514)
Q Consensus 406 ~s~~~~~l~s~~~dg~i~iwd~~~~~~--------------~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~ 470 (514)
|+|+|++|++++.|+.|++|+...... ...++.+ |...|+.++|+|++..|++++.|+.|++.+.
T Consensus 202 ~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~ 281 (345)
T 3fm0_A 202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE 281 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEE
T ss_pred ECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEe
Confidence 999999999999999999999643211 1123444 8889999999999999999999999999322
Q ss_pred CC---CCccc--cCC-cccccccceEEEEEcCCC-CEEEEEe-cCcEEEEe
Q 010256 471 AD---NSALD--ANG-NAFDFSMKLLHLAWHPSE-NSIACAA-SNSLYMYY 513 (514)
Q Consensus 471 ~~---~~~~~--~~~-~~~~~~~~v~~~~~spd~-~~l~~~~-~~~~~i~~ 513 (514)
.. +.... +.. ....|...|++++|+|++ .+||+++ ++.+++|.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 282 DPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332 (345)
T ss_dssp CTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred CCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence 11 11000 001 112588999999999998 4888887 66788886
No 29
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-39 Score=311.30 Aligned_cols=335 Identities=16% Similarity=0.196 Sum_probs=251.6
Q ss_pred cccccccceEEEEEcCCCC-eEEEecCCCeEEEEEe----cCCcccCCcccccccccccccCCccceeeeee------cc
Q 010256 30 EEVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFER----TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF------QS 98 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 98 (514)
....|.+.|++++|+|+|+ +||+|+.||.|++|++ .+++..- .+. +...+...+ .+
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~---------~~~~~~~~~~~~~~~~~ 106 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYW----KLT---------IIAELRHPFALSASSGK 106 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CE----EEE---------EEEEEECCCCCC-----
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccc----ccc---------ccccccccccccccccC
Confidence 3456779999999999999 9999999999999999 6655100 000 000011111 22
Q ss_pred CCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCcee
Q 010256 99 HEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (514)
Q Consensus 99 h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (514)
|. ..|.+++| ++++.+|++++.||.|++||. +++....
T Consensus 107 ~~------------~~v~~~~~--s~~~~~l~~~~~dg~i~i~~~-~~~~~~~--------------------------- 144 (425)
T 1r5m_A 107 TT------------NQVTCLAW--SHDGNSIVTGVENGELRLWNK-TGALLNV--------------------------- 144 (425)
T ss_dssp -C------------BCEEEEEE--CTTSSEEEEEETTSCEEEEET-TSCEEEE---------------------------
T ss_pred CC------------CceEEEEE--cCCCCEEEEEeCCCeEEEEeC-CCCeeee---------------------------
Confidence 44 78999999 567889999999999999993 3321110
Q ss_pred eccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEE
Q 010256 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRIN 257 (514)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~ 257 (514)
+.+|...|.+++|+|++++|+++ .|+.|+
T Consensus 145 --------------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (425)
T 1r5m_A 145 --------------------------------------------------LNFHRAPIVSVKWNKDGTHIISMDVENVTI 174 (425)
T ss_dssp --------------------------------------------------ECCCCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred --------------------------------------------------ccCCCccEEEEEECCCCCEEEEEecCCeEE
Confidence 24677889999999999999999 899999
Q ss_pred EEeccCCCceeeeeccCCCcccccCCc---------------eEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccc
Q 010256 258 LWNLEISNQSFNIVDVKPANMEDLTEV---------------ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (514)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~~~~~~~~~---------------i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 322 (514)
+||+++++....+ ..+... +.++.|+|++ .+++++.++.|++||+++++..
T Consensus 175 iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~---- 240 (425)
T 1r5m_A 175 LWNVISGTVMQHF--------ELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPT---- 240 (425)
T ss_dssp EEETTTTEEEEEE--------CCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCS----
T ss_pred EEECCCCcEEEEe--------eccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCcee----
Confidence 9999866544322 223333 8899999986 6889999999999999887542
Q ss_pred cceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccce
Q 010256 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (514)
.. +..|...|.+++|+|++++|++++ ++.|++||+.. ++.+..+..|... +
T Consensus 241 ~~------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~---------------i 292 (425)
T 1r5m_A 241 GK------------LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQNCFYGHSQS---------------I 292 (425)
T ss_dssp EE------------ECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSCSEEECCCSSC---------------E
T ss_pred ee------------eccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CccceEecCCCcc---------------E
Confidence 22 344667899999999999999986 49999999997 7777777766554 4
Q ss_pred eeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCC-------
Q 010256 402 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNS------- 474 (514)
Q Consensus 402 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~------- 474 (514)
.+++|+|++ +|++++.|+.|++||+.+++ ....+..|..++..+.|+|++++|++++.|+.|++++-....
T Consensus 293 ~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 370 (425)
T 1r5m_A 293 VSASWVGDD-KVISCSMDGSVRLWSLKQNT-LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLY 370 (425)
T ss_dssp EEEEEETTT-EEEEEETTSEEEEEETTTTE-EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC------
T ss_pred EEEEECCCC-EEEEEeCCCcEEEEECCCCc-EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeee
Confidence 489999999 99999999999999999874 457888999999999999999999999999999993221100
Q ss_pred ----------ccccCCccccccc--ceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 475 ----------ALDANGNAFDFSM--KLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 475 ----------~~~~~~~~~~~~~--~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
..........|.. .|++++|+|++++|++++ ++.+++|.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 371 GNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp --------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred cccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence 0001222234554 999999999999999887 55688886
No 30
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.3e-39 Score=336.70 Aligned_cols=362 Identities=15% Similarity=0.172 Sum_probs=282.6
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|.
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-----------------------~~~~~~~~~---------- 55 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-----------------------EVRSIQVTE---------- 55 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----------------------EEEEEECCS----------
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----------------------eEEEEecCC----------
Confidence 35899999999999999999999999999999987765 346677887
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++|+ +++.+|++++.||.|++||+.+++.......+ .+.+. .++|+|+++.+
T Consensus 56 --~~v~~~~~s--~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~--------~~~v~-------~~~~s~~~~~l---- 112 (814)
T 3mkq_A 56 --TPVRAGKFI--ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH--------PDYIR-------SIAVHPTKPYV---- 112 (814)
T ss_dssp --SCEEEEEEE--GGGTEEEEEETTSEEEEEETTTCCEEEEEECC--------SSCEE-------EEEECSSSSEE----
T ss_pred --CcEEEEEEe--CCCCEEEEEeCCCeEEEEECCCCcEEEEEecC--------CCCEE-------EEEEeCCCCEE----
Confidence 889999995 56779999999999999999998876665544 24454 88999999988
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
++++.++.|++|+ +.... .... .+.+|...|.+++|+| ++..|+++ .|+.|++||+.......
T Consensus 113 --------~~~~~dg~i~vw~-~~~~~-----~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~ 177 (814)
T 3mkq_A 113 --------LSGSDDLTVKLWN-WENNW-----ALEQ-TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177 (814)
T ss_dssp --------EEEETTSEEEEEE-GGGTS-----EEEE-EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSE
T ss_pred --------EEEcCCCEEEEEE-CCCCc-----eEEE-EEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccee
Confidence 9999999999999 32211 1122 2378999999999999 88899999 99999999998665443
Q ss_pred eeeccCCCcccccCCceEEEEEec--CCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p--~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
.+ ...+...+.+++|+| ++ .++++++.||.|++||+++++.. .. +.+|...|.+
T Consensus 178 ~~-------~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~----~~------------~~~~~~~v~~ 233 (814)
T 3mkq_A 178 TL-------TTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSCV----AT------------LEGHMSNVSF 233 (814)
T ss_dssp EE-------ECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTEEE----EE------------EECCSSCEEE
T ss_pred EE-------ecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcEE----EE------------EcCCCCCEEE
Confidence 32 123447899999999 87 89999999999999999887652 22 4456688999
Q ss_pred EEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC--EEEEEeCCCcEE
Q 010256 347 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG--RVATGSYSNLFR 423 (514)
Q Consensus 347 ~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~ 423 (514)
++|+|+++++++++. |.|++||+.+ ++.+..+..+... +.+++|+|++. ++++ +.|+.+.
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~~~~~---------------v~~~~~~~~~~~~~~~~-~~~~~~~ 296 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSST-YKVEKTLNVGLER---------------SWCIATHPTGRKNYIAS-GFDNGFT 296 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTT-CSEEEEECCSSSS---------------EEEEEECTTCGGGEEEE-EETTEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEeecCCCc---------------EEEEEEccCCCceEEEE-EeCCCEE
Confidence 999999999999864 9999999997 7888877766543 44899999987 4554 4567788
Q ss_pred EEecCCCceee------------------------------------------eeecCCCcceeEEEECCCCCceeecCC
Q 010256 424 VFGCSEGSAES------------------------------------------TTLEASKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 424 iwd~~~~~~~~------------------------------------------~~~~~~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
+|++....... ..+..+...+..++|+|+++++++++
T Consensus 297 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~- 375 (814)
T 3mkq_A 297 VLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG- 375 (814)
T ss_dssp EEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-
T ss_pred EEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-
Confidence 88876432110 11233455678999999999999998
Q ss_pred CCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEec-CcEEEEe
Q 010256 462 SGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-NSLYMYY 513 (514)
Q Consensus 462 d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~-~~~~i~~ 513 (514)
|+.+.+++-. .....+.+.|.+++|+||+++||+++. +.+.+|.
T Consensus 376 ~~~~~i~~~~--------~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~ 420 (814)
T 3mkq_A 376 DGEYVIYTAL--------AWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYK 420 (814)
T ss_dssp TTEEEEEETT--------TTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEE
T ss_pred CCEEEEEECc--------cccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEE
Confidence 8999884321 111224578889999999999998874 4577773
No 31
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.9e-39 Score=297.76 Aligned_cols=302 Identities=14% Similarity=0.189 Sum_probs=233.1
Q ss_pred ccccccceEEEEEcCC-CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~-g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
..+|.+.|++|+|+|+ +++||||+.||+|+|||+.+.+.. .......+.+|.
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~------------------~~~~~~~l~~h~--------- 86 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN------------------YGIPQRALRGHS--------- 86 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC------------------SEEEEEEECCCS---------
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc------------------cceeeEEEeCCC---------
Confidence 4589999999999997 689999999999999999866532 223456788898
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.+++| ++++++|++++.|+.|++|+.............. ..+. ...++++++.+
T Consensus 87 ---~~V~~~~~--s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~--------~~~~-------~~~~~~~~~~l--- 143 (340)
T 4aow_A 87 ---HFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHT--------KDVL-------SVAFSSDNRQI--- 143 (340)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS--------SCEE-------EEEECTTSSCE---
T ss_pred ---CCEEEEEE--CCCCCEEEEEcccccceEEeecccceeeeecCCC--------Ccee-------EEEEeecCccc---
Confidence 88999999 6688899999999999999999887665554432 1222 56778888887
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC--CEEEEe-cCCeEEEEeccCCCc
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQ 266 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~~ 266 (514)
++++.|+.+++|| ..... .......+|...+..++|++++ .+++++ .|+.|++||+++.+.
T Consensus 144 ---------~s~s~d~~~~~~d-~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~ 207 (340)
T 4aow_A 144 ---------VSGSRDKTIKLWN-TLGVC------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 207 (340)
T ss_dssp ---------EEEETTSCEEEEC-TTSCE------EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE
T ss_pred ---------eeecCCCeEEEEE-eCCCc------eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce
Confidence 9999999999999 32211 1122236889999999998864 567777 899999999986554
Q ss_pred eeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
.. .+.+|...|++++|+|++ ++|++|+.|+.|++||+++.+.. ..+.. ...|.+
T Consensus 208 ~~--------~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~----~~~~~-------------~~~v~~ 261 (340)
T 4aow_A 208 KT--------NHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKHL----YTLDG-------------GDIINA 261 (340)
T ss_dssp EE--------EECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE----EEEEC-------------SSCEEE
T ss_pred ee--------EecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCcee----eeecC-------------CceEEe
Confidence 33 456789999999999999 89999999999999999987652 33322 257999
Q ss_pred EEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEe
Q 010256 347 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (514)
Q Consensus 347 ~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 426 (514)
+.|+|++.+++++.++.|++||++. +..+..+..+..... .......|++++|+|||++|++|+.||.|+|||
T Consensus 262 ~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~------~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 262 LCFSPNRYWLCAATGPSIKIWDLEG-KIIVDELKQEVISTS------SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEECSSSSEEEEEETTEEEEEETTT-TEEEEEECCC-------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eecCCCCceeeccCCCEEEEEECCC-CeEEEeccccceeee------ccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 9999999888888899999999986 555555443221100 001112366999999999999999999999999
Q ss_pred cCCCc
Q 010256 427 CSEGS 431 (514)
Q Consensus 427 ~~~~~ 431 (514)
+++|.
T Consensus 335 ~~tGt 339 (340)
T 4aow_A 335 VTIGT 339 (340)
T ss_dssp EEC--
T ss_pred CCCcC
Confidence 99874
No 32
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-39 Score=296.71 Aligned_cols=295 Identities=15% Similarity=0.252 Sum_probs=215.0
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeee-cc-CCCccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QS-HEPEFDYLKS 108 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~~~~~~~ 108 (514)
..+|.+.|++++|+|+ +||+|+.|+.|++|++.++.. .....+ .+ |.
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~---------------------~~~~~~~~~~h~-------- 58 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF---------------------TLIDVLDETAHK-------- 58 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC---------------------EEEEEECTTCCC--------
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe---------------------EEEEEEecCCcc--------
Confidence 3479999999999987 999999999999999875431 122333 33 76
Q ss_pred cccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
..|.+++| ++++.+|++++.|++|++|++....... ..
T Consensus 59 ----~~v~~v~~--sp~~~~las~s~D~~v~iw~~~~~~~~~---~~--------------------------------- 96 (330)
T 2hes_X 59 ----KAIRSVAW--RPHTSLLAAGSFDSTVSIWAKEESADRT---FE--------------------------------- 96 (330)
T ss_dssp ----SCEEEEEE--CTTSSEEEEEETTSCEEEEEC----------CC---------------------------------
T ss_pred ----CCEEEEEE--CCCCCEEEEEeCCCcEEEEEcccCcCcc---cc---------------------------------
Confidence 88999999 5677899999999999999986432000 00
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
..+... +.+|...|.+++|+|++++|++| .|++|++||++.....
T Consensus 97 ---------------------------------~~~~~~-~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 97 ---------------------------------MDLLAI-IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp ---------------------------------CEEEEE-EC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC
T ss_pred ---------------------------------ceeEEE-EcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC
Confidence 000111 36899999999999999999999 9999999999543322
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
...+ ..+.+|...|.+++|+|++ .+|++|+.|+.|++||++++... .+ ..+.+|...|.++
T Consensus 143 ~~~~----~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~--~~------------~~~~~h~~~v~~~ 203 (330)
T 2hes_X 143 YECI----SVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWE--CV------------AVLNGHEGTVWSS 203 (330)
T ss_dssp CEEE----EEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEE--EE------------EEECCCSSCEEEE
T ss_pred eEEE----EEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCee--EE------------EEccCCCCcEEEE
Confidence 1111 1467799999999999998 89999999999999998765210 01 2356677899999
Q ss_pred EEecC--CCEEEEEe-CCeEEEEEccCCC-------Cceeeeee-ccccccccccccccCCccceeeEEEcCCCCEEEEE
Q 010256 348 KFARN--GRHILSRD-YMTLKLWDINMDS-------GPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 416 (514)
Q Consensus 348 ~~s~~--g~~l~~~~-~~~i~iwd~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 416 (514)
+|+|+ +.+|++++ |++|++||+.... .....+.. |.. .|.+++|++++ +|+++
T Consensus 204 ~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~---------------~v~~v~~s~~~-~l~s~ 267 (330)
T 2hes_X 204 DFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR---------------QVYNVAWGFNG-LIASV 267 (330)
T ss_dssp EECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS---------------CEEEEEECTTS-CEEEE
T ss_pred EecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc---------------ceEEEEEcCCC-EEEEE
Confidence 99998 77888876 5999999997521 11122221 222 25599999665 79999
Q ss_pred eCCCcEEEEecCCCcee--eeeecCCCc-ceeEEEECC--CCCceeecCCCCeEEE
Q 010256 417 SYSNLFRVFGCSEGSAE--STTLEASKN-PMRRQVQTP--SRPSRPLGSLSGVVRR 467 (514)
Q Consensus 417 ~~dg~i~iwd~~~~~~~--~~~~~~~~~-~v~~~~~~~--~~~~l~s~s~d~~v~i 467 (514)
+.||.|++|+..++... ...+.+|.. .|..++|+| ++++|++++.|++|++
T Consensus 268 ~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~ 323 (330)
T 2hes_X 268 GADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF 323 (330)
T ss_dssp ETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEE
T ss_pred eCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEE
Confidence 99999999999876422 233467877 899999999 7899999999999999
No 33
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9.9e-40 Score=304.17 Aligned_cols=244 Identities=10% Similarity=0.106 Sum_probs=187.4
Q ss_pred ccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010256 230 HAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~ 309 (514)
.+|...|.+++|+|++.+++++.||+|++||+.+++..... .....+|...|++++|+|++ ++|++|+.|+.|++
T Consensus 91 ~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~----~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~i 165 (357)
T 4g56_B 91 VQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVN----KFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKV 165 (357)
T ss_dssp EECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCC----CEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEE
T ss_pred CCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEE----eeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEE
Confidence 46778899999999997776669999999999866543211 11345789999999999999 89999999999999
Q ss_pred EEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCC-EEEEEe-CCeEEEEEccCCCCceeeeeecccccc
Q 010256 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP 387 (514)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (514)
||+++++.. . .+.+|...|.+++|+|++. ++++++ |++|++||+++ +++...+..+....
T Consensus 166 wd~~~~~~~----~------------~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~~- 227 (357)
T 4g56_B 166 WDLSQKAVL----K------------SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKPATRIDFCASDT- 227 (357)
T ss_dssp EETTTTEEE----E------------EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS-SSCBCBCCCTTCCS-
T ss_pred EECCCCcEE----E------------EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC-Cceeeeeeeccccc-
Confidence 999987652 2 2455678999999999875 566654 59999999987 66665554332211
Q ss_pred ccccccccCCccceeeEEEcCC-CCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCC-CceeecCCCCeE
Q 010256 388 KLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVV 465 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~v 465 (514)
.+.+++|+|+ +.+|++|+.|+.|++||+.+++ ...++.+|..+|.+++|+|++ ++|++++.|++|
T Consensus 228 ------------~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i 294 (357)
T 4g56_B 228 ------------IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD-SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTV 294 (357)
T ss_dssp ------------CEEEEEECTTSTTEEEEEESSSCEEEEESSCGG-GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred ------------cccchhhhhcccceEEEeecccceeEEECCCCc-EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEE
Confidence 1458999997 4689999999999999999874 447899999999999999987 689999999999
Q ss_pred EEeeCCCCCccccCCcccccccceEEEEEcC-CCCEEEEEe-cCcEEEEe
Q 010256 466 RRVKGADNSALDANGNAFDFSMKLLHLAWHP-SENSIACAA-SNSLYMYY 513 (514)
Q Consensus 466 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-d~~~l~~~~-~~~~~i~~ 513 (514)
++.+.. ..+. ....+|.+.|++++|+| |+++|++++ ++.+++|.
T Consensus 295 ~iwd~~---~~~~-~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 295 AVLDAD---FSEV-FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp EEECTT---SCEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEECC---CCcE-eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 994322 1111 12346899999999999 799999887 67789986
No 34
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.7e-39 Score=305.89 Aligned_cols=314 Identities=14% Similarity=0.258 Sum_probs=229.4
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCc------ccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPE------FDY 105 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~------~~~ 105 (514)
.+|.+.|+|++|+|||++||+|+ ++.++||++.+++.. ..+..|... +..
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~-----------------------~~l~~~~~~~~~~~~~~~ 116 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV-----------------------ARLSDDSAANKDPENLNT 116 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE-----------------------EEECC-------------
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEE-----------------------EEecCccccccccccccc
Confidence 46999999999999999999987 678999999877642 122222100 000
Q ss_pred ccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 106 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
.........|.+++| ++++++|++++.|+.|++||+.+++.......+ ...|. .++|+|+++.
T Consensus 117 ~~~~~~~~~v~~v~~--s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h--------~~~v~-------~~~~~p~~~~ 179 (393)
T 1erj_A 117 SSSPSSDLYIRSVCF--SPDGKFLATGAEDRLIRIWDIENRKIVMILQGH--------EQDIY-------SLDYFPSGDK 179 (393)
T ss_dssp ----CCCCBEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--------SSCEE-------EEEECTTSSE
T ss_pred cccCCCceeEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcEEEEEccC--------CCCEE-------EEEEcCCCCE
Confidence 000011145999999 568889999999999999999999876665544 23455 8899999999
Q ss_pred cccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccC
Q 010256 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEI 263 (514)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~ 263 (514)
+ ++++.|+.|++|| +...+ +... ..+...+.+++|+| ++++|++| .|+.|++||+++
T Consensus 180 l------------~s~s~d~~v~iwd-~~~~~------~~~~--~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~ 238 (393)
T 1erj_A 180 L------------VSGSGDRTVRIWD-LRTGQ------CSLT--LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238 (393)
T ss_dssp E------------EEEETTSEEEEEE-TTTTE------EEEE--EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred E------------EEecCCCcEEEEE-CCCCe------eEEE--EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 8 9999999999999 33221 1222 24567899999999 89999999 999999999986
Q ss_pred CCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccc
Q 010256 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (514)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (514)
+.....+ ........+|...|.+++|+|++ .+|++|+.|+.|++||+++...... ............+.+|...
T Consensus 239 ~~~~~~~-~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~----~~~~~~~~~~~~~~~h~~~ 312 (393)
T 1erj_A 239 GFLVERL-DSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSD----SKTPNSGTCEVTYIGHKDF 312 (393)
T ss_dssp CCEEEEE-C------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC-------------------CEEEEEECCSSC
T ss_pred CcEEEee-cccccCCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCccc----ccCCCCCcceEEEecccCc
Confidence 6543222 11112335789999999999999 8999999999999999987543211 1111111112346678899
Q ss_pred eeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC------CCCEEEEE
Q 010256 344 ISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG------DGGRVATG 416 (514)
Q Consensus 344 i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~ 416 (514)
|.+++|+|++++|++|+. +.|++||+.+ ++++..+.+|... |.+++|++ ++++|++|
T Consensus 313 v~~~~~~~~~~~l~sgs~D~~v~iwd~~~-~~~~~~l~~h~~~---------------v~~v~~~~~~~~~p~~~~l~sg 376 (393)
T 1erj_A 313 VLSVATTQNDEYILSGSKDRGVLFWDKKS-GNPLLMLQGHRNS---------------VISVAVANGSSLGPEYNVFATG 376 (393)
T ss_dssp EEEEEECGGGCEEEEEETTSEEEEEETTT-CCEEEEEECCSSC---------------EEEEEECSSCTTCTTCEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCC-CeEEEEECCCCCC---------------EEEEEecCCcCcCCCCCEEEEE
Confidence 999999999999999865 9999999997 8888889888765 34788775 78899999
Q ss_pred eCCCcEEEEecCC
Q 010256 417 SYSNLFRVFGCSE 429 (514)
Q Consensus 417 ~~dg~i~iwd~~~ 429 (514)
+.||.|+||++..
T Consensus 377 s~Dg~i~iW~~~~ 389 (393)
T 1erj_A 377 SGDCKARIWKYKK 389 (393)
T ss_dssp ETTSEEEEEEEEE
T ss_pred CCCCcEEECcccc
Confidence 9999999999864
No 35
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.8e-39 Score=295.18 Aligned_cols=243 Identities=10% Similarity=0.089 Sum_probs=189.7
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
..|...|.+++|+|++ .|++| .||+|++||+++++...... ..+.+|...|++++|+|++ ++|++|+.|+.|+
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~----~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~ 152 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSK----FCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIK 152 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEE----EEEECCSSCEEEEEECTTS-SEEEEEETTSCEE
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEee----ccccCCCCCEEEEEECCCC-CEEEEEeCCCeEE
Confidence 3456789999999996 55666 99999999999776543221 1345799999999999999 8999999999999
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCC-EEEEEe-CCeEEEEEccCCCCceeeeeeccccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRD-YMTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
+||+++++.. . .+.+|...|.+++|+|++. +|++++ |++|++||+++ +++...+..+....
T Consensus 153 iwd~~~~~~~----~------------~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~ 215 (344)
T 4gqb_B 153 VWDLAQQVVL----S------------SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PKPASQIGCSAPGY 215 (344)
T ss_dssp EEETTTTEEE----E------------EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS-SSCEEECC----CC
T ss_pred EEECCCCcEE----E------------EEcCcCCceEEEEecCCCCCceeeeccccccccccccc-cceeeeeecceeec
Confidence 9999988752 2 2556778999999999885 677775 59999999997 77777664433211
Q ss_pred cccccccccCCccceeeEEEcCC-CCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCC-CceeecCCCCe
Q 010256 387 PKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGV 464 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~ 464 (514)
.+.+++|+|+ +++|++|+.||.|++||+.+++. ..++.+|...|++++|+|++ ++|++|+.|++
T Consensus 216 -------------~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~-~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~ 281 (344)
T 4gqb_B 216 -------------LPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC-VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS 281 (344)
T ss_dssp -------------CEEEEEECSSCTTEEEEEETTSEEEEEESCC--C-CEEEECCSSCEEEEEECSSSSCCEEEEETTSC
T ss_pred -------------cceeeeecCCCCcceEEeccCCcEEEEECCCCcE-EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe
Confidence 1448999985 57899999999999999998744 47899999999999999998 58999999999
Q ss_pred EEEeeCCCCCccccCCcccccccceEEEEEcCCCC-EEEEEe-cCcEEEEe
Q 010256 465 VRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN-SIACAA-SNSLYMYY 513 (514)
Q Consensus 465 v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~-~l~~~~-~~~~~i~~ 513 (514)
|++.+... .++ ....+|.+.|++++|+|+++ +|++++ ++.+++|.
T Consensus 282 i~vwd~~~---~~~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 282 LAVLDSSL---SEL-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp EEEECTTC---CEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEECCC---CcE-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 99943221 111 12346999999999999986 466766 77888885
No 36
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.8e-38 Score=295.41 Aligned_cols=292 Identities=13% Similarity=0.159 Sum_probs=232.1
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
...++.+|. ..|++++| ++++.+|++++.|++|++||..+++....
T Consensus 56 ~~~~l~gH~------------~~V~~~~~--s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~-------------------- 101 (354)
T 2pbi_B 56 TRRTLKGHG------------NKVLCMDW--CKDKRRIVSSSQDGKVIVWDSFTTNKEHA-------------------- 101 (354)
T ss_dssp EEEEEECCS------------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEE--------------------
T ss_pred EEEEecCCC------------CeEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCCcceE--------------------
Confidence 456788998 89999999 56788999999999999999877653221
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 251 (514)
...|...|.+++|+|++..|+++
T Consensus 102 ---------------------------------------------------------~~~~~~~v~~~~~sp~g~~lasg 124 (354)
T 2pbi_B 102 ---------------------------------------------------------VTMPCTWVMACAYAPSGCAIACG 124 (354)
T ss_dssp ---------------------------------------------------------EECSSSCCCEEEECTTSSEEEEE
T ss_pred ---------------------------------------------------------EecCCCCEEEEEECCCCCEEEEe
Confidence 13345678899999999999999
Q ss_pred -cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
.|+.+++|++......... .....+..|...|.+++|+|++ ..|++++.|+.|++||+++++.. ..
T Consensus 125 ~~d~~i~v~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~----~~------ 191 (354)
T 2pbi_B 125 GLDNKCSVYPLTFDKNENMA--AKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLL----QS------ 191 (354)
T ss_dssp STTSEEEEEECCCCTTCCSG--GGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE----EE------
T ss_pred eCCCCEEEEEEecccccccc--ccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEE----EE------
Confidence 9999999998643211000 0112456789999999999998 89999999999999999987652 22
Q ss_pred CCccceeeccccceeEEEEec--CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEc
Q 010256 331 PGTRSFFTEIIASISDIKFAR--NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~--~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (514)
+.+|...|.+++|+| ++.+|++|+ |+.|++||+++ ++++..+..|... |.+++|+
T Consensus 192 ------~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~~h~~~---------------v~~v~~~ 249 (354)
T 2pbi_B 192 ------FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFETHESD---------------VNSVRYY 249 (354)
T ss_dssp ------EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEEC
T ss_pred ------EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCC---------------eEEEEEe
Confidence 455668899999987 578999976 59999999997 8888888887754 4499999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCceeeeeecC--CCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccccc
Q 010256 408 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF 485 (514)
Q Consensus 408 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~ 485 (514)
|++++|++++.|+.|++||+..+... ..+.. +...+..+.|+|++++|++++.|+.|++++-... ........|
T Consensus 250 p~~~~l~s~s~D~~v~lwd~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~l~~h 325 (354)
T 2pbi_B 250 PSGDAFASGSDDATCRLYDLRADREV-AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG---SRVSILFGH 325 (354)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEE-EEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---SEEEEECCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEE-EEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC---ceEEEEECC
Confidence 99999999999999999999876433 34433 3457889999999999999999999999432211 122234468
Q ss_pred ccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 486 SMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 486 ~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
...|.+++|+||+++|++++ ++.+++|.
T Consensus 326 ~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 326 ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999998 55677874
No 37
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-39 Score=335.13 Aligned_cols=424 Identities=12% Similarity=0.055 Sum_probs=264.1
Q ss_pred cccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceee
Q 010256 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (514)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (514)
-+.|++... + ....+.|.+.|++++|+|++++|++|+.||.|++||+.+++.. .+. + +.....
T Consensus 81 v~lWd~~~~--~--~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-----~~~-----i---~~~~~~ 143 (902)
T 2oaj_A 81 VYVLSLYSQ--K--VLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-----SFK-----L---DNLQKS 143 (902)
T ss_dssp EEEEETTTC--S--EEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-----EEE-----E---CCHHHH
T ss_pred EEEEECCCC--c--EEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-----cce-----e---cccccc
Confidence 345776542 1 1123357789999999999999999999999999999866531 000 0 000000
Q ss_pred -eeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccc----------c
Q 010256 94 -TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA----------A 162 (514)
Q Consensus 94 -~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~----------~ 162 (514)
..+.+|. ..|.+++|+|. ++..+++++.|+.| +||+++++.......+..+... .
T Consensus 144 ~~~~~~h~------------~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 209 (902)
T 2oaj_A 144 SFFPAARL------------SPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEK 209 (902)
T ss_dssp HTCSSSCC------------CCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSC
T ss_pred ccccccCC------------CCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccc
Confidence 1235666 88999999652 34689999999999 9999999877666544211000 0
Q ss_pred CCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccc--cc------cc---c
Q 010256 163 GNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRR--IY------AH---A 231 (514)
Q Consensus 163 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~~------~~---~ 231 (514)
....|. +++|+|+|+.+ ++++.|+.|++|| +...+......... .. .. .
T Consensus 210 h~~~V~-------~v~fspdg~~l------------asgs~Dg~i~lWd-~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~ 269 (902)
T 2oaj_A 210 RTPKVI-------QSLYHPNSLHI------------ITIHEDNSLVFWD-ANSGHMIMARTVFETEINVPQPDYIRDSST 269 (902)
T ss_dssp BCCCEE-------EEEECTTSSEE------------EEEETTCCEEEEE-TTTCCEEEEECSSCSCTTSCCTTCCCCCSS
T ss_pred cCCCeE-------EEEEcCCCCEE------------EEEECCCeEEEEE-CCCCcEEEEEeecccccCCCCCcCCCCCcc
Confidence 113344 89999999998 9999999999999 43322110000000 00 00 1
Q ss_pred CccCeEEEEEC----CCC-CEEEEe-cC-----CeEEEEe----------------------------------------
Q 010256 232 HDYHINSISNN----SDG-ETFISA-DD-----LRINLWN---------------------------------------- 260 (514)
Q Consensus 232 h~~~v~~~~~~----~~~-~~l~s~-~d-----~~i~iwd---------------------------------------- 260 (514)
|...|.+++|+ |++ .+|++| .+ ..+.+|+
T Consensus 270 ~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 349 (902)
T 2oaj_A 270 NAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNIL 349 (902)
T ss_dssp CCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEE
T ss_pred ccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEE
Confidence 34457777773 332 344444 32 2455554
Q ss_pred -------------------------------ccCCCceeeee---------------------------------ccCCC
Q 010256 261 -------------------------------LEISNQSFNIV---------------------------------DVKPA 276 (514)
Q Consensus 261 -------------------------------~~~~~~~~~~~---------------------------------~~~~~ 276 (514)
+.++....... .....
T Consensus 350 ~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~ 429 (902)
T 2oaj_A 350 PIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDY 429 (902)
T ss_dssp ECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCC
T ss_pred ECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCC
Confidence 32211100000 00001
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEE
Q 010256 277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (514)
Q Consensus 277 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 356 (514)
.+.+|...+.+++|+|++ ++|++|+.|++|++||+.++.... ...+...- .+..-.+|...|.+++|+|+|++|
T Consensus 430 ~l~G~~~~v~sv~~spdg-~~laSgs~DgtVrlWd~~~g~~~~--~~~~~~~l---~~~~~~~h~~~V~svafspdg~~L 503 (902)
T 2oaj_A 430 LLKGGVRTKRQKLPAEYG-TAFITGHSNGSVRIYDASHGDIQD--NASFEVNL---SRTLNKAKELAVDKISFAAETLEL 503 (902)
T ss_dssp SCCCSBCCCCCCCCCSEE-EEEEEEETTSEEEEEESSCCTTTT--TBCEEEEH---HHHTTCSSSCCEEEEEEETTTTEE
T ss_pred cccCCcCCCCcccccccC-cEEEEecCCCcEEEEECCCccccC--CceEEeec---hhhcCCCCCCceeEEEecCCCCeE
Confidence 122333344445567888 899999999999999998874311 11111000 000012677899999999999999
Q ss_pred EEEeC-CeEEEEEccCCCCc---------------------------------------------eeeeeeccccccccc
Q 010256 357 LSRDY-MTLKLWDINMDSGP---------------------------------------------VATFQVHEHLRPKLC 390 (514)
Q Consensus 357 ~~~~~-~~i~iwd~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~ 390 (514)
|+|+. ++|+|||+.. ++. +..+.+|..
T Consensus 504 Asgs~DgtV~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~------ 576 (902)
T 2oaj_A 504 AVSIETGDVVLFKYEV-NQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG------ 576 (902)
T ss_dssp EEEETTSCEEEEEEEE-CCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC------
T ss_pred EEEecCcEEEEEEecC-ccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC------
Confidence 99865 9999999986 321 222333332
Q ss_pred cccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceee----eeec-CCCcceeEEEEC-----CCC---Ccee
Q 010256 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES----TTLE-ASKNPMRRQVQT-----PSR---PSRP 457 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~-~~~~~v~~~~~~-----~~~---~~l~ 457 (514)
.|++++|+||| +||+|+.|+.|+|||+++..... ..+. +|...|++++|+ ||+ ++|+
T Consensus 577 ---------~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~ 646 (902)
T 2oaj_A 577 ---------KTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMV 646 (902)
T ss_dssp ---------SEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEE
T ss_pred ---------cEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEE
Confidence 35699999999 99999999999999998653321 1333 899999999999 885 8999
Q ss_pred ecCCCCeEEEeeC-----CCCCccccCCc-ccccccceEEEE-Ec----------------------CCCCEEEEEecCc
Q 010256 458 LGSLSGVVRRVKG-----ADNSALDANGN-AFDFSMKLLHLA-WH----------------------PSENSIACAASNS 508 (514)
Q Consensus 458 s~s~d~~v~i~~~-----~~~~~~~~~~~-~~~~~~~v~~~~-~s----------------------pd~~~l~~~~~~~ 508 (514)
+|+.|++|++++- .+.. ..+.+. ...+.+.|..++ |+ +++.+|++ +++.
T Consensus 647 sgs~D~tv~~wd~~p~~~g~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~-~~~~ 724 (902)
T 2oaj_A 647 CGTDMGEVITYKILPASGGKFD-VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLIT-GFDD 724 (902)
T ss_dssp EEETTSEEEEEEEEECGGGCEE-EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEE-CSSE
T ss_pred EEecCCcEEEEEEecCCCCcEE-EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEE-eccc
Confidence 9999999999321 1111 011110 112356777777 66 55555554 4888
Q ss_pred EEEEe
Q 010256 509 LYMYY 513 (514)
Q Consensus 509 ~~i~~ 513 (514)
++||.
T Consensus 725 ir~~~ 729 (902)
T 2oaj_A 725 IRLIT 729 (902)
T ss_dssp EEEEC
T ss_pred eEEEe
Confidence 99996
No 38
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.2e-37 Score=285.62 Aligned_cols=294 Identities=20% Similarity=0.328 Sum_probs=235.6
Q ss_pred CCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCc
Q 010256 86 RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG 165 (514)
Q Consensus 86 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
..|.+.....+.+|. ..|++++| ++++++|++++.|+.|++|++.+++....
T Consensus 9 ~~~~~~~~~~~~gh~------------~~v~~~~~--s~~~~~l~s~~~dg~i~iw~~~~~~~~~~-------------- 60 (312)
T 4ery_A 9 VKPNYALKFTLAGHT------------KAVSSVKF--SPNGEWLASSSADKLIKIWGAYDGKFEKT-------------- 60 (312)
T ss_dssp CCCCCEEEEEECCCS------------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEE--------------
T ss_pred CCCCceeEEEEcccC------------CcEEEEEE--CCCCCEEEEeeCCCeEEEEeCCCcccchh--------------
Confidence 446677778899998 88999999 56788999999999999999877653221
Q ss_pred ceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC
Q 010256 166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG 245 (514)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 245 (514)
+.+|...|.+++|+|++
T Consensus 61 ---------------------------------------------------------------~~~h~~~v~~~~~~~~~ 77 (312)
T 4ery_A 61 ---------------------------------------------------------------ISGHKLGISDVAWSSDS 77 (312)
T ss_dssp ---------------------------------------------------------------ECCCSSCEEEEEECTTS
T ss_pred ---------------------------------------------------------------hccCCCceEEEEEcCCC
Confidence 25677889999999999
Q ss_pred CEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccc
Q 010256 246 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (514)
Q Consensus 246 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 324 (514)
++|+++ .|+.|++||+++.+... .+.+|...|.+++|+|++ ++|++|+.|+.|++||+++++.. ..
T Consensus 78 ~~l~s~~~d~~i~vwd~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~----~~ 144 (312)
T 4ery_A 78 NLLVSASDDKTLKIWDVSSGKCLK--------TLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCL----KT 144 (312)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE--------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEE----EE
T ss_pred CEEEEECCCCEEEEEECCCCcEEE--------EEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEE----EE
Confidence 999999 99999999998665443 456789999999999998 89999999999999999887642 22
Q ss_pred eeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceee
Q 010256 325 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
+..|..+|.+++|+|++++|++++. +.|++||+++ ++.+..+..+... .+..
T Consensus 145 ------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~--------------~~~~ 197 (312)
T 4ery_A 145 ------------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNP--------------PVSF 197 (312)
T ss_dssp ------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCSSCC--------------CEEE
T ss_pred ------------ecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeeEEeccCCC--------------ceEE
Confidence 3456678999999999999999865 9999999987 6666555332211 1347
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCccee---EEEECCCCCceeecCCCCeEEEeeCCCCCccccCC
Q 010256 404 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR---RQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG 480 (514)
Q Consensus 404 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~ 480 (514)
++|+|++++|++++.||.|++||+.+++ ....+.+|..... .....+++++|++|+.|+.|++.+- ...+...
T Consensus 198 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~---~~~~~~~ 273 (312)
T 4ery_A 198 VKFSPNGKYILAATLDNTLKLWDYSKGK-CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL---QTKEIVQ 273 (312)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTTE-EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEET---TTCCEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCc-EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEEC---CCchhhh
Confidence 9999999999999999999999999874 4467777765533 3334578899999999999999432 2222333
Q ss_pred cccccccceEEEEEcCCCCEEEEEe---cCcEEEEeC
Q 010256 481 NAFDFSMKLLHLAWHPSENSIACAA---SNSLYMYYA 514 (514)
Q Consensus 481 ~~~~~~~~v~~~~~spd~~~l~~~~---~~~~~i~~~ 514 (514)
....|...|.+++|+|++++|++++ ++.+.+|..
T Consensus 274 ~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 274 KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred hhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 4446899999999999999999886 678999963
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.2e-38 Score=295.78 Aligned_cols=325 Identities=12% Similarity=0.131 Sum_probs=252.9
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
.|.+.|.+++|+|||++++++..++.+.+|...... ......+|.
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~h~------------ 51 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA-----------------------RQINTLNHG------------ 51 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE-----------------------EEEEEECCS------------
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCcc-----------------------ccceeccCC------------
Confidence 467889999999999999998877766665432211 122334676
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.+++| +++++++++++ ||.|++||+.+++....
T Consensus 52 ~~v~~~~~--~~~~~~l~~~~-dg~i~iw~~~~~~~~~~----------------------------------------- 87 (337)
T 1gxr_A 52 EVVCAVTI--SNPTRHVYTGG-KGCVKVWDISHPGNKSP----------------------------------------- 87 (337)
T ss_dssp SCCCEEEE--CSSSSEEEEEC-BSEEEEEETTSTTCCSC-----------------------------------------
T ss_pred CceEEEEE--ecCCcEEEEcC-CCeEEEEECCCCCceee-----------------------------------------
Confidence 88999999 56778999988 99999999986531000
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+.. ....+|...|.+++|+|++++|+++ .|+.|++||+++.+.....
T Consensus 88 --------------~~~-----------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~- 135 (337)
T 1gxr_A 88 --------------VSQ-----------------LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA- 135 (337)
T ss_dssp --------------SEE-----------------EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE-
T ss_pred --------------eec-----------------ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee-
Confidence 000 0013677899999999999999999 8999999999866532221
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.+..|...+.+++|+|++ +++++++.||.|++||+++++.. .. +..|...|.+++|+|
T Consensus 136 -----~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~----~~------------~~~~~~~i~~~~~~~ 193 (337)
T 1gxr_A 136 -----ELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLV----RQ------------FQGHTDGASCIDISN 193 (337)
T ss_dssp -----EEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EE------------ECCCSSCEEEEEECT
T ss_pred -----ecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCcee----ee------------eecccCceEEEEECC
Confidence 456688899999999998 89999999999999999987652 22 344667899999999
Q ss_pred CCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 352 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 352 ~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
++++|++++. +.|++||++. ++.+..+.. ... +.+++|+|++++|++++.|+.|++||+.++
T Consensus 194 ~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~-~~~---------------v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~ 256 (337)
T 1gxr_A 194 DGTKLWTGGLDNTVRSWDLRE-GRQLQQHDF-TSQ---------------IFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTT-TEEEEEEEC-SSC---------------EEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred CCCEEEEEecCCcEEEEECCC-CceEeeecC-CCc---------------eEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 9999999764 9999999987 666555532 211 348999999999999999999999999876
Q ss_pred ceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcE
Q 010256 431 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSL 509 (514)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~ 509 (514)
.. ..+..|..++..+.|+|++++|++++.|+.+++++-.... .. ....+...|.+++|+|++++|++++ ++.+
T Consensus 257 ~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~---~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 257 DK--YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA---SI-FQSKESSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp CE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EE-EEEECSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred Ce--EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe---EE-EEecCCCcEEEEEECCCCCEEEEecCCCeE
Confidence 43 5778999999999999999999999999999994332211 11 2235788999999999999999887 5568
Q ss_pred EEEe
Q 010256 510 YMYY 513 (514)
Q Consensus 510 ~i~~ 513 (514)
.+|.
T Consensus 331 ~iw~ 334 (337)
T 1gxr_A 331 TVYE 334 (337)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 40
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.3e-38 Score=304.88 Aligned_cols=333 Identities=12% Similarity=0.180 Sum_probs=250.2
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
+.+++++|+|+|++|++|+.||.|++||+.+++.. ..+..|. .+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~-----------------------~~~~~~~-------------~~ 100 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS-----------------------KMLKRAD-------------YT 100 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETT-----------------------TTSCSCC-------------EE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEeccccee-----------------------eEEecCC-------------ce
Confidence 44668999999999999999999999998766532 1222332 23
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
....| ++++.+|++++.|+.|++||+.+++....
T Consensus 101 ~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------------------------------------- 134 (420)
T 3vl1_A 101 AVDTA--KLQMRRFILGTTEGDIKVLDSNFNLQREI-------------------------------------------- 134 (420)
T ss_dssp EEEEE--CSSSCEEEEEETTSCEEEECTTSCEEEEE--------------------------------------------
T ss_pred EEEEE--ecCCCEEEEEECCCCEEEEeCCCcceeee--------------------------------------------
Confidence 33355 56778999999999999999987653211
Q ss_pred CcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccC
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~ 274 (514)
+.+|...|.+++|+|++++|+++ .|++|++||+++.+...
T Consensus 135 ---------------------------------~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~------ 175 (420)
T 3vl1_A 135 ---------------------------------DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR------ 175 (420)
T ss_dssp ---------------------------------TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE------
T ss_pred ---------------------------------cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce------
Confidence 25788899999999999999999 99999999998765443
Q ss_pred CCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCc------------cceeecccc
Q 010256 275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT------------RSFFTEIIA 342 (514)
Q Consensus 275 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 342 (514)
.+.+|...|.+++|+|++ .+|++++.|+.|++||+++++.. ..+..+..... ......+..
T Consensus 176 --~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 248 (420)
T 3vl1_A 176 --TLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTI----HTFNRKENPHDGVNSIALFVGTDRQLHEISTS 248 (420)
T ss_dssp --EEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEE----EEECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred --EEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCcee----EEeecCCCCCCCccEEEEecCCcceeeecccC
Confidence 456799999999999998 89999999999999999988753 33332211000 001122345
Q ss_pred ceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeee-ccccccccccccccCCccceeeEEEcCCCC-EEEEEeCC
Q 010256 343 SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYS 419 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d 419 (514)
.+.+++|+|++++|++++. +.|++||+++ ++.+..+.. |... +.+++|+|+++ +|++|+.|
T Consensus 249 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~l~~g~~d 312 (420)
T 3vl1_A 249 KKNNLEFGTYGKYVIAGHVSGVITVHNVFS-KEQTIQLPSKFTCS---------------CNSLTVDGNNANYIYAGYEN 312 (420)
T ss_dssp CCCTTCSSCTTEEEEEEETTSCEEEEETTT-CCEEEEECCTTSSC---------------EEEEEECSSCTTEEEEEETT
T ss_pred cccceEEcCCCCEEEEEcCCCeEEEEECCC-CceeEEcccccCCC---------------ceeEEEeCCCCCEEEEEeCC
Confidence 6777788999999999865 9999999997 665555533 3322 45999999999 99999999
Q ss_pred CcEEEEecCCCceeeeeecC-CCcceeEEEECCCCCceeecCCCCeEEEeeCCC---CCcc---ccCCcccccccceEEE
Q 010256 420 NLFRVFGCSEGSAESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD---NSAL---DANGNAFDFSMKLLHL 492 (514)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~---~~~~---~~~~~~~~~~~~v~~~ 492 (514)
|.|++||+.+++.....+.. |..++..+.+ +++++|++++.|+.|++++-.. +... ........+...|.++
T Consensus 313 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 391 (420)
T 3vl1_A 313 GMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQF 391 (420)
T ss_dssp SEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEE
T ss_pred CeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEE
Confidence 99999999987665566666 6677777754 5788999999999999933222 1100 0111233578899999
Q ss_pred EEcCCCC----EEEEEecCcEEEEe
Q 010256 493 AWHPSEN----SIACAASNSLYMYY 513 (514)
Q Consensus 493 ~~spd~~----~l~~~~~~~~~i~~ 513 (514)
+|+|+++ +++++..+.+.+|+
T Consensus 392 ~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 392 CYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp EEECCSSSSCEEEEEETTTEEEEEE
T ss_pred EEccCCCCcceEEEEcCCceEEEEe
Confidence 9999999 67777788888886
No 41
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.7e-38 Score=304.73 Aligned_cols=294 Identities=12% Similarity=0.131 Sum_probs=224.9
Q ss_pred cccccceEEEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 32 ~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.+|.+.|+||+|+| ++++||+|+.||.|+|||+.+++.. ....+.+|.
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~---------------------~~~~~~gH~---------- 164 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP---------------------TFIKGIGAG---------- 164 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC---------------------EEECCCSSS----------
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce---------------------eEEEccCCC----------
Confidence 46888999999999 5679999999999999998766532 334567887
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|++|+|+| .++.+|++++.||+|++||++++........
T Consensus 165 --~~V~~l~f~p-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------------------------------------ 205 (435)
T 4e54_B 165 --GSITGLKFNP-LNTNQFYASSMEGTTRLQDFKGNILRVFASS------------------------------------ 205 (435)
T ss_dssp --CCCCEEEECS-SCTTEEEEECSSSCEEEEETTSCEEEEEECC------------------------------------
T ss_pred --CCEEEEEEeC-CCCCEEEEEeCCCEEEEeeccCCceeEEecc------------------------------------
Confidence 8899999965 3567999999999999999987653322111
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
..+...+.+++|+|++++|++| .||.|++||++. +..
T Consensus 206 ---------------------------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~-- 243 (435)
T 4e54_B 206 ---------------------------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KEL-- 243 (435)
T ss_dssp ---------------------------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBC--
T ss_pred ---------------------------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-cee--
Confidence 1233456789999999999999 999999999973 322
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
..+.+|...|.+++|+|++..+|++|+.|+.|++||+++.+.... + ....+|...|++++|
T Consensus 244 ------~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~----~---------~~~~~h~~~v~~~~~ 304 (435)
T 4e54_B 244 ------WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS----F---------LYSLPHRHPVNAACF 304 (435)
T ss_dssp ------CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC----C---------SBCCBCSSCEEECCB
T ss_pred ------EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce----E---------EEeeeccccccceeE
Confidence 256789999999999999867899999999999999988654211 1 113457789999999
Q ss_pred ecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe-----------
Q 010256 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS----------- 417 (514)
Q Consensus 350 s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----------- 417 (514)
+|+|++|++++ |+.|+|||+.. +.....+..|........ ......|+|++.++++++
T Consensus 305 spdg~~l~s~~~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 374 (435)
T 4e54_B 305 SPDGARLLTTDQKSEIRVYSASQ-WDCPLGLIPHPHRHFQHL---------TPIKAAWHPRYNLIVVGRYPDPNFKSCTP 374 (435)
T ss_dssp CTTSSEEEEEESSSCEEEEESSS-SSSEEEECCCCCCCCSSS---------CCCBCEECSSSSCEEEECCCCTTSCCSST
T ss_pred CCCCCeeEEEcCCCEEEEEECCC-CccceEEecccccccccc---------eeEEEEEcCCCCEEEEEEcCCCCeEEEEe
Confidence 99999999976 59999999997 777776666543211000 011455666666555543
Q ss_pred -CCCcEEEEecCCCceeeeeecCCCcceeEE-EECCCCCceeecCCCCeEEE
Q 010256 418 -YSNLFRVFGCSEGSAESTTLEASKNPMRRQ-VQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 418 -~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s~s~d~~v~i 467 (514)
.++.|++||..+++.......+|...|.++ +|+|++++|++|+ |+.|++
T Consensus 375 ~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~i 425 (435)
T 4e54_B 375 YELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILI 425 (435)
T ss_dssp TCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEE
T ss_pred cCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEE
Confidence 346799999999866545556888889887 6999999999987 788999
No 42
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.6e-38 Score=286.77 Aligned_cols=294 Identities=17% Similarity=0.215 Sum_probs=226.7
Q ss_pred ceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceec
Q 010256 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (514)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (514)
..+..++.+|. +.|++++|+|. ++.+|++++.|++|++|++.......
T Consensus 7 ~~l~~~l~gH~------------~~V~~l~~~~~-~~~~l~s~s~D~~v~~W~~~~~~~~~------------------- 54 (319)
T 3frx_A 7 LVLRGTLEGHN------------GWVTSLATSAG-QPNLLLSASRDKTLISWKLTGDDQKF------------------- 54 (319)
T ss_dssp EEEEEEECCCS------------SCEEEEEECSS-CTTEEEEEETTSEEEEEEEEEETTEE-------------------
T ss_pred EEEEEEEcccc------------ceEEEEEccCC-CccEEEEecCCccEEEecCCCCCccc-------------------
Confidence 44667889998 89999999642 34699999999999999986431000
Q ss_pred ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE
Q 010256 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 249 (514)
..+... +.+|...|.+++|+|++++|+
T Consensus 55 ----------------------------------------------------~~~~~~-~~~h~~~v~~~~~s~dg~~l~ 81 (319)
T 3frx_A 55 ----------------------------------------------------GVPVRS-FKGHSHIVQDCTLTADGAYAL 81 (319)
T ss_dssp ----------------------------------------------------EEEEEE-EECCSSCEEEEEECTTSSEEE
T ss_pred ----------------------------------------------------cccceE-EeCCcccEEEEEECCCCCEEE
Confidence 001111 368999999999999999999
Q ss_pred Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceecc
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 328 (514)
+| .|++|++||+++++... .+.+|...|.+++|+|++ .+|++|+.|+.|++||++.... .
T Consensus 82 s~s~D~~v~~wd~~~~~~~~--------~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~~-----~----- 142 (319)
T 3frx_A 82 SASWDKTLRLWDVATGETYQ--------RFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQCL-----A----- 142 (319)
T ss_dssp EEETTSEEEEEETTTTEEEE--------EEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSCEE-----E-----
T ss_pred EEeCCCEEEEEECCCCCeeE--------EEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeE-----E-----
Confidence 99 99999999998765443 467899999999999998 8999999999999999975321 1
Q ss_pred CCCCccceeeccccceeEEEEecC------CCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccce
Q 010256 329 EAPGTRSFFTEIIASISDIKFARN------GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~~~s~~------g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (514)
.+.+|...|.++.|+|. +..+++++ |+.|++||++. .+....+.+|... |
T Consensus 143 -------~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~---------------v 199 (319)
T 3frx_A 143 -------TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEADFIGHNSN---------------I 199 (319)
T ss_dssp -------EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT-TEEEEEECCCCSC---------------E
T ss_pred -------EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-chhheeecCCCCc---------------E
Confidence 24556688999999985 44788875 59999999987 7777777777654 4
Q ss_pred eeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEe--eCCCCCc---c
Q 010256 402 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV--KGADNSA---L 476 (514)
Q Consensus 402 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~--~~~~~~~---~ 476 (514)
.+++|+|+|++|++++.||.|++||+.+++. ...+.. ..++.+++|+|++.+|++++.++ +++. +...... .
T Consensus 200 ~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~ 276 (319)
T 3frx_A 200 NTLTASPDGTLIASAGKDGEIMLWNLAAKKA-MYTLSA-QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRP 276 (319)
T ss_dssp EEEEECTTSSEEEEEETTCEEEEEETTTTEE-EEEEEC-CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECC
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-EEEecC-CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCc
Confidence 4999999999999999999999999998744 355554 46899999999999999887654 6662 1111110 0
Q ss_pred ccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 477 DANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 477 ~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
........+...+.+++|+|||++|++++ ++.+++|+
T Consensus 277 ~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp CCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 11111223567899999999999999888 55688886
No 43
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-39 Score=310.46 Aligned_cols=338 Identities=9% Similarity=0.033 Sum_probs=232.1
Q ss_pred cccccceEEEEEcCCC---------CeEEE-------------------ecCCCeEEEEEecCCcccCCccccccccccc
Q 010256 32 VQEVDIISAIEFDKSG---------DHLAT-------------------GDRGGRVVLFERTDTRDNGGQRRDLEMMDYS 83 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g---------~~l~t-------------------g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 83 (514)
..+.+.|.+|+|+|++ ++||+ ++.|++|+||++.+++..
T Consensus 130 ~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~------------- 196 (524)
T 2j04_B 130 YNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH------------- 196 (524)
T ss_dssp EECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC-------------
T ss_pred EECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC-------------
Confidence 3457788899998876 56666 457889999999776531
Q ss_pred ccCCccceeeeeeccCCCccccccccccccceeEEEEeeC----CCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCc
Q 010256 84 MSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS----ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE 159 (514)
Q Consensus 84 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~----~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 159 (514)
......+.+|. +.|.+++|+|. +++.+|++++.||+|++||+.+++........
T Consensus 197 ------~~~~~~l~~~~------------~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~---- 254 (524)
T 2j04_B 197 ------CVKVQTIVHSF------------GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM---- 254 (524)
T ss_dssp ------EEEEEEEEECC------------CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC----
T ss_pred ------ceEEEEEEecC------------CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee----
Confidence 01123355665 77999999875 34679999999999999999765310000000
Q ss_pred cccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEE
Q 010256 160 KAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSI 239 (514)
Q Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 239 (514)
+ ..+... +.+|...|.++
T Consensus 255 -----------------------------------------------------~--------~~p~~~-l~~h~~~v~sv 272 (524)
T 2j04_B 255 -----------------------------------------------------C--------EKPSLT-LSLADSLITTF 272 (524)
T ss_dssp -----------------------------------------------------C--------CSCSEE-ECCTTTCEEEE
T ss_pred -----------------------------------------------------e--------cCceEE-EEcCCCCEEEE
Confidence 0 000111 36788999999
Q ss_pred EECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEE--EEecCCCcEEEEEecCCeEEEEEcCCCc
Q 010256 240 SNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA--EFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (514)
Q Consensus 240 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v--~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 316 (514)
+|++++ .|++| .||+|++||++++..... .+.+|...|+++ .|+|++.++|++|+.|++|+|||+++++
T Consensus 273 ~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~-------~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~ 344 (524)
T 2j04_B 273 DFLSPT-TVVCGFKNGFVAEFDLTDPEVPSF-------YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA 344 (524)
T ss_dssp EESSSS-EEEEEETTSEEEEEETTBCSSCSE-------EEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH
T ss_pred EecCCC-eEEEEeCCCEEEEEECCCCCCceE-------EeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC
Confidence 999865 78888 999999999986543321 357799999999 4677643699999999999999999876
Q ss_pred cccccccceeccCCCCccceeeccc--cceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccccccccccc
Q 010256 317 LCDTHSKLFEEQEAPGTRSFFTEII--ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 393 (514)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
.. ..+. +|. ..|.+++|+|+++.++++++ ++|++||++. +..+.++.+|...
T Consensus 345 ~~----~~~~------------~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~-------- 399 (524)
T 2j04_B 345 TT----KTTV------------SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVSRETT-------- 399 (524)
T ss_dssp HH----CEEE------------EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEECSSC--------
T ss_pred cc----cccc------------cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeecCCCc--------
Confidence 52 2222 232 24789999999999998765 8999999997 7777888888765
Q ss_pred ccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC-----CCcceeEEEECCCCCceeecCCCCeEEEe
Q 010256 394 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-----SKNPMRRQVQTPSRPSRPLGSLSGVVRRV 468 (514)
Q Consensus 394 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~s~d~~v~i~ 468 (514)
|++++|+|+|++|++|+.||.|++||+... ....+.. +...++.++|+|+++.+.. ..+..+...
T Consensus 400 -------V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~~~~~~~~ 469 (524)
T 2j04_B 400 -------ITAIGVSRLHPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DSSYEVYPL 469 (524)
T ss_dssp -------EEEEECCSSCCBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEEE-CCCCCCCC-
T ss_pred -------eEEEEeCCCCCeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEEc-cCCceeccc
Confidence 459999999999999999999999998643 2222111 1225778999999885532 111111110
Q ss_pred eCCCCCccccCCcccccccceEEEEEcCCCC---EEEEEec-CcEEEEe
Q 010256 469 KGADNSALDANGNAFDFSMKLLHLAWHPSEN---SIACAAS-NSLYMYY 513 (514)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~---~l~~~~~-~~~~i~~ 513 (514)
. .. ........+|...|.+++|+|+++ +||+|+. +.++||.
T Consensus 470 ~---~~-g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 470 T---VN-DVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp ----------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred c---cC-CcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 0 00 012223446899999999999965 8999986 6688885
No 44
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-39 Score=310.33 Aligned_cols=339 Identities=10% Similarity=0.136 Sum_probs=253.4
Q ss_pred cceeEEEEeeCCCCc-EEEEe----------eCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeecc
Q 010256 113 EKINKIRWCQSANSA-LYLLS----------TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA 181 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~-~l~s~----------~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 181 (514)
..|.+++|+ ++++ +++++ +.|+.|++||+.+++........ .....+. .++|+|
T Consensus 13 ~~v~~~~~s--p~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~------~~~~~v~-------~~~~s~ 77 (416)
T 2pm9_A 13 SRTATFAWS--HDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL------QVDSKFN-------DLDWSH 77 (416)
T ss_dssp EESCBCCBC--SSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC------CCSSCEE-------EEEECS
T ss_pred hhcceEeeC--CCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE------ecCCceE-------EEEECC
Confidence 568889994 5655 88898 88999999999877522111000 0123444 889999
Q ss_pred CCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEE
Q 010256 182 NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLW 259 (514)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iw 259 (514)
+++.+ ++++.++.|++|+ +...... ...... +.+|...|.+++|+|+ +++|+++ .|+.|++|
T Consensus 78 ~~~~l------------~~~~~dg~v~vw~-~~~~~~~--~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 78 NNKII------------AGALDNGSLELYS-TNEANNA--INSMAR-FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW 141 (416)
T ss_dssp SSSCE------------EEEESSSCEEEEC-CSSTTSC--CCEEEE-CCCSSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred CCCeE------------EEEccCCeEEEee-ccccccc--ccchhh-ccCCccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence 99998 9999999999999 3331110 112222 3789999999999998 8999999 89999999
Q ss_pred eccCCC------ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCc
Q 010256 260 NLEISN------QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (514)
Q Consensus 260 d~~~~~------~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 333 (514)
|+++.+ .... ...+..|...|.+++|+|++..+|++++.|+.|++||+++++.. ..+..+..
T Consensus 142 d~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~~--- 209 (416)
T 2pm9_A 142 DMNKCTESPSNYTPLT-----PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV----IHLSYTSP--- 209 (416)
T ss_dssp BTTTTSSCTTTCCCBC-----CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE----EEECCCCC---
T ss_pred ECCCCccccccccccc-----cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc----eEEecccc---
Confidence 998765 2211 12346788999999999995489999999999999999987653 23332210
Q ss_pred cceeeccccceeEEEEecCC-CEEEEEeC-C---eEEEEEccCCCCceeeee-eccccccccccccccCCccceeeEEEc
Q 010256 334 RSFFTEIIASISDIKFARNG-RHILSRDY-M---TLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLS 407 (514)
Q Consensus 334 ~~~~~~~~~~i~~~~~s~~g-~~l~~~~~-~---~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (514)
..+|...|.+++|+|++ .+++++++ + .|++||++....++..+. .|... |.+++|+
T Consensus 210 ---~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~---------------v~~~~~s 271 (416)
T 2pm9_A 210 ---NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG---------------ILSLDWC 271 (416)
T ss_dssp ---SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC---------------EEEEEEC
T ss_pred ---ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc---------------eeEEEeC
Confidence 12345789999999997 57887765 6 999999997446667766 66544 4499999
Q ss_pred C-CCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCC-CceeecCCCCeEEEeeCCCCCccccC------
Q 010256 408 G-DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVVRRVKGADNSALDAN------ 479 (514)
Q Consensus 408 ~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~v~i~~~~~~~~~~~~------ 479 (514)
| ++++|++++.||.|++||+.+++ ....+.+|...+.+++|+|++ ++|++++.|+.|++++-.........
T Consensus 272 ~~~~~~l~s~~~dg~v~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~ 350 (416)
T 2pm9_A 272 HQDEHLLLSSGRDNTVLLWNPESAE-QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETK 350 (416)
T ss_dssp SSCSSCEEEEESSSEEEEECSSSCC-EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC------
T ss_pred CCCCCeEEEEeCCCCEEEeeCCCCc-cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccccccc
Confidence 9 99999999999999999999874 457888999999999999999 89999999999999332211100000
Q ss_pred --------------------------CcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 480 --------------------------GNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 480 --------------------------~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
.....+...+..++|+|||++||+++ ++.+.||.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 351 QQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN 411 (416)
T ss_dssp ----------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred ccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence 00001567788999999999999998 56688885
No 45
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.1e-37 Score=317.09 Aligned_cols=307 Identities=15% Similarity=0.218 Sum_probs=235.6
Q ss_pred ccccccceEEEEEcCCC-CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 31 EVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g-~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
..+|.+.|++++|+|++ ++|+||+.||+|+||++.+.... .......+.+|.
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~------------------~~~~~~~~~~h~--------- 430 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA------------------YGVAQRRLTGHS--------- 430 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC------------------SCEEEEEEECCS---------
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc------------------cccccceecCCC---------
Confidence 45899999999999865 79999999999999998765421 112345678898
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.+++| ++++++|++++.|++|++||+.+++.......+ .+.|. +++|+|+++.+
T Consensus 431 ---~~v~~v~~--s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h--------~~~v~-------~~~~s~~~~~l--- 487 (694)
T 3dm0_A 431 ---HFVEDVVL--SSDGQFALSGSWDGELRLWDLAAGVSTRRFVGH--------TKDVL-------SVAFSLDNRQI--- 487 (694)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECC--------SSCEE-------EEEECTTSSCE---
T ss_pred ---CcEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCcceeEEeCC--------CCCEE-------EEEEeCCCCEE---
Confidence 88999999 567889999999999999999999876665544 34455 88999999998
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC--CEEEEe-cCCeEEEEeccCCCc
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQ 266 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~~ 266 (514)
++++.|++|++|| ...... .. ......+|...|.+++|+|++ ..|+++ .|++|++||+++.+.
T Consensus 488 ---------~s~s~D~~i~iwd-~~~~~~---~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~ 553 (694)
T 3dm0_A 488 ---------VSASRDRTIKLWN-TLGECK---YT-ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL 553 (694)
T ss_dssp ---------EEEETTSCEEEEC-TTSCEE---EE-ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred ---------EEEeCCCEEEEEE-CCCCcc---ee-eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE
Confidence 9999999999999 322111 11 111125789999999999986 578888 999999999986543
Q ss_pred eeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
.. .+.+|...|++++|+|++ ++|++|+.||.|++||+++++.. ..+.. ...|.+
T Consensus 554 ~~--------~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~----~~~~~-------------~~~v~~ 607 (694)
T 3dm0_A 554 RS--------TLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKL----YSLEA-------------NSVIHA 607 (694)
T ss_dssp EE--------EECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEEE----ECCBC-------------SSCEEE
T ss_pred EE--------EEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceE----EEecC-------------CCcEEE
Confidence 32 467899999999999999 89999999999999999988753 22221 257999
Q ss_pred EEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccc----cccccCCccceeeEEEcCCCCEEEEEeCCCcE
Q 010256 347 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLC----DLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (514)
Q Consensus 347 ~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (514)
++|+|++.+++++.++.|+|||+.+ +..+..+..+........ ..........+.+++|+|||++|++|+.||.|
T Consensus 608 ~~~sp~~~~l~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i 686 (694)
T 3dm0_A 608 LCFSPNRYWLCAATEHGIKIWDLES-KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVI 686 (694)
T ss_dssp EEECSSSSEEEEEETTEEEEEETTT-TEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEcCCCcEEEEEcCCCEEEEECCC-CCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeE
Confidence 9999999999999888899999997 666666654322110000 00001111225689999999999999999999
Q ss_pred EEEecC
Q 010256 423 RVFGCS 428 (514)
Q Consensus 423 ~iwd~~ 428 (514)
+||++.
T Consensus 687 ~iW~i~ 692 (694)
T 3dm0_A 687 RVWGIG 692 (694)
T ss_dssp EEEEC-
T ss_pred EEEecc
Confidence 999985
No 46
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-37 Score=285.51 Aligned_cols=300 Identities=15% Similarity=0.159 Sum_probs=215.9
Q ss_pred eeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecc
Q 010256 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (514)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (514)
+....+.+|. +.|.+++|+ ++ +|++++.|++|++||+..+.......+
T Consensus 5 ~~~~~~~~h~------------~~v~~~~~s--~~--~las~~~D~~i~lw~~~~~~~~~~~~~---------------- 52 (330)
T 2hes_X 5 NLIKSLKLYK------------EKIWSFDFS--QG--ILATGSTDRKIKLVSVKYDDFTLIDVL---------------- 52 (330)
T ss_dssp EEEEEEECCS------------SCEEEEEEE--TT--EEEEEESSSCEEEEECSSSCCEEEEEE----------------
T ss_pred ccceeeccCC------------CceeeeccC--CC--EEEEEcCCCEEEEEEecCCCeEEEEEE----------------
Confidence 3567788998 889999995 44 899999999999999976421110000
Q ss_pred cccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEE
Q 010256 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 250 (514)
...+|...|.+++|+|++++|++
T Consensus 53 ---------------------------------------------------------~~~~h~~~v~~v~~sp~~~~las 75 (330)
T 2hes_X 53 ---------------------------------------------------------DETAHKKAIRSVAWRPHTSLLAA 75 (330)
T ss_dssp ---------------------------------------------------------CTTCCCSCEEEEEECTTSSEEEE
T ss_pred ---------------------------------------------------------ecCCccCCEEEEEECCCCCEEEE
Confidence 01348899999999999999999
Q ss_pred e-cCCeEEEEeccCCCc---eeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccccee
Q 010256 251 A-DDLRINLWNLEISNQ---SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 251 ~-~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
| .|++|++||++.... .... ...+.+|...|.+++|+|++ ++|++|+.|+.|++||++........
T Consensus 76 ~s~D~~v~iw~~~~~~~~~~~~~~----~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~----- 145 (330)
T 2hes_X 76 GSFDSTVSIWAKEESADRTFEMDL----LAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYEC----- 145 (330)
T ss_dssp EETTSCEEEEEC-------CCCEE----EEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEE-----
T ss_pred EeCCCcEEEEEcccCcCcccccee----EEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEE-----
Confidence 9 999999999863221 0000 02467899999999999998 89999999999999999543211000
Q ss_pred ccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCC--CceeeeeeccccccccccccccCCccceee
Q 010256 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
...+.+|...|.+++|+|++.+|++++. ++|++||... + +++..+.+|... |.+
T Consensus 146 -------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~-~~~~~~~~~~~h~~~---------------v~~ 202 (330)
T 2hes_X 146 -------ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD-DDWECVAVLNGHEGT---------------VWS 202 (330)
T ss_dssp -------EEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEET-TEEEEEEEECCCSSC---------------EEE
T ss_pred -------EEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC-CCeeEEEEccCCCCc---------------EEE
Confidence 1235567789999999999999999864 9999999875 3 466777777654 448
Q ss_pred EEEcCC--CCEEEEEeCCCcEEEEecCCCc-------eeeeeecC-CCcceeEEEECCCCCceeecCCCCeEEEeeCCCC
Q 010256 404 CCLSGD--GGRVATGSYSNLFRVFGCSEGS-------AESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADN 473 (514)
Q Consensus 404 ~~~s~~--~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~ 473 (514)
++|+|+ +.+|++|+.|+.|++||+..+. .....+.. |...|.+++|++++ +|++++.|+.|++.+....
T Consensus 203 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 203 SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred EEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 999998 7799999999999999987531 12234444 89999999999664 8999999999999332110
Q ss_pred CccccCCccccccc-ceEEEEEcC--CCCEEEEEe-cCcEEEEe
Q 010256 474 SALDANGNAFDFSM-KLLHLAWHP--SENSIACAA-SNSLYMYY 513 (514)
Q Consensus 474 ~~~~~~~~~~~~~~-~v~~~~~sp--d~~~l~~~~-~~~~~i~~ 513 (514)
...........|.. .|.+++|+| ++++||+++ ++.++||.
T Consensus 282 ~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~ 325 (330)
T 2hes_X 282 EWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWS 325 (330)
T ss_dssp EEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred ceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence 00001111124666 899999999 789999887 55688886
No 47
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-36 Score=283.80 Aligned_cols=288 Identities=14% Similarity=0.191 Sum_probs=236.1
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|+|++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----------------------~~~~~~~h~---------- 74 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-----------------------RLGTLDGHT---------- 74 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-----------------------EEEEECCCS----------
T ss_pred EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-----------------------hhhhhhhcC----------
Confidence 45899999999999999999999999999999987765 446678888
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++| ++++.+|++++.|+.|++||+.+++.....
T Consensus 75 --~~v~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------------------------------------- 112 (369)
T 3zwl_B 75 --GTIWSIDV--DCFTKYCVTGSADYSIKLWDVSNGQCVATW-------------------------------------- 112 (369)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEE--------------------------------------
T ss_pred --CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------------------------------------
Confidence 88999999 557789999999999999999877543321
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cC-----CeEEEEeccCC
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-----LRINLWNLEIS 264 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d-----~~i~iwd~~~~ 264 (514)
.+...|.+++|+|++++|+++ .+ +.|++||++..
T Consensus 113 ----------------------------------------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~ 152 (369)
T 3zwl_B 113 ----------------------------------------KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD 152 (369)
T ss_dssp ----------------------------------------ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred ----------------------------------------ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence 144678999999999999998 77 99999999866
Q ss_pred CceeeeeccC---CCcccccCC--ceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeec
Q 010256 265 NQSFNIVDVK---PANMEDLTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (514)
Q Consensus 265 ~~~~~~~~~~---~~~~~~~~~--~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (514)
.....+.... ...+..+.. .+.+++|+|++ ++|++++.||.|++||+++.... ... +..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~---~~~------------~~~ 216 (369)
T 3zwl_B 153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEY---VDS------------IDL 216 (369)
T ss_dssp TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEE---EEE------------EEC
T ss_pred ccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEe---EEE------------Eec
Confidence 5432221111 112334444 89999999998 89999999999999999873221 222 444
Q ss_pred cccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC
Q 010256 340 IIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (514)
Q Consensus 340 ~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (514)
|...|.+++|+|++++|++++. +.|++||+++ ++.+..+..... +..++|+|+++++++++.
T Consensus 217 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~ 279 (369)
T 3zwl_B 217 HEKSISDMQFSPDLTYFITSSRDTNSFLVDVST-LQVLKKYETDCP----------------LNTAVITPLKEFIILGGG 279 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECSSC----------------EEEEEECSSSSEEEEEEC
T ss_pred CCCceeEEEECCCCCEEEEecCCceEEEEECCC-CceeeeecCCCC----------------ceeEEecCCCceEEEeec
Confidence 6678999999999999999864 9999999997 777777663221 348999999999999998
Q ss_pred CC--------------cEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 419 SN--------------LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 419 dg--------------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
++ .+++||+.+++ ....+.+|...|.+++|+|++++|++++.||.|++
T Consensus 280 ~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 341 (369)
T 3zwl_B 280 QEAKDVTTTSANEGKFEARFYHKIFEE-EIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341 (369)
T ss_dssp CC-------------CEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCceEEEEecCCCcceeEEEecCCCc-chhheecccCcEEEEEECCCCCEEEEEcCCCeEEE
Confidence 88 89999999874 44788999999999999999999999999999999
No 48
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.6e-37 Score=309.98 Aligned_cols=345 Identities=15% Similarity=0.161 Sum_probs=266.6
Q ss_pred cccccccc-eEEEEEcC--CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccc
Q 010256 30 EEVQEVDI-ISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (514)
Q Consensus 30 ~~~~h~~~-V~~~~~s~--~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (514)
...+|.+. |++++|+| ++++||+|+.||.|+||++.+++... .+.......+..|.
T Consensus 58 ~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~---------------~~~~~~~~~~~~~~------ 116 (615)
T 1pgu_A 58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN---------------SVEVNVKSEFQVLA------ 116 (615)
T ss_dssp EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT---------------EEEEEEEEEEECCS------
T ss_pred EEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccc---------------cccccccchhhccc------
Confidence 34579999 99999999 99999999999999999997552100 00122455677777
Q ss_pred cccccccceeEEEEeeCCCCcEEEEeeCC----CeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccC
Q 010256 107 KSLEIEEKINKIRWCQSANSALYLLSTND----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN 182 (514)
Q Consensus 107 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 182 (514)
..|.+++| ++++++|++++.+ +.|++|| .++.......+ ...+. .+.|+|+
T Consensus 117 ------~~v~~~~~--s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~--------~~~v~-------~~~~~~~ 171 (615)
T 1pgu_A 117 ------GPISDISW--DFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGH--------SQRIN-------ACHLKQS 171 (615)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSC--------SSCEE-------EEEECSS
T ss_pred ------ccEEEEEE--eCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecC--------CccEE-------EEEECCC
Confidence 88999999 5678899999887 7899998 33333333322 23444 8899999
Q ss_pred CC-ccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCcc---CeEEEEECCC-CCEEEEe-cCCeE
Q 010256 183 GG-CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY---HINSISNNSD-GETFISA-DDLRI 256 (514)
Q Consensus 183 ~~-~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~-~~~l~s~-~d~~i 256 (514)
++ .+ ++++.++.|++|| ... .+.... +.+|.. .|.+++|+|+ +++|+++ .|+.|
T Consensus 172 ~~~~l------------~~~~~d~~v~vwd-~~~------~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 231 (615)
T 1pgu_A 172 RPMRS------------MTVGDDGSVVFYQ-GPP------FKFSAS-DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKI 231 (615)
T ss_dssp SSCEE------------EEEETTTEEEEEE-TTT------BEEEEE-ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCE
T ss_pred CCcEE------------EEEeCCCcEEEEe-CCC------cceeee-ecccCCCCceEEEEEECCCCCCEEEEEeCCCeE
Confidence 98 56 8999999999999 322 222233 367888 9999999999 9999999 89999
Q ss_pred EEEeccCCCceeeeeccCCCcc-c---ccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccc-----------
Q 010256 257 NLWNLEISNQSFNIVDVKPANM-E---DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH----------- 321 (514)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~~~-~---~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~----------- 321 (514)
++||+++++... .+ . .|...|.+++|+ ++ .+|++++.|+.|++||+++++.....
T Consensus 232 ~vwd~~~~~~~~--------~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 301 (615)
T 1pgu_A 232 SCFDGKSGEFLK--------YIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 301 (615)
T ss_dssp EEEETTTCCEEE--------ECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCE
T ss_pred EEEECCCCCEeE--------EecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCce
Confidence 999998665443 23 3 688999999999 87 89999999999999999865422100
Q ss_pred ------------------------------ccceeccCC-----------------------------------------
Q 010256 322 ------------------------------SKLFEEQEA----------------------------------------- 330 (514)
Q Consensus 322 ------------------------------~~~~~~~~~----------------------------------------- 330 (514)
...+..+..
T Consensus 302 ~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~ 381 (615)
T 1pgu_A 302 VGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS 381 (615)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECC
T ss_pred eEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEEC
Confidence 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 010256 331 -------------------------------------------------------------------------------- 330 (514)
Q Consensus 331 -------------------------------------------------------------------------------- 330 (514)
T Consensus 382 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 461 (615)
T 1pgu_A 382 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV 461 (615)
T ss_dssp STTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE
T ss_pred CCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEE
Confidence
Q ss_pred ----CCc----------c--ceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeee-ccccccccccc
Q 010256 331 ----PGT----------R--SFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDL 392 (514)
Q Consensus 331 ----~~~----------~--~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~ 392 (514)
... . ..+.+|...|.+++|+|++++|++++. +.|++||+.+ ++.+..+.. |...
T Consensus 462 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~------- 533 (615)
T 1pgu_A 462 GLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSK------- 533 (615)
T ss_dssp EETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSC-------
T ss_pred eecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCc-------
Confidence 000 0 234557789999999999999999865 9999999997 777777665 5543
Q ss_pred cccCCccceeeEEEcC----------CCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCC
Q 010256 393 YENDSIFDKFECCLSG----------DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 393 ~~~~~~~~v~~~~~s~----------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d 462 (514)
|.+++|+| ++++|++++.||.|++||+.++......+.+|...|.+++|+|+++ |++++.|
T Consensus 534 --------v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d 604 (615)
T 1pgu_A 534 --------INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGAD 604 (615)
T ss_dssp --------EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETT
T ss_pred --------eeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCC
Confidence 45999999 9999999999999999999987556678999999999999999999 9999999
Q ss_pred CeEEE
Q 010256 463 GVVRR 467 (514)
Q Consensus 463 ~~v~i 467 (514)
+.|++
T Consensus 605 ~~v~i 609 (615)
T 1pgu_A 605 ACIKR 609 (615)
T ss_dssp SCEEE
T ss_pred ceEEE
Confidence 99999
No 49
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.5e-37 Score=318.29 Aligned_cols=382 Identities=14% Similarity=0.157 Sum_probs=283.1
Q ss_pred cccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceee
Q 010256 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (514)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (514)
-..|+.... . .......|...|++++|+|++++|++|+.||.|++||+.+++ ..
T Consensus 37 v~iwd~~~~--~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-----------------------~~ 90 (814)
T 3mkq_A 37 VEIWNYETQ--V-EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-----------------------KV 90 (814)
T ss_dssp EEEEETTTT--E-EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-----------------------EE
T ss_pred EEEEECCCC--c-eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----------------------EE
Confidence 346776542 1 111234689999999999999999999999999999998766 34
Q ss_pred eeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCcc-EEEEEeeccCCCccccCCcceecccc
Q 010256 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHV 172 (514)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (514)
..+.+|. ..|.+++| ++++.+|++++.||.|++||+.++ ........+ .+.+.
T Consensus 91 ~~~~~~~------------~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--------~~~v~---- 144 (814)
T 3mkq_A 91 VDFEAHP------------DYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH--------EHFVM---- 144 (814)
T ss_dssp EEEECCS------------SCEEEEEE--CSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECC--------SSCEE----
T ss_pred EEEecCC------------CCEEEEEE--eCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCC--------CCcEE----
Confidence 5677887 88999999 567779999999999999999887 444444433 23344
Q ss_pred cCCceeecc-CCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC--CCCEEE
Q 010256 173 SAIPKSYMA-NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFI 249 (514)
Q Consensus 173 ~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~ 249 (514)
.++|+| +++.+ ++++.++.|++|| +... .....+...+...+.+++|+| ++.+|+
T Consensus 145 ---~~~~~p~~~~~l------------~~~~~dg~v~vwd-~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 145 ---CVAFNPKDPSTF------------ASGCLDRTVKVWS-LGQS------TPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp ---EEEEETTEEEEE------------EEEETTSEEEEEE-TTCS------SCSEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred ---EEEEEcCCCCEE------------EEEeCCCeEEEEE-CCCC------cceeEEecCCCCCEEEEEEEECCCCCEEE
Confidence 789999 78888 9999999999999 3222 122233245558899999999 999999
Q ss_pred Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceecc
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 328 (514)
++ .|+.|++||++++.... .+.+|...|.+++|+|++ .+|++++.||.|++||+.+++.. ..
T Consensus 203 ~~~~dg~i~~~d~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~----~~---- 265 (814)
T 3mkq_A 203 TASDDLTIKIWDYQTKSCVA--------TLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVE----KT---- 265 (814)
T ss_dssp EECTTSEEEEEETTTTEEEE--------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCSEE----EE----
T ss_pred EEeCCCEEEEEECCCCcEEE--------EEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE----EE----
Confidence 99 99999999998655432 456788999999999999 89999999999999999887652 22
Q ss_pred CCCCccceeeccccceeEEEEecCCC--EEEEEeCCeEEEEEccCCCCceeeeeeccccc------cc-----------c
Q 010256 329 EAPGTRSFFTEIIASISDIKFARNGR--HILSRDYMTLKLWDINMDSGPVATFQVHEHLR------PK-----------L 389 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~------~~-----------~ 389 (514)
+..|...+.+++|+|++. +++++.++.+.+|++.. ..+...+....... .. .
T Consensus 266 --------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 336 (814)
T 3mkq_A 266 --------LNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN-DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGN 336 (814)
T ss_dssp --------ECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC-CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSC
T ss_pred --------eecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC-CCceeEECCCCCEEEECcccccceeeeeeecccc
Confidence 333457899999999987 57778888899999875 33322221110000 00 0
Q ss_pred ccccc-----------cCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceee
Q 010256 390 CDLYE-----------NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 458 (514)
Q Consensus 390 ~~~~~-----------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 458 (514)
..+.. ...-..+.+++|+|+|++|++++ |+.+.+|++..... .+...+..++|+|+++++++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~------~~~~~i~~~~~spdg~~la~ 409 (814)
T 3mkq_A 337 EEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN------KAFGKCQDFVWGPDSNSYAL 409 (814)
T ss_dssp CCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE------EEEEECSEEEECTTSSCEEE
T ss_pred cccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc------cCCCceEEEEEeCCCCeEEE
Confidence 00000 00111345899999999999988 89999999864321 23467889999999999999
Q ss_pred cCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCC---CEEE-EEecCcEEEEe
Q 010256 459 GSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSE---NSIA-CAASNSLYMYY 513 (514)
Q Consensus 459 ~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~---~~l~-~~~~~~~~i~~ 513 (514)
++.++.+++++. ..+|...+.+++|+||+ ++|+ .+.++.+.+|.
T Consensus 410 ~~~~g~v~l~~~-----------~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d 457 (814)
T 3mkq_A 410 IDETGQIKYYKN-----------FKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFD 457 (814)
T ss_dssp ECTTCCEEEEET-----------TEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEEC
T ss_pred EeCCCcEEEEEC-----------CCCccceEEcCCcCccceecceEEEEecCCEEEEEE
Confidence 999999999421 12356788999999998 4555 55677888885
No 50
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.1e-36 Score=279.60 Aligned_cols=291 Identities=17% Similarity=0.227 Sum_probs=221.3
Q ss_pred ceeeeeeccCCCccccccccccccceeEEEEee----CCCCcEEEEeeCCCeEEEEEcCccE-------EEEEeeccCCC
Q 010256 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ----SANSALYLLSTNDKTIKLWKVQEKK-------VKKVFDWNVHP 158 (514)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~----~~~~~~l~s~~~d~~i~iw~~~~~~-------~~~~~~~~~~~ 158 (514)
......+.+|. +.|++++|.+ .+++.+|++|+.|++|++||+.+++ .......+
T Consensus 11 ~~~~~~l~gH~------------~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h--- 75 (343)
T 2xzm_R 11 VVKRGILEGHS------------DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH--- 75 (343)
T ss_dssp EEEEEEEECCS------------SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCC---
T ss_pred eeeeeeeccch------------hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccC---
Confidence 34567789998 8999999932 2367899999999999999997542 22222222
Q ss_pred ccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEE
Q 010256 159 EKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINS 238 (514)
Q Consensus 159 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (514)
...|. .++|+|++..+ ++++.|+.|++|| +... ++... +.+|...|.+
T Consensus 76 -----~~~V~-------~~~~~~~~~~l------------~s~s~D~~v~lwd-~~~~------~~~~~-~~~h~~~v~~ 123 (343)
T 2xzm_R 76 -----NHFVS-------DLALSQENCFA------------ISSSWDKTLRLWD-LRTG------TTYKR-FVGHQSEVYS 123 (343)
T ss_dssp -----SSCEE-------EEEECSSTTEE------------EEEETTSEEEEEE-TTSS------CEEEE-EECCCSCEEE
T ss_pred -----CCceE-------EEEECCCCCEE------------EEEcCCCcEEEEE-CCCC------cEEEE-EcCCCCcEEE
Confidence 23444 78999999988 9999999999999 3322 22333 3789999999
Q ss_pred EEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCC---------cEEEEEecCCeEE
Q 010256 239 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC---------NMLAYSSSKGSIR 308 (514)
Q Consensus 239 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~---------~~l~~~~~dg~i~ 308 (514)
++|+|++++|+++ .|++|++||+.. ...... .....|...|.+++|+|++. .+|++++.|+.|+
T Consensus 124 v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 197 (343)
T 2xzm_R 124 VAFSPDNRQILSAGAEREIKLWNILG-ECKFSS-----AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLK 197 (343)
T ss_dssp EEECSSTTEEEEEETTSCEEEEESSS-CEEEEC-----CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEE
T ss_pred EEECCCCCEEEEEcCCCEEEEEeccC-Cceeee-----ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEE
Confidence 9999999999999 999999999973 322211 12346888999999999862 5899999999999
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeecccccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP 387 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (514)
+||... .. . ..+.+|...|.+++|+|+|++|++|+ |+.|++||+.....+...+. +...
T Consensus 198 iwd~~~-~~----~------------~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~-- 257 (343)
T 2xzm_R 198 VWNTNF-QI----R------------YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGST-- 257 (343)
T ss_dssp EEETTT-EE----E------------EEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSC--
T ss_pred EEcCCC-ce----e------------EEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCc--
Confidence 999432 22 1 12456778999999999999999986 49999999954244444332 2111
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceee-eeec-----------CCCcceeEEEECCCCCc
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES-TTLE-----------ASKNPMRRQVQTPSRPS 455 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~-----------~~~~~v~~~~~~~~~~~ 455 (514)
|.+++|+|++++++++ .|+.|++|++.++.... ..+. +|...+.+++|+|++++
T Consensus 258 -------------v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 323 (343)
T 2xzm_R 258 -------------INQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK 323 (343)
T ss_dssp -------------EEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCC
T ss_pred -------------EEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCe
Confidence 4489999999988755 57889999998764321 1333 68888999999999999
Q ss_pred eeecCCCCeEEE
Q 010256 456 RPLGSLSGVVRR 467 (514)
Q Consensus 456 l~s~s~d~~v~i 467 (514)
|++|+.||.|++
T Consensus 324 l~sg~~Dg~v~~ 335 (343)
T 2xzm_R 324 LFAGFTDGVIRT 335 (343)
T ss_dssp EEEEETTSEEEE
T ss_pred EEEecCCceEEE
Confidence 999999999999
No 51
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.8e-37 Score=277.13 Aligned_cols=258 Identities=13% Similarity=0.224 Sum_probs=199.4
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|+|++||+|+.|++|+||++.+... +....+.+|.
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~---------------------~~~~~l~gH~---------- 53 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHE---------- 53 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB---------------------CCCEEECCCS----------
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc---------------------EEEEEEcccc----------
Confidence 347999999999999999999999999999999864321 1446788998
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|.+++|++..++.+|++++.|++|++||+.+++....
T Consensus 54 --~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~--------------------------------------- 92 (297)
T 2pm7_B 54 --GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI--------------------------------------- 92 (297)
T ss_dssp --SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC---------------------------------------
T ss_pred --CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE---------------------------------------
Confidence 889999996544578999999999999999876531000
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCCCce
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
.. +.+|...|.+++|+|+ +.+|+++ .|++|++||++.....
T Consensus 93 -----------------------------------~~-~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~ 136 (297)
T 2pm7_B 93 -----------------------------------AV-HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT 136 (297)
T ss_dssp -----------------------------------EE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB
T ss_pred -----------------------------------EE-eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce
Confidence 00 2567889999999998 8899999 9999999999865322
Q ss_pred eeeeccCCCcccccCCceEEEEEecCC------------CcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccc
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTH------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS 335 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 335 (514)
.. ..+.+|...|.+++|+|++ .++|++|+.|+.|++||++++....... .
T Consensus 137 ~~------~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~------------~ 198 (297)
T 2pm7_B 137 SP------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE------------S 198 (297)
T ss_dssp CC------EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEE------------E
T ss_pred ee------eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE------------E
Confidence 11 1456789999999999973 2689999999999999998764211101 2
Q ss_pred eeeccccceeEEEEecCC---CEEEEEe-CCeEEEEEccCCCCce--eee--eeccccccccccccccCCccceeeEEEc
Q 010256 336 FFTEIIASISDIKFARNG---RHILSRD-YMTLKLWDINMDSGPV--ATF--QVHEHLRPKLCDLYENDSIFDKFECCLS 407 (514)
Q Consensus 336 ~~~~~~~~i~~~~~s~~g---~~l~~~~-~~~i~iwd~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (514)
.+.+|...|.+++|+|++ .+|++++ |++|+|||++...... ..+ ..|.. .|++++|+
T Consensus 199 ~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~---------------~v~~~~~s 263 (297)
T 2pm7_B 199 TLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD---------------VLWRASWS 263 (297)
T ss_dssp EECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS---------------CEEEEEEC
T ss_pred EecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCC---------------cEEEEEEC
Confidence 356677899999999985 7898876 5999999998622111 111 11211 25589999
Q ss_pred CCCCEEEEEeCCCcEEEEecCC
Q 010256 408 GDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 408 ~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
|+|++|++++.||.|+||+...
T Consensus 264 ~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 264 LSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCEEEEEcCCCcEEEEEECC
Confidence 9999999999999999999863
No 52
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.4e-36 Score=284.32 Aligned_cols=303 Identities=14% Similarity=0.165 Sum_probs=234.7
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
.|.+.|++++|+|++++||+|+.||.|++|++.+++. .....+.+|.
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~---------------------~~~~~~~~h~------------ 52 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---------------------VQVHELKEHN------------ 52 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE---------------------EEEEEEECCS------------
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE---------------------EeeeeecCCC------------
Confidence 4889999999999999999999999999999976642 1445677887
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.+++|+ +++.+|++++.|+.|++||+.+++......
T Consensus 53 ~~v~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------------------------------------- 91 (372)
T 1k8k_C 53 GQVTGVDWA--PDSNRIVTCGTDRNAYVWTLKGRTWKPTLV--------------------------------------- 91 (372)
T ss_dssp SCEEEEEEE--TTTTEEEEEETTSCEEEEEEETTEEEEEEE---------------------------------------
T ss_pred CcccEEEEe--CCCCEEEEEcCCCeEEEEECCCCeeeeeEE---------------------------------------
Confidence 889999995 567899999999999999998775332211
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
...|...|.+++|+|++++|+++ .|+.|++||++.........
T Consensus 92 ------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 135 (372)
T 1k8k_C 92 ------------------------------------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 135 (372)
T ss_dssp ------------------------------------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE
T ss_pred ------------------------------------eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee
Confidence 14566789999999999999999 89999999998665321110
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccc-ceec-cCCCCccceeeccccceeEEEE
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK-LFEE-QEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.....|...|.+++|+|++ ++|++++.||.|++||++.......... .+.. .........+.+|...|.+++|
T Consensus 136 ----~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 210 (372)
T 1k8k_C 136 ----HIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF 210 (372)
T ss_dssp ----EECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE
T ss_pred ----eeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEE
Confidence 0235678899999999998 8999999999999999864322110000 0000 0001112334567789999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+|++++|++++. +.|++||+++ ++++..+..|... +.+++|+|++++|+++ .|+.|++|++.
T Consensus 211 ~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~-~d~~i~i~~~~ 273 (372)
T 1k8k_C 211 SANGSRVAWVSHDSTVCLADADK-KMAVATLASETLP---------------LLAVTFITESSLVAAG-HDCFPVLFTYD 273 (372)
T ss_dssp CSSSSEEEEEETTTEEEEEEGGG-TTEEEEEECSSCC---------------EEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred CCCCCEEEEEeCCCEEEEEECCC-CceeEEEccCCCC---------------eEEEEEecCCCEEEEE-eCCeEEEEEcc
Confidence 999999999765 9999999997 8888888877644 4489999999988887 89999999998
Q ss_pred C--Ccee-------------------------------e------eee-cCCCcceeEEEEC-CCC---CceeecCCCCe
Q 010256 429 E--GSAE-------------------------------S------TTL-EASKNPMRRQVQT-PSR---PSRPLGSLSGV 464 (514)
Q Consensus 429 ~--~~~~-------------------------------~------~~~-~~~~~~v~~~~~~-~~~---~~l~s~s~d~~ 464 (514)
. +... . ..+ .+|..+|.++++. +++ ++|++++.||.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~ 353 (372)
T 1k8k_C 274 SAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG 353 (372)
T ss_dssp TTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE
T ss_pred CcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCc
Confidence 7 3100 0 222 4899999999865 676 99999999999
Q ss_pred EEE
Q 010256 465 VRR 467 (514)
Q Consensus 465 v~i 467 (514)
|++
T Consensus 354 i~~ 356 (372)
T 1k8k_C 354 MSI 356 (372)
T ss_dssp EEE
T ss_pred eEE
Confidence 999
No 53
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=8.5e-36 Score=276.51 Aligned_cols=284 Identities=11% Similarity=0.169 Sum_probs=228.9
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|++++|++++ ||.|++|++.+++.... .......+|.
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~------------------~~~~~~~~~~---------- 97 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP------------------VSQLDCLNRD---------- 97 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC------------------SEEEECSCTT----------
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee------------------eecccccCCC----------
Confidence 457999999999999999999998 99999999987653200 0111122565
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++| +++++++++++.|+.|++||+.+++......
T Consensus 98 --~~v~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~------------------------------------- 136 (337)
T 1gxr_A 98 --NYIRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRIKAE------------------------------------- 136 (337)
T ss_dssp --SBEEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EEEEE-------------------------------------
T ss_pred --CcEEEEEE--cCCCCEEEEEcCCCcEEEEECCCCCcceeee-------------------------------------
Confidence 88999999 5677899999999999999998765211110
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
...|...|.+++|+|++++|+++ .|+.|++||+++.+...
T Consensus 137 --------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~- 177 (337)
T 1gxr_A 137 --------------------------------------LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR- 177 (337)
T ss_dssp --------------------------------------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-
T ss_pred --------------------------------------cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee-
Confidence 24567889999999999999999 99999999998654432
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+..|...+.+++|+|++ ++|++++.|+.|++||+++++.. ..+ .+...+.+++|
T Consensus 178 -------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~----~~~-------------~~~~~v~~~~~ 232 (337)
T 1gxr_A 178 -------QFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQL----QQH-------------DFTSQIFSLGY 232 (337)
T ss_dssp -------EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE----EEE-------------ECSSCEEEEEE
T ss_pred -------eeecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCceE----eee-------------cCCCceEEEEE
Confidence 356688999999999998 89999999999999999987653 222 23367999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+|+++++++++. +.|++||+.. .+ ...+..|... +.+++|+|++++|++++.||.|++||+.
T Consensus 233 s~~~~~l~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 233 CPTGEWLAVGMESSNVEVLHVNK-PD-KYQLHLHESC---------------VLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp CTTSSEEEEEETTSCEEEEETTS-SC-EEEECCCSSC---------------EEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCCCEEEEEcCCCcEEEEECCC-CC-eEEEcCCccc---------------eeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 999999999865 9999999986 43 3344444433 4489999999999999999999999999
Q ss_pred CCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 429 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+++.. ....|...+.++.|+|++++|++++.|+.|++
T Consensus 296 ~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 332 (337)
T 1gxr_A 296 YGASI--FQSKESSSVLSCDISVDDKYIVTGSGDKKATV 332 (337)
T ss_dssp TCCEE--EEEECSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CCeEE--EEecCCCcEEEEEECCCCCEEEEecCCCeEEE
Confidence 87544 34568889999999999999999999999998
No 54
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-36 Score=287.20 Aligned_cols=297 Identities=15% Similarity=0.226 Sum_probs=221.2
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccc---cCCcceecccccCCceeeccCCCccccc
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA---AGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.+++| +++|++|++++ ++.+++|++.+++.......+...... ..............+++|+|+|+.+
T Consensus 65 ~~V~~v~f--spdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l--- 138 (393)
T 1erj_A 65 SVVCCVKF--SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL--- 138 (393)
T ss_dssp SCCCEEEE--CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE---
T ss_pred CEEEEEEE--CCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE---
Confidence 88999999 56888998876 689999999998766554332111000 0000000000012278999999998
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
++++.|+.|++|| +... +.... +.+|...|.+++|+|++++|+++ .|++|++||+++++...
T Consensus 139 ---------~s~~~d~~i~iwd-~~~~------~~~~~-~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~ 201 (393)
T 1erj_A 139 ---------ATGAEDRLIRIWD-IENR------KIVMI-LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 201 (393)
T ss_dssp ---------EEEETTSCEEEEE-TTTT------EEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred ---------EEEcCCCeEEEEE-CCCC------cEEEE-EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEE
Confidence 9999999999999 3322 22223 37899999999999999999999 99999999998665433
Q ss_pred eeeccCCCcccccCCceEEEEEec-CCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
.+ .+...+.+++|+| ++ .+|++|+.|+.|++||++++... ..+... .....+|...|.++
T Consensus 202 ~~---------~~~~~v~~~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~~~----~~~~~~-----~~~~~~h~~~v~~v 262 (393)
T 1erj_A 202 TL---------SIEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGFLV----ERLDSE-----NESGTGHKDSVYSV 262 (393)
T ss_dssp EE---------ECSSCEEEEEECSTTC-CEEEEEETTSCEEEEETTTCCEE----EEEC-----------CCCSSCEEEE
T ss_pred EE---------EcCCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEE----Eeeccc-----ccCCCCCCCCEEEE
Confidence 21 2466799999999 66 89999999999999999987653 222111 11135677899999
Q ss_pred EEecCCCEEEEEe-CCeEEEEEccCCC-----------CceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEE
Q 010256 348 KFARNGRHILSRD-YMTLKLWDINMDS-----------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 415 (514)
Q Consensus 348 ~~s~~g~~l~~~~-~~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 415 (514)
+|+|+|++|++|+ |++|++||++... .+...+.+|... |.+++|+|++++|++
T Consensus 263 ~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~~~~~~~~~~l~s 327 (393)
T 1erj_A 263 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF---------------VLSVATTQNDEYILS 327 (393)
T ss_dssp EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSC---------------EEEEEECGGGCEEEE
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCc---------------EEEEEECCCCCEEEE
Confidence 9999999999986 5999999997521 123344444433 458999999999999
Q ss_pred EeCCCcEEEEecCCCceeeeeecCCCcceeEEEECC------CCCceeecCCCCeEEE
Q 010256 416 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP------SRPSRPLGSLSGVVRR 467 (514)
Q Consensus 416 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~s~s~d~~v~i 467 (514)
|+.|+.|++||+.+++. ...+.+|...|.++++++ ++++|++|+.|++|++
T Consensus 328 gs~D~~v~iwd~~~~~~-~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~i 384 (393)
T 1erj_A 328 GSKDRGVLFWDKKSGNP-LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 384 (393)
T ss_dssp EETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEE
T ss_pred EeCCCeEEEEECCCCeE-EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEE
Confidence 99999999999998754 478899999999999876 6889999999999999
No 55
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.5e-36 Score=284.25 Aligned_cols=298 Identities=13% Similarity=0.179 Sum_probs=228.2
Q ss_pred cccccceEEEEEcCCC-CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 32 VQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g-~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+++.. ......+|.
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------~~~~~~~h~---------- 118 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT---------------------SFIQGMGPG---------- 118 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE---------------------EEECCCSTT----------
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc---------------------eeeecCCcC----------
Confidence 4789999999999999 99999999999999999866532 222234677
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++|+| .++.+|++++.|+.|++||+.+........
T Consensus 119 --~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------------------------------- 158 (383)
T 3ei3_B 119 --DAITGMKFNQ-FNTNQLFVSSIRGATTLRDFSGSVIQVFAK------------------------------------- 158 (383)
T ss_dssp --CBEEEEEEET-TEEEEEEEEETTTEEEEEETTSCEEEEEEC-------------------------------------
T ss_pred --CceeEEEeCC-CCCCEEEEEeCCCEEEEEECCCCceEEEec-------------------------------------
Confidence 8899999964 156799999999999999998643221100
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
...|...|.+++|+|++++|+++ .|+.|++||++ ++...
T Consensus 159 --------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~- 198 (383)
T 3ei3_B 159 --------------------------------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIF- 198 (383)
T ss_dssp --------------------------------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEE-
T ss_pred --------------------------------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEE-
Confidence 13455789999999999999999 99999999995 33332
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+..|...|.+++|+|++..+|++++.|+.|++||+++.+........ .+|...|.+++|
T Consensus 199 -------~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------~~~~~~v~~~~~ 258 (383)
T 3ei3_B 199 -------KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE-------------MPHEKPVNAAYF 258 (383)
T ss_dssp -------EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE-------------EECSSCEEEEEE
T ss_pred -------EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE-------------ecCCCceEEEEE
Confidence 456789999999999999339999999999999999885432111111 246689999999
Q ss_pred ec-CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccc----cccccccCCccceeeEEEcCCCCEEEEEeCCCcEE
Q 010256 350 AR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPK----LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (514)
Q Consensus 350 s~-~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (514)
+| ++++|++++ |+.|++||+++ ++.+..+..|...... +...+. ....+..++|+|++++ +++.||.|+
T Consensus 259 s~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~s~dg~~--s~s~d~~i~ 333 (383)
T 3ei3_B 259 NPTDSTKLLTTDQRNEIRVYSSYD-WSKPDQIIIHPHRQFQHLTPIKATWH--PMYDLIVAGRYPDDQL--LLNDKRTID 333 (383)
T ss_dssp CTTTSCEEEEEESSSEEEEEETTB-TTSCSEEEECCBCCCTTSCCCCCEEC--SSSSEEEEECBCCTTT--CTTCCCCEE
T ss_pred cCCCCCEEEEEcCCCcEEEEECCC-CccccccccccccccccccceEEecc--CCCCceEEEecCCccc--ccCCCCeEE
Confidence 99 999999976 49999999997 7777777766532110 000000 0012335777888877 788999999
Q ss_pred EEecCCCceeeeeecC--CCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 424 VFGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 424 iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+||+.+++. ...+.+ |...+..++|+|++++|++++ |+.|++
T Consensus 334 iwd~~~~~~-~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~i 377 (383)
T 3ei3_B 334 IYDANSGGL-VHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILI 377 (383)
T ss_dssp EEETTTCCE-EEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEE
T ss_pred EEecCCCce-eeeecCCCCCceEEEEEEecCccEEEEec-CCcEEE
Confidence 999998754 466665 567788889999999999997 999999
No 56
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.3e-37 Score=287.13 Aligned_cols=305 Identities=11% Similarity=0.100 Sum_probs=214.6
Q ss_pred ccceEEEEEcCCCCeEEEecCC-------CeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRG-------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
.-+|.|++|+|||++|++|+.+ +.|++|++....... ...+ .......+.+|+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~--~~~~-----------~~~~~~~l~~~~------- 73 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTE--KEQF-----------HILSEFALEDND------- 73 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSH--HHHE-----------EEEEEEECCTTS-------
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcce--eeee-----------eeeeEEEccCCC-------
Confidence 3579999999999999998743 369999997654310 0000 000112456666
Q ss_pred ccccccceeEEEEeeCCCCcEEEEe-----------eCCCeEEEEEcCccE--EEEEeeccCCCccccCCcceecccccC
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLS-----------TNDKTIKLWKVQEKK--VKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~-----------~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (514)
..|.++++. .+ .++++ +.|+.+++|++.... ............ ......+.
T Consensus 74 -----~~v~s~~~~--~~--~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------ 137 (365)
T 4h5i_A 74 -----DSPTAIDAS--KG--IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDAS-TNADDYTK------ 137 (365)
T ss_dssp -----CCCCEEEEE--TT--EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCC-CCTTCCEE------
T ss_pred -----CceEEEEeC--CC--EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeec-CCcccCEE------
Confidence 778888773 32 45543 467889999986542 222222111110 00011122
Q ss_pred CceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCC
Q 010256 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL 254 (514)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~ 254 (514)
.++|+|||+.+.+ ++++.|++|++|| .... .+... ..|...|.+++|+|+|++|+++.++
T Consensus 138 -~v~fSpDg~~la~----------as~~~d~~i~iwd-~~~~------~~~~~--~~~~~~V~~v~fspdg~~l~s~s~~ 197 (365)
T 4h5i_A 138 -LVYISREGTVAAI----------ASSKVPAIMRIID-PSDL------TEKFE--IETRGEVKDLHFSTDGKVVAYITGS 197 (365)
T ss_dssp -EEEECTTSSCEEE----------EESCSSCEEEEEE-TTTT------EEEEE--EECSSCCCEEEECTTSSEEEEECSS
T ss_pred -EEEEcCCCCEEEE----------EECCCCCEEEEeE-CCCC------cEEEE--eCCCCceEEEEEccCCceEEeccce
Confidence 6899999998611 4677899999999 3322 22222 3577889999999999999999666
Q ss_pred eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC----eEEEEEcCCCccccccccceeccCC
Q 010256 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG----SIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg----~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
.+++|+..+++..... ....|...|.+++|+|++ .++++++.|+ .+++||+.........
T Consensus 198 ~~~~~~~~~~~~~~~~------~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~--------- 261 (365)
T 4h5i_A 198 SLEVISTVTGSCIARK------TDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLR--------- 261 (365)
T ss_dssp CEEEEETTTCCEEEEE------CCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEE---------
T ss_pred eEEEEEeccCcceeee------ecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceeccee---------
Confidence 6777777666554332 345688889999999999 8999999887 6888998765432111
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeee-eeccccccccccccccCCccceeeEEEcC
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (514)
...+.+|...|++++|+|+|++||+|+. ++|+|||+++ ++++..+ .+|... |++++|+|
T Consensus 262 ---~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~-~~~~~~~~~gH~~~---------------V~~v~fSp 322 (365)
T 4h5i_A 262 ---SKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD-LSMSKIFKQAHSFA---------------ITEVTISP 322 (365)
T ss_dssp ---EEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEETTSSSSC---------------EEEEEECT
T ss_pred ---eeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC-CcEEEEecCcccCC---------------EEEEEECC
Confidence 1124566789999999999999999865 9999999997 7887764 677765 45999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCC
Q 010256 409 DGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 409 ~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
||++||+|+.|++|+|||+...
T Consensus 323 dg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 323 DSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEEEETTSEEEEEECCTT
T ss_pred CCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999999754
No 57
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2e-35 Score=284.81 Aligned_cols=313 Identities=11% Similarity=0.204 Sum_probs=245.0
Q ss_pred ccccccce-EEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 31 EVQEVDII-SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V-~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
..+|.+.| +|++ ++|++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 114 l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~-----------------------~~~~~~~h~--------- 159 (445)
T 2ovr_B 114 LKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGK-----------------------CLRTLVGHT--------- 159 (445)
T ss_dssp EECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCC-----------------------EEEECCCCS---------
T ss_pred ecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCc-----------------------EEEEEcCCC---------
Confidence 45788765 5555 568999999999999999998766 446678888
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.++.|. +.++++++.||.|++||+.+++....
T Consensus 160 ---~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~-------------------------------------- 194 (445)
T 2ovr_B 160 ---GGVWSSQMR----DNIIISGSTDRTLKVWNAETGECIHT-------------------------------------- 194 (445)
T ss_dssp ---SCEEEEEEE----TTEEEEEETTSCEEEEETTTTEEEEE--------------------------------------
T ss_pred ---CCEEEEEec----CCEEEEEeCCCeEEEEECCcCcEEEE--------------------------------------
Confidence 889999994 34999999999999999988764321
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
+.+|...|.+++|+ ++.+++| .|++|++||+++++...
T Consensus 195 ---------------------------------------~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~ 233 (445)
T 2ovr_B 195 ---------------------------------------LYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLH 233 (445)
T ss_dssp ---------------------------------------ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEE
T ss_pred ---------------------------------------ECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEE
Confidence 14677889999985 5678888 99999999998765443
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
.+.+|...|.+++| ++ .++++|+.||.|++||+++++.. .. +.+|...|.+++
T Consensus 234 --------~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~----~~------------~~~~~~~v~~~~ 286 (445)
T 2ovr_B 234 --------VLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCL----HT------------LQGHTNRVYSLQ 286 (445)
T ss_dssp --------EEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEE----EE------------ECCCSSCEEEEE
T ss_pred --------EEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEe----EE------------ecCCCCceEEEE
Confidence 35678999999999 55 78999999999999999887652 22 345667899999
Q ss_pred EecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 349 ~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
| ++.++++++ |+.|++||+++ ++.+..+..|... ..++.+++++|++|+.||.|++||+
T Consensus 287 ~--~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~-----------------v~~~~~~~~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 287 F--DGIHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSL-----------------TSGMELKDNILVSGNADSTVKIWDI 346 (445)
T ss_dssp E--CSSEEEEEETTSCEEEEETTT-CCEEEEECCCCSC-----------------EEEEEEETTEEEEEETTSCEEEEET
T ss_pred E--CCCEEEEEeCCCeEEEEECCC-CCEEEEEcCCccc-----------------EEEEEEeCCEEEEEeCCCeEEEEEC
Confidence 9 788999876 59999999997 8888888877654 2334446789999999999999999
Q ss_pred CCCceeeeeecC---CCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCcc-cc-CCcccccccceEEEEEcCCCCEEE
Q 010256 428 SEGSAESTTLEA---SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL-DA-NGNAFDFSMKLLHLAWHPSENSIA 502 (514)
Q Consensus 428 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~-~~-~~~~~~~~~~v~~~~~spd~~~l~ 502 (514)
.+++. ...+.. |..+|.++.++ ++++++++.||.|++++-...... .+ ......+.+.|.+++|+|++.+||
T Consensus 347 ~~~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la 423 (445)
T 2ovr_B 347 KTGQC-LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCA 423 (445)
T ss_dssp TTCCE-EEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred CCCcE-EEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEE
Confidence 88754 356665 88899999995 579999999999999432211100 11 011125788999999999999999
Q ss_pred EEecCc-----EEEEe
Q 010256 503 CAASNS-----LYMYY 513 (514)
Q Consensus 503 ~~~~~~-----~~i~~ 513 (514)
+++.++ +.+|+
T Consensus 424 ~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 424 VGSRNGTEETKLLVLD 439 (445)
T ss_dssp EECSSSSSCCEEEEEE
T ss_pred EcccCCCCccEEEEEE
Confidence 999776 77774
No 58
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=7.3e-37 Score=280.16 Aligned_cols=258 Identities=15% Similarity=0.178 Sum_probs=196.1
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~---------------------~~~~l~gH~---------- 57 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI---------------------LIADLRGHE---------- 57 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE---------------------EEEEEECCS----------
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE---------------------EEEEEcCCC----------
Confidence 3489999999999999999999999999999999765421 446788998
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++|++..++.+|++++.|++|++||+++++.....
T Consensus 58 --~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~-------------------------------------- 97 (316)
T 3bg1_A 58 --GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSH-------------------------------------- 97 (316)
T ss_dssp --SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEE--------------------------------------
T ss_pred --ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEE--------------------------------------
Confidence 8899999965445779999999999999998765311100
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCCCce
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
. +.+|...|.+++|+|+ +.+|++| .|++|++||++.....
T Consensus 98 ------------------------------------~-~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~ 140 (316)
T 3bg1_A 98 ------------------------------------E-HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW 140 (316)
T ss_dssp ------------------------------------E-ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE
T ss_pred ------------------------------------E-ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc
Confidence 0 2578889999999998 7899999 9999999999854322
Q ss_pred eeeeccCCCcccccCCceEEEEEecCC----------------CcEEEEEecCCeEEEEEcCCCccccccccceeccCCC
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTH----------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~----------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 331 (514)
... ..+.+|...+.+++|+|+. ..+|++|+.|+.|++||++..... ...
T Consensus 141 ~~~-----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-~~~--------- 205 (316)
T 3bg1_A 141 EVK-----KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-KEE--------- 205 (316)
T ss_dssp EEC-----CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE-EEE---------
T ss_pred cee-----eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc-cee---------
Confidence 110 1456788899999999972 158999999999999999754210 001
Q ss_pred CccceeeccccceeEEEEecCC----CEEEEEe-CCeEEEEEccCCC---CceeeeeeccccccccccccccCCccceee
Q 010256 332 GTRSFFTEIIASISDIKFARNG----RHILSRD-YMTLKLWDINMDS---GPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 332 ~~~~~~~~~~~~i~~~~~s~~g----~~l~~~~-~~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
..+.+|...|.+++|+|++ .+|++++ |++|++||+.... .....+..|... |++
T Consensus 206 ---~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~---------------v~~ 267 (316)
T 3bg1_A 206 ---QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV---------------VWH 267 (316)
T ss_dssp ---ECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSC---------------EEE
T ss_pred ---eecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCc---------------EEE
Confidence 1255677899999999986 7899876 5999999987511 112333444332 459
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 404 CCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 404 ~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
++|+|++++|++++.|+.|++|+...
T Consensus 268 v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 268 VSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 99999999999999999999999763
No 59
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=9.7e-36 Score=288.78 Aligned_cols=321 Identities=12% Similarity=0.217 Sum_probs=245.2
Q ss_pred ccccccce-EEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 31 EVQEVDII-SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V-~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
..+|.+.| +++.+ ++++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~-----------------------~~~~~~~h~--------- 162 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-----------------------FLLQLSGHD--------- 162 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS---------
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc-----------------------EEEEEeCCC---------
Confidence 45787774 67666 46799999999999999987665 456778898
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeec--cCCCccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM--ANGGCGE 187 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~l~ 187 (514)
..|.+++|+ +++ ++++++.||+|++||+.+++.......+ .+.+. .+.++ ++++.+
T Consensus 163 ---~~V~~l~~~--~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h--------~~~v~-------~l~~~~~~~~~~l- 220 (464)
T 3v7d_B 163 ---GGVWALKYA--HGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGH--------NSTVR-------CLDIVEYKNIKYI- 220 (464)
T ss_dssp ---SCEEEEEEC--STT-EEEEEETTSCEEEEETTTTEEEEEECCC--------SSCEE-------EEEEEESSSCEEE-
T ss_pred ---cCEEEEEEc--CCC-EEEEEeCCCCEEEEECCCCcEEEEECCC--------CCccE-------EEEEecCCCCCEE-
Confidence 899999994 454 8999999999999999999876665543 23444 66676 566777
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeecccccccccc----------------ccccccccCccCeEEEEECCCCCEEEEe
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAG----------------CRRIYAHAHDYHINSISNNSDGETFISA 251 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~----------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 251 (514)
++++.|+.|++|| +.......... .......+|...|.++ ++++++++++
T Consensus 221 -----------~s~s~d~~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~ 286 (464)
T 3v7d_B 221 -----------VTGSRDNTLHVWK-LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSG 286 (464)
T ss_dssp -----------EEEETTSCEEEEE-CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEE
T ss_pred -----------EEEcCCCcEEEee-CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEE
Confidence 9999999999999 43322111000 0012236788888877 5778999999
Q ss_pred -cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
.|+.|++||+++.+... .+.+|...|.+++|+|++ +++++|+.||.|++||+++++.. ..
T Consensus 287 ~~d~~i~vwd~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~----~~------ 347 (464)
T 3v7d_B 287 SYDNTLIVWDVAQMKCLY--------ILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELM----YT------ 347 (464)
T ss_dssp ETTSCEEEEETTTTEEEE--------EECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEE----EE------
T ss_pred eCCCeEEEEECCCCcEEE--------EecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEE----EE------
Confidence 99999999998655443 456789999999999998 89999999999999999987752 22
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
+.+|...|.+++|+ +.+|++++ |+.|++||+.. ........ +... +..++|+++
T Consensus 348 ------~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~-~~~~~~~~-~~~~---------------~~~~~~~~~ 402 (464)
T 3v7d_B 348 ------LQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAND-YSRKFSYH-HTNL---------------SAITTFYVS 402 (464)
T ss_dssp ------ECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT-CCEEEEEE-CTTC---------------CCEEEEEEC
T ss_pred ------EeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC-Cceeeeec-CCCC---------------ccEEEEEeC
Confidence 44566889999998 57888875 59999999986 44443332 2221 126899999
Q ss_pred CCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 410 GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 410 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+++|++++ ||.|++||+.+++.....+..|...|.+++|+ +..++++++.|+.+.+
T Consensus 403 ~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i 458 (464)
T 3v7d_B 403 DNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFL 458 (464)
T ss_dssp SSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred CCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEE
Confidence 99999998 89999999999866544577899999999997 4456666677776665
No 60
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3e-35 Score=280.44 Aligned_cols=313 Identities=15% Similarity=0.205 Sum_probs=228.1
Q ss_pred ccccccceEEEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 31 EVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
...|.+.|++++|+| ++++||+|+.||.|++|++.+++........ .. .........+|.
T Consensus 39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~--------- 99 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK----AV------CSIGRDHPDVHR--------- 99 (408)
T ss_dssp CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC----EE------EEECTTCTTCCS---------
T ss_pred eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc----cc------ccccccccccCC---------
Confidence 446999999999999 9999999999999999999877643110000 00 000000113465
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.+++|+|. ++.+|++++.|+.|++||+.+++......
T Consensus 100 ---~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------------------------------ 139 (408)
T 4a11_B 100 ---YSVETVQWYPH-DTGMFTSSSFDKTLKVWDTNTLQTADVFN------------------------------------ 139 (408)
T ss_dssp ---SCEEEEEECTT-CTTCEEEEETTSEEEEEETTTTEEEEEEE------------------------------------
T ss_pred ---CcEEEEEEccC-CCcEEEEEeCCCeEEEeeCCCCccceecc------------------------------------
Confidence 88999999642 55689999999999999999876443322
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC---CCEEEEe-cCCeEEEEeccCCC
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---GETFISA-DDLRINLWNLEISN 265 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~-~d~~i~iwd~~~~~ 265 (514)
+...+.++.+++. +.+++++ .|+.|++||+++++
T Consensus 140 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 140 ------------------------------------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp ------------------------------------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred ------------------------------------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 2345677788774 5589998 99999999998665
Q ss_pred ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceecc---CCCCccceeecccc
Q 010256 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ---EAPGTRSFFTEIIA 342 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 342 (514)
... .+..|...|.+++|+|++..+|++++.||.|++||++++... ...+..+ ..........+|..
T Consensus 178 ~~~--------~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 246 (408)
T 4a11_B 178 CSH--------ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC---LITLDQHNGKKSQAVESANTAHNG 246 (408)
T ss_dssp CCE--------EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC---SEECCTTTTCSCCCTTTSSCSCSS
T ss_pred eee--------eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc---cccccccccccceeeccccccccC
Confidence 443 456789999999999999447999999999999999887643 2222221 11122333467889
Q ss_pred ceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCc
Q 010256 343 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 421 (514)
.|.+++|+|++++|++++ ++.|++||+.+ ++....+..+..... ...+........+..+++++.|+.
T Consensus 247 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 315 (408)
T 4a11_B 247 KVNGLCFTSDGLHLLTVGTDNRMRLWNSSN-GENTLVNYGKVCNNS----------KKGLKFTVSCGCSSEFVFVPYGST 315 (408)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTT-CCBCCCCCCCCCCCC----------SSCCCCEECCSSSSCEEEEEETTE
T ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCC-Cccceeccccccccc----------cccceeEEecCCCceEEEEecCCE
Confidence 999999999999999976 49999999997 555444433221110 000001222334556777788999
Q ss_pred EEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 422 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|++||+.++. ....+.+|...|.+++|+|++++|++++.||.|++
T Consensus 316 i~v~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 360 (408)
T 4a11_B 316 IAVYTVYSGE-QITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA 360 (408)
T ss_dssp EEEEETTTCC-EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred EEEEECcCCc-ceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEE
Confidence 9999999874 45788999999999999999999999999999999
No 61
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.2e-35 Score=277.09 Aligned_cols=304 Identities=14% Similarity=0.169 Sum_probs=227.6
Q ss_pred cccccceEEEEEcCC----CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeec--cCCCcccc
Q 010256 32 VQEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ--SHEPEFDY 105 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~----g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~~~ 105 (514)
.+|.+.|++++|+|+ ...+++++.++.|++|++.+++.. ..+..+. .|.
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------------------~~~~~~~~~~~~----- 69 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------------------RLLQSYVDADAD----- 69 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------------------EEEEEEECSCTT-----
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------------------EeeeeccccCCC-----
Confidence 379999999999984 456666677779999999866532 0111111 133
Q ss_pred ccccccccceeEEEEeeCCC--CcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCC
Q 010256 106 LKSLEIEEKINKIRWCQSAN--SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (514)
Q Consensus 106 ~~~~~~~~~v~~i~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 183 (514)
..|.+++|+|..+ +.+|++++.||.|++||+.+++....
T Consensus 70 -------~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-------------------------------- 110 (366)
T 3k26_A 70 -------ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH-------------------------------- 110 (366)
T ss_dssp -------CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE--------------------------------
T ss_pred -------CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee--------------------------------
Confidence 7799999987644 67999999999999999987653221
Q ss_pred CccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEec
Q 010256 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNL 261 (514)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~ 261 (514)
+.+|...|.+++|+| ++++|+++ .|+.|++||+
T Consensus 111 ---------------------------------------------~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 111 ---------------------------------------------YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp ---------------------------------------------EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred ---------------------------------------------ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 246778999999999 89999999 8999999999
Q ss_pred cCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccc--ceec----------cC
Q 010256 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK--LFEE----------QE 329 (514)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~----------~~ 329 (514)
++++....+ ..+..|...|.+++|+|++ .+|++++.||.|++||+++++....... .+.. ..
T Consensus 146 ~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (366)
T 3k26_A 146 QTDTLVAIF-----GGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI 219 (366)
T ss_dssp TTTEEEEEE-----CSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred ecCeEEEEe-----cccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence 866544322 1236789999999999998 8999999999999999998764311000 0000 00
Q ss_pred CCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCc-------------eeeeeecccccccccccccc
Q 010256 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGP-------------VATFQVHEHLRPKLCDLYEN 395 (514)
Q Consensus 330 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 395 (514)
.........+|...|.+++|+ ++++++++ ++.|++||+...... +..+..|...
T Consensus 220 ~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 287 (366)
T 3k26_A 220 HFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD---------- 287 (366)
T ss_dssp CCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC----------
T ss_pred ccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCc----------
Confidence 000112234488899999999 77888876 499999999873221 3333333322
Q ss_pred CCccceeeEEEcCC--CCEEEEEeCCCcEEEEecCCCcee---eeeecCC--CcceeEEEECCCCCceeecCCCCeEEE
Q 010256 396 DSIFDKFECCLSGD--GGRVATGSYSNLFRVFGCSEGSAE---STTLEAS--KNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 396 ~~~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~--~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|.+++|+|+ +++|++|+.||.|++||+.+++.. ...+.+| ..+|..++|+|++++|++++.||.|++
T Consensus 288 -----v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 361 (366)
T 3k26_A 288 -----IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWR 361 (366)
T ss_dssp -----SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred -----EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEE
Confidence 348999999 999999999999999999987432 2467777 799999999999999999999999999
No 62
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.7e-36 Score=285.69 Aligned_cols=330 Identities=10% Similarity=0.088 Sum_probs=230.5
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+| ++|++|+.||.|+||++.+++.. ........+.+|.
T Consensus 12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~-----------------~~~~~~~~~~~h~---------- 62 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE-----------------NPKDKSYSHFVHK---------- 62 (397)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC-----------------CGGGGEEEEECCT----------
T ss_pred hhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc-----------------cCCCcceEEecCC----------
Confidence 348999999999998 79999999999999999876521 1122345667887
Q ss_pred cccceeEEEEeeC--CCC---cEEEEeeCCCeEEEEEcCccEE-----EEEeeccCCCccccCCcceecccccCCceeec
Q 010256 111 IEEKINKIRWCQS--ANS---ALYLLSTNDKTIKLWKVQEKKV-----KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180 (514)
Q Consensus 111 ~~~~v~~i~~~~~--~~~---~~l~s~~~d~~i~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 180 (514)
..|.+++|+|. .++ .+|++++.|+.|++|++.+++. ......+... ...+.+. .++|+
T Consensus 63 --~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~-------~~~~~ 130 (397)
T 1sq9_A 63 --SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD---MKKHSFW-------ALKWG 130 (397)
T ss_dssp --TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT---GGGSCEE-------EEEEE
T ss_pred --CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccc---cCCCcEE-------EEEEe
Confidence 88999999754 126 7999999999999999987763 2222222000 0013344 88999
Q ss_pred ----cCCCc-cccccCCCCCCcccCCCCCCcEEeceeecc------cccccccccccccc------ccCccCeEEEEECC
Q 010256 181 ----ANGGC-GERNFGCASNDSSFPPGGVSSLRLPVVVTS------QETNLVAGCRRIYA------HAHDYHINSISNNS 243 (514)
Q Consensus 181 ----~~~~~-l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~------~~~~~~~~~~~~~~------~~h~~~v~~~~~~~ 243 (514)
|+++. + ++++.++.|++|| +.. ..... ..+...+. ..|...|.+++|+|
T Consensus 131 ~~~~~~~~~~l------------~~~~~dg~i~iwd-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 196 (397)
T 1sq9_A 131 ASNDRLLSHRL------------VATDVKGTTYIWK-FHPFADESNSLTLN-WSPTLELQGTVESPMTPSQFATSVDISE 196 (397)
T ss_dssp CCC----CEEE------------EEEETTSCEEEEE-EESSSSHHHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECT
T ss_pred eccCCCCceEE------------EEEeCCCcEEEEe-CCccccccccceee-ccCcceeeeeeccccCCCCCceEEEECC
Confidence 99998 8 9999999999999 443 11111 00000211 45888999999999
Q ss_pred CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccc---c---CCceEEEEEecCCCcEEEEEecC---CeEEEEEcC
Q 010256 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED---L---TEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMR 313 (514)
Q Consensus 244 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~---~~~i~~v~~~p~~~~~l~~~~~d---g~i~~wd~~ 313 (514)
++ +|+++ .|+.|++||+++.+... .+.. | ...|.+++|+|++ .+|++++.| +.|++||++
T Consensus 197 ~~-~l~~~~~dg~i~i~d~~~~~~~~--------~~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~ 266 (397)
T 1sq9_A 197 RG-LIATGFNNGTVQISELSTLRPLY--------NFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETE 266 (397)
T ss_dssp TS-EEEEECTTSEEEEEETTTTEEEE--------EEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETT
T ss_pred Cc-eEEEEeCCCcEEEEECCCCceeE--------EEeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECC
Confidence 99 99999 89999999998655443 2344 7 8899999999998 899999999 999999999
Q ss_pred CCccccccccceeccCCCCc-cceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeee------ecccc
Q 010256 314 QSALCDTHSKLFEEQEAPGT-RSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQ------VHEHL 385 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~------~~~~~ 385 (514)
+++.. ..+.....+.. ......|...|.+++|+|++++|++++. +.|++||+.. ++.+..+. .|...
T Consensus 267 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~ 341 (397)
T 1sq9_A 267 FGERI----GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEED 341 (397)
T ss_dssp TCCEE----EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCGGGCSSGGG
T ss_pred CCccc----ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecccCcccchhh
Confidence 87652 23322100000 0000116789999999999999999864 9999999997 78888887 44100
Q ss_pred ccccccccccCCccceeeEEEcCCC----------CEEEEEeCCCcEEEEecCCC
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGDG----------GRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~----------~~l~s~~~dg~i~iwd~~~~ 430 (514)
...-........-..|.+++|+|++ ++|++++.||.|++|++.++
T Consensus 342 ~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 342 ILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred hhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 0000000000001235599999998 79999999999999999875
No 63
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=9.9e-36 Score=278.43 Aligned_cols=288 Identities=12% Similarity=0.179 Sum_probs=221.0
Q ss_pred cccccceEEEEEcCCCCe-EEEecC---CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 32 VQEVDIISAIEFDKSGDH-LATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~-l~tg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
.+|.+.|++++|+|++.. +++|+. ||.|+||++.+++.. .....+|.
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~----------------------~~~~~~~~------- 65 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK----------------------LLREIEKA------- 65 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE----------------------EEEEEEES-------
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc----------------------ceeeeccc-------
Confidence 469999999999999965 556665 999999999876531 11122555
Q ss_pred ccccccceeEEEEeeCC-CCcEEEEeeCCCeEEEEEcCccE-EEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 108 SLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
..|.+++|+|.. ++.+|++++.||.|++||+.+++ ...
T Consensus 66 -----~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------------------------------- 105 (357)
T 3i2n_A 66 -----KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY----------------------------------- 105 (357)
T ss_dssp -----SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE-----------------------------------
T ss_pred -----CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE-----------------------------------
Confidence 789999996532 26799999999999999998653 100
Q ss_pred cccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEE------ECCCCCEEEEe-cCCeEEE
Q 010256 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS------NNSDGETFISA-DDLRINL 258 (514)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~------~~~~~~~l~s~-~d~~i~i 258 (514)
. +.+|...|.+++ |+|++++|+++ .|+.|++
T Consensus 106 -----------------------------------------~-~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~v 143 (357)
T 3i2n_A 106 -----------------------------------------S-VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKV 143 (357)
T ss_dssp -----------------------------------------E-ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEE
T ss_pred -----------------------------------------E-EEecccceEEEeeccccccCCCccEEEEEeCCCeEEE
Confidence 0 256778888884 57899999999 9999999
Q ss_pred EeccCCCceeeeeccCCCcccccCCceEEEE----EecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCcc
Q 010256 259 WNLEISNQSFNIVDVKPANMEDLTEVITSAE----FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (514)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~----~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 334 (514)
||+++.+.....+.. ....+...+.+++ |+|++ ++|++++.||.|++||+++++..
T Consensus 144 wd~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~---------------- 203 (357)
T 3i2n_A 144 WDPRQKDDPVANMEP---VQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALR---------------- 203 (357)
T ss_dssp ECTTSCSSCSEEECC---CTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEE----------------
T ss_pred EeCCCCCCcceeccc---cCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCcee----------------
Confidence 999976633332110 0111244788888 67888 89999999999999999987642
Q ss_pred ceeeccccceeEEEEec---CCCEEEEEeC-CeEEEEEccCCCCceeeee-----eccccccccccccccCCccceeeEE
Q 010256 335 SFFTEIIASISDIKFAR---NGRHILSRDY-MTLKLWDINMDSGPVATFQ-----VHEHLRPKLCDLYENDSIFDKFECC 405 (514)
Q Consensus 335 ~~~~~~~~~i~~~~~s~---~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (514)
....|...|.+++|+| ++.++++++. +.|++||++. ++++..+. .|... |.+++
T Consensus 204 -~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~---------------v~~~~ 266 (357)
T 3i2n_A 204 -WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKST---------------VWQVR 266 (357)
T ss_dssp -EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSC---------------EEEEE
T ss_pred -eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCC---------------EEEEE
Confidence 1233557899999999 8999999864 9999999986 55555444 44433 45999
Q ss_pred EcCCCC-EEEEEeCCCcEEEEecCCCc------------------eeeeeecCCCcceeEEEECCCCCcee-ecCCCCeE
Q 010256 406 LSGDGG-RVATGSYSNLFRVFGCSEGS------------------AESTTLEASKNPMRRQVQTPSRPSRP-LGSLSGVV 465 (514)
Q Consensus 406 ~s~~~~-~l~s~~~dg~i~iwd~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~l~-s~s~d~~v 465 (514)
|+|+++ +|++++.||.|++||+..+. .....+.+|..+|.+++|+|++++|+ +++.|+.|
T Consensus 267 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i 346 (357)
T 3i2n_A 267 HLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTV 346 (357)
T ss_dssp EETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred ECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcE
Confidence 999999 89999999999999998643 23467889999999999999999998 89999999
Q ss_pred EE
Q 010256 466 RR 467 (514)
Q Consensus 466 ~i 467 (514)
++
T Consensus 347 ~i 348 (357)
T 3i2n_A 347 RV 348 (357)
T ss_dssp EE
T ss_pred EE
Confidence 99
No 64
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-37 Score=291.15 Aligned_cols=323 Identities=8% Similarity=-0.005 Sum_probs=235.7
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
.-.+.|.+++|||||+++|+++.|++|+ |....+ .+.+|.
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~--------------------------~l~gh~------------ 52 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK--------------------------DINCNS------------ 52 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS--------------------------CCSSBG------------
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc--------------------------eecCCC------------
Confidence 4468999999999999999999999999 643332 346777
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.+++|+| +| .++.+.+|+.+... ...... ...|. .++|+|+|+.+
T Consensus 53 ~~v~~V~FsP--dg-------~~~~~~~~~~~~~~---~~~~~~-------~~~V~-------~vawSPdG~~L------ 100 (588)
T 2j04_A 53 KNLFHVKEFP--LE-------FENKLDFELAQQNG---LLNSQP-------VCYPR-------VCKPSPIDDWM------ 100 (588)
T ss_dssp GGTEEEEEEC--CC-------CCCTTTTSCCCSSC---SSTTSC-------SCCEE-------EEEECSSSSCE------
T ss_pred ccEEEEEECC--CC-------CcceEEEEeCCCce---EeecCC-------CCcEE-------EEEECCCCCEE------
Confidence 8899999954 54 45555555543222 111110 23444 88999999999
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCcc-----CeEEEEECCCCCEEEEe-cCCeEEEEeccCCCc
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY-----HINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 266 (514)
++++.+|.+++|+ . +. +...+ . |.. .|.+++|+|||++|++| .||+|++||+.++..
T Consensus 101 ------As~s~dg~V~iwd-~---~~-----~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l 163 (588)
T 2j04_A 101 ------AVLSNNGNVSVFK-D---NK-----MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSE 163 (588)
T ss_dssp ------EEEETTSCEEEEE-T---TE-----EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTT
T ss_pred ------EEEeCCCcEEEEe-C---Cc-----eeeec-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcc
Confidence 9999999999998 2 11 22222 3 444 59999999999999999 999999999986542
Q ss_pred ------eeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecc
Q 010256 267 ------SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (514)
Q Consensus 267 ------~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (514)
....+. ....+|...|.+++|+|+| +++++.|+.|++||+..+... ...+.+. .+|
T Consensus 164 ~~~~~i~l~ti~---~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~-~~~~tL~-----------~~h 225 (588)
T 2j04_A 164 NTPEFYFESSIR---LSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQ-PVSRMIQ-----------NAS 225 (588)
T ss_dssp TCCCCEEEEEEE---CSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSC-CCEEEEE-----------CCC
T ss_pred ccccceeeeeee---cccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccc-cceeeec-----------ccc
Confidence 111110 1236688999999999986 788999999999999876531 0011121 245
Q ss_pred ccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE--cCCCCEEEEEeC
Q 010256 341 IASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL--SGDGGRVATGSY 418 (514)
Q Consensus 341 ~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~ 418 (514)
...|.+++|+ |+.|+++++++|++||+.. ++......+|... +.+++| +||+..|++++.
T Consensus 226 ~~~V~svaFs--g~~LASa~~~tIkLWd~~~-~~~~~~~~gh~~~---------------V~~va~~~s~d~~~La~a~e 287 (588)
T 2j04_A 226 RRKITDLKIV--DYKVVLTCPGYVHKIDLKN-YSISSLKTGSLEN---------------FHIIPLNHEKESTILLMSNK 287 (588)
T ss_dssp SSCCCCEEEE--TTEEEEECSSEEEEEETTT-TEEEEEECSCCSC---------------CCEEEETTCSSCEEEEECSS
T ss_pred cCcEEEEEEE--CCEEEEEeCCeEEEEECCC-CeEEEEEcCCCce---------------EEEEEeeeCCCCCEEEEEcC
Confidence 5789999999 6899998889999999985 4432333266654 338999 999999999999
Q ss_pred CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCC
Q 010256 419 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSE 498 (514)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~ 498 (514)
||. ++|... .+.++|++..+++. |+++++ |+.....+. .++....|.+++|||||
T Consensus 288 dG~-klw~~d-----------------~~~~spd~~l~a~~--d~~v~l---W~~~g~~l~--~~~~~~~I~~va~SPdG 342 (588)
T 2j04_A 288 TSY-KVLLED-----------------ELHVTADNIIAPYL--EKKFKK---WSTIWNEFN--NYETTLVIHGISLSPDG 342 (588)
T ss_dssp CEE-EEEESS-----------------SEEEECCCSSHHHH--HHHHHH---TTTTTTSSS--SSCCEEEEEEEEECTTS
T ss_pred CCC-EEEeec-----------------cEEECCCceEEEEc--CCEEEE---EECCCCcee--eeccceEEEEEEECCCC
Confidence 999 999977 15599999998886 888888 333211111 23346679999999999
Q ss_pred CEEEEEe
Q 010256 499 NSIACAA 505 (514)
Q Consensus 499 ~~l~~~~ 505 (514)
+.+|+++
T Consensus 343 ~~lA~~~ 349 (588)
T 2j04_A 343 YSIAIVY 349 (588)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999886
No 65
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.1e-37 Score=288.05 Aligned_cols=301 Identities=11% Similarity=0.129 Sum_probs=215.7
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
.|.+.|++++|+|+|++||+|+.||.|+||++.++.. .....+.+|.
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~---------------------~~~~~~~~h~------------ 55 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW---------------------KHARTFSDHD------------ 55 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE---------------------EECCCBCCCS------------
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce---------------------EEEEEEecCC------------
Confidence 3567899999999999999999999999999986621 1345677887
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccE-EEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..|.+++| ++++++|++++.|+.|++||+.+++ ....
T Consensus 56 ~~v~~~~~--s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~---------------------------------------- 93 (377)
T 3dwl_C 56 KIVTCVDW--APKSNRIVTCSQDRNAYVYEKRPDGTWKQT---------------------------------------- 93 (377)
T ss_dssp SCEEEEEE--CTTTCCEEEEETTSSEEEC------CCCCE----------------------------------------
T ss_pred ceEEEEEE--eCCCCEEEEEeCCCeEEEEEcCCCCceeee----------------------------------------
Confidence 88999999 5667799999999999999998764 0000
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
.. +.+|...|.+++|+|++++|+++ .|+.|++||+++.+.....
T Consensus 94 ----------------------------------~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 138 (377)
T 3dwl_C 94 ----------------------------------LV-LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVS 138 (377)
T ss_dssp ----------------------------------EE-CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCC
T ss_pred ----------------------------------eE-ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceee
Confidence 00 25688899999999999999999 9999999999866531000
Q ss_pred eccCCCcccc-cCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCC--CccceeeccccceeEE
Q 010256 271 VDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP--GTRSFFTEIIASISDI 347 (514)
Q Consensus 271 ~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~ 347 (514)
..+.. |...|.+++|+|++ ++|++++.|+.|++||++.................+ .....+ +|...|.++
T Consensus 139 -----~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~ 211 (377)
T 3dwl_C 139 -----KHLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAV 211 (377)
T ss_dssp -----EEECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEE
T ss_pred -----eEeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEE
Confidence 13445 89999999999998 899999999999999997654321111000000000 011223 788899999
Q ss_pred EEecCCCEEEEEeC-CeEEEEEccCCCCc----eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcE
Q 010256 348 KFARNGRHILSRDY-MTLKLWDINMDSGP----VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (514)
Q Consensus 348 ~~s~~g~~l~~~~~-~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (514)
+|+|++++|++++. +.|++||+.. ++. +..+..|... |.+++|+|++++|++++.|+.+
T Consensus 212 ~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~~~~~~~ 275 (377)
T 3dwl_C 212 GFSPSGNALAYAGHDSSVTIAYPSA-PEQPPRALITVKLSQLP---------------LRSLLWANESAIVAAGYNYSPI 275 (377)
T ss_dssp EECTTSSCEEEEETTTEEC-CEECS-TTSCEEECCCEECSSSC---------------EEEEEEEETTEEEEEESSSSEE
T ss_pred EECCCCCEEEEEeCCCcEEEEECCC-CCCcceeeEeecCCCCc---------------eEEEEEcCCCCEEEEEcCCcEE
Confidence 99999999999865 9999999997 665 6677777654 4499999999999998876655
Q ss_pred EEEecCCCce-ee--------------------------------------------------eeecCCCcceeEEEECC
Q 010256 423 RVFGCSEGSA-ES--------------------------------------------------TTLEASKNPMRRQVQTP 451 (514)
Q Consensus 423 ~iwd~~~~~~-~~--------------------------------------------------~~~~~~~~~v~~~~~~~ 451 (514)
+|+...... .. .....|...|.++.+.+
T Consensus 276 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~ 354 (377)
T 3dwl_C 276 -LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYA 354 (377)
T ss_dssp -EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEE
T ss_pred -EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccC
Confidence 676542210 00 01113899999999765
Q ss_pred CCC----ceeecCCCCeEEE
Q 010256 452 SRP----SRPLGSLSGVVRR 467 (514)
Q Consensus 452 ~~~----~l~s~s~d~~v~i 467 (514)
... .++|++.||.|++
T Consensus 355 ~~~~~~~~~~s~g~Dg~i~i 374 (377)
T 3dwl_C 355 GTPGNITAFTSSGTDGRVVL 374 (377)
T ss_dssp EETTEEEEEEEEETTSEEEE
T ss_pred CCCCceEEEEeecCCCcEEE
Confidence 543 5999999999998
No 66
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.5e-34 Score=276.18 Aligned_cols=277 Identities=11% Similarity=0.195 Sum_probs=223.6
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccccee
Q 010256 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (514)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (514)
.++.|+||++ ++||+|. |++|+|||..+++.. ....+.+|. ..|+
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~---------------------~~~~~~~~~------------~~V~ 151 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL---------------------QLLQMEQPG------------EYIS 151 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE---------------------EEEECCSTT------------CCEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE---------------------EEEEecCCC------------CcEE
Confidence 5788999976 5888875 999999999887742 222345565 7899
Q ss_pred EEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCC
Q 010256 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (514)
Q Consensus 117 ~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (514)
+|+| +++|.+|++|+.||.|++||+.+++....
T Consensus 152 sv~f--spdg~~lasgs~Dg~v~iWd~~~~~~~~~--------------------------------------------- 184 (420)
T 4gga_A 152 SVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRN--------------------------------------------- 184 (420)
T ss_dssp EEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEE---------------------------------------------
T ss_pred EEEE--CCCCCEEEEEECCCeEEEEEcCCCcEEEE---------------------------------------------
Confidence 9999 56888999999999999999998764322
Q ss_pred cccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCC
Q 010256 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (514)
Q Consensus 197 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 275 (514)
..+|...+.++++ ++..|++| .|+.+++||.........
T Consensus 185 --------------------------------~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~------ 224 (420)
T 4gga_A 185 --------------------------------MTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVA------ 224 (420)
T ss_dssp --------------------------------ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE------
T ss_pred --------------------------------EeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeE------
Confidence 1456677877776 46789999 999999999986555433
Q ss_pred CcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCC-
Q 010256 276 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR- 354 (514)
Q Consensus 276 ~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~- 354 (514)
.+.+|...+..+.++|++ .++++++.|+.+++||..+++....... ....|...|.+++|+|++.
T Consensus 225 -~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~------------~~~~~~~~V~~~~~~p~~~~ 290 (420)
T 4gga_A 225 -TLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQ------------TFTQHQGAVKAVAWCPWQSN 290 (420)
T ss_dssp -EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSE------------EECCCSSCEEEEEECTTCTT
T ss_pred -EecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeee------------eecccCCceeeeeeCCCccc
Confidence 467799999999999999 8999999999999999988764322122 2345668899999999765
Q ss_pred EEEEE--e-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe--CCCcEEEEecCC
Q 010256 355 HILSR--D-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS--YSNLFRVFGCSE 429 (514)
Q Consensus 355 ~l~~~--~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~~ 429 (514)
+++++ + |++|++||+.+ ++++..+..+.. +.++.|+|+++.|++++ .|+.|+|||+.+
T Consensus 291 ~la~~~gs~D~~I~iwd~~t-~~~~~~~~~~~~----------------v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~ 353 (420)
T 4gga_A 291 VLATGGGTSDRHIRIWNVCS-GACLSAVDAHSQ----------------VCSILWSPHYKELISGHGFAQNQLVIWKYPT 353 (420)
T ss_dssp EEEEEECTTTCEEEEEETTT-TEEEEEEECSSC----------------EEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred EEEEEeecCCCEEEEEeCCc-cccceeeccccc----------------eeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence 44443 3 59999999997 777777766543 33899999999988765 789999999998
Q ss_pred CceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 430 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 430 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
++. ..++.+|..+|.+++|+|++++|+|||.|++|++
T Consensus 354 ~~~-v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvri 390 (420)
T 4gga_A 354 MAK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRL 390 (420)
T ss_dssp CCE-EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred CcE-EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence 754 5789999999999999999999999999999999
No 67
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=284.49 Aligned_cols=312 Identities=13% Similarity=0.149 Sum_probs=228.4
Q ss_pred cccccceEEEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 32 ~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.+|.+.|++++|+| ++++||+|+.||.|+|||+.+..... ..+....+ +|.
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-----------------~~~~~~~~-~h~---------- 111 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-----------------VYSSSLTY-DCS---------- 111 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-----------------CCSCSEEE-ECS----------
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-----------------ccceeeec-cCC----------
Confidence 47899999999999 99999999999999999987622100 00011112 365
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcC---ccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQ---EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
..|.+++|+ +++.+|++++.||.|++||+. .++.......+ .+. .+.++|
T Consensus 112 --~~v~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~----------~i~-------~~~~~~------ 164 (437)
T 3gre_A 112 --STVTQITMI--PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE----------CIR-------KINLKN------ 164 (437)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE----------EEE-------EEEGGG------
T ss_pred --CCEEEEEEe--CCCCEEEEEeCCCEEEEEEeccccCCceeeccccc----------eeE-------EEEccC------
Confidence 889999995 577799999999999999995 33322221111 000 111111
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEE--ECCCCCEEEEe-cCCeEEEEeccCC
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS--NNSDGETFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~l~s~-~d~~i~iwd~~~~ 264 (514)
.++...+.++. +++++.+|+++ .|+.|++||+++.
T Consensus 165 ------------------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 202 (437)
T 3gre_A 165 ------------------------------------------FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL 202 (437)
T ss_dssp ------------------------------------------GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC
T ss_pred ------------------------------------------cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 11456677777 67899999999 9999999999876
Q ss_pred CceeeeeccCCCcccc--cCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccc
Q 010256 265 NQSFNIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~--~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
+.... +.. |...|++++|+|++ .+|++|+.||.|++||+++++.. ..+. ..|..
T Consensus 203 ~~~~~--------~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~----~~~~-----------~~~~~ 258 (437)
T 3gre_A 203 ERLQI--------IENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLI----RSWS-----------FGDHA 258 (437)
T ss_dssp CEEEE--------EECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEE----EEEB-----------CTTCE
T ss_pred eeeEE--------EccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEE----EEEe-----------cCCCC
Confidence 65443 333 78899999999998 89999999999999999987652 2222 13446
Q ss_pred ceeEEEEe----cCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccccccccccc-----------ccCCccceeeEEE
Q 010256 343 SISDIKFA----RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLY-----------ENDSIFDKFECCL 406 (514)
Q Consensus 343 ~i~~~~~s----~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~ 406 (514)
.|.+++|+ |++++|++++. +.|++||+++ ++.+..+..|........-.. .......|.+++|
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~ 337 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISV 337 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEE
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEE
Confidence 89999665 46889999865 9999999997 888888887754332111100 0012234669999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCceeeeeecC-------------------------------------CCcceeEEEE
Q 010256 407 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-------------------------------------SKNPMRRQVQ 449 (514)
Q Consensus 407 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------------------------~~~~v~~~~~ 449 (514)
+ ++++|++|+.||.|++||+.+++.. ..+.+ |...|.++++
T Consensus 338 ~-~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~ 415 (437)
T 3gre_A 338 S-NDKILLTDEATSSIVMFSLNELSSS-KAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSIST 415 (437)
T ss_dssp E-TTEEEEEEGGGTEEEEEETTCGGGC-EEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEE
T ss_pred C-CceEEEecCCCCeEEEEECCCcccc-eEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEee
Confidence 9 8899999999999999999987543 34443 8899999999
Q ss_pred CCC--CCceeecCCCCeEEE
Q 010256 450 TPS--RPSRPLGSLSGVVRR 467 (514)
Q Consensus 450 ~~~--~~~l~s~s~d~~v~i 467 (514)
+++ +.+|++|+.||.|++
T Consensus 416 ~~~~~~~~l~s~~~dG~I~i 435 (437)
T 3gre_A 416 CEVDETPLLVACDNSGLIGI 435 (437)
T ss_dssp EESSSSEEEEEEETTSCEEE
T ss_pred eccCCceEEEEEcCCceEEE
Confidence 988 889999999999998
No 68
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-35 Score=280.00 Aligned_cols=291 Identities=14% Similarity=0.191 Sum_probs=229.6
Q ss_pred cccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
|.+.|++++|+|++++|++|+.||.|++|+ .+++ ....+.+|. .
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~-----------------------~~~~~~~~~------------~ 150 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGA-----------------------LLNVLNFHR------------A 150 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSC-----------------------EEEEECCCC------------S
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCC-----------------------eeeeccCCC------------c
Confidence 688999999999999999999999999999 3332 345677787 8
Q ss_pred ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
.|.+++| ++++.+|++++.|+.|++||+.+++.......+....
T Consensus 151 ~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------------------------------- 194 (425)
T 1r5m_A 151 PIVSVKW--NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG---------------------------------- 194 (425)
T ss_dssp CEEEEEE--CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------------------------------
T ss_pred cEEEEEE--CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc----------------------------------
Confidence 8999999 5677899999999999999999987665544331100
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeec
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 272 (514)
..+.. .. .......+.+++|+|++. ++++ .++.|++||+++.+...
T Consensus 195 -----------~~~~~----------------~~-~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~~~~---- 241 (425)
T 1r5m_A 195 -----------SSINA----------------EN-HSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTG---- 241 (425)
T ss_dssp ---------------------------------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSSCSE----
T ss_pred -----------cceee----------------cc-ccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCceee----
Confidence 00000 00 022234477888998865 5555 99999999998665433
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 352 (514)
.+..|...|.+++|+|++ .+|++++.|+.|++||+++++.. .. +.+|...|.+++|+|+
T Consensus 242 ----~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~------------~~~~~~~i~~~~~~~~ 300 (425)
T 1r5m_A 242 ----KLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQ----NC------------FYGHSQSIVSASWVGD 300 (425)
T ss_dssp ----EECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCS----EE------------ECCCSSCEEEEEEETT
T ss_pred ----eeccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccc----eE------------ecCCCccEEEEEECCC
Confidence 345688999999999999 89999999999999999887642 22 3445678999999999
Q ss_pred CCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCc
Q 010256 353 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (514)
Q Consensus 353 g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 431 (514)
+ ++++++ ++.|++||+.+ ++.+..+..|... +.+++|+|++++|++++.||.|++||+.++.
T Consensus 301 ~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 301 D-KVISCSMDGSVRLWSLKQ-NTLLALSIVDGVP---------------IFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp T-EEEEEETTSEEEEEETTT-TEEEEEEECTTCC---------------EEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred C-EEEEEeCCCcEEEEECCC-CcEeEecccCCcc---------------EEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 9 777765 59999999987 7777777776544 4489999999999999999999999998764
Q ss_pred -------------------eeeeeecCCCc--ceeEEEECCCCCceeecCCCCeEEE
Q 010256 432 -------------------AESTTLEASKN--PMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 432 -------------------~~~~~~~~~~~--~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.....+.+|.. .|..+.|+|++++|++++.||.|++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 420 (425)
T 1r5m_A 364 SKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSV 420 (425)
T ss_dssp C--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEE
T ss_pred cceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEE
Confidence 04578888876 9999999999999999999999998
No 69
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-34 Score=271.80 Aligned_cols=263 Identities=13% Similarity=0.172 Sum_probs=204.4
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|++++||+|+.||.|+||++..... .....+.+|.
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---------------------~~~~~~~~h~---------- 55 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHE---------- 55 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---------------------EEEEEECCCS----------
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc---------------------eeeeEecCCC----------
Confidence 458999999999999999999999999999999874322 2556788888
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|++++|++..++.+|++++.||.|++||+.+++......
T Consensus 56 --~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------------------------------------- 96 (379)
T 3jrp_A 56 --GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV------------------------------------- 96 (379)
T ss_dssp --SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE-------------------------------------
T ss_pred --CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee-------------------------------------
Confidence 88999999665457899999999999999998875322111
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCCCce
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
...|...|.+++|+|+ +.+|+++ .|+.|++||++.....
T Consensus 97 --------------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 138 (379)
T 3jrp_A 97 --------------------------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT 138 (379)
T ss_dssp --------------------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC
T ss_pred --------------------------------------ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce
Confidence 2457788999999999 9999999 9999999999866433
Q ss_pred eeeeccCCCcccccCCceEEEEEec-------------CCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCcc
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHP-------------THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p-------------~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 334 (514)
... .+..|...|.+++|+| ++ .+|++++.|+.|++||++++.......
T Consensus 139 ~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~------------ 199 (379)
T 3jrp_A 139 SPI------IIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLE------------ 199 (379)
T ss_dssp CEE------EEECCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEE------------
T ss_pred eeE------EecCCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeE------------
Confidence 222 4567889999999999 56 899999999999999998765321111
Q ss_pred ceeeccccceeEEEEecC---CCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC
Q 010256 335 SFFTEIIASISDIKFARN---GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (514)
Q Consensus 335 ~~~~~~~~~i~~~~~s~~---g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (514)
..+.+|...|.+++|+|+ +++|++++ |+.|++||+.. +............ .....+.+++|+|++
T Consensus 200 ~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~----------~~~~~v~~~~~s~~g 268 (379)
T 3jrp_A 200 STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN-EQGPWKKTLLKEE----------KFPDVLWRASWSLSG 268 (379)
T ss_dssp EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS-TTSCCEEEESSSS----------CCSSCEEEEEECSSS
T ss_pred EEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC-CCccceeeeeccc----------cCCCcEEEEEEcCCC
Confidence 124567789999999999 89999976 59999999987 3311111110000 011125589999999
Q ss_pred CEEEEEeCCCcEEEEecCCCc
Q 010256 411 GRVATGSYSNLFRVFGCSEGS 431 (514)
Q Consensus 411 ~~l~s~~~dg~i~iwd~~~~~ 431 (514)
++|++++.||.|++|++....
T Consensus 269 ~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 269 NVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp CCEEEEESSSSEEEEEEEETT
T ss_pred CEEEEecCCCcEEEEeCCCCC
Confidence 999999999999999998543
No 70
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=265.40 Aligned_cols=298 Identities=15% Similarity=0.168 Sum_probs=232.5
Q ss_pred ceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceec
Q 010256 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (514)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (514)
......+.+|. ..|++++| ++++.+|++++.||.|++||+.+++....
T Consensus 22 ~~~~~~l~~h~------------~~v~~~~~--s~~~~~l~~~~~dg~i~vwd~~~~~~~~~------------------ 69 (369)
T 3zwl_B 22 HMKAIKLTGHE------------RPLTQVKY--NKEGDLLFSCSKDSSASVWYSLNGERLGT------------------ 69 (369)
T ss_dssp SEEEEEEECCS------------SCEEEEEE--CTTSCEEEEEESSSCEEEEETTTCCEEEE------------------
T ss_pred ccccEEEEEee------------ceEEEEEE--cCCCCEEEEEeCCCEEEEEeCCCchhhhh------------------
Confidence 33445678888 89999999 56788999999999999999987653221
Q ss_pred ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE
Q 010256 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 249 (514)
+.+|...|.+++|+|++++|+
T Consensus 70 -----------------------------------------------------------~~~h~~~v~~~~~~~~~~~l~ 90 (369)
T 3zwl_B 70 -----------------------------------------------------------LDGHTGTIWSIDVDCFTKYCV 90 (369)
T ss_dssp -----------------------------------------------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred -----------------------------------------------------------hhhcCCcEEEEEEcCCCCEEE
Confidence 246778999999999999999
Q ss_pred Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC-----CeEEEEEcCCCcccccccc
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDMRQSALCDTHSK 323 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~ 323 (514)
++ .|+.|++||+++++.... +. +...+.+++|+|++ .++++++.+ +.|++||++......
T Consensus 91 s~~~dg~i~iwd~~~~~~~~~--------~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~---- 156 (369)
T 3zwl_B 91 TGSADYSIKLWDVSNGQCVAT--------WK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATH---- 156 (369)
T ss_dssp EEETTTEEEEEETTTCCEEEE--------EE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTC----
T ss_pred EEeCCCeEEEEECCCCcEEEE--------ee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccce----
Confidence 99 999999999987655432 22 67889999999999 899999998 999999998765421
Q ss_pred ceeccCCCCccceeecccc--ceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccc
Q 010256 324 LFEEQEAPGTRSFFTEIIA--SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 400 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
.+.... ......+..|.. .+.+++|+|++++|++++. +.|++||++...+.+..+..|...
T Consensus 157 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--------------- 220 (369)
T 3zwl_B 157 ELTKVS-EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS--------------- 220 (369)
T ss_dssp CEEEEC-SSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSC---------------
T ss_pred eecccc-cceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc---------------
Confidence 111111 111223444555 8999999999999999865 999999998645667777776654
Q ss_pred eeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCC--------------eEE
Q 010256 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG--------------VVR 466 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~--------------~v~ 466 (514)
|.+++|+|++++|++++.||.|++||+.++... ..+. +..++..+.++|+++++++++.++ .++
T Consensus 221 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 298 (369)
T 3zwl_B 221 ISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL-KKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR 298 (369)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-EEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEE
T ss_pred eeEEEECCCCCEEEEecCCceEEEEECCCCcee-eeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeE
Confidence 448999999999999999999999999987543 4444 778899999999999999999988 566
Q ss_pred EeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 467 RVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 467 i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
+.+.... ........|...|++++|+|++++|++++ ++.+++|.
T Consensus 299 ~~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 299 FYHKIFE---EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHH 343 (369)
T ss_dssp EEETTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEecCCC---cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 6322111 12222335889999999999999999888 55688885
No 71
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.2e-34 Score=269.28 Aligned_cols=287 Identities=10% Similarity=0.039 Sum_probs=227.1
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
+|.+.|++++|+|++++|++|+.||.|+||++.+++.. .....+.+|.
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~--------------------~~~~~~~~~~------------ 56 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN--------------------VDLLQSLRYK------------ 56 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE--------------------EEEEEEEECS------------
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc--------------------ccceeeeecC------------
Confidence 79999999999999999999999999999999866511 1123344676
Q ss_pred cceeEEEEeeCCCCc-EEEEeeCCCeEEEEEc-CccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 113 EKINKIRWCQSANSA-LYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~-~l~s~~~d~~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++|+| ++. +|++++.||.|++||+ .+++...
T Consensus 57 ~~v~~~~~~~--~~~~~l~~~~~dg~i~~wd~~~~~~~~~---------------------------------------- 94 (342)
T 1yfq_A 57 HPLLCCNFID--NTDLQIYVGTVQGEILKVDLIGSPSFQA---------------------------------------- 94 (342)
T ss_dssp SCEEEEEEEE--SSSEEEEEEETTSCEEEECSSSSSSEEE----------------------------------------
T ss_pred CceEEEEECC--CCCcEEEEEcCCCeEEEEEeccCCceEe----------------------------------------
Confidence 8899999964 578 8999999999999999 7654210
Q ss_pred CCCCCCcccCCCCCCcEEeceeecccccccccccccccccc--CccCeEEEEECCCCCEEEEe-cCCeEEEEeccC----
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA--HDYHINSISNNSDGETFISA-DDLRINLWNLEI---- 263 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~---- 263 (514)
+.+ |...|.+++|+| +..|+++ .|+.|++||+++
T Consensus 95 --------------------------------------~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~ 135 (342)
T 1yfq_A 95 --------------------------------------LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDG 135 (342)
T ss_dssp --------------------------------------CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTB
T ss_pred --------------------------------------ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccc
Confidence 134 778999999999 9999999 999999999985
Q ss_pred -----CCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCC-CccccccccceeccCCCCcccee
Q 010256 264 -----SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFF 337 (514)
Q Consensus 264 -----~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 337 (514)
.+... .+. |...+.+++|+|++ +++++.|+.|++||+++ +.... . ...
T Consensus 136 ~~~~~~~~~~--------~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~---~-----------~~~ 189 (342)
T 1yfq_A 136 VIAVKNLNSN--------NTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNG---T-----------IEE 189 (342)
T ss_dssp CEEEEESCSS--------SSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCC---E-----------EEE
T ss_pred cccccCCeee--------EEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccc---e-----------eee
Confidence 32221 233 78899999999874 89999999999999987 54210 0 112
Q ss_pred eccccceeEEEEec-CCCEEEEEeC-CeEEEEEccCC-----CCceeeeeeccccccccccccccCCccceeeEEEcCCC
Q 010256 338 TEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMD-----SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (514)
Q Consensus 338 ~~~~~~i~~~~~s~-~g~~l~~~~~-~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (514)
..|...+.+++|+| +++++++++. +.|++|+++.. .+....+..|..... .......|.+++|+|++
T Consensus 190 ~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~s~~~ 263 (342)
T 1yfq_A 190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK------DTNLAYPVNSIEFSPRH 263 (342)
T ss_dssp CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTT------CCSSCCCEEEEEECTTT
T ss_pred cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccc------ccccceeEEEEEEcCCC
Confidence 23457899999999 9999999865 99999999873 277777877754210 00111235699999999
Q ss_pred CEEEEEeCCCcEEEEecCCCceeeeeecCC-CcceeEEEECCCCCceeecCCCCe-EEE
Q 010256 411 GRVATGSYSNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPLGSLSGV-VRR 467 (514)
Q Consensus 411 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~s~d~~-v~i 467 (514)
++|++++.||.|++||+.+++ ....+.+| ..+|.+++ |++++|++++.|++ .+.
T Consensus 264 ~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~ 319 (342)
T 1yfq_A 264 KFLYTAGSDGIISCWNLQTRK-KIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTN 319 (342)
T ss_dssp CCEEEEETTSCEEEEETTTTE-EEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHC
T ss_pred CEEEEecCCceEEEEcCccHh-HhhhhhcccCCCceEec--CCCCeEEEEecCCccccc
Confidence 999999999999999999874 45778888 99999999 99999999999998 444
No 72
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3e-34 Score=263.79 Aligned_cols=284 Identities=16% Similarity=0.242 Sum_probs=220.7
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccccee
Q 010256 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (514)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (514)
..++|+||+++ +||+| .|++|+|||+.+++.. ....+.+|. ..|+
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~---------------------~~~~~~~~~------------~~V~ 71 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDIL---------------------QLLQMEQPG------------EYIS 71 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEE---------------------EEEECCSTT------------CCEE
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEE---------------------EEEEecCCC------------CeEE
Confidence 46889999986 78876 4999999999887742 122344565 7899
Q ss_pred EEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCC
Q 010256 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (514)
Q Consensus 117 ~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (514)
+++| ++++++|++|+.||+|++|++++++.......+... ...+++++..+
T Consensus 72 ~v~~--~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~-----------------~~~~~~~~~~l---------- 122 (318)
T 4ggc_A 72 SVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR-----------------VGSLSWNSYIL---------- 122 (318)
T ss_dssp EEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-----------------EEEEEEETTEE----------
T ss_pred EEEE--CCCCCEEEEEECCCcEEEeecCCceeEEEecCccce-----------------EEEeecCCCEE----------
Confidence 9999 567889999999999999999999877766554211 33566677776
Q ss_pred cccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCC
Q 010256 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (514)
Q Consensus 197 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 275 (514)
++++.++.+++|+ ..... .....+.+|...+..+.+++++++|+++ .|++|++||+++++......
T Consensus 123 --~s~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---- 189 (318)
T 4ggc_A 123 --SSGSRSGHIHHHD-VRVAE------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL---- 189 (318)
T ss_dssp --EEEETTSEEEEEE-TTSSS------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS----
T ss_pred --EEEecCCceEeee-cCCCc------eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce----
Confidence 8999999999888 22211 1112247899999999999999999999 99999999998655332211
Q ss_pred CcccccCCceEEEEEecCCCcEE--EEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 276 ANMEDLTEVITSAEFHPTHCNML--AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 276 ~~~~~~~~~i~~v~~~p~~~~~l--~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
.....+...|.++.++|++..++ ++++.++.|++||.+...... ...+...+..+.|+|++
T Consensus 190 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~-----------------~~~~~~~v~~~~~~~~~ 252 (318)
T 4ggc_A 190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS-----------------AVDAHSQVCSILWSPHY 252 (318)
T ss_dssp EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE-----------------EEECSSCEEEEEEETTT
T ss_pred eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc-----------------cccceeeeeeeeecccc
Confidence 13455778899999999885655 356678999999998765421 12233679999999999
Q ss_pred CEEEEEe---CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 354 RHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 354 ~~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
..+++++ ++.|++||+++ ++++.++.+|... |++++|+|||++|++|+.||.|+|||+.+.
T Consensus 253 ~~~~~~sg~~d~~i~iwd~~~-~~~~~~l~gH~~~---------------V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 253 KELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSR---------------VLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TEEEEEECTTTCCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred cceEEEEEcCCCEEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9888743 59999999997 8999999998765 459999999999999999999999999754
No 73
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.5e-34 Score=264.71 Aligned_cols=290 Identities=16% Similarity=0.178 Sum_probs=223.6
Q ss_pred eeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEE---EEEeeccCCCccccCCcce
Q 010256 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV---KKVFDWNVHPEKAAGNGPI 167 (514)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~v 167 (514)
.+..+++||. +.|++|+|+|. ++++|++|+.|++|++||+.+.+. .....+..+ ...|
T Consensus 29 ~l~~tL~GH~------------~~V~~v~~sp~-~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h------~~~V 89 (340)
T 4aow_A 29 TLRGTLKGHN------------GWVTQIATTPQ-FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH------SHFV 89 (340)
T ss_dssp EEEEEECCCS------------SCEEEEEECTT-CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCC------SSCE
T ss_pred EEEEEECCcc------------CCEEEEEEeCC-CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCC------CCCE
Confidence 3567899999 99999999653 256999999999999999976531 111122211 2344
Q ss_pred ecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCE
Q 010256 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 247 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 247 (514)
. .+.|+|+++.+ ++++.|+.|++|+ ...... ... ...+...+..+.+++++++
T Consensus 90 ~-------~~~~s~dg~~l------------~s~~~d~~i~~~~-~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~ 142 (340)
T 4aow_A 90 S-------DVVISSDGQFA------------LSGSWDGTLRLWD-LTTGTT------TRR-FVGHTKDVLSVAFSSDNRQ 142 (340)
T ss_dssp E-------EEEECTTSSEE------------EEEETTSEEEEEE-TTTTEE------EEE-EECCSSCEEEEEECTTSSC
T ss_pred E-------EEEECCCCCEE------------EEEcccccceEEe-ecccce------eee-ecCCCCceeEEEEeecCcc
Confidence 4 88999999998 9999999999999 322211 111 2566678889999999999
Q ss_pred EEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCC-cEEEEEecCCeEEEEEcCCCccccccccce
Q 010256 248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (514)
Q Consensus 248 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 325 (514)
|+++ .|+.+++||+........ ...+|...+..++|++++. .++++++.|+.|++||+++++.. .
T Consensus 143 l~s~s~d~~~~~~d~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~----~-- 209 (340)
T 4aow_A 143 IVSGSRDKTIKLWNTLGVCKYTV-------QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK----T-- 209 (340)
T ss_dssp EEEEETTSCEEEECTTSCEEEEE-------CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEE----E--
T ss_pred ceeecCCCeEEEEEeCCCceEEE-------EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCcee----e--
Confidence 9999 999999999875443321 4567889999999998752 47889999999999999987652 2
Q ss_pred eccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeE
Q 010256 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (514)
.+.+|.+.|++++|+|++++|++|+. +.|++||++. .+++..+..+.. +.++
T Consensus 210 ----------~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~----------------v~~~ 262 (340)
T 4aow_A 210 ----------NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE-GKHLYTLDGGDI----------------INAL 262 (340)
T ss_dssp ----------EECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT-TEEEEEEECSSC----------------EEEE
T ss_pred ----------EecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc-CceeeeecCCce----------------EEee
Confidence 24556689999999999999999764 9999999997 777777665532 3489
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCceee--------eeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 405 CLSGDGGRVATGSYSNLFRVFGCSEGSAES--------TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 405 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+|+|++.++ +++.|+.|++||++++.... ....+|...|.+++|+|++++|++|+.||.|++
T Consensus 263 ~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~i 332 (340)
T 4aow_A 263 CFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332 (340)
T ss_dssp EECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 999988765 55678999999998763321 223478899999999999999999999999999
No 74
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.4e-35 Score=275.87 Aligned_cols=284 Identities=12% Similarity=0.225 Sum_probs=214.8
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeecc-CCCccccccccccccce
Q 010256 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~v 115 (514)
.+.+++|++ ..+++++.||.|++|++.+++.. ..+.. |. ..|
T Consensus 95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~-----------------------~~~~~~~~------------~~v 137 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVALERNVYVWNADSGSVS-----------------------ALAETDES------------TYV 137 (401)
T ss_dssp TCBCEEECT--TSEEEEEETTEEEEEETTTCCEE-----------------------EEEECCTT------------CCE
T ss_pred eEEEEeecC--CCEEEEECCCeEEEeeCCCCcEe-----------------------EeeecCCC------------CCE
Confidence 355566664 56888889999999999877632 22332 55 789
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
.+++| ++++.+|++++.||.|++||+.+++.......+ .+.+. .+.| +++.+
T Consensus 138 ~~v~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~~v~-------~~~~--~~~~l--------- 189 (401)
T 4aez_A 138 ASVKW--SHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGH--------QARVG-------CLSW--NRHVL--------- 189 (401)
T ss_dssp EEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEEECCC--------SSCEE-------EEEE--ETTEE---------
T ss_pred EEEEE--CCCCCEEEEECCCCeEEEEECcCCeEEEEecCC--------CCceE-------EEEE--CCCEE---------
Confidence 99999 557889999999999999999998766655433 23333 5556 55666
Q ss_pred CcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccC
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~ 274 (514)
++++.++.|++|| +.... ..... +.+|...|.+++|+|++++|+++ .|+.|++||+++.....
T Consensus 190 ---~~~~~dg~i~i~d-~~~~~-----~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~------ 253 (401)
T 4aez_A 190 ---SSGSRSGAIHHHD-VRIAN-----HQIGT-LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF------ 253 (401)
T ss_dssp ---EEEETTSEEEEEE-TTSSS-----CEEEE-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEE------
T ss_pred ---EEEcCCCCEEEEe-cccCc-----ceeeE-EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccE------
Confidence 9999999999999 33211 11222 37899999999999999999999 89999999998655443
Q ss_pred CCcccccCCceEEEEEecCCCcEEEEEe--cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC
Q 010256 275 PANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (514)
Q Consensus 275 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 352 (514)
.+..|...|.+++|+|++..++++++ .|+.|++||+++++.. ..+. +...|.+++|+|+
T Consensus 254 --~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~----~~~~-------------~~~~v~~~~~s~~ 314 (401)
T 4aez_A 254 --TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV----NTVD-------------AGSQVTSLIWSPH 314 (401)
T ss_dssp --EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE----EEEE-------------CSSCEEEEEECSS
T ss_pred --EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE----EEEe-------------CCCcEEEEEECCC
Confidence 34668899999999998867888876 7999999999987652 2222 2357999999999
Q ss_pred CCEEEE--E-eCCeEEEEEccCCCCceee--eeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 353 GRHILS--R-DYMTLKLWDINMDSGPVAT--FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 353 g~~l~~--~-~~~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
++++++ | .++.|++||+.. +..... +..|... |.+++|+|++++|++++.||.|++|++
T Consensus 315 ~~~l~~~~g~~dg~i~v~~~~~-~~~~~~~~~~~h~~~---------------v~~~~~s~dg~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 315 SKEIMSTHGFPDNNLSIWSYSS-SGLTKQVDIPAHDTR---------------VLYSALSPDGRILSTAASDENLKFWRV 378 (401)
T ss_dssp SSEEEEEECTTTCEEEEEEEET-TEEEEEEEEECCSSC---------------CCEEEECTTSSEEEEECTTSEEEEEEC
T ss_pred CCeEEEEeecCCCcEEEEecCC-ccceeEEEecCCCCC---------------EEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 999998 4 259999999986 444433 4455443 348999999999999999999999999
Q ss_pred CCCceeeee
Q 010256 428 SEGSAESTT 436 (514)
Q Consensus 428 ~~~~~~~~~ 436 (514)
.+++.....
T Consensus 379 ~~~~~~~~~ 387 (401)
T 4aez_A 379 YDGDHVKRP 387 (401)
T ss_dssp CC-------
T ss_pred CCCcccccc
Confidence 987554333
No 75
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-34 Score=263.09 Aligned_cols=276 Identities=16% Similarity=0.179 Sum_probs=222.4
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++| |++++|++|+.||.|++||+.+++ ....+..|.
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-----------------------~~~~~~~~~---------- 59 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-----------------------LGTVVYTGQ---------- 59 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-----------------------EEEEEEECS----------
T ss_pred hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-----------------------EEEEeecCC----------
Confidence 4589999999999 999999999999999999997655 335566776
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++|+ +++.++++++.|+.|++|++..... ++
T Consensus 60 --~~v~~~~~~--~~~~~l~~~~~dg~i~~~~~~~~~~----------------------------------~~------ 95 (313)
T 3odt_A 60 --GFLNSVCYD--SEKELLLFGGKDTMINGVPLFATSG----------------------------------ED------ 95 (313)
T ss_dssp --SCEEEEEEE--TTTTEEEEEETTSCEEEEETTCCTT----------------------------------SC------
T ss_pred --ccEEEEEEC--CCCCEEEEecCCCeEEEEEeeecCC----------------------------------CC------
Confidence 889999995 5778999999999999999865310 00
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
.... +.+|...|.+++| +++.++++ .|+.|++||. .....
T Consensus 96 ---------------------------------~~~~-~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~--~~~~~- 136 (313)
T 3odt_A 96 ---------------------------------PLYT-LIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE--GSLVY- 136 (313)
T ss_dssp ---------------------------------C-CE-ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--TEEEE-
T ss_pred ---------------------------------cccc-hhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--CcEEE-
Confidence 0001 2578889999999 57789998 9999999992 23222
Q ss_pred eeccCCCcccccCCceEEEEEec-CCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
.+..|...+.++.|+| ++ .++++++.|+.|++||.... ...+.. .|...+.+++
T Consensus 137 -------~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~------~~~~~~-----------~~~~~i~~~~ 191 (313)
T 3odt_A 137 -------NLQAHNASVWDAKVVSFSE-NKFLTASADKTIKLWQNDKV------IKTFSG-----------IHNDVVRHLA 191 (313)
T ss_dssp -------EEECCSSCEEEEEEEETTT-TEEEEEETTSCEEEEETTEE------EEEECS-----------SCSSCEEEEE
T ss_pred -------ecccCCCceeEEEEccCCC-CEEEEEECCCCEEEEecCce------EEEEec-----------cCcccEEEEE
Confidence 3566899999999998 66 89999999999999994321 122221 1557899999
Q ss_pred EecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 349 FARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 349 ~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
|+|++. ++++ .++.|++||+++ ++++..+..|... +.+++|+|++ .|++++.||.|++||+
T Consensus 192 ~~~~~~-~~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~~~~~-~l~~~~~dg~v~iwd~ 253 (313)
T 3odt_A 192 VVDDGH-FISCSNDGLIKLVDMHT-GDVLRTYEGHESF---------------VYCIKLLPNG-DIVSCGEDRTVRIWSK 253 (313)
T ss_dssp EEETTE-EEEEETTSEEEEEETTT-CCEEEEEECCSSC---------------EEEEEECTTS-CEEEEETTSEEEEECT
T ss_pred EcCCCe-EEEccCCCeEEEEECCc-hhhhhhhhcCCce---------------EEEEEEecCC-CEEEEecCCEEEEEEC
Confidence 999998 5555 569999999997 8888888877654 4499999999 5889999999999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEe
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV 468 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~ 468 (514)
.+++ ....+..|..++.+++|+|+++ +++++.|+.|+++
T Consensus 254 ~~~~-~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw 292 (313)
T 3odt_A 254 ENGS-LKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIF 292 (313)
T ss_dssp TTCC-EEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEE
T ss_pred CCCc-eeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEE
Confidence 9874 4478889999999999999998 5678999999993
No 76
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.2e-35 Score=278.85 Aligned_cols=281 Identities=14% Similarity=0.206 Sum_probs=201.2
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|++|+|+|. ++.+|++|+.||.|+|||+.+++.....
T Consensus 120 ~~V~~l~~~P~-~~~~lasGs~dg~i~lWd~~~~~~~~~~---------------------------------------- 158 (435)
T 4e54_B 120 RRATSLAWHPT-HPSTVAVGSKGGDIMLWNFGIKDKPTFI---------------------------------------- 158 (435)
T ss_dssp SCEEEEEECSS-CTTCEEEEETTSCEEEECSSCCSCCEEE----------------------------------------
T ss_pred CCEEEEEEeCC-CCCEEEEEeCCCEEEEEECCCCCceeEE----------------------------------------
Confidence 78999999764 3468999999999999998765311110
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
...+|.+.|++++|+| ++++|++| .|++|++||++..... .+
T Consensus 159 -----------------------------------~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~-~~ 202 (435)
T 4e54_B 159 -----------------------------------KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR-VF 202 (435)
T ss_dssp -----------------------------------CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE-EE
T ss_pred -----------------------------------EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee-EE
Confidence 0257899999999998 68899999 9999999999843322 11
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
. ....+...+.+++|+|++ .+|++|+.||.|++||++... +.. +.+|...|.+++|+
T Consensus 203 ~-----~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~-----~~~------------~~~h~~~v~~v~~~ 259 (435)
T 4e54_B 203 A-----SSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKE-----LWN------------LRMHKKKVTHVALN 259 (435)
T ss_dssp E-----CCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCB-----CCC------------SBCCSSCEEEEEEC
T ss_pred e-----ccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcce-----eEE------------EecccceEEeeeec
Confidence 1 223345667899999999 899999999999999987533 222 45567899999999
Q ss_pred cCCC-EEEEEe-CCeEEEEEccCCCCceeee---eeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEE
Q 010256 351 RNGR-HILSRD-YMTLKLWDINMDSGPVATF---QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (514)
Q Consensus 351 ~~g~-~l~~~~-~~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (514)
|++. ++++++ |+.|+|||++. .+....+ ..|... |.+++|+|+|++|++++.||.|+||
T Consensus 260 p~~~~~~~s~s~d~~v~iwd~~~-~~~~~~~~~~~~h~~~---------------v~~~~~spdg~~l~s~~~D~~i~iw 323 (435)
T 4e54_B 260 PCCDWFLATASVDQTVKIWDLRQ-VRGKASFLYSLPHRHP---------------VNAACFSPDGARLLTTDQKSEIRVY 323 (435)
T ss_dssp TTCSSEEEEEETTSBCCEEETTT-CCSSSCCSBCCBCSSC---------------EEECCBCTTSSEEEEEESSSCEEEE
T ss_pred CCCceEEEEecCcceeeEEeccc-ccccceEEEeeecccc---------------ccceeECCCCCeeEEEcCCCEEEEE
Confidence 9887 566665 59999999986 4433322 334332 4589999999999999999999999
Q ss_pred ecCCCceeeeeecCCCc------ceeEEEECCCCCceeec-----------C-CCCeEEEeeCCCCCccccCCc-ccccc
Q 010256 426 GCSEGSAESTTLEASKN------PMRRQVQTPSRPSRPLG-----------S-LSGVVRRVKGADNSALDANGN-AFDFS 486 (514)
Q Consensus 426 d~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~s~-----------s-~d~~v~i~~~~~~~~~~~~~~-~~~~~ 486 (514)
|+.++... ..+..|.. .+....++|++.+++++ + .++.|++++...-. .... ...|.
T Consensus 324 d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~---~~~~l~~~~~ 399 (435)
T 4e54_B 324 SASQWDCP-LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK---MMCQLYDPES 399 (435)
T ss_dssp ESSSSSSE-EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC---EEEEECCSSC
T ss_pred ECCCCccc-eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc---EEEEEeCCCC
Confidence 99987544 33333321 12233445544444433 2 34578884332211 1111 12467
Q ss_pred cceEEE-EEcCCCCEEEEEecCcEEEEe
Q 010256 487 MKLLHL-AWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 487 ~~v~~~-~~spd~~~l~~~~~~~~~i~~ 513 (514)
..|.++ +|||+|++||+|+++.++||+
T Consensus 400 ~~v~s~~~fspdg~~lasg~d~~i~iW~ 427 (435)
T 4e54_B 400 SGISSLNEFNPMGDTLASAMGYHILIWS 427 (435)
T ss_dssp CCCCCEEEECTTSSCEEEECSSEEEECC
T ss_pred CcEEEEEEECCCCCEEEEEcCCcEEEEE
Confidence 788887 799999999999999999997
No 77
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.7e-34 Score=267.50 Aligned_cols=291 Identities=11% Similarity=0.139 Sum_probs=218.2
Q ss_pred cceeeeeeccCCCccccccccccccceeEEEEeeCCCC-cEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcce
Q 010256 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI 167 (514)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v 167 (514)
.+.....+.+|. ..|++++|+ +++ .+|++++.|+.|++||+.+++......
T Consensus 62 ~~~~~~~~~~h~------------~~v~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------- 113 (383)
T 3ei3_B 62 SYKLHRTASPFD------------RRVTSLEWH--PTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ-------------- 113 (383)
T ss_dssp TCEEEEEECCCS------------SCEEEEEEC--SSCTTEEEEEEBTSCEEEEETTSTTCEEEEC--------------
T ss_pred ccceEEeccCCC------------CCEEEEEEC--CCCCCEEEEEcCCCeEEEEeCCCcccceeee--------------
Confidence 344566778888 889999995 555 799999999999999998654221110
Q ss_pred ecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCC
Q 010256 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGE 246 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~ 246 (514)
..+|...|.+++|+| +++
T Consensus 114 -------------------------------------------------------------~~~h~~~v~~~~~~~~~~~ 132 (383)
T 3ei3_B 114 -------------------------------------------------------------GMGPGDAITGMKFNQFNTN 132 (383)
T ss_dssp -------------------------------------------------------------CCSTTCBEEEEEEETTEEE
T ss_pred -------------------------------------------------------------cCCcCCceeEEEeCCCCCC
Confidence 146888999999999 688
Q ss_pred EEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccce
Q 010256 247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (514)
Q Consensus 247 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 325 (514)
+|+++ .|+.|++||++. .....+. ....+...|.+++|+|++ .+|++|+.|+.|++||++. +. ..
T Consensus 133 ~l~s~~~d~~i~iwd~~~-~~~~~~~-----~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~-~~----~~-- 198 (383)
T 3ei3_B 133 QLFVSSIRGATTLRDFSG-SVIQVFA-----KTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLDG-HE----IF-- 198 (383)
T ss_dssp EEEEEETTTEEEEEETTS-CEEEEEE-----CCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETTS-CE----EE--
T ss_pred EEEEEeCCCEEEEEECCC-CceEEEe-----ccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECCC-CE----EE--
Confidence 99999 999999999984 3322221 223456889999999999 8999999999999999953 32 22
Q ss_pred eccCCCCccceeeccccceeEEEEecCCC-EEEEEe-CCeEEEEEccCC---CCceeeeeeccccccccccccccCCccc
Q 010256 326 EEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRD-YMTLKLWDINMD---SGPVATFQVHEHLRPKLCDLYENDSIFD 400 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~-~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
.+.+|...|.+++|+|+++ ++++++ |+.|++||++.. ...+..+ .|...
T Consensus 199 ----------~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~--------------- 252 (383)
T 3ei3_B 199 ----------KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKP--------------- 252 (383)
T ss_dssp ----------EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSC---------------
T ss_pred ----------EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCc---------------
Confidence 2455668999999999999 888876 599999999862 2233333 44433
Q ss_pred eeeEEEcC-CCCEEEEEeCCCcEEEEecCCCceeeeeecCCC-----------------cceeEEEECCCCCceeecCCC
Q 010256 401 KFECCLSG-DGGRVATGSYSNLFRVFGCSEGSAESTTLEASK-----------------NPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 401 v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~l~s~s~d 462 (514)
|.+++|+| ++++|++++.|+.|++||+.++... ..+.+|. ..+..+.++|++++ +++.|
T Consensus 253 v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d 329 (383)
T 3ei3_B 253 VNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP-DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDK 329 (383)
T ss_dssp EEEEEECTTTSCEEEEEESSSEEEEEETTBTTSC-SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCC
T ss_pred eEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccc-cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCC
Confidence 45999999 9999999999999999999887543 3444332 23444778888888 88999
Q ss_pred CeEEEeeCCCCCccccCCccc--ccccceEEEEEcCCCCEEEEEecCcEEEEeC
Q 010256 463 GVVRRVKGADNSALDANGNAF--DFSMKLLHLAWHPSENSIACAASNSLYMYYA 514 (514)
Q Consensus 463 ~~v~i~~~~~~~~~~~~~~~~--~~~~~v~~~~~spd~~~l~~~~~~~~~i~~~ 514 (514)
+.|++++-... ....... .+...+..++|+|++++|++++++.+.+|..
T Consensus 330 ~~i~iwd~~~~---~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~ 380 (383)
T 3ei3_B 330 RTIDIYDANSG---GLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNR 380 (383)
T ss_dssp CCEEEEETTTC---CEEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEEC
T ss_pred CeEEEEecCCC---ceeeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEec
Confidence 99999432211 1111111 2467778889999999999999999999963
No 78
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.7e-34 Score=292.19 Aligned_cols=288 Identities=16% Similarity=0.214 Sum_probs=221.6
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCcc-----EEEEEeeccCCCccccCCcc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-----KVKKVFDWNVHPEKAAGNGP 166 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~~ 166 (514)
....+++|. +.|++++|+|. ++.+|++|+.|++|++|++... ........+ ...
T Consensus 374 ~~~~l~~H~------------~~V~~v~~~~~-~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h--------~~~ 432 (694)
T 3dm0_A 374 LKGTMRAHT------------DMVTAIATPID-NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH--------SHF 432 (694)
T ss_dssp EEEEEECCS------------SCEEEEECCTT-CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECC--------SSC
T ss_pred hhhhcccCC------------ceeEEEEecCC-CCCEEEEEeCCCcEEEEEccCCCcccccccceecCC--------CCc
Confidence 334577887 99999999642 3469999999999999998753 222222322 234
Q ss_pred eecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCC
Q 010256 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 246 (514)
Q Consensus 167 v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 246 (514)
|. .++|+|+++.+ ++++.|+.|++|| +.. ..+.+. +.+|...|.+++|+|+++
T Consensus 433 v~-------~v~~s~~g~~l------------~sgs~Dg~v~vwd-~~~------~~~~~~-~~~h~~~v~~~~~s~~~~ 485 (694)
T 3dm0_A 433 VE-------DVVLSSDGQFA------------LSGSWDGELRLWD-LAA------GVSTRR-FVGHTKDVLSVAFSLDNR 485 (694)
T ss_dssp EE-------EEEECTTSSEE------------EEEETTSEEEEEE-TTT------TEEEEE-EECCSSCEEEEEECTTSS
T ss_pred EE-------EEEECCCCCEE------------EEEeCCCcEEEEE-CCC------CcceeE-EeCCCCCEEEEEEeCCCC
Confidence 44 78999999998 9999999999999 332 222233 378999999999999999
Q ss_pred EEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCC-CcEEEEEecCCeEEEEEcCCCccccccccc
Q 010256 247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH-CNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (514)
Q Consensus 247 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 324 (514)
+|+++ .|++|++||.... ....+. ....+|...|.+++|+|++ ...|++++.|+.|++||+++++..
T Consensus 486 ~l~s~s~D~~i~iwd~~~~-~~~~~~----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~------ 554 (694)
T 3dm0_A 486 QIVSASRDRTIKLWNTLGE-CKYTIS----EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR------ 554 (694)
T ss_dssp CEEEEETTSCEEEECTTSC-EEEEEC----SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE------
T ss_pred EEEEEeCCCEEEEEECCCC-cceeec----cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE------
Confidence 99999 9999999998633 222211 1335688999999999986 258999999999999999886642
Q ss_pred eeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceee
Q 010256 325 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
..+.+|.+.|++++|+|++++|++|+ |+.|++||+.+ ++.+..+..+.. +.+
T Consensus 555 ----------~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~-~~~~~~~~~~~~----------------v~~ 607 (694)
T 3dm0_A 555 ----------STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE-GKKLYSLEANSV----------------IHA 607 (694)
T ss_dssp ----------EEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT-TEEEECCBCSSC----------------EEE
T ss_pred ----------EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CceEEEecCCCc----------------EEE
Confidence 23556778999999999999999986 49999999987 666665543321 348
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC-------------------CcceeEEEECCCCCceeecCCCCe
Q 010256 404 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-------------------KNPMRRQVQTPSRPSRPLGSLSGV 464 (514)
Q Consensus 404 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~l~s~s~d~~ 464 (514)
++|+|++.+|++++ |+.|++||+.++... ..+..+ ...+.+++|+|++++|++|+.||.
T Consensus 608 ~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 608 LCFSPNRYWLCAAT-EHGIKIWDLESKSIV-EDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEE-EEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEcCCCcEEEEEc-CCCEEEEECCCCCCh-hhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 99999999888765 566999999987433 333321 123678999999999999999999
Q ss_pred EEE
Q 010256 465 VRR 467 (514)
Q Consensus 465 v~i 467 (514)
|++
T Consensus 686 i~i 688 (694)
T 3dm0_A 686 IRV 688 (694)
T ss_dssp EEE
T ss_pred EEE
Confidence 999
No 79
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8e-34 Score=257.64 Aligned_cols=241 Identities=17% Similarity=0.188 Sum_probs=191.8
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|++++| +++|++|++++.|++|++||+..+...
T Consensus 10 ~~V~~~~~--s~~g~~las~s~D~~v~iw~~~~~~~~------------------------------------------- 44 (297)
T 2pm7_B 10 EMIHDAVM--DYYGKRMATCSSDKTIKIFEVEGETHK------------------------------------------- 44 (297)
T ss_dssp SCEEEEEE--CTTSSEEEEEETTSCEEEEEBCSSCBC-------------------------------------------
T ss_pred CceEEEEE--CCCCCEEEEEeCCCEEEEEecCCCCcE-------------------------------------------
Confidence 88999999 678889999999999999998643100
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCCCceee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+... +.+|.+.|.+++|+++ +++|++| .|++|++||+++++....
T Consensus 45 -------------------------------~~~~-l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~ 92 (297)
T 2pm7_B 45 -------------------------------LIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI 92 (297)
T ss_dssp -------------------------------CCEE-ECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC
T ss_pred -------------------------------EEEE-EccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE
Confidence 0011 3689999999999864 8999999 999999999986532111
Q ss_pred eeccCCCcccccCCceEEEEEecC--CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
..+..|...|.+++|+|+ + .+|++++.|+.|++||++++.... ...+.+|...|.++
T Consensus 93 ------~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~--------------~~~~~~h~~~v~~~ 151 (297)
T 2pm7_B 93 ------AVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTS--------------PIIIDAHAIGVNSA 151 (297)
T ss_dssp ------EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBC--------------CEEEECCSSCEEEE
T ss_pred ------EEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCcee--------------eeeeecccCccceE
Confidence 135678899999999997 6 799999999999999998753210 12245677899999
Q ss_pred EEecC-------------CCEEEEEe-CCeEEEEEccCCCC----ceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 348 KFARN-------------GRHILSRD-YMTLKLWDINMDSG----PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 348 ~~s~~-------------g~~l~~~~-~~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
+|+|+ +++|++|+ |++|++||++. +. ....+.+|... |.+++|+|+
T Consensus 152 ~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~-~~~~~~~~~~l~~H~~~---------------V~~v~~sp~ 215 (297)
T 2pm7_B 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-DAQTYVLESTLEGHSDW---------------VRDVAWSPT 215 (297)
T ss_dssp EECCCC------------CCEEEEEETTSCEEEEEEET-TTTEEEEEEEECCCSSC---------------EEEEEECCC
T ss_pred eecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC-CCceEEEEEEecCCCCc---------------eEEEEECCC
Confidence 99997 57899876 59999999986 44 44566677654 449999999
Q ss_pred C---CEEEEEeCCCcEEEEecCCCce--eeeee--cCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 410 G---GRVATGSYSNLFRVFGCSEGSA--ESTTL--EASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 410 ~---~~l~s~~~dg~i~iwd~~~~~~--~~~~~--~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+ ++|++++.|+.|+|||+.+... ....+ ..|...+.+++|+|++++||+++.|+.|++
T Consensus 216 ~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~l 280 (297)
T 2pm7_B 216 VLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280 (297)
T ss_dssp CSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEE
T ss_pred CCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence 5 8999999999999999986431 11233 577889999999999999999999999999
No 80
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.8e-35 Score=273.29 Aligned_cols=295 Identities=11% Similarity=0.051 Sum_probs=203.4
Q ss_pred cceeEEEEeeCCCCcEEEEeeCC-------CeEEEEEcCccEE------EEE--eeccCCCccccCCcceecccccCCce
Q 010256 113 EKINKIRWCQSANSALYLLSTND-------KTIKLWKVQEKKV------KKV--FDWNVHPEKAAGNGPIFGSHVSAIPK 177 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d-------~~i~iw~~~~~~~------~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (514)
-+|++++|+ +++++|++|+.+ +.|++|++..+.. ... ..+..+. .. ..
T Consensus 15 ~PV~sv~fs--~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~------~~---------v~ 77 (365)
T 4h5i_A 15 YPAYGAKFL--NNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDND------DS---------PT 77 (365)
T ss_dssp SCEEEEEEE--ETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTS------CC---------CC
T ss_pred CCEEEEEEe--CCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCC------Cc---------eE
Confidence 579999995 577899998653 3699999875421 111 1121111 11 22
Q ss_pred eeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccc-cccccc-cccccCccCeEEEEECCCCCEEEE--e-c
Q 010256 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNL-VAGCRR-IYAHAHDYHINSISNNSDGETFIS--A-D 252 (514)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~-~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s--~-~ 252 (514)
++++++..+. .........++.++.++.+++|+ +...+... ...... .....+...+.+++|+|||+++++ + .
T Consensus 78 s~~~~~~~~~-~g~~~~~~~l~s~~~d~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~ 155 (365)
T 4h5i_A 78 AIDASKGIIL-VGCNENSTKITQGKGNKHLRKFK-YDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKV 155 (365)
T ss_dssp EEEEETTEEE-EECCCCHHHHHHTSCCCCEEEEE-EETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCS
T ss_pred EEEeCCCEEE-EEECCCccEEEEecCCCcEEEEE-ecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCC
Confidence 3444444331 11112223447788899999999 43322211 111111 111345567899999999999764 4 6
Q ss_pred CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCC
Q 010256 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (514)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 332 (514)
|++|++||+++.+.... + .|...|.+++|+|+| +++++++.+ .+++|+..++.....
T Consensus 156 d~~i~iwd~~~~~~~~~--------~-~~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~~------------ 212 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFE--------I-ETRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSCIAR------------ 212 (365)
T ss_dssp SCEEEEEETTTTEEEEE--------E-ECSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCEEEE------------
T ss_pred CCEEEEeECCCCcEEEE--------e-CCCCceEEEEEccCC-ceEEeccce-eEEEEEeccCcceee------------
Confidence 89999999997665432 2 367789999999999 899988855 566677666554211
Q ss_pred ccceeeccccceeEEEEecCCCEEEEEe-CC----eEEEEEccCCCCc----eeeeeeccccccccccccccCCccceee
Q 010256 333 TRSFFTEIIASISDIKFARNGRHILSRD-YM----TLKLWDINMDSGP----VATFQVHEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 333 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~----~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
....+|...|.+++|+|+++++++++ ++ .+++|++.. ... ...+..|... |++
T Consensus 213 --~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~---------------V~~ 274 (365)
T 4h5i_A 213 --KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKS-GNTSVLRSKQVTNRFKG---------------ITS 274 (365)
T ss_dssp --ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET-TEEEEEEEEEEESSCSC---------------EEE
T ss_pred --eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccc-ceecceeeeeecCCCCC---------------eEe
Confidence 11334667899999999999999864 33 678888875 321 1233334332 559
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 404 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 404 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
++|+|||++||+|+.|+.|+|||+.+++.+...+++|..+|++++|+||+++|||+|.|++|||
T Consensus 275 ~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrv 338 (365)
T 4h5i_A 275 MDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHI 338 (365)
T ss_dssp EEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred EEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 9999999999999999999999999986554557899999999999999999999999999999
No 81
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.6e-33 Score=265.08 Aligned_cols=288 Identities=10% Similarity=0.136 Sum_probs=222.2
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|.+++| ++++++|++++.|+.|++||+.+++......
T Consensus 9 ~~i~~~~~--s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~--------------------------------------- 47 (372)
T 1k8k_C 9 EPISCHAW--NKDRTQIAICPNNHEVHIYEKSGNKWVQVHE--------------------------------------- 47 (372)
T ss_dssp SCCCEEEE--CTTSSEEEEECSSSEEEEEEEETTEEEEEEE---------------------------------------
T ss_pred CCeEEEEE--CCCCCEEEEEeCCCEEEEEeCCCCcEEeeee---------------------------------------
Confidence 88999999 5678899999999999999998765221111
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+.+|...|.+++|+|++++|+++ .|+.|++||+++.+.....
T Consensus 48 ------------------------------------~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~- 90 (372)
T 1k8k_C 48 ------------------------------------LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL- 90 (372)
T ss_dssp ------------------------------------EECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE-
T ss_pred ------------------------------------ecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeE-
Confidence 24677899999999999999999 9999999999865433221
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.+..|...|.+++|+|++ ++|++++.|+.|++||++.+..... .. ....+|...|.+++|+|
T Consensus 91 -----~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~-~~-----------~~~~~~~~~i~~~~~~~ 152 (372)
T 1k8k_C 91 -----VILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWV-CK-----------HIKKPIRSTVLSLDWHP 152 (372)
T ss_dssp -----ECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEE-EE-----------EECTTCCSCEEEEEECT
T ss_pred -----EeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCccee-ee-----------eeecccCCCeeEEEEcC
Confidence 345688899999999998 8999999999999999987653110 01 11234567899999999
Q ss_pred CCCEEEEEeC-CeEEEEEccC-----------------CCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEE
Q 010256 352 NGRHILSRDY-MTLKLWDINM-----------------DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (514)
Q Consensus 352 ~g~~l~~~~~-~~i~iwd~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (514)
++++|++++. +.|++||+.. .++.+..+..|... +.+++|+|++++|
T Consensus 153 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~l 217 (372)
T 1k8k_C 153 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW---------------VHGVCFSANGSRV 217 (372)
T ss_dssp TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC---------------EEEEEECSSSSEE
T ss_pred CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe---------------EEEEEECCCCCEE
Confidence 9999999864 9999999642 14455555555433 4599999999999
Q ss_pred EEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCC------C--------------
Q 010256 414 ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD------N-------------- 473 (514)
Q Consensus 414 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~------~-------------- 473 (514)
++++.||.|++||+.+++ ....+..|..++..++|+|++++++++ .|+.+++++... .
T Consensus 218 ~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 218 AWVSHDSTVCLADADKKM-AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp EEEETTTEEEEEEGGGTT-EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred EEEeCCCEEEEEECCCCc-eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 999999999999999875 447888999999999999999999988 899999932221 0
Q ss_pred -----------CccccC------Ccc-cccccceEEEEEc-CCC---CEEEEEe-cCcEEEEe
Q 010256 474 -----------SALDAN------GNA-FDFSMKLLHLAWH-PSE---NSIACAA-SNSLYMYY 513 (514)
Q Consensus 474 -----------~~~~~~------~~~-~~~~~~v~~~~~s-pd~---~~l~~~~-~~~~~i~~ 513 (514)
...... ... ..|...|++++|+ +++ ++|++++ ++.+++|.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred cchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 000000 112 2689999999977 666 8999888 66678885
No 82
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.7e-33 Score=268.06 Aligned_cols=282 Identities=14% Similarity=0.172 Sum_probs=217.7
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
..+....|+|++++||+|+.||.|++||+.+++ ....+.+|. ..|
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------~~~~~~~h~------------~~v 142 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-----------------------QREIDQAHV------------SEI 142 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-----------------------EEEETTSSS------------SCE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-----------------------eeeeccccc------------Ccc
Confidence 556666889999999999999999999987655 335567887 889
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
++++| ++++.+|++++.|+.|++||+.+++...
T Consensus 143 ~~~~~--~~~~~~l~s~s~d~~i~iwd~~~~~~~~--------------------------------------------- 175 (420)
T 3vl1_A 143 TKLKF--FPSGEALISSSQDMQLKIWSVKDGSNPR--------------------------------------------- 175 (420)
T ss_dssp EEEEE--CTTSSEEEEEETTSEEEEEETTTCCCCE---------------------------------------------
T ss_pred EEEEE--CCCCCEEEEEeCCCeEEEEeCCCCcCce---------------------------------------------
Confidence 99999 5577899999999999999998654211
Q ss_pred CcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccC
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~ 274 (514)
. +.+|...|.+++|+|++++|+++ .|++|++||+++++....+.
T Consensus 176 -------------------------------~-~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--- 220 (420)
T 3vl1_A 176 -------------------------------T-LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN--- 220 (420)
T ss_dssp -------------------------------E-EECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC---
T ss_pred -------------------------------E-EcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEee---
Confidence 0 25688899999999999999999 99999999998665443321
Q ss_pred CCcccccCCc---------------------eEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCc
Q 010256 275 PANMEDLTEV---------------------ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (514)
Q Consensus 275 ~~~~~~~~~~---------------------i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 333 (514)
....+... +.+++|+|++ ++|++|+.||.|++||+++++... .+
T Consensus 221 --~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~----~~-------- 285 (420)
T 3vl1_A 221 --RKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTI----QL-------- 285 (420)
T ss_dssp --BTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEE----EE--------
T ss_pred --cCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeE----Ec--------
Confidence 11123344 4445557888 899999999999999999876531 11
Q ss_pred cceeeccccceeEEEEecCCC-EEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC
Q 010256 334 RSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (514)
Q Consensus 334 ~~~~~~~~~~i~~~~~s~~g~-~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 411 (514)
...|...|.+++|+|+++ +|++|+. +.|++||+++...++..+..|.... +.++ +.++++
T Consensus 286 ---~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------v~~~-~~~~~~ 347 (420)
T 3vl1_A 286 ---PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP--------------INNV-YFAAGA 347 (420)
T ss_dssp ---CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC--------------EEEE-EEETTE
T ss_pred ---ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC--------------ceEE-EeCCCC
Confidence 234567899999999999 8888765 9999999997445577777743321 2355 456889
Q ss_pred EEEEEeCCCcEEEEecCCCce--------eeeeecCCCcceeEEEECCCCC---ceeecCCCCeEEE
Q 010256 412 RVATGSYSNLFRVFGCSEGSA--------ESTTLEASKNPMRRQVQTPSRP---SRPLGSLSGVVRR 467 (514)
Q Consensus 412 ~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~---~l~s~s~d~~v~i 467 (514)
+|++++.||.|++|++..... ....+..|...+..++|+|+++ .+++.+.+|.+.+
T Consensus 348 ~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~ 414 (420)
T 3vl1_A 348 LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCAL 414 (420)
T ss_dssp EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEE
T ss_pred EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEE
Confidence 999999999999999876322 1235667889999999999999 6666667788877
No 83
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.6e-34 Score=264.63 Aligned_cols=243 Identities=13% Similarity=0.159 Sum_probs=192.5
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|++++| +++|++|++++.|++|++||+.+++.....
T Consensus 14 ~~V~~v~~--s~~g~~lasgs~D~~v~lwd~~~~~~~~~~---------------------------------------- 51 (316)
T 3bg1_A 14 DMIHDAQM--DYYGTRLATCSSDRSVKIFDVRNGGQILIA---------------------------------------- 51 (316)
T ss_dssp CCEEEEEE--CGGGCEEEEEETTTEEEEEEEETTEEEEEE----------------------------------------
T ss_pred CeEEEeeE--cCCCCEEEEEeCCCeEEEEEecCCCcEEEE----------------------------------------
Confidence 88999999 567889999999999999999765421110
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC--CCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
. +.+|...|.+++|++ ++++|++| .|++|++||++++.....
T Consensus 52 ----------------------------------~-l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~ 96 (316)
T 3bg1_A 52 ----------------------------------D-LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKS 96 (316)
T ss_dssp ----------------------------------E-EECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEE
T ss_pred ----------------------------------E-EcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEE
Confidence 0 267889999999986 48899999 999999999986532111
Q ss_pred eeccCCCcccccCCceEEEEEecC--CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
..+.+|...|.+++|+|+ + .+|++|+.|+.|++||++.+.... . ...+.+|...+.++
T Consensus 97 ------~~~~~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~~-------~------~~~~~~h~~~v~~~ 156 (316)
T 3bg1_A 97 ------HEHAGHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQWE-------V------KKINNAHTIGCNAV 156 (316)
T ss_dssp ------EEECCCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCEE-------E------CCBTTSSSSCBCCC
T ss_pred ------EEccCCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCcc-------e------eeeeccccCCcceE
Confidence 145678999999999998 5 799999999999999998753210 0 11234566789999
Q ss_pred EEecC-----------------CCEEEEEe-CCeEEEEEccCCC--CceeeeeeccccccccccccccCCccceeeEEEc
Q 010256 348 KFARN-----------------GRHILSRD-YMTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (514)
Q Consensus 348 ~~s~~-----------------g~~l~~~~-~~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (514)
+|+|+ +++|++|+ |++|++||++... +++..+.+|... |.+++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~---------------V~~v~~s 221 (316)
T 3bg1_A 157 SWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW---------------VRDVAWA 221 (316)
T ss_dssp EECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSC---------------EEEEECC
T ss_pred EEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCc---------------eEEEEec
Confidence 99997 46888876 5999999997522 345666677654 4499999
Q ss_pred CCC----CEEEEEeCCCcEEEEecCCC---ceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 408 GDG----GRVATGSYSNLFRVFGCSEG---SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 408 ~~~----~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|++ ++|++++.|+.|++|++.+. ......+..|...|.+++|+|++++|++++.|++|++
T Consensus 222 p~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~l 288 (316)
T 3bg1_A 222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTL 288 (316)
T ss_dssp CCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEE
T ss_pred CCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEE
Confidence 987 89999999999999999763 2223456788999999999999999999999999999
No 84
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.1e-33 Score=268.68 Aligned_cols=305 Identities=10% Similarity=0.105 Sum_probs=226.0
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
....+.+|. +.|++++|+| .+|++++.||.|++|++.+++....
T Consensus 8 ~~~~~~~h~------------~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~-------------------- 51 (397)
T 1sq9_A 8 TANAGKAHD------------ADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENP-------------------- 51 (397)
T ss_dssp EEEESSCSS------------SCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCG--------------------
T ss_pred hhhhhhhhh------------cCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccC--------------------
Confidence 445677888 8999999954 5999999999999999976531000
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC----C--
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD----G-- 245 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~-- 245 (514)
...... +.+|...|.+++|+|+ +
T Consensus 52 --------------------------------------------------~~~~~~-~~~h~~~v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 52 --------------------------------------------------KDKSYS-HFVHKSGLHHVDVLQAIERDAFE 80 (397)
T ss_dssp --------------------------------------------------GGGEEE-EECCTTCEEEEEEEEEEETTTEE
T ss_pred --------------------------------------------------CCcceE-EecCCCcEEEEEEecccccCCcc
Confidence 000111 2578899999999999 9
Q ss_pred -CEEEEe-cCCeEEEEeccCCCceeeeeccCCCccccc-----CCceEEEEEe----cCCCcE-EEEEecCCeEEEEEcC
Q 010256 246 -ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL-----TEVITSAEFH----PTHCNM-LAYSSSKGSIRLIDMR 313 (514)
Q Consensus 246 -~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~~~i~~v~~~----p~~~~~-l~~~~~dg~i~~wd~~ 313 (514)
++|+++ .|+.|++||+.+.+...... ...+..| ...|.+++|+ |++ .+ |++++.||.|++||++
T Consensus 81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 81 LCLVATTSFSGDLLFYRITREDETKKVI---FEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEE---EEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEE
T ss_pred ccEEEEEcCCCCEEEEEccCCccccccc---ceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCC
Confidence 999998 89999999998765410000 0134455 5899999999 998 78 9999999999999998
Q ss_pred C------Ccccc-ccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeee---c
Q 010256 314 Q------SALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV---H 382 (514)
Q Consensus 314 ~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~---~ 382 (514)
+ ++... .....+... ......|...|.+++|+|++ ++++++. +.|++||++. ++++..+.. |
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~h 229 (397)
T 1sq9_A 157 PFADESNSLTLNWSPTLELQGT-----VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LRPLYNFESQHSM 229 (397)
T ss_dssp SSSSHHHHTTTCCCCEEEEEEE-----ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TEEEEEEECCC--
T ss_pred ccccccccceeeccCcceeeee-----eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC-CceeEEEeccccc
Confidence 8 44321 000022110 00002366789999999999 8888865 9999999997 778888877 5
Q ss_pred ---cccccccccccccCCccceeeEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecC-------------CCcc
Q 010256 383 ---EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEA-------------SKNP 443 (514)
Q Consensus 383 ---~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~-------------~~~~ 443 (514)
... +.+++|+|++++|++++.| |.|++||+.+++ ....+.+ |...
T Consensus 230 ~~~~~~---------------i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 293 (397)
T 1sq9_A 230 INNSNS---------------IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQASLGEFAHSSW 293 (397)
T ss_dssp -CCCCC---------------EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-EEEEECBC--------CCBSBSSC
T ss_pred cccCCc---------------cceEEECCCCCEEEEEecCCCCceEEEEECCCCc-ccceeccCcccccccccccccCCc
Confidence 433 4499999999999999999 999999999874 4467777 9999
Q ss_pred eeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccc------cc---------------ccceEEEEEcCCC----
Q 010256 444 MRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF------DF---------------SMKLLHLAWHPSE---- 498 (514)
Q Consensus 444 v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~------~~---------------~~~v~~~~~spd~---- 498 (514)
|.+++|+|++++|++++.|+.|++++-... +...... .| ...|++++|+|++
T Consensus 294 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~ 370 (397)
T 1sq9_A 294 VMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSG 370 (397)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBS
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccc
Confidence 999999999999999999999999332211 1111111 34 8899999999998
Q ss_pred ------CEEEEEe-cCcEEEEe
Q 010256 499 ------NSIACAA-SNSLYMYY 513 (514)
Q Consensus 499 ------~~l~~~~-~~~~~i~~ 513 (514)
++|++++ ++.+.+|.
T Consensus 371 ~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 371 MGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp TTCTTSCEEEEEETTTEEEEEE
T ss_pred ccccccceEEEecCCCcEEEEE
Confidence 7888887 66778885
No 85
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6e-34 Score=267.25 Aligned_cols=301 Identities=12% Similarity=0.123 Sum_probs=218.6
Q ss_pred cceeEEEEeeC--CCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 113 EKINKIRWCQS--ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 113 ~~v~~i~~~~~--~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|++++|+|. .....+++++.++.|++||+.+++........
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~----------------------------------- 63 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSY----------------------------------- 63 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEE-----------------------------------
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeec-----------------------------------
Confidence 89999999763 12346777777789999999876532221111
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC----CCEEEEe-cCCeEEEEeccCCC
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD----GETFISA-DDLRINLWNLEISN 265 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~-~d~~i~iwd~~~~~ 265 (514)
....|...|.+++|+|+ +++|++| .|+.|++||+++.+
T Consensus 64 -------------------------------------~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~ 106 (366)
T 3k26_A 64 -------------------------------------VDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ 106 (366)
T ss_dssp -------------------------------------ECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC
T ss_pred -------------------------------------cccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce
Confidence 01246688999999999 6689998 99999999998665
Q ss_pred ceeeeeccCCCcccccCCceEEEEEec-CCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 266 QSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
... .+.+|...|.+++|+| ++ .+|++++.||.|++||+++++.. ..+.. +.+|...|
T Consensus 107 ~~~--------~~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~---------~~~~~~~v 164 (366)
T 3k26_A 107 CIK--------HYVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDTLV----AIFGG---------VEGHRDEV 164 (366)
T ss_dssp EEE--------EEESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTEEE----EEECS---------TTSCSSCE
T ss_pred Eee--------eecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCeEE----EEecc---------cccccCce
Confidence 443 4567899999999999 66 89999999999999999987652 22210 14566899
Q ss_pred eEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccc---------------c-ccccccCCccceeeEEEc
Q 010256 345 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPK---------------L-CDLYENDSIFDKFECCLS 407 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~~~v~~~~~s 407 (514)
.+++|+|++++|++++. +.|++||++. ++.+..+..+...... . ....+.. .|.+++|+
T Consensus 165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~ 240 (366)
T 3k26_A 165 LSADYDLLGEKIMSCGMDHSLKLWRINS-KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN---YVDCVRWL 240 (366)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEESCS-HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS---CCCEEEEE
T ss_pred eEEEECCCCCEEEEecCCCCEEEEECCC-CccccccceeEEecCCCCcccccceeeccCccccccCCcc---eEEEEEEc
Confidence 99999999999999864 9999999986 4443333220000000 0 0000111 24489998
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCce-------------eeeeecCCCcceeEEEECCC--CCceeecCCCCeEEEeeCCC
Q 010256 408 GDGGRVATGSYSNLFRVFGCSEGSA-------------ESTTLEASKNPMRRQVQTPS--RPSRPLGSLSGVVRRVKGAD 472 (514)
Q Consensus 408 ~~~~~l~s~~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~v~~~~~~~~--~~~l~s~s~d~~v~i~~~~~ 472 (514)
+++|++++.||.|++||+.++.. ....+..|...+..++|+|+ +++|++++.||.|++++-..
T Consensus 241 --~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 241 --GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV 318 (366)
T ss_dssp --TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred --CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence 78999999999999999987643 24677889999999999999 99999999999999933222
Q ss_pred CCccc-cCCccccc--ccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 473 NSALD-ANGNAFDF--SMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 473 ~~~~~-~~~~~~~~--~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
..... .......| ...|++++|+|++++|++++ ++.+++|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 319 EDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp SSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 11000 11122234 78999999999999999888 55788886
No 86
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-34 Score=275.53 Aligned_cols=323 Identities=10% Similarity=0.142 Sum_probs=228.1
Q ss_pred EEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeee-ccCCCccccccccccccceeEEEE
Q 010256 42 EFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKSLEIEEKINKIRW 120 (514)
Q Consensus 42 ~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~v~~i~~ 120 (514)
.|+|+++.+++++ .|+. ..+.+..+ .+|. +.|++++|
T Consensus 34 ~f~~~~~~~~~~~------~w~~------------------------~g~~~~~~~~~h~------------~~V~~~~~ 71 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNL------------------------RGKLIATLMENEP------------NSITSSAV 71 (437)
T ss_dssp GGCCCCCCCCCCC------GGGC------------------------CCCEEEEECTTTT------------SCEEEEEE
T ss_pred hcCCccccccccc------cccc------------------------cceEEeeeccCCC------------CceEEEEE
Confidence 4788888888765 3652 22355667 8887 88999999
Q ss_pred eeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccC
Q 010256 121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFP 200 (514)
Q Consensus 121 ~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 200 (514)
+|. ++.+|++++.||+|++||+.+.+....
T Consensus 72 s~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~------------------------------------------------- 101 (437)
T 3gre_A 72 SPG-ETPYLITGSDQGVIKIWNLKEIIVGEV------------------------------------------------- 101 (437)
T ss_dssp ECS-SSCEEEEEETTSEEEEEEHHHHHTTCC-------------------------------------------------
T ss_pred CCC-CCCEEEEecCCceEEEeECcccccCcc-------------------------------------------------
Confidence 541 667999999999999999875210000
Q ss_pred CCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEecc---CCCceeeeecc---
Q 010256 201 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLE---ISNQSFNIVDV--- 273 (514)
Q Consensus 201 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~---~~~~~~~~~~~--- 273 (514)
..+.. ...|...|.+++|+|++++|+++ .|++|++||++ .++.. .....
T Consensus 102 ---------------------~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~~i 157 (437)
T 3gre_A 102 ---------------------YSSSL--TYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV-KFLNCECI 157 (437)
T ss_dssp ---------------------CSCSE--EEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEE-EEEEEEEE
T ss_pred ---------------------cceee--eccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCcee-ecccccee
Confidence 00000 13588999999999999999999 99999999995 23221 11100
Q ss_pred CCCcccc--cCCceEEEE--EecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 274 KPANMED--LTEVITSAE--FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 274 ~~~~~~~--~~~~i~~v~--~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
....+.. +...+.++. ++|++ .+|++|+.|+.|++||+++++.. ..+..+ .|...|++++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~----------~h~~~v~~~~~ 222 (437)
T 3gre_A 158 RKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERL----QIIENS----------PRHGAVSSICI 222 (437)
T ss_dssp EEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEE----EEEECC----------GGGCCEEEEEE
T ss_pred EEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeee----EEEccC----------CCCCceEEEEE
Confidence 0001122 566777777 55787 89999999999999999987652 222221 16689999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCceeeee-eccccccccccccccCCccceeeEEE----cCCCCEEEEEeCCCcEE
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCL----SGDGGRVATGSYSNLFR 423 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~----s~~~~~l~s~~~dg~i~ 423 (514)
+|++++|++|+. +.|++||++. ++++..+. .|... |.+++| ++++++|++|+.||.|+
T Consensus 223 s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~---------------v~~~~~~~~~s~~~~~l~s~~~dg~i~ 286 (437)
T 3gre_A 223 DEECCVLILGTTRGIIDIWDIRF-NVLIRSWSFGDHAP---------------ITHVEVCQFYGKNSVIVVGGSSKTFLT 286 (437)
T ss_dssp CTTSCEEEEEETTSCEEEEETTT-TEEEEEEBCTTCEE---------------EEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEEcCC-ccEEEEEecCCCCc---------------eEEEEeccccCCCccEEEEEcCCCcEE
Confidence 999999999865 9999999997 77777765 33322 347744 45788999999999999
Q ss_pred EEecCCCceeeeeecC--------------------------CCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCcc-
Q 010256 424 VFGCSEGSAESTTLEA--------------------------SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL- 476 (514)
Q Consensus 424 iwd~~~~~~~~~~~~~--------------------------~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~- 476 (514)
+||+.+++.. ..+.+ |...|.+++|+ ++++|++++.|+.|++++-......
T Consensus 287 iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 287 IWNFVKGHCQ-YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp EEETTTTEEE-EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred EEEcCCCcEE-EEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence 9999987543 33332 66778889999 7799999999999999322111100
Q ss_pred ccC---------------------------------CcccccccceEEEEEcCC--CCEEEEEe-cCcEEEEe
Q 010256 477 DAN---------------------------------GNAFDFSMKLLHLAWHPS--ENSIACAA-SNSLYMYY 513 (514)
Q Consensus 477 ~~~---------------------------------~~~~~~~~~v~~~~~spd--~~~l~~~~-~~~~~i~~ 513 (514)
.+. .....|...|++++|+++ +.+|++++ ++.+.||+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 365 AVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 000 001128899999999999 77899888 56677774
No 87
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1e-32 Score=267.52 Aligned_cols=325 Identities=12% Similarity=0.168 Sum_probs=242.0
Q ss_pred eeeeccCCCccccccccccccc-eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 93 KTEFQSHEPEFDYLKSLEIEEK-INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~-v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
...+.+|. .. +.++.+ . +.++++++.||.|++||+.+++.......+ .+.|.
T Consensus 114 ~~~l~~h~------------~~v~~~~~~--~--~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h--------~~~V~--- 166 (464)
T 3v7d_B 114 RTTLRGHM------------TSVITCLQF--E--DNYVITGADDKMIRVYDSINKKFLLQLSGH--------DGGVW--- 166 (464)
T ss_dssp EEEEECCS------------SSCEEEEEE--E--TTEEEEEETTSCEEEEETTTTEEEEEECCC--------SSCEE---
T ss_pred eEEEcCCC------------CCcEEEEEE--C--CCEEEEEcCCCcEEEEECCCCcEEEEEeCC--------CcCEE---
Confidence 35677887 55 566666 3 459999999999999999999877666544 34555
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEEC--CCCCEEE
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN--SDGETFI 249 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~ 249 (514)
.++|++++ .+ ++++.|+.|++|| +.. ..+... +.+|...|.+++|+ +++++++
T Consensus 167 ----~l~~~~~~-~l------------~s~s~dg~i~vwd-~~~------~~~~~~-~~~h~~~v~~l~~~~~~~~~~l~ 221 (464)
T 3v7d_B 167 ----ALKYAHGG-IL------------VSGSTDRTVRVWD-IKK------GCCTHV-FEGHNSTVRCLDIVEYKNIKYIV 221 (464)
T ss_dssp ----EEEECSTT-EE------------EEEETTSCEEEEE-TTT------TEEEEE-ECCCSSCEEEEEEEESSSCEEEE
T ss_pred ----EEEEcCCC-EE------------EEEeCCCCEEEEE-CCC------CcEEEE-ECCCCCccEEEEEecCCCCCEEE
Confidence 78898888 66 9999999999999 332 223333 37899999999998 5788999
Q ss_pred Ee-cCCeEEEEeccCCCceeeeecc--------C-------CCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDV--------K-------PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~--------~-------~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
++ .|++|++||+++.......... . ...+.+|...+.++ ++++ +++++|+.|+.|++||++
T Consensus 222 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~ 298 (464)
T 3v7d_B 222 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVA 298 (464)
T ss_dssp EEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETT
T ss_pred EEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECC
Confidence 99 9999999999865432110000 0 01356677888777 5666 799999999999999999
Q ss_pred CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccc
Q 010256 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL 392 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 392 (514)
+++.. .. +.+|...|.+++|+|+++++++|+. +.|++||+++ ++++..+.+|...
T Consensus 299 ~~~~~----~~------------~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~------- 354 (464)
T 3v7d_B 299 QMKCL----YI------------LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTAL------- 354 (464)
T ss_dssp TTEEE----EE------------ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECCCSSC-------
T ss_pred CCcEE----EE------------ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCCc-------
Confidence 87652 22 4456688999999999999999865 9999999997 8888888888765
Q ss_pred cccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCC
Q 010256 393 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD 472 (514)
Q Consensus 393 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~ 472 (514)
|.+++|+ +++|++++.||.|++||+.++.... . ..+...+..++++++++++++++ |+.|++.+-..
T Consensus 355 --------v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 355 --------VGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF-S-YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp --------EEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE-E-EECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred --------EEEEEEc--CCEEEEEeCCCcEEEEECCCCceee-e-ecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCC
Confidence 3378886 6899999999999999999764432 2 24666778889999999999998 89999943221
Q ss_pred CCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEE
Q 010256 473 NSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 512 (514)
Q Consensus 473 ~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~ 512 (514)
.. .+......+...|.+++|+ +..+++++++++..+|
T Consensus 422 g~--~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i 458 (464)
T 3v7d_B 422 GK--LVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFL 458 (464)
T ss_dssp CC--EEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred Cc--EEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEE
Confidence 11 1111234578999999997 4444555566665544
No 88
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-34 Score=293.25 Aligned_cols=258 Identities=13% Similarity=0.196 Sum_probs=203.3
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|+|++|++|+.||.|+||++.++.. .....+.+|.
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~---------------------~~~~~l~~h~---------- 53 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHE---------- 53 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE---------------------EEEEEECCCS----------
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC---------------------ccceeccCCc----------
Confidence 348999999999999999999999999999999874332 2556788898
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++|+|..++.+|++++.||.|++||+.+++......
T Consensus 54 --~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~------------------------------------- 94 (753)
T 3jro_A 54 --GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV------------------------------------- 94 (753)
T ss_dssp --SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEE-------------------------------------
T ss_pred --CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccc-------------------------------------
Confidence 88999999765558899999999999999998765322111
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCCCce
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
..+|...|.+++|+|+ ++.+++| .||.|++||+++....
T Consensus 95 --------------------------------------~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~ 136 (753)
T 3jro_A 95 --------------------------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT 136 (753)
T ss_dssp --------------------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC
T ss_pred --------------------------------------ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc
Confidence 2567789999999999 9999999 9999999999866433
Q ss_pred eeeeccCCCcccccCCceEEEEEecC-------------CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCcc
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPT-------------HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~-------------~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 334 (514)
... .+.+|...|.+++|+|. + .++++|+.||.|++||++++.......
T Consensus 137 ~~~------~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~------------ 197 (753)
T 3jro_A 137 SPI------IIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLE------------ 197 (753)
T ss_dssp CCE------EEECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEE------------
T ss_pred cee------EeecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceee------------
Confidence 221 45678899999999994 6 899999999999999998864321111
Q ss_pred ceeeccccceeEEEEecC---CCEEEEEe-CCeEEEEEccCCCCc-----eeeeeeccccccccccccccCCccceeeEE
Q 010256 335 SFFTEIIASISDIKFARN---GRHILSRD-YMTLKLWDINMDSGP-----VATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (514)
Q Consensus 335 ~~~~~~~~~i~~~~~s~~---g~~l~~~~-~~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (514)
..+.+|...|.+++|+|+ ++++++++ ||.|++||+.. +.. +.....|.. .|++++
T Consensus 198 ~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~---------------~v~~l~ 261 (753)
T 3jro_A 198 STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN-EQGPWKKTLLKEEKFPD---------------VLWRAS 261 (753)
T ss_dssp EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS-SSSCCBCCBSSSSCCSS---------------CCCCEE
T ss_pred eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC-CCCcceeEEeccCCCCC---------------ceEEEE
Confidence 224567789999999999 89999976 49999999986 321 111112222 244899
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCc
Q 010256 406 LSGDGGRVATGSYSNLFRVFGCSEGS 431 (514)
Q Consensus 406 ~s~~~~~l~s~~~dg~i~iwd~~~~~ 431 (514)
|+|+|++|++++.||.|++|++..+.
T Consensus 262 ~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 262 WSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 99999999999999999999998643
No 89
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=258.12 Aligned_cols=293 Identities=15% Similarity=0.185 Sum_probs=221.4
Q ss_pred ccccccceEEEEEcCC---CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 31 EVQEVDIISAIEFDKS---GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~---g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
..+|.+.|++++|+|+ |++|++|+.||.|+||++.+.... ....+.+|.
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~---------------------~~~~~~~h~------- 86 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT---------------------IPKAQQMHT------- 86 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE---------------------EEEEEEECS-------
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce---------------------eEEEecccc-------
Confidence 4589999999999999 699999999999999999863321 335677887
Q ss_pred ccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
..|.+++| ++++.+|++++.||.|++||+.+++....
T Consensus 87 -----~~v~~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~------------------------------------ 123 (368)
T 3mmy_A 87 -----GPVLDVCW--SDDGSKVFTASCDKTAKMWDLSSNQAIQI------------------------------------ 123 (368)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE------------------------------------
T ss_pred -----CCEEEEEE--CcCCCEEEEEcCCCcEEEEEcCCCCceee------------------------------------
Confidence 88999999 55778999999999999999988763221
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEE--CCCCCEEEEe-cCCeEEEEeccCC
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISN--NSDGETFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~s~-~d~~i~iwd~~~~ 264 (514)
..|...|.+++| +|++++|+++ .|+.|++||+++.
T Consensus 124 ------------------------------------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 124 ------------------------------------------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp ------------------------------------------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS
T ss_pred ------------------------------------------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC
Confidence 346688999999 8999999999 8999999999876
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
+.... +.. ...+.++.+.+ ..+++++.++.+++|+++....... ... ..+...+
T Consensus 162 ~~~~~--------~~~-~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~---~~~-----------~~~~~~~ 215 (368)
T 3mmy_A 162 NPMMV--------LQL-PERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFR---RIE-----------SPLKHQH 215 (368)
T ss_dssp SCSEE--------EEC-SSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEE---ECC-----------CSCSSCE
T ss_pred cEEEE--------Eec-CCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhh---hcc-----------ccccCCC
Confidence 54432 222 34566777665 4688889999999999987643211 111 1122356
Q ss_pred eEEEEecCCCE----EEEEe-CCeEEEEEccCCC---CceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE
Q 010256 345 SDIKFARNGRH----ILSRD-YMTLKLWDINMDS---GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 416 (514)
Q Consensus 345 ~~~~~s~~g~~----l~~~~-~~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 416 (514)
..+.+.++... +++++ ++.|++||++. . ..+..+..|......... ......|.+++|+|++++|+++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~s~ 291 (368)
T 3mmy_A 216 RCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPAKDNFTFKCHRSNGTNTSA---PQDIYAVNGIAFHPVHGTLATV 291 (368)
T ss_dssp EEEEEEECTTSCEEEEEEEETTSEEEEEESSC-SCHHHHSEEEECSEEC----CC---CEEECCEEEEEECTTTCCEEEE
T ss_pred ceEEEcccCCCCCCeEEEecCCCcEEEEecCC-CCccccceeeeeeecccccccc---cccccceEEEEEecCCCEEEEE
Confidence 66777665554 77765 49999999986 4 445666666542110000 0011125599999999999999
Q ss_pred eCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 417 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 417 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+.||.|++||+.+++ ....+.+|..+|.+++|+|++++|++++.|+..+.
T Consensus 292 ~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~ 341 (368)
T 3mmy_A 292 GSDGRFSFWDKDART-KLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKG 341 (368)
T ss_dssp ETTSCEEEEETTTTE-EEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTC
T ss_pred ccCCeEEEEECCCCc-EEEEecCCCCCceEEEECCCCCeEEEEeccccccc
Confidence 999999999999874 45788899999999999999999999999886555
No 90
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=6.6e-33 Score=258.28 Aligned_cols=273 Identities=14% Similarity=0.184 Sum_probs=204.7
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|++++||+|+.||.|++|++.++.. ..+....+.+|.
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------------~~~~~~~~~~~~---------- 57 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-------------------NWELSDSWRAHD---------- 57 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-------------------CEEEEEEEECCS----------
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-------------------cceecceeccCC----------
Confidence 358999999999999999999999999999999986542 223556678888
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++|+|..++.+|++++.||.|++||+.+++.... +
T Consensus 58 --~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~-------------------------------~------- 97 (351)
T 3f3f_A 58 --SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS-------------------------------G------- 97 (351)
T ss_dssp --SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS-------------------------------S-------
T ss_pred --CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc-------------------------------c-------
Confidence 889999997643678999999999999999987531000 0
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCCCce
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
.. ...... +..|...|.+++|+|+ +++|+++ .|+.|++||+++.+..
T Consensus 98 --------------~~---------------~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 147 (351)
T 3f3f_A 98 --------------RR---------------WNKLCT-LNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDL 147 (351)
T ss_dssp --------------CS---------------EEEEEE-ECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCT
T ss_pred --------------cC---------------cceeee-ecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHh
Confidence 00 001111 2578899999999999 9999999 9999999999866543
Q ss_pred eeee-----ccCCCcccccCCceEEEEEecC---CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeec
Q 010256 268 FNIV-----DVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (514)
Q Consensus 268 ~~~~-----~~~~~~~~~~~~~i~~v~~~p~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (514)
..+. .........+...+.+++|+|+ + .++++++.++.+.+|+...+.... ...+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 212 (351)
T 3f3f_A 148 RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKLHV--------------AAKLPG 212 (351)
T ss_dssp TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCEEE--------------EEECCC
T ss_pred ccccccccccccccccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCceee--------------eeecCC
Confidence 2110 0011122357888999999997 6 899999999999888876654310 112455
Q ss_pred cccceeEEEEecCC----CEEEEEe-CCeEEEEEccCCC-----------------------------------------
Q 010256 340 IIASISDIKFARNG----RHILSRD-YMTLKLWDINMDS----------------------------------------- 373 (514)
Q Consensus 340 ~~~~i~~~~~s~~g----~~l~~~~-~~~i~iwd~~~~~----------------------------------------- 373 (514)
|...|.+++|+|++ ++|++++ |+.|++||++...
T Consensus 213 h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (351)
T 3f3f_A 213 HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQS 292 (351)
T ss_dssp CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CC
T ss_pred CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecc
Confidence 77899999999998 7888876 4999999998621
Q ss_pred ----CceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCce
Q 010256 374 ----GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (514)
Q Consensus 374 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 432 (514)
+.+..+.+|.. .|++++|+|++++|++++.||.|++|++.+++.
T Consensus 293 ~~~~~~~~~~~~h~~---------------~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 293 NLQVELLSEHDDHNG---------------EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp SEEEEEEEEECTTSS---------------CEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred cccccEEEEEecccc---------------cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 12222222222 356999999999999999999999999998744
No 91
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-34 Score=277.33 Aligned_cols=292 Identities=10% Similarity=0.074 Sum_probs=204.0
Q ss_pred ccccceEEEEEcCC------CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccc
Q 010256 33 QEVDIISAIEFDKS------GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (514)
Q Consensus 33 ~h~~~V~~~~~s~~------g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (514)
.|.+.|++++|+|+ +.+||+|+.||+|+|||+.+++..... .+ ........+.+|.
T Consensus 205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~--~~----------~~~~p~~~l~~h~------ 266 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV--FK----------MCEKPSLTLSLAD------ 266 (524)
T ss_dssp ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE--EE----------CCCSCSEEECCTT------
T ss_pred ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc--ce----------eecCceEEEEcCC------
Confidence 56789999999997 579999999999999999765421000 00 0001223567787
Q ss_pred cccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 107 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
..|++++|++ + ..|++|+.||+|++||+++++.
T Consensus 267 ------~~v~sv~~s~--~-~~lasgs~DgtV~lWD~~~~~~-------------------------------------- 299 (524)
T 2j04_B 267 ------SLITTFDFLS--P-TTVVCGFKNGFVAEFDLTDPEV-------------------------------------- 299 (524)
T ss_dssp ------TCEEEEEESS--S-SEEEEEETTSEEEEEETTBCSS--------------------------------------
T ss_pred ------CCEEEEEecC--C-CeEEEEeCCCEEEEEECCCCCC--------------------------------------
Confidence 8899999953 3 4899999999999999975420
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEE--EECCCC-CEEEEe-cCCeEEEEecc
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSI--SNNSDG-ETFISA-DDLRINLWNLE 262 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~-~~l~s~-~d~~i~iwd~~ 262 (514)
+ ...+.+|...|.++ +|+|++ ++|++| .|++|++||++
T Consensus 300 -------------------------------------~-~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~ 341 (524)
T 2j04_B 300 -------------------------------------P-SFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK 341 (524)
T ss_dssp -------------------------------------C-SEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGG
T ss_pred -------------------------------------c-eEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECC
Confidence 0 00026788999999 578887 899999 99999999998
Q ss_pred CCCceeeeeccCCCcccccC--CceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecc
Q 010256 263 ISNQSFNIVDVKPANMEDLT--EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (514)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~--~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (514)
+.+... .+.+|. ..|.+++|+|++ ..|++++.|+.|++||++++... . .+.+|
T Consensus 342 ~~~~~~--------~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~----~------------~l~gH 396 (524)
T 2j04_B 342 DIATTK--------TTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAV----H------------PLVSR 396 (524)
T ss_dssp GHHHHC--------EEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCC----E------------EEEEC
T ss_pred CCCccc--------ccccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccc----e------------eeecC
Confidence 654332 223343 347899999998 78999999999999999986642 1 24567
Q ss_pred ccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC
Q 010256 341 IASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (514)
Q Consensus 341 ~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 419 (514)
.+.|++++|+|+|++|++|+. ++|++||+.. +.+.......... ....+++++|+|+++.+. ...
T Consensus 397 ~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~--~~~~~~~~~~~~~----------~~~~v~~v~~sp~g~~~~-~~~- 462 (524)
T 2j04_B 397 ETTITAIGVSRLHPMVLAGSADGSLIITNAAR--RLLHGIKNSSATQ----------KSLRLWKWDYSIKDDKYR-IDS- 462 (524)
T ss_dssp SSCEEEEECCSSCCBCEEEETTTEEECCBSCS--STTTCC------C----------CCCEEEECBCCSSSCEEE-ECC-
T ss_pred CCceEEEEeCCCCCeEEEEECCCEEEEEechH--hhccccccCccce----------eeeEEEEeccCCCCCeEE-ccC-
Confidence 789999999999999999865 9999999864 3333221111000 001145889999999653 222
Q ss_pred CcEEEEecCCCceeeeeecCCCcceeEEEECCCCC---ceeecCCCCeEEE
Q 010256 420 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP---SRPLGSLSGVVRR 467 (514)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~s~s~d~~v~i 467 (514)
.+.+|+.........++.+|..+|.+++|+|+++ ++|+|+.||.|||
T Consensus 463 -~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrl 512 (524)
T 2j04_B 463 -SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTL 512 (524)
T ss_dssp -CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEE
T ss_pred -CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEE
Confidence 2334443311234478899999999999999965 9999999999999
No 92
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-32 Score=248.60 Aligned_cols=283 Identities=15% Similarity=0.170 Sum_probs=222.8
Q ss_pred cceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCccee
Q 010256 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (514)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 168 (514)
.++....+.+|. +.|++++| | ++.+|++++.||.|++||+.+++....
T Consensus 7 ~~~~~~~l~~h~------------~~v~~~~~-~--~~~~l~s~~~dg~v~vw~~~~~~~~~~----------------- 54 (313)
T 3odt_A 7 GYQLSATLKGHD------------QDVRDVVA-V--DDSKVASVSRDGTVRLWSKDDQWLGTV----------------- 54 (313)
T ss_dssp CCEEEEEECCCS------------SCEEEEEE-E--ETTEEEEEETTSEEEEEEESSSEEEEE-----------------
T ss_pred cHHHHHHhhCCC------------CCcEEEEe-c--CCCEEEEEEcCCcEEEEECCCCEEEEE-----------------
Confidence 445677889998 89999999 4 456899999999999999977653221
Q ss_pred cccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEE
Q 010256 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF 248 (514)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 248 (514)
...|...|.+++|+|++++|
T Consensus 55 ------------------------------------------------------------~~~~~~~v~~~~~~~~~~~l 74 (313)
T 3odt_A 55 ------------------------------------------------------------VYTGQGFLNSVCYDSEKELL 74 (313)
T ss_dssp ------------------------------------------------------------EEECSSCEEEEEEETTTTEE
T ss_pred ------------------------------------------------------------eecCCccEEEEEECCCCCEE
Confidence 14566889999999999999
Q ss_pred EEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceec
Q 010256 249 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (514)
Q Consensus 249 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 327 (514)
+++ .|+.|++|++........+ ..+..|...|.++.| ++ .++++++.|+.|++|| .+.. ..
T Consensus 75 ~~~~~dg~i~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~--~~-~~l~~~~~d~~i~~~d--~~~~----~~---- 136 (313)
T 3odt_A 75 LFGGKDTMINGVPLFATSGEDPL-----YTLIGHQGNVCSLSF--QD-GVVISGSWDKTAKVWK--EGSL----VY---- 136 (313)
T ss_dssp EEEETTSCEEEEETTCCTTSCC------CEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEE--TTEE----EE----
T ss_pred EEecCCCeEEEEEeeecCCCCcc-----cchhhcccCEEEEEe--cC-CEEEEEeCCCCEEEEc--CCcE----EE----
Confidence 999 9999999999755322111 245778999999999 34 6899999999999999 2222 12
Q ss_pred cCCCCccceeeccccceeEEEEec-CCCEEEEEeC-CeEEEEEccCCCCceeeeee-ccccccccccccccCCccceeeE
Q 010256 328 QEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFEC 404 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~ 404 (514)
.+..|...+.+++|+| ++.++++++. +.|++||. .+....+.. |... +.++
T Consensus 137 --------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~---~~~~~~~~~~~~~~---------------i~~~ 190 (313)
T 3odt_A 137 --------NLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN---DKVIKTFSGIHNDV---------------VRHL 190 (313)
T ss_dssp --------EEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET---TEEEEEECSSCSSC---------------EEEE
T ss_pred --------ecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec---CceEEEEeccCccc---------------EEEE
Confidence 2445668899999998 8999998765 99999993 445555554 3332 4489
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccc
Q 010256 405 CLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD 484 (514)
Q Consensus 405 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~ 484 (514)
+|+|++. +++++.||.|++||+.+++ ....+.+|..++.+++|+|++ .+++++.|+.|++++- ...........
T Consensus 191 ~~~~~~~-~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~---~~~~~~~~~~~ 264 (313)
T 3odt_A 191 AVVDDGH-FISCSNDGLIKLVDMHTGD-VLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSK---ENGSLKQVITL 264 (313)
T ss_dssp EEEETTE-EEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECT---TTCCEEEEEEC
T ss_pred EEcCCCe-EEEccCCCeEEEEECCchh-hhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEEC---CCCceeEEEec
Confidence 9999998 8899999999999999874 447888999999999999999 6899999999999432 22122223335
Q ss_pred cccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 485 FSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 485 ~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
|...|.+++|+|++++++++.++.+.+|.
T Consensus 265 ~~~~i~~~~~~~~~~~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 265 PAISIWSVDCMSNGDIIVGSSDNLVRIFS 293 (313)
T ss_dssp SSSCEEEEEECTTSCEEEEETTSCEEEEE
T ss_pred cCceEEEEEEccCCCEEEEeCCCcEEEEe
Confidence 77899999999999988777788999996
No 93
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.5e-33 Score=259.30 Aligned_cols=247 Identities=13% Similarity=0.122 Sum_probs=185.7
Q ss_pred cCccCeEEEEECCC---CCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEE------ecCCCcEEEE
Q 010256 231 AHDYHINSISNNSD---GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF------HPTHCNMLAY 300 (514)
Q Consensus 231 ~h~~~v~~~~~~~~---~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~------~p~~~~~l~~ 300 (514)
+|...|.+++|+|+ +++|+++ .|+.|++||+++.+.... .+.+|...|.++.| +|++ ++|++
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~ 134 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY-------SVKGHKEIINAIDGIGGLGIGEGA-PEIVT 134 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE-------EECCCSSCEEEEEEESGGGCC-CC-CEEEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE-------EEEecccceEEEeeccccccCCCc-cEEEE
Confidence 56788999999998 6999999 899999999997662322 45679999999965 5787 89999
Q ss_pred EecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE----EecCCCEEEEEeC-CeEEEEEccCCCCc
Q 010256 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK----FARNGRHILSRDY-MTLKLWDINMDSGP 375 (514)
Q Consensus 301 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~s~~g~~l~~~~~-~~i~iwd~~~~~~~ 375 (514)
++.||.|++||++++... ...+..+.. .+...+.+++ |+|+++++++++. +.|++||++. ++.
T Consensus 135 ~~~d~~i~vwd~~~~~~~---~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~ 202 (357)
T 3i2n_A 135 GSRDGTVKVWDPRQKDDP---VANMEPVQG--------ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN-MAL 202 (357)
T ss_dssp EETTSCEEEECTTSCSSC---SEEECCCTT--------SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT-TEE
T ss_pred EeCCCeEEEEeCCCCCCc---ceeccccCC--------CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc-Cce
Confidence 999999999999987632 233332211 0123788888 7889999999875 9999999986 544
Q ss_pred eeeeeeccccccccccccccCCccceeeEEEcC---CCCEEEEEeCCCcEEEEecCCCceee----eeecCCCcceeEEE
Q 010256 376 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSG---DGGRVATGSYSNLFRVFGCSEGSAES----TTLEASKNPMRRQV 448 (514)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~v~~~~ 448 (514)
.. ...|... +.+++|+| ++++|++++.||.|++||+.++.... ..+.+|...|.++.
T Consensus 203 ~~-~~~~~~~---------------v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~ 266 (357)
T 3i2n_A 203 RW-ETNIKNG---------------VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVR 266 (357)
T ss_dssp EE-EEECSSC---------------EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEE
T ss_pred ee-ecCCCCc---------------eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEE
Confidence 32 3334332 44999999 99999999999999999998753321 12348999999999
Q ss_pred ECCCCC-ceeecCCCCeEEEeeCCCCCcc----------------ccCCcccccccceEEEEEcCCCCEEE-EEe-cCcE
Q 010256 449 QTPSRP-SRPLGSLSGVVRRVKGADNSAL----------------DANGNAFDFSMKLLHLAWHPSENSIA-CAA-SNSL 509 (514)
Q Consensus 449 ~~~~~~-~l~s~s~d~~v~i~~~~~~~~~----------------~~~~~~~~~~~~v~~~~~spd~~~l~-~~~-~~~~ 509 (514)
|+|+++ ++++++.|+.|++++-...... ........|...|++++|+|++++|+ +++ ++.+
T Consensus 267 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i 346 (357)
T 3i2n_A 267 HLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTV 346 (357)
T ss_dssp EETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred ECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcE
Confidence 999999 8999999999999322111100 01112335889999999999999998 576 6788
Q ss_pred EEEe
Q 010256 510 YMYY 513 (514)
Q Consensus 510 ~i~~ 513 (514)
++|.
T Consensus 347 ~iw~ 350 (357)
T 3i2n_A 347 RVLI 350 (357)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 94
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.7e-34 Score=268.54 Aligned_cols=243 Identities=12% Similarity=0.095 Sum_probs=183.7
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|++++| ++++++|++++.|+.|++||+.++.....
T Consensus 12 ~~v~~~~~--s~~g~~l~~~~~d~~i~iw~~~~~~~~~~----------------------------------------- 48 (377)
T 3dwl_C 12 KPSYEHAF--NSQRTEFVTTTATNQVELYEQDGNGWKHA----------------------------------------- 48 (377)
T ss_dssp SCCSCCEE--CSSSSEEECCCSSSCBCEEEEETTEEEEC-----------------------------------------
T ss_pred CcEEEEEE--CCCCCEEEEecCCCEEEEEEccCCceEEE-----------------------------------------
Confidence 67999999 55778999999999999999876531110
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
.. +.+|...|.+++|+|++++|+++ .|++|++||+++.+.....
T Consensus 49 ---------------------------------~~-~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~- 93 (377)
T 3dwl_C 49 ---------------------------------RT-FSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT- 93 (377)
T ss_dssp ---------------------------------CC-BCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCE-
T ss_pred ---------------------------------EE-EecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeee-
Confidence 01 25788999999999999999999 8999999999866511111
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeec-cccceeEEEEe
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFA 350 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s 350 (514)
..+..|...|.+++|+|++ ++|++++.|+.|++||+++++.... .+ .+.+ |...|.+++|+
T Consensus 94 ----~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~-~~------------~~~~~h~~~v~~~~~~ 155 (377)
T 3dwl_C 94 ----LVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWV-SK------------HLKRPLRSTILSLDWH 155 (377)
T ss_dssp ----EECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCC-CE------------EECSSCCSCEEEEEEC
T ss_pred ----eEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCccccee-ee------------EeecccCCCeEEEEEc
Confidence 1456789999999999998 8999999999999999988653100 11 1333 66899999999
Q ss_pred cCCCEEEEEeC-CeEEEEEccCC-----------------CCceeeeeeccccccccccccccCCccceeeEEEcCCCCE
Q 010256 351 RNGRHILSRDY-MTLKLWDINMD-----------------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (514)
Q Consensus 351 ~~g~~l~~~~~-~~i~iwd~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 412 (514)
|++++|++++. +.|++||+... ++++..+ .|.. .|.+++|+|++++
T Consensus 156 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------------~v~~~~~sp~~~~ 219 (377)
T 3dwl_C 156 PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG---------------WVHAVGFSPSGNA 219 (377)
T ss_dssp TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS---------------SEEEEEECTTSSC
T ss_pred CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc---------------eEEEEEECCCCCE
Confidence 99999999764 99999999631 1111222 2222 2559999999999
Q ss_pred EEEEeCCCcEEEEecCCCcee---eeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 413 VATGSYSNLFRVFGCSEGSAE---STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 413 l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|++++.||.|++||+.+++.. ...+.+|..++.+++|+|++++|++++.|+.+.+
T Consensus 220 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 277 (377)
T 3dwl_C 220 LAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILL 277 (377)
T ss_dssp EEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEE
Confidence 999999999999999987551 4778899999999999999999999998888866
No 95
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2e-32 Score=262.82 Aligned_cols=269 Identities=13% Similarity=0.263 Sum_probs=220.4
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
+|...|.|++| ++++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~-----------------------~~~~~~~h~------------ 173 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE-----------------------CKRILTGHT------------ 173 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-----------------------EEEEECCCS------------
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe-----------------------EEEEEcCCC------------
Confidence 56778999887 79999999999999999987665 446678888
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.+++| ++.++++|+.||.|++||+.+++....
T Consensus 174 ~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~----------------------------------------- 208 (435)
T 1p22_A 174 GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNT----------------------------------------- 208 (435)
T ss_dssp SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEE-----------------------------------------
T ss_pred CcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcEEEE-----------------------------------------
Confidence 88999998 456999999999999999987753221
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+.+|...|.+++|++ ..+++| .|+.|++||+++.......
T Consensus 209 ------------------------------------~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~- 249 (435)
T 1p22_A 209 ------------------------------------LIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLR- 249 (435)
T ss_dssp ------------------------------------ECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEE-
T ss_pred ------------------------------------EcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceee-
Confidence 145778899999974 588888 9999999999866543211
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
..+.+|...|.+++| ++ +++++|+.||.|++||+++++.. .. +.+|...|.+++|+
T Consensus 250 ----~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~~~----~~------------~~~~~~~v~~~~~~- 305 (435)
T 1p22_A 250 ----RVLVGHRAAVNVVDF--DD-KYIVSASGDRTIKVWNTSTCEFV----RT------------LNGHKRGIACLQYR- 305 (435)
T ss_dssp ----EEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTTCCEE----EE------------EECCSSCEEEEEEE-
T ss_pred ----eEecCCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCcCcEE----EE------------EcCCCCcEEEEEeC-
Confidence 145678999999999 45 79999999999999999987652 22 44566789999985
Q ss_pred CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
+.++++|+ |+.|++||+++ ++++..+.+|... |.+++| ++++|++|+.||.|++||+.++
T Consensus 306 -~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~~~~--~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 306 -DRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEEL---------------VRCIRF--DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp -TTEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred -CCEEEEEeCCCeEEEEECCC-CCEEEEEeCCcCc---------------EEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence 67888876 59999999997 8888888887755 337777 7899999999999999998754
Q ss_pred ce--------eeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 431 SA--------ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 431 ~~--------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.. ....+.+|..+|.++.+ ++++|++++.||.|++
T Consensus 367 ~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~i 409 (435)
T 1p22_A 367 LDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 409 (435)
T ss_dssp TSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred CCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEE
Confidence 31 44778899999999999 7889999999999999
No 96
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.1e-31 Score=256.18 Aligned_cols=248 Identities=19% Similarity=0.315 Sum_probs=202.9
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
.+|.+.|+||+|+|+|++||+|+.||.|+|||+.+++ .+..+.+|.
T Consensus 144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-----------------------~~~~~~~h~----------- 189 (420)
T 4gga_A 144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----------------------RLRNMTSHS----------- 189 (420)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS-----------
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-----------------------EEEEEeCCC-----------
Confidence 3688899999999999999999999999999998766 446788888
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..|.++.|. +.++++++.|+.+++||........
T Consensus 190 -~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~----------------------------------------- 223 (420)
T 4gga_A 190 -ARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHV----------------------------------------- 223 (420)
T ss_dssp -SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEE-----------------------------------------
T ss_pred -CceEEEeeC----CCEEEEEeCCCceeEeeecccceee-----------------------------------------
Confidence 789998883 3589999999999999987542100
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
.. +.+|...+..+.++|++++++++ .|+.+++|+...++.....
T Consensus 224 ----------------------------------~~-~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~ 268 (420)
T 4gga_A 224 ----------------------------------AT-LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 268 (420)
T ss_dssp ----------------------------------EE-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC
T ss_pred ----------------------------------EE-ecccccceeeeeecCCCCeeeeeeccccceEEeecccccccee
Confidence 00 25788899999999999999999 9999999999866533211
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEE--ecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYS--SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~--~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
......|...|.+++|+|.+..+++++ +.|+.|++||++++... ..+..+ ..+.++.
T Consensus 269 ----~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~----~~~~~~-------------~~v~~~~ 327 (420)
T 4gga_A 269 ----LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SAVDAH-------------SQVCSIL 327 (420)
T ss_dssp ----SEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE----EEEECS-------------SCEEEEE
T ss_pred ----eeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc----eeeccc-------------cceeeee
Confidence 113466889999999999887787764 47999999999998763 222222 4689999
Q ss_pred EecCCCEEEEEe---CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEE
Q 010256 349 FARNGRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (514)
Q Consensus 349 ~s~~g~~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (514)
|+|+++.+++++ ++.|+|||+.+ ++++.++.+|... |++++|+|||++|++|+.|++|+||
T Consensus 328 ~~~~~~~lv~~sg~~d~~I~iwd~~~-~~~v~~l~gH~~~---------------V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 328 WSPHYKELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSR---------------VLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp EETTTTEEEEEECTTTCCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECTTSSCEEEEETTTEEEEE
T ss_pred ecCCCCeEEEEEecCCCEEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEcCCCCEEEEEecCCeEEEE
Confidence 999999998753 59999999997 8999999998765 4599999999999999999999999
Q ss_pred ecCCCc
Q 010256 426 GCSEGS 431 (514)
Q Consensus 426 d~~~~~ 431 (514)
|+....
T Consensus 392 dv~~~~ 397 (420)
T 4gga_A 392 RCFELD 397 (420)
T ss_dssp CCSCSS
T ss_pred ECCCCC
Confidence 997653
No 97
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-32 Score=254.78 Aligned_cols=278 Identities=14% Similarity=0.062 Sum_probs=202.1
Q ss_pred EEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEe
Q 010256 42 EFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWC 121 (514)
Q Consensus 42 ~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~ 121 (514)
.+.+++.+|++|+.||.|++||+.+++.. ..+. . ..|.++.|+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~-----------------------~~~~--~------------~~v~~~~~~ 85 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTI-----------------------TTIT--T------------PNPRTGGEH 85 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCE-----------------------EEEE--E------------ECCCTTCCC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEE-----------------------EEEe--c------------CCceeeeeC
Confidence 44468889999999999999999877642 2222 1 457777885
Q ss_pred eCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCC
Q 010256 122 QSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPP 201 (514)
Q Consensus 122 ~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 201 (514)
|. +++++.|++|++|+.......
T Consensus 86 ~~-----~~s~s~D~~i~~w~~~~~~~~---------------------------------------------------- 108 (343)
T 3lrv_A 86 PA-----IISRGPCNRLLLLYPGNQITI---------------------------------------------------- 108 (343)
T ss_dssp CS-----EEEECSTTEEEEEETTTEEEE----------------------------------------------------
T ss_pred Cc-----eEEecCCCeEEEEEccCceEE----------------------------------------------------
Confidence 43 899999999999998753211
Q ss_pred CCCCcEEeceeeccccccccccccccccccCccCeEEEEECC--CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcc
Q 010256 202 GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 278 (514)
Q Consensus 202 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 278 (514)
|+ ... ....+.+..+|...|.+++|+| ++++|+++ .|++|++||+++++.. .. ..
T Consensus 109 --------~~----~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~------~~ 166 (343)
T 3lrv_A 109 --------LD----SKT---NKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQY-IV------HS 166 (343)
T ss_dssp --------EE----TTT---CCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEE-EE------EC
T ss_pred --------ee----cCC---cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEE-EE------Ee
Confidence 11 000 0011112246778999999999 99999999 9999999999966542 22 11
Q ss_pred cccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeec-cccceeEEEEecCCCEEE
Q 010256 279 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFARNGRHIL 357 (514)
Q Consensus 279 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~ 357 (514)
..+...+.+++|+|++ .+|++|+.||.|++||+++++.. ... +.. |.++|.+++|+|+|.+|+
T Consensus 167 ~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~~---~~~------------~~~~h~~~v~~l~fs~~g~~l~ 230 (343)
T 3lrv_A 167 AKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQA---SSR------------FPVDEEAKIKEVKFADNGYWMV 230 (343)
T ss_dssp CCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTTSC---CEE------------CCCCTTSCEEEEEECTTSSEEE
T ss_pred cCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCCCC---ccE------------EeccCCCCEEEEEEeCCCCEEE
Confidence 2355679999999999 89999999999999999987652 022 333 668999999999999999
Q ss_pred EEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC-CCcEEEEecCCCceeeee
Q 010256 358 SRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCSEGSAESTT 436 (514)
Q Consensus 358 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~ 436 (514)
+++++.|++||++. .+.+..+..+......+. . .+++|+|+|++|++++. |+.+++|++........
T Consensus 231 s~~~~~v~iwd~~~-~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~- 298 (343)
T 3lrv_A 231 VECDQTVVCFDLRK-DVGTLAYPTYTIPEFKTG---------T-VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT- 298 (343)
T ss_dssp EEESSBEEEEETTS-STTCBSSCCCBC-----C---------C-EEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE-
T ss_pred EEeCCeEEEEEcCC-CCcceeeccccccccccc---------c-eEEEECCCCCEEEEecCCCCcEEEEEEcccccceE-
Confidence 98888999999997 665555443211110000 0 25999999999999998 99999999976533211
Q ss_pred ecCCCcceeEEEECC---CCCceeecCCCCeEEE
Q 010256 437 LEASKNPMRRQVQTP---SRPSRPLGSLSGVVRR 467 (514)
Q Consensus 437 ~~~~~~~v~~~~~~~---~~~~l~s~s~d~~v~i 467 (514)
. .++..+.|.+ +.+.+++++.|+.+++
T Consensus 299 ~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 328 (343)
T 3lrv_A 299 K----DEESALCLQSDTADFTDMDVVCGDGGIAA 328 (343)
T ss_dssp E----EEEEECCC----CCCCEEEEEEETTEEEE
T ss_pred e----cCceeEecCccccccceeEEEecCCceEE
Confidence 1 5667788888 8889999999999988
No 98
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=265.79 Aligned_cols=288 Identities=8% Similarity=0.065 Sum_probs=207.1
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
...|.+++| ++||+++|+++.|++|+ |...++.. .. +...++ .++|+|+|.
T Consensus 15 ~~~v~sv~~--SpDG~~iASas~D~TV~--d~~~~~~l---~g--------h~~~v~-------~V~FsPdg~------- 65 (588)
T 2j04_A 15 EDWKNNLTW--ARDGTLYLTTFPDISIG--QPKYAKDI---NC--------NSKNLF-------HVKEFPLEF------- 65 (588)
T ss_dssp SSSSCCEEE--CTTSCEEEECSSSEEEE--EECCCSCC---SS--------BGGGTE-------EEEEECCCC-------
T ss_pred hccEEEEEE--CCCCCEEEEEcCCceee--ccccccee---cC--------CCccEE-------EEEECCCCC-------
Confidence 378999999 78999999999999999 65444321 11 134455 888999883
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
++.+.+|+ .+. ...+...|...|.+++|+|+|++||++ .||.|++||.+. ...
T Consensus 66 ------------~~~~~~~~----~~~------~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~- 119 (588)
T 2j04_A 66 ------------ENKLDFEL----AQQ------NGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLT- 119 (588)
T ss_dssp ------------CCTTTTSC----CCS------SCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEE-
T ss_pred ------------cceEEEEe----CCC------ceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eee-
Confidence 23344333 221 112223567899999999999999999 999999999642 222
Q ss_pred eccCCCcccccCC-----ceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccc---cccceeccCCCCccceeecccc
Q 010256 271 VDVKPANMEDLTE-----VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 271 ~~~~~~~~~~~~~-----~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
.+. |.. .+.+++|+|+| ++|++|+.||+|++||+.++..... .+.+++.+ ..+|.+
T Consensus 120 ------~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~--------~~gh~~ 183 (588)
T 2j04_A 120 ------NLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS--------DAGSKD 183 (588)
T ss_dssp ------ECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS--------CTTCCC
T ss_pred ------ecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecc--------cccccc
Confidence 233 333 59999999999 8999999999999999988653110 02233222 245678
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEEccCCCCc---eeeee-eccccccccccccccCCccceeeEEEcCCCCEEEEEeC
Q 010256 343 SISDIKFARNGRHILSRDYMTLKLWDINMDSGP---VATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (514)
.|.+++|+|+| +++++.|++|++||+.. +.. ..++. +|... |.+++|+ |++||+++
T Consensus 184 ~V~sVawSPdg-Laass~D~tVrlWd~~~-~~~~~~~~tL~~~h~~~---------------V~svaFs--g~~LASa~- 243 (588)
T 2j04_A 184 WVTHIVWYEDV-LVAALSNNSVFSMTVSA-SSHQPVSRMIQNASRRK---------------ITDLKIV--DYKVVLTC- 243 (588)
T ss_dssp CEEEEEEETTE-EEEEETTCCEEEECCCS-SSSCCCEEEEECCCSSC---------------CCCEEEE--TTEEEEEC-
T ss_pred cEEEEEEcCCc-EEEEeCCCeEEEEECCC-CccccceeeecccccCc---------------EEEEEEE--CCEEEEEe-
Confidence 99999999999 55556779999999986 442 23453 45433 3489999 68999887
Q ss_pred CCcEEEEecCCCceeeeeecCCCcceeEEEE--CCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcC
Q 010256 419 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQ--TPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP 496 (514)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 496 (514)
++.|++||+.++... ....+|...+..+.+ +|++..|+++++||+ ++.... .++++|
T Consensus 244 ~~tIkLWd~~~~~~~-~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d-------------------~~~~sp 302 (588)
T 2j04_A 244 PGYVHKIDLKNYSIS-SLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED-------------------ELHVTA 302 (588)
T ss_dssp SSEEEEEETTTTEEE-EEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS-------------------SEEEEC
T ss_pred CCeEEEEECCCCeEE-EEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec-------------------cEEECC
Confidence 699999999976432 233389999999999 999999999999999 772111 356888
Q ss_pred CCCEEEEEecCcEEEE
Q 010256 497 SENSIACAASNSLYMY 512 (514)
Q Consensus 497 d~~~l~~~~~~~~~i~ 512 (514)
|+..++++ ++.+++|
T Consensus 303 d~~l~a~~-d~~v~lW 317 (588)
T 2j04_A 303 DNIIAPYL-EKKFKKW 317 (588)
T ss_dssp CCSSHHHH-HHHHHHT
T ss_pred CceEEEEc-CCEEEEE
Confidence 88877764 4444444
No 99
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.5e-32 Score=256.30 Aligned_cols=273 Identities=12% Similarity=0.136 Sum_probs=218.2
Q ss_pred ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
.+.++.| +++ .+++++.|+.|++||+.+++......... .+.+. .++|+|+++.+
T Consensus 95 ~~~~~~~--s~~--~l~~~~~d~~v~lw~~~~~~~~~~~~~~~-------~~~v~-------~v~~s~~~~~l------- 149 (401)
T 4aez_A 95 YLNLLDW--SNL--NVVAVALERNVYVWNADSGSVSALAETDE-------STYVA-------SVKWSHDGSFL------- 149 (401)
T ss_dssp TCBCEEE--CTT--SEEEEEETTEEEEEETTTCCEEEEEECCT-------TCCEE-------EEEECTTSSEE-------
T ss_pred eEEEEee--cCC--CEEEEECCCeEEEeeCCCCcEeEeeecCC-------CCCEE-------EEEECCCCCEE-------
Confidence 3556777 433 58888999999999999998776655431 23444 88999999998
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeec
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 272 (514)
++++.+|.|++|| +... ..... +.+|...|.+++| +++.|+++ .|+.|++||++.......
T Consensus 150 -----~~~~~dg~i~iwd-~~~~------~~~~~-~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~--- 211 (401)
T 4aez_A 150 -----SVGLGNGLVDIYD-VESQ------TKLRT-MAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIG--- 211 (401)
T ss_dssp -----EEEETTSCEEEEE-TTTC------CEEEE-ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE---
T ss_pred -----EEECCCCeEEEEE-CcCC------eEEEE-ecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceee---
Confidence 9999999999999 3322 22233 3689999999999 56799998 999999999985554433
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 352 (514)
.+.+|...|.+++|+|++ .+|++|+.|+.|++||++++... .. +..|...|.+++|+|+
T Consensus 212 ----~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~----~~------------~~~~~~~v~~~~~~p~ 270 (401)
T 4aez_A 212 ----TLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPK----FT------------KTNHNAAVKAVAWCPW 270 (401)
T ss_dssp ----EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEE----EE------------ECCCSSCCCEEEECTT
T ss_pred ----EEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCcc----EE------------ecCCcceEEEEEECCC
Confidence 456789999999999998 89999999999999999986542 22 3456688999999997
Q ss_pred CC-EEEEEe---CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE--eCCCcEEEEe
Q 010256 353 GR-HILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG--SYSNLFRVFG 426 (514)
Q Consensus 353 g~-~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~--~~dg~i~iwd 426 (514)
+. ++++++ ++.|++||+.+ ++++..+..+.. +.+++|+|++++|+++ +.||.|++||
T Consensus 271 ~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~~~~~----------------v~~~~~s~~~~~l~~~~g~~dg~i~v~~ 333 (401)
T 4aez_A 271 QSNLLATGGGTMDKQIHFWNAAT-GARVNTVDAGSQ----------------VTSLIWSPHSKEIMSTHGFPDNNLSIWS 333 (401)
T ss_dssp STTEEEEECCTTTCEEEEEETTT-CCEEEEEECSSC----------------EEEEEECSSSSEEEEEECTTTCEEEEEE
T ss_pred CCCEEEEecCCCCCEEEEEECCC-CCEEEEEeCCCc----------------EEEEEECCCCCeEEEEeecCCCcEEEEe
Confidence 75 555554 69999999997 777777754322 4489999999999984 4899999999
Q ss_pred cCCCceee-eeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 427 CSEGSAES-TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 427 ~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+.++.... ..+.+|...|..++|+|++++|++++.|+.|++
T Consensus 334 ~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~i 375 (401)
T 4aez_A 334 YSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKF 375 (401)
T ss_dssp EETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEE
T ss_pred cCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 99864332 457799999999999999999999999999999
No 100
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.2e-31 Score=249.12 Aligned_cols=271 Identities=12% Similarity=0.062 Sum_probs=208.6
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|.+++|+| ++.+|++++.|+.|++|++.+++....
T Consensus 12 ~~v~~~~~s~--~~~~l~~~~~d~~v~iw~~~~~~~~~~----------------------------------------- 48 (342)
T 1yfq_A 12 DYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVD----------------------------------------- 48 (342)
T ss_dssp SCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTTEEE-----------------------------------------
T ss_pred CcEEEEEEcC--CCCEEEEEcCCCeEEEEEeCCCCcccc-----------------------------------------
Confidence 8899999965 677999999999999999876531000
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCC-EEEEe-cCCeEEEEec-cCCCceee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNL-EISNQSFN 269 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~-~~~~~~~~ 269 (514)
... ..+|...|.+++|+|+++ +|+++ .|+.|++||+ ++... .
T Consensus 49 --------------------------------~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~- 93 (342)
T 1yfq_A 49 --------------------------------LLQ-SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-Q- 93 (342)
T ss_dssp --------------------------------EEE-EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-E-
T ss_pred --------------------------------cee-eeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-E-
Confidence 000 146778999999999999 99999 8999999999 75533 1
Q ss_pred eeccCCCcccc--cCCceEEEEEecCCCcEEEEEecCCeEEEEEcCC---------CccccccccceeccCCCCccceee
Q 010256 270 IVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ---------SALCDTHSKLFEEQEAPGTRSFFT 338 (514)
Q Consensus 270 ~~~~~~~~~~~--~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 338 (514)
.+.+ |...|.+++|+| + .+|++++.|+.|++||+++ ++.. ..+ .
T Consensus 94 -------~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~------------~ 148 (342)
T 1yfq_A 94 -------ALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS----NNT------------K 148 (342)
T ss_dssp -------ECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCS----SSS------------S
T ss_pred -------eccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCee----eEE------------e
Confidence 4566 899999999999 7 8999999999999999986 4321 111 1
Q ss_pred ccccceeEEEEecCCCEEEEE-eCCeEEEEEccC-CCCceeeee-eccccccccccccccCCccceeeEEEcC-CCCEEE
Q 010256 339 EIIASISDIKFARNGRHILSR-DYMTLKLWDINM-DSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVA 414 (514)
Q Consensus 339 ~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~ 414 (514)
|...|.+++|+|++ ++++ .++.|++||++. ......... .+.. .+.+++|+| ++++|+
T Consensus 149 -~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---------------~i~~i~~~~~~~~~l~ 210 (342)
T 1yfq_A 149 -VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY---------------QIRDVALLPKEQEGYA 210 (342)
T ss_dssp -SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSS---------------CEEEEEECSGGGCEEE
T ss_pred -eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCC---------------ceeEEEECCCCCCEEE
Confidence 44789999999987 5555 559999999985 223222222 2222 145899999 999999
Q ss_pred EEeCCCcEEEEecCCC-----ceeeeeecCCCc---------ceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCC
Q 010256 415 TGSYSNLFRVFGCSEG-----SAESTTLEASKN---------PMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG 480 (514)
Q Consensus 415 s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~---------~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~ 480 (514)
+++.||.|++|++... ......+..|.. +|.+++|+|++++|++++.||.|++++-.. .....
T Consensus 211 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~---~~~~~ 287 (342)
T 1yfq_A 211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT---RKKIK 287 (342)
T ss_dssp EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT---TEEEE
T ss_pred EEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc---HhHhh
Confidence 9999999999999876 244577788765 999999999999999999999999943321 12222
Q ss_pred ccccc-ccceEEEEEcCCCCEEEEEecCcE
Q 010256 481 NAFDF-SMKLLHLAWHPSENSIACAASNSL 509 (514)
Q Consensus 481 ~~~~~-~~~v~~~~~spd~~~l~~~~~~~~ 509 (514)
....| ...|.+++ |++++|++++.++.
T Consensus 288 ~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 288 NFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp ECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred hhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 33356 88999999 99999999986653
No 101
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=8.5e-32 Score=256.54 Aligned_cols=313 Identities=13% Similarity=0.183 Sum_probs=219.2
Q ss_pred eeeccCCCccccccccccccceeEEEEeeCC-CCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccc
Q 010256 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (514)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (514)
..+.+|. +.|++++|+ + ++.+|++++.||.|++||+.+++.........
T Consensus 37 ~~~~~h~------------~~v~~~~~s--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---------------- 86 (408)
T 4a11_B 37 DVERIHG------------GGINTLDIE--PVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA---------------- 86 (408)
T ss_dssp EECCCCS------------SCEEEEEEC--TTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE----------------
T ss_pred eeeeccC------------CcEEEEEEe--cCCCCEEEEEcCCCeEEEEECCCCcccceEeccc----------------
Confidence 4567787 899999994 5 67899999999999999998764221111000
Q ss_pred cCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe
Q 010256 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA 251 (514)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~ 251 (514)
. .........+|...|.+++|+| ++.+|+++
T Consensus 87 ----------------------------------------~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 87 ----------------------------------------V--------CSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp ----------------------------------------E--------EEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred ----------------------------------------c--------ccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 0 0000001256889999999999 77889998
Q ss_pred -cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCC--cEEEEEecCCeEEEEEcCCCccccccccceecc
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC--NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 328 (514)
.|+.|++||+++.+.... ..+...+.++.++|.+. .++++++.|+.|++||+++++.. ..
T Consensus 119 ~~d~~i~iwd~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~----~~---- 181 (408)
T 4a11_B 119 SFDKTLKVWDTNTLQTADV---------FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS----HI---- 181 (408)
T ss_dssp ETTSEEEEEETTTTEEEEE---------EECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC----EE----
T ss_pred eCCCeEEEeeCCCCcccee---------ccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee----ee----
Confidence 899999999986554322 22577899999998642 49999999999999999887642 22
Q ss_pred CCCCccceeeccccceeEEEEecCCCE-EEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE
Q 010256 329 EAPGTRSFFTEIIASISDIKFARNGRH-ILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (514)
+.+|...|.+++|+|++++ +++++ ++.|++||++....++..+..+..................|.+++|
T Consensus 182 --------~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 182 --------LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp --------ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred --------ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 4456689999999999984 77775 4999999998744456655443322111111111112224669999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCceeeeeecC-----CCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCc
Q 010256 407 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-----SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGN 481 (514)
Q Consensus 407 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~ 481 (514)
+|++++|++++.||.|++||+.+++... .... ....+...........+++++.|+.+++++-... .....
T Consensus 254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~ 329 (408)
T 4a11_B 254 TSDGLHLLTVGTDNRMRLWNSSNGENTL-VNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---EQITM 329 (408)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCBCC-CCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---CEEEE
T ss_pred cCCCCEEEEecCCCeEEEEECCCCccce-eccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---cceee
Confidence 9999999999999999999999875432 2221 1222333333455667777888999999433221 22223
Q ss_pred ccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 482 AFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 482 ~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
...|...|++++|+|++++|++++ ++.+.+|.
T Consensus 330 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 330 LKGHYKTVDCCVFQSNFQELYSGSRDCNILAWV 362 (408)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred eccCCCeEEEEEEcCCCCEEEEECCCCeEEEEe
Confidence 345889999999999999999888 55688886
No 102
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=9.8e-32 Score=255.34 Aligned_cols=288 Identities=15% Similarity=0.192 Sum_probs=213.9
Q ss_pred ceEEEEEcCCCCeE-EEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 37 IISAIEFDKSGDHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 37 ~V~~~~~s~~g~~l-~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
....++++|+...+ ++++.||.|+||++...... ......+.+|. ..|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-------------------~~~~~~~~~h~------------~~V 84 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-------------------DKNVPLVCGHT------------APV 84 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-------------------CTTCCCBCCCS------------SCE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-------------------CCCCceEecCC------------CCE
Confidence 44568899877544 45789999999998654321 01223467787 889
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
++++|+|. ++.+|++++.||.|++||+.++......
T Consensus 85 ~~~~~~p~-~~~~l~s~s~dg~v~vw~~~~~~~~~~~------------------------------------------- 120 (402)
T 2aq5_A 85 LDIAWCPH-NDNVIASGSEDCTVMVWEIPDGGLVLPL------------------------------------------- 120 (402)
T ss_dssp EEEEECTT-CTTEEEEEETTSEEEEEECCTTCCSSCB-------------------------------------------
T ss_pred EEEEeCCC-CCCEEEEEeCCCeEEEEEccCCCCcccc-------------------------------------------
Confidence 99999541 6779999999999999999876311000
Q ss_pred CcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC-CEEEEe-cCCeEEEEeccCCCceeeeecc
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
..+... +.+|...|.+++|+|++ .+|+++ .|+.|++||+++++...
T Consensus 121 --------------------------~~~~~~-~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~----- 168 (402)
T 2aq5_A 121 --------------------------REPVIT-LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL----- 168 (402)
T ss_dssp --------------------------CSCSEE-EECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEE-----
T ss_pred --------------------------CCceEE-ecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccE-----
Confidence 001111 36788999999999998 689998 99999999999665443
Q ss_pred CCCcc--cccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccc-eeEEEEe
Q 010256 274 KPANM--EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS-ISDIKFA 350 (514)
Q Consensus 274 ~~~~~--~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~s 350 (514)
.+ ..|...|.+++|+|++ .+|++++.|+.|++||+++++.. ..+. ..|.+. +.++.|+
T Consensus 169 ---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~-----------~~~~~~~~~~~~~~ 229 (402)
T 2aq5_A 169 ---TLGPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVV----AEKD-----------RPHEGTRPVHAVFV 229 (402)
T ss_dssp ---EECTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEE----EEEE-----------CSSCSSSCCEEEEC
T ss_pred ---EEecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCcee----eeec-----------cCCCCCcceEEEEc
Confidence 33 5689999999999998 89999999999999999987653 2221 233344 8999999
Q ss_pred cCCCEEEEE----eCCeEEEEEccCCCCceeeeee-ccccccccccccccCCccceeeEEEcCCCCEEE-EEeCCCcEEE
Q 010256 351 RNGRHILSR----DYMTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRV 424 (514)
Q Consensus 351 ~~g~~l~~~----~~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~i 424 (514)
|++++|++| .++.|++||++....++..... +... +.+++|+|++++|+ +|+.||.|++
T Consensus 230 ~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~g~~dg~i~i 294 (402)
T 2aq5_A 230 SEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSG---------------VLLPFFDPDTNIVYLCGKGDSSIRY 294 (402)
T ss_dssp STTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSS---------------CEEEEEETTTTEEEEEETTCSCEEE
T ss_pred CCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCc---------------eeEEEEcCCCCEEEEEEcCCCeEEE
Confidence 999999998 4599999999873333433331 2211 34899999999987 4557999999
Q ss_pred EecCCCceeeeeecC--CCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 425 FGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 425 wd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
||+.+++.....+.. |..++.+++|+|++.+++++ ++.+++
T Consensus 295 ~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~--~~~~~~ 337 (402)
T 2aq5_A 295 FEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK--CEIARF 337 (402)
T ss_dssp EEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG--TEEEEE
T ss_pred EEecCCCcceEeecccccCCcccceEEecccccceec--ceeEEE
Confidence 999987642344443 56899999999999998865 557777
No 103
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9.2e-31 Score=252.17 Aligned_cols=283 Identities=15% Similarity=0.212 Sum_probs=222.4
Q ss_pred cccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceee
Q 010256 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (514)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (514)
-..|+.... + ......+|.+.|++++|+ +++|++|+.||.|++||+.+++ ..
T Consensus 141 i~vwd~~~~--~-~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~-----------------------~~ 192 (445)
T 2ovr_B 141 LKVWSAVTG--K-CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE-----------------------CI 192 (445)
T ss_dssp EEEEETTTC--C-EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE-----------------------EE
T ss_pred EEEEECCCC--c-EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc-----------------------EE
Confidence 345665542 1 112345799999999998 6799999999999999998765 44
Q ss_pred eeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccccc
Q 010256 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (514)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (514)
..+.+|. ..|.++.|. +..+++++.||.|++||+.+++....
T Consensus 193 ~~~~~h~------------~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~---------------------- 234 (445)
T 2ovr_B 193 HTLYGHT------------STVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHV---------------------- 234 (445)
T ss_dssp EEECCCS------------SCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEE----------------------
T ss_pred EEECCCC------------CcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEE----------------------
Confidence 6677888 889999993 34899999999999999987653221
Q ss_pred CCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-c
Q 010256 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 252 (514)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~ 252 (514)
+.+|...|.+++| ++++++++ .
T Consensus 235 -------------------------------------------------------~~~~~~~v~~~~~--~~~~l~~~~~ 257 (445)
T 2ovr_B 235 -------------------------------------------------------LMGHVAAVRCVQY--DGRRVVSGAY 257 (445)
T ss_dssp -------------------------------------------------------EECCSSCEEEEEE--CSSCEEEEET
T ss_pred -------------------------------------------------------EcCCcccEEEEEE--CCCEEEEEcC
Confidence 1456788899998 67889988 9
Q ss_pred CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCC
Q 010256 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (514)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 332 (514)
|+.|++||+++.+... .+.+|...|.++.| ++ ..+++++.|+.|++||+++++.. ..
T Consensus 258 dg~i~iwd~~~~~~~~--------~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~----~~-------- 314 (445)
T 2ovr_B 258 DFMVKVWDPETETCLH--------TLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCI----HT-------- 314 (445)
T ss_dssp TSCEEEEEGGGTEEEE--------EECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEE----EE--------
T ss_pred CCEEEEEECCCCcEeE--------EecCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEE----EE--------
Confidence 9999999998665443 45678899999999 56 79999999999999999987652 22
Q ss_pred ccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC
Q 010256 333 TRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (514)
Q Consensus 333 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 411 (514)
+.+|...+.++.++ +.++++++ |+.|++||+++ ++.+..+..+.... ..|.+++|+ ++
T Consensus 315 ----~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~------------~~v~~~~~~--~~ 373 (445)
T 2ovr_B 315 ----LTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQ------------SAVTCLQFN--KN 373 (445)
T ss_dssp ----ECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTT-CCEEEEECSTTSCS------------SCEEEEEEC--SS
T ss_pred ----EcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCC-CcEEEEEccCCCCC------------CCEEEEEEC--CC
Confidence 34455678877775 66888876 59999999987 88888877633211 114478884 68
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeee-----cCCCcceeEEEECCCCCceeecCCCCe
Q 010256 412 RVATGSYSNLFRVFGCSEGSAESTTL-----EASKNPMRRQVQTPSRPSRPLGSLSGV 464 (514)
Q Consensus 412 ~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~s~d~~ 464 (514)
+|++|+.||.|++||+.+++.. ..+ .+|...|.+++|+|++.++++++.||+
T Consensus 374 ~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 374 FVITSSDDGTVKLWDLKTGEFI-RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp EEEEEETTSEEEEEETTTCCEE-EEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred EEEEEeCCCeEEEEECCCCcee-eeeeccccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence 9999999999999999988544 444 478899999999999999999999997
No 104
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.2e-31 Score=253.20 Aligned_cols=229 Identities=14% Similarity=0.136 Sum_probs=151.1
Q ss_pred cccCccCeEEEEECC--------CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEE
Q 010256 229 AHAHDYHINSISNNS--------DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA 299 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~--------~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~ 299 (514)
+.+|.+.|++++|+| |+++|+++ .|++|++||+++..... .+..|...+.+++|+|++.++|+
T Consensus 132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~--------~~~~~~~~v~~v~~~p~~~~~l~ 203 (393)
T 4gq1_A 132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL--------AGYPLSSPGISVQFRPSNPNQLI 203 (393)
T ss_dssp TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE--------EEEECSSCEEEEEEETTEEEEEE
T ss_pred cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee--------eecCCCCCcEEEEECCCCCceEE
Confidence 378999999999998 78999999 99999999998665543 34568889999999999856899
Q ss_pred EEecCCeEEEEEcCCCccccccccceeccCC---------CCccceeeccccceeEEEEe-cCCCEEEEEeC-CeEEEEE
Q 010256 300 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEA---------PGTRSFFTEIIASISDIKFA-RNGRHILSRDY-MTLKLWD 368 (514)
Q Consensus 300 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~~-~~i~iwd 368 (514)
+|+.|+.|++||+++++.............. ........+|...+.++.|+ |+++.|++++. +++++||
T Consensus 204 ~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd 283 (393)
T 4gq1_A 204 VGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWN 283 (393)
T ss_dssp EEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEE
T ss_pred ecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEE
Confidence 9999999999999987653221111100000 00112235678899999997 79999999865 9999999
Q ss_pred ccCCCCceeeeeeccccccccccccc---cCCccceeeEEEcC--CCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcc
Q 010256 369 INMDSGPVATFQVHEHLRPKLCDLYE---NDSIFDKFECCLSG--DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNP 443 (514)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 443 (514)
+.. ++....+..+............ ...........|+| ++.++++|+.||.|++||+.++... ..+..|..+
T Consensus 284 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~-~~~~~~~~~ 361 (393)
T 4gq1_A 284 LFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN-SIPIQLGMP 361 (393)
T ss_dssp C--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC-EEEEECSSC
T ss_pred Ccc-CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE-EEecCCCCc
Confidence 986 6655555554432211110000 00000111344444 4456778889999999999987554 566778889
Q ss_pred eeEEEECCCCCceeecCCCCeEEE
Q 010256 444 MRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 444 v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|.+++|+|+|++||+++.+|.+.+
T Consensus 362 V~svafspdG~~LA~as~~Gv~lv 385 (393)
T 4gq1_A 362 IVDFCWHQDGSHLAIATEGSVLLT 385 (393)
T ss_dssp EEEEEECTTSSEEEEEESSEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEE
Confidence 999999999999999998887555
No 105
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-30 Score=250.85 Aligned_cols=249 Identities=15% Similarity=0.117 Sum_probs=184.2
Q ss_pred cceeEEEEeeCCCCcEE-EEeeCCCeEEEEEcC--ccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 113 EKINKIRWCQSANSALY-LLSTNDKTIKLWKVQ--EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l-~s~~~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.+++| ++++++| ++++.||.|++||+. +++......
T Consensus 103 ~~v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~------------------------------------ 144 (450)
T 2vdu_B 103 SYIRNLRL--TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK------------------------------------ 144 (450)
T ss_dssp CCEEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE------------------------------------
T ss_pred CceEEEEE--cCCCCEEEEEECCCCeEEEEECcCCCCceeeeee------------------------------------
Confidence 57999999 5677786 888999999999997 543221111
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
...|...|.+++|+|++++|+++ .++.|++|++.+.....
T Consensus 145 ---------------------------------------~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~ 185 (450)
T 2vdu_B 145 ---------------------------------------RFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEK 185 (450)
T ss_dssp ---------------------------------------EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSS
T ss_pred ---------------------------------------cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccc
Confidence 02455789999999999999999 89999999998655321
Q ss_pred eeeccCCCcccccCCceEEEEEecC---CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccccee
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (514)
. ....+.+|...|.+++|+|+ + .+|++|+.|+.|++||++++... .. .+.+|...|.
T Consensus 186 ~----~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~----~~-----------~~~~h~~~v~ 245 (450)
T 2vdu_B 186 F----TQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIV----DK-----------WLFGHKHFVS 245 (450)
T ss_dssp C----CCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCE----EE-----------ECCCCSSCEE
T ss_pred c----cceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCcee----ee-----------eecCCCCceE
Confidence 0 01245678999999999999 7 89999999999999999887642 11 1345778999
Q ss_pred EEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccc----------cccCCccceeeEEEcCCCCEEE
Q 010256 346 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL----------YENDSIFDKFECCLSGDGGRVA 414 (514)
Q Consensus 346 ~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~s~~~~~l~ 414 (514)
+++|+ ++++|++++. +.|++||+.+ ++.+..+..+.......... .....-..+..++|+|++++|+
T Consensus 246 ~~~~s-d~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 323 (450)
T 2vdu_B 246 SICCG-KDYLLLSAGGDDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVA 323 (450)
T ss_dssp EEEEC-STTEEEEEESSSEEEEEETTT-CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEE
T ss_pred EEEEC-CCCEEEEEeCCCeEEEEECCC-CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEE
Confidence 99999 9999999764 9999999997 88887776543111000000 0001112356899999999999
Q ss_pred EEe-CCCcEEEEec--CCCc--eeeeeecCCCcceeEEEECCCCCceeecCC
Q 010256 415 TGS-YSNLFRVFGC--SEGS--AESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 415 s~~-~dg~i~iwd~--~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
+++ .|+.|++|++ .++. .....+..| ..+.+++|+|++.++++++.
T Consensus 324 ~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~ 374 (450)
T 2vdu_B 324 FFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNK 374 (450)
T ss_dssp EEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCT
T ss_pred EEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecc
Confidence 998 8999999999 4432 333667777 88999999997655555554
No 106
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.2e-30 Score=239.73 Aligned_cols=276 Identities=11% Similarity=0.182 Sum_probs=213.8
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
.+.|+|+ +++ +|++| .|++|+|||+.+++.......+.+. ..|. +++|+|+++.+
T Consensus 28 ~~~l~WS--~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~------~~V~-------~v~~~~~~~~l-------- 82 (318)
T 4ggc_A 28 LNLVDWS--SGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPG------EYIS-------SVAWIKEGNYL-------- 82 (318)
T ss_dssp CBCEEEC--TTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTT------CCEE-------EEEECTTSSEE--------
T ss_pred ceEEEEC--CCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCC------CeEE-------EEEECCCCCEE--------
Confidence 5779994 454 66655 5999999999999988877665432 3344 88999999998
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeecc
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
++++.|+.|++|+ +.. .++...+ .+|...+.++.+ ++..++++ .++.+++|+.........
T Consensus 83 ----~sgs~Dg~v~iw~-~~~------~~~~~~~-~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~---- 144 (318)
T 4ggc_A 83 ----AVGTSSAEVQLWD-VQQ------QKRLRNM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVA---- 144 (318)
T ss_dssp ----EEEETTSEEEEEE-TTT------TEEEEEE-ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE----
T ss_pred ----EEEECCCcEEEee-cCC------ceeEEEe-cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEE----
Confidence 9999999999999 332 2233333 688888776554 56789999 999999999986655443
Q ss_pred CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 274 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
.+.+|...+..+.+++++ ++|++++.|+.|++||+++++........ ...+.+.|.+++++|++
T Consensus 145 ---~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~~~~v~~~~~~~~~ 208 (318)
T 4ggc_A 145 ---TLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQT------------FTQHQGAVKAVAWCPWQ 208 (318)
T ss_dssp ---EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEE------------ECCCCSCEEEEEECTTS
T ss_pred ---EEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceee------------ecccCCceEEEEecCCC
Confidence 456789999999999999 89999999999999999987643221111 23455789999999977
Q ss_pred CEEE---EEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe--CCCcEEEEec
Q 010256 354 RHIL---SRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS--YSNLFRVFGC 427 (514)
Q Consensus 354 ~~l~---~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~ 427 (514)
..++ +++. +.|++||... .........+.. +..++|+|+++.+++++ .|+.|++||+
T Consensus 209 ~~~~~~~~~~~~~~i~lwd~~~-~~~~~~~~~~~~----------------v~~~~~~~~~~~~~~~sg~~d~~i~iwd~ 271 (318)
T 4ggc_A 209 SNVLATGGGTSDRHIRIWNVCS-GACLSAVDAHSQ----------------VCSILWSPHYKELISGHGFAQNQLVIWKY 271 (318)
T ss_dssp TTEEEEEECTTTCEEEEEETTT-CCEEEEEECSSC----------------EEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred CcEEEEEecCCCCEEEEEeccc-ccccccccceee----------------eeeeeecccccceEEEEEcCCCEEEEEEC
Confidence 6544 2333 9999999986 544444332221 34889999999887654 7999999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+++ ...++.+|..+|++++|+|++++|+|||.|++|++
T Consensus 272 ~~~~-~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 272 PTMA-KVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 310 (318)
T ss_dssp TTCC-EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred CCCc-EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence 9885 45889999999999999999999999999999999
No 107
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2.5e-30 Score=240.62 Aligned_cols=285 Identities=11% Similarity=0.123 Sum_probs=197.2
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
..|.+.|++++|+|||++||+|+.+| ++||++.+.+.. . ..+.
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~-----------------------~--~~~~----------- 58 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI-----------------------M--SQEM----------- 58 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE-----------------------E--EEEC-----------
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee-----------------------e--eeec-----------
Confidence 57899999999999999999998776 789998755421 1 1111
Q ss_pred ccceeEEEEeeCCCCcEE-EEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 112 EEKINKIRWCQSANSALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..+..+.+.+.. ..+ ++++.|++|++||+.+++......
T Consensus 59 -~~~~~~~~~~~~--~~~~~~~~~d~~v~iWd~~~~~~~~~~~------------------------------------- 98 (355)
T 3vu4_A 59 -RHLSKVRMLHRT--NYVAFVTGVKEVVHIWDDVKKQDVSRIK------------------------------------- 98 (355)
T ss_dssp -SCCCEEEECTTS--SEEEEECSSTTEEEEEETTTTEEEEEEE-------------------------------------
T ss_pred -CCeEEEEEcCCC--CEEEEEECCccEEEEEECCCCcEEEEEE-------------------------------------
Confidence 236777785433 355 567888999999999887543211
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCC-Cceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEIS-NQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~-~~~~~ 269 (514)
+...|.+++++++. ++++.++.|++||+.+. +...
T Consensus 99 -----------------------------------------~~~~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~~~- 134 (355)
T 3vu4_A 99 -----------------------------------------VDAPVKDLFLSREF--IVVSYGDVISVFKFGNPWKRIT- 134 (355)
T ss_dssp -----------------------------------------CSSCEEEEEECSSE--EEEEETTEEEEEESSTTCCBSS-
T ss_pred -----------------------------------------CCCceEEEEEcCCE--EEEEEcCEEEEEECCCCceeeE-
Confidence 23468888998764 55556889999999866 3322
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEE--EecCCeEEEEEcCCCccccccccceeccCCCCc-cceeeccccceeE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAY--SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT-RSFFTEIIASISD 346 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~--~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~ 346 (514)
.+.. ....+++++ . ++++ |+.||.|++||++++.............. ..+ ...+.+|...|.+
T Consensus 135 -------~~~~---~~~~~~~s~-~--~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~-~~p~~~~~~~h~~~v~~ 200 (355)
T 3vu4_A 135 -------DDIR---FGGVCEFSN-G--LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKA-ILGKGVLIKAHTNPIKM 200 (355)
T ss_dssp -------CCEE---EEEEEEEET-T--EEEEEESSCTTCEEEEECCC-------------------CCEEECCCSSCEEE
T ss_pred -------Eecc---CCceEEEEc-c--EEEEeCCCcCcEEEEEECCCCCccccccccccccc-cCcccEEEEccCCceEE
Confidence 2222 445566777 3 4444 68899999999987652110000000000 011 3446788899999
Q ss_pred EEEecCCCEEEEEeC-Ce-EEEEEccCCCCceeeee-e-ccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcE
Q 010256 347 IKFARNGRHILSRDY-MT-LKLWDINMDSGPVATFQ-V-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (514)
Q Consensus 347 ~~~s~~g~~l~~~~~-~~-i~iwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (514)
++|+|+|++|++|+. ++ |++||+++ ++.+..+. + |... |.+++|+|+|++|++++.|+.|
T Consensus 201 ~~~s~~g~~l~s~s~d~~~v~iwd~~~-~~~~~~~~~g~h~~~---------------v~~~~~s~~~~~l~s~s~d~~v 264 (355)
T 3vu4_A 201 VRLNRKSDMVATCSQDGTIIRVFKTED-GVLVREFRRGLDRAD---------------VVDMKWSTDGSKLAVVSDKWTL 264 (355)
T ss_dssp EEECTTSSEEEEEETTCSEEEEEETTT-CCEEEEEECTTCCSC---------------EEEEEECTTSCEEEEEETTCEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCCCCc---------------EEEEEECCCCCEEEEEECCCEE
Confidence 999999999999865 98 99999997 88888887 3 5543 4599999999999999999999
Q ss_pred EEEecCCCceee-eeecC---------------------CCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 423 RVFGCSEGSAES-TTLEA---------------------SKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 423 ~iwd~~~~~~~~-~~~~~---------------------~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
++||+....... ..+.. +..+...++|++++++|++++.||.+++
T Consensus 265 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~ 331 (355)
T 3vu4_A 265 HVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIET 331 (355)
T ss_dssp EEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEE
T ss_pred EEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEE
Confidence 999997653211 11111 1223467899999999999999999988
No 108
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.9e-30 Score=243.48 Aligned_cols=282 Identities=10% Similarity=0.117 Sum_probs=208.4
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCC-CCcEEEEeeCCCeEEEEEcCc-cEEEEEeeccCCCccccCCcceec
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFG 169 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~v~~ 169 (514)
....+.+|. +.|++++|+|.. +|.+|++++.||.|++||+.+ ++...
T Consensus 31 ~~~~~~~h~------------~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~------------------- 79 (368)
T 3mmy_A 31 DIEVTSSPD------------DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP------------------- 79 (368)
T ss_dssp CEECSSCCS------------SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-------------------
T ss_pred eeEeccCCC------------CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE-------------------
Confidence 345677887 899999996431 158999999999999999986 32110
Q ss_pred ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE
Q 010256 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 249 (514)
..+.+|...|.+++|+|++++|+
T Consensus 80 ---------------------------------------------------------~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 80 ---------------------------------------------------------KAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp ---------------------------------------------------------EEEEECSSCEEEEEECTTSSEEE
T ss_pred ---------------------------------------------------------EEeccccCCEEEEEECcCCCEEE
Confidence 00256888999999999999999
Q ss_pred Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEE--ecCCCcEEEEEecCCeEEEEEcCCCcccccccccee
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~--~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
++ .|+.|++||+++.+.. .+..|...|.+++| +|++ .+|++++.||.|++||+++++. ...+.
T Consensus 103 s~~~dg~v~iwd~~~~~~~---------~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~----~~~~~ 168 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAI---------QIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNP----MMVLQ 168 (368)
T ss_dssp EEETTSEEEEEETTTTEEE---------EEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSC----SEEEE
T ss_pred EEcCCCcEEEEEcCCCCce---------eeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcE----EEEEe
Confidence 99 9999999999865433 23558999999999 8888 8999999999999999998765 33333
Q ss_pred ccCCCCccceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEE
Q 010256 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (514)
.+ ..+.++.+.+ ..++++ .++.+.+|++................ .+..++
T Consensus 169 ~~-------------~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 219 (368)
T 3mmy_A 169 LP-------------ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKH--------------QHRCVA 219 (368)
T ss_dssp CS-------------SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSS--------------CEEEEE
T ss_pred cC-------------CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccC--------------CCceEE
Confidence 32 3466666664 355554 55999999998632222222111110 122555
Q ss_pred EcCCCCE----EEEEeCCCcEEEEecCCCc--eeeeeecCCCc------------ceeEEEECCCCCceeecCCCCeEEE
Q 010256 406 LSGDGGR----VATGSYSNLFRVFGCSEGS--AESTTLEASKN------------PMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 406 ~s~~~~~----l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~------------~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+.++... +++++.||.|++|++.... .....+.+|.. +|.+++|+|++++|++++.||.|++
T Consensus 220 ~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i 299 (368)
T 3mmy_A 220 IFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF 299 (368)
T ss_dssp EEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEE
T ss_pred EcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEE
Confidence 5555544 9999999999999998763 23367777776 7999999999999999999999999
Q ss_pred eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecC
Q 010256 468 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN 507 (514)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~ 507 (514)
++-.. .........|...|.+++|+||+++|++++.+
T Consensus 300 wd~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 300 WDKDA---RTKLKTSEQLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp EETTT---TEEEEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred EECCC---CcEEEEecCCCCCceEEEECCCCCeEEEEecc
Confidence 43321 12222333578999999999999999999855
No 109
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-30 Score=245.84 Aligned_cols=250 Identities=16% Similarity=0.173 Sum_probs=197.8
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
....+.+|. +.|++++| ++++.+|++++.||.|++||+..+......
T Consensus 3 ~~~~~~~h~------------~~v~~~~~--s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------------------- 49 (379)
T 3jrp_A 3 MVVIANAHN------------ELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETHKLID------------------- 49 (379)
T ss_dssp --CCEEECC------------CCEEEEEE--CSSSSEEEEEETTSCEEEEEEETTEEEEEE-------------------
T ss_pred ccEEecCCc------------ccEEEEEE--cCCCCEEEEEECCCcEEEEecCCCcceeee-------------------
Confidence 345678888 89999999 567789999999999999999743321110
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEE
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFI 249 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~ 249 (514)
. +.+|...|.+++|+++ +++|+
T Consensus 50 -------------------------------------------------------~-~~~h~~~v~~~~~~~~~~~~~l~ 73 (379)
T 3jrp_A 50 -------------------------------------------------------T-LTGHEGPVWRVDWAHPKFGTILA 73 (379)
T ss_dssp -------------------------------------------------------E-ECCCSSCEEEEEECCGGGCSEEE
T ss_pred -------------------------------------------------------E-ecCCCCcEEEEEeCCCCCCCEEE
Confidence 0 2578899999999987 99999
Q ss_pred Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecC--CCcEEEEEecCCeEEEEEcCCCcccccccccee
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
++ .|+.|++||+++++.... ..+..|...|.+++|+|+ + .+|++++.|+.|++||++++....
T Consensus 74 s~~~dg~v~iwd~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~------- 139 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRWSQI------AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTS------- 139 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEE------EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCC-------
T ss_pred EeccCCEEEEEEcCCCceeEe------eeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCcee-------
Confidence 99 999999999986542111 145668899999999999 7 899999999999999998764321
Q ss_pred ccCCCCccceeeccccceeEEEEec-------------CCCEEEEEeC-CeEEEEEccCCCCc----eeeeeeccccccc
Q 010256 327 EQEAPGTRSFFTEIIASISDIKFAR-------------NGRHILSRDY-MTLKLWDINMDSGP----VATFQVHEHLRPK 388 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~i~~~~~s~-------------~g~~l~~~~~-~~i~iwd~~~~~~~----~~~~~~~~~~~~~ 388 (514)
...+.+|...|.+++|+| ++.++++++. +.|++||++. +.. ...+..|...
T Consensus 140 -------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~h~~~--- 208 (379)
T 3jrp_A 140 -------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-DAQTYVLESTLEGHSDW--- 208 (379)
T ss_dssp -------EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEET-TTTEEEEEEEECCCSSC---
T ss_pred -------eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecC-CCcceeeEEEEecccCc---
Confidence 112455668999999999 6899999864 9999999986 432 3344455443
Q ss_pred cccccccCCccceeeEEEcCC---CCEEEEEeCCCcEEEEecCCCce----eeeeecCCCcceeEEEECCCCCceeecCC
Q 010256 389 LCDLYENDSIFDKFECCLSGD---GGRVATGSYSNLFRVFGCSEGSA----ESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
|.+++|+|+ +++|++++.||.|++||+.++.. .......|...+.+++|+|++++|++++.
T Consensus 209 ------------v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 276 (379)
T 3jrp_A 209 ------------VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 276 (379)
T ss_dssp ------------EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES
T ss_pred ------------EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC
Confidence 459999999 89999999999999999987632 12233458899999999999999999999
Q ss_pred CCeEEE
Q 010256 462 SGVVRR 467 (514)
Q Consensus 462 d~~v~i 467 (514)
||.|++
T Consensus 277 dg~i~i 282 (379)
T 3jrp_A 277 DNKVTL 282 (379)
T ss_dssp SSSEEE
T ss_pred CCcEEE
Confidence 999999
No 110
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=8.5e-31 Score=243.99 Aligned_cols=304 Identities=14% Similarity=0.126 Sum_probs=192.0
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|++++| ++++.+|++++.||.|++||+.++.....
T Consensus 12 ~~v~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~----------------------------------------- 48 (351)
T 3f3f_A 12 DLVHDVVY--DFYGRHVATCSSDQHIKVFKLDKDTSNWE----------------------------------------- 48 (351)
T ss_dssp SCEEEEEE--CSSSSEEEEEETTSEEEEEEECSSSCCEE-----------------------------------------
T ss_pred cceeEEEE--cCCCCEEEEeeCCCeEEEEECCCCCCcce-----------------------------------------
Confidence 89999999 55778999999999999999976421000
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC--CCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
.... +.+|...|.+++|+| ++++|+++ .|+.|++||++.+.....
T Consensus 49 -------------------------------~~~~-~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~ 96 (351)
T 3f3f_A 49 -------------------------------LSDS-WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS 96 (351)
T ss_dssp -------------------------------EEEE-EECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS
T ss_pred -------------------------------ecce-eccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc
Confidence 0001 257889999999999 69999999 999999999986532100
Q ss_pred eecc-CCCcccccCCceEEEEEecC--CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCC-Cccceeecccccee
Q 010256 270 IVDV-KPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP-GTRSFFTEIIASIS 345 (514)
Q Consensus 270 ~~~~-~~~~~~~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~ 345 (514)
.... ....+..|...|.+++|+|+ + .+|++++.||.|++||+++++... .+...... ........|...+.
T Consensus 97 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 171 (351)
T 3f3f_A 97 GRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLR----SWTLTSEMKVLSIPPANHLQSDF 171 (351)
T ss_dssp SCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTT----CCEEEEEEESCSCCCSSCSCCCE
T ss_pred ccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhc----cccccccccccccccCCccccee
Confidence 0000 00145678999999999999 8 899999999999999999877532 22211000 00011235667899
Q ss_pred EEEEecC---CCEEEEEeC-CeEEEEEccCCCCc--eeeeeeccccccccccccccCCccceeeEEEcCCC----CEEEE
Q 010256 346 DIKFARN---GRHILSRDY-MTLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG----GRVAT 415 (514)
Q Consensus 346 ~~~~s~~---g~~l~~~~~-~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~s 415 (514)
+++|+|+ +.++++++. +.+.+|+... ++. +..+..|... |.+++|+|++ ++|++
T Consensus 172 ~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~---------------i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 172 CLSWCPSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSL---------------IRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp EEEECCCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSC---------------EEEEEECCCSSCSSEEEEE
T ss_pred EEEeccCCCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCcc---------------eeEEEECCCCCCcceEEEE
Confidence 9999997 889998765 7776666654 443 4555555543 4599999998 89999
Q ss_pred EeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE-eeCCCCCccccCCcccccccceEEEEE
Q 010256 416 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAW 494 (514)
Q Consensus 416 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i-~~~~~~~~~~~~~~~~~~~~~v~~~~~ 494 (514)
++.||.|++||+..+... .....+..........+....++.+..++.... ..-+.............|...|++++|
T Consensus 236 ~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 314 (351)
T 3f3f_A 236 GCKDGRIRIFKITEKLSP-LASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW 314 (351)
T ss_dssp EETTSCEEEEEEEECC----------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred EcCCCeEEEEeCCCCcCc-cccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence 999999999999876333 223333333444444555555555544433222 111111111122223358899999999
Q ss_pred cCCCCEEEEEe-cCcEEEEe
Q 010256 495 HPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 495 spd~~~l~~~~-~~~~~i~~ 513 (514)
+|++++|++++ ++.+.+|.
T Consensus 315 s~~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 315 NLTGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp CSSSCCEEEEETTSCEEEEE
T ss_pred cCCCCEEEEecCCCcEEEEe
Confidence 99999999888 55688886
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.9e-31 Score=252.07 Aligned_cols=280 Identities=13% Similarity=0.124 Sum_probs=206.3
Q ss_pred cCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCC
Q 010256 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 276 (514)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (514)
++++.+|.|++|+ +...... ...... +.+|...|.+++|+| ++++|++| .||+|++||+.+.+..... .....
T Consensus 51 ~~~~~~g~i~v~~-~~~~~~~--~~~~~~-~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~-~~~~~ 125 (402)
T 2aq5_A 51 CEASGGGAFLVLP-LGKTGRV--DKNVPL-VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL-REPVI 125 (402)
T ss_dssp BCCSSSCCEEEEE-TTCCEEC--CTTCCC-BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB-CSCSE
T ss_pred EEEcCCCEEEEEE-CccCCCC--CCCCce-EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc-CCceE
Confidence 5688999999999 3222111 112222 378999999999999 89999999 9999999999866321100 00012
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEE
Q 010256 277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (514)
Q Consensus 277 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 356 (514)
.+.+|...|.+++|+|++.++|++++.|+.|++||+++++.. ..+. ..+|...|.+++|+|++++|
T Consensus 126 ~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~----------~~~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 126 TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV----LTLG----------PDVHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp EEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE----EEEC----------TTTCCSCEEEEEECTTSSCE
T ss_pred EecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc----EEEe----------cCCCCCceEEEEECCCCCEE
Confidence 567899999999999997569999999999999999987652 2220 03466889999999999999
Q ss_pred EEEe-CCeEEEEEccCCCCceeee-eeccccccccccccccCCccceeeEEEcCCCCEEEEE---eCCCcEEEEecCCCc
Q 010256 357 LSRD-YMTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG---SYSNLFRVFGCSEGS 431 (514)
Q Consensus 357 ~~~~-~~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~---~~dg~i~iwd~~~~~ 431 (514)
++++ |+.|++||++. ++.+..+ ..|.... +..++|+|++++|++| +.|+.|++||+.++.
T Consensus 192 ~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 192 CTSCRDKRVRVIEPRK-GTVVAEKDRPHEGTR--------------PVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEETTSEEEEEETTT-TEEEEEEECSSCSSS--------------CCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred EEEecCCcEEEEeCCC-CceeeeeccCCCCCc--------------ceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence 9976 59999999997 7777777 5665431 2389999999999999 799999999998865
Q ss_pred eeeeeec-CCCcceeEEEECCCCCcee-ecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcE
Q 010256 432 AESTTLE-ASKNPMRRQVQTPSRPSRP-LGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSL 509 (514)
Q Consensus 432 ~~~~~~~-~~~~~v~~~~~~~~~~~l~-s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~ 509 (514)
....... .|...+..++|+|++++|+ +++.|+.|++++-............+.+...|.+++|+|++.+++++ ++.+
T Consensus 257 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~-~~~~ 335 (402)
T 2aq5_A 257 EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK-CEIA 335 (402)
T ss_dssp SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG-TEEE
T ss_pred CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceec-ceeE
Confidence 5333333 5778899999999999986 56689999993322111000011112356899999999999988753 4467
Q ss_pred EEEe
Q 010256 510 YMYY 513 (514)
Q Consensus 510 ~i~~ 513 (514)
.+|.
T Consensus 336 ~~~~ 339 (402)
T 2aq5_A 336 RFYK 339 (402)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 112
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.2e-31 Score=251.42 Aligned_cols=259 Identities=10% Similarity=0.102 Sum_probs=163.1
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEec--------CCCcEEEE
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--------THCNMLAY 300 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p--------~~~~~l~~ 300 (514)
..|...+....+.+++.+|+++ .|++|++||.+++....... ...+.+|.+.|.+++|+| ++ ++|++
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~---~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las 161 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHV---LGGKSGHHNFVNDIDIADVYSADNRLAE-QVIAS 161 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEE---ECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEE
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeee---ecccCCCCCceEEEEEccccccccCCCC-CEEEE
Confidence 3455556666677788899999 99999999998654322110 125789999999999998 66 89999
Q ss_pred EecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCC-EEEEEe-CCeEEEEEccCCCCceee
Q 010256 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRD-YMTLKLWDINMDSGPVAT 378 (514)
Q Consensus 301 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~-~~~i~iwd~~~~~~~~~~ 378 (514)
|+.|++|+|||++++... . .+.+|...+.+++|+|++. +|++++ |++|++||+++ ++....
T Consensus 162 ~s~D~tv~~Wd~~~~~~~----~------------~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t-~~~~~~ 224 (393)
T 4gq1_A 162 VGDDCTLIIWRLTDEGPI----L------------AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL-NLSAEE 224 (393)
T ss_dssp EETTSEEEEEEEETTEEE----E------------EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC-CC----
T ss_pred EECCCeEEEEECCCCcee----e------------eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCC-Cccccc
Confidence 999999999999876542 1 1344557899999999875 677776 49999999987 544433
Q ss_pred eeecccccccc----------ccccccCCccceeeEEEc-CCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEE
Q 010256 379 FQVHEHLRPKL----------CDLYENDSIFDKFECCLS-GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ 447 (514)
Q Consensus 379 ~~~~~~~~~~~----------~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 447 (514)
...+....... ...........+.++.|+ +|++.|++++.|+.+++||+..+.. ...+..|...+..+
T Consensus 225 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~-~~~l~~~~~~~~~~ 303 (393)
T 4gq1_A 225 NSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND-YNEISDSTMKLGPK 303 (393)
T ss_dssp ------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------
T ss_pred ccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC-CceEeeecCccccE
Confidence 32221111000 000001111234478876 8999999999999999999987633 24444444443333
Q ss_pred EE------------------CC--CCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecC
Q 010256 448 VQ------------------TP--SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN 507 (514)
Q Consensus 448 ~~------------------~~--~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~ 507 (514)
.+ +| ++.++++|+.|+.|++.+.... ........|...|++++|||||++||+++++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~---~~~~~~~~~~~~V~svafspdG~~LA~as~~ 380 (393)
T 4gq1_A 304 NLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK---DSNSIPIQLGMPIVDFCWHQDGSHLAIATEG 380 (393)
T ss_dssp CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT---TCCEEEEECSSCEEEEEECTTSSEEEEEESS
T ss_pred EEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC---cEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 22 22 4457889999999999443221 2223345678899999999999999999999
Q ss_pred cEEEEe
Q 010256 508 SLYMYY 513 (514)
Q Consensus 508 ~~~i~~ 513 (514)
++.+|.
T Consensus 381 Gv~lvr 386 (393)
T 4gq1_A 381 SVLLTR 386 (393)
T ss_dssp EEEEEE
T ss_pred CeEEEE
Confidence 999885
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=2.8e-30 Score=247.21 Aligned_cols=269 Identities=17% Similarity=0.249 Sum_probs=199.6
Q ss_pred cccccccceEEEEEcCC-CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccc
Q 010256 30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~-g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (514)
..+.|.+.|++++|+|+ +.+||+|+.||.|++|++.+...... ..........+.+|.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-------------~~~~~~~~~~~~~h~-------- 181 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-------------PSGECQPDLRLRGHQ-------- 181 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-------------TTCCCCCSEEEECCS--------
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-------------ccccCCCcEEecCCC--------
Confidence 35689999999999997 78999999999999999975321100 001123455677887
Q ss_pred cccccceeEEEEeeCCCCc-EEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 109 LEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
..|.+++|+ +++. +|++++.||.|++|++..+.....
T Consensus 182 ----~~v~~l~~~--~~~~~~l~s~~~dg~i~vwd~~~~~~~~~------------------------------------ 219 (430)
T 2xyi_A 182 ----KEGYGLSWN--PNLNGYLLSASDDHTICLWDINATPKEHR------------------------------------ 219 (430)
T ss_dssp ----SCCCCEEEC--TTSTTEEEEECTTSCEEEEETTSCCBGGG------------------------------------
T ss_pred ----CCeEEEEeC--CCCCCeEEEEeCCCeEEEEeCCCCCCCCc------------------------------------
Confidence 889999995 4555 999999999999999986421000
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCCC
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISN 265 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~ 265 (514)
. ...... ..+|...|.+++|+| ++.+|+++ .|+.|++||+++..
T Consensus 220 ------------------~---------------~~~~~~-~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~ 265 (430)
T 2xyi_A 220 ------------------V---------------IDAKNI-FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN 265 (430)
T ss_dssp ------------------E---------------EECSEE-ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC
T ss_pred ------------------e---------------ecccee-ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 0 000011 257889999999999 67888898 99999999999653
Q ss_pred ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccccee
Q 010256 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (514)
....+ ..+..|...|++++|+|++..+|++|+.||.|++||+++.... +. .+..|...|.
T Consensus 266 ~~~~~-----~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~---~~------------~~~~h~~~v~ 325 (430)
T 2xyi_A 266 TSKPS-----HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---LH------------SFESHKDEIF 325 (430)
T ss_dssp SSSCS-----EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---SE------------EEECCSSCEE
T ss_pred CCcce-----eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC---eE------------EeecCCCCEE
Confidence 11111 1345788999999999998568999999999999999874321 22 2445668999
Q ss_pred EEEEecCCC-EEEEEe-CCeEEEEEccCCC-------------CceeeeeeccccccccccccccCCccceeeEEEcCCC
Q 010256 346 DIKFARNGR-HILSRD-YMTLKLWDINMDS-------------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (514)
Q Consensus 346 ~~~~s~~g~-~l~~~~-~~~i~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (514)
+++|+|+++ +|++++ ++.|+|||+...+ ..+..+.+|... |.+++|+|++
T Consensus 326 ~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~~~~~p~~ 390 (430)
T 2xyi_A 326 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK---------------ISDFSWNPNE 390 (430)
T ss_dssp EEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSC---------------EEEEEECSSS
T ss_pred EEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCC---------------ceEEEECCCC
Confidence 999999996 567765 5999999998622 223333344332 4599999999
Q ss_pred C-EEEEEeCCCcEEEEecCCC
Q 010256 411 G-RVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 411 ~-~l~s~~~dg~i~iwd~~~~ 430 (514)
+ +|++++.||.|+||++...
T Consensus 391 ~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 391 PWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TTEEEEEETTSEEEEEEECHH
T ss_pred CCEEEEEECCCCEEEeEcccc
Confidence 9 8999999999999998743
No 114
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=1.2e-29 Score=242.67 Aligned_cols=262 Identities=16% Similarity=0.213 Sum_probs=198.7
Q ss_pred cccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
..+.+.|++++|+|. ++.+|++++.||.|++|++....... .+.+.
T Consensus 125 ~~h~~~v~~l~~~p~-~~~~lat~~~dg~V~vwd~~~~~~~~-----------------------------~~~~~---- 170 (430)
T 2xyi_A 125 INHEGEVNRARYMPQ-NACVIATKTPSSDVLVFDYTKHPSKP-----------------------------EPSGE---- 170 (430)
T ss_dssp EEESSCCSEEEEETT-EEEEEEEECSSSCEEEEEGGGSCSSC-----------------------------CTTCC----
T ss_pred EcCCCcEEEEEECCC-CCcEEEEECCCCcEEEEECCCccccc-----------------------------Ccccc----
Confidence 344488999999752 25689999999999999997531000 00000
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCC-EEEEe-cCCeEEEEeccCCCc
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQ 266 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~ 266 (514)
...... +.+|...|.+++|+|++. +|++| .||.|++||+.....
T Consensus 171 ---------------------------------~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 216 (430)
T 2xyi_A 171 ---------------------------------CQPDLR-LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPK 216 (430)
T ss_dssp ---------------------------------CCCSEE-EECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCB
T ss_pred ---------------------------------CCCcEE-ecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCC
Confidence 001111 267889999999999988 99999 899999999986432
Q ss_pred eeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
....+. ....+..|...|.+++|+|++..+|++++.||.|++||++++... .... .+..|...|++
T Consensus 217 ~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-~~~~------------~~~~~~~~v~~ 282 (430)
T 2xyi_A 217 EHRVID-AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-KPSH------------TVDAHTAEVNC 282 (430)
T ss_dssp GGGEEE-CSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-SCSE------------EEECCSSCEEE
T ss_pred CCceec-cceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-ccee------------EeecCCCCeEE
Confidence 211110 012456789999999999955589999999999999999976311 0011 23456689999
Q ss_pred EEEecCCC-EEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC-EEEEEeCCCcEE
Q 010256 347 IKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFR 423 (514)
Q Consensus 347 ~~~s~~g~-~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~ 423 (514)
++|+|+++ ++++|+. +.|++||++....++..+..|... |.+++|+|+++ +|++++.||.|+
T Consensus 283 i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~---------------v~~i~~sp~~~~~l~s~~~d~~i~ 347 (430)
T 2xyi_A 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE---------------IFQVQWSPHNETILASSGTDRRLH 347 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC---------------EEEEEECSSCTTEEEEEETTSCCE
T ss_pred EEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC---------------EEEEEECCCCCCEEEEEeCCCcEE
Confidence 99999987 5777764 999999999756678888877654 44999999995 699999999999
Q ss_pred EEecCCCc-------------eeeeeecCCCcceeEEEECCCCC-ceeecCCCCeEEE
Q 010256 424 VFGCSEGS-------------AESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 467 (514)
Q Consensus 424 iwd~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~v~i 467 (514)
|||+.... .....+.+|...|+.+.|+|+++ ++++++.|+.|++
T Consensus 348 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~i 405 (430)
T 2xyi_A 348 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV 405 (430)
T ss_dssp EEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred EEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEE
Confidence 99998632 34466778999999999999999 8999999999999
No 115
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.2e-29 Score=239.06 Aligned_cols=238 Identities=10% Similarity=0.083 Sum_probs=178.9
Q ss_pred ccCccCeEEEEECCCCCEE-EEe-cCCeEEEEecc--CCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC
Q 010256 230 HAHDYHINSISNNSDGETF-ISA-DDLRINLWNLE--ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 305 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l-~s~-~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg 305 (514)
.+|.+.|.+++|+|++++| +++ .|+.|++||+. +++....+ ....+...|.+++|+|++ .+|++|+.+|
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~------~~~~~~~~v~~~~~sp~~-~~l~~~~~~g 171 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR------KRFCFSKRPNAISIAEDD-TTVIIADKFG 171 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE------EEEECSSCEEEEEECTTS-SEEEEEETTS
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee------ecccCCCCceEEEEcCCC-CEEEEEeCCC
Confidence 4677899999999999996 788 89999999998 55443221 112467889999999999 8999999999
Q ss_pred eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC---CCEEEEEeC-CeEEEEEccCCCCceee-ee
Q 010256 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILSRDY-MTLKLWDINMDSGPVAT-FQ 380 (514)
Q Consensus 306 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---g~~l~~~~~-~~i~iwd~~~~~~~~~~-~~ 380 (514)
.+++|++.++....... ..+.+|...|.+++|+|+ +++|++++. +.|++||+.+ ++.+.. +.
T Consensus 172 ~v~~~~~~~~~~~~~~~------------~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~ 238 (450)
T 2vdu_B 172 DVYSIDINSIPEEKFTQ------------EPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-CFIVDKWLF 238 (450)
T ss_dssp EEEEEETTSCCCSSCCC------------CCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-TTCEEEECC
T ss_pred cEEEEecCCcccccccc------------eeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-Cceeeeeec
Confidence 99999998866421011 124567789999999999 999999865 9999999997 676666 44
Q ss_pred eccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec----------------------
Q 010256 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE---------------------- 438 (514)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------------- 438 (514)
+|... |.+++|+ ++++|++++.|+.|++||+.+++.. ..+.
T Consensus 239 ~h~~~---------------v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (450)
T 2vdu_B 239 GHKHF---------------VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNL-STFDYNSLIKPYLNDQHLAPPRFQNE 301 (450)
T ss_dssp CCSSC---------------EEEEEEC-STTEEEEEESSSEEEEEETTTCCEE-EEEECHHHHGGGCCTTSBC-------
T ss_pred CCCCc---------------eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEe-eeecchhhhhhhhhhccccccccccc
Confidence 66544 4499999 9999999999999999999988544 4443
Q ss_pred ---CCCcceeEEEECCCCCceeecC-CCCeEEEeeC--CCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 439 ---ASKNPMRRQVQTPSRPSRPLGS-LSGVVRRVKG--ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 439 ---~~~~~v~~~~~~~~~~~l~s~s-~d~~v~i~~~--~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
.....+..++++|++++|++++ .|+.|++++- ..............+ ..|.+++|+|++.++++++
T Consensus 302 ~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~ 373 (450)
T 2vdu_B 302 NNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDN 373 (450)
T ss_dssp ---CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECC
T ss_pred ccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEec
Confidence 2235688999999999999998 8999999433 111000111111123 8899999999654444444
No 116
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=2.4e-29 Score=241.43 Aligned_cols=269 Identities=17% Similarity=0.260 Sum_probs=212.4
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.++.| ++.++++|+.||.|++||+.+++....
T Consensus 134 ~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~~~----------------------------------------- 168 (435)
T 1p22_A 134 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRI----------------------------------------- 168 (435)
T ss_dssp CCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEE-----------------------------------------
T ss_pred CcEEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEEEE-----------------------------------------
Confidence 67888887 467999999999999999987653221
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+.+|...|.+++| ++++|++| .||+|++||+++++...
T Consensus 169 ------------------------------------~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~--- 207 (435)
T 1p22_A 169 ------------------------------------LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN--- 207 (435)
T ss_dssp ------------------------------------ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE---
T ss_pred ------------------------------------EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE---
Confidence 2567788999998 78899999 99999999999765443
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.+.+|...|.+++|++ ..+++|+.||.|++||++++..... ...+.+|...|.+++|
T Consensus 208 -----~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~-------------~~~~~~~~~~v~~~~~-- 264 (435)
T 1p22_A 208 -----TLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITL-------------RRVLVGHRAAVNVVDF-- 264 (435)
T ss_dssp -----EECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEE-------------EEEECCCSSCEEEEEE--
T ss_pred -----EEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCcee-------------eeEecCCCCcEEEEEe--
Confidence 4567899999999974 5899999999999999988654210 1234567789999999
Q ss_pred CCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 352 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 352 ~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
+++++++|+. +.|++||+++ ++.+..+..|... +.+++| ++++|++|+.||.|++||+.++
T Consensus 265 ~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~---------------v~~~~~--~~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 265 DDKYIVSASGDRTIKVWNTST-CEFVRTLNGHKRG---------------IACLQY--RDRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp ETTEEEEEETTSEEEEEETTT-CCEEEEEECCSSC---------------EEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred CCCEEEEEeCCCeEEEEECCc-CcEEEEEcCCCCc---------------EEEEEe--CCCEEEEEeCCCeEEEEECCCC
Confidence 6789998764 9999999997 8888888877654 336777 5789999999999999999987
Q ss_pred ceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeC---CCCCc---cccCCcccccccceEEEEEcCCCCEEEEE
Q 010256 431 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG---ADNSA---LDANGNAFDFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~---~~~~~---~~~~~~~~~~~~~v~~~~~spd~~~l~~~ 504 (514)
. ...++.+|...+.++.+ ++++|++|+.||.|++.+- ..+.. .........|...|.+++| ++++|+++
T Consensus 327 ~-~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~ 401 (435)
T 1p22_A 327 A-CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSS 401 (435)
T ss_dssp C-EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEEC
T ss_pred C-EEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEE
Confidence 4 44788999999999998 7889999999999999321 11100 0011223468899999999 78889988
Q ss_pred e-cCcEEEEe
Q 010256 505 A-SNSLYMYY 513 (514)
Q Consensus 505 ~-~~~~~i~~ 513 (514)
+ ++.+.+|+
T Consensus 402 s~Dg~i~iwd 411 (435)
T 1p22_A 402 SHDDTILIWD 411 (435)
T ss_dssp CSSSEEEEEC
T ss_pred eCCCEEEEEE
Confidence 8 66788885
No 117
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=2.7e-29 Score=242.28 Aligned_cols=274 Identities=14% Similarity=0.164 Sum_probs=190.9
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
.+.|++++| +++|.+|++|+.||.|++|++.+++......
T Consensus 28 ~~~V~~v~~--s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~-------------------------------------- 67 (447)
T 3dw8_B 28 ADIISTVEF--NHSGELLATGDKGGRVVIFQQEQENKIQSHS-------------------------------------- 67 (447)
T ss_dssp GGSEEEEEE--CSSSSEEEEEETTSEEEEEEECC-----CCC--------------------------------------
T ss_pred cCcEEEEEE--CCCCCEEEEEcCCCeEEEEEecCCCCCCccc--------------------------------------
Confidence 488999999 5678899999999999999998765211000
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCc------------cCeEEEEECCCC--CEEEEe-cCCeE
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHD------------YHINSISNNSDG--ETFISA-DDLRI 256 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~~--~~l~s~-~d~~i 256 (514)
.+..+ .... +.+|. ..|.+++|+|++ ..|+++ .|++|
T Consensus 68 ------------~~~~~---------------~~~~-~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i 119 (447)
T 3dw8_B 68 ------------RGEYN---------------VYST-FQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTI 119 (447)
T ss_dssp ------------CCCEE---------------EEEE-EECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCE
T ss_pred ------------cccee---------------Eecc-cccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeE
Confidence 00000 0001 13454 789999999998 788888 99999
Q ss_pred EEEeccCCCceeeeeccCC--------------------------------CcccccCCceEEEEEecCCCcEEEEEecC
Q 010256 257 NLWNLEISNQSFNIVDVKP--------------------------------ANMEDLTEVITSAEFHPTHCNMLAYSSSK 304 (514)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~i~~v~~~p~~~~~l~~~~~d 304 (514)
++||+.............. ....+|...|.+++|+|++ ++|++| .|
T Consensus 120 ~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d 197 (447)
T 3dw8_B 120 KLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY-ETYLSA-DD 197 (447)
T ss_dssp EEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS-SEEEEE-CS
T ss_pred EEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC-CEEEEe-CC
Confidence 9999975332110000000 0135789999999999998 899998 79
Q ss_pred CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC-CEEEEEeC-CeEEEEEccCCCCc----eee
Q 010256 305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRDY-MTLKLWDINMDSGP----VAT 378 (514)
Q Consensus 305 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~-~~i~iwd~~~~~~~----~~~ 378 (514)
+.|++||+++.... ...+... ...+.+|...|.+++|+|++ .+|++|+. +.|++||++. ++. +..
T Consensus 198 ~~i~iwd~~~~~~~---~~~~~~~-----~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~ 268 (447)
T 3dw8_B 198 LRINLWHLEITDRS---FNIVDIK-----PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-SALCDRHSKL 268 (447)
T ss_dssp SEEEEEETTEEEEE---EEEEECC-----CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-CSSSCTTCEE
T ss_pred CeEEEEECCCCCce---eeeeecc-----cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-CccccceeeE
Confidence 99999999854322 1211111 11256778899999999998 89999865 9999999997 554 567
Q ss_pred eeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcce--------------
Q 010256 379 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPM-------------- 444 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-------------- 444 (514)
+..|........ + ......|.+++|+|+|++|++++. +.|++||+.+.......+.+|...+
T Consensus 269 ~~~~~~~~~~~~--~-~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 344 (447)
T 3dw8_B 269 FEEPEDPSNRSF--F-SEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFD 344 (447)
T ss_dssp ECCC-----CCH--H-HHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGC
T ss_pred eccCCCcccccc--c-cccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccccc
Confidence 766653100000 0 000012559999999999999999 9999999987335557788875432
Q ss_pred -eEEEECCCCCceeecCCCCeEEEe
Q 010256 445 -RRQVQTPSRPSRPLGSLSGVVRRV 468 (514)
Q Consensus 445 -~~~~~~~~~~~l~s~s~d~~v~i~ 468 (514)
..++|+|++++|++++.|+.|+++
T Consensus 345 ~~~~~~s~~~~~l~s~s~dg~v~iw 369 (447)
T 3dw8_B 345 KFECCWNGSDSVVMTGSYNNFFRMF 369 (447)
T ss_dssp CCCEEECTTSSEEEEECSTTEEEEE
T ss_pred ceEEEECCCCCEEEEeccCCEEEEE
Confidence 248999999999999999999993
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.9e-28 Score=235.39 Aligned_cols=279 Identities=9% Similarity=0.116 Sum_probs=205.9
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..+.+++|+| ++.++++++.++.|++||+.+++........
T Consensus 123 ~~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~------------------------------------- 163 (433)
T 3bws_A 123 FQPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPE------------------------------------- 163 (433)
T ss_dssp SCBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCH-------------------------------------
T ss_pred CCceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcc-------------------------------------
Confidence 4467899954 6678888888999999999987644321110
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
...+|...|.+++|++++++++++ .|+.|++||+++.+...
T Consensus 164 -----------------------------------~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~--- 205 (433)
T 3bws_A 164 -----------------------------------KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA--- 205 (433)
T ss_dssp -----------------------------------HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---
T ss_pred -----------------------------------cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---
Confidence 025677889999999999999999 89999999998655443
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.+..|...+.+++|+|++..++++++.|+.|++||+++++.. ..+..+ ..+.+++|+|
T Consensus 206 -----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~----~~~~~~-------------~~~~~~~~~~ 263 (433)
T 3bws_A 206 -----TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI----RKTDKI-------------GLPRGLLLSK 263 (433)
T ss_dssp -----EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE----EECCCC-------------SEEEEEEECT
T ss_pred -----EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE----EEecCC-------------CCceEEEEcC
Confidence 334578889999999999434456668999999999887652 222221 3589999999
Q ss_pred CCCEEEEEe---------CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEE-EEEeCCCc
Q 010256 352 NGRHILSRD---------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYSNL 421 (514)
Q Consensus 352 ~g~~l~~~~---------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~ 421 (514)
+|+++++++ ++.|++||+.+ ++.+..+. +... +..++|+|+++.+ ++++.|+.
T Consensus 264 ~g~~l~~~~~~~~~~~~~dg~i~~~d~~~-~~~~~~~~-~~~~---------------~~~~~~~~~g~~l~~~~~~~~~ 326 (433)
T 3bws_A 264 DGKELYIAQFSASNQESGGGRLGIYSMDK-EKLIDTIG-PPGN---------------KRHIVSGNTENKIYVSDMCCSK 326 (433)
T ss_dssp TSSEEEEEEEESCTTCSCCEEEEEEETTT-TEEEEEEE-EEEC---------------EEEEEECSSTTEEEEEETTTTE
T ss_pred CCCEEEEEECCCCccccCCCeEEEEECCC-CcEEeecc-CCCC---------------cceEEECCCCCEEEEEecCCCE
Confidence 999988864 57999999986 65555442 2211 2379999999755 56689999
Q ss_pred EEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCC---------------CCeEEEeeCCCCCccccCCcccccc
Q 010256 422 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL---------------SGVVRRVKGADNSALDANGNAFDFS 486 (514)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~---------------d~~v~i~~~~~~~~~~~~~~~~~~~ 486 (514)
|++||+.+++. ...+. +...+..++++|+++++++++. ||.|++++..... .. ..+...
T Consensus 327 v~v~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~---~~-~~~~~~ 400 (433)
T 3bws_A 327 IEVYDLKEKKV-QKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT---VK-EFWEAG 400 (433)
T ss_dssp EEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE---EE-EEEECS
T ss_pred EEEEECCCCcE-EEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc---EE-EEecCC
Confidence 99999997643 34444 6677899999999998887766 5789984432211 11 112235
Q ss_pred cceEEEEEcCCCCEEEEEe--cCcEEEEe
Q 010256 487 MKLLHLAWHPSENSIACAA--SNSLYMYY 513 (514)
Q Consensus 487 ~~v~~~~~spd~~~l~~~~--~~~~~i~~ 513 (514)
..+.+++|+||+++|++++ ++.+.+|.
T Consensus 401 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 401 NQPTGLDVSPDNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp SSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred CCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence 6789999999999998765 78888886
No 119
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=2.8e-28 Score=230.82 Aligned_cols=278 Identities=13% Similarity=0.125 Sum_probs=205.6
Q ss_pred CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCc
Q 010256 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (514)
Q Consensus 48 ~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 127 (514)
.++++++.|+.|++||+.+++ ....+..| ..+.+++| +++++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~-----------------------~~~~~~~~-------------~~~~~~~~--s~dg~ 44 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNK-----------------------VTATIPVG-------------SNPMGAVI--SPDGT 44 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTE-----------------------EEEEEECS-------------SSEEEEEE--CTTSS
T ss_pred EEEEEcCCCCEEEEEECCCCe-----------------------EEEEeecC-------------CCcceEEE--CCCCC
Confidence 468889999999999998766 33455555 44899999 56777
Q ss_pred EE-EEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCc
Q 010256 128 LY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (514)
Q Consensus 128 ~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (514)
++ ++++.|+.|++||+.+++.......+. .+. .++|+|+++.+ ++++..++.
T Consensus 45 ~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~---------~v~-------~~~~spdg~~l-----------~~~~~~~~~ 97 (391)
T 1l0q_A 45 KVYVANAHSNDVSIIDTATNNVIATVPAGS---------SPQ-------GVAVSPDGKQV-----------YVTNMASST 97 (391)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSS---------SEE-------EEEECTTSSEE-----------EEEETTTTE
T ss_pred EEEEECCCCCeEEEEECCCCeEEEEEECCC---------Ccc-------ceEECCCCCEE-----------EEEECCCCE
Confidence 76 566799999999999998777665442 233 78999999976 134556799
Q ss_pred EEeceeeccccccccccccccccccCccCeEEEEECCCCCEE-EEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCc
Q 010256 207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 284 (514)
Q Consensus 207 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 284 (514)
|++|| +...+ .... ..+...+.+++|+|+++.| +++ .++.|++||+++++.... +. ....
T Consensus 98 v~v~d-~~~~~------~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--------~~-~~~~ 159 (391)
T 1l0q_A 98 LSVID-TTSNT------VAGT--VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT--------VS-VGRS 159 (391)
T ss_dssp EEEEE-TTTTE------EEEE--EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE--------EE-CCSS
T ss_pred EEEEE-CCCCe------EEEE--EeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE--------Ee-cCCC
Confidence 99999 33221 1122 1234568999999999987 566 799999999986554322 22 2355
Q ss_pred eEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe----
Q 010256 285 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD---- 360 (514)
Q Consensus 285 i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~---- 360 (514)
+.+++|+|++..++++++.++.|++||+++++.. ..+. +...+.+++|+|+++++++++
T Consensus 160 ~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~----~~~~-------------~~~~~~~~~~~~~g~~l~~~~~~~~ 222 (391)
T 1l0q_A 160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI----DTVK-------------VEAAPSGIAVNPEGTKAYVTNVDKY 222 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE----EEEE-------------CSSEEEEEEECTTSSEEEEEEECSS
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE----EEEe-------------cCCCccceEECCCCCEEEEEecCcC
Confidence 7999999999434477888999999999987642 2222 224688999999999888864
Q ss_pred CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEE-EEEeCCCcEEEEecCCCceeeeeecC
Q 010256 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYSNLFRVFGCSEGSAESTTLEA 439 (514)
Q Consensus 361 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~ 439 (514)
++.|++||+.+ ++.+..+..+.. +.+++|+|++++| ++++.|+.|++||+.++ .....+..
T Consensus 223 ~~~v~~~d~~~-~~~~~~~~~~~~----------------~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~~ 284 (391)
T 1l0q_A 223 FNTVSMIDTGT-NKITARIPVGPD----------------PAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMAV 284 (391)
T ss_dssp CCEEEEEETTT-TEEEEEEECCSS----------------EEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEEC
T ss_pred CCcEEEEECCC-CeEEEEEecCCC----------------ccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEEC
Confidence 49999999987 777777765543 2379999999987 57788999999999987 44466666
Q ss_pred CCcc
Q 010256 440 SKNP 443 (514)
Q Consensus 440 ~~~~ 443 (514)
+..+
T Consensus 285 ~~~~ 288 (391)
T 1l0q_A 285 GKNP 288 (391)
T ss_dssp SSSE
T ss_pred CcCC
Confidence 6554
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.2e-29 Score=254.60 Aligned_cols=248 Identities=16% Similarity=0.175 Sum_probs=195.7
Q ss_pred eeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccC
Q 010256 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (514)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (514)
.+.+|. +.|++++| ++++.+|++++.||.|++||+.++......
T Consensus 4 ~l~gH~------------~~V~~l~~--s~dg~~latg~~dg~I~vwd~~~~~~~~~~---------------------- 47 (753)
T 3jro_A 4 IANAHN------------ELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETHKLID---------------------- 47 (753)
T ss_dssp ----CC------------CCEEEECC--CSSSCCEEEEETTTEEEEEEEETTEEEEEE----------------------
T ss_pred ecccCc------------ceeEEEEE--CCCCCeEEEEECCCcEEEEecCCCCCccce----------------------
Confidence 467887 89999999 567779999999999999998744321110
Q ss_pred CceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-
Q 010256 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA- 251 (514)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~- 251 (514)
. +.+|.+.|.+++|+|+ +++|++|
T Consensus 48 ----------------------------------------------------~-l~~h~~~V~~l~~s~~~~~~~l~s~s 74 (753)
T 3jro_A 48 ----------------------------------------------------T-LTGHEGPVWRVDWAHPKFGTILASCS 74 (753)
T ss_dssp ----------------------------------------------------E-ECCCSSCEEEEEECCTTSCSEEEEEE
T ss_pred ----------------------------------------------------e-ccCCcCceEEEEecCCCCCCEEEEEe
Confidence 1 2578899999999988 9999999
Q ss_pred cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecC--CCcEEEEEecCCeEEEEEcCCCccccccccceeccC
Q 010256 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (514)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 329 (514)
.||.|++||+++++.... ..+..|...|.+++|+|+ + ..+++|+.||.|++||++++....
T Consensus 75 ~Dg~I~vwd~~~~~~~~~------~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~---------- 137 (753)
T 3jro_A 75 YDGKVLIWKEENGRWSQI------AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTS---------- 137 (753)
T ss_dssp TTSCEEEEEEETTEEEEE------EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCC----------
T ss_pred CCCeEEEEECCCCccccc------ccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcc----------
Confidence 999999999986542111 145678999999999999 7 899999999999999998864321
Q ss_pred CCCccceeeccccceeEEEEec-------------CCCEEEEEe-CCeEEEEEccCCC---Cceeeeeeccccccccccc
Q 010256 330 APGTRSFFTEIIASISDIKFAR-------------NGRHILSRD-YMTLKLWDINMDS---GPVATFQVHEHLRPKLCDL 392 (514)
Q Consensus 330 ~~~~~~~~~~~~~~i~~~~~s~-------------~g~~l~~~~-~~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~ 392 (514)
...+.+|...|.+++|+| ++.++++|+ +|.|++||++... .....+..|...
T Consensus 138 ----~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~------- 206 (753)
T 3jro_A 138 ----PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW------- 206 (753)
T ss_dssp ----CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC-------
T ss_pred ----eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc-------
Confidence 112455668999999999 588999876 4999999998722 233455555543
Q ss_pred cccCCccceeeEEEcCC---CCEEEEEeCCCcEEEEecCCCce----eeeeecCCCcceeEEEECCCCCceeecCCCCeE
Q 010256 393 YENDSIFDKFECCLSGD---GGRVATGSYSNLFRVFGCSEGSA----ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVV 465 (514)
Q Consensus 393 ~~~~~~~~v~~~~~s~~---~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v 465 (514)
|.+++|+|+ +++|++++.||.|++||+.++.. .......|...+.+++|+|+++++++++.||.|
T Consensus 207 --------V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I 278 (753)
T 3jro_A 207 --------VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV 278 (753)
T ss_dssp --------EEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCE
T ss_pred --------EEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEE
Confidence 459999999 89999999999999999987632 223345688999999999999999999999999
Q ss_pred EE
Q 010256 466 RR 467 (514)
Q Consensus 466 ~i 467 (514)
++
T Consensus 279 ~v 280 (753)
T 3jro_A 279 TL 280 (753)
T ss_dssp EC
T ss_pred EE
Confidence 99
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2e-27 Score=228.14 Aligned_cols=280 Identities=9% Similarity=0.047 Sum_probs=210.0
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
.....+.+++|+|++.++++++.++.|++||+.+++.... .....+.+|.
T Consensus 120 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------~~~~~~~~~~------------ 169 (433)
T 3bws_A 120 KTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRL------------------SPPEKYKKKL------------ 169 (433)
T ss_dssp ECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEE------------------CCCHHHHTTC------------
T ss_pred cCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeee------------------cCcccccccC------------
Confidence 4456677999999888888888999999999987764200 0001345666
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.+++| ++++.++++++.|+.|++||+.+++.....
T Consensus 170 ~~v~~~~~--~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~---------------------------------------- 207 (433)
T 3bws_A 170 GFVETISI--PEHNELWVSQMQANAVHVFDLKTLAYKATV---------------------------------------- 207 (433)
T ss_dssp CEEEEEEE--GGGTEEEEEEGGGTEEEEEETTTCCEEEEE----------------------------------------
T ss_pred CceeEEEE--cCCCEEEEEECCCCEEEEEECCCceEEEEE----------------------------------------
Confidence 78999999 567789999999999999999876533221
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE-Ee-cCCeEEEEeccCCCceeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
..|...+.+++|+|+++.++ ++ .++.|++||+++++....
T Consensus 208 -------------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~- 249 (433)
T 3bws_A 208 -------------------------------------DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK- 249 (433)
T ss_dssp -------------------------------------ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE-
T ss_pred -------------------------------------cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE-
Confidence 24556788999999999885 55 799999999986544321
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEe--------cCCeEEEEEcCCCccccccccceeccCCCCccceeecccc
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~--------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
+. ....+.+++|+|++ +.+++++ .|+.|++||+++++.. .. ..|..
T Consensus 250 -------~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~----~~-------------~~~~~ 303 (433)
T 3bws_A 250 -------TD-KIGLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLI----DT-------------IGPPG 303 (433)
T ss_dssp -------CC-CCSEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEE----EE-------------EEEEE
T ss_pred -------ec-CCCCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEE----ee-------------ccCCC
Confidence 22 24458999999999 7888777 4889999999887642 11 12335
Q ss_pred ceeEEEEecCCCEEEE-Ee-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC--
Q 010256 343 SISDIKFARNGRHILS-RD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-- 418 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~-~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-- 418 (514)
.+.+++|+|+++.++. +. ++.|++||+.+ ++.+..+..... +.+++|+|+|++|++++.
T Consensus 304 ~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~-~~~~~~~~~~~~----------------~~~~~~s~dg~~l~~~~~~~ 366 (433)
T 3bws_A 304 NKRHIVSGNTENKIYVSDMCCSKIEVYDLKE-KKVQKSIPVFDK----------------PNTIALSPDGKYLYVSCRGP 366 (433)
T ss_dssp CEEEEEECSSTTEEEEEETTTTEEEEEETTT-TEEEEEEECSSS----------------EEEEEECTTSSEEEEEECCC
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEECCC-CcEEEEecCCCC----------------CCeEEEcCCCCEEEEEecCC
Confidence 7889999999986654 44 49999999986 666666542221 338999999999888776
Q ss_pred -------------CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecC-CCCeEEE
Q 010256 419 -------------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS-LSGVVRR 467 (514)
Q Consensus 419 -------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s-~d~~v~i 467 (514)
||.|++||+.+++. ...+.. ...+..++|+|++++|++++ .|+.|++
T Consensus 367 ~~~~~~~~~~g~~dg~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 367 NHPTEGYLKKGLVLGKVYVIDTTTDTV-KEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRV 427 (433)
T ss_dssp CCTTTCTTSCCSSCCEEEEEETTTTEE-EEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEE
T ss_pred CccccccccccccceEEEEEECCCCcE-EEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEE
Confidence 57999999988743 355555 45788999999999998776 4999998
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=6.9e-27 Score=217.41 Aligned_cols=226 Identities=10% Similarity=0.070 Sum_probs=159.3
Q ss_pred eEEEEECCCCCEEE-Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 236 INSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 236 v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
+..+++.++++.++ ++ .|++|++||+.+++....+ . +...|.++.|+++. ++++ .|+.|++||+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~--------~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~ 127 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRI--------K-VDAPVKDLFLSREF---IVVS-YGDVISVFKFG 127 (355)
T ss_dssp CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEE--------E-CSSCEEEEEECSSE---EEEE-ETTEEEEEESS
T ss_pred eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEE--------E-CCCceEEEEEcCCE---EEEE-EcCEEEEEECC
Confidence 55677788877774 45 7899999999876554322 2 56689999999864 3333 47899999998
Q ss_pred CC-ccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE--Ee-CCeEEEEEccCCCC---------------
Q 010256 314 QS-ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS--RD-YMTLKLWDINMDSG--------------- 374 (514)
Q Consensus 314 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~--~~-~~~i~iwd~~~~~~--------------- 374 (514)
++ +.. ..+.. +...+++++ .+++. |+ +|.|++||+.. +.
T Consensus 128 ~~~~~~----~~~~~---------------~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~-~~~~~~~~~~~~~~~~~ 185 (355)
T 3vu4_A 128 NPWKRI----TDDIR---------------FGGVCEFSN--GLLVYSNEFNLGQIHITKLQS-SGSATTQDQGVQQKAIL 185 (355)
T ss_dssp TTCCBS----SCCEE---------------EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------
T ss_pred CCceee----EEecc---------------CCceEEEEc--cEEEEeCCCcCcEEEEEECCC-CCccccccccccccccC
Confidence 87 432 22221 233456676 56665 34 49999999986 33
Q ss_pred c-eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCc-EEEEecCCCceeeeeec-C-CCcceeEEEEC
Q 010256 375 P-VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL-FRVFGCSEGSAESTTLE-A-SKNPMRRQVQT 450 (514)
Q Consensus 375 ~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~-~-~~~~v~~~~~~ 450 (514)
+ +..+.+|... |.+++|+|+|++|++|+.|++ |++||+.+++.. .++. + |..+|.+++|+
T Consensus 186 p~~~~~~~h~~~---------------v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~-~~~~~g~h~~~v~~~~~s 249 (355)
T 3vu4_A 186 GKGVLIKAHTNP---------------IKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV-REFRRGLDRADVVDMKWS 249 (355)
T ss_dssp -CCEEECCCSSC---------------EEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE-EEEECTTCCSCEEEEEEC
T ss_pred cccEEEEccCCc---------------eEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE-EEEEcCCCCCcEEEEEEC
Confidence 2 5667777654 459999999999999999998 999999988554 5666 5 99999999999
Q ss_pred CCCCceeecCCCCeEEEeeCCCCCc---cccCC----cc-----------c--ccccceEEEEEcCCCCEEEEEecCc-E
Q 010256 451 PSRPSRPLGSLSGVVRRVKGADNSA---LDANG----NA-----------F--DFSMKLLHLAWHPSENSIACAASNS-L 509 (514)
Q Consensus 451 ~~~~~l~s~s~d~~v~i~~~~~~~~---~~~~~----~~-----------~--~~~~~v~~~~~spd~~~l~~~~~~~-~ 509 (514)
|++++|++++.|++|++.+-..... ..+.. .. + ........++|+||+++|++++.++ +
T Consensus 250 ~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~ 329 (355)
T 3vu4_A 250 TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMI 329 (355)
T ss_dssp TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEE
T ss_pred CCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeE
Confidence 9999999999999999933221110 00000 00 0 1122346799999999999888554 4
Q ss_pred EEE
Q 010256 510 YMY 512 (514)
Q Consensus 510 ~i~ 512 (514)
.+|
T Consensus 330 ~~~ 332 (355)
T 3vu4_A 330 ETF 332 (355)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.4e-27 Score=209.72 Aligned_cols=274 Identities=13% Similarity=0.117 Sum_probs=176.1
Q ss_pred ceEEEEEcCCCC---eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCC-Ccccc-------
Q 010256 37 IISAIEFDKSGD---HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE-PEFDY------- 105 (514)
Q Consensus 37 ~V~~~~~s~~g~---~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~~~~------- 105 (514)
.+.++.|-.-|- -+++++. ..|++|+..++. ..+...++++|+ |.+..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~--------------------~~~~~~~~~~~~~~v~~~~~~~~~~ 99 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAW--------------------QWEKLYTWHFAEVPVLQIVPVPDVY 99 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSS--------------------BEEEEEEEECCSSCEEEECCCTTCC
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCc--------------------cceeeEEEeccCceeEEEEEcCccc
Confidence 567777766443 5666664 579999998762 112334444444 11110
Q ss_pred ------ccccccccceeEEEEeeCCC----CcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCC
Q 010256 106 ------LKSLEIEEKINKIRWCQSAN----SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAI 175 (514)
Q Consensus 106 ------~~~~~~~~~v~~i~~~~~~~----~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (514)
+-+++. ..|+.+++ +++ ++++++++. .+++|++.+++....
T Consensus 100 ~~~~~~~~~~~~-~~v~sla~--spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~s------------------------ 150 (356)
T 2w18_A 100 NLVCVALGNLEI-REIRALFC--SSDDESEKQVLLKSGN--IKAVLGLTKRRLVSS------------------------ 150 (356)
T ss_dssp SCEEEEECSSSE-EEEEEECC--------CCEEEEEEEE--EEEEEEETTTEEEEE------------------------
T ss_pred ceeeeeeccccc-cceEEEEE--CCCccccccEEEeCCC--eEEEEecCCCcEEEe------------------------
Confidence 001111 56888888 456 778888774 488898877664332
Q ss_pred ceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC---CCCEEEEe-
Q 010256 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISA- 251 (514)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~- 251 (514)
...+.++.|++|+ +... ++.... +.+|...+..++|++ ++.+|+++
T Consensus 151 -----------------------s~~g~d~~V~~~~-~s~d-----G~~~~s-~~~~~~~v~~l~fs~~~g~~~~LaSgS 200 (356)
T 2w18_A 151 -----------------------SGTLSDQQVEVMT-FAED-----GGGKEN-QFLMPPEETILTFAEVQGMQEALLGTT 200 (356)
T ss_dssp -----------------------ESSSTTCEEEEEE-ECTT-----SCEEEE-EEECCCSSCEEEEEEEETSTTEEEEEE
T ss_pred -----------------------cccCCCCcEEEEE-ECCC-----Cceeee-eccCCCceeeEEeeccCCCCceEEEec
Confidence 1123567777777 3211 111111 257888899999999 78999998
Q ss_pred cCCeEEEEeccCCCceeeeeccCCCccccc---CCceEEEEEecCCCcEE------------EEEecCCeEEEEEcCCCc
Q 010256 252 DDLRINLWNLEISNQSFNIVDVKPANMEDL---TEVITSAEFHPTHCNML------------AYSSSKGSIRLIDMRQSA 316 (514)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~i~~v~~~p~~~~~l------------~~~~~dg~i~~wd~~~~~ 316 (514)
.|++|++||+++++.... +.+| ...+.+++|+|++ .++ ++|+.|++|++||..+++
T Consensus 201 ~D~TIkIWDl~TGk~l~t--------L~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk 271 (356)
T 2w18_A 201 IMNNIVIWNLKTGQLLKK--------MHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTL 271 (356)
T ss_dssp TTSEEEEEETTTCCEEEE--------EECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTE
T ss_pred CCCcEEEEECCCCcEEEE--------EcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence 999999999998765543 3332 3467888999998 665 668889999999999887
Q ss_pred cccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeecccccccccccccc
Q 010256 317 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEN 395 (514)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (514)
... .+... ...+|...+.+..++ +.++++++ |++|+|||+.+ ++.+.++.+|....
T Consensus 272 ~l~----v~~~~-------~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~v--------- 328 (356)
T 2w18_A 272 SVG----VMLYC-------LPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLL-GQCTALLPPVSDQH--------- 328 (356)
T ss_dssp EEE----EEEEC-------CCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTT-CSEEEEECCC--CC---------
T ss_pred EEE----EEEee-------ccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCC-CcEEEEecCCCCCe---------
Confidence 532 11100 002343444444444 88899986 59999999998 99999998886532
Q ss_pred CCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 396 DSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 396 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
+..++|+|||++|++|+.|++|+|||+
T Consensus 329 -----vs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 329 -----WSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -----CCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred -----EEEEEECCCCCEEEEEECCCcEEEecC
Confidence 115899999999999999999999995
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2e-27 Score=210.28 Aligned_cols=194 Identities=11% Similarity=0.039 Sum_probs=140.0
Q ss_pred cCccCeEEEEECCCCCEEEEe---cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEec---CCCcEEEEEecC
Q 010256 231 AHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP---THCNMLAYSSSK 304 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p---~~~~~l~~~~~d 304 (514)
+|...|.++ ++++.+.++ .|+.|++|++...++... ++..|...++.++|+| ++ .+|++++.|
T Consensus 134 g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~-------s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D 202 (356)
T 2w18_A 134 GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKE-------NQFLMPPEETILTFAEVQGMQ-EALLGTTIM 202 (356)
T ss_dssp EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEE-------EEEECCCSSCEEEEEEEETST-TEEEEEETT
T ss_pred CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceee-------eeccCCCceeeEEeeccCCCC-ceEEEecCC
Confidence 344444444 566666664 499999999964443322 3456888888889988 66 899999999
Q ss_pred CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEE------------EEe-CCeEEEEEccC
Q 010256 305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL------------SRD-YMTLKLWDINM 371 (514)
Q Consensus 305 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~------------~~~-~~~i~iwd~~~ 371 (514)
++|+|||+++++. ++++..+.. +...+.+++|+|+|++++ +|+ |++|++||..+
T Consensus 203 ~TIkIWDl~TGk~----l~tL~g~~~---------~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 203 NNIVIWNLKTGQL----LKKMHIDDS---------YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp SEEEEEETTTCCE----EEEEECCC------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred CcEEEEECCCCcE----EEEEcCCCc---------ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 9999999999986 444443211 124688889999999874 454 48999999987
Q ss_pred CCCceeeee-----eccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCccee-
Q 010256 372 DSGPVATFQ-----VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR- 445 (514)
Q Consensus 372 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~- 445 (514)
++.+..+. +|... .+..+.++.++++++.|++|+|||+.+++. ..++++|...+.
T Consensus 270 -gk~l~v~~~~~p~Gh~~~-----------------~lsg~~sg~~lASgS~DgTIkIWDl~tGk~-l~tL~gH~~~vvs 330 (356)
T 2w18_A 270 -TLSVGVMLYCLPPGQAGR-----------------FLEGDVKDHCAAAILTSGTIAIWDLLLGQC-TALLPPVSDQHWS 330 (356)
T ss_dssp -TEEEEEEEECCCTTCCCC-----------------EEEEEEETTEEEEEETTSCEEEEETTTCSE-EEEECCC--CCCC
T ss_pred -CEEEEEEEeeccCCCcce-----------------eEccccCCCEEEEEcCCCcEEEEECCCCcE-EEEecCCCCCeEE
Confidence 76665542 22211 122333488999999999999999999854 478999987655
Q ss_pred EEEECCCCCceeecCCCCeEEE
Q 010256 446 RQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 446 ~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.++|+|++++|++|+.|++|++
T Consensus 331 ~vafSPDG~~LaSGS~D~TIkl 352 (356)
T 2w18_A 331 FVKWSGTDSHLLAGQKDGNIFV 352 (356)
T ss_dssp EEEECSSSSEEEEECTTSCEEE
T ss_pred EEEECCCCCEEEEEECCCcEEE
Confidence 5899999999999999999999
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.2e-28 Score=224.31 Aligned_cols=188 Identities=10% Similarity=0.046 Sum_probs=134.4
Q ss_pred ccCCceEEEEEec--CCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEE
Q 010256 280 DLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 357 (514)
Q Consensus 280 ~~~~~i~~v~~~p--~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 357 (514)
.|...|.+++|+| ++ ++|++++.||.|++||+++++.. ..+. ..|...+.+++|+|+|.+|+
T Consensus 123 ~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~----~~~~-----------~~~~~~i~~~~~~pdg~~la 186 (343)
T 3lrv_A 123 DSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQY----IVHS-----------AKSDVEYSSGVLHKDSLLLA 186 (343)
T ss_dssp CCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEE----EEEC-----------CCSSCCCCEEEECTTSCEEE
T ss_pred CCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEE----EEEe-----------cCCCCceEEEEECCCCCEEE
Confidence 4668899999999 98 89999999999999999987652 1111 12335799999999999999
Q ss_pred EEe-CCeEEEEEccCCCCce-eeeee-ccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceee
Q 010256 358 SRD-YMTLKLWDINMDSGPV-ATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 434 (514)
Q Consensus 358 ~~~-~~~i~iwd~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 434 (514)
+|+ |+.|++||+++ ++.+ ..+.. |... |.+++|+|+|.+|++++. +.|++||+.++....
T Consensus 187 sg~~dg~i~iwd~~~-~~~~~~~~~~~h~~~---------------v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~ 249 (343)
T 3lrv_A 187 LYSPDGILDVYNLSS-PDQASSRFPVDEEAK---------------IKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTL 249 (343)
T ss_dssp EECTTSCEEEEESSC-TTSCCEECCCCTTSC---------------EEEEEECTTSSEEEEEES-SBEEEEETTSSTTCB
T ss_pred EEcCCCEEEEEECCC-CCCCccEEeccCCCC---------------EEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcce
Confidence 976 49999999997 6655 67766 6544 459999999999999994 599999999874431
Q ss_pred --eeecCCCccee--EEEECCCCCceeecCC-CCeEEEeeCCCCCccccCCcccccccceEEEEEcC---CCCEEEEEec
Q 010256 435 --TTLEASKNPMR--RQVQTPSRPSRPLGSL-SGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP---SENSIACAAS 506 (514)
Q Consensus 435 --~~~~~~~~~v~--~~~~~~~~~~l~s~s~-d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---d~~~l~~~~~ 506 (514)
..+..|...+. +++|+|++++|++++. |+.+++++-..... ... ...+..++|+| +.+.|++++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 322 (343)
T 3lrv_A 250 AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK------NWT-KDEESALCLQSDTADFTDMDVVCG 322 (343)
T ss_dssp SSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC------SEE-EEEEEECCC----CCCCEEEEEEE
T ss_pred eecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc------ceE-ecCceeEecCccccccceeEEEec
Confidence 22223444554 5999999999999988 99999932211110 000 14566777887 7777776653
Q ss_pred C
Q 010256 507 N 507 (514)
Q Consensus 507 ~ 507 (514)
+
T Consensus 323 d 323 (343)
T 3lrv_A 323 D 323 (343)
T ss_dssp T
T ss_pred C
Confidence 3
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=3.6e-26 Score=223.37 Aligned_cols=327 Identities=10% Similarity=0.073 Sum_probs=232.1
Q ss_pred EEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEe
Q 010256 42 EFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWC 121 (514)
Q Consensus 42 ~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~ 121 (514)
+|+|++.++++++.|++|.+||..+++. +..+..+. . +..++|
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~-----------------------~~~i~~g~------------~-~~~v~~- 186 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKI-----------------------VKVIDTGY------------A-VHISRM- 186 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEECST------------T-EEEEEE-
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceE-----------------------EEEEecCc------------c-cceEEE-
Confidence 4889999999999999999999887763 34454222 2 888999
Q ss_pred eCCCCcEEEEeeCCCeEEEEEc--CccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCccc
Q 010256 122 QSANSALYLLSTNDKTIKLWKV--QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSF 199 (514)
Q Consensus 122 ~~~~~~~l~s~~~d~~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 199 (514)
+++|+++++++.|+.|++||+ .+++......
T Consensus 187 -spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~---------------------------------------------- 219 (543)
T 1nir_A 187 -SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK---------------------------------------------- 219 (543)
T ss_dssp -CTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE----------------------------------------------
T ss_pred -CCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe----------------------------------------------
Confidence 678899999999999999999 6655332211
Q ss_pred CCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC----CCCEEEEe--cCCeEEEEeccCCCceeeeecc
Q 010256 200 PPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS----DGETFISA--DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 200 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
+...+..++|+| +|++++++ .+++|.+||..+.+.... +..
T Consensus 220 --------------------------------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~-i~~ 266 (543)
T 1nir_A 220 --------------------------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI-VST 266 (543)
T ss_dssp --------------------------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE-EEC
T ss_pred --------------------------------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccccee-ecc
Confidence 113467899999 99999888 489999999986654432 221
Q ss_pred CCCccc---cc-CCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 274 KPANME---DL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 274 ~~~~~~---~~-~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
...... -| ...+.++.++|+++.++++...++.|.+||+.+.+.+. ...+. +...+.++.|
T Consensus 267 ~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~--~~~i~-------------~~~~~~~~~~ 331 (543)
T 1nir_A 267 RGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT--VTSIG-------------AAPFLHDGGW 331 (543)
T ss_dssp CEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE--EEEEE-------------CCSSCCCEEE
T ss_pred cCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce--eEEec-------------cCcCccCceE
Confidence 110000 12 23789999999886788888889999999998765321 11111 2245778999
Q ss_pred ecCCCEEEEE-e-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEE-EcCC-CCEEEEEe-CCCcEEE
Q 010256 350 ARNGRHILSR-D-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC-LSGD-GGRVATGS-YSNLFRV 424 (514)
Q Consensus 350 s~~g~~l~~~-~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~-~~~l~s~~-~dg~i~i 424 (514)
+|+|++++++ . +++|.+||..+ ++++..+......-. .. ... ++|+ +.+++++. .|++|.+
T Consensus 332 spdg~~l~va~~~~~~v~v~D~~t-g~l~~~i~~g~~ph~--------g~-----g~~~~~p~~g~~~~s~~~~d~~V~v 397 (543)
T 1nir_A 332 DSSHRYFMTAANNSNKVAVIDSKD-RRLSALVDVGKTPHP--------GR-----GANFVHPKYGPVWSTSHLGDGSISL 397 (543)
T ss_dssp CTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSBCC--------TT-----CEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred CCCCCEEEEEecCCCeEEEEECCC-CeEEEeeccCCCCCC--------CC-----CcccCCCCCccEEEeccCCCceEEE
Confidence 9999987764 3 48999999997 777777764221100 00 122 4677 66677775 6899999
Q ss_pred EecCCC------ceeeeeecCCCcceeEEEECCCCCceeecC-------CCCeEEEeeCCCCCcc-c-cCCc----cccc
Q 010256 425 FGCSEG------SAESTTLEASKNPMRRQVQTPSRPSRPLGS-------LSGVVRRVKGADNSAL-D-ANGN----AFDF 485 (514)
Q Consensus 425 wd~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s-------~d~~v~i~~~~~~~~~-~-~~~~----~~~~ 485 (514)
||+.+. .+...++.+|...+..+.++|++++|.+++ .+++|.+++....... + +... ..++
T Consensus 398 ~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~ 477 (543)
T 1nir_A 398 IGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG 477 (543)
T ss_dssp EECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS
T ss_pred EEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC
Confidence 999872 244588889988888999999999999987 3779999554433211 1 1000 1245
Q ss_pred ccceEEEEEcCCCCEEEEEe------cCcEEEEeC
Q 010256 486 SMKLLHLAWHPSENSIACAA------SNSLYMYYA 514 (514)
Q Consensus 486 ~~~v~~~~~spd~~~l~~~~------~~~~~i~~~ 514 (514)
...+.+++|+|||+.|+++. ++.+.||..
T Consensus 478 ~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 478 AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp CCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred CCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 78999999999999999763 477888863
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=9e-27 Score=221.02 Aligned_cols=219 Identities=14% Similarity=0.107 Sum_probs=159.2
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCC---eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEE-EEecC
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDL---RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSK 304 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~-~~~~d 304 (514)
.+|...+.+++|+|+|+.|+++ .++ .|++||+++++.. .+..+...+.+++|+|+| +.|+ +++.+
T Consensus 175 ~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~---------~l~~~~~~~~~~~~spdg-~~la~~~~~~ 244 (415)
T 2hqs_A 175 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------QVASFPRHNGAPAFSPDG-SKLAFALSKT 244 (415)
T ss_dssp EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---------EEECCSSCEEEEEECTTS-SEEEEEECTT
T ss_pred eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE---------EeecCCCcccCEEEcCCC-CEEEEEEecC
Confidence 4566789999999999999988 654 9999999866542 234467789999999999 6666 66666
Q ss_pred Ce--EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--C--eEEEEEccCCCCceee
Q 010256 305 GS--IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVAT 378 (514)
Q Consensus 305 g~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~--~i~iwd~~~~~~~~~~ 378 (514)
+. |++||+.+++.. . +..|...+.+++|+|||++|+.+++ + .|.+||+.. ++ ...
T Consensus 245 g~~~i~~~d~~~~~~~-----~------------l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~~-~~~ 305 (415)
T 2hqs_A 245 GSLNLYVMDLASGQIR-----Q------------VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-GA-PQR 305 (415)
T ss_dssp SSCEEEEEETTTCCEE-----E------------CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SC-CEE
T ss_pred CCceEEEEECCCCCEE-----e------------CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-CC-EEE
Confidence 54 999999876531 1 2334467999999999999887653 4 677788875 43 333
Q ss_pred eeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCc
Q 010256 379 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS 455 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 455 (514)
+..+... +.+++|+|||++|++++.+ ..|++||+.+++. ..+..+. .+..+.|+|++++
T Consensus 306 l~~~~~~---------------~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~spdg~~ 367 (415)
T 2hqs_A 306 ITWEGSQ---------------NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAPNGTM 367 (415)
T ss_dssp CCCSSSE---------------EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECTTSSE
T ss_pred EecCCCc---------------ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcCCCCE
Confidence 3333222 3379999999999988764 5899999998754 3455554 8899999999999
Q ss_pred eeecCCCC---eEEEeeCCCCCccccCCcccccccceEEEEEcCCCC
Q 010256 456 RPLGSLSG---VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 499 (514)
Q Consensus 456 l~s~s~d~---~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~ 499 (514)
|++++.++ .+.+++-.... ......+.+.|.+++|+|...
T Consensus 368 l~~~s~~~~~~~l~~~d~~g~~----~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 368 VIYSSSQGMGSVLNLVSTDGRF----KARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEEEETTEEEEEEEETTSCC----EEECCCSSSEEEEEEECCCCC
T ss_pred EEEEEcCCCccEEEEEECCCCc----EEEeeCCCCCCcCCccccccc
Confidence 99998877 56663321111 112234788999999999754
No 128
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=1.1e-25 Score=213.01 Aligned_cols=317 Identities=9% Similarity=0.073 Sum_probs=214.6
Q ss_pred cccccceEEEEEcCCCCeE-EEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l-~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
+.+...+.+++|+|+|++| ++++.|+.|++||+.+++. ...+..+
T Consensus 28 ~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-----------------------~~~~~~~----------- 73 (391)
T 1l0q_A 28 IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-----------------------IATVPAG----------- 73 (391)
T ss_dssp EECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-----------------------EEEEECS-----------
T ss_pred eecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-----------------------EEEEECC-----------
Confidence 3444569999999999976 6777999999999887663 2333333
Q ss_pred cccceeEEEEeeCCCCcEEEE-eeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 111 IEEKINKIRWCQSANSALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..+.+++| +++++++++ ++.++.|++||+.+++.......+. .+. .++|+|+++.+
T Consensus 74 --~~v~~~~~--spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~---------~~~-------~~~~s~dg~~l--- 130 (391)
T 1l0q_A 74 --SSPQGVAV--SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK---------SPL-------GLALSPDGKKL--- 130 (391)
T ss_dssp --SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---------SEE-------EEEECTTSSEE---
T ss_pred --CCccceEE--CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC---------Ccc-------eEEECCCCCEE---
Confidence 46999999 567777765 4567999999999998766655431 222 78999999865
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEE-EEe-cCCeEEEEeccCCCce
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~~~ 267 (514)
+++++.++.|++|| +... +....+ ..+ ..+.+++|+|+++.+ +++ .++.|++||+++.+..
T Consensus 131 --------~~~~~~~~~v~~~d-~~~~------~~~~~~-~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~ 193 (391)
T 1l0q_A 131 --------YVTNNGDKTVSVIN-TVTK------AVINTV-SVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI 193 (391)
T ss_dssp --------EEEETTTTEEEEEE-TTTT------EEEEEE-ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred --------EEEeCCCCEEEEEE-CCCC------cEEEEE-ecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE
Confidence 15677899999999 3322 122222 223 457899999999887 566 7999999999865433
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEe---cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
.. ..+...+.+++|+|++ .++++++ .++.|++||+++++.. ..+..+ ..+
T Consensus 194 ~~---------~~~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~~----~~~~~~-------------~~~ 246 (391)
T 1l0q_A 194 DT---------VKVEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKIT----ARIPVG-------------PDP 246 (391)
T ss_dssp EE---------EECSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEEE----EEEECC-------------SSE
T ss_pred EE---------EecCCCccceEECCCC-CEEEEEecCcCCCcEEEEECCCCeEE----EEEecC-------------CCc
Confidence 21 1245678999999999 7777777 6899999999887652 233222 357
Q ss_pred eEEEEecCCCEEE-EEe-CCeEEEEEccCCCCceeeeeecccccccc--ccccccCCccceeeEEEcCCC----------
Q 010256 345 SDIKFARNGRHIL-SRD-YMTLKLWDINMDSGPVATFQVHEHLRPKL--CDLYENDSIFDKFECCLSGDG---------- 410 (514)
Q Consensus 345 ~~~~~s~~g~~l~-~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~---------- 410 (514)
.+++|+|+|++++ +++ ++.|++||+.+ ++.+..+..+....... ........... ...|+.+.
T Consensus 247 ~~~~~s~dg~~l~~s~~~d~~v~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~fs~~~~~~~~~~~~~ 323 (391)
T 1l0q_A 247 AGIAVTPDGKKVYVALSFXNTVSVIDTAT-NTITATMAVGKNPYASGQFIGSIPVQPVYP--SADFKSNITSGYIFLSEP 323 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEECSSSEECCSSCEEECSSCCCCC--BCCEEESCCSSEEETTCC
T ss_pred cEEEEccCCCEEEEEcCCCCEEEEEECCC-CcEEEEEECCcCCCccceeeeccccccccc--ccccccccccccccccce
Confidence 8899999999885 554 49999999997 77777777665432100 00000011111 11222221
Q ss_pred CEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeec
Q 010256 411 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 411 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
..+...+.|...++|++..+... .+..+ ...|+++|.|.++.
T Consensus 324 ~~~~~~~~~~~~~~W~~~~g~~~-----~~~~~--~~~~~~~g~y~~~~ 365 (391)
T 1l0q_A 324 VQFTDLSKDATEWKWDFGDGSSS-----KKQNP--THTYSETGIYTVRL 365 (391)
T ss_dssp EEEEECCBSCSEEEEECSSSCEE-----CSSSC--EECCSSCEEEEEEE
T ss_pred EEEEeCCCCceEEEEECCCCccc-----CcCCC--eEEeCCCceEEEEE
Confidence 33556677889999999876431 22222 45788888876544
No 129
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=2.6e-26 Score=243.53 Aligned_cols=374 Identities=9% Similarity=0.014 Sum_probs=244.1
Q ss_pred ccccccceEEEEEcCCCCeEEEecCC------CeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRG------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD 104 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 104 (514)
...|...|.+++|||||++||+++.+ ..|++|++.+++. ..+..|.
T Consensus 48 lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~------------------------~~lt~~~---- 99 (1045)
T 1k32_A 48 IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI------------------------KRITYFS---- 99 (1045)
T ss_dssp EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE------------------------EECCCCC----
T ss_pred eeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe------------------------EEcccCC----
Confidence 34688999999999999999988643 3799999876542 3445555
Q ss_pred cccccccccce-------eEEEEeeCCCCcEEEEeeCC------CeEEEEEcCccEEEEEeeccCCCcc----cc-----
Q 010256 105 YLKSLEIEEKI-------NKIRWCQSANSALYLLSTND------KTIKLWKVQEKKVKKVFDWNVHPEK----AA----- 162 (514)
Q Consensus 105 ~~~~~~~~~~v-------~~i~~~~~~~~~~l~s~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~----~~----- 162 (514)
..+ ..++| +++|+++++++.+ ..|.+|++.+++...+......... .+
T Consensus 100 --------~~~~~~~~~~~~~~~--SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~ 169 (1045)
T 1k32_A 100 --------GKSTGRRMFTDVAGF--DPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRN 169 (1045)
T ss_dssp --------EEEETTEECSEEEEE--CTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEES
T ss_pred --------CcccccccccccccC--CCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEecc
Confidence 445 89999 5677777777644 4688888888775543322110000 00
Q ss_pred -------------CCcceec------------ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeecccc
Q 010256 163 -------------GNGPIFG------------SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQE 217 (514)
Q Consensus 163 -------------~~~~v~~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~ 217 (514)
....++. -......+.|+++ . ++++++.++.+++|. +....
T Consensus 170 ~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~------------l~~~~~~dg~~~l~~-~~~~g 235 (1045)
T 1k32_A 170 TFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-R------------IYFITDIDGFGQIYS-TDLDG 235 (1045)
T ss_dssp CSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-E------------EEEEECTTSSCEEEE-EETTS
T ss_pred CCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-E------------EEEEEeccCceEEEE-EeCCC
Confidence 0000000 0000012233333 2 235667788889888 22111
Q ss_pred ccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccC---CCcccccCCceEEEEEe-cC
Q 010256 218 TNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVK---PANMEDLTEVITSAEFH-PT 293 (514)
Q Consensus 218 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~i~~v~~~-p~ 293 (514)
. ..+. +..|. .+...+|+|+|+.|+.+.++.|++|++. ......+..-. ......|...+.+++|+ |+
T Consensus 236 ~-----~~~~-l~~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~-~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pd 307 (1045)
T 1k32_A 236 K-----DLRK-HTSFT-DYYPRHLNTDGRRILFSKGGSIYIFNPD-TEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLD 307 (1045)
T ss_dssp C-----SCEE-CCCCC-SSCEEEEEESSSCEEEEETTEEEEECTT-TCCEEECCCCCCCBCCSEEEECGGGGEEEEEECG
T ss_pred C-----cceE-ecCCC-CcceeeEcCCCCEEEEEeCCEEEEecCC-ceEeeeeccCcccccccccccccccceeeecCCC
Confidence 0 1111 13333 4567799999999999888999999984 33222110000 00111234568899999 99
Q ss_pred CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccc-ceeEEEEecCCCEEEEEeC-CeEE-EEEcc
Q 010256 294 HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA-SISDIKFARNGRHILSRDY-MTLK-LWDIN 370 (514)
Q Consensus 294 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~~~-~~i~-iwd~~ 370 (514)
| +.|++++ ++.+.+|++..+... . +..|.. .+..++|+ +|+.|+.+++ ..+. +||+.
T Consensus 308 G-~~la~~~-~~~i~~~~~~~~~~~-----~------------~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~ 367 (1045)
T 1k32_A 308 G-DLIAFVS-RGQAFIQDVSGTYVL-----K------------VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR 367 (1045)
T ss_dssp G-GCEEEEE-TTEEEEECTTSSBEE-----E------------CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT
T ss_pred C-CEEEEEE-cCEEEEEcCCCCceE-----E------------ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC
Confidence 9 7788777 889999998876531 1 122334 68999999 9999998766 7777 88987
Q ss_pred CCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEEC
Q 010256 371 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQT 450 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 450 (514)
. ++ ...+..+... +..++|+|||++|++++.++.|++||+.+++. ...+.+|...+..++|+
T Consensus 368 ~-~~-~~~l~~~~~~---------------~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~-~~~~~~~~~~v~~~~~S 429 (1045)
T 1k32_A 368 T-GK-AEKFEENLGN---------------VFAMGVDRNGKFAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTIS 429 (1045)
T ss_dssp T-CC-EEECCCCCCS---------------EEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEEC
T ss_pred C-CC-ceEecCCccc---------------eeeeEECCCCCEEEEECCCCeEEEEECCCCce-EEeccCCCCCccceEEC
Confidence 5 43 3333333222 34899999999999999999999999998743 35666898999999999
Q ss_pred CCCCceeecCCCC----------eEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEec
Q 010256 451 PSRPSRPLGSLSG----------VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS 506 (514)
Q Consensus 451 ~~~~~l~s~s~d~----------~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~ 506 (514)
||+++|++++.++ .|++++...- . ......+...+..++|+|||++|++++.
T Consensus 430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g---~-~~~l~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR---K-IFAATTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---E-EEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred CCCCeEEEEecCccccccCCCCCeEEEEECCCC---c-EEEeeCCCcccCCceEcCCCCEEEEEec
Confidence 9999999887654 7888432211 1 1122346677889999999999998774
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=7.2e-26 Score=232.52 Aligned_cols=335 Identities=8% Similarity=0.058 Sum_probs=213.7
Q ss_pred ccceEEEEEcCCCCeEEEecC-CC-----eEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDR-GG-----RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (514)
...|++++|||||++|++++. |+ .|++||+.+++.. ..+..... .|....+.. . +........
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~----~~~~~~~~----~~~~~~~~~-~--~~~~~~~~~ 104 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR----LLVDSKVV----LPGTETLSD-E--EKARRERQR 104 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE----EEECGGGT----C---------------------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee----Eccchhhc----ccccccccc-h--hhhhhhhhh
Confidence 457999999999999999998 88 8999999877632 00000000 000000000 0 000000000
Q ss_pred cccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCcc---EEEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
......|.+++| ++||++|++++. +.|++||+.++ +..
T Consensus 105 ~~~~~~v~~~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~------------------------------------ 145 (741)
T 2ecf_A 105 IAAMTGIVDYQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVR------------------------------------ 145 (741)
T ss_dssp --CCEESCCCEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCC------------------------------------
T ss_pred hccccCcceeEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEE------------------------------------
Confidence 000023677788 567778877775 78888887654 210
Q ss_pred cccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCC
Q 010256 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISN 265 (514)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~ 265 (514)
. +..|...+..++|+|||++|+.+.++.|++||+.+++
T Consensus 146 -----------------------------------------~-l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 146 -----------------------------------------Q-LTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGR 183 (741)
T ss_dssp -----------------------------------------B-CCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTE
T ss_pred -----------------------------------------E-cccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCC
Confidence 0 1345567899999999999999977799999998644
Q ss_pred ceeeeeccCCCcccccCC----------------ceEEEEEecCCCcEEEEEecCC------------------------
Q 010256 266 QSFNIVDVKPANMEDLTE----------------VITSAEFHPTHCNMLAYSSSKG------------------------ 305 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~----------------~i~~v~~~p~~~~~l~~~~~dg------------------------ 305 (514)
.. .+. ..+.. .+.+++|+||| +.|++++.|+
T Consensus 184 ~~-~~~-------~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~ 254 (741)
T 2ecf_A 184 QM-QLT-------ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP 254 (741)
T ss_dssp EE-ECC-------CCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred EE-Eec-------cCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence 32 221 11111 24789999999 7888887665
Q ss_pred ---------eEEEEEcCC-CccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe------CCeEEEEEc
Q 010256 306 ---------SIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD------YMTLKLWDI 369 (514)
Q Consensus 306 ---------~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~------~~~i~iwd~ 369 (514)
.|.+||+.+ ++.. . +... ..|...+..++| |||++|+.+. +..|++||+
T Consensus 255 ~~g~~~~~~~l~~~d~~~~~~~~----~-~~~~---------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~ 319 (741)
T 2ecf_A 255 AAGDANVQVKLGVISPAEQAQTQ----W-IDLG---------KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTL 319 (741)
T ss_dssp BTTSCCCEEEEEEECSSTTCCCE----E-ECCC---------SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEET
T ss_pred CCCCCCCeeEEEEEECCCCCceE----E-ecCC---------CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEEC
Confidence 788888877 6532 1 1100 124467999999 9999998642 268999999
Q ss_pred cCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEE-E
Q 010256 370 NMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ-V 448 (514)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-~ 448 (514)
.+ ++....+..+.... +..+..++|+|||+++++++.||.++||.+..... ...+..+...+..+ .
T Consensus 320 ~~-g~~~~~~~~~~~~~-----------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~ 386 (741)
T 2ecf_A 320 AS-NQQRVLAHETSPTW-----------VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLA 386 (741)
T ss_dssp TT-CCEEEEEEEECSSC-----------CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEE
T ss_pred CC-CceEEEEEcCCCCc-----------CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeE
Confidence 87 66666555443210 00022789999999999999999888887653223 56777787888887 5
Q ss_pred ECCCCCcee-ecCCCC--eEEE--ee--CCCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 449 QTPSRPSRP-LGSLSG--VVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 449 ~~~~~~~l~-s~s~d~--~v~i--~~--~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
|+|+++.|+ +++.++ .+++ .+ +..+. .+.....+..++||||+++|+...
T Consensus 387 ~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~-------~l~~~~~~~~~~~spdg~~l~~~~ 443 (741)
T 2ecf_A 387 VDEKAGLAYFRAGIESARESQIYAVPLQGGQPQ-------RLSKAPGMHSASFARNASVYVDSW 443 (741)
T ss_dssp EETTTTEEEEEECSSCTTCBEEEEEETTCCCCE-------ECCCSCSEEEEEECTTSSEEEEEE
T ss_pred EeCCCCEEEEEEeCCCCceEEEEEEEcCCCCee-------ecccCCCceEEEECCCCCEEEEEe
Confidence 999998765 455555 6777 22 21111 112256788999999999998654
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=3.5e-25 Score=234.93 Aligned_cols=365 Identities=10% Similarity=0.036 Sum_probs=245.9
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
.+|...+.+++|+++ .++++++.||.+.||.+..... ....+..|
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~----------------------~~~~l~~~------------ 244 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK----------------------DLRKHTSF------------ 244 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC----------------------SCEECCCC------------
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC----------------------cceEecCC------------
Confidence 468899999999998 6777888889999998764221 11223333
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeec-cCCCcccccc
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM-ANGGCGERNF 190 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~l~~~~ 190 (514)
..+..++|+ ++|++++.+ .++.|.+|++...++. .......... ............++|+ |||+.+
T Consensus 245 -~~~~~~~~S--pDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~----~~~~~~~~~v~~~~~S~pdG~~l---- 311 (1045)
T 1k32_A 245 -TDYYPRHLN--TDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESP----EDRIISIPSKFAEDFSPLDGDLI---- 311 (1045)
T ss_dssp -CSSCEEEEE--ESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBC----CSEEEECGGGGEEEEEECGGGCE----
T ss_pred -CCcceeeEc--CCCCEEEEE-eCCEEEEecCCceEee-eeccCccccc----ccccccccccceeeecCCCCCEE----
Confidence 235667885 567778777 4899999999655443 2111100000 0000000112378999 999987
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCcc-CeEEEEECCCCCEEEEe-cCCeEE-EEeccCCCce
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY-HINSISNNSDGETFISA-DDLRIN-LWNLEISNQS 267 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~-~d~~i~-iwd~~~~~~~ 267 (514)
+.+. ++.+.+|+ ..... .. . +..|.. .+..++|+ +|+.|+++ .+..+. +|++..+..
T Consensus 312 --------a~~~-~~~i~~~~-~~~~~------~~-~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~- 371 (1045)
T 1k32_A 312 --------AFVS-RGQAFIQD-VSGTY------VL-K-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA- 371 (1045)
T ss_dssp --------EEEE-TTEEEEEC-TTSSB------EE-E-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE-
T ss_pred --------EEEE-cCEEEEEc-CCCCc------eE-E-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc-
Confidence 5544 77888887 33221 11 1 245666 88999999 99999988 777888 889875432
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
. .+..+...+..++|+|+| +.|++++.++.|++||+.+++.. .. ..+|...+.++
T Consensus 372 ~--------~l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~----~~------------~~~~~~~v~~~ 426 (1045)
T 1k32_A 372 E--------KFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPT----VI------------ERSREAMITDF 426 (1045)
T ss_dssp E--------ECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EE------------EECSSSCCCCE
T ss_pred e--------EecCCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceE----Ee------------ccCCCCCccce
Confidence 2 233567889999999999 89999999999999999887642 11 22455778999
Q ss_pred EEecCCCEEEEEeC-----------CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE
Q 010256 348 KFARNGRHILSRDY-----------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 416 (514)
Q Consensus 348 ~~s~~g~~l~~~~~-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 416 (514)
+|||||++|++++. +.|++||+.. ++ +..+..+... +..++|+|||++|+++
T Consensus 427 ~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~---------------~~~~~~spdG~~l~~~ 489 (1045)
T 1k32_A 427 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-RK-IFAATTENSH---------------DYAPAFDADSKNLYYL 489 (1045)
T ss_dssp EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-TE-EEECSCSSSB---------------EEEEEECTTSCEEEEE
T ss_pred EECCCCCeEEEEecCccccccCCCCCeEEEEECCC-Cc-EEEeeCCCcc---------------cCCceEcCCCCEEEEE
Confidence 99999999987532 4899999986 44 4555444332 2378999999999999
Q ss_pred eCCCcEEEEecCCCc------------------------------------------eeeeeecCCCcceeEEEECCCCC
Q 010256 417 SYSNLFRVFGCSEGS------------------------------------------AESTTLEASKNPMRRQVQTPSRP 454 (514)
Q Consensus 417 ~~dg~i~iwd~~~~~------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~ 454 (514)
+.++...+|+..... .....+..|...+..+.++|+++
T Consensus 490 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~ 569 (1045)
T 1k32_A 490 SYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI 569 (1045)
T ss_dssp ESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEE
T ss_pred ecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCe
Confidence 987777666542211 01123345667788999999998
Q ss_pred ceee-----------cCCCC--eEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 455 SRPL-----------GSLSG--VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 455 ~l~s-----------~s~d~--~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
++++ .+.++ .+.+++..... .. .....+..++|||||+.|++++.+++.+|.
T Consensus 570 ~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~---~~----~l~~~v~~~~~S~DG~~l~~~~~~~i~~~d 634 (1045)
T 1k32_A 570 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK---VT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTF 634 (1045)
T ss_dssp EEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC---EE----EEEEEEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred EEEEecccCcccccccccCCCceEEEEECCCCc---EE----EeecCcceEEECCCCCEEEEEcCCcEEEEe
Confidence 7775 23333 44443322111 00 112668899999999999999988999986
No 132
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=6.1e-25 Score=225.06 Aligned_cols=334 Identities=11% Similarity=0.027 Sum_probs=208.2
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
..+.+++|+|||+++++ +.||.|++||+.+++.. ..+.+|... ...|
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~-----------------------~~~~~~~~~---------~~~v 63 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST-----------------------VLIEGKKIE---------SLRA 63 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE-----------------------EEECTTTTT---------TTTC
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE-----------------------EEecccccc---------cccc
Confidence 34778999999998876 68999999999887632 234444300 0148
Q ss_pred eEEEEeeCCCCcEEEEeeCC---------CeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 116 NKIRWCQSANSALYLLSTND---------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d---------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
.+++| ++||++|++++.+ +.+.+||+.+++...+..
T Consensus 64 ~~~~~--SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--------------------------------- 108 (723)
T 1xfd_A 64 IRYEI--SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP--------------------------------- 108 (723)
T ss_dssp SEEEE--CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC---------------------------------
T ss_pred ceEEE--CCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccC---------------------------------
Confidence 99999 6788899998764 677788887765311100
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCc
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQ 266 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~ 266 (514)
..+|...+..++|+|||+.|+.+.++.|++||+.+++.
T Consensus 109 ------------------------------------------~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~ 146 (723)
T 1xfd_A 109 ------------------------------------------PEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQA 146 (723)
T ss_dssp ------------------------------------------TTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCC
T ss_pred ------------------------------------------CccccccccccEECCCCCEEEEEECCeEEEEECCCCce
Confidence 12344457788999999999999668999999986543
Q ss_pred eeeeeccCCCc--cccc---------CCceEEEEEecCCCcEEEEEecCC------------------------------
Q 010256 267 SFNIVDVKPAN--MEDL---------TEVITSAEFHPTHCNMLAYSSSKG------------------------------ 305 (514)
Q Consensus 267 ~~~~~~~~~~~--~~~~---------~~~i~~v~~~p~~~~~l~~~~~dg------------------------------ 305 (514)
. .+....... +.++ ...+.+++|+||| +.|++++.++
T Consensus 147 ~-~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 224 (723)
T 1xfd_A 147 I-RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE 224 (723)
T ss_dssp E-EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC
T ss_pred E-EEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC
Confidence 2 221100000 0001 1133789999999 7888877543
Q ss_pred ----eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe----C-CeEEEEEccCCCCce
Q 010256 306 ----SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----Y-MTLKLWDINMDSGPV 376 (514)
Q Consensus 306 ----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~-~~i~iwd~~~~~~~~ 376 (514)
.|++||+.+++.. ..+..+. .+..+...+..++|||||+++++.. . ..|++||+.+ ++..
T Consensus 225 ~~~~~l~~~d~~~~~~~----~~l~~~~------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-g~~~ 293 (723)
T 1xfd_A 225 NPSISLHVIGLNGPTHD----LEMMPPD------DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCT 293 (723)
T ss_dssp CCEEEEEEEESSSSCCC----EECCCCC------CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEE
T ss_pred CCeeEEEEEECCCCcee----EEeeCCc------cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-Ccce
Confidence 6888888776531 1121110 0112346789999999999887642 2 6899999986 6655
Q ss_pred eeeeecc-ccccccccccccCCccceeeEEEcCCCCEEEE--EeCCC------cEEEEe-cCCCce-eeeeecCCCccee
Q 010256 377 ATFQVHE-HLRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSN------LFRVFG-CSEGSA-ESTTLEASKNPMR 445 (514)
Q Consensus 377 ~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~dg------~i~iwd-~~~~~~-~~~~~~~~~~~v~ 445 (514)
..+..+. ..... . ...++|+|||+.|+. +..++ .|++|| ...+.. ....+..+...+.
T Consensus 294 ~~~~~~~~~~~~~---------~--~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~ 362 (723)
T 1xfd_A 294 KKHEDESEAWLHR---------Q--NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVT 362 (723)
T ss_dssp EEEEEECSSCCCC---------C--CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEE
T ss_pred EEEEeccCCEEec---------c--CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEE
Confidence 5544332 11100 0 016899999997774 45666 577777 343320 0233443333344
Q ss_pred -EEEECCCCCceeecCCC---CeEEE--ee--CCCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 446 -RQVQTPSRPSRPLGSLS---GVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 446 -~~~~~~~~~~l~s~s~d---~~v~i--~~--~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
.+.|+|+++.|+..+.+ +.+++ ++ +.... ..+.. .+.+...+..++|+|||++|+...
T Consensus 363 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~l~~-~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 363 KILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNR-QCLSC-DLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp EEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCC-BCSST-TSSSSCCCCEEEECTTSSEEEEEC
T ss_pred eeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCc-ceecc-cccCCCCeEEEEECCCCCEEEEEc
Confidence 46899999998766544 66777 22 11011 01110 011456789999999999998654
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=6.1e-23 Score=200.54 Aligned_cols=293 Identities=11% Similarity=0.091 Sum_probs=206.9
Q ss_pred eEEEEEcCCCCeEEEecCCCeEEEEEe--cCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 38 ISAIEFDKSGDHLATGDRGGRVVLFER--TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 38 V~~~~~s~~g~~l~tg~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
+.+++|+|||++|++++.|+.|++||+ .+++ ...++..+ ..+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-----------------------~~~~i~~g-------------~~p 224 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-----------------------KVAEIKIG-------------IEA 224 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-----------------------EEEEEECC-------------SEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-----------------------EEEEEecC-------------CCc
Confidence 889999999999999999999999998 5444 22334322 557
Q ss_pred eEEEEeeCC----CCcEEEEee-CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 116 NKIRWCQSA----NSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 116 ~~i~~~~~~----~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..++| ++ +|+++++++ .+++|.+||..++++.......... .++
T Consensus 225 ~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~----------------------~~~------- 273 (543)
T 1nir_A 225 RSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT----------------------VDT------- 273 (543)
T ss_dssp EEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC----------------------SSS-------
T ss_pred ceEEe--CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcc----------------------cCc-------
Confidence 89999 56 788999887 5899999999988766554432000 000
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccC-ccCeEEEEECCCCCEEEE-e-cCCeEEEEeccCCCce
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH-DYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQS 267 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~ 267 (514)
...| ...+.++.++|++..++. . .+++|.+||..+.+..
T Consensus 274 --------------------------------------~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l 315 (543)
T 1nir_A 274 --------------------------------------QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL 315 (543)
T ss_dssp --------------------------------------CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC
T ss_pred --------------------------------------cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc
Confidence 0012 236889999998776555 4 7999999999865433
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEE-EEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
. +. .+ .+...+..+.|+|++ ++|+ ++..+++|.+||+.++++. ..++.... .|.+....
T Consensus 316 ~-~~-----~i-~~~~~~~~~~~spdg-~~l~va~~~~~~v~v~D~~tg~l~----~~i~~g~~--------ph~g~g~~ 375 (543)
T 1nir_A 316 T-VT-----SI-GAAPFLHDGGWDSSH-RYFMTAANNSNKVAVIDSKDRRLS----ALVDVGKT--------PHPGRGAN 375 (543)
T ss_dssp E-EE-----EE-ECCSSCCCEEECTTS-CEEEEEEGGGTEEEEEETTTTEEE----EEEECSSS--------BCCTTCEE
T ss_pred e-eE-----Ee-ccCcCccCceECCCC-CEEEEEecCCCeEEEEECCCCeEE----EeeccCCC--------CCCCCCcc
Confidence 2 10 11 245567889999999 6554 5556899999999998763 33332211 12222323
Q ss_pred EEEecC-CCEEEEEe--CCeEEEEEccCC------CCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe
Q 010256 347 IKFARN-GRHILSRD--YMTLKLWDINMD------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (514)
Q Consensus 347 ~~~s~~-g~~l~~~~--~~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (514)
+ ++|+ +.+++++. +++|.+||+.+. .+.++++..|.... ..++++|||++|++++
T Consensus 376 ~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~---------------~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 376 F-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS---------------LFIKTHPKSSHLYVDT 439 (543)
T ss_dssp E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC---------------CCEECCTTCCEEEECC
T ss_pred c-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCc---------------eEEEcCCCCCcEEEec
Confidence 3 4777 66667764 599999999852 56778887775432 2799999999999987
Q ss_pred -------CCCcEEEEecCCCceeeeee--------cCCCcceeEEEECCCCCceeec-----CCCCeEEEeeCC
Q 010256 418 -------YSNLFRVFGCSEGSAESTTL--------EASKNPMRRQVQTPSRPSRPLG-----SLSGVVRRVKGA 471 (514)
Q Consensus 418 -------~dg~i~iwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~s~-----s~d~~v~i~~~~ 471 (514)
.+++|.+||+.+++.....+ ..+...+..+.|+|+|+++.++ +.|+.|.+++..
T Consensus 440 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~ 513 (543)
T 1nir_A 440 TFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK 513 (543)
T ss_dssp TTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETT
T ss_pred CCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECC
Confidence 37899999999886553443 4567889999999999998865 347999995443
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=6.2e-23 Score=194.60 Aligned_cols=261 Identities=12% Similarity=0.111 Sum_probs=191.4
Q ss_pred ccccccceEEEEEcC--------------CCCeEEEecCC------CeEEEEEecCCcccCCcccccccccccccCCccc
Q 010256 31 EVQEVDIISAIEFDK--------------SGDHLATGDRG------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~--------------~g~~l~tg~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (514)
...|...+..+++++ .+..++.++.+ +.|++||+.+...
T Consensus 113 ~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~--------------------- 171 (415)
T 2hqs_A 113 YKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ--------------------- 171 (415)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC---------------------
T ss_pred EEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC---------------------
Confidence 446777777777764 25677766654 7999999864332
Q ss_pred eeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCC---eEEEEEcCccEEEEEeeccCCCccccCCcce
Q 010256 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDK---TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI 167 (514)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v 167 (514)
..+.+|. ..|.+++| +++|++|++++.++ .|++||+.+++...+
T Consensus 172 ---~~l~~~~------------~~v~~~~~--Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l---------------- 218 (415)
T 2hqs_A 172 ---FVVHRSP------------QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQV---------------- 218 (415)
T ss_dssp ---EEEEEES------------SCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCEEEE----------------
T ss_pred ---EEEeCCC------------CcceeeEE--cCCCCEEEEEEecCCCcEEEEEECCCCcEEEe----------------
Confidence 3455666 77999999 67888999998875 999999988754221
Q ss_pred ecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCE
Q 010256 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 247 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 247 (514)
..|...+.+++|+|||+.
T Consensus 219 --------------------------------------------------------------~~~~~~~~~~~~spdg~~ 236 (415)
T 2hqs_A 219 --------------------------------------------------------------ASFPRHNGAPAFSPDGSK 236 (415)
T ss_dssp --------------------------------------------------------------ECCSSCEEEEEECTTSSE
T ss_pred --------------------------------------------------------------ecCCCcccCEEEcCCCCE
Confidence 234456889999999998
Q ss_pred EE-Ee-cCC--eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec-CC--eEEEEEcCCCccccc
Q 010256 248 FI-SA-DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIRLIDMRQSALCDT 320 (514)
Q Consensus 248 l~-s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~ 320 (514)
|+ ++ .++ .|++||+++++. . .+..|...+.+++|+|+| +.|++++. ++ .|.+||+.+++..
T Consensus 237 la~~~~~~g~~~i~~~d~~~~~~-~--------~l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~-- 304 (415)
T 2hqs_A 237 LAFALSKTGSLNLYVMDLASGQI-R--------QVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQ-- 304 (415)
T ss_dssp EEEEECTTSSCEEEEEETTTCCE-E--------ECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCE--
T ss_pred EEEEEecCCCceEEEEECCCCCE-E--------eCcCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCCEE--
Confidence 88 55 444 599999986543 2 345677889999999999 77777775 45 6777788776531
Q ss_pred cccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-C---CeEEEEEccCCCCceeeeeeccccccccccccccC
Q 010256 321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND 396 (514)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (514)
. +..+...+.+++|+|+|++|++++ + ..|.+||+.+ ++. ..+..+. .
T Consensus 305 ---~------------l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~-~~~-~~l~~~~-~----------- 355 (415)
T 2hqs_A 305 ---R------------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GGV-QVLSSTF-L----------- 355 (415)
T ss_dssp ---E------------CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-CCE-EECCCSS-S-----------
T ss_pred ---E------------EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC-CCE-EEecCCC-C-----------
Confidence 1 122335688999999999998753 2 5899999986 443 3343332 1
Q ss_pred CccceeeEEEcCCCCEEEEEeCCC---cEEEEecCCCceeeeeecCCCcceeEEEECCCCC
Q 010256 397 SIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 454 (514)
Q Consensus 397 ~~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 454 (514)
+.+++|+|||++|++++.++ .|++||+..+ ....+..|...|.+++|+|...
T Consensus 356 ----~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 356 ----DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ----CEEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEECCCSSSEEEEEEECCCCC
T ss_pred ----cCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cEEEeeCCCCCCcCCccccccc
Confidence 33899999999999888776 7999999743 3468889999999999999744
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=4.8e-23 Score=210.30 Aligned_cols=247 Identities=6% Similarity=-0.007 Sum_probs=160.4
Q ss_pred CeEEEEECCCCCEEEEecCCeEEEEeccC-----CCceeeeeccCCC-------cccccCCceEEEEEecCCCcEEEEEe
Q 010256 235 HINSISNNSDGETFISADDLRINLWNLEI-----SNQSFNIVDVKPA-------NMEDLTEVITSAEFHPTHCNMLAYSS 302 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~-----~~~~~~~~~~~~~-------~~~~~~~~i~~v~~~p~~~~~l~~~~ 302 (514)
.+.+++|+|||+.|+++.++.|++||+.+ ++.. .+...... ..+.+...+.++.|+||| +.|++++
T Consensus 122 ~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~-~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~ 199 (706)
T 2z3z_A 122 ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAI-AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYR 199 (706)
T ss_dssp CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCE-ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEEE
T ss_pred cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcE-EeccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEEE
Confidence 35567899999999988889999999986 4332 21100000 000111225789999999 8888887
Q ss_pred ---------------------------------cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 303 ---------------------------------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 303 ---------------------------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+..|++||+.+++... ... ...|...+.+++|
T Consensus 200 ~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~----~~~----------~~~~~~~~~~~~~ 265 (706)
T 2z3z_A 200 MDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY----LQT----------GEPKEKFLTNLSW 265 (706)
T ss_dssp EECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE----CCC----------CSCTTCEEEEEEE
T ss_pred ECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe----ecc----------CCCCceeEeeEEE
Confidence 34679999998876421 110 0123457899999
Q ss_pred ecCCCEEEEEe-CC-----eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC--CCCEEEEEeCCCc
Q 010256 350 ARNGRHILSRD-YM-----TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG--DGGRVATGSYSNL 421 (514)
Q Consensus 350 s~~g~~l~~~~-~~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~~dg~ 421 (514)
+|||+.|++++ ++ .|.+||+.+ ++....+....... .+..+..++|+| ||++|++++.|+.
T Consensus 266 spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~----------~~~~~~~~~~sp~~dg~~l~~~~~~g~ 334 (706)
T 2z3z_A 266 SPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVETDKH----------YVEPLHPLTFLPGSNNQFIWQSRRDGW 334 (706)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEEECSS----------CCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred ECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEccCCC----------eECccCCceeecCCCCEEEEEEccCCc
Confidence 99999888753 33 899999986 53443333221110 000012689999 9999999999999
Q ss_pred EEEEecCCCceeeeeecCCCcceeE-EEECCCCCceeecCC-CC----eEEEeeCCCCCccccCCcccccccceEEEEEc
Q 010256 422 FRVFGCSEGSAESTTLEASKNPMRR-QVQTPSRPSRPLGSL-SG----VVRRVKGADNSALDANGNAFDFSMKLLHLAWH 495 (514)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~s~-d~----~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s 495 (514)
++||.+.........+..+...+.. +.|+|+++.|+.++. ++ .|..++...-. ...+.+...+.+++||
T Consensus 335 ~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~s 409 (706)
T 2z3z_A 335 NHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-----TKDLTPESGMHRTQLS 409 (706)
T ss_dssp CEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-----CEESCCSSSEEEEEEC
T ss_pred cEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-----ceeccCCCceEEEEEC
Confidence 9999876322344667777777776 799999997765544 43 44443321111 1122356778999999
Q ss_pred CCCCEEEEEec-----CcEEEEe
Q 010256 496 PSENSIACAAS-----NSLYMYY 513 (514)
Q Consensus 496 pd~~~l~~~~~-----~~~~i~~ 513 (514)
|||++|+.... ..+++|.
T Consensus 410 pdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 410 PDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp TTSSEEEEEEECSSCSCEEEEEE
T ss_pred CCCCEEEEEecCCCCCcEEEEEE
Confidence 99999986643 2378875
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=1.6e-21 Score=179.94 Aligned_cols=288 Identities=9% Similarity=0.100 Sum_probs=182.0
Q ss_pred EEEcCCCCe-EEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEE
Q 010256 41 IEFDKSGDH-LATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (514)
Q Consensus 41 ~~~s~~g~~-l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~ 119 (514)
..|.+++.+ +++++.++.|.+||..+++.. ..+..+. ..+ .++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-----------------------~~~~~~~------------~~~-~~~ 46 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL-----------------------NQITLGY------------DFV-DTA 46 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEE-----------------------EEEECCC------------CEE-EEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccccee-----------------------eeEEccC------------Ccc-eEE
Confidence 456665554 777788999999999877632 2233333 446 899
Q ss_pred EeeCCCCcEEEEeeC-CCeEEEEEcCccEE-EEEeeccCCCccccCCcceecccccCCc-eeeccCCCccccccCCCCCC
Q 010256 120 WCQSANSALYLLSTN-DKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVSAIP-KSYMANGGCGERNFGCASND 196 (514)
Q Consensus 120 ~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 196 (514)
| +++++++++++. ++.|.+||+.+++. ......... +.. ++|+|+|+.+
T Consensus 47 ~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~----------------~~~~~~~s~dg~~l---------- 98 (331)
T 3u4y_A 47 I--TSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQS----------------SMADVDITPDDQFA---------- 98 (331)
T ss_dssp E--CSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSS----------------CCCCEEECTTSSEE----------
T ss_pred E--cCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCC----------------CccceEECCCCCEE----------
Confidence 9 567776666654 89999999998875 443333311 114 8999999987
Q ss_pred cccCCCCC-C--cEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCe-EEEEeccCCCceeee
Q 010256 197 SSFPPGGV-S--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLR-INLWNLEISNQSFNI 270 (514)
Q Consensus 197 ~~~~~~~~-~--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~-i~iwd~~~~~~~~~~ 270 (514)
++...+ + .|.+|| +...+ ....+ .......+++|+|+|++++++ .++. |.+|++...+.....
T Consensus 99 --~~~~~~~~~~~i~v~d-~~~~~------~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~ 167 (331)
T 3u4y_A 99 --VTVTGLNHPFNMQSYS-FLKNK------FISTI--PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT 167 (331)
T ss_dssp --EECCCSSSSCEEEEEE-TTTTE------EEEEE--ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred --EEecCCCCcccEEEEE-CCCCC------eEEEE--ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec
Confidence 644444 3 899999 33222 11121 223456899999999865554 5677 999999854433221
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
. .........+..++|+|++..+++++..++.|.+||+.+++... ....+.. ...+..++|+
T Consensus 168 ~----~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~-~~~~~~~-------------~~~~~~~~~s 229 (331)
T 3u4y_A 168 G----QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT-LLNAVGT-------------NNLPGTIVVS 229 (331)
T ss_dssp E----EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-EEEEEEC-------------SSCCCCEEEC
T ss_pred C----CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-eeeeccC-------------CCCCceEEEC
Confidence 0 01112345579999999993355556678999999998876411 0112221 1457889999
Q ss_pred cCCCEEEEEe--CCeEEEEEccCCCCc--eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe-CCCcEEEE
Q 010256 351 RNGRHILSRD--YMTLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVF 425 (514)
Q Consensus 351 ~~g~~l~~~~--~~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw 425 (514)
|+|++++.+. ++.|.+||+.+ ++. +..+..+-.... ........++|+|||++|++++ .++.|.+|
T Consensus 230 pdg~~l~v~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 300 (331)
T 3u4y_A 230 RDGSTVYVLTESTVDVFNFNQLS-GTLSFVKSFGHGLLIDP--------RPLFGANQMALNKTETKLFISANISRELKVF 300 (331)
T ss_dssp TTSSEEEEECSSEEEEEEEETTT-TEEEEEEEEECCCCCCC--------GGGTTCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEEcCCCEEEEEECCC-CceeeecccccccccCC--------CCcccccceEECCCCCEEEEecCCCCcEEEE
Confidence 9999877653 37899999986 554 222222100000 0111112589999999886555 56799999
Q ss_pred ecCCC
Q 010256 426 GCSEG 430 (514)
Q Consensus 426 d~~~~ 430 (514)
|+...
T Consensus 301 d~~~~ 305 (331)
T 3u4y_A 301 TISGK 305 (331)
T ss_dssp ETTSC
T ss_pred EecCC
Confidence 99854
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=2.8e-21 Score=179.98 Aligned_cols=283 Identities=8% Similarity=0.042 Sum_probs=197.2
Q ss_pred ccccceEEEEEcCCCCeEEEecC-------CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDR-------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (514)
.....+..++|+|+|++|++++. ++.|.+||..+++.. ..+...
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~-----------------------~~~~~~------ 88 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT-----------------------QAIHND------ 88 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE-----------------------EEEEES------
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE-----------------------EEEecC------
Confidence 44567889999999998888774 568999998876632 222221
Q ss_pred ccccccccceeEEEEeeCCCCcEEEE-eeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCC
Q 010256 106 LKSLEIEEKINKIRWCQSANSALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (514)
Q Consensus 106 ~~~~~~~~~v~~i~~~~~~~~~~l~s-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 184 (514)
..+..++| +++++++++ ...++.|.+||..+++............
T Consensus 89 -------~~~~~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~------------------------- 134 (353)
T 3vgz_A 89 -------LKPFGATI--NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR------------------------- 134 (353)
T ss_dssp -------SCCCSEEE--ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC-------------------------
T ss_pred -------CCcceEEE--CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc-------------------------
Confidence 34677888 456665554 5668999999999887655443321000
Q ss_pred ccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe---cCCeEEEEec
Q 010256 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNL 261 (514)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---~d~~i~iwd~ 261 (514)
.+ ......+.+++|+|+++.++++ .++.|.+||.
T Consensus 135 -------------------------------~~------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~ 171 (353)
T 3vgz_A 135 -------------------------------TE------------EVRPLQPRELVADDATNTVYISGIGKESVIWVVDG 171 (353)
T ss_dssp -------------------------------CS------------SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEET
T ss_pred -------------------------------cc------------ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcC
Confidence 00 0011235789999999977765 3789999999
Q ss_pred cCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccc
Q 010256 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (514)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (514)
++.+.... +..+...+.+++|+|++ +.+++++.++.|.+||+.+++.. ..+.... .++.
T Consensus 172 ~~~~~~~~--------~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~----~~~~~~~--------~~~~ 230 (353)
T 3vgz_A 172 GNIKLKTA--------IQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKIL----SRKKLLD--------DGKE 230 (353)
T ss_dssp TTTEEEEE--------ECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEE----EEEECCC--------SSSC
T ss_pred CCCceEEE--------ecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEE----EEEEcCC--------CCCC
Confidence 86654332 22234457889999999 78888999999999999987753 2222110 1123
Q ss_pred cceeEEEEecCCCEEEEEe-C-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe-C
Q 010256 342 ASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-Y 418 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~ 418 (514)
..+..++|+|+|++++.++ + +.|.+||..+ ++.+..+...... .++|+|+|++++.++ .
T Consensus 231 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~~-----------------~~~~s~dg~~l~v~~~~ 292 (353)
T 3vgz_A 231 HFFINISLDTARQRAFITDSKAAEVLVVDTRN-GNILAKVAAPESL-----------------AVLFNPARNEAYVTHRQ 292 (353)
T ss_dssp CCEEEEEEETTTTEEEEEESSSSEEEEEETTT-CCEEEEEECSSCC-----------------CEEEETTTTEEEEEETT
T ss_pred cccceEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCCc-----------------eEEECCCCCEEEEEECC
Confidence 4678899999999877753 3 8999999987 7777766643321 799999999666555 7
Q ss_pred CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCC
Q 010256 419 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d 462 (514)
++.|.+||..+++. ...+... ..+..++|+|++++|+.+..+
T Consensus 293 ~~~v~~~d~~~~~~-~~~~~~~-~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 293 AGKVSVIDAKSYKV-VKTFDTP-THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TTEEEEEETTTTEE-EEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred CCeEEEEECCCCeE-EEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence 89999999988743 3444443 367899999999977666543
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=1.5e-21 Score=181.01 Aligned_cols=235 Identities=14% Similarity=0.149 Sum_probs=142.7
Q ss_pred CeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEE
Q 010256 235 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLID 311 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~~wd 311 (514)
.+..++|+|++++|+++ .++.|.+||+..+ ....... .+. ....+.+++|+|++ +.+++++ .++.|++||
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~-~~~~~~~----~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d 157 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG-LPVGVVD----VVE-GLDGCHSANISPDN-RTLWVPALKQDRICLFT 157 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETT-EEEEEEE----EEC-CCTTBCCCEECTTS-SEEEEEEGGGTEEEEEE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCC-ccccccc----ccc-CCCCceEEEECCCC-CEEEEecCCCCEEEEEE
Confidence 56789999999987665 5899999999522 1111110 112 23458889999999 6666666 899999999
Q ss_pred cCC-Ccccccccc--ceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--CCeEEEEEccCCCCceeeeeeccccc
Q 010256 312 MRQ-SALCDTHSK--LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 312 ~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
+.+ ++... .. .+... ....+..++|+|+|+++++++ ++.|.+||+......+..........
T Consensus 158 ~~~~~~~~~--~~~~~~~~~-----------~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~ 224 (343)
T 1ri6_A 158 VSDDGHLVA--QDPAEVTTV-----------EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP 224 (343)
T ss_dssp ECTTSCEEE--EEEEEEECS-----------TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSC
T ss_pred ecCCCceee--ecccccccC-----------CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccC
Confidence 987 44311 00 11111 113678899999999776643 49999999963122221111111000
Q ss_pred cccccccccCCccceeeEEEcCCCCEEE-EEeCCCcEEEEecCC--Cc-eeeeeecCCCcceeEEEECCCCCceeecC-C
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSE--GS-AESTTLEASKNPMRRQVQTPSRPSRPLGS-L 461 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~--~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~s-~ 461 (514)
.. + .....+..++|+|+|++|+ ++..++.|++||+.. +. .....+..+.. +..++|+|++++|++++ .
T Consensus 225 ~~----~--~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~ 297 (343)
T 1ri6_A 225 EN----F--SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQK 297 (343)
T ss_dssp TT----C--CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTT
T ss_pred cc----c--cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCC
Confidence 00 0 0011133699999999877 445789999999983 22 22234444444 88999999999887776 6
Q ss_pred CCeEEEe--eCC--CCCccccCCcccccccceEEEEEcCCCCE
Q 010256 462 SGVVRRV--KGA--DNSALDANGNAFDFSMKLLHLAWHPSENS 500 (514)
Q Consensus 462 d~~v~i~--~~~--~~~~~~~~~~~~~~~~~v~~~~~spd~~~ 500 (514)
++.+.++ +.. .+. . ...+.......+++|.|+.+.
T Consensus 298 ~~~v~v~~~d~~~g~~~---~-~~~~~~g~~p~~i~~~~~~~~ 336 (343)
T 1ri6_A 298 SHHISVYEIVGEQGLLH---E-KGRYAVGQGPMWVVVNAHEGG 336 (343)
T ss_dssp TCEEEEEEEETTTTEEE---E-EEEEECSSSCCEEEEEEEC--
T ss_pred CCeEEEEEEcCCCceee---E-ccccccCCCCeeEEEEcccCC
Confidence 8999983 311 111 0 011112345667777776553
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=4e-22 Score=180.63 Aligned_cols=258 Identities=13% Similarity=0.124 Sum_probs=177.8
Q ss_pred EecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEE
Q 010256 52 TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLL 131 (514)
Q Consensus 52 tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s 131 (514)
.++.|+.|++||+.+++.. .+..|. ..|.+++| ++++++|++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~------------------------~~~~~~------------~~v~~~~~--spdg~~l~~ 58 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR------------------------VVWQTP------------ELFEAPNW--SPDGKYLLL 58 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE------------------------EEEEES------------SCCEEEEE--CTTSSEEEE
T ss_pred CCCcceeEEEEeCCCCcee------------------------eeccCC------------cceEeeEE--CCCCCEEEE
Confidence 3467899999998776531 233455 77999999 667888888
Q ss_pred eeCCCeEEEEEcCc-cEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEec
Q 010256 132 STNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLP 210 (514)
Q Consensus 132 ~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~ 210 (514)
++ ++.|++||+.+ ++......
T Consensus 59 ~~-~~~i~~~d~~~~~~~~~~~~--------------------------------------------------------- 80 (297)
T 2ojh_A 59 NS-EGLLYRLSLAGDPSPEKVDT--------------------------------------------------------- 80 (297)
T ss_dssp EE-TTEEEEEESSSCCSCEECCC---------------------------------------------------------
T ss_pred Ec-CCeEEEEeCCCCCCceEecc---------------------------------------------------------
Confidence 76 78999999987 54221100
Q ss_pred eeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-c--CCeEEEEeccCCCceeeeeccCCCcccccCCceEE
Q 010256 211 VVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITS 287 (514)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 287 (514)
..+...+.+++|+|++++|+++ . ++...+|.++....... .+.. ...+..
T Consensus 81 -------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~-~~~~~~ 133 (297)
T 2ojh_A 81 -------------------GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR-------LMTK-NLPSYW 133 (297)
T ss_dssp -------------------TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE-------ECCS-SSSEEE
T ss_pred -------------------ccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE-------Eeec-CCCccc
Confidence 1122456788999999999887 3 24555555432222111 1222 234889
Q ss_pred EEEecCCCcEEE-EEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--CCeE
Q 010256 288 AEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTL 364 (514)
Q Consensus 288 v~~~p~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i 364 (514)
++|+|++ +.|+ ++..++.+++|+++..... ... +..+...+.+++|+|+|++|+.+. ++.+
T Consensus 134 ~~~spdg-~~l~~~~~~~~~~~l~~~~~~~~~---~~~------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 197 (297)
T 2ojh_A 134 HGWSPDG-KSFTYCGIRDQVFDIYSMDIDSGV---ETR------------LTHGEGRNDGPDYSPDGRWIYFNSSRTGQM 197 (297)
T ss_dssp EEECTTS-SEEEEEEEETTEEEEEEEETTTCC---EEE------------CCCSSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred eEECCCC-CEEEEEECCCCceEEEEEECCCCc---ceE------------cccCCCccccceECCCCCEEEEEecCCCCc
Confidence 9999999 5555 7888999999997532111 111 223446789999999999888653 4889
Q ss_pred EEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC-----------CcEEEEecCCCcee
Q 010256 365 KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----------NLFRVFGCSEGSAE 433 (514)
Q Consensus 365 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----------g~i~iwd~~~~~~~ 433 (514)
++|++...+..+..+..+... +..++|+|+|++|++++.+ +.|++||+.+++..
T Consensus 198 ~i~~~~~~~~~~~~~~~~~~~---------------~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 262 (297)
T 2ojh_A 198 QIWRVRVDGSSVERITDSAYG---------------DWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE 262 (297)
T ss_dssp EEEEEETTSSCEEECCCCSEE---------------EEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE
T ss_pred cEEEECCCCCCcEEEecCCcc---------------cCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce
Confidence 999987435556555544432 3479999999999988765 56999999876443
Q ss_pred e-eeecCCCcceeEEEECCCCCceeecCCCC
Q 010256 434 S-TTLEASKNPMRRQVQTPSRPSRPLGSLSG 463 (514)
Q Consensus 434 ~-~~~~~~~~~v~~~~~~~~~~~l~s~s~d~ 463 (514)
. ..+.+|...+..+.|+|++++|++++.+.
T Consensus 263 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 263 TLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred eeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 2 34557888899999999999998887553
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=5.1e-22 Score=179.95 Aligned_cols=234 Identities=12% Similarity=0.086 Sum_probs=162.3
Q ss_pred cCccCeEEEEECCCCCEEEEecCCeEEEEeccC-CCceeeeeccCCCccccc-CCceEEEEEecCCCcEEEEEe--cCCe
Q 010256 231 AHDYHINSISNNSDGETFISADDLRINLWNLEI-SNQSFNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSS--SKGS 306 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~-~~~i~~v~~~p~~~~~l~~~~--~dg~ 306 (514)
.|...|.+++|+|++++|+++.++.|++||+.+ ++.. .+ ...+ ...+.+++|+|++ ++|++++ .++.
T Consensus 39 ~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~-~~-------~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~ 109 (297)
T 2ojh_A 39 QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPE-KV-------DTGFATICNNDHGISPDG-ALYAISDKVEFGK 109 (297)
T ss_dssp EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCE-EC-------CCTTCCCBCSCCEECTTS-SEEEEEECTTTSS
T ss_pred cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCce-Ee-------ccccccccccceEECCCC-CEEEEEEeCCCCc
Confidence 455778999999999999999888999999986 4432 21 2223 4678899999999 7888888 3345
Q ss_pred EEEEEc--CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEE-EE-eCCeEEEEEccCCCCceeeeeec
Q 010256 307 IRLIDM--RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL-SR-DYMTLKLWDINMDSGPVATFQVH 382 (514)
Q Consensus 307 i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-~~-~~~~i~iwd~~~~~~~~~~~~~~ 382 (514)
..||.+ .++.. ..+.. + ..+..++|+|++++|+ ++ .++.++||++.........+..+
T Consensus 110 ~~l~~~~~~~~~~-----~~~~~------------~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 110 SAIYLLPSTGGTP-----RLMTK------------N-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp CEEEEEETTCCCC-----EECCS------------S-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS
T ss_pred ceEEEEECCCCce-----EEeec------------C-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC
Confidence 555554 43321 11111 1 2488899999999887 44 45899999976534444444433
Q ss_pred cccccccccccccCCccceeeEEEcCCCCEEEEEe-CCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCC
Q 010256 383 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
... +.+++|+|+|++|+.++ .++.+++|++.........+..|...+..+.|+|++++|++++.
T Consensus 172 ~~~---------------~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 236 (297)
T 2ojh_A 172 EGR---------------NDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSY 236 (297)
T ss_dssp SSC---------------EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred CCc---------------cccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence 322 34899999999888666 58999999986333444677788888999999999999998887
Q ss_pred C-----------CeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecC
Q 010256 462 S-----------GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN 507 (514)
Q Consensus 462 d-----------~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~ 507 (514)
+ +.+.+++...-.. ........+...+..++|+||+++|++++.+
T Consensus 237 ~~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 237 DADVFDHPRDLDVRVQLMDMDGGNV-ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp ETTCCSCCSSEEEEEEEEETTSCSC-EEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred CCCCCcccccCceEEEEEecCCCCc-eeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 6 3466633221110 0111122456788999999999999977643
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=8.4e-21 Score=175.88 Aligned_cols=283 Identities=12% Similarity=0.100 Sum_probs=175.0
Q ss_pred ccccccceEEEEEcCCCCeEEEecCC-CeEEEEEec--CCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRG-GRVVLFERT--DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
...|...+.+++|+|+|++|++++.+ +.|.+|++. +++.. ....+..+
T Consensus 33 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~---------------------~~~~~~~~-------- 83 (343)
T 1ri6_A 33 VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT---------------------FAAESALP-------- 83 (343)
T ss_dssp EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE---------------------EEEEEECS--------
T ss_pred eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee---------------------eccccccC--------
Confidence 45677889999999999999888876 899999987 33311 22222222
Q ss_pred ccccccceeEEEEeeCCCCcEEEEee-CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
..+..++| +++++++++++ .++.|.+||+.++........
T Consensus 84 -----~~~~~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-------------------------------- 124 (343)
T 1ri6_A 84 -----GSLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV-------------------------------- 124 (343)
T ss_dssp -----SCCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE--------------------------------
T ss_pred -----CCCcEEEE--cCCCCEEEEEecCCCeEEEEECCCCcccccccc--------------------------------
Confidence 45888999 56777777665 488999999853321111000
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCC
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEIS 264 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~ 264 (514)
......+.+++|+|+++.++++ .++.|++||+.+.
T Consensus 125 -------------------------------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 161 (343)
T 1ri6_A 125 -------------------------------------------VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD 161 (343)
T ss_dssp -------------------------------------------ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred -------------------------------------------ccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence 0011236778999999877765 7999999999863
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEE-EEEecCCeEEEEEcCC--CccccccccceeccCCCCccceeeccc
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFTEII 341 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l-~~~~~dg~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (514)
......... . ........+..++|+|++ +++ +++..++.|.+||+.. +... ....+..... -....
T Consensus 162 ~~~~~~~~~-~-~~~~~~~~~~~~~~~pdg-~~l~~~~~~~~~i~~~~~~~~~g~~~--~~~~~~~~~~------~~~~~ 230 (343)
T 1ri6_A 162 GHLVAQDPA-E-VTTVEGAGPRHMVFHPNE-QYAYCVNELNSSVDVWELKDPHGNIE--CVQTLDMMPE------NFSDT 230 (343)
T ss_dssp SCEEEEEEE-E-EECSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEESSCTTSCCE--EEEEEECSCT------TCCSC
T ss_pred Cceeeeccc-c-cccCCCCCcceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEE--EEeeccccCc------ccccc
Confidence 332211000 0 011124568899999999 555 5555899999999954 3211 0111110000 00012
Q ss_pred cceeEEEEecCCCEEEEE-e-CCeEEEEEccCCC---CceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE
Q 010256 342 ASISDIKFARNGRHILSR-D-YMTLKLWDINMDS---GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 416 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~~-~-~~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 416 (514)
..+..++|+|+|++|+++ . ++.|.+||+.... +.+..+..+.. +..++|+|+|++|+++
T Consensus 231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~----------------~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 231 RWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ----------------PRGFNVDHSGKYLIAA 294 (343)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS----------------CCCEEECTTSSEEEEE
T ss_pred CCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc----------------cceEEECCCCCEEEEe
Confidence 357789999999988754 3 4999999998322 22222322221 2279999999988887
Q ss_pred e-CCCcEEEEecC--CCcee-eeeecCCCcceeEEEECCC
Q 010256 417 S-YSNLFRVFGCS--EGSAE-STTLEASKNPMRRQVQTPS 452 (514)
Q Consensus 417 ~-~dg~i~iwd~~--~~~~~-~~~~~~~~~~v~~~~~~~~ 452 (514)
+ .++.|.+|++. ++... ...+... .....++|.++
T Consensus 295 ~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~ 333 (343)
T 1ri6_A 295 GQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAH 333 (343)
T ss_dssp CTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEE
T ss_pred cCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcc
Confidence 7 68999999554 44322 1233332 33446666555
No 142
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=5.8e-22 Score=202.68 Aligned_cols=328 Identities=10% Similarity=0.015 Sum_probs=200.1
Q ss_pred EEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEE
Q 010256 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (514)
Q Consensus 40 ~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~ 119 (514)
+++|+|||++++++ .|+.|++||+.+++.. ..+.+|.. ....+.+++
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~-----------------------~~~~~~~~---------~~~~~~~~~ 66 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY-----------------------TILSNRTM---------KSVNASNYG 66 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEE-----------------------EEECHHHH---------HTTTCSEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE-----------------------EEEccccc---------cccceeeEE
Confidence 78999999766665 6999999999877632 22232220 001388999
Q ss_pred EeeCCCCcEEEEeeC---------CCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 120 WCQSANSALYLLSTN---------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 120 ~~~~~~~~~l~s~~~---------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
| ++||++|++++. ++.|++||+.+++......
T Consensus 67 ~--SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~------------------------------------- 107 (719)
T 1z68_A 67 L--SPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE------------------------------------- 107 (719)
T ss_dssp E--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-------------------------------------
T ss_pred E--CCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-------------------------------------
Confidence 9 678889998876 7899999998876310000
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~ 270 (514)
+ ...+..++|+|||+.|+.+.++.|++|++.+++.. .+
T Consensus 108 --------------------------------------l---~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~-~l 145 (719)
T 1z68_A 108 --------------------------------------L---PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPF-QI 145 (719)
T ss_dssp --------------------------------------C---CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCE-EC
T ss_pred --------------------------------------c---CcccccceECCCCCEEEEEECCeEEEEeCCCCCcE-EE
Confidence 0 02366789999999999998889999999865432 22
Q ss_pred e-ccCCC-cccccCC---------ceEEEEEecCCCcEEEEEecCC----------------------------------
Q 010256 271 V-DVKPA-NMEDLTE---------VITSAEFHPTHCNMLAYSSSKG---------------------------------- 305 (514)
Q Consensus 271 ~-~~~~~-~~~~~~~---------~i~~v~~~p~~~~~l~~~~~dg---------------------------------- 305 (514)
. ..... .+.++.. ...+++|+||| +.|++++.|.
T Consensus 146 ~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~ 224 (719)
T 1z68_A 146 TFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVV 224 (719)
T ss_dssp CCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEE
T ss_pred ecCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCee
Confidence 1 00000 0111111 12489999999 8888887652
Q ss_pred eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-----CeEEEEE----ccCCCCce
Q 010256 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-----MTLKLWD----INMDSGPV 376 (514)
Q Consensus 306 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-----~~i~iwd----~~~~~~~~ 376 (514)
.|++||+.+++.... . .+.. ...+.+|...+.+++|+||++++++..+ ..|.+|| +.+ ++..
T Consensus 225 ~l~~~d~~~~~~~~~-~-~~~~------~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~ 295 (719)
T 1z68_A 225 RIFIIDTTYPAYVGP-Q-EVPV------PAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-WDCP 295 (719)
T ss_dssp EEEEEESSCHHHHCC-E-ECCC------CHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-EECC
T ss_pred EEEEEECCCCCccce-e-EccC------CccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-CceE
Confidence 788899887653100 0 0000 0113345678999999999887777422 3588889 654 4444
Q ss_pred eee----eeccccccccccccccCCccceeeEEEcCCCCEEEE--EeCCC--cEEEEecCCCceeeeeecCCCcceeEEE
Q 010256 377 ATF----QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSN--LFRVFGCSEGSAESTTLEASKNPMRRQV 448 (514)
Q Consensus 377 ~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 448 (514)
..+ ..+...... . ....++|+|||+.|+. ...+| .|++||+.++. ...+..+...+..+.
T Consensus 296 ~~~~~~~~~~~~~~~~-------~---~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~ 363 (719)
T 1z68_A 296 KTQEHIEESRTGWAGG-------F---FVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQITSGKWEAINIF 363 (719)
T ss_dssp GGGEEEEECSSSCSSS-------S---SCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEECSCSSSCEEEEE
T ss_pred EEEecccccCCceEcc-------c---cCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEecccCceEEEEEE
Confidence 333 233322100 0 0015789999996554 44555 57777877654 345555666677777
Q ss_pred ECCCCCceeecCCC-----CeEEE--ee--CCCCCccccCCcccccccceEEEEEcCCCCEEEEE
Q 010256 449 QTPSRPSRPLGSLS-----GVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 449 ~~~~~~~l~s~s~d-----~~v~i--~~--~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~ 504 (514)
+. +++.|+..+.+ +..++ ++ +.......+.....++...+..+.|+||+++|+..
T Consensus 364 ~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~ 427 (719)
T 1z68_A 364 RV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALV 427 (719)
T ss_dssp EE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEE
T ss_pred EE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEE
Confidence 77 77776665544 66666 22 12111001111111245678899999999988854
No 143
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=1.6e-21 Score=200.14 Aligned_cols=304 Identities=8% Similarity=-0.010 Sum_probs=194.3
Q ss_pred cceeEEEEeeCCCCcEEEEeeC-CC-----eEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 113 EKINKIRWCQSANSALYLLSTN-DK-----TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~-d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
..+.+++| ++||++|++++. |+ .|++||+.+++.......+.. .|+++.+
T Consensus 37 ~~~~~~~~--SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~----------------------~~~~~~~ 92 (741)
T 2ecf_A 37 PTLMKPKV--APDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVV----------------------LPGTETL 92 (741)
T ss_dssp CCCEEEEE--CTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGT----------------------C------
T ss_pred CCCCCceE--ecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhc----------------------ccccccc
Confidence 56999999 678899999987 88 999999999887665543311 1223222
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCC-
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISN- 265 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~- 265 (514)
.. ..... ..... ......+.+++|+|||++|+++.++.|++||+.++.
T Consensus 93 ------------~~--~~~~~---------------~~~~~--~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~ 141 (741)
T 2ecf_A 93 ------------SD--EEKAR---------------RERQR--IAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGK 141 (741)
T ss_dssp ---------------------------------------------CCEESCCCEECTTSSEEEEEETTEEEEEESSSCST
T ss_pred ------------cc--hhhhh---------------hhhhh--hccccCcceeEECCCCCEEEEEeCCcEEEEECCCCCc
Confidence 00 00000 00000 011234778999999999999955999999998652
Q ss_pred -ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeec-----
Q 010256 266 -QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE----- 339 (514)
Q Consensus 266 -~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 339 (514)
... .+..+...+..++|+||| +.|++++ ++.|++||+.+++.. +....... ....+
T Consensus 142 ~~~~--------~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~~----~~~~~~~~----~~~~g~~~~v 203 (741)
T 2ecf_A 142 AAVR--------QLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQM----QLTADGST----TIGNGIAEFV 203 (741)
T ss_dssp TSCC--------BCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEEE----ECCCCCCS----SEEESCCCHH
T ss_pred ceEE--------EcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCEE----EeccCCcc----ceecccccee
Confidence 221 345567789999999999 8888877 569999999887642 11111100 00000
Q ss_pred ---cccceeEEEEecCCCEEEEEe-CC---------------------------------eEEEEEccCCCCceeeeee-
Q 010256 340 ---IIASISDIKFARNGRHILSRD-YM---------------------------------TLKLWDINMDSGPVATFQV- 381 (514)
Q Consensus 340 ---~~~~i~~~~~s~~g~~l~~~~-~~---------------------------------~i~iwd~~~~~~~~~~~~~- 381 (514)
....+.+++|||||++|++++ ++ .|.+||+...++.......
T Consensus 204 ~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 283 (741)
T 2ecf_A 204 ADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGK 283 (741)
T ss_dssp HHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCS
T ss_pred eeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCC
Confidence 012257899999999998863 23 7778887631222221111
Q ss_pred -ccccccccccccccCCccceeeEEEcCCCCEEEEEeC-----CCcEEEEecCCCceeeeeecCCCc----ceeEEEECC
Q 010256 382 -HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-----SNLFRVFGCSEGSAESTTLEASKN----PMRRQVQTP 451 (514)
Q Consensus 382 -~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~----~v~~~~~~~ 451 (514)
+.. .+..++| |||++|++++. +..|++||+.+++.. ..+..+.. .+..+.|+|
T Consensus 284 ~~~~---------------~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 284 EQDI---------------YLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR-VLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp CSSE---------------EEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE-EEEEEECSSCCCCCSCCEECT
T ss_pred Ccce---------------EEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE-EEEEcCCCCcCCcCCceEECC
Confidence 111 1348999 99999987653 568999999987543 44444432 456889999
Q ss_pred CCCceeecCCCCeEEE--ee--CCCCCccccCCcccccccceEEE-EEcCCCCEEEEE-ecC---cEEEEe
Q 010256 452 SRPSRPLGSLSGVVRR--VK--GADNSALDANGNAFDFSMKLLHL-AWHPSENSIACA-ASN---SLYMYY 513 (514)
Q Consensus 452 ~~~~l~s~s~d~~v~i--~~--~~~~~~~~~~~~~~~~~~~v~~~-~~spd~~~l~~~-~~~---~~~i~~ 513 (514)
|++++++++.|+.+++ ++ +. . .....+...|..+ +|+||++.|+.. +.+ .+.||.
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~~-~------~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKGK-A------AALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSSC-E------EESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred CCeEEEEecCCCccEEEEEcCCCC-e------eeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 9999999999998777 22 21 1 1122356678787 599999988744 444 566774
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=3.6e-21 Score=196.39 Aligned_cols=307 Identities=12% Similarity=0.059 Sum_probs=187.8
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
..|++++|||| .+++.+ .++.|++||+.+++.. .+..+. ..+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~------------------------~l~~~~------------~~~ 123 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVT------------------------YLFDTN------------EET 123 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEE------------------------EEECCT------------TCC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceE------------------------EccCCc------------ccc
Confidence 56999999999 666655 4699999999776531 223333 558
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCc-----cEEEEEeeccCCCccccCCcc-ee-cccccCCceeeccCCCcccc
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQE-----KKVKKVFDWNVHPEKAAGNGP-IF-GSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~-v~-~~~~~~~~~~~~~~~~~l~~ 188 (514)
.+++| +++|++|+++ .|+.|++|++.+ ++........... ...+. +. ........+.|+|||+.+..
T Consensus 124 ~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~---~~~g~~~~~ee~~~~~~~~~SpDg~~la~ 197 (706)
T 2z3z_A 124 ASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTET---LVYGQAVHQREFGIEKGTFWSPKGSCLAF 197 (706)
T ss_dssp TTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTT---EEESSCCGGGCTTCCCSEEECTTSSEEEE
T ss_pred cCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCC---eEcccchhhhhcCCCceEEECCCCCEEEE
Confidence 88899 6788888885 679999999998 7655433222110 00000 00 00001237899999998832
Q ss_pred ccCCCCC-------------------CcccC--CCCCCcEEeceeecccccccccccccccc-ccCccCeEEEEECCCCC
Q 010256 189 NFGCASN-------------------DSSFP--PGGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDGE 246 (514)
Q Consensus 189 ~~~~~~~-------------------~~~~~--~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~ 246 (514)
....... .+... ...+..|.+|| +...+. ..... ..|...+.+++|+|||+
T Consensus 198 ~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d-~~~~~~------~~~~~~~~~~~~~~~~~~spdg~ 270 (706)
T 2z3z_A 198 YRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH-LATGKT------VYLQTGEPKEKFLTNLSWSPDEN 270 (706)
T ss_dssp EEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE-TTTTEE------EECCCCSCTTCEEEEEEECTTSS
T ss_pred EEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE-CCCCce------EeeccCCCCceeEeeEEEECCCC
Confidence 2100000 00000 11446788888 332211 11111 25667899999999999
Q ss_pred EEEEe-cCC-----eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEec--CCCcEEEEEecCCeEEEEEcC-CCcc
Q 010256 247 TFISA-DDL-----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMR-QSAL 317 (514)
Q Consensus 247 ~l~s~-~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p--~~~~~l~~~~~dg~i~~wd~~-~~~~ 317 (514)
.|+++ .++ .|++||+.+++....+... ........+.+++|+| +| +++++++.|+.++||++. ++..
T Consensus 271 ~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~---~~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~~ 346 (706)
T 2z3z_A 271 ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE---TDKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGRL 346 (706)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE---ECSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSCE
T ss_pred EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc---cCCCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCCE
Confidence 98886 554 9999999866333322110 0001112346789999 98 799999999999999886 3332
Q ss_pred ccccccceeccCCCCccceeeccccceeE-EEEecCCCEEEEE-eC-C----eEEEEEccCCCCceeeeeeccccccccc
Q 010256 318 CDTHSKLFEEQEAPGTRSFFTEIIASISD-IKFARNGRHILSR-DY-M----TLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~~g~~l~~~-~~-~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
... +..+...+.. ++|+|+|+.|+.+ .+ + .|..||+.. ++ ...+. +...
T Consensus 347 ----~~~------------l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~-~~~~----- 402 (706)
T 2z3z_A 347 ----IRQ------------VTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG-GK-TKDLT-PESG----- 402 (706)
T ss_dssp ----EEE------------CCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC-CC-CEESC-CSSS-----
T ss_pred ----EEe------------cCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC-CC-ceecc-CCCc-----
Confidence 111 2233355766 7999999988764 33 4 555566654 33 33332 2111
Q ss_pred cccccCCccceeeEEEcCCCCEEEEEeCC----CcEEEEecCCCc
Q 010256 391 DLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGS 431 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~ 431 (514)
+.+++|+|||++|+....+ +.|++||+.+++
T Consensus 403 ----------~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 403 ----------MHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ----------EEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ----------eEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 3489999999998866443 569999998764
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=3.9e-20 Score=171.72 Aligned_cols=271 Identities=10% Similarity=0.108 Sum_probs=168.4
Q ss_pred ccccccceEEEEEcCCCCeEEEecC---CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
...+...+..++|+|||+ |++++. ++.|.+|++.+++.. .+..+..+.
T Consensus 35 ~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~---------------------~~~~~~~~~------- 85 (347)
T 3hfq_A 35 LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH---------------------KLNTVVAPG------- 85 (347)
T ss_dssp EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE---------------------EEEEEEEES-------
T ss_pred eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE---------------------EeeeeecCC-------
Confidence 345667788999999999 555543 689999999765421 223333343
Q ss_pred ccccccceeEEEEeeCCCCcEEEEee-CCCeEEEEEcC-ccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~~-~d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
..+..++| +++|++|++++ .++.|.+|++. ++........... +..
T Consensus 86 -----~~p~~~a~--spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~-------------------------~~~ 133 (347)
T 3hfq_A 86 -----TPPAYVAV--DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHS-------------------------GHG 133 (347)
T ss_dssp -----CCCSEEEE--ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECC-------------------------CCC
T ss_pred -----CCCEEEEE--CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecC-------------------------CCC
Confidence 56889999 56788888877 78999999995 3333222111100 000
Q ss_pred cccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCC
Q 010256 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~ 264 (514)
+. ...+...+.+++|+|+|+++++. .++.|++|++...
T Consensus 134 --------------------------------------p~---~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 134 --------------------------------------PR---PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp --------------------------------------SS---TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred --------------------------------------CC---ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence 00 01233568899999999966666 7899999999833
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCC--CccccccccceeccCCCCccceeecccc
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
......... .......+..++|+|+|..+++++..++.|.+|++.. ++.. ....+..... . +. ...
T Consensus 173 g~~~~~~~~----~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~--~~~~~~~~~~--~---~~-~~~ 240 (347)
T 3hfq_A 173 GQLSEQSVL----TMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT--QLGIVKTIPA--D---YT-AHN 240 (347)
T ss_dssp SCEEEEEEE----ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE--EEEEEESSCT--T---CC-SCC
T ss_pred CcEEEeeeE----EcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE--EeeeeeecCC--C---CC-CCC
Confidence 322211100 0112345788999999933455566789999999875 3321 0111111100 0 00 013
Q ss_pred ceeEEEEecCCCEEEE-Ee-CCeEEEEEccCCC--CceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC
Q 010256 343 SISDIKFARNGRHILS-RD-YMTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~-~~-~~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (514)
.+..++|+|||++|++ .. ++.|.+|++...+ +.+..+..+... +..++|+|||++|++++.
T Consensus 241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDF---------------PRDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSC---------------CCEEEECTTSSEEEEEET
T ss_pred cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCC---------------cCeEEECCCCCEEEEEEc
Confidence 5888999999998855 44 4999999997422 223333332211 128999999998888775
Q ss_pred -CCcEEEEec--CCC
Q 010256 419 -SNLFRVFGC--SEG 430 (514)
Q Consensus 419 -dg~i~iwd~--~~~ 430 (514)
++.|.+|++ .++
T Consensus 306 ~~~~v~v~~~d~~tg 320 (347)
T 3hfq_A 306 NTDNATLYARDLTSG 320 (347)
T ss_dssp TTTEEEEEEECTTTC
T ss_pred CCCcEEEEEEeCCCC
Confidence 489999954 455
No 146
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=2.9e-20 Score=171.36 Aligned_cols=272 Identities=7% Similarity=0.039 Sum_probs=179.1
Q ss_pred CcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCC
Q 010256 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (514)
Q Consensus 126 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (514)
+..+++.+.++.|++||+.+++.......... .+ .++|+|+|+.+ +++...++
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~---------------~~-~~~~s~dg~~l-----------~~~~~~~~ 62 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYD---------------FV-DTAITSDCSNV-----------VVTSDFCQ 62 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCC---------------EE-EEEECSSSCEE-----------EEEESTTC
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCC---------------cc-eEEEcCCCCEE-----------EEEeCCCC
Confidence 34577788899999999999987666554311 12 67899999865 14444578
Q ss_pred cEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cC-C--eEEEEeccCCCceeeeeccCCCccccc
Q 010256 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-L--RINLWNLEISNQSFNIVDVKPANMEDL 281 (514)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 281 (514)
.|.+|| ....+. .... ...+..+..+++|+|++++++++ .+ + .|.+||+++++....+ . .
T Consensus 63 ~i~~~d-~~~~~~-----~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~--------~-~ 126 (331)
T 3u4y_A 63 TLVQIE-TQLEPP-----KVVA-IQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTI--------P-I 126 (331)
T ss_dssp EEEEEE-CSSSSC-----EEEE-EEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEE--------E-C
T ss_pred eEEEEE-CCCCce-----eEEe-cccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEE--------E-C
Confidence 999998 332221 0111 23444555559999999999966 44 3 9999999865543221 1 2
Q ss_pred CCceEEEEEecCCCcEEEEEecCCe-EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-
Q 010256 282 TEVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR- 359 (514)
Q Consensus 282 ~~~i~~v~~~p~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~- 359 (514)
...+.+++|+|+|..++++...++. |.+|++........ .... ..........++|+|+|++++.+
T Consensus 127 ~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~----~~~~--------~~~~~~~~~~~~~spdg~~l~v~~ 194 (331)
T 3u4y_A 127 PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD----TGQE--------FISGGTRPFNITFTPDGNFAFVAN 194 (331)
T ss_dssp CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE----EEEE--------EECSSSSEEEEEECTTSSEEEEEE
T ss_pred CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee----cCCc--------cccCCCCccceEECCCCCEEEEEe
Confidence 3456899999999445566666688 99999976432110 0000 00112457899999999977654
Q ss_pred e-CCeEEEEEccCCCCc---eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe-CCCcEEEEecCCCceee
Q 010256 360 D-YMTLKLWDINMDSGP---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAES 434 (514)
Q Consensus 360 ~-~~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~ 434 (514)
. ++.|.+||+.+ ++. +..+..+.. +..++|+|||++|+.++ .++.|.+||+.+++...
T Consensus 195 ~~~~~v~v~d~~~-~~~~~~~~~~~~~~~----------------~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~ 257 (331)
T 3u4y_A 195 LIGNSIGILETQN-PENITLLNAVGTNNL----------------PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSF 257 (331)
T ss_dssp TTTTEEEEEECSS-TTSCEEEEEEECSSC----------------CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEE
T ss_pred CCCCeEEEEECCC-CcccceeeeccCCCC----------------CceEEECCCCCEEEEEEcCCCEEEEEECCCCceee
Confidence 3 48999999987 676 555554322 12799999999776554 57889999999874411
Q ss_pred -eeecCC----Ccc---eeEEEECCCCCceeec-CCCCeEEEee
Q 010256 435 -TTLEAS----KNP---MRRQVQTPSRPSRPLG-SLSGVVRRVK 469 (514)
Q Consensus 435 -~~~~~~----~~~---v~~~~~~~~~~~l~s~-s~d~~v~i~~ 469 (514)
..+..+ ..+ ...++|+|++++|+++ ..++.|.+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 258 VKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp EEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 222221 222 2458999999987554 5567898843
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=9e-21 Score=175.24 Aligned_cols=273 Identities=10% Similarity=0.087 Sum_probs=181.9
Q ss_pred CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeec-cCCCcccccccccccc-ceeEEEEeeCCC
Q 010256 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKSLEIEE-KINKIRWCQSAN 125 (514)
Q Consensus 48 ~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~-~v~~i~~~~~~~ 125 (514)
++|++++.++.|.+||..+++. ...+. ++. . .+..++| +++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~~------------~~~~~~~~~--s~d 44 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV-----------------------DKVITIADA------------GPTPMVPMV--APG 44 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE-----------------------EEEEECTTC------------TTCCCCEEE--CTT
T ss_pred cEEEEcCCCCeEEEEECCCCcE-----------------------EEEEEcCCC------------CCCccceEE--cCC
Confidence 4789999999999999887653 22222 121 1 4788899 567
Q ss_pred CcEEE-EeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCC--
Q 010256 126 SALYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG-- 202 (514)
Q Consensus 126 ~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-- 202 (514)
+++++ ++..++.|.+||+.+++............ ....+..++|+|+|+.+ +++.
T Consensus 45 g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~----------~~~~~~~~~~s~dg~~l------------~~~~~~ 102 (337)
T 1pby_B 45 GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE----------RVKSLFGAALSPDGKTL------------AIYESP 102 (337)
T ss_dssp SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE----------EEECTTCEEECTTSSEE------------EEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc----------ccccccceEECCCCCEE------------EEEecc
Confidence 76654 55678999999999988665544321000 00012378999999877 5553
Q ss_pred ----------CCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeec
Q 010256 203 ----------GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 203 ----------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~ 272 (514)
.++.|.+|| +...+ ....+ . ....+.+++|+|++++|+++ ++.|.+||+.+++....+ .
T Consensus 103 ~~~~~~~~~~~~~~i~v~d-~~~~~------~~~~~-~-~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~-~ 171 (337)
T 1pby_B 103 VRLELTHFEVQPTRVALYD-AETLS------RRKAF-E-APRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDK-P 171 (337)
T ss_dssp EEECSSCEEECCCEEEEEE-TTTTE------EEEEE-E-CCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEE-C
T ss_pred cccccccccccCceEEEEE-CCCCc------EEEEE-e-CCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeee-e
Confidence 468999999 32211 11111 1 13457789999999988887 688999999866543222 1
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEe-cCC-----------------------eEEEEEcCCCccccccccceecc
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG-----------------------SIRLIDMRQSALCDTHSKLFEEQ 328 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg-----------------------~i~~wd~~~~~~~~~~~~~~~~~ 328 (514)
....... +.|+|++ ..++..+ .++ .|.+||+.+++.. .+.
T Consensus 172 -----~~~~~~~---~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-----~~~-- 235 (337)
T 1pby_B 172 -----IQSWEAE---TYAQPDV-LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-----MRE-- 235 (337)
T ss_dssp -----STTTTTT---TBCCCBC-CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-----EEE--
T ss_pred -----ccccCCC---ceeCCCc-cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-----Eee--
Confidence 1111122 2678888 4443333 233 4688998887642 111
Q ss_pred CCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC
Q 010256 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (514)
+..+...+.+++|+|+|++++++ ++.|.+||+.+ ++.+..+..+.. +.+++|+|
T Consensus 236 --------~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~----------------~~~~~~s~ 289 (337)
T 1pby_B 236 --------VRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRVPLPHS----------------YYSVNVST 289 (337)
T ss_dssp --------EEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEEECSSC----------------CCEEEECT
T ss_pred --------cCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCC-CcCcceecCCCc----------------eeeEEECC
Confidence 12233567889999999999988 68999999986 666666554322 22899999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCce
Q 010256 409 DGGRVATGSYSNLFRVFGCSEGSA 432 (514)
Q Consensus 409 ~~~~l~s~~~dg~i~iwd~~~~~~ 432 (514)
||++|++++.++.|++||+.+++.
T Consensus 290 dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 290 DGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp TSCEEEEESBSSEEEEEETTTCCE
T ss_pred CCCEEEEEcCCCcEEEEECcCCcE
Confidence 999999999999999999998744
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=1.2e-20 Score=193.29 Aligned_cols=289 Identities=9% Similarity=0.035 Sum_probs=179.9
Q ss_pred ceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCcc---CeEEEEECCCCCEEEEe-
Q 010256 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY---HINSISNNSDGETFISA- 251 (514)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~- 251 (514)
.++|+|||+.+ ++ +.++.|++|| ....+. ... +..|.. .|.+++|+|||++|+++
T Consensus 21 ~~~~spdg~~~------------~~-~~dg~i~~~d-~~~g~~------~~~-~~~~~~~~~~v~~~~~SpDg~~l~~~~ 79 (723)
T 1xfd_A 21 EAKWISDTEFI------------YR-EQKGTVRLWN-VETNTS------TVL-IEGKKIESLRAIRYEISPDREYALFSY 79 (723)
T ss_dssp CCCBSSSSCBC------------CC-CSSSCEEEBC-GGGCCC------EEE-ECTTTTTTTTCSEEEECTTSSEEEEEE
T ss_pred ccEEcCCCcEE------------EE-eCCCCEEEEE-CCCCcE------EEE-eccccccccccceEEECCCCCEEEEEe
Confidence 78999999965 55 6889999999 333221 111 234443 48999999999999988
Q ss_pred cC---------CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccc
Q 010256 252 DD---------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (514)
Q Consensus 252 ~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 322 (514)
.+ +.+++||+.+++. ..+ .....+...+..++|+||| +.|++++. +.|++||+.+++..
T Consensus 80 ~~~~~~~~~~~~~i~~~d~~~~~~-~~l-----~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~---- 147 (723)
T 1xfd_A 80 NVEPIYQHSYTGYYVLSKIPHGDP-QSL-----DPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAI---- 147 (723)
T ss_dssp SCCCCSSSCCCSEEEEEESSSCCC-EEC-----CCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCE----
T ss_pred cCccceeecceeeEEEEECCCCce-Eec-----cCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceE----
Confidence 53 7899999986653 211 1223455568899999999 78888776 79999999887642
Q ss_pred cceeccCCCCccceeeccc---------cceeEEEEecCCCEEEEEeC-C------------------------------
Q 010256 323 KLFEEQEAPGTRSFFTEII---------ASISDIKFARNGRHILSRDY-M------------------------------ 362 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~---------~~i~~~~~s~~g~~l~~~~~-~------------------------------ 362 (514)
+....+.. ...+.++. +.+.+++|||||+.|+.++. +
T Consensus 148 ~~~~~~~~---~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 224 (723)
T 1xfd_A 148 RVVSTGKE---GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE 224 (723)
T ss_dssp EEECCCBT---TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC
T ss_pred EEecCCCC---CceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC
Confidence 11111110 00011111 13478999999999998642 1
Q ss_pred ----eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC----CCcEEEEecCCCceee
Q 010256 363 ----TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY----SNLFRVFGCSEGSAES 434 (514)
Q Consensus 363 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~ 434 (514)
.|++||+.+ ++....+..+.... ..-..+..++|+|||++|++.+. +..|++||+.+++...
T Consensus 225 ~~~~~l~~~d~~~-~~~~~~l~~~~~~~---------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~ 294 (723)
T 1xfd_A 225 NPSISLHVIGLNG-PTHDLEMMPPDDPR---------MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK 294 (723)
T ss_dssp CCEEEEEEEESSS-SCCCEECCCCCCGG---------GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred CCeeEEEEEECCC-CceeEEeeCCccCC---------CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE
Confidence 688888876 54444444331100 00112448999999999877653 3579999999875442
Q ss_pred eeecCCCcce----eEEEECCCCCceeec--CCCC----eEEE--ee---CCCCCccccCCcccccccceEE-EEEcCCC
Q 010256 435 TTLEASKNPM----RRQVQTPSRPSRPLG--SLSG----VVRR--VK---GADNSALDANGNAFDFSMKLLH-LAWHPSE 498 (514)
Q Consensus 435 ~~~~~~~~~v----~~~~~~~~~~~l~s~--s~d~----~v~i--~~---~~~~~~~~~~~~~~~~~~~v~~-~~~spd~ 498 (514)
.....+...+ ..+.|+|||+.|+.. ..++ ..++ ++ +.... ...........+.. ++|+|||
T Consensus 295 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~l~~~~~~~~~~~~~spdg 371 (723)
T 1xfd_A 295 KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND---NIQSITSGDWDVTKILAYDEKG 371 (723)
T ss_dssp EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC---CCCBSCCSSSCEEEEEEEETTT
T ss_pred EEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc---ceeEeecCCeEEEeeeEEcCCC
Confidence 2222333443 378999999988754 4566 4444 33 22100 00011112334444 6999999
Q ss_pred CEEEEEe-c---CcEEEEe
Q 010256 499 NSIACAA-S---NSLYMYY 513 (514)
Q Consensus 499 ~~l~~~~-~---~~~~i~~ 513 (514)
+.|+..+ + ....||.
T Consensus 372 ~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 372 NKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp TEEEEEESSSCTTCCEEEE
T ss_pred CEEEEEEcCCCCcceEEEE
Confidence 9998655 3 4566764
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=4.6e-21 Score=190.88 Aligned_cols=269 Identities=13% Similarity=0.034 Sum_probs=178.8
Q ss_pred cccceEEEEEcCCCCeEEEecC-CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
+..+|.+++|+|||++||+++. ||+++||++.+++. ..+..|. .
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~------------------------~~lt~~~-----------~ 64 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET------------------------VKLNREP-----------I 64 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE------------------------EECCSSC-----------C
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc------------------------Eeeeccc-----------c
Confidence 3567999999999999999886 99999999865542 1222332 0
Q ss_pred cceeEEEEeeCCCCcEEEEeeC---CCeEEEEEcCc---cEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 113 EKINKIRWCQSANSALYLLSTN---DKTIKLWKVQE---KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~---d~~i~iw~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
..+..+.|+ ++ +++++++. +...++|.+.. +....
T Consensus 65 ~~~~~~~~s--pd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~------------------------------------ 105 (582)
T 3o4h_A 65 NSVLDPHYG--VG-RVILVRDVSKGAEQHALFKVNTSRPGEEQR------------------------------------ 105 (582)
T ss_dssp SEECEECTT--CS-EEEEEEECSTTSCCEEEEEEETTSTTCCEE------------------------------------
T ss_pred cccccccCC--CC-eEEEEeccCCCCcceEEEEEeccCCCcccc------------------------------------
Confidence 468899994 55 67777664 45566665432 11000
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCC--EEEEecCCeEEEEeccCC
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE--TFISADDLRINLWNLEIS 264 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~d~~i~iwd~~~~ 264 (514)
+ ... ..+...+|+|+++ .++++.++.+.+||+.++
T Consensus 106 --------------------------l---------------~~~--~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g 142 (582)
T 3o4h_A 106 --------------------------L---------------EAV--KPMRILSGVDTGEAVVFTGATEDRVALYALDGG 142 (582)
T ss_dssp --------------------------C---------------TTS--CSBEEEEEEECSSCEEEEEECSSCEEEEEEETT
T ss_pred --------------------------c---------------cCC--CCceeeeeCCCCCeEEEEecCCCCceEEEccCC
Confidence 0 000 1122456777764 455555555559999865
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC----CeEEEEEcCCCccccccccceeccCCCCccceeecc
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (514)
+.. .+ ..+.. .+++|+||| ++|++++.+ +.|++||+.+++.. . +..|
T Consensus 143 ~~~-~l--------~~~~~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~~-----~------------l~~~ 193 (582)
T 3o4h_A 143 GLR-EL--------ARLPG--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGLR-----V------------FDSG 193 (582)
T ss_dssp EEE-EE--------EEESS--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCCE-----E------------ECCS
T ss_pred cEE-Ee--------ecCCC--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCce-----E------------eecC
Confidence 432 22 12222 789999999 889988777 78999999887641 1 3344
Q ss_pred ccceeEEEEecCCCEEEEEeC-C--eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe
Q 010256 341 IASISDIKFARNGRHILSRDY-M--TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (514)
Q Consensus 341 ~~~i~~~~~s~~g~~l~~~~~-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (514)
...+..++|||||+.|++++. + .|++||+.+ ++.. .+..+........ ..+....+|+|||.++++++
T Consensus 194 ~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~~~~~~~~~~-------~~~~~~~~~spdg~~~~~~~ 264 (582)
T 3o4h_A 194 EGSFSSASISPGMKVTAGLETAREARLVTVDPRD-GSVE-DLELPSKDFSSYR-------PTAITWLGYLPDGRLAVVAR 264 (582)
T ss_dssp SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT-CCEE-ECCCSCSHHHHHC-------CSEEEEEEECTTSCEEEEEE
T ss_pred CCccccceECCCCCEEEEccCCCeeEEEEEcCCC-CcEE-EccCCCcChhhhh-------hccccceeEcCCCcEEEEEE
Confidence 567899999999999997654 6 899999986 5555 5554443221000 00001233999999999999
Q ss_pred CCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCe
Q 010256 418 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (514)
Q Consensus 418 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~ 464 (514)
.|+.+++|++ ++.. . .....+..+.++ +++++++++.+.+
T Consensus 265 ~~g~~~l~~~--g~~~-~---~~~~~v~~~~~s-dg~~l~~~s~~~~ 304 (582)
T 3o4h_A 265 REGRSAVFID--GERV-E---APQGNHGRVVLW-RGKLVTSHTSLST 304 (582)
T ss_dssp ETTEEEEEET--TEEE-C---CCSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred cCCcEEEEEE--CCee-c---cCCCceEEEEec-CCEEEEEEcCCCC
Confidence 9999999999 5332 2 344678899999 9999988887754
No 150
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=1.2e-20 Score=174.32 Aligned_cols=233 Identities=13% Similarity=0.076 Sum_probs=159.5
Q ss_pred eEEEEECCCCCEEEE-e-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-----------
Q 010256 236 INSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS----------- 302 (514)
Q Consensus 236 v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~----------- 302 (514)
+..++|+|+++.++. + .++.|.+||+.+++....+ .... ...+...+..++|+|++ +.+++++
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~-~~~~--~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~ 111 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI-DLST--PEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFE 111 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEE-ECCB--TTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEE
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeE-EcCC--cccccccccceEECCCC-CEEEEEeccccccccccc
Confidence 567889999987654 4 6899999999866544322 1100 00012256789999999 7777775
Q ss_pred -cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeee
Q 010256 303 -SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQV 381 (514)
Q Consensus 303 -~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~ 381 (514)
.++.|.+||+.+++.. ..+... ..+.+++|+|+|++|+++ ++.|.+||+.+ ++.+..+..
T Consensus 112 ~~~~~i~v~d~~~~~~~----~~~~~~-------------~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~-~~~~~~~~~ 172 (337)
T 1pby_B 112 VQPTRVALYDAETLSRR----KAFEAP-------------RQITMLAWARDGSKLYGL-GRDLHVMDPEA-GTLVEDKPI 172 (337)
T ss_dssp ECCCEEEEEETTTTEEE----EEEECC-------------SSCCCEEECTTSSCEEEE-SSSEEEEETTT-TEEEEEECS
T ss_pred ccCceEEEEECCCCcEE----EEEeCC-------------CCcceeEECCCCCEEEEe-CCeEEEEECCC-CcEeeeeec
Confidence 5799999999887642 222221 357789999999988887 67899999986 666555543
Q ss_pred ccccccccccccccCCccceeeEEEcCCCCEEEEEeCC-C-----------------------cEEEEecCCCceeeeee
Q 010256 382 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-N-----------------------LFRVFGCSEGSAESTTL 437 (514)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g-----------------------~i~iwd~~~~~~~~~~~ 437 (514)
+.... .+.|+|||++|+..+.+ + .|.+||+.+++.....+
T Consensus 173 ~~~~~----------------~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 236 (337)
T 1pby_B 173 QSWEA----------------ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236 (337)
T ss_dssp TTTTT----------------TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred cccCC----------------CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeec
Confidence 33111 34678888866544432 2 46899999876544455
Q ss_pred cCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 438 EASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 438 ~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
..+...+..++++|++++++++ ++.|.+++..... .. ..+.....+.+++|+||+++|++++ ++.+.+|.
T Consensus 237 ~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~---~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA---SI-KRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE---EE-EEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc---Cc-ceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 5666778889999999999888 7888884432211 00 1122345678999999999888776 56788886
No 151
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=2.2e-19 Score=167.04 Aligned_cols=234 Identities=10% Similarity=0.038 Sum_probs=154.7
Q ss_pred eEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcc--cccCCceEEEEEecCCCcEEEEEe--cCCeEEE
Q 010256 236 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANM--EDLTEVITSAEFHPTHCNMLAYSS--SKGSIRL 309 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~v~~~p~~~~~l~~~~--~dg~i~~ 309 (514)
+..++|+|+++.++.+ .++.|.+||.++++....+ ....... ......+.+++|+|++ +.+++++ .++.|.+
T Consensus 91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRL-VLDDRKRTEEVRPLQPRELVADDAT-NTVYISGIGKESVIWV 168 (353)
T ss_dssp CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-ESCCCCCCSSCCCCEEEEEEEETTT-TEEEEEEESSSCEEEE
T ss_pred cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEE-ecCCCccccccCCCCCceEEECCCC-CEEEEEecCCCceEEE
Confidence 4567899999866554 6899999999876544322 1100000 0011237889999999 6555555 4789999
Q ss_pred EEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccc
Q 010256 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPK 388 (514)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~ 388 (514)
||+.+++.. ..+.. +...+.+++|+|+|+++++++. +.|.+||..+ ++.+..+.......
T Consensus 169 ~d~~~~~~~----~~~~~------------~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~-- 229 (353)
T 3vgz_A 169 VDGGNIKLK----TAIQN------------TGKMSTGLALDSEGKRLYTTNADGELITIDTAD-NKILSRKKLLDDGK-- 229 (353)
T ss_dssp EETTTTEEE----EEECC------------CCTTCCCCEEETTTTEEEEECTTSEEEEEETTT-TEEEEEEECCCSSS--
T ss_pred EcCCCCceE----EEecC------------CCCccceEEECCCCCEEEEEcCCCeEEEEECCC-CeEEEEEEcCCCCC--
Confidence 999887653 22221 1234778999999999888765 9999999987 66666655422100
Q ss_pred cccccccCCccceeeEEEcCCCCEEEEEeC-CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCce-eecCCCCeEE
Q 010256 389 LCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR-PLGSLSGVVR 466 (514)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~s~d~~v~ 466 (514)
...+..++|+|+|++|+.++. ++.|.+||+.+++.. ..+.... ...++++|+++++ ++...++.|.
T Consensus 230 ---------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~-~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~ 297 (353)
T 3vgz_A 230 ---------EHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL-AKVAAPE--SLAVLFNPARNEAYVTHRQAGKVS 297 (353)
T ss_dssp ---------CCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE-EEEECSS--CCCEEEETTTTEEEEEETTTTEEE
T ss_pred ---------CcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE-EEEEcCC--CceEEECCCCCEEEEEECCCCeEE
Confidence 001237999999998776654 599999999887543 3444332 2568999999955 5555789999
Q ss_pred EeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEec
Q 010256 467 RVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS 506 (514)
Q Consensus 467 i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~ 506 (514)
+++..... .. ..+.....+..++|+||+++|+++..
T Consensus 298 ~~d~~~~~---~~-~~~~~~~~~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 298 VIDAKSYK---VV-KTFDTPTHPNSLALSADGKTLYVSVK 333 (353)
T ss_dssp EEETTTTE---EE-EEEECCSEEEEEEECTTSCEEEEEEE
T ss_pred EEECCCCe---EE-EEEecCCCCCeEEEcCCCCEEEEEEc
Confidence 95432211 11 11223457899999999998876653
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=7.6e-19 Score=163.01 Aligned_cols=214 Identities=9% Similarity=0.090 Sum_probs=134.7
Q ss_pred cCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCC----CcccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010256 234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKP----ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 307 (514)
..+..++|+|++++|+++ .++.|.+|++........+..... .........+.+++|+|++ +++++...++.|
T Consensus 86 ~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~v 164 (347)
T 3hfq_A 86 TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSDKV 164 (347)
T ss_dssp CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTTEE
T ss_pred CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCCEE
Confidence 456789999999987776 689999999964333222111000 0001123458899999999 677777778999
Q ss_pred EEEEcC-CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-eC-CeEEEEEccCCCCceeeeeeccc
Q 010256 308 RLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DY-MTLKLWDINMDSGPVATFQVHEH 384 (514)
Q Consensus 308 ~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~-~~i~iwd~~~~~~~~~~~~~~~~ 384 (514)
.+||+. ++.... ...+... ....+..++|+|||+++++. .. +.|.+|++......+........
T Consensus 165 ~~~~~~~~g~~~~--~~~~~~~-----------~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 231 (347)
T 3hfq_A 165 YVYNVSDAGQLSE--QSVLTME-----------AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT 231 (347)
T ss_dssp EEEEECTTSCEEE--EEEEECC-----------TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred EEEEECCCCcEEE--eeeEEcC-----------CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee
Confidence 999998 443210 1111111 11256789999999977764 33 89999998842122211111000
Q ss_pred cccccccccccCCccceeeEEEcCCCCEEE-EEeCCCcEEEEecCCCc--eeeeeecCCCcceeEEEECCCCCceeecCC
Q 010256 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGS--AESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
.... + .....+..++|+|||++|+ +...++.|.+|++.... .....+..+...+..++|+|++++|++++.
T Consensus 232 ~~~~----~--~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 232 IPAD----Y--TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp SCTT----C--CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEET
T ss_pred cCCC----C--CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEc
Confidence 0000 0 0001134799999999874 55678999999997322 223455566667889999999998877765
Q ss_pred -CCeEEE
Q 010256 462 -SGVVRR 467 (514)
Q Consensus 462 -d~~v~i 467 (514)
++.+.+
T Consensus 306 ~~~~v~v 312 (347)
T 3hfq_A 306 NTDNATL 312 (347)
T ss_dssp TTTEEEE
T ss_pred CCCcEEE
Confidence 488888
No 153
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=1.3e-18 Score=177.84 Aligned_cols=326 Identities=9% Similarity=0.059 Sum_probs=190.7
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccccee
Q 010256 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (514)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (514)
...+++|+|||++|+++ ||.|++||+.+++.. ..+.+|... .......
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~-----------------------~~~~~~~~~-------~~~~~~~ 65 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS-----------------------VFLENSTFD-------EFGHSIN 65 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE-----------------------EEECTTTTT-------TCCSCCC
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceE-----------------------EEEechhhh-------hhccccc
Confidence 46689999999999986 899999999887632 334444310 0001234
Q ss_pred EEEEeeCCCCcEEEEeeCC---------CeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 117 KIRWCQSANSALYLLSTND---------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 117 ~i~~~~~~~~~~l~s~~~d---------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
.+.| ++||++|+.++.+ +.+.+||+.+++...
T Consensus 66 ~~~~--Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~------------------------------------- 106 (740)
T 4a5s_A 66 DYSI--SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT------------------------------------- 106 (740)
T ss_dssp EEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-------------------------------------
T ss_pred ceEE--CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-------------------------------------
Confidence 5778 6788899988876 455688887775321
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCce
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQS 267 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~ 267 (514)
+..|...+...+|||||+.|+.+.++.|++|++.++...
T Consensus 107 -----------------------------------------l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 107 -----------------------------------------EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSY 145 (740)
T ss_dssp -----------------------------------------SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCE
T ss_pred -----------------------------------------cccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceE
Confidence 123445688999999999999998899999999865432
Q ss_pred eeeeccCCCcccccCCce-----------------EEEEEecCCCcEEEEEecCCe-E----------------------
Q 010256 268 FNIVDVKPANMEDLTEVI-----------------TSAEFHPTHCNMLAYSSSKGS-I---------------------- 307 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i-----------------~~v~~~p~~~~~l~~~~~dg~-i---------------------- 307 (514)
++ +..++...+ ..+.|+||| +.|+.++.|.. +
T Consensus 146 -~l------t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~ 217 (740)
T 4a5s_A 146 -RI------TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP 217 (740)
T ss_dssp -EC------CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEE
T ss_pred -EE------cCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeec
Confidence 22 222222222 358999999 78887764332 4
Q ss_pred -------------EEEEcCC---CccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe----C-CeEEE
Q 010256 308 -------------RLIDMRQ---SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----Y-MTLKL 366 (514)
Q Consensus 308 -------------~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~-~~i~i 366 (514)
++||+.+ ++... ...+... ..+.+|...+..++|+|||+.++... + ..|.+
T Consensus 218 yp~~G~~~~~~~l~v~d~~~~~~~~~~~--~~~l~~~------~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~ 289 (740)
T 4a5s_A 218 YPKAGAVNPTVKFFVVNTDSLSSVTNAT--SIQITAP------ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDI 289 (740)
T ss_dssp CCBTTSCCCEEEEEEEETTSCCSSSCCC--EEEECCC------HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEE
T ss_pred CCCCcCcCCeeEEEEEECCCCCCCCcce--EEEecCC------ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEE
Confidence 4444444 31000 0000000 00113566799999999999776531 2 47999
Q ss_pred EEccCCCC----c--eeee--eeccccccccccccccCCccceeeEEEcCCCCEEE-EEeC-C--CcEEEEecCCCceee
Q 010256 367 WDINMDSG----P--VATF--QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSY-S--NLFRVFGCSEGSAES 434 (514)
Q Consensus 367 wd~~~~~~----~--~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~-d--g~i~iwd~~~~~~~~ 434 (514)
||+.+ ++ + +..+ ..+...+.. .....++|+|||+.|+ ..+. + ..|++||+.++...
T Consensus 290 ~d~~t-g~~~~~~~~~~~l~~~~~~~~v~~----------~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~- 357 (740)
T 4a5s_A 290 CDYDE-SSGRWNCLVARQHIEMSTTGWVGR----------FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT- 357 (740)
T ss_dssp EEEET-TTTEEEECGGGCEEEECSSSCSSS----------SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-
T ss_pred EECCC-CccccceeEEEEeeeccCCceEcc----------CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-
Confidence 99987 55 1 2222 223322110 0011678999999877 6653 3 46888898865332
Q ss_pred eeecCCCcceeEEEECCCCCce-eecCC----C--CeEEEee--CCCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 435 TTLEASKNPMRRQVQTPSRPSR-PLGSL----S--GVVRRVK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 435 ~~~~~~~~~v~~~~~~~~~~~l-~s~s~----d--~~v~i~~--~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
.+......+..+.. ++++.| .+++. . ..+..++ +.... ..+..........+..+.||||+++++...
T Consensus 358 -~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~-~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~ 434 (740)
T 4a5s_A 358 -FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKV-TCLSCELNPERCQYYSVSFSKEAKYYQLRC 434 (740)
T ss_dssp -ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEE-EESSTTTSTTTBCBEEEEECTTSSEEEEEE
T ss_pred -ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcc-eeeccccCCCCCceEEEEECCCCCEEEEEe
Confidence 33333444444432 335544 44433 1 2343322 11110 001100011235788999999999888554
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=7.9e-20 Score=181.97 Aligned_cols=259 Identities=9% Similarity=0.020 Sum_probs=177.8
Q ss_pred cceeEEEEeeCCCCcEEEEeeC-CCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 113 EKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
.+|.+++|+ +||++|++++. ||+++||++.+++...+.
T Consensus 22 ~~~~~~~~~--~DG~~la~~s~~~g~~~lw~~~~g~~~~lt--------------------------------------- 60 (582)
T 3o4h_A 22 VEKYSLQGV--VDGDKLLVVGFSEGSVNAYLYDGGETVKLN--------------------------------------- 60 (582)
T ss_dssp SCEEEEEEE--ETTTEEEEEEEETTEEEEEEEETTEEEECC---------------------------------------
T ss_pred cchheeecC--CCCCeEEEEEccCCceeEEEEcCCCcEeee---------------------------------------
Confidence 569999994 57889998876 999999998665532211
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-c---CCeEEEEeccC--CC
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D---DLRINLWNLEI--SN 265 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~--~~ 265 (514)
..+...+..++|+|| ++++++ . +...++|.+.. ..
T Consensus 61 --------------------------------------~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g 101 (582)
T 3o4h_A 61 --------------------------------------REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPG 101 (582)
T ss_dssp --------------------------------------SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTT
T ss_pred --------------------------------------cccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCC
Confidence 122245778899999 666665 3 45566766543 22
Q ss_pred ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccccee
Q 010256 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (514)
....+ .. ...+...+|+|++...+++.+.++.+.+||+.+++.. .+ ..+.. .
T Consensus 102 ~~~~l--------~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~-----~l------------~~~~~--~ 153 (582)
T 3o4h_A 102 EEQRL--------EA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR-----EL------------ARLPG--F 153 (582)
T ss_dssp CCEEC--------TT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE-----EE------------EEESS--C
T ss_pred ccccc--------cC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE-----Ee------------ecCCC--c
Confidence 22221 11 1224466888888544555555555669999887641 11 11112 7
Q ss_pred EEEEecCCCEEEEE-eC----CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCC
Q 010256 346 DIKFARNGRHILSR-DY----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (514)
Q Consensus 346 ~~~~s~~g~~l~~~-~~----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (514)
+++|||||++|+++ .+ ..|++||+.+ ++. ..+..+... +..++|||||++|+++..++
T Consensus 154 ~~~~spDG~~la~~~~~~~~~~~i~~~d~~~-g~~-~~l~~~~~~---------------~~~~~~SpDG~~l~~~~~~~ 216 (582)
T 3o4h_A 154 GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-GGL-RVFDSGEGS---------------FSSASISPGMKVTAGLETAR 216 (582)
T ss_dssp EEEEEEETTEEEEEEEEETTEEEEEEEETTT-CCC-EEECCSSCE---------------EEEEEECTTSCEEEEEECSS
T ss_pred eEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-CCc-eEeecCCCc---------------cccceECCCCCEEEEccCCC
Confidence 89999999999964 33 6799999885 443 355555433 23899999999999888888
Q ss_pred --cEEEEecCCCceeeeeecCCCcceeEEE--------ECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceE
Q 010256 421 --LFRVFGCSEGSAESTTLEASKNPMRRQV--------QTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLL 490 (514)
Q Consensus 421 --~i~iwd~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~ 490 (514)
.|++||+.+++.. .+..|...+..+. |+||++++++++.|+.+++..-.+. .. .....|.
T Consensus 217 ~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~g~~----~~----~~~~~v~ 286 (582)
T 3o4h_A 217 EARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFIDGER----VE----APQGNHG 286 (582)
T ss_dssp CEEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEETTEE----EC----CCSSEEE
T ss_pred eeEEEEEcCCCCcEE--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEECCe----ec----cCCCceE
Confidence 8999999987544 6777877777777 9999999999999999999332111 11 2346789
Q ss_pred EEEEcCCCCEEEEEecC
Q 010256 491 HLAWHPSENSIACAASN 507 (514)
Q Consensus 491 ~~~~spd~~~l~~~~~~ 507 (514)
+++|+ |++++++++.+
T Consensus 287 ~~~~s-dg~~l~~~s~~ 302 (582)
T 3o4h_A 287 RVVLW-RGKLVTSHTSL 302 (582)
T ss_dssp EEEEE-TTEEEEEEEET
T ss_pred EEEec-CCEEEEEEcCC
Confidence 99999 99998876643
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.85 E-value=2.2e-18 Score=160.75 Aligned_cols=290 Identities=10% Similarity=0.073 Sum_probs=171.4
Q ss_pred cccceEEEEEcCCCCeEEEecCC----CeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRG----GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
+...+..++|+|||++|++++.+ +.|.+|++..... ....+.....+.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-------------------~~~~~~~~~~~~--------- 99 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-------------------TLHLLNTQKTMG--------- 99 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-------------------EEEEEEEEECSS---------
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-------------------cEEEeeEeccCC---------
Confidence 67788899999999999998875 7999999875310 011222333233
Q ss_pred ccccceeEEEEeeCCCCcEEEEee-CCCeEEEEEcCccEEE-EEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
.....+++ +++++++++ .++.|.+|++...... ..... ....+..
T Consensus 100 ---~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~------------------------~~~~g~~-- 146 (361)
T 3scy_A 100 ---ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDV------------------------IEFKGSG-- 146 (361)
T ss_dssp ---SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEE------------------------EECCCCC--
T ss_pred ---CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCccccee------------------------EEccCCC--
Confidence 34566666 556777665 6889999998743211 00000 0000000
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCC
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISN 265 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~ 265 (514)
... ...+...+.+++|+|+|++++++ .++.|.+|++....
T Consensus 147 ----------------------------------~~~----~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~ 188 (361)
T 3scy_A 147 ----------------------------------PDK----ERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNA 188 (361)
T ss_dssp ----------------------------------SCT----TTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTC
T ss_pred ----------------------------------CCc----cccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCC
Confidence 000 01233457889999999976655 68999999987544
Q ss_pred c----e-eeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEEcCCCccccccccceeccCCCCccceeec
Q 010256 266 Q----S-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (514)
Q Consensus 266 ~----~-~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (514)
. . +................+..++|+|++ +++++++ .++.|.+||+.++.... ...+.. ...
T Consensus 189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~--~~~~~~---------~~~ 256 (361)
T 3scy_A 189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDE--IQTVAA---------DTV 256 (361)
T ss_dssp CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEE--EEEEES---------CSS
T ss_pred CcccccceeecccccceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEE--eEEEec---------CCC
Confidence 2 1 100000000111234567899999999 6666666 68999999998764311 111111 111
Q ss_pred cccceeEEEEecCCCEEEEE-e--CCeEEEEEccCC-CC--ceeeeeeccccccccccccccCCccceeeEEEcCCCCEE
Q 010256 340 IIASISDIKFARNGRHILSR-D--YMTLKLWDINMD-SG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (514)
Q Consensus 340 ~~~~i~~~~~s~~g~~l~~~-~--~~~i~iwd~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (514)
+......++|+|||++|+++ . ++.|.+|++... ++ .+..+.. ... +..++|+|||++|
T Consensus 257 ~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~---------------~~~~~~spdg~~l 320 (361)
T 3scy_A 257 NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIH---------------PRNFIITPNGKYL 320 (361)
T ss_dssp CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSC---------------CCEEEECTTSCEE
T ss_pred CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCC---------------CceEEECCCCCEE
Confidence 22346799999999988764 3 379999999631 33 2222222 111 1279999999998
Q ss_pred EEEe-CCCcEEEEec--CCCceeeeeecCCCcceeEEEEC
Q 010256 414 ATGS-YSNLFRVFGC--SEGSAESTTLEASKNPMRRQVQT 450 (514)
Q Consensus 414 ~s~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~ 450 (514)
++++ .++.|.+|++ .+++.....-..+...+.++.|.
T Consensus 321 ~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 321 LVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 8877 6789999655 45532211112233455566653
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=3.9e-19 Score=165.11 Aligned_cols=254 Identities=8% Similarity=0.045 Sum_probs=168.0
Q ss_pred EEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEE
Q 010256 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (514)
Q Consensus 40 ~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~ 119 (514)
.+++++++.++++++.++.|.+||..+++. ...+..+. ...+..++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~-----------~~~~~~~~ 49 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV-----------------------YKSCVMPD-----------KFGPGTAM 49 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE-----------------------EEEEECSS-----------CCSSCEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE-----------------------EEEEecCC-----------CCCCceeE
Confidence 457888999999999999999999887653 22332221 02477889
Q ss_pred EeeCCCCcEEE-EeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcc
Q 010256 120 WCQSANSALYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (514)
Q Consensus 120 ~~~~~~~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (514)
| ++++++++ +...++.|.+||+.+++..........+
T Consensus 50 ~--s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~---------------------------------------- 87 (349)
T 1jmx_B 50 M--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP---------------------------------------- 87 (349)
T ss_dssp E--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST----------------------------------------
T ss_pred E--CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc----------------------------------------
Confidence 9 56776655 4567899999999988755433321000
Q ss_pred cCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cC------------CeEEEEeccCCC
Q 010256 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD------------LRINLWNLEISN 265 (514)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d------------~~i~iwd~~~~~ 265 (514)
..+...+.+++|+|+|++|+++ .+ +.|.+||+.+++
T Consensus 88 -------------------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 88 -------------------------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp -------------------------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred -------------------------------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 0001235678899999988887 44 999999998643
Q ss_pred ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccC--CC------------
Q 010256 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE--AP------------ 331 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~--~~------------ 331 (514)
....+ ....+...+.+++|+|++ + +++++ +.|.+||+.+++... .+.... .+
T Consensus 137 ~~~~~------~~~~~~~~~~~~~~s~dg-~-l~~~~--~~i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 202 (349)
T 1jmx_B 137 EAKPV------RTFPMPRQVYLMRAADDG-S-LYVAG--PDIYKMDVKTGKYTV----ALPLRNWNRKGYSAPDVLYFWP 202 (349)
T ss_dssp GBCCS------EEEECCSSCCCEEECTTS-C-EEEES--SSEEEECTTTCCEEE----EECSTTCCCTTBCCCBCCCCCC
T ss_pred cccee------eeccCCCcccceeECCCC-c-EEEcc--CcEEEEeCCCCceec----cccccccCCccccCccceeeec
Confidence 22111 111133457889999999 6 44443 349999998876532 111110 00
Q ss_pred --Cc----------------------------------------cceeeccccceeEEEEec-CCCEEEEEeCCeEEEEE
Q 010256 332 --GT----------------------------------------RSFFTEIIASISDIKFAR-NGRHILSRDYMTLKLWD 368 (514)
Q Consensus 332 --~~----------------------------------------~~~~~~~~~~i~~~~~s~-~g~~l~~~~~~~i~iwd 368 (514)
.. ...+..+...+..++|+| +|++++++ ++.|.+||
T Consensus 203 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d 281 (349)
T 1jmx_B 203 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYD 281 (349)
T ss_dssp CCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEE
T ss_pred CCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEE
Confidence 00 000001123567888999 99999988 88999999
Q ss_pred ccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCce
Q 010256 369 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (514)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 432 (514)
+.+ ++.+..+..... +..++|+|+|++|++++.++.|++||+.+++.
T Consensus 282 ~~~-~~~~~~~~~~~~----------------~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 282 LKQ-RKLIKAANLDHT----------------YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp TTT-TEEEEEEECSSC----------------CCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred Ccc-CeEEEEEcCCCC----------------ccceEECCCCCEEEEecCCCeEEEEeccccce
Confidence 987 666666653322 12899999999888888899999999988743
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=2.6e-18 Score=163.26 Aligned_cols=230 Identities=10% Similarity=0.112 Sum_probs=144.2
Q ss_pred cccccceEEEEEcCCCCeEE----EecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLA----TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~----tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
+.|...|++++|+|+|++|| +|+.|+.|+|||+.+..... . ...........+.+|.
T Consensus 89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~-~-----------~~~~~~~~~~~~~~h~------- 149 (434)
T 2oit_A 89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEA-K-----------QQKRPFAYHKLLKDAG------- 149 (434)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTT-C-----------SSCCCSEEEECCCSGG-------
T ss_pred ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCC-c-----------CCcceeeeeeccCCCC-------
Confidence 45667899999999999999 88999999999987541000 0 0000011234456676
Q ss_pred ccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
..|.+++|+|. ++.+|++++.||+|++||++++.....
T Consensus 150 -----~~V~~v~~~p~-~~~~las~s~Dg~v~iwD~~~~~~~~~------------------------------------ 187 (434)
T 2oit_A 150 -----GMVIDMKWNPT-VPSMVAVCLADGSIAVLQVTETVKVCA------------------------------------ 187 (434)
T ss_dssp -----GSEEEEEECSS-CTTEEEEEETTSCEEEEEESSSEEEEE------------------------------------
T ss_pred -----CceEEEEECCC-CCCEEEEEECCCeEEEEEcCCCcceee------------------------------------
Confidence 88999999653 256999999999999999987642110
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCc
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 266 (514)
..+|...|.+++|+|+|++|++| .||+|++||++ ++.
T Consensus 188 -----------------------------------------~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~ 225 (434)
T 2oit_A 188 -----------------------------------------TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE 225 (434)
T ss_dssp -----------------------------------------EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE
T ss_pred -----------------------------------------ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc
Confidence 13466789999999999999999 99999999998 333
Q ss_pred eeeeeccCCCcccccCCceEEEEEecCCCcEEEE-EecCC------eEEEEEcCCCccccccccceeccCCCCccceeec
Q 010256 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKG------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (514)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~-~~~dg------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (514)
...+ .........|...+.++.|++++ .++++ .+.+| .+++|+++...... ...+.....+. ..+.+
T Consensus 226 ~~~~-~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~--~~~~~~~~~~~--~~~~~ 299 (434)
T 2oit_A 226 KKVI-PCPPFYESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKH--PEIFVNFMEPC--YGSCT 299 (434)
T ss_dssp EEEE-CCCTTCCTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCC--CCEEEECCCSS--CCCCS
T ss_pred cccc-cCCcccCCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCC--CcceEecccCC--CCCCC
Confidence 2221 11110111234589999999987 55543 33443 38999998653210 11111111110 00011
Q ss_pred cccceeEEEEecCCCEEEEEeC--CeEEEEEcc
Q 010256 340 IIASISDIKFARNGRHILSRDY--MTLKLWDIN 370 (514)
Q Consensus 340 ~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~ 370 (514)
...+-..+.+-++.+++++++. ..|.|....
T Consensus 300 ~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 300 ERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp SSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred CcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 1122233444477777776543 667777654
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=4e-17 Score=152.21 Aligned_cols=205 Identities=13% Similarity=0.117 Sum_probs=128.1
Q ss_pred CeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeec---c---CCCcccccCCceEEEEEecCCCcEE-EEEecCC
Q 010256 235 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVD---V---KPANMEDLTEVITSAEFHPTHCNML-AYSSSKG 305 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~---~---~~~~~~~~~~~i~~v~~~p~~~~~l-~~~~~dg 305 (514)
....+++ ++++|+++ .++.|.+|++...+....+.. . .+.....+...+.+++|+|++ +++ ++...++
T Consensus 101 ~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~ 177 (361)
T 3scy_A 101 DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG-KYLLADDLGTD 177 (361)
T ss_dssp CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS-SEEEEEETTTT
T ss_pred CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC-CEEEEEeCCCC
Confidence 4556777 77777666 689999999975443221100 0 000111223456889999999 655 4455589
Q ss_pred eEEEEEcCCCcc------cccc--ccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--CCeEEEEEccCCCCc
Q 010256 306 SIRLIDMRQSAL------CDTH--SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGP 375 (514)
Q Consensus 306 ~i~~wd~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~iwd~~~~~~~ 375 (514)
.|.+|++..... .... ..... ..+...+..++|+|+|++++++. ++.|.+||+.. ++.
T Consensus 178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~ 245 (361)
T 3scy_A 178 QIHKFNINPNANADNKEKFLTKGTPEAFK-----------VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-GML 245 (361)
T ss_dssp EEEEEEECTTCCTTTCCCCEEEEEEEEEE-----------CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-TEE
T ss_pred EEEEEEEcCCCCcccccceeeccccccee-----------cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-Cce
Confidence 999999875431 1000 00011 11124578899999999887764 49999999985 432
Q ss_pred --eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC--CCcEEEEecC--CCce-eeeeecCCCcceeEEE
Q 010256 376 --VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY--SNLFRVFGCS--EGSA-ESTTLEASKNPMRRQV 448 (514)
Q Consensus 376 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--dg~i~iwd~~--~~~~-~~~~~~~~~~~v~~~~ 448 (514)
+..+...... ......++|+|||++|+++.. ++.|.+|++. ++.. ....+.. ...+..++
T Consensus 246 ~~~~~~~~~~~~------------~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~ 312 (361)
T 3scy_A 246 DEIQTVAADTVN------------AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFI 312 (361)
T ss_dssp EEEEEEESCSSC------------CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEE
T ss_pred EEeEEEecCCCC------------CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEE
Confidence 1222111110 011237999999999876665 4899999996 3332 2233333 45678999
Q ss_pred ECCCCCceeecC-CCCeEEE
Q 010256 449 QTPSRPSRPLGS-LSGVVRR 467 (514)
Q Consensus 449 ~~~~~~~l~s~s-~d~~v~i 467 (514)
|+|++++|++++ .++.+.+
T Consensus 313 ~spdg~~l~~~~~~~~~v~v 332 (361)
T 3scy_A 313 ITPNGKYLLVACRDTNVIQI 332 (361)
T ss_dssp ECTTSCEEEEEETTTTEEEE
T ss_pred ECCCCCEEEEEECCCCCEEE
Confidence 999999887776 6788888
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=2.3e-19 Score=170.51 Aligned_cols=230 Identities=10% Similarity=0.030 Sum_probs=151.8
Q ss_pred cccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
+...++.+++++++.+|++|+.++ ++||+.......... ... + ... ... .....+.+..
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~----~~~-------~-~~~-~~~-------~~~~~~~~~~ 93 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKP----GDD-------P-NKI-VDK-------VQGLLVPMKF 93 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCT----TCC-------T-TCE-EEC-------CCCEEECCSS
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccc----ccC-------c-ccc-ccc-------CccccccCCC
Confidence 345699999999999999999888 999986432110000 000 0 000 000 0011122237
Q ss_pred ceeEEEEeeCCCCcEEE----EeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 114 KINKIRWCQSANSALYL----LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~----s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
.|.+++| ++++++|+ +++.|+.|++||+.++... ... ..+
T Consensus 94 ~v~~l~~--spdg~~lav~~~sgs~d~~v~iwd~~~~~~~-----~~~------------------------~~~----- 137 (434)
T 2oit_A 94 PIHHLAL--SCDNLTLSACMMSSEYGSIIAFFDVRTFSNE-----AKQ------------------------QKR----- 137 (434)
T ss_dssp CEEEEEE--CTTSCEEEEEEEETTTEEEEEEEEHHHHHCT-----TCS------------------------SCC-----
T ss_pred cccEEEE--cCCCCEEEEEEeccCCCceEEEEEccccccC-----CcC------------------------Ccc-----
Confidence 7999999 56788999 7889999999998764100 000 000
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCce
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
.+ .... .+.+|...|.+++|+|+ +.+|+++ .||+|++||+++....
T Consensus 138 ----------------~~---------------~~~~-~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~ 185 (434)
T 2oit_A 138 ----------------PF---------------AYHK-LLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV 185 (434)
T ss_dssp ----------------CS---------------EEEE-CCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE
T ss_pred ----------------ee---------------eeee-ccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce
Confidence 00 0001 13678899999999998 8899998 9999999999866332
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
. ...+|...|.+++|+|+| ++|++|+.||.|++||++ ++. ...+..+.. ....|...+.++
T Consensus 186 ~--------~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~----~~~~~~~~~-----~~~~~~~~v~~v 246 (434)
T 2oit_A 186 C--------ATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQE----KKVIPCPPF-----YESDHPVRVLDV 246 (434)
T ss_dssp E--------EEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCE----EEEECCCTT-----CCTTSCEEEEEE
T ss_pred e--------eccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Ccc----cccccCCcc-----cCCCCceeEEEE
Confidence 2 234578899999999998 899999999999999998 332 122222110 011234579999
Q ss_pred EEecCCCEEEEEe--CC------eEEEEEccC
Q 010256 348 KFARNGRHILSRD--YM------TLKLWDINM 371 (514)
Q Consensus 348 ~~s~~g~~l~~~~--~~------~i~iwd~~~ 371 (514)
+|++++.++++.+ +| .+++|++..
T Consensus 247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred EEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 9999998887632 22 489999985
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=1.6e-17 Score=154.90 Aligned_cols=259 Identities=9% Similarity=-0.003 Sum_probs=161.9
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcC-ccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..+..++| +++|++|++++.+ .|.+|++. +++.......... +. +..++++|+|+.+.+
T Consensus 40 ~~~~~~a~--spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-------g~-------~~~~~~spdg~~l~~--- 99 (365)
T 1jof_A 40 EPISWMTF--DHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-------GH-------PRANDADTNTRAIFL--- 99 (365)
T ss_dssp CCCSEEEE--CTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-------SS-------GGGGCTTSCCEEEEE---
T ss_pred CCCcEEEE--CCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-------CC-------CccEEECCCCCEEEE---
Confidence 35788999 6788889988887 99999997 7766543332110 11 126789999984200
Q ss_pred CCCCCcccCCC-------------CCCcEEeceeec-cccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCe
Q 010256 192 CASNDSSFPPG-------------GVSSLRLPVVVT-SQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLR 255 (514)
Q Consensus 192 ~~~~~~~~~~~-------------~~~~i~i~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~ 255 (514)
+++. .++.+.+|+ +. ..+. ......+...+...+.+++|+|+|++|+++ .++.
T Consensus 100 -------~~~~~~~~~~~~~~~~~~~g~v~v~~-~~~~g~~---~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~ 168 (365)
T 1jof_A 100 -------LAAKQPPYAVYANPFYKFAGYGNVFS-VSETGKL---EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANK 168 (365)
T ss_dssp -------EECSSTTCCEEEEEESSSCCEEEEEE-ECTTCCE---EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred -------EEecCCcceeccceeecCCceEEEEc-cCCCCcC---cceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCE
Confidence 3333 678899998 33 2111 111111111245678999999999988876 4789
Q ss_pred EEEEecc-CCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec-CCeEEEEEcC--CCcccc--ccccceeccC
Q 010256 256 INLWNLE-ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMR--QSALCD--THSKLFEEQE 329 (514)
Q Consensus 256 i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg~i~~wd~~--~~~~~~--~~~~~~~~~~ 329 (514)
|++|+++ +++.. .+... ....+...+..++|+|+| +++++++. ++.|.+|++. +++... ..+..+...
T Consensus 169 v~~~~~~~~g~~~-~~~~~---~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~- 242 (365)
T 1jof_A 169 LWTHRKLASGEVE-LVGSV---DAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG- 242 (365)
T ss_dssp EEEEEECTTSCEE-EEEEE---ECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT-
T ss_pred EEEEEECCCCCEE-EeeeE---ecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC-
Confidence 9999997 44322 11000 111235668999999999 67776664 7899999875 343210 001111100
Q ss_pred CCCccceeecccc------ceeEEE-EecCCCEEEEEe--CC-----eEEEEEccCCCCceee---eeeccccccccccc
Q 010256 330 APGTRSFFTEIIA------SISDIK-FARNGRHILSRD--YM-----TLKLWDINMDSGPVAT---FQVHEHLRPKLCDL 392 (514)
Q Consensus 330 ~~~~~~~~~~~~~------~i~~~~-~s~~g~~l~~~~--~~-----~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~ 392 (514)
+.+|.. .+..++ |+|||++|++++ .. .|.+|++...++.... ...+...
T Consensus 243 -------~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~------- 308 (365)
T 1jof_A 243 -------IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG------- 308 (365)
T ss_dssp -------CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC-------
T ss_pred -------cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCC-------
Confidence 112222 578899 999999988753 23 8999999632443321 2112111
Q ss_pred cccCCccceeeEEEcC---CCCEEEEEeC-CCcEEEEecCCC
Q 010256 393 YENDSIFDKFECCLSG---DGGRVATGSY-SNLFRVFGCSEG 430 (514)
Q Consensus 393 ~~~~~~~~v~~~~~s~---~~~~l~s~~~-dg~i~iwd~~~~ 430 (514)
...++|+| ||++|++++. ++.|.+|++...
T Consensus 309 --------~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 309 --------GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp --------TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred --------cccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 11788999 8999998876 489999998754
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=4e-18 Score=160.79 Aligned_cols=292 Identities=10% Similarity=0.087 Sum_probs=170.2
Q ss_pred EEEcCCCCeEEEecC-CC--eEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeE
Q 010256 41 IEFDKSGDHLATGDR-GG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (514)
Q Consensus 41 ~~~s~~g~~l~tg~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (514)
.+|||||++|++++. +| .|.+||+.+++.. ....++. ..+..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-----------------------~lt~~~~------------~~~~~ 85 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT-----------------------QLTEGRG------------DNTFG 85 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE-----------------------ECCCSSC------------BCSSS
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE-----------------------EeeeCCC------------CCccc
Confidence 889999999999887 67 4788887766531 2223333 33445
Q ss_pred EEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCc
Q 010256 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (514)
Q Consensus 118 i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (514)
+.| +++|+.|+.++.++.|++||+.+++...+...+.. .+. .....++++++.+
T Consensus 86 ~~~--spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~--------~~~-----~~~~~~~~dg~~l----------- 139 (388)
T 3pe7_A 86 GFL--SPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAE--------WVG-----YGTWVANSDCTKL----------- 139 (388)
T ss_dssp CEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT--------EEE-----EEEEEECTTSSEE-----------
T ss_pred eEE--cCCCCEEEEEeCCCeEEEEECCCCcceeeeechhh--------ccc-----ccceeECCCCCee-----------
Confidence 678 67888999999999999999999876555443310 000 0011123444432
Q ss_pred ccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCE-----EEEe-cCCeEEEEeccCCCceeeee
Q 010256 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET-----FISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-----l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+. +. ....+ +.+.... +... .+..|.+||+.+++..
T Consensus 140 -~~------~~----~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~---- 181 (388)
T 3pe7_A 140 -VG------IE----IRRED-----------------------WVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST---- 181 (388)
T ss_dssp -EE------EE----EEGGG-----------------------CCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE----
T ss_pred -cc------cc----ccCcc-----------------------cccccccchhhhhhccCCcceEEEEECCCCceE----
Confidence 10 00 00000 0000000 0012 3478999999865432
Q ss_pred ccCCCcccccCCceEEEEEec-CCCcEEEEEecC------CeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 272 DVKPANMEDLTEVITSAEFHP-THCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
.+..+...+..++|+| ++ ..|+....+ ..|.++|+..+.. +.+.... ....+
T Consensus 182 -----~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~----------~~~~~ 240 (388)
T 3pe7_A 182 -----VILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNM-----RKVKTHA----------EGESC 240 (388)
T ss_dssp -----EEEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCC-----EESCCCC----------TTEEE
T ss_pred -----EeecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCce-----EEeeeCC----------CCccc
Confidence 2233566789999999 98 777776653 3677788765432 1111110 00247
Q ss_pred eEEEEecCCCEEEEEe--C-C---eEEEEEccCCCCcee--eeeeccccccccccccccCCccceeeEEEcCCCCEEEEE
Q 010256 345 SDIKFARNGRHILSRD--Y-M---TLKLWDINMDSGPVA--TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 416 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~~--~-~---~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 416 (514)
..++|+|||+.|+..+ + . .|.+||+.+ ++... .+..+..... ....++|+|||+.|+..
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~~------------~~~~~~~spdg~~l~~~ 307 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPET-LENRQLTSMPACSHLMS------------NYDGSLMVGDGSDAPVD 307 (388)
T ss_dssp EEEEECTTSSCEEEEEEETTCCCEEEEEECTTT-CCEEEEEEECCEEEEEE------------CTTSSEEEEEECCC---
T ss_pred ccceECCCCCEEEEEecCCCCCcceEEEEecCC-CceEEEEcCCCceeeee------------cCCCCeEccCCCcceeE
Confidence 7889999999876532 2 2 399999986 54322 2221100000 00035799999988753
Q ss_pred ---------eCCCcEEEEecCCCceeeeeecCCCc-----------ceeEEEECCCCCceeecC-CCCeEEE
Q 010256 417 ---------SYSNLFRVFGCSEGSAESTTLEASKN-----------PMRRQVQTPSRPSRPLGS-LSGVVRR 467 (514)
Q Consensus 417 ---------~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~s~s-~d~~v~i 467 (514)
..+..|++||+.+++. ..+..+.. .+..++|+||++.|+..+ .++...+
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l 377 (388)
T 3pe7_A 308 VQDDSGYKIENDPFLYVFNMKNGTQ--HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPAL 377 (388)
T ss_dssp ---------CCCCEEEEEETTTTEE--EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEE
T ss_pred eeeccccccCCCCEEEEEeccCCce--EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeE
Confidence 4567899999987643 34444544 577889999999887665 3454444
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=1.2e-17 Score=155.05 Aligned_cols=248 Identities=8% Similarity=0.056 Sum_probs=143.2
Q ss_pred eEEEEECCCCCEEE-Ee-cCCeEEEEeccCCCceeeeeccCCCccccc----CCceEEEEEecCCCcEEEEEecC-----
Q 010256 236 INSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDL----TEVITSAEFHPTHCNMLAYSSSK----- 304 (514)
Q Consensus 236 v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~i~~v~~~p~~~~~l~~~~~d----- 304 (514)
+..++|+|+++.++ ++ .++.|.+||+.+++....+ ..... ...+..++|+|++ +++++++.+
T Consensus 45 ~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~------~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~ 117 (349)
T 1jmx_B 45 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA------NLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLN 117 (349)
T ss_dssp SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE------ESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECS
T ss_pred CceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE------EcccccccccccccceEECCCC-CEEEEEcccccccc
Confidence 45788999998665 44 7899999999866543322 11110 2236789999999 788877765
Q ss_pred -------CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCcee
Q 010256 305 -------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVA 377 (514)
Q Consensus 305 -------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~ 377 (514)
+.|.+||+.+++.... ...+.. ...+.+++|+|+|+ ++++ .+.|.+||+.+ ++.+.
T Consensus 118 ~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~-------------~~~~~~~~~s~dg~-l~~~-~~~i~~~d~~~-~~~~~ 180 (349)
T 1jmx_B 118 DHYVVKPPRLEVFSTADGLEAKP-VRTFPM-------------PRQVYLMRAADDGS-LYVA-GPDIYKMDVKT-GKYTV 180 (349)
T ss_dssp SCEEECCCEEEEEEGGGGGGBCC-SEEEEC-------------CSSCCCEEECTTSC-EEEE-SSSEEEECTTT-CCEEE
T ss_pred cccccCCCeEEEEECCCccccce-eeeccC-------------CCcccceeECCCCc-EEEc-cCcEEEEeCCC-Cceec
Confidence 8999999988653211 122221 13578899999999 5554 33599999987 66666
Q ss_pred eeeeccccccc-----cccccccCC----ccceeeEEEcCCCCEEEEEeCC-CcEEEEecCCCceeeeeecCCCcceeEE
Q 010256 378 TFQVHEHLRPK-----LCDLYENDS----IFDKFECCLSGDGGRVATGSYS-NLFRVFGCSEGSAESTTLEASKNPMRRQ 447 (514)
Q Consensus 378 ~~~~~~~~~~~-----~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~ 447 (514)
.+..+...... ...++.... ......+++++++......... ..+..++..+++.....+..+...+..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (349)
T 1jmx_B 181 ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTG 260 (349)
T ss_dssp EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEE
T ss_pred cccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceee
Confidence 55433210000 000000000 0011245666554321111111 1122255555433333333455677899
Q ss_pred EECC-CCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 448 VQTP-SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 448 ~~~~-~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
+++| ++++++++ ++.|.+++..... .. ..+.....+..++|+||+++|++++ ++.+.+|.
T Consensus 261 ~~sp~dg~~l~~~--~~~v~~~d~~~~~---~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d 322 (349)
T 1jmx_B 261 LRSPKDPNQIYGV--LNRLAKYDLKQRK---LI-KAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFN 322 (349)
T ss_dssp EECSSCTTEEEEE--ESEEEEEETTTTE---EE-EEEECSSCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred EecCCCCCEEEEE--cCeEEEEECccCe---EE-EEEcCCCCccceEECCCCCEEEEecCCCeEEEEe
Confidence 9999 99999888 8888884432211 10 1112345678999999999888765 56688886
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.79 E-value=9.8e-18 Score=171.37 Aligned_cols=291 Identities=9% Similarity=0.009 Sum_probs=171.6
Q ss_pred ceEEEEEcCCCCeEEEecC---------CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 37 IISAIEFDKSGDHLATGDR---------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
.|.+++|||||++||+++. ++.|++||+.+++.... ..+ .
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~---------------------~~l---~------- 109 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG---------------------NEL---P------- 109 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS---------------------SCC---C-------
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc---------------------eec---C-------
Confidence 3899999999999999876 68999999987763100 001 1
Q ss_pred ccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
..+..++| ++||+.|+.+. ++.|++|++.+++...+.... .. ..+....
T Consensus 110 -----~~~~~~~~--SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~-~~------~~v~~g~---------------- 158 (719)
T 1z68_A 110 -----RPIQYLCW--SPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNG-RE------NKIFNGI---------------- 158 (719)
T ss_dssp -----SSBCCEEE--CSSTTCEEEEE-TTEEEEESSTTSCCEECCCCC-BT------TTEEESS----------------
T ss_pred -----cccccceE--CCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCC-Cc------CCeEccc----------------
Confidence 34788999 67888888875 789999999887644321110 00 0000000
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cC-------------
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD------------- 253 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d------------- 253 (514)
....+...-.....+++|+|||+.|+++ .|
T Consensus 159 ------------------------------------~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~ 202 (719)
T 1z68_A 159 ------------------------------------PDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYG 202 (719)
T ss_dssp ------------------------------------CCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECC
T ss_pred ------------------------------------ccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccC
Confidence 0000000000122456677777776665 32
Q ss_pred ---------------------CeEEEEeccCCCce--eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC----Ce
Q 010256 254 ---------------------LRINLWNLEISNQS--FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----GS 306 (514)
Q Consensus 254 ---------------------~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d----g~ 306 (514)
..|++||+.+++.. ..+ ..+..+.++...+.+++|+||+ +++++.... ..
T Consensus 203 ~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~ 279 (719)
T 1z68_A 203 DEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEV--PVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSV 279 (719)
T ss_dssp SSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEEC--CCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEE
T ss_pred CCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEc--cCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEE
Confidence 27889999855421 111 1112345678889999999997 777765433 24
Q ss_pred EEEEE----cCCCccccccccceeccCCCCccceeecccccee-----EEEEecCCCEEEE--Ee-CC--eEEEEEccCC
Q 010256 307 IRLID----MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS-----DIKFARNGRHILS--RD-YM--TLKLWDINMD 372 (514)
Q Consensus 307 i~~wd----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~s~~g~~l~~--~~-~~--~i~iwd~~~~ 372 (514)
|.+|| +.+++.. ..+.. ...+|...+. .+.|+|||+.++. .. ++ .|.+||+..
T Consensus 280 l~~~d~~~~~~~g~~~----~~~~~--------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~- 346 (719)
T 1z68_A 280 LSICDFREDWQTWDCP----KTQEH--------IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV- 346 (719)
T ss_dssp EEEEEECSSSSSEECC----GGGEE--------EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS-
T ss_pred EEEEcccCCCCCCceE----EEEec--------ccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC-
Confidence 88899 7666542 22210 0012334455 7899999996654 32 24 566677654
Q ss_pred CCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC-----CcEEEEecCC--Cceeeeeec----CCC
Q 010256 373 SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----NLFRVFGCSE--GSAESTTLE----ASK 441 (514)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~--~~~~~~~~~----~~~ 441 (514)
++ ...+..+... +..+.++ +++.|+..+.+ +..++|.+.. +......+. +|.
T Consensus 347 ~~-~~~lt~~~~~---------------v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~ 409 (719)
T 1z68_A 347 EN-AIQITSGKWE---------------AINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKER 409 (719)
T ss_dssp TT-CEECSCSSSC---------------EEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTT
T ss_pred Cc-eEecccCceE---------------EEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCC
Confidence 33 3344332211 2356666 78777766554 7888998764 311112222 366
Q ss_pred cceeEEEECCCCCceee
Q 010256 442 NPMRRQVQTPSRPSRPL 458 (514)
Q Consensus 442 ~~v~~~~~~~~~~~l~s 458 (514)
..+..+.|+|++++++.
T Consensus 410 ~~~~~~~~s~dg~~l~~ 426 (719)
T 1z68_A 410 CQYYTASFSDYAKYYAL 426 (719)
T ss_dssp BCBEEEEECGGGSSEEE
T ss_pred CceEEEEECCCCCEEEE
Confidence 67788999999988764
No 164
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.78 E-value=7.5e-17 Score=163.23 Aligned_cols=203 Identities=8% Similarity=0.003 Sum_probs=129.5
Q ss_pred CccCeEEEEECCCCCEEEEe-cC----------CeEEEEeccCC-----CceeeeeccCCCccc-ccCCceEEEEEecCC
Q 010256 232 HDYHINSISNNSDGETFISA-DD----------LRINLWNLEIS-----NQSFNIVDVKPANME-DLTEVITSAEFHPTH 294 (514)
Q Consensus 232 h~~~v~~~~~~~~~~~l~s~-~d----------~~i~iwd~~~~-----~~~~~~~~~~~~~~~-~~~~~i~~v~~~p~~ 294 (514)
|...+.+++|+|||+.|+++ .+ ..|++||+.+. +... .+. .+...+..++|+|||
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~~SpDG 199 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR--------ELSDDAHRFVTGPRLSPDG 199 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE--------ESSCSCSSEECCCEECTTS
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee--------EEEecCCCcccCceECCCC
Confidence 44567889999999999987 55 58999999852 2222 233 445677889999999
Q ss_pred CcEEEEEecC--------CeEEEEEcC-CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-C--
Q 010256 295 CNMLAYSSSK--------GSIRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-- 362 (514)
Q Consensus 295 ~~~l~~~~~d--------g~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~-- 362 (514)
+.|+.++.+ ..|++||+. ++... . ... ...+|...+..+.|+|||+++++++. +
T Consensus 200 -~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~-~-~~~-----------l~~~~~~~~~~~~~spdg~l~~~~~~~~~~ 265 (662)
T 3azo_A 200 -RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA-D-TRT-----------LLGGPEEAIAQAEWAPDGSLIVATDRTGWW 265 (662)
T ss_dssp -SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE-E-EEE-----------EEEETTBCEEEEEECTTSCEEEEECTTSSC
T ss_pred -CEEEEEECCCCCCCCCCcEEEEEEECCCCccc-c-cEE-----------eCCCCCceEcceEECCCCeEEEEECCCCCe
Confidence 788877755 379999998 45210 0 111 12223467899999999997766654 6
Q ss_pred eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEE--ecCCCceeeeeecCC
Q 010256 363 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF--GCSEGSAESTTLEAS 440 (514)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~ 440 (514)
.|.+||+.. ++.......+.... .. ....++..++|+|+++++++++. +.++|| |+.++ . ...+..+
T Consensus 266 ~l~~~~~~~-~~~~~l~~~~~~~~----~p---~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~-~-~~~l~~~ 334 (662)
T 3azo_A 266 NLHRVDPAT-GAATQLCRREEEFA----GP---LWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG-E-LVDAAGP 334 (662)
T ss_dssp EEEEECTTT-CCEEESSCCSSBSS----CC---CCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT-E-EEECCSS
T ss_pred EEEEEECCC-Cceeeccccccccc----Cc---cccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC-c-EEEecCC
Confidence 566666644 44333222222110 00 00011237899999999999998 999999 55444 2 4667777
Q ss_pred CcceeEE-EECCCCCceeecCCCCeEEE
Q 010256 441 KNPMRRQ-VQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 441 ~~~v~~~-~~~~~~~~l~s~s~d~~v~i 467 (514)
...+..+ .+.++.-++++++.+....+
T Consensus 335 ~~~~~~~~s~~~~~~~~~~~~~~~~~~i 362 (662)
T 3azo_A 335 WTEWAATLTVSGTRAVGVAASPRTAYEV 362 (662)
T ss_dssp CCEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred CCeEEEEEecCCCEEEEEEcCCCCCCEE
Confidence 7777766 55444445556666655554
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.77 E-value=2.7e-15 Score=134.82 Aligned_cols=265 Identities=11% Similarity=0.184 Sum_probs=177.1
Q ss_pred ccccccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccc
Q 010256 11 AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (514)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (514)
+.....|.+...|+.+.. ..++-..+.+++++++|+++++...++.|.+|+.....
T Consensus 7 ~~~~~~~~~~~~~g~~g~--~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~---------------------- 62 (286)
T 1q7f_A 7 QIKRQRMIYHCKFGEFGV--MEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF---------------------- 62 (286)
T ss_dssp -CCCEEECEEEEECCBSS--STTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE----------------------
T ss_pred ccccceeEEEEeccCCCC--CCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE----------------------
Confidence 344566777777776543 34677889999999999988888889999999975221
Q ss_pred eeeeeec------cCCCccccccccccccceeEEEEeeCCCCcEEEEeeC-CCeEEEEEcCccEEEEEeeccCCCccccC
Q 010256 91 RYKTEFQ------SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAG 163 (514)
Q Consensus 91 ~~~~~~~------~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
...+. ++. ..+..+++. .+++.++++... ++.|.+|+. +++......
T Consensus 63 --~~~~~~~~~~~~~~------------~~p~~i~~~-~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~~---------- 116 (286)
T 1q7f_A 63 --KFQFGECGKRDSQL------------LYPNRVAVV-RNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFG---------- 116 (286)
T ss_dssp --EEEECCBSSSTTCB------------SSEEEEEEE-TTTTEEEEEECGGGCEEEEECT-TSCEEEEEC----------
T ss_pred --EEEecccCCCcccc------------cCceEEEEE-cCCCeEEEEcCCCCCEEEEECC-CCcEEEEec----------
Confidence 11111 122 457888884 245555555533 789999984 443221110
Q ss_pred CcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC
Q 010256 164 NGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS 243 (514)
Q Consensus 164 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 243 (514)
..+...+.++++++
T Consensus 117 ------------------------------------------------------------------~~~~~~~~~i~~~~ 130 (286)
T 1q7f_A 117 ------------------------------------------------------------------ATILQHPRGVTVDN 130 (286)
T ss_dssp ------------------------------------------------------------------TTTCSCEEEEEECT
T ss_pred ------------------------------------------------------------------CccCCCceEEEEeC
Confidence 11224567899999
Q ss_pred CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccc
Q 010256 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (514)
Q Consensus 244 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 322 (514)
+++++++. .++.|.+||.. ++.. ..+ ....+...+..++++|++ +++++...++.|++||... +. +
T Consensus 131 ~g~l~v~~~~~~~i~~~~~~-g~~~-~~~-----~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g-~~----~ 197 (286)
T 1q7f_A 131 KGRIIVVECKVMRVIIFDQN-GNVL-HKF-----GCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEG-QY----L 197 (286)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEE-EEE-----ECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTC-CE----E
T ss_pred CCCEEEEECCCCEEEEEcCC-CCEE-EEe-----CCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCC-CE----E
Confidence 99988887 78999999975 3322 221 111234568999999998 7888778899999999754 32 2
Q ss_pred cceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-C-eEEEEEccCCCCceeeeeeccccccccccccccCCccc
Q 010256 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 400 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
..+... ++...+..++++++|+++++... + .|.+||.. ++.+..+..+.... .
T Consensus 198 ~~~~~~----------g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~-------------~ 252 (286)
T 1q7f_A 198 RQIGGE----------GITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHA-------------Q 252 (286)
T ss_dssp EEESCT----------TTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCS-------------C
T ss_pred EEEccC----------CccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CCEEEEEcccCCCC-------------c
Confidence 222211 11246789999999998888654 4 99999964 66666665543211 1
Q ss_pred eeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
...++++|+|+++++ +.|++|++|+....
T Consensus 253 ~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 253 CFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred ceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 237999999987777 67899999998643
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.77 E-value=1.6e-16 Score=162.41 Aligned_cols=204 Identities=11% Similarity=0.057 Sum_probs=124.2
Q ss_pred EEEEECCCCCEEEEe-cC---------CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCe
Q 010256 237 NSISNNSDGETFISA-DD---------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 237 ~~~~~~~~~~~l~s~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
.+++|||||++|+.+ .+ +.+.+||+.+++.. .+..+...+..++||||| +.||.+ .++.
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~---------~l~~~~~~~~~~~~SPdG-~~la~~-~~~~ 133 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI---------TEERIPNNTQWVTWSPVG-HKLAYV-WNND 133 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC---------CSSCCCTTEEEEEECSST-TCEEEE-ETTE
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE---------EcccCCCcceeeEECCCC-CEEEEE-ECCe
Confidence 468899999999887 54 66789999865432 345567789999999999 778877 5789
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccc---------cceeEEEEecCCCEEEEEe-C-CeEEEEE-------
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII---------ASISDIKFARNGRHILSRD-Y-MTLKLWD------- 368 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~s~~g~~l~~~~-~-~~i~iwd------- 368 (514)
|++||+.++... ..+..+.. ...+.++. +....+.|||||+.|+..+ + +.+.+|+
T Consensus 134 i~~~~~~~~~~~---~lt~~g~~----~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~ 206 (740)
T 4a5s_A 134 IYVKIEPNLPSY---RITWTGKE----DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE 206 (740)
T ss_dssp EEEESSTTSCCE---ECCSCCBT----TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST
T ss_pred EEEEECCCCceE---EEcCCCCc----cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC
Confidence 999999887642 11111111 11122222 2234589999999999753 2 4444444
Q ss_pred ----------------------------ccC---CCC-ceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE
Q 010256 369 ----------------------------INM---DSG-PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 416 (514)
Q Consensus 369 ----------------------------~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 416 (514)
+.+ ... ....+..... + ...-.-+..++|+|||++++..
T Consensus 207 ~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~-------~--~~~~~~~~~~~wspdg~~~~~~ 277 (740)
T 4a5s_A 207 SLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS-------M--LIGDHYLCDVTWATQERISLQW 277 (740)
T ss_dssp TCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH-------H--HTSCEEEEEEEEEETTEEEEEE
T ss_pred CCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc-------C--CCCCeEEEEEEEeCCCeEEEEE
Confidence 432 100 1111110000 0 0011124589999999977654
Q ss_pred eC----CCcEEEEecCCCc----eee-eee--cCCCccee-----EEEECCCCCcee-ecC-CCCeEEE
Q 010256 417 SY----SNLFRVFGCSEGS----AES-TTL--EASKNPMR-----RQVQTPSRPSRP-LGS-LSGVVRR 467 (514)
Q Consensus 417 ~~----dg~i~iwd~~~~~----~~~-~~~--~~~~~~v~-----~~~~~~~~~~l~-s~s-~d~~v~i 467 (514)
.. +..|++||+.+++ +.. ..+ ++|...+. ...|+|||+.++ ..+ .+|.-.|
T Consensus 278 ~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l 346 (740)
T 4a5s_A 278 LRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHI 346 (740)
T ss_dssp EESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEE
T ss_pred eCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEE
Confidence 32 3479999999886 221 222 55665554 788999999876 554 4454444
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.76 E-value=1.3e-16 Score=150.33 Aligned_cols=221 Identities=8% Similarity=0.045 Sum_probs=134.5
Q ss_pred EEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEE--EEecCCCcEEEEE-------------
Q 010256 238 SISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA--EFHPTHCNMLAYS------------- 301 (514)
Q Consensus 238 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v--~~~p~~~~~l~~~------------- 301 (514)
.++|+||++.|+.+ .++.|++||+.+++... + ...+...+... .++|++ .+++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~-~-------~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~ 155 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENV-V-------YQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDW 155 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEE-E-------EECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSH
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCccee-e-------eechhhcccccceeECCCC-CeeccccccCccccccccc
Confidence 45799999999998 78899999998765432 2 12233334333 348888 666632
Q ss_pred ---------ecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec-CCCEEEEEeC-------CeE
Q 010256 302 ---------SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-------MTL 364 (514)
Q Consensus 302 ---------~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~-------~~i 364 (514)
..+..|.+||+.+++.. . +..+...+..++|+| ||+.|+.... ..|
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g~~~-----~------------l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l 218 (388)
T 3pe7_A 156 KKFHEFYFTKPCCRLMRVDLKTGEST-----V------------ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARM 218 (388)
T ss_dssp HHHHHHGGGCCCEEEEEEETTTCCEE-----E------------EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSE
T ss_pred chhhhhhccCCcceEEEEECCCCceE-----E------------eecCCccccccEECCCCCCEEEEEEecCCCCCcceE
Confidence 23467999999887531 1 222335688999999 9998887542 267
Q ss_pred EEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC-CC----cEEEEecCCCceee-eeec
Q 010256 365 KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN----LFRVFGCSEGSAES-TTLE 438 (514)
Q Consensus 365 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg----~i~iwd~~~~~~~~-~~~~ 438 (514)
.++|... .....+..+.... .+..++|+|||+.|+..+. ++ .|++||+.+++... ..+.
T Consensus 219 ~~~d~~~--~~~~~l~~~~~~~-------------~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 283 (388)
T 3pe7_A 219 WLINEDG--TNMRKVKTHAEGE-------------SCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMP 283 (388)
T ss_dssp EEEETTS--CCCEESCCCCTTE-------------EEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEEC
T ss_pred EEEeCCC--CceEEeeeCCCCc-------------ccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCC
Confidence 7777653 3333333322100 1236899999997765443 22 39999999875432 2233
Q ss_pred CCCcc---eeEEEECCCCCceeec---------CCCCeEEEee--CCCCCccccCCccccccc-----------ceEEEE
Q 010256 439 ASKNP---MRRQVQTPSRPSRPLG---------SLSGVVRRVK--GADNSALDANGNAFDFSM-----------KLLHLA 493 (514)
Q Consensus 439 ~~~~~---v~~~~~~~~~~~l~s~---------s~d~~v~i~~--~~~~~~~~~~~~~~~~~~-----------~v~~~~ 493 (514)
++... .....|+|+|+.|+.. ..+..|.+++ +.... . ...+.. .+.+++
T Consensus 284 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~----l~~~~~~~~~~~~~~~~~~~~~~ 357 (388)
T 3pe7_A 284 ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH--R----VARHDTSWKVFEGDRQVTHPHPS 357 (388)
T ss_dssp CEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE--E----EEECCCCCCCBTTBSSTTCCCCE
T ss_pred CceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE--E----eccccCcccccccccccCCCCcc
Confidence 31111 1223789999988864 4456777733 22111 1 111222 578899
Q ss_pred EcCCCCEEEEEe
Q 010256 494 WHPSENSIACAA 505 (514)
Q Consensus 494 ~spd~~~l~~~~ 505 (514)
|+|||+.|+.++
T Consensus 358 ~spDg~~l~~~s 369 (388)
T 3pe7_A 358 FTPDDKQILFTS 369 (388)
T ss_dssp ECTTSSEEEEEE
T ss_pred CCCCCCEEEEEe
Confidence 999999999766
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=1.8e-17 Score=156.77 Aligned_cols=293 Identities=10% Similarity=0.059 Sum_probs=183.4
Q ss_pred cccceEEEEEcCCCCeEEEecCC---CeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
|...+.+++|||||++|+..... ..|.+|++.+++.. .+..+.
T Consensus 34 ~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~------------------------~l~~~~---------- 79 (396)
T 3c5m_A 34 HRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV------------------------QLTEGK---------- 79 (396)
T ss_dssp ECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE------------------------ECCCSS----------
T ss_pred cceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE------------------------EeecCC----------
Confidence 44457889999999998877543 36888888766531 111111
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
......+.| +++|++|+.++.++.|.+|++.+++...+...+. .|+++|+.+
T Consensus 80 -~~~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~---------------------~~~~~g~~l---- 131 (396)
T 3c5m_A 80 -GDNTFGGFI--STDERAFFYVKNELNLMKVDLETLEEQVIYTVDE---------------------EWKGYGTWV---- 131 (396)
T ss_dssp -CBCTTTCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCT---------------------TEEEEEEEE----
T ss_pred -CCccccceE--CCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccc---------------------ccCCCCCEE----
Confidence 011233678 6788899999999999999999887665544331 255666655
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe------cCCeEEEEeccCC
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA------DDLRINLWNLEIS 264 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~------~d~~i~iwd~~~~ 264 (514)
+....+....+|. ..+.|+|+++.++.. .+..|.+||+.++
T Consensus 132 --------~~~~~~~~~~~~~-------------------------~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g 178 (396)
T 3c5m_A 132 --------ANSDCTKLVGIEI-------------------------LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG 178 (396)
T ss_dssp --------ECTTSSEEEEEEE-------------------------EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC
T ss_pred --------EeccCCccccccc-------------------------cccccCCCCcceeeeeeccCCCcceEEEEECCCC
Confidence 4443333333222 123467888876643 4568999999865
Q ss_pred CceeeeeccCCCcccccCCceEEEEEec-CCCcEEEEEecC------CeEEEEEcCCCccccccccceeccCCCCcccee
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF 337 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (514)
+.. . +..+...+..+.|+| ++ ..|+..+.+ ..|.+||+..+... .+....
T Consensus 179 ~~~-~--------~~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-----~l~~~~-------- 235 (396)
T 3c5m_A 179 ELE-V--------IHQDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNVR-----KIKEHA-------- 235 (396)
T ss_dssp CEE-E--------EEEESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCCE-----ESSCCC--------
T ss_pred cEE-e--------eccCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCcee-----EeeccC--------
Confidence 432 2 223566788999999 77 666665543 36888887654421 111000
Q ss_pred eccccceeEEEEecCCCEEEEEe-C-----CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC-CC
Q 010256 338 TEIIASISDIKFARNGRHILSRD-Y-----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DG 410 (514)
Q Consensus 338 ~~~~~~i~~~~~s~~g~~l~~~~-~-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~ 410 (514)
....+..++|+|+|++|+..+ + +.|++||+.+ ++... +..... . .+.|+| ||
T Consensus 236 --~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~-l~~~~~----------------~-~~~~s~~dg 294 (396)
T 3c5m_A 236 --EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET-LENEE-VMVMPP----------------C-SHLMSNFDG 294 (396)
T ss_dssp --TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT-CCEEE-EEECCS----------------E-EEEEECSSS
T ss_pred --CCccccceEECCCCCEEEEEecCCCCccceEEEEECCC-CCeEE-eeeCCC----------------C-CCCccCCCC
Confidence 013578899999999877642 1 3499999985 44322 221111 1 378999 99
Q ss_pred CEEEEEe----------------CCCcEEEEecCCCceeeeeecCCCc-----------ceeEEEECCCCCceeecCC-C
Q 010256 411 GRVATGS----------------YSNLFRVFGCSEGSAESTTLEASKN-----------PMRRQVQTPSRPSRPLGSL-S 462 (514)
Q Consensus 411 ~~l~s~~----------------~dg~i~iwd~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~s~s~-d 462 (514)
++|++++ .++.|++||+.++.. ..+..+.. .+..+.|+|+++.|+..+. +
T Consensus 295 ~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~ 372 (396)
T 3c5m_A 295 SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA--QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE 372 (396)
T ss_dssp SEEEEEECCC----------CCCCCCEEEEEETTTTBC--CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT
T ss_pred ceEEEecCCcceeeccccccccCCCCcEEEEecccCce--EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC
Confidence 9888754 347899999987643 33444433 2556789999998877654 4
Q ss_pred CeEEE
Q 010256 463 GVVRR 467 (514)
Q Consensus 463 ~~v~i 467 (514)
+...+
T Consensus 373 ~~~~l 377 (396)
T 3c5m_A 373 GVPAI 377 (396)
T ss_dssp SSCEE
T ss_pred CCceE
Confidence 44444
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=9.5e-16 Score=142.13 Aligned_cols=278 Identities=9% Similarity=0.005 Sum_probs=169.5
Q ss_pred EEEEeeCCCCcEEEEee----------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 117 ~i~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
.++| +++|++++++. .++.|.+||..+.+............ .....+..++++|||+.+
T Consensus 54 ~i~~--spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~---------~~g~~p~~i~~spdg~~l 122 (361)
T 2oiz_A 54 HVQV--SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV---------QGLNYDGLFRQTTDGKFI 122 (361)
T ss_dssp EEEE--CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC---------CBCCCGGGEEECTTSSEE
T ss_pred ceEE--CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc---------ccCCCcceEEECCCCCEE
Confidence 7888 67888998876 36789999999887666554321000 000122378999999988
Q ss_pred ccccCCCCCCcccCCCC--CCcEEeceeecccccccccccccc-ccccCccCeEEEEECCCC-CEEEEe-cCCeEEEEec
Q 010256 187 ERNFGCASNDSSFPPGG--VSSLRLPVVVTSQETNLVAGCRRI-YAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNL 261 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~--~~~i~i~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~ 261 (514)
+++.. ++.|.+|| +..... ... + . ......+.+.|++ ..+++. .||.+.+|+.
T Consensus 123 ------------~v~n~~~~~~v~v~d-~~~~~~------~~~~i-~--~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~ 180 (361)
T 2oiz_A 123 ------------VLQNASPATSIGIVD-VAKGDY------VEDVT-A--AAGCWSVIPQPNRPRSFMTICGDGGLLTINL 180 (361)
T ss_dssp ------------EEEEESSSEEEEEEE-TTTTEE------EEEEG-G--GTTEEEEEECTTSSSEEEEEETTSSEEEEEE
T ss_pred ------------EEECCCCCCeEEEEE-CCCCcE------EEEEe-c--CCCcceeEEcCCCCeeEEEECCCCcEEEEEE
Confidence 66543 68899999 332211 111 1 0 0122335567765 455555 8899999988
Q ss_pred cCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccc
Q 010256 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (514)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (514)
+........... ...+.....+ ..+.++|++ ..++..+.++.+.++|+....... ...+...... ........
T Consensus 181 ~~~g~~~~~~~~-~~~~~~~~~~-~~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~--~~~~~~~~~~--~~~~~~~p 253 (361)
T 2oiz_A 181 GEDGKVASQSRS-KQMFSVKDDP-IFIAPALDK-DKAHFVSYYGNVYSADFSGDEVKV--DGPWSLLNDE--DKAKNWVP 253 (361)
T ss_dssp CTTSSEEEEEEC-CCCSCTTTSC-BCSCCEECS-SEEEEEBTTSEEEEEECSSSSCEE--EEEEESCCHH--HHHTTCEE
T ss_pred CCCCcEeeeccc-cceEcCCCCc-eEEEecccC-CEEEEEeCCCeEEEEEecCCCcee--cccccccCcc--cccccccc
Confidence 653333211100 0011111222 233346777 566667789999999987553210 1111100000 00000000
Q ss_pred cceeEEEEecCCCEEEEE-e-----------CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 342 ASISDIKFARNGRHILSR-D-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~~-~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
.....++|+|+++.+++. . ...|.+||+.+ .+.+.++..+. .. .++|+||
T Consensus 254 ~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~-p~----------------~ia~spd 315 (361)
T 2oiz_A 254 GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD-AL----------------SMTIDQQ 315 (361)
T ss_dssp CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT-CC----------------EEEEETT
T ss_pred CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC-ee----------------EEEECCC
Confidence 112237899998877764 2 24899999998 88888887765 22 8999999
Q ss_pred CCEEEEEeCCCcEEEEecCCC--ceeeeeecCCCcceeEEEECCCCC
Q 010256 410 GGRVATGSYSNLFRVFGCSEG--SAESTTLEASKNPMRRQVQTPSRP 454 (514)
Q Consensus 410 ~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~ 454 (514)
|++|++++. +.|.+||..++ +.. ..+..+......++++|+|+
T Consensus 316 g~~l~v~n~-~~v~v~D~~t~~l~~~-~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 316 RNLMLTLDG-GNVNVYDISQPEPKLL-RTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TTEEEEECS-SCEEEEECSSSSCEEE-EEETTSCSSEEEEEECCCSC
T ss_pred CCEEEEeCC-CeEEEEECCCCcceee-EEeccCCCCcEEEEecCCCC
Confidence 999998887 99999999987 433 55556667778899999975
No 170
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.75 E-value=2e-16 Score=147.56 Aligned_cols=258 Identities=11% Similarity=0.015 Sum_probs=156.6
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEec-CCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERT-DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
...+..++|+|||++|++++.+ .|.+|++. +++.. .......+ +
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~---------------------~~~~~~~~-------------g 83 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV---------------------HEASHPIG-------------G 83 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE---------------------EEEEEECC-------------S
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE---------------------EeeEeecC-------------C
Confidence 3468899999999999998887 89999986 54421 01111111 1
Q ss_pred ceeEEEEeeCCCCcE--EEEee-------------CCCeEEEEEcC-ccEEEEEeeccCCCccccCCcceecccccCCce
Q 010256 114 KINKIRWCQSANSAL--YLLST-------------NDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~--l~s~~-------------~d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (514)
....++| +++|++ ++++. .++.+.+|++. +++........... ... .+..+
T Consensus 84 ~~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~----~~~-------~~~~~ 150 (365)
T 1jof_A 84 HPRANDA--DTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQ----ENT-------GIHGM 150 (365)
T ss_dssp SGGGGCT--TSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECC----TTC-------CEEEE
T ss_pred CCccEEE--CCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeC----CCC-------cceEE
Confidence 1334667 677774 44553 68999999997 45543322210000 011 12278
Q ss_pred eeccCCCccccccCCCCCCcccCCC-CCCcEEeceeec-ccccccccccccccc-ccCccCeEEEEECCCCCEEEEe--c
Q 010256 178 SYMANGGCGERNFGCASNDSSFPPG-GVSSLRLPVVVT-SQETNLVAGCRRIYA-HAHDYHINSISNNSDGETFISA--D 252 (514)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~i~i~~~~~-~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~--~ 252 (514)
+|+|||+.+ ++++ .++.|.+|+ +. ..+.. ....+. ..|...+..++|+|+|++++++ .
T Consensus 151 ~~spdG~~l------------~~~~~~~~~v~~~~-~~~~g~~~----~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~ 213 (365)
T 1jof_A 151 VFDPTETYL------------YSADLTANKLWTHR-KLASGEVE----LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA 213 (365)
T ss_dssp EECTTSSEE------------EEEETTTTEEEEEE-ECTTSCEE----EEEEEECSSTTCCEEEEEECTTSSEEEEEETT
T ss_pred EECCCCCEE------------EEEcCCCCEEEEEE-ECCCCCEE----EeeeEecCCCCCCCCEeEECCCCCEEEEEECC
Confidence 999999976 5433 467899999 43 11110 011110 1235668999999999988776 4
Q ss_pred CCeEEEEeccC--CCcee--eeeccCCCcccccCC------ceEEEE-EecCCCcEEEEEecC-C-----eEEEEEcC-C
Q 010256 253 DLRINLWNLEI--SNQSF--NIVDVKPANMEDLTE------VITSAE-FHPTHCNMLAYSSSK-G-----SIRLIDMR-Q 314 (514)
Q Consensus 253 d~~i~iwd~~~--~~~~~--~~~~~~~~~~~~~~~------~i~~v~-~~p~~~~~l~~~~~d-g-----~i~~wd~~-~ 314 (514)
++.|.+|+++. ++... ..+..-+..+.++.. .+..++ |+|+| ++|+++..+ . .|.+|++. +
T Consensus 214 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~ 292 (365)
T 1jof_A 214 GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDC 292 (365)
T ss_dssp TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCC
Confidence 78999998753 32211 111111111222332 588999 99999 677666543 3 89999996 4
Q ss_pred CccccccccceeccCCCCccceeeccccceeEEEEec---CCCEEEEEe-C-CeEEEEEccC
Q 010256 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILSRD-Y-MTLKLWDINM 371 (514)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~g~~l~~~~-~-~~i~iwd~~~ 371 (514)
++.. .... ....+...+..++|+| +|++|++++ + +.|.+|+++.
T Consensus 293 g~~~----~~~~---------~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 293 GSIE----KQLF---------LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp SCEE----EEEE---------EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CCEE----Eeee---------eeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 4421 1000 0011123466789999 899999874 4 8999999985
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=4.4e-15 Score=137.69 Aligned_cols=312 Identities=8% Similarity=-0.014 Sum_probs=185.0
Q ss_pred CCCcEEEEee------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCc
Q 010256 124 ANSALYLLST------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (514)
Q Consensus 124 ~~~~~l~s~~------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (514)
+++.+++++. .|+.|.+||..+++........ ..+ .++++|||+.+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g----------------~~p-~i~~spdg~~l----------- 64 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTA----------------FNG-HVQVSNDGKKI----------- 64 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECC----------------EEE-EEEECTTSSEE-----------
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCC----------------CCC-ceEECCCCCEE-----------
Confidence 3445555543 4789999999998866544332 122 67899999987
Q ss_pred ccCCC----------CCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--c-CCeEEEEeccCC
Q 010256 198 SFPPG----------GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D-DLRINLWNLEIS 264 (514)
Q Consensus 198 ~~~~~----------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~-d~~i~iwd~~~~ 264 (514)
++++ .++.|.+|| ....+........... ..+......++++|+|++|+++ . +++|.+||+++.
T Consensus 65 -yv~~~~~~~~~~g~~~~~v~v~d-~~t~~~~~~i~~~~~~-~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~ 141 (361)
T 2oiz_A 65 -YTMTTYHERITRGKRSDVVEVWD-ADKLTFEKEISLPPKR-VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG 141 (361)
T ss_dssp -EEEEEEETTSSSSCEEEEEEEEE-TTTCCEEEEEEECTTB-CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT
T ss_pred -EEEEecccccccCCCCCEEEEEE-CcCCcEEEEEEcCccc-cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC
Confidence 4443 367799998 3322211100000000 0122346679999999999887 3 689999999976
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCC-Ccccccc--ccceeccCCCCccceeeccc
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTH--SKLFEEQEAPGTRSFFTEII 341 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 341 (514)
+....++ . . .....+.+.|++...+++.+.||.+.+|++.. ++..... ...++. ..
T Consensus 142 ~~~~~~i-------~-~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~------------~~ 200 (361)
T 2oiz_A 142 DYVEDVT-------A-A-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV------------KD 200 (361)
T ss_dssp EEEEEEG-------G-G-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT------------TT
T ss_pred cEEEEEe-------c-C-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC------------CC
Confidence 5432201 1 1 12234667887767888899999999999865 3321000 011111 11
Q ss_pred cceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCce--eeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC
Q 010256 342 ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (514)
.++ .+.+++++..++..+. +.|.++|+.. .... ..+.......... .... . ....++|+||++.++.+..
T Consensus 201 ~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~-~~~~~~~~~~~~~~~~~~~-~~~p-~---g~~~~a~~~dg~~lyv~~~ 273 (361)
T 2oiz_A 201 DPI-FIAPALDKDKAHFVSYYGNVYSADFSG-DEVKVDGPWSLLNDEDKAK-NWVP-G---GYNLVGLHRASGRMYVFMH 273 (361)
T ss_dssp SCB-CSCCEECSSEEEEEBTTSEEEEEECSS-SSCEEEEEEESCCHHHHHT-TCEE-C---CSSCEEEETTTTEEEEEEE
T ss_pred Cce-EEEecccCCEEEEEeCCCeEEEEEecC-CCceecccccccCcccccc-cccc-C---CeeEEEEecCCCeEEEEEc
Confidence 121 2334677776665544 8999999874 2211 1111100000000 0000 0 0013789999888776543
Q ss_pred -----------CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccccccc
Q 010256 419 -----------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSM 487 (514)
Q Consensus 419 -----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~ 487 (514)
++.|.+||+.+++ ...++..+. +..++++|++++|++++. +.|.+++..... .+..........
T Consensus 274 ~~~~~~~~~~~~~~v~viD~~t~~-~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~-l~~~~~i~~~G~ 348 (361)
T 2oiz_A 274 PDGKEGTHKFPAAEIWVMDTKTKQ-RVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE-PKLLRTIEGAAE 348 (361)
T ss_dssp SSCCTTCTTCCCSEEEEEETTTTE-EEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSS-CEEEEEETTSCS
T ss_pred cCCCcccccCCCceEEEEECCCCc-EEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCc-ceeeEEeccCCC
Confidence 3589999999874 456777776 889999999999998887 999995433220 011111123466
Q ss_pred ceEEEEEcCCCC
Q 010256 488 KLLHLAWHPSEN 499 (514)
Q Consensus 488 ~v~~~~~spd~~ 499 (514)
....++++|||+
T Consensus 349 ~P~~~~~~p~G~ 360 (361)
T 2oiz_A 349 ASLQVQFHPVGG 360 (361)
T ss_dssp SEEEEEECCCSC
T ss_pred CcEEEEecCCCC
Confidence 778999999986
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=1.1e-14 Score=133.96 Aligned_cols=276 Identities=12% Similarity=0.101 Sum_probs=177.3
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
..|.+++|++++..++..+.++.++.|.- + ....+..+. ..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------------------~~~~~~~~~------------~~~ 47 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITA---E-----------------------PWLEISKKG------------LQL 47 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEEC---E-----------------------EEEEEESSC------------CCE
T ss_pred cccceeeecCCccceeEEeecccCccccc---c-----------------------eeEEEeccC------------ccc
Confidence 45788899998888877777888888832 1 112334443 557
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
.+++| +++|++++++..++.|.+||..+++.....
T Consensus 48 ~~~~~--~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~------------------------------------------- 82 (333)
T 2dg1_A 48 EGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRPF------------------------------------------- 82 (333)
T ss_dssp EEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEE-------------------------------------------
T ss_pred cCcEE--CCCCCEEEEECCCCEEEEEeCCCCcEEEEe-------------------------------------------
Confidence 88999 567777778888999999998876543221
Q ss_pred CcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cC----CeEEEEeccCCCceeee
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD----LRINLWNLEISNQSFNI 270 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d----~~i~iwd~~~~~~~~~~ 270 (514)
..+...+.+++++++++++++. .+ +.|.+||.++.... .+
T Consensus 83 ----------------------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~-~~ 127 (333)
T 2dg1_A 83 ----------------------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ-DI 127 (333)
T ss_dssp ----------------------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE-EE
T ss_pred ----------------------------------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE-EE
Confidence 0122457899999999988887 55 68999998855432 11
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEec------CCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
+. .......+..++++|++ +++++... .+.|..+|..+++.. .+ ......+
T Consensus 128 ~~-----~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-----~~------------~~~~~~~ 184 (333)
T 2dg1_A 128 IE-----DLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVT-----PI------------IQNISVA 184 (333)
T ss_dssp EC-----SSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEE-----EE------------EEEESSE
T ss_pred Ec-----cCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEE-----Ee------------ecCCCcc
Confidence 10 01234578999999998 77776553 245666665543321 11 1112357
Q ss_pred eEEEEecCCCEEEEE-e-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcE
Q 010256 345 SDIKFARNGRHILSR-D-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~-~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (514)
..++|+|+|+.|+.+ . ++.|.+||+...+..+..+...... .+. . ......++++++|+++++...++.|
T Consensus 185 ~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~-----~~~--~-~~~~~~i~~d~~G~l~v~~~~~~~v 256 (333)
T 2dg1_A 185 NGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY-----YFT--G-HEGPDSCCIDSDDNLYVAMYGQGRV 256 (333)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE-----ECC--S-SSEEEEEEEBTTCCEEEEEETTTEE
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE-----ecC--C-CCCCCceEECCCCCEEEEEcCCCEE
Confidence 889999999876654 3 3899999997434433322110000 000 0 0012379999999988888788999
Q ss_pred EEEecCCCceeeeeecCCC------cceeEEEECCCCCceeecCCC
Q 010256 423 RVFGCSEGSAESTTLEASK------NPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 423 ~iwd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~s~d 462 (514)
.+||.. ++ ....+..+. ..+..++++|+++.|..++.+
T Consensus 257 ~~~d~~-g~-~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 257 LVFNKR-GY-PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEECTT-SC-EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEECCC-CC-EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 999985 43 333444332 268899999998777655544
No 173
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.70 E-value=4.6e-13 Score=130.40 Aligned_cols=323 Identities=11% Similarity=0.029 Sum_probs=204.5
Q ss_pred CCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCC
Q 010256 45 KSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSA 124 (514)
Q Consensus 45 ~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~ 124 (514)
|.+.++++...++.|.++|..+++.. ..+... ..+..+.| ++
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~-----------------------~~i~~g-------------~~p~~v~~--Sp 206 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIK-----------------------TVLDTG-------------YAVHISRL--SA 206 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEE-----------------------EEEECS-------------SCEEEEEE--CT
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEE-----------------------EEEeCC-------------CCccceEE--CC
Confidence 44556777778999999999877642 233221 34678888 67
Q ss_pred CCcEEEEeeCCCeEEEEEcC--ccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCC
Q 010256 125 NSALYLLSTNDKTIKLWKVQ--EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG 202 (514)
Q Consensus 125 ~~~~l~s~~~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 202 (514)
+|+++++++.|+.|.+||+. +++......
T Consensus 207 DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~------------------------------------------------- 237 (567)
T 1qks_A 207 SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK------------------------------------------------- 237 (567)
T ss_dssp TSCEEEEEETTSEEEEEETTSSSCCEEEEEE-------------------------------------------------
T ss_pred CCCEEEEEcCCCeEEEEECCCCCCcEeEEEe-------------------------------------------------
Confidence 88899999999999999995 443322111
Q ss_pred CCCcEEeceeeccccccccccccccccccCccCeEEEEEC----CCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCC
Q 010256 203 GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN----SDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA 276 (514)
Q Consensus 203 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (514)
.+ .....++|+ |||++++++ .+++|.++|..+.+... .+.....
T Consensus 238 ---------------------------~G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~-~i~~~~~ 287 (567)
T 1qks_A 238 ---------------------------IG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK-IQSTRGM 287 (567)
T ss_dssp ---------------------------CC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE-EEECCEE
T ss_pred ---------------------------cC--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEE-EEecccc
Confidence 00 124578999 699998887 68999999988665443 3222111
Q ss_pred ccc---ccC-CceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC
Q 010256 277 NME---DLT-EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (514)
Q Consensus 277 ~~~---~~~-~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 352 (514)
... .|. ..+..+..+++++.+++....+|.|.++|....+... +..+.. ......+.|+|+
T Consensus 288 ~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~--v~~i~~-------------~~~~~d~~~~pd 352 (567)
T 1qks_A 288 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK--TTEISA-------------ERFLHDGGLDGS 352 (567)
T ss_dssp CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE--EEEEEC-------------CSSEEEEEECTT
T ss_pred ccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce--eeeeec-------------cccccCceECCC
Confidence 111 122 2678899999886677777778999999987643210 111111 124667899999
Q ss_pred CCEEEEEe--CCeEEEEEccCCCCceeeeee-ccccccccccccccCCccceeeEE-EcCCCC-EEEEEe-CCCcEEEEe
Q 010256 353 GRHILSRD--YMTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECC-LSGDGG-RVATGS-YSNLFRVFG 426 (514)
Q Consensus 353 g~~l~~~~--~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~-~l~s~~-~dg~i~iwd 426 (514)
|++++++. +++|.++|+.+ ++.+..+.. ...... . . ... ++|++. .++++. .++.|.++|
T Consensus 353 gr~~~va~~~sn~V~ViD~~t-~kl~~~i~vgg~~Php--------g--~---g~~~~~p~~g~v~~t~~~g~~~Vsvid 418 (567)
T 1qks_A 353 HRYFITAANARNKLVVIDTKE-GKLVAIEDTGGQTPHP--------G--R---GANFVHPTFGPVWATSHMGDDSVALIG 418 (567)
T ss_dssp SCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSSBCC--------T--T---CEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCC-CcEEEEEeccCcCCCC--------c--c---ceeeECCCCCcEEEeCCCCCCeEEEec
Confidence 99988754 38999999997 776666543 211100 0 0 223 578754 444543 568999999
Q ss_pred cCCCc------eeeeeecCCCcceeEEEECCCCCceeecCC-------CCeEEEeeCCCC-----Ccc-c-cCC----cc
Q 010256 427 CSEGS------AESTTLEASKNPMRRQVQTPSRPSRPLGSL-------SGVVRRVKGADN-----SAL-D-ANG----NA 482 (514)
Q Consensus 427 ~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~-------d~~v~i~~~~~~-----~~~-~-~~~----~~ 482 (514)
..+.+ +...++......-..+..+|++++|.+... ...|.+++...+ ... + +.. ..
T Consensus 419 ~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~ 498 (567)
T 1qks_A 419 TDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI 498 (567)
T ss_dssp CCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTC
T ss_pred CCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccccc
Confidence 88732 233555544333345778999998877552 357777544433 100 0 100 00
Q ss_pred cccccceEEEEEcCCCCEEEEEe------cCcEEEEe
Q 010256 483 FDFSMKLLHLAWHPSENSIACAA------SNSLYMYY 513 (514)
Q Consensus 483 ~~~~~~v~~~~~spd~~~l~~~~------~~~~~i~~ 513 (514)
-+-...+.++.|+|+|+.+.++. ++.+.++.
T Consensus 499 ~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 499 TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 01246889999999999988763 46666664
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.69 E-value=4.3e-14 Score=126.94 Aligned_cols=245 Identities=10% Similarity=0.116 Sum_probs=162.4
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEe-cCCCcEEEEEec-CCe
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSS-KGS 306 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~-p~~~~~l~~~~~-dg~ 306 (514)
.++-..+.+++++++++++++. .++.|.+||.+ ++....+ ... ....++...+..+++. +++ +++++... ++.
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~-~~~-~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~ 101 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQF-GEC-GKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQ 101 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEE-CCB-SSSTTCBSSEEEEEEETTTT-EEEEEECGGGCE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEe-ccc-CCCcccccCceEEEEEcCCC-eEEEEcCCCCCE
Confidence 3455678999999999988887 89999999987 4332221 110 0112344568999995 666 66666543 899
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccc
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL 385 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~ 385 (514)
|.+|| .+++.. ..+.. .+...+.+++++|+|+++++... +.|.+||.. ++.+..+......
T Consensus 102 i~~~d-~~g~~~----~~~~~-----------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~ 163 (286)
T 1q7f_A 102 IQIYN-QYGQFV----RKFGA-----------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGCSKHL 163 (286)
T ss_dssp EEEEC-TTSCEE----EEECT-----------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECTTTC
T ss_pred EEEEC-CCCcEE----EEecC-----------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC--CCEEEEeCCCCcc
Confidence 99999 444432 22211 11246789999999998877654 899999965 5555544321111
Q ss_pred ccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec--CCCcceeEEEECCCCCceeecCCCC
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPSRPSRPLGSLSG 463 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~s~d~ 463 (514)
.....++++++|+++++...++.|++||.... ....+. ++...+..++++++++++++...++
T Consensus 164 -------------~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~ 228 (286)
T 1q7f_A 164 -------------EFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ--YLRQIGGEGITNYPIGVGINSNGEILIADNHNN 228 (286)
T ss_dssp -------------SSEEEEEECSSSEEEEEEGGGTEEEEEETTCC--EEEEESCTTTSCSEEEEEECTTCCEEEEECSSS
T ss_pred -------------CCcEEEEECCCCCEEEEECCCCEEEEEcCCCC--EEEEEccCCccCCCcEEEECCCCCEEEEeCCCC
Confidence 11338999999998888888999999998532 233443 3346788999999999999888876
Q ss_pred -eEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 464 -VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 464 -~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
.|++++........+.. ......+..++++|+|+++++..++.+.+|.
T Consensus 229 ~~i~~~~~~g~~~~~~~~--~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~ 277 (286)
T 1q7f_A 229 FNLTIFTQDGQLISALES--KVKHAQCFDVALMDDGSVVLASKDYRLYIYR 277 (286)
T ss_dssp CEEEEECTTSCEEEEEEE--SSCCSCEEEEEEETTTEEEEEETTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEcc--cCCCCcceeEEECCCCcEEEECCCCeEEEEE
Confidence 88884321100000100 0112347899999999988886677888885
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.68 E-value=3.9e-14 Score=129.83 Aligned_cols=259 Identities=9% Similarity=0.078 Sum_probs=166.8
Q ss_pred cceEEEEEcCCCCeEEEecCC------------------------CeEEEEEecCCcccCCcccccccccccccCCccce
Q 010256 36 DIISAIEFDKSGDHLATGDRG------------------------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (514)
..|.+|+++|+|+++++...+ +.|.+||..+++.
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~---------------------- 81 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI---------------------- 81 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE----------------------
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE----------------------
Confidence 569999999999999888777 3677887665552
Q ss_pred eeeeec-cCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccE-EEEEeeccCCCccccCCcceec
Q 010256 92 YKTEFQ-SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFG 169 (514)
Q Consensus 92 ~~~~~~-~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~v~~ 169 (514)
...+. ++- .....+++ +++|.++++...++.|++|+..... ........
T Consensus 82 -~~~~~~~~~------------~~p~gia~--d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~-------------- 132 (329)
T 3fvz_A 82 -LQSSGKNLF------------YLPHGLSI--DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRS-------------- 132 (329)
T ss_dssp -EEEECTTTC------------SSEEEEEE--CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBT--------------
T ss_pred -EeccCCCcc------------CCceEEEE--CCCCCEEEEECCCCEEEEEeCCCCeEEEEEeccc--------------
Confidence 12222 221 45788999 5677788888888999999975431 11110000
Q ss_pred ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEE
Q 010256 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETF 248 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l 248 (514)
+ ..+. ..++-.....++++| ++.++
T Consensus 133 -------------~---------------~~g~--------------------------~~~~~~~P~~ia~~~~~g~ly 158 (329)
T 3fvz_A 133 -------------M---------------QPGS--------------------------DQNHFCQPTDVAVEPSTGAVF 158 (329)
T ss_dssp -------------T---------------BCCC--------------------------STTCCSSEEEEEECTTTCCEE
T ss_pred -------------C---------------CCCC--------------------------CccccCCCcEEEEeCCCCeEE
Confidence 0 0000 012335678999999 78888
Q ss_pred EEe--cCCeEEEEeccCCCceeeeeccCCC---cccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccc
Q 010256 249 ISA--DDLRINLWNLEISNQSFNIVDVKPA---NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 323 (514)
Q Consensus 249 ~s~--~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 323 (514)
++. .++.|++|+.. +... ..+..... ...++-..+..++++|+++.++++...++.|++||..+++.. .
T Consensus 159 v~d~~~~~~I~~~~~~-g~~~-~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~----~ 232 (329)
T 3fvz_A 159 VSDGYCNSRIVQFSPS-GKFV-TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV----R 232 (329)
T ss_dssp EEECSSCCEEEEECTT-SCEE-EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----E
T ss_pred EEeCCCCCeEEEEcCC-CCEE-EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE----E
Confidence 876 48999999954 4332 22110000 001123458899999993388888888999999999877653 2
Q ss_pred ceeccCCCCccceeeccccceeEEEEecCCCEEEEE-------eC-CeEEEEEccCCCCceeeeeecccccccccccccc
Q 010256 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-------DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEN 395 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-------~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (514)
.+... .+...+.+++|+| +..+++. .. .+|++||..+ ++.+..+.....
T Consensus 233 ~~~~~----------~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~----------- 289 (329)
T 3fvz_A 233 EIKHA----------SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFKPVRK----------- 289 (329)
T ss_dssp EECCT----------TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-CCEEEEECCSSS-----------
T ss_pred EEecc----------ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEcCCCC-----------
Confidence 22211 2234678899998 4333332 22 5899999987 777766632111
Q ss_pred CCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 396 DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 396 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
.......++++|+|.++++...+++|++|++..
T Consensus 290 -~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 290 -HFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp -CCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred -ccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 011133899999998888888999999999863
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=1.4e-14 Score=146.61 Aligned_cols=183 Identities=11% Similarity=0.078 Sum_probs=122.1
Q ss_pred CCCCCE-EEEe--cCCeEEEEecc--CCCceeeeeccCCCcccc-----cCCceEEEEEecCCCcEEEEEecC-------
Q 010256 242 NSDGET-FISA--DDLRINLWNLE--ISNQSFNIVDVKPANMED-----LTEVITSAEFHPTHCNMLAYSSSK------- 304 (514)
Q Consensus 242 ~~~~~~-l~s~--~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~-----~~~~i~~v~~~p~~~~~l~~~~~d------- 304 (514)
||||+. |+.+ .+..|.++++. ...... .+.. +...+..++|+||| +.|++++.+
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~--------~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~ 157 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPR--------PLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPS 157 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCE--------ECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTT
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCE--------eccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCC
Confidence 499998 7766 35667777664 202222 2222 45678899999999 788888876
Q ss_pred ---CeEEEEEcCC------CccccccccceeccCCCCccceee-ccccceeEEEEecCCCEEEEEe-C--------CeEE
Q 010256 305 ---GSIRLIDMRQ------SALCDTHSKLFEEQEAPGTRSFFT-EIIASISDIKFARNGRHILSRD-Y--------MTLK 365 (514)
Q Consensus 305 ---g~i~~wd~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~g~~l~~~~-~--------~~i~ 365 (514)
..|++||+.+ +.. .. +. .+...+..++|||||++|+..+ + ..|+
T Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~-----~~------------l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~ 220 (662)
T 3azo_A 158 DVRRFLAAVPLDGSAAADRSAV-----RE------------LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELK 220 (662)
T ss_dssp CEEEEEEEEETTSTTTTCGGGS-----EE------------SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEE
T ss_pred CceeEEEEEECCCCccccCCce-----eE------------EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEE
Confidence 5899999987 432 11 11 2224678899999999998753 2 3799
Q ss_pred EEEccCCCC--ceeeee-eccccccccccccccCCccceeeEEEcCCCCEEEEEeCCC--cEEEEecCCCceeeeeecCC
Q 010256 366 LWDINMDSG--PVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN--LFRVFGCSEGSAESTTLEAS 440 (514)
Q Consensus 366 iwd~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~ 440 (514)
+||+...+. ....+. .+... +..++|+|||+++++++.++ .|++||+.+++.. .....+
T Consensus 221 ~~d~~~~g~~~~~~~l~~~~~~~---------------~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~ 284 (662)
T 3azo_A 221 TARVTEDGRFADTRTLLGGPEEA---------------IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT-QLCRRE 284 (662)
T ss_dssp EEEECTTSCEEEEEEEEEETTBC---------------EEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE-ESSCCS
T ss_pred EEEECCCCcccccEEeCCCCCce---------------EcceEECCCCeEEEEECCCCCeEEEEEECCCCcee-eccccc
Confidence 999983141 223332 22222 33799999999888888888 6677776555332 233333
Q ss_pred Ccc--------eeEEEECCCCCceeecCCCCeEEE
Q 010256 441 KNP--------MRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 441 ~~~--------v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
... +..++++|+++++++++. +.+++
T Consensus 285 ~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l 318 (662)
T 3azo_A 285 EEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL 318 (662)
T ss_dssp SBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred ccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence 222 467889999999999998 88888
No 177
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.67 E-value=1.6e-13 Score=126.27 Aligned_cols=270 Identities=12% Similarity=0.048 Sum_probs=167.9
Q ss_pred ceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCC
Q 010256 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 254 (514)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~ 254 (514)
++.|++++..+ +....++.++.|. ...... +..+...+.+++|++++++++++ .++
T Consensus 10 ~~~~~~~~~~~------------~~~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~g~l~~~~~~~~ 66 (333)
T 2dg1_A 10 TLFYSGKSNSA------------VPIISESELQTIT----------AEPWLE-ISKKGLQLEGLNFDRQGQLFLLDVFEG 66 (333)
T ss_dssp BCCSCGGGGCS------------SCCCCGGGSCEEE----------CEEEEE-EESSCCCEEEEEECTTSCEEEEETTTC
T ss_pred eeeecCCccce------------eEEeecccCcccc----------cceeEE-EeccCccccCcEECCCCCEEEEECCCC
Confidence 67788887776 6666777777664 111112 23455667899999999988888 889
Q ss_pred eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC----CeEEEEEcCCCccccccccceeccCC
Q 010256 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----GSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
.|.+||.++++.. .+ ...+...+.+++++|++ +++++...+ +.|.+||..++... ..+...
T Consensus 67 ~i~~~d~~~~~~~-~~-------~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~----~~~~~~-- 131 (333)
T 2dg1_A 67 NIFKINPETKEIK-RP-------FVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQ----DIIEDL-- 131 (333)
T ss_dssp EEEEECTTTCCEE-EE-------EECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCE----EEECSS--
T ss_pred EEEEEeCCCCcEE-EE-------eeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEE----EEEccC--
Confidence 9999999855432 21 11245679999999998 777776666 68999998876531 011100
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEeC-----CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEE
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRDY-----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (514)
.+...+.+++++|+|+++++... ....||.+...+..+..+...... ...++
T Consensus 132 --------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------~~~i~ 188 (333)
T 2dg1_A 132 --------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISV---------------ANGIA 188 (333)
T ss_dssp --------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESS---------------EEEEE
T ss_pred --------ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCc---------------ccceE
Confidence 01246889999999998887542 133444443322233333221111 22799
Q ss_pred EcCCCCEEE-EEeCCCcEEEEecCC-Cceee-------eeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCcc
Q 010256 406 LSGDGGRVA-TGSYSNLFRVFGCSE-GSAES-------TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL 476 (514)
Q Consensus 406 ~s~~~~~l~-s~~~dg~i~iwd~~~-~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~ 476 (514)
|+|+|++|+ +.+.++.|++|++.+ +.... ..+.++ ..+..+++.++++++++...++.|.+++.......
T Consensus 189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~ 267 (333)
T 2dg1_A 189 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIG 267 (333)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEE
T ss_pred ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEE
Confidence 999998654 445678999999964 22211 111222 35678999999998888877888887432110000
Q ss_pred ccCCcc--cccccceEEEEEcCCCCEEEEEecC
Q 010256 477 DANGNA--FDFSMKLLHLAWHPSENSIACAASN 507 (514)
Q Consensus 477 ~~~~~~--~~~~~~v~~~~~spd~~~l~~~~~~ 507 (514)
.+.... .++...+.+++|+||++.|.+++.+
T Consensus 268 ~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 268 QILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 111000 0111268999999998887766544
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.66 E-value=1e-13 Score=127.09 Aligned_cols=214 Identities=10% Similarity=0.052 Sum_probs=140.2
Q ss_pred cCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccC--CCcccccCCceEEEEEec-CCCcEEEEEe-cCC
Q 010256 231 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK--PANMEDLTEVITSAEFHP-THCNMLAYSS-SKG 305 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~i~~v~~~p-~~~~~l~~~~-~dg 305 (514)
++-..+..++++|+|+++++. .++.|++||..........+... +..-..+...+..++++| ++ .++++.+ .++
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~ 166 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNS 166 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSCC
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCCC
Confidence 344578899999999988888 78999999986332122221100 000123445689999999 66 7888876 699
Q ss_pred eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC-CCEEEEEeC-CeEEEEEccCCCCceeeeeecc
Q 010256 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRDY-MTLKLWDINMDSGPVATFQVHE 383 (514)
Q Consensus 306 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~ 383 (514)
.|++||. ++... ..+....... ....++......++++|+ +.++++... ++|++||..+ ++.+..+....
T Consensus 167 ~I~~~~~-~g~~~----~~~~~~g~~~--~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~-G~~~~~~~~~~ 238 (329)
T 3fvz_A 167 RIVQFSP-SGKFV----TQWGEESSGS--SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT-KEFVREIKHAS 238 (329)
T ss_dssp EEEEECT-TSCEE----EEECEECCSS--SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT-CCEEEEECCTT
T ss_pred eEEEEcC-CCCEE----EEeccCCCCC--CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC-CcEEEEEeccc
Confidence 9999994 44432 2222111000 000122245889999998 665555544 8999999986 77777664332
Q ss_pred ccccccccccccCCccceeeEEEcC------CCCEEEEEeCCCcEEEEecCCCceeeeee---cCCCcceeEEEECCCCC
Q 010256 384 HLRPKLCDLYENDSIFDKFECCLSG------DGGRVATGSYSNLFRVFGCSEGSAESTTL---EASKNPMRRQVQTPSRP 454 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~ 454 (514)
... .+..++|+| +|+.+++...+..|++|+..+++.. ..+ .++...+..++++|++.
T Consensus 239 ~~~-------------~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~-~~~~~~~~~~~~p~~ia~~~dG~ 304 (329)
T 3fvz_A 239 FGR-------------NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEII-DVFKPVRKHFDMPHDIVASEDGT 304 (329)
T ss_dssp TTT-------------CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEE-EEECCSSSCCSSEEEEEECTTSE
T ss_pred cCC-------------CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEE-EEEcCCCCccCCeeEEEECCCCC
Confidence 110 133788888 3443333344568999999887543 454 46777789999999999
Q ss_pred ceeecCCCCeEEE
Q 010256 455 SRPLGSLSGVVRR 467 (514)
Q Consensus 455 ~l~s~s~d~~v~i 467 (514)
++++...++.|++
T Consensus 305 lyvad~~~~~I~~ 317 (329)
T 3fvz_A 305 VYIGDAHTNTVWK 317 (329)
T ss_dssp EEEEESSSCCEEE
T ss_pred EEEEECCCCEEEE
Confidence 8999888888888
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.65 E-value=1.2e-13 Score=124.67 Aligned_cols=241 Identities=9% Similarity=0.024 Sum_probs=160.7
Q ss_pred ccccceEEEEEcCCCC-eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 33 QEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
.+.....+++|+|+|+ +++++..++.|..|+..++ . ..+..+.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~------------------------~~~~~~~----------- 68 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L------------------------SPEMHPS----------- 68 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E------------------------EEEESSC-----------
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e------------------------EEEECCC-----------
Confidence 3456788999999998 7888888999999997654 2 2233333
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..+.++++ +++|.++++...++.|.+||..+++.........
T Consensus 69 -~~~~~l~~--~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~----------------------------------- 110 (296)
T 3e5z_A 69 -HHQNGHCL--NKQGHLIACSHGLRRLERQREPGGEWESIADSFE----------------------------------- 110 (296)
T ss_dssp -SSEEEEEE--CTTCCEEEEETTTTEEEEECSTTCCEEEEECEET-----------------------------------
T ss_pred -CCcceeeE--CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccC-----------------------------------
Confidence 56889999 5677777777777899999997776433211100
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEE----e-c-------------C
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS----A-D-------------D 253 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s----~-~-------------d 253 (514)
......+.+++++|+|+++++ | . .
T Consensus 111 --------------------------------------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~ 152 (296)
T 3e5z_A 111 --------------------------------------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPG 152 (296)
T ss_dssp --------------------------------------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSS
T ss_pred --------------------------------------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCC
Confidence 000123556788888887776 2 1 2
Q ss_pred CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC-CCcc-ccccccceeccCCC
Q 010256 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR-QSAL-CDTHSKLFEEQEAP 331 (514)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~-~~~~-~~~~~~~~~~~~~~ 331 (514)
+.|..++.. ..... +..+......++|+|++ +.+++.+.++.|.+||+. ++.. .. ...+.
T Consensus 153 ~~l~~~~~~--g~~~~--------~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~--~~~~~----- 214 (296)
T 3e5z_A 153 RWVFRLAPD--GTLSA--------PIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQ--GVHFT----- 214 (296)
T ss_dssp CEEEEECTT--SCEEE--------EECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEE--EEEEC-----
T ss_pred cEEEEECCC--CCEEE--------eecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCC--CeEee-----
Confidence 455555554 22221 22344567899999999 677777788999999997 3332 10 11111
Q ss_pred CccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE-cCCC
Q 010256 332 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL-SGDG 410 (514)
Q Consensus 332 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~ 410 (514)
.+...+..++++++|+++++. ++.|.+||.. ++.+..+..+.. .. +++| +|++
T Consensus 215 -------~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~--g~~~~~~~~~~~-~~---------------~~~f~~~d~ 268 (296)
T 3e5z_A 215 -------VEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD--GDELGRVLTPQT-TS---------------NLCFGGPEG 268 (296)
T ss_dssp -------CSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT--SCEEEEEECSSC-CC---------------EEEEESTTS
T ss_pred -------CCCCCCCeEEECCCCCEEEEc-CCeEEEECCC--CCEEEEEECCCC-ce---------------eEEEECCCC
Confidence 122456789999999987777 8899999986 666766665543 22 7889 5899
Q ss_pred CEEEEEeCCCcEEEEecCCC
Q 010256 411 GRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 411 ~~l~s~~~dg~i~iwd~~~~ 430 (514)
+.|++++.+ .+.-++.++.
T Consensus 269 ~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 269 RTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp CEEEEEETT-EEEEEECSCC
T ss_pred CEEEEEcCC-eEEEEEcccc
Confidence 988888775 4555555543
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.64 E-value=1.4e-13 Score=124.29 Aligned_cols=237 Identities=9% Similarity=0.023 Sum_probs=154.6
Q ss_pred cCccCeEEEEECCCCC-EEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010256 231 AHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
.+.....+++|+|+++ +++++ .++.|..|+..++ . . .+..+...+.+++++|+| +++++...++.|.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~-~-------~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L-S-------PEMHPSHHQNGHCLNKQG-HLIACSHGLRRLE 93 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--E-E-------EEESSCSSEEEEEECTTC-CEEEEETTTTEEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--e-E-------EEECCCCCcceeeECCCC-cEEEEecCCCeEE
Confidence 3445678999999998 66777 8999999999854 2 2 123345678999999999 7777776778999
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE----Ee-----------C-CeEEEEEccCC
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS----RD-----------Y-MTLKLWDINMD 372 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~----~~-----------~-~~i~iwd~~~~ 372 (514)
+||..+++.. ....... ......+..++++|+|+++++ |. + +.-.||.+...
T Consensus 94 ~~d~~~g~~~----~~~~~~~--------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 94 RQREPGGEWE----SIADSFE--------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD 161 (296)
T ss_dssp EECSTTCCEE----EEECEET--------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred EEcCCCCcEE----EEeeccC--------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC
Confidence 9999777632 1111000 001135678999999998887 22 0 12245555432
Q ss_pred CCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC-CCce-e-eeeecCCCcceeEEEE
Q 010256 373 SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS-EGSA-E-STTLEASKNPMRRQVQ 449 (514)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~-~-~~~~~~~~~~v~~~~~ 449 (514)
..+..+..+... ...++|+|||+.|++.+.++.|++|++. ++.. . ...+..+...+..+++
T Consensus 162 -g~~~~~~~~~~~---------------~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~ 225 (296)
T 3e5z_A 162 -GTLSAPIRDRVK---------------PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRV 225 (296)
T ss_dssp -SCEEEEECCCSS---------------EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEE
T ss_pred -CCEEEeecCCCC---------------CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEE
Confidence 223333222111 2279999999998777788999999987 3422 1 2233445556778999
Q ss_pred CCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEE-cCCCCEEEEEecCcEEEEe
Q 010256 450 TPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW-HPSENSIACAASNSLYMYY 513 (514)
Q Consensus 450 ~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~-spd~~~l~~~~~~~~~i~~ 513 (514)
.++|+++++. ++.|.+++-. . ........+.. +.+++| +|+++.|.+++.++++-+.
T Consensus 226 d~~G~l~v~~--~~~v~~~~~~---g-~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~ 283 (296)
T 3e5z_A 226 DAGGLIWASA--GDGVHVLTPD---G-DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIE 283 (296)
T ss_dssp BTTSCEEEEE--TTEEEEECTT---S-CEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEE
T ss_pred CCCCCEEEEc--CCeEEEECCC---C-CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEE
Confidence 9999977776 6777773221 1 01111111334 899999 6899999999988877653
No 181
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.63 E-value=4.8e-12 Score=114.24 Aligned_cols=277 Identities=7% Similarity=-0.009 Sum_probs=182.1
Q ss_pred cccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
+...+.+++++++|+++++...++.|.+|+.. ++.. . .....+. .
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~---------------------~-~~~~~~~------------~ 57 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT---------------------E-YPLPTPD------------A 57 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE---------------------E-EECSSTT------------C
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE---------------------E-ecCCccc------------C
Confidence 34679999999999988877668899999976 3321 0 0111122 5
Q ss_pred ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
.+..+++ .++|.++++...++.|..|+.. ++.... ..
T Consensus 58 ~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~-~~--------------------------------------- 94 (299)
T 2z2n_A 58 KVMCLTI--SSDGEVWFTENAANKIGRITKK-GIIKEY-TL--------------------------------------- 94 (299)
T ss_dssp CEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEE-EC---------------------------------------
T ss_pred ceeeEEE--CCCCCEEEeCCCCCeEEEECCC-CcEEEE-eC---------------------------------------
Confidence 5888888 5677777776667888888875 321110 00
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeec
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 272 (514)
......+.++++++++.++++. .++.|..||. ++... ..
T Consensus 95 ------------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~-- 134 (299)
T 2z2n_A 95 ------------------------------------PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EY-- 134 (299)
T ss_dssp ------------------------------------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EE--
T ss_pred ------------------------------------CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-Ee--
Confidence 0112356789999999888887 7889999998 33322 11
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 352 (514)
........+..+++.+++ +++++...++.|..||. +++.. .+... .....+.+++++++
T Consensus 135 ----~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~~----------~~~~~~~~i~~~~~ 193 (299)
T 2z2n_A 135 ----ELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDIT-----EFKIP----------TPASGPVGITKGND 193 (299)
T ss_dssp ----ECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEE-----EEECS----------STTCCEEEEEECTT
T ss_pred ----cCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEE-----EeeCC----------CCCCcceeEEECCC
Confidence 112234568999999998 77777777889999998 55432 11111 11245788999999
Q ss_pred CCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCc
Q 010256 353 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (514)
Q Consensus 353 g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 431 (514)
|++.++.. .+.|.+||. + ++.. .+..... ...+..++++++|+++++...++.|..||.. +.
T Consensus 194 g~l~v~~~~~~~i~~~~~-~-g~~~-~~~~~~~-------------~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~ 256 (299)
T 2z2n_A 194 DALWFVEIIGNKIGRITT-S-GEIT-EFKIPTP-------------NARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI 256 (299)
T ss_dssp SSEEEEETTTTEEEEECT-T-CCEE-EEECSST-------------TCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE
T ss_pred CCEEEEccCCceEEEECC-C-CcEE-EEECCCC-------------CCCceeEEECCCCCEEEeccCCceEEEECCC-Cc
Confidence 99777764 489999998 4 4422 2211110 0113489999999977776678899999983 43
Q ss_pred eeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 432 AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 432 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.....+..+...+..+++ +++.+.++.+.++.+++
T Consensus 257 ~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 257 IEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp EEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred eEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence 222223455567889999 88888777665666555
No 182
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.63 E-value=1e-14 Score=137.76 Aligned_cols=217 Identities=11% Similarity=0.055 Sum_probs=125.9
Q ss_pred EEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEE-------------------EEEecCCCcEE
Q 010256 239 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITS-------------------AEFHPTHCNML 298 (514)
Q Consensus 239 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~-------------------v~~~p~~~~~l 298 (514)
+.|+|||+.|+.+ .++.|++||+.+++.. .+.. .+...... +.|+|++ +.+
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~-~~~~-------~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~ 156 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQ-VIYT-------VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWE 156 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEE-EEEE-------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHH
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcE-EEEe-------cccccCCCCCEEEeccCCccccccccccccCCCC-cce
Confidence 4577777777766 6667888887644322 2111 01111111 3456776 444
Q ss_pred EEE-----ecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec-CCCEEEEEeC-------CeEE
Q 010256 299 AYS-----SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-------MTLK 365 (514)
Q Consensus 299 ~~~-----~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~-------~~i~ 365 (514)
+.. ..+..|.+||+.+++.. . +..+...+..+.|+| +++.|+..++ ..|.
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~~----~-------------~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~ 219 (396)
T 3c5m_A 157 KFAEFYHTNPTCRLIKVDIETGELE----V-------------IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMW 219 (396)
T ss_dssp HHHHHHHTCCCEEEEEEETTTCCEE----E-------------EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCE
T ss_pred eeeeeccCCCcceEEEEECCCCcEE----e-------------eccCCcccccceECCCCCCEEEEEecCCCCCCCceEE
Confidence 433 35668999999876532 1 112235688999999 7887766432 3678
Q ss_pred EEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC-----CcEEEEecCCCceeeeeecCC
Q 010256 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----NLFRVFGCSEGSAESTTLEAS 440 (514)
Q Consensus 366 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~ 440 (514)
+||+.. ++ ...+..+... ..+..++|+|||++|+.++.+ +.|++||+.+++... .....
T Consensus 220 ~~d~~~-~~-~~~l~~~~~~-------------~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~ 283 (396)
T 3c5m_A 220 LVNEDG-SN-VRKIKEHAEG-------------ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE-VMVMP 283 (396)
T ss_dssp EEETTS-CC-CEESSCCCTT-------------EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE-EEECC
T ss_pred EEECCC-Cc-eeEeeccCCC-------------ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE-eeeCC
Confidence 888764 33 2222222100 013378999999988776543 449999998774332 11111
Q ss_pred CcceeEEEECC-CCCceeecC----------------CCCeEEEeeC--CCCCccccCCccccccc-----------ceE
Q 010256 441 KNPMRRQVQTP-SRPSRPLGS----------------LSGVVRRVKG--ADNSALDANGNAFDFSM-----------KLL 490 (514)
Q Consensus 441 ~~~v~~~~~~~-~~~~l~s~s----------------~d~~v~i~~~--~~~~~~~~~~~~~~~~~-----------~v~ 490 (514)
. .. ..|+| +++++++++ .+..+.+++. .... . ...+.. .+.
T Consensus 284 -~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~----l~~~~~~~~~~~~~~~~~~~ 354 (396)
T 3c5m_A 284 -P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ--K----LCKHSTSWDVLDGDRQITHP 354 (396)
T ss_dssp -S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC--E----EEECCCCCCCBTTBSSTTCC
T ss_pred -C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE--E----ccCCCCccccccccccCCCC
Confidence 1 22 78999 999888754 2356766332 2211 1 111222 256
Q ss_pred EEEEcCCCCEEEEEec
Q 010256 491 HLAWHPSENSIACAAS 506 (514)
Q Consensus 491 ~~~~spd~~~l~~~~~ 506 (514)
.++|+|||+.|+.++.
T Consensus 355 ~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 355 HPSFTPNDDGVLFTSD 370 (396)
T ss_dssp CCEECTTSSEEEEEEC
T ss_pred CceEccCCCeEEEEec
Confidence 7899999999987763
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.62 E-value=2.7e-13 Score=125.47 Aligned_cols=282 Identities=10% Similarity=0.027 Sum_probs=158.5
Q ss_pred ccccccceEEEEEcCCCCeEEEec---------CCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCC
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGD---------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEP 101 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 101 (514)
++.....+..+++ ||+++|... .++.|.+|++.+++.. .+
T Consensus 10 ~l~~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~------------------------~l----- 58 (347)
T 2gop_A 10 TFAKFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR------------------------FI----- 58 (347)
T ss_dssp CCCCSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE------------------------EE-----
T ss_pred cceeeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE------------------------Ec-----
Confidence 3344567888888 899888753 2567889998765421 11
Q ss_pred ccccccccccccceeEEEEeeCCCCcEEEEeeCC---C--eEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCc
Q 010256 102 EFDYLKSLEIEEKINKIRWCQSANSALYLLSTND---K--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (514)
Q Consensus 102 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (514)
..+..++| +++|++|+.++.+ + .|.+|++.+++...+.... . +. .
T Consensus 59 -----------~~~~~~~~--SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~---------~-~~-------~ 108 (347)
T 2gop_A 59 -----------ENATMPRI--SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK---------N-IR-------S 108 (347)
T ss_dssp -----------ESCEEEEE--CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES---------E-EE-------E
T ss_pred -----------ccCCCeEE--CCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC---------C-cc-------c
Confidence 22778899 6788888877543 3 4777888887765544322 1 22 5
Q ss_pred eeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeE
Q 010256 177 KSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRI 256 (514)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i 256 (514)
+.|+|||+.+ +....+. .. ......+..+.|..++.-+.......|
T Consensus 109 ~~wspdg~~l------------~~~~~~~-----------~~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (347)
T 2gop_A 109 LEWNEDSRKL------------LIVGFKR-----------RE-----------DEDFIFEDDVPAWFDDLGFFDGEKTTF 154 (347)
T ss_dssp EEECTTSSEE------------EEEEECC-----------CC--------------------CCCC---------CEEEE
T ss_pred eeECCCCCEE------------EEEEccC-----------CC-----------cCCcEEEcccceeecCcccccCccceE
Confidence 6677777655 2111000 00 000001112222223322222234679
Q ss_pred EEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC-------eEEEEEcCCCccccccccceeccC
Q 010256 257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-------SIRLIDMRQSALCDTHSKLFEEQE 329 (514)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg-------~i~~wd~~~~~~~~~~~~~~~~~~ 329 (514)
.+||+.+++....+ .. . .+..+.|+|+| +++++..++ ...||.+.+++. ..
T Consensus 155 ~~~d~~~~~~~~~l--------~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~-----~~----- 212 (347)
T 2gop_A 155 WIFDTESEEVIEEF--------EK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKE-----EK----- 212 (347)
T ss_dssp EEEETTTTEEEEEE--------EE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEE-----EE-----
T ss_pred EEEECCCCeEEeee--------cC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCce-----EE-----
Confidence 99999855431222 22 2 67889999997 666665542 345554443332 11
Q ss_pred CCCccceeeccccceeEEEEecCCCEEEEEe-C--------CeEEEEEccCCCCceeeeeeccccccccccccccCCccc
Q 010256 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-Y--------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 400 (514)
Q Consensus 330 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
+..+ ..+..+ +|+|+.|+..+ + ..|.+|| . ++.......+...
T Consensus 213 -------l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~--------------- 264 (347)
T 2gop_A 213 -------MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRG--------------- 264 (347)
T ss_dssp -------EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSE---------------
T ss_pred -------eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCCcc---------------
Confidence 1122 334444 99999888753 2 3677777 3 4433322222221
Q ss_pred eee-EEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCe
Q 010256 401 KFE-CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (514)
Q Consensus 401 v~~-~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~ 464 (514)
+.. +.|+ |+ ++++++.++.++|| +.++ .. ..+..+...+..+.++| .++++++.++.
T Consensus 265 ~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g-~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~ 322 (347)
T 2gop_A 265 VGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG-EI-KPIAKGRHWIMGFDVDE--IVVYLKETATR 322 (347)
T ss_dssp EEEEEEET-TE-EEEEEEETTEEEEE-EESS-SE-EEEECSSSEEEEEEESS--SEEEEEECSSS
T ss_pred cCCccEEc-Cc-EEEEEecCCcEEEE-EcCC-ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCC
Confidence 234 8899 88 88999999999999 8754 33 33444577889999999 66666665554
No 184
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.61 E-value=1.6e-11 Score=110.73 Aligned_cols=233 Identities=8% Similarity=-0.029 Sum_probs=155.9
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
..+.++++++++.++++. .++.|..||.. ++ ...+ .+......+.++++.|++ .++++...++.|..||.
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~------~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~ 127 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKK-GI-IKEY------TLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD 127 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEE------ECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc-EEEE------eCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC
Confidence 457789999999988887 68999999986 22 2111 112234578999999998 77777777889999998
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
+++.. .+.. ......+..++++++|+++++... +.|..||. . ++... +.....
T Consensus 128 -~g~~~-----~~~~----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~-g~~~~-~~~~~~------- 181 (299)
T 2z2n_A 128 -DGKIR-----EYEL----------PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S-GDITE-FKIPTP------- 181 (299)
T ss_dssp -TCCEE-----EEEC----------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T-CCEEE-EECSST-------
T ss_pred -CCCEE-----EecC----------CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C-CcEEE-eeCCCC-------
Confidence 54421 1111 111246889999999988887654 89999998 4 44332 211110
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCC
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 471 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~ 471 (514)
...+..++++++|+++++...++.|.+||. ++......+..+...+..+++.++++++++...++.|..++..
T Consensus 182 ------~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 182 ------ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp ------TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred ------CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 011337999999998777767889999999 5543322344455678899999999987777667777774321
Q ss_pred -CCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 472 -DNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 472 -~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
... .+. .......+.++++ +++++.++...+++..|.
T Consensus 255 g~~~--~~~--~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~ 292 (299)
T 2z2n_A 255 NIIE--EYP--IQIKSAEPHGICF-DGETIWFAMECDKIGKLT 292 (299)
T ss_dssp TEEE--EEE--CSSSSCCEEEEEE-CSSCEEEEETTTEEEEEE
T ss_pred CceE--EEe--CCCCCCccceEEe-cCCCEEEEecCCcEEEEE
Confidence 111 010 1123467899999 999887776677777764
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=2.1e-13 Score=138.77 Aligned_cols=161 Identities=10% Similarity=0.055 Sum_probs=101.1
Q ss_pred CccCeEEEEECCCCCEEEEe-c-----CCeEEEEeccC------CCceeeeeccCCCcccccCCceEEEEEecCCCcEEE
Q 010256 232 HDYHINSISNNSDGETFISA-D-----DLRINLWNLEI------SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA 299 (514)
Q Consensus 232 h~~~v~~~~~~~~~~~l~s~-~-----d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~ 299 (514)
|...+..+.|+|||++|+.+ . +..|++||+.+ +..... .+..+...+.. .|+|+| ..|+
T Consensus 231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-------~l~~~~~~~~~-~~s~dg-~~l~ 301 (710)
T 2xdw_A 231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV-------KLIDNFEGEYD-YVTNEG-TVFT 301 (710)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE-------EEECSSSSCEE-EEEEET-TEEE
T ss_pred CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE-------EeeCCCCcEEE-EEeccC-CEEE
Confidence 44557789999999998875 3 57899999985 321121 22334444444 488888 5555
Q ss_pred EEec-C---CeEEEEEcCCCccccccccceeccCCCCccceeeccc--cceeEEEEecCCCEEEEEe-CC--eEEEEEcc
Q 010256 300 YSSS-K---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII--ASISDIKFARNGRHILSRD-YM--TLKLWDIN 370 (514)
Q Consensus 300 ~~~~-d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~g~~l~~~~-~~--~i~iwd~~ 370 (514)
..+. + +.|.+||+.++... ..+.+ ..|. ..+..++|++++.++++.. ++ .|.+||+.
T Consensus 302 ~~s~~~~~~~~l~~~d~~~~~~~--~~~~l------------~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~ 367 (710)
T 2xdw_A 302 FKTNRHSPNYRLINIDFTDPEES--KWKVL------------VPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLA 367 (710)
T ss_dssp EEECTTCTTCEEEEEETTSCCGG--GCEEE------------ECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT
T ss_pred EEECCCCCCCEEEEEeCCCCCcc--cceec------------cCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECC
Confidence 4444 3 36999998775320 01111 1121 2577899997777777754 45 56677775
Q ss_pred CCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE-e---CCCcEEEEecCCCc
Q 010256 371 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-S---YSNLFRVFGCSEGS 431 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~---~dg~i~iwd~~~~~ 431 (514)
. ++.+..+..+... +..++++|+++.|+.. + ..+.|++||+.+++
T Consensus 368 ~-g~~~~~l~~~~~~---------------v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 368 T-GALLKIFPLEVGS---------------VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp T-CCEEEEECCCSSE---------------EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred C-CCEEEecCCCCce---------------EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 4 6666666554322 3378899999766533 2 34789999998775
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.58 E-value=1.5e-13 Score=139.40 Aligned_cols=251 Identities=10% Similarity=0.001 Sum_probs=151.0
Q ss_pred ccccceEEEEEcCCCCeEE-----EecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 33 QEVDIISAIEFDKSGDHLA-----TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~-----tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
+|...+.+++|||||++|| .|+.+..|++||+.+++... ...+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---------------------~~~~~~--------- 167 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---------------------VDVIEG--------- 167 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS---------------------SCCBSC---------
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC---------------------CcccCc---------
Confidence 4556799999999999999 44556789999998876310 000110
Q ss_pred ccccccceeEEEEeeCCCCcEEEEeeCCCe-------------EEEEEcCccEEEEEeeccCCCccccCCcceecccccC
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLSTNDKT-------------IKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~-------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (514)
.....++| ++||+.|+.++.|.. |++|++.+++...
T Consensus 168 -----~~~~~~~w--spDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~------------------------ 216 (695)
T 2bkl_A 168 -----GKYATPKW--TPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD------------------------ 216 (695)
T ss_dssp -----CTTCCCEE--CTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC------------------------
T ss_pred -----ccccceEE--ecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc------------------------
Confidence 11257889 678888998887765 7777765542100
Q ss_pred CceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cC
Q 010256 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD 253 (514)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d 253 (514)
..++. ...|...+..+.|+|||++|+.+ .+
T Consensus 217 --------------------------------~lv~~-----------------~~~~~~~~~~~~~SpDG~~l~~~~~~ 247 (695)
T 2bkl_A 217 --------------------------------TVVHE-----------------RTGDPTTFLQSDLSRDGKYLFVYILR 247 (695)
T ss_dssp --------------------------------EEEEC-----------------CCCCTTCEEEEEECTTSCCEEEEEEE
T ss_pred --------------------------------eEEEe-----------------cCCCCEEEEEEEECCCCCEEEEEEeC
Confidence 00000 12344567889999999998876 44
Q ss_pred C----eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe---cCCeEEEEEcCCCcccccccccee
Q 010256 254 L----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 254 ~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
+ .|.+|+..++. .. .+..+...+....+ +++ .+++... .++.|.+||+.++.... ...+
T Consensus 248 ~~~~~~l~~~~~~~~~-~~--------~l~~~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~~--~~~l- 313 (695)
T 2bkl_A 248 GWSENDVYWKRPGEKD-FR--------LLVKGVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARAS--WKEI- 313 (695)
T ss_dssp TTTEEEEEEECTTCSS-CE--------EEEECSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGGG--CEEE-
T ss_pred CCCceEEEEEcCCCCc-eE--------EeecCCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCccC--CeEE-
Confidence 4 56666554322 22 22334445556656 677 4444444 25789999987754210 0111
Q ss_pred ccCCCCccceeecc-ccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeE
Q 010256 327 EQEAPGTRSFFTEI-IASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (514)
Q Consensus 327 ~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (514)
+..+ ...+..++|+ ++.++++.. ++..+||.+...++....+..+... .+..+
T Consensus 314 ----------~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~--------------~v~~~ 368 (695)
T 2bkl_A 314 ----------VPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVG--------------AASNL 368 (695)
T ss_dssp ----------ECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSS--------------EECCC
T ss_pred ----------ecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCe--------------EEEEe
Confidence 1111 2457788888 666666654 5777777665335545444433111 12267
Q ss_pred EEcCCCCEEEEE----eCCCcEEEEecCCCce
Q 010256 405 CLSGDGGRVATG----SYSNLFRVFGCSEGSA 432 (514)
Q Consensus 405 ~~s~~~~~l~s~----~~dg~i~iwd~~~~~~ 432 (514)
+++|+++.|+.. ...+.|++||+.+++.
T Consensus 369 ~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 369 MGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp BSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred ecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 888999877632 2347899999987753
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.58 E-value=1.6e-11 Score=119.54 Aligned_cols=300 Identities=10% Similarity=0.050 Sum_probs=186.7
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEec--CCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERT--DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.....+..+.|+|||++|++++.|+.|.+||+. +.+. ...+...
T Consensus 194 ~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-----------------------v~~i~~G----------- 239 (567)
T 1qks_A 194 DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-----------------------VAEIKIG----------- 239 (567)
T ss_dssp ECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-----------------------EEEEECC-----------
T ss_pred eCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-----------------------eEEEecC-----------
Confidence 334467799999999999999999999999985 4332 2222221
Q ss_pred cccceeEEEEee--CCCCcEEEEee-CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 111 IEEKINKIRWCQ--SANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 111 ~~~~v~~i~~~~--~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
.....++|++ .++|++++++. .+++|.++|..+.+........... .++.
T Consensus 240 --~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~----------------------~~~~--- 292 (567)
T 1qks_A 240 --SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT----------------------YDEQ--- 292 (567)
T ss_dssp --SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC----------------------TTTC---
T ss_pred --CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc----------------------cccc---
Confidence 3357888841 05788888765 5699999999888766544322000 0000
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCc-cCeEEEEECCCCCEEEEe--cCCeEEEEeccCC
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA--DDLRINLWNLEIS 264 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~ 264 (514)
..|. ..+..+..++++..++.. .+|.|.++|....
T Consensus 293 ------------------------------------------~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~ 330 (567)
T 1qks_A 293 ------------------------------------------EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL 330 (567)
T ss_dssp ------------------------------------------CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS
T ss_pred ------------------------------------------cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCC
Confidence 0111 256678888887666555 7899999998754
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEE-EecCCeEEEEEcCCCccccccccceec-cCCCCccceeecccc
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKGSIRLIDMRQSALCDTHSKLFEE-QEAPGTRSFFTEIIA 342 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 342 (514)
+.. .+. .+ ........+.|+|++ ++|++ ...++.|.++|+.++++. ..++. ... .|.+
T Consensus 331 ~~~-~v~-----~i-~~~~~~~d~~~~pdg-r~~~va~~~sn~V~ViD~~t~kl~----~~i~vgg~~--------Phpg 390 (567)
T 1qks_A 331 NNL-KTT-----EI-SAERFLHDGGLDGSH-RYFITAANARNKLVVIDTKEGKLV----AIEDTGGQT--------PHPG 390 (567)
T ss_dssp SEE-EEE-----EE-ECCSSEEEEEECTTS-CEEEEEEGGGTEEEEEETTTTEEE----EEEECSSSS--------BCCT
T ss_pred ccc-eee-----ee-eccccccCceECCCC-CEEEEEeCCCCeEEEEECCCCcEE----EEEeccCcC--------CCCc
Confidence 322 111 11 123456788999999 55554 446889999999998753 22222 111 1211
Q ss_pred ceeEEEEecCCC-EEEEE--eCCeEEEEEccCC------CCceeeeeeccccccccccccccCCccceeeEEEcCCCCEE
Q 010256 343 SISDIKFARNGR-HILSR--DYMTLKLWDINMD------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (514)
Q Consensus 343 ~i~~~~~s~~g~-~l~~~--~~~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (514)
.-..+ ++|++. ..+++ ++++|.++|.... .+.+.++...... . ..+..+|++++|
T Consensus 391 ~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g-----------~----~~i~~~p~~~~l 454 (567)
T 1qks_A 391 RGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG-----------S----LFIKTHPNSQYL 454 (567)
T ss_dssp TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-----------C----CCEECCTTCSEE
T ss_pred cceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCC-----------C----EEEEeCCCCCeE
Confidence 11112 578744 44555 3489999998852 2344555443211 0 147889999998
Q ss_pred EEEeC-------CCcEEEEecCCC-----ceeeeeec--------CCCcceeEEEECCCCCceeecC-----CCCeEEEe
Q 010256 414 ATGSY-------SNLFRVFGCSEG-----SAESTTLE--------ASKNPMRRQVQTPSRPSRPLGS-----LSGVVRRV 468 (514)
Q Consensus 414 ~s~~~-------dg~i~iwd~~~~-----~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~s-----~d~~v~i~ 468 (514)
..... .++|.++|+.+. ......+. .-...+..+.|+|+|+++..+. .++.|.++
T Consensus 455 ~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~ 534 (567)
T 1qks_A 455 YVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVV 534 (567)
T ss_dssp EEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEE
T ss_pred EEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEE
Confidence 87652 469999999865 22212232 1245678999999999876653 36777775
Q ss_pred eCC
Q 010256 469 KGA 471 (514)
Q Consensus 469 ~~~ 471 (514)
+..
T Consensus 535 D~~ 537 (567)
T 1qks_A 535 DDK 537 (567)
T ss_dssp ETT
T ss_pred ECC
Confidence 443
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=3.2e-13 Score=136.95 Aligned_cols=239 Identities=8% Similarity=-0.021 Sum_probs=149.6
Q ss_pred ccCccCeEEEEECCCCCEEEE-----e-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec
Q 010256 230 HAHDYHINSISNNSDGETFIS-----A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS 303 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s-----~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~ 303 (514)
.+|...+..++|||||++|+. | ++.+|++||+.+++.... ..+... ....++|+||| +.|+.++.
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~------~~~~~~--~~~~~~wspDg-~~l~~~~~ 187 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV------DVIEGG--KYATPKWTPDS-KGFYYEWL 187 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS------CCBSCC--TTCCCEECTTS-SEEEEEEC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC------cccCcc--cccceEEecCC-CEEEEEEe
Confidence 345567889999999999994 3 357899999997653200 011111 12678999999 78888888
Q ss_pred CCe-------------EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CC----eEE
Q 010256 304 KGS-------------IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM----TLK 365 (514)
Q Consensus 304 dg~-------------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~----~i~ 365 (514)
|.. |++|++.++..... ..+.. ..+...+.++.|||||++|+..+ ++ .|.
T Consensus 188 d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--lv~~~----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~ 255 (695)
T 2bkl_A 188 PTDPSIKVDERPGYTTIRYHTLGTEPSKDT--VVHER----------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVY 255 (695)
T ss_dssp CCCTTSCGGGGGGGCEEEEEETTSCGGGCE--EEECC----------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEE
T ss_pred cCCCCCccccCCCCCEEEEEECCCCchhce--EEEec----------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEE
Confidence 765 99999987753211 11111 11234688999999999988753 23 566
Q ss_pred EEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe---CCCcEEEEecCCCce--eeeeecCC
Q 010256 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS---YSNLFRVFGCSEGSA--ESTTLEAS 440 (514)
Q Consensus 366 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~--~~~~~~~~ 440 (514)
+|+.. ......+..+.... ....+ ++|++++... .++.|++||+.++.. ....+..+
T Consensus 256 ~~~~~--~~~~~~l~~~~~~~---------------~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 317 (695)
T 2bkl_A 256 WKRPG--EKDFRLLVKGVGAK---------------YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED 317 (695)
T ss_dssp EECTT--CSSCEEEEECSSCC---------------EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC
T ss_pred EEcCC--CCceEEeecCCCce---------------EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC
Confidence 66543 23444454443221 14555 5666444443 257899999987642 12233333
Q ss_pred -CcceeEEEECCCCCceeecCCCCeEEE--ee--CCCCCccccCCcccccccceEEEEEcCCCCEEEEEec-----CcEE
Q 010256 441 -KNPMRRQVQTPSRPSRPLGSLSGVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-----NSLY 510 (514)
Q Consensus 441 -~~~v~~~~~~~~~~~l~s~s~d~~v~i--~~--~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~-----~~~~ 510 (514)
...+..+.++ ++.++++...|+..++ ++ +.... .+. ......|..++++||++.|+.... ..++
T Consensus 318 ~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~--~l~---~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~ 391 (695)
T 2bkl_A 318 SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVR--TVQ---LPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIY 391 (695)
T ss_dssp SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEE--ECC---CSSSSEECCCBSCTTCSEEEEEEEETTEEEEEE
T ss_pred CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeE--Eec---CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEE
Confidence 4567778887 7788899999999888 22 22111 111 112566788899999988774432 3566
Q ss_pred EEe
Q 010256 511 MYY 513 (514)
Q Consensus 511 i~~ 513 (514)
+|.
T Consensus 392 ~~d 394 (695)
T 2bkl_A 392 KTS 394 (695)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.57 E-value=4.6e-13 Score=136.27 Aligned_cols=241 Identities=8% Similarity=-0.048 Sum_probs=156.7
Q ss_pred ccCccCeEEEEECCCCCEEEEe-c-CC----eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec
Q 010256 230 HAHDYHINSISNNSDGETFISA-D-DL----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS 303 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~ 303 (514)
.+|...+..++|+|||++|+.+ + +| .|++||+.+++..... +. ...+..++|+||| +.|+.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-------~~--~~~~~~~~wspDg-~~l~~~~~ 190 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-------LE--RVKFSCMAWTHDG-KGMFYNAY 190 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-------EE--EECSCCEEECTTS-SEEEEEEC
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-------cc--CcccceEEEEeCC-CEEEEEEE
Confidence 3454567899999999999976 3 33 8999999866543211 11 1225679999999 78888877
Q ss_pred CCe----------------EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe------C
Q 010256 304 KGS----------------IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD------Y 361 (514)
Q Consensus 304 dg~----------------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~------~ 361 (514)
++. |++|++.++..... ..+... .|...+..+.|+|||++|+... +
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--~v~~~~----------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 258 (710)
T 2xdw_A 191 PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI--LCAEFP----------DEPKWMGGAELSDDGRYVLLSIREGCDPV 258 (710)
T ss_dssp CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE--EEECCT----------TCTTCEEEEEECTTSCEEEEEEECSSSSC
T ss_pred CCccccccccccccCCCCEEEEEECCCCcccce--EEeccC----------CCCeEEEEEEEcCCCCEEEEEEEccCCCc
Confidence 665 99999987653211 111111 1224578899999999988742 3
Q ss_pred CeEEEEEccC------CCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC----CcEEEEecCCCc
Q 010256 362 MTLKLWDINM------DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGS 431 (514)
Q Consensus 362 ~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~ 431 (514)
..|++||+.. .......+..+.... ...|+|+|+.|+..+.+ +.|.+||+.++.
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKWVKLIDNFEGE----------------YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCEEEECSSSSC----------------EEEEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred cEEEEEECcccccccCCccceEEeeCCCCcE----------------EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 6899999974 222345554443321 23588999987766543 369999998764
Q ss_pred e-eeeeecCCCc--ceeEEEECCCCCceeecCCCCeEEE--eeC--CCCCccccCCcccccccceEEEEEcCCCCEEEEE
Q 010256 432 A-ESTTLEASKN--PMRRQVQTPSRPSRPLGSLSGVVRR--VKG--ADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 432 ~-~~~~~~~~~~--~v~~~~~~~~~~~l~s~s~d~~v~i--~~~--~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~ 504 (514)
. ....+..|.. .+..+.+++++.++++...|+..++ ++- .+.. ..+. .+...|..++++|+++.|+..
T Consensus 323 ~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~-~~l~----~~~~~v~~~~~s~d~~~l~~~ 397 (710)
T 2xdw_A 323 ESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL-KIFP----LEVGSVVGYSGQKKDTEIFYQ 397 (710)
T ss_dssp GGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE-EEEC----CCSSEEEEEECCTTCSEEEEE
T ss_pred cccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEE-EecC----CCCceEEEEecCCCCCEEEEE
Confidence 2 1234444543 6778888888889999999997776 321 1111 0111 135678899999999877744
Q ss_pred e-----cCcEEEEe
Q 010256 505 A-----SNSLYMYY 513 (514)
Q Consensus 505 ~-----~~~~~i~~ 513 (514)
. ...+++|.
T Consensus 398 ~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 398 FTSFLSPGIIYHCD 411 (710)
T ss_dssp EECSSCCCEEEEEE
T ss_pred EeCCCCCCEEEEEE
Confidence 3 23566654
No 190
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.57 E-value=1.5e-12 Score=120.38 Aligned_cols=209 Identities=11% Similarity=0.041 Sum_probs=132.6
Q ss_pred CeEEEEECCCCCEEEEe-cC---Ce--EEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC----
Q 010256 235 HINSISNNSDGETFISA-DD---LR--INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---- 304 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~d---~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---- 304 (514)
.+..++|+|||+.|+.. .+ +. |.+|++.+++ ...+ ..+.. +..++|+|++ +.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~-~~~l--------~~~~~-~~~~~wspdg-~~l~~~~~~~~~~ 128 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS-SKKI--------LEAKN-IRSLEWNEDS-RKLLIVGFKRRED 128 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE-EEEE--------EEESE-EEEEEECTTS-SEEEEEEECCCC-
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc-eEEE--------EcCCC-ccceeECCCC-CEEEEEEccCCCc
Confidence 45678999999988876 32 44 7777877443 2222 12233 8999999999 777776632
Q ss_pred -----------------------CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC
Q 010256 305 -----------------------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 361 (514)
Q Consensus 305 -----------------------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 361 (514)
..|.+||+.+++.. +. +.. . .+..++|+|+| +++++..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~----~~------------l~~-~-~~~~~~~spdg-~~~~~~~ 189 (347)
T 2gop_A 129 EDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI----EE------------FEK-P-RFSSGIWHRDK-IVVNVPH 189 (347)
T ss_dssp --------CCCC---------CEEEEEEEETTTTEEE----EE------------EEE-E-TTCEEEEETTE-EEEEEEC
T ss_pred CCcEEEcccceeecCcccccCccceEEEEECCCCeEE----ee------------ecC-C-CcccccCCCCe-EEEEEec
Confidence 56888998876531 11 111 1 57789999999 7776532
Q ss_pred -C-------eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC--------CcEEEE
Q 010256 362 -M-------TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS--------NLFRVF 425 (514)
Q Consensus 362 -~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d--------g~i~iw 425 (514)
. ...||.+.. ++ ...+..+ .. ...++|||++|+.++.+ ..|++|
T Consensus 190 ~~~~~~~~~~~~l~~~d~-~~-~~~l~~~-~~-----------------~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~ 249 (347)
T 2gop_A 190 REIIPQYFKFWDIYIWED-GK-EEKMFEK-VS-----------------FYAVDSDGERILLYGKPEKKYMSEHNKLYIY 249 (347)
T ss_dssp CCSSCCSSCCEEEEEEET-TE-EEEEEEE-ES-----------------EEEEEECSSCEEEEECCSSSCCCSSCEEEEE
T ss_pred ccccccccccccEEEeCC-Cc-eEEeccC-cc-----------------eeeECCCCCEEEEEEccccCCccccceEEEE
Confidence 1 445555542 43 3333322 11 22349999988877644 368888
Q ss_pred ecCCCceeeeeecCCCcceeE-EEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEE
Q 010256 426 GCSEGSAESTTLEASKNPMRR-QVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 426 d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~ 504 (514)
| ++ ........+...+.. +.|+ ++ ++++++.++.+++. -. .. .. .....+...|.+++|+| .+++++
T Consensus 250 d--~~-~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~--~g-~~-~~~~~~~~~v~~~~~s~--~~~~~~ 317 (347)
T 2gop_A 250 D--GK-EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW--DG-EI-KPIAKGRHWIMGFDVDE--IVVYLK 317 (347)
T ss_dssp C--SS-CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE--SS-SE-EEEECSSSEEEEEEESS--SEEEEE
T ss_pred C--CC-ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec--CC-ce-EEEecCCCeEEeeeeeC--cEEEEE
Confidence 8 44 333445566777886 8999 88 99999999988883 11 11 11 11223467889999999 555555
Q ss_pred e
Q 010256 505 A 505 (514)
Q Consensus 505 ~ 505 (514)
+
T Consensus 318 ~ 318 (347)
T 2gop_A 318 E 318 (347)
T ss_dssp E
T ss_pred c
Confidence 4
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.56 E-value=2.7e-12 Score=114.11 Aligned_cols=238 Identities=8% Similarity=0.024 Sum_probs=154.0
Q ss_pred ceEEEEEcCCCCeEE-EecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 37 IISAIEFDKSGDHLA-TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 37 ~V~~~~~s~~g~~l~-tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
...+++++++|++++ +...++.|.+|+..+.... .....+. ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-----------------------~~~~~~~------------~~p 69 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-----------------------VLPFNGL------------YQP 69 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E-----------------------ECCCCSC------------CSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc-----------------------eEeeCCc------------CCc
Confidence 788999999999777 5467889999986543321 0001111 346
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
.++++ .++|.++++.. ++.|.+||......... .
T Consensus 70 ~~i~~--~~~g~l~v~~~-~~~i~~~d~~~~~~~~~---~---------------------------------------- 103 (270)
T 1rwi_B 70 QGLAV--DGAGTVYVTDF-NNRVVTLAAGSNNQTVL---P---------------------------------------- 103 (270)
T ss_dssp CCEEE--CTTCCEEEEET-TTEEEEECTTCSCCEEC---C----------------------------------------
T ss_pred ceeEE--CCCCCEEEEcC-CCEEEEEeCCCceEeee---e----------------------------------------
Confidence 77888 55666555555 88899998765421100 0
Q ss_pred CcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccC
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~ 274 (514)
......+.+++++++++++++. .++.|.+|+..+......
T Consensus 104 ----------------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~----- 144 (270)
T 1rwi_B 104 ----------------------------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL----- 144 (270)
T ss_dssp ----------------------------------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC-----
T ss_pred ----------------------------------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee-----
Confidence 0111346789999999988877 788999997653322210
Q ss_pred CCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCC
Q 010256 275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 354 (514)
Q Consensus 275 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 354 (514)
.......+.+++++|++ +++++...++.|.+||......... . ..+...+.+++++++|.
T Consensus 145 ---~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~-----~-----------~~~~~~p~~i~~d~~g~ 204 (270)
T 1rwi_B 145 ---PFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVVL-----P-----------FTDITAPWGIAVDEAGT 204 (270)
T ss_dssp ---CCCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCEEEC-----C-----------CSSCCSEEEEEECTTCC
T ss_pred ---ccccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCceEee-----c-----------ccCCCCceEEEECCCCC
Confidence 11123457889999998 7777777788999999876543210 0 01114578899999997
Q ss_pred EEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 355 HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 355 ~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
++++.. ++.|.+||... ... ...... . ......++++++|+++++...+++|+++++...
T Consensus 205 l~v~~~~~~~v~~~~~~~-~~~-~~~~~~-~-------------~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 205 VYVTEHNTNQVVKLLAGS-TTS-TVLPFT-G-------------LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEEETTTSCEEEECTTC-SCC-EECCCC-S-------------CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EEEEECCCCcEEEEcCCC-Ccc-eeeccC-C-------------CCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 777664 48899999864 222 221110 0 011348999999998888889999999998754
No 192
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.54 E-value=9.6e-11 Score=105.72 Aligned_cols=270 Identities=9% Similarity=0.012 Sum_probs=176.7
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
...+.+++++++|+++++...++.|.+|+.. ++.. . ..+..+. ..
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~---------------------~-~~~~~~~------------~~ 63 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK---------------------E-FEVPTPD------------AK 63 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE---------------------E-EECSSTT------------CC
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE---------------------E-EECCCCC------------Cc
Confidence 4578999999999988887778999999976 3321 0 0111111 45
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
+..+++ .+++.++++...++.|..||.. ++.... ..
T Consensus 64 ~~~i~~--~~~g~l~v~~~~~~~v~~~d~~-g~~~~~-~~---------------------------------------- 99 (300)
T 2qc5_A 64 VMCLIV--SSLGDIWFTENGANKIGKLSKK-GGFTEY-PL---------------------------------------- 99 (300)
T ss_dssp EEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEE-EC----------------------------------------
T ss_pred ceeEEE--CCCCCEEEEecCCCeEEEECCC-CCeEEe-cC----------------------------------------
Confidence 788888 5677777666667888888876 442211 00
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeecc
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
......+.+++++++++++++. .++.|..+|.. ++.. ..
T Consensus 100 -----------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~--- 139 (300)
T 2qc5_A 100 -----------------------------------PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EY--- 139 (300)
T ss_dssp -----------------------------------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EE---
T ss_pred -----------------------------------CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-Ec---
Confidence 0011346789999999988887 68899999987 3322 21
Q ss_pred CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 274 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
.+......+..+++.+++ +++++...++.|..||. +++.. .+.. ..+...+..++++++|
T Consensus 140 ---~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~----------~~~~~~~~~i~~d~~g 199 (300)
T 2qc5_A 140 ---DLPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGKLE-----EYPL----------PTNAAAPVGITSGNDG 199 (300)
T ss_dssp ---ECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEEC----------SSTTCCEEEEEECTTS
T ss_pred ---cCCCCCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCcEE-----EeeC----------CCCCCCcceEEECCCC
Confidence 122234568999999998 77776666889999998 44421 1111 1112467899999999
Q ss_pred CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCce
Q 010256 354 RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (514)
Q Consensus 354 ~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 432 (514)
.+.++... +.|.+||.. ++... +..... ...+.+++++++|+++++...++.|..|+.. +..
T Consensus 200 ~l~v~~~~~~~i~~~~~~--g~~~~-~~~~~~-------------~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~ 262 (300)
T 2qc5_A 200 ALWFVEIMGNKIGRITTT--GEISE-YDIPTP-------------NARPHAITAGKNSEIWFTEWGANQIGRITND-NTI 262 (300)
T ss_dssp SEEEEETTTTEEEEECTT--CCEEE-EECSST-------------TCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred CEEEEccCCCEEEEEcCC--CcEEE-EECCCC-------------CCCceEEEECCCCCEEEeccCCCeEEEECCC-CcE
Confidence 87777654 789999873 43322 211110 0113489999999977776677899999984 433
Q ss_pred eeeeecCCCcceeEEEECCCCCceeecC
Q 010256 433 ESTTLEASKNPMRRQVQTPSRPSRPLGS 460 (514)
Q Consensus 433 ~~~~~~~~~~~v~~~~~~~~~~~l~s~s 460 (514)
....+......+.++++.+++++.++..
T Consensus 263 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 263 QEYQLQTENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp EEEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred EEEECCccCCccceeEeCCCCCEEEEcc
Confidence 3233343455678899999988776665
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.53 E-value=1.5e-11 Score=108.90 Aligned_cols=185 Identities=11% Similarity=0.090 Sum_probs=127.7
Q ss_pred CeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec-CCeEEEEEcC
Q 010256 235 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMR 313 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg~i~~wd~~ 313 (514)
.+.++.++|+|++++ +.++.|..||. +++...++- . .....+.++.+.|+| +++++.+. ++.+..+|.
T Consensus 38 ~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~------~-~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~- 106 (276)
T 3no2_A 38 ECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIA------A-PAGCEMQTARILPDG-NALVAWCGHPSTILEVNM- 106 (276)
T ss_dssp CCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEE------C-CTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-
T ss_pred CCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEc------C-CCCccccccEECCCC-CEEEEecCCCCEEEEEeC-
Confidence 456788999999888 54677999998 566554331 1 123467889999999 88888777 778888886
Q ss_pred CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccc
Q 010256 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL 392 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 392 (514)
+++.+. .+..... ...+......+++.++|.++++... +.|.+||.+ ++.+..+......
T Consensus 107 ~Gk~l~----~~~~~~~------~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~~w~~~~~~~~------- 167 (276)
T 3no2_A 107 KGEVLS----KTEFETG------IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQLLNSVKLSGTP------- 167 (276)
T ss_dssp TSCEEE----EEEECCS------CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECSSCC-------
T ss_pred CCCEEE----EEeccCC------CCcccccccCceECCCCCEEEEecCCCEEEEECCC--CCEEEEEECCCCc-------
Confidence 555432 2221110 0111134556778999999998765 999999986 7887777654221
Q ss_pred cccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC------CcceeEEEECCCCCceeec
Q 010256 393 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS------KNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 393 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~ 459 (514)
.++.+.++|+++++++.+++|..+|..+++.. ..+..+ ...+..+...+++.++++.
T Consensus 168 ---------~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~-w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 168 ---------FSSAFLDNGDCLVACGDAHCFVQLNLESNRIV-RRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp ---------CEEEECTTSCEEEECBTTSEEEEECTTTCCEE-EEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred ---------cceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE-EEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 16778899999999888889999999988543 444322 2236677788888877765
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.52 E-value=1.3e-11 Score=109.69 Aligned_cols=233 Identities=6% Similarity=-0.048 Sum_probs=149.9
Q ss_pred CeEEEEECCCCCEEE-Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 235 HINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
...++++++++++++ +. .++.|.+|+..+..... . .......+.++++++++ +++++.. ++.|.+||.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~-------~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~ 94 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-L-------PFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAA 94 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-C-------CCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-E-------eeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeC
Confidence 678999999999887 54 78999999976433211 0 11223457889999998 6666555 889999998
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
...... .+... ....+..++++++|+++++... +.|.+|+... ....... ....
T Consensus 95 ~~~~~~-----~~~~~-----------~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~~~--~~~~------ 149 (270)
T 1rwi_B 95 GSNNQT-----VLPFD-----------GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS-KTQTVLP--FTGL------ 149 (270)
T ss_dssp TCSCCE-----ECCCC-----------SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC-CSCEECC--CCSC------
T ss_pred CCceEe-----eeecC-----------CcCCCcceEECCCCCEEEEECCCCEEEEEECCC-ceeEeec--cccC------
Confidence 764321 11110 1135789999999997777544 8899997543 2221111 1100
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCC
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 471 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~ 471 (514)
.....++++++|+++++...++.|.+|+....... .....+...+..+++.+++.++++...++.|.+++..
T Consensus 150 -------~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 150 -------NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp -------CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred -------CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE-eecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence 01227999999998887777889999998765332 2222333667899999999888888778888874322
Q ss_pred CCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 472 DNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 472 ~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
...... ........+..++++|+|+++++.. ++.+.+|.
T Consensus 222 ~~~~~~---~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 222 STTSTV---LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp CSCCEE---CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred CCccee---eccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 111001 1112235789999999998766665 56666664
No 195
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.49 E-value=6e-11 Score=108.39 Aligned_cols=233 Identities=9% Similarity=-0.015 Sum_probs=148.0
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
.....+++. +++.+++. .++.|.+||..+.+....+ . .......+++++++ .++++...++.|.+||+
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i--------~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~ 112 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI--------T-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINP 112 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE--------E-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEET
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc--------C-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEEC
Confidence 345677774 34455555 7899999999977654432 1 23567899999998 66666558999999999
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--CCeEEEEEccCCCCceeeeeeccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
.+++.. ..+..... .+.......+++ .+++++++.. ++.|.++|..+ ++.+..+......
T Consensus 113 ~t~~~~----~~i~~g~~-------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t-~~~~~~i~~g~~p----- 174 (328)
T 3dsm_A 113 KTYEIT----GYIECPDM-------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTET-DKVVDELTIGIQP----- 174 (328)
T ss_dssp TTTEEE----EEEECTTC-------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTT-TEEEEEEECSSCB-----
T ss_pred CCCeEE----EEEEcCCc-------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCC-CeEEEEEEcCCCc-----
Confidence 987753 22222110 000113455666 4555555542 58999999987 6666666543222
Q ss_pred cccccCCccceeeEEEcCCCCEEEEEeCC----------CcEEEEecCCCceeeeeecCC-CcceeEEEECCCCCceeec
Q 010256 391 DLYENDSIFDKFECCLSGDGGRVATGSYS----------NLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~ 459 (514)
..++++|+|++++++..+ +.|.++|..+++. ...+... ......++++|+++.|.++
T Consensus 175 -----------~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v-~~~~~~~~g~~p~~la~~~d~~~lyv~ 242 (328)
T 3dsm_A 175 -----------TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV-EKQFKFKLGDWPSEVQLNGTRDTLYWI 242 (328)
T ss_dssp -----------CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE-EEEEECCTTCCCEEEEECTTSCEEEEE
T ss_pred -----------cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE-EEEEecCCCCCceeEEEecCCCEEEEE
Confidence 178899999988776654 7899999988743 3344322 2367899999999988776
Q ss_pred CCCCeEEEeeCC--CCCccccCCccccc-ccceEEEEEcCCCCEEEEEe------cCcEEEEe
Q 010256 460 SLSGVVRRVKGA--DNSALDANGNAFDF-SMKLLHLAWHPSENSIACAA------SNSLYMYY 513 (514)
Q Consensus 460 s~d~~v~i~~~~--~~~~~~~~~~~~~~-~~~v~~~~~spd~~~l~~~~------~~~~~i~~ 513 (514)
.. .|.+++.. ++.. ...... ......++++|++..|.++. .+.+.+|.
T Consensus 243 ~~--~v~~~d~~t~~~~~----~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 243 NN--DIWRMPVEADRVPV----RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp SS--SEEEEETTCSSCCS----SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred cc--EEEEEECCCCceee----eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 54 66664322 2211 011111 45788999999554444443 56677775
No 196
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.48 E-value=3.4e-11 Score=109.51 Aligned_cols=158 Identities=8% Similarity=0.116 Sum_probs=101.4
Q ss_pred CeEEEEECCCCCEEEEe-cC---------------CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEe----cCC
Q 010256 235 HINSISNNSDGETFISA-DD---------------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH----PTH 294 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~d---------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~----p~~ 294 (514)
.+.+++++++|+++++. .+ +.|..|+.. ++ ...+ ..+......++++ |++
T Consensus 118 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~--------~~~~~~~~~i~~~~~~d~dg 187 (314)
T 1pjx_A 118 GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQV--------DTAFQFPNGIAVRHMNDGRP 187 (314)
T ss_dssp CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEEE--------EEEESSEEEEEEEECTTSCE
T ss_pred CCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC-EEEe--------ccCCCCcceEEEecccCCCC
Confidence 46788899998887776 44 567777764 22 2211 1123456889999 998
Q ss_pred CcEE-EEEecCCeEEEEEcC-CCccccccccceeccCCCCccceeeccc-cceeEEEEecCCCEEEEEe-CCeEEEEEcc
Q 010256 295 CNML-AYSSSKGSIRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARNGRHILSRD-YMTLKLWDIN 370 (514)
Q Consensus 295 ~~~l-~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~ 370 (514)
+.+ ++...++.|.+||+. ++.... ...+.. +.++. ..+..++++++|+++++.. ++.|.+||..
T Consensus 188 -~~l~v~~~~~~~i~~~~~~~~g~~~~--~~~~~~---------~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 188 -YQLIVAETPTKKLWSYDIKGPAKIEN--KKVWGH---------IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp -EEEEEEETTTTEEEEEEEEETTEEEE--EEEEEE---------CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred -CEEEEEECCCCeEEEEECCCCCcccc--ceEEEE---------CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence 554 444568999999986 333210 001110 11122 3467899999999888764 4899999987
Q ss_pred CCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEE-EEeCCCcEEEEecCCC
Q 010256 371 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEG 430 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~ 430 (514)
+ ++.+..+..+... +.+++|+++|+.|+ +...++.|..|++...
T Consensus 256 ~-g~~~~~~~~~~~~---------------~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 256 G-GQPKMRIRCPFEK---------------PSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp C-BSCSEEEECSSSC---------------EEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred C-CcEeEEEeCCCCC---------------ceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 5 5555555443221 33899999999554 5556789999998753
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.48 E-value=4.8e-11 Score=105.71 Aligned_cols=225 Identities=10% Similarity=0.072 Sum_probs=148.5
Q ss_pred CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCC
Q 010256 46 SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSAN 125 (514)
Q Consensus 46 ~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~ 125 (514)
.+++|++++.++.|.+||.++++. +-.+..+.. ..+.++.+ .++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~-----------------------~w~~~~~~~-----------~~~~~~~~--~pd 47 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEI-----------------------VWEYPLEKG-----------WECNSVAA--TKA 47 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEE-----------------------EEEEECCTT-----------CCCCEEEE--CTT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeE-----------------------EEEeCCCcc-----------CCCcCeEE--CCC
Confidence 457999999999999999877774 233333320 24778888 567
Q ss_pred CcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCC
Q 010256 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (514)
Q Consensus 126 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (514)
|++++ +.++.|..||. +++.......
T Consensus 48 G~ilv--s~~~~V~~~d~-~G~~~W~~~~--------------------------------------------------- 73 (276)
T 3no2_A 48 GEILF--SYSKGAKMITR-DGRELWNIAA--------------------------------------------------- 73 (276)
T ss_dssp SCEEE--ECBSEEEEECT-TSCEEEEEEC---------------------------------------------------
T ss_pred CCEEE--eCCCCEEEECC-CCCEEEEEcC---------------------------------------------------
Confidence 77777 45678888887 5553332211
Q ss_pred cEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-c-CCeEEEEeccCCCceeeeeccCCCcccccCC
Q 010256 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDVKPANMEDLTE 283 (514)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 283 (514)
.....+.++.+.++|+++++. . ++.|..+|.. ++...++ .... ....+..
T Consensus 74 -------------------------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~-~~~~-~~~~~~~ 125 (276)
T 3no2_A 74 -------------------------PAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKT-EFET-GIERPHA 125 (276)
T ss_dssp -------------------------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEE-EECC-SCSSGGG
T ss_pred -------------------------CCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEE-eccC-CCCcccc
Confidence 011235677888999998887 5 7777777763 4433322 1111 1111222
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-C
Q 010256 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M 362 (514)
Q Consensus 284 ~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~ 362 (514)
....+.+.++| +++++...++.|..||.. ++..+ .+... ..+.++.+.++|.+++++.+ +
T Consensus 126 ~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~-G~~~w----~~~~~-------------~~~~~~~~~~~g~~~v~~~~~~ 186 (276)
T 3no2_A 126 QFRQINKNKKG-NYLVPLFATSEVREIAPN-GQLLN----SVKLS-------------GTPFSSAFLDNGDCLVACGDAH 186 (276)
T ss_dssp SCSCCEECTTS-CEEEEETTTTEEEEECTT-SCEEE----EEECS-------------SCCCEEEECTTSCEEEECBTTS
T ss_pred cccCceECCCC-CEEEEecCCCEEEEECCC-CCEEE----EEECC-------------CCccceeEcCCCCEEEEeCCCC
Confidence 34566788998 899999999999999987 77643 23221 23556788899999998766 7
Q ss_pred eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe
Q 010256 363 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (514)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (514)
+|..+|..+ ++.+..+....... .....+..++..++|+++++..
T Consensus 187 ~v~~~d~~t-G~~~w~~~~~~~~~---------~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 187 CFVQLNLES-NRIVRRVNANDIEG---------VQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEECTTT-CCEEEEEEGGGSBS---------CCCSEEEEEEECTTSCEEEEEE
T ss_pred eEEEEeCcC-CcEEEEecCCCCCC---------ccccccccceEcCCCCEEEEec
Confidence 899999987 88887776432110 0112244788889999888764
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.47 E-value=5.3e-10 Score=100.81 Aligned_cols=234 Identities=4% Similarity=-0.049 Sum_probs=152.6
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
..+.+++++++++++++. .++.|..||.. ++. ... ........+.++++.+++ +++++...++.|..+|.
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~------~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~ 132 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TEY------PLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTA 132 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEE------ECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECT
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EEe------cCCCCCCCCccceECCCC-CEEEEccCCCeEEEECC
Confidence 457789999999988877 68899999987 432 211 122234668999999998 77777766889999998
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
. ++.. .+... .....+.++++.++|++.++... +.|..+|.. ++... +.....
T Consensus 133 ~-g~~~-----~~~~~----------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~--g~~~~-~~~~~~------- 186 (300)
T 2qc5_A 133 D-GTIY-----EYDLP----------NKGSYPAFITLGSDNALWFTENQNNSIGRITNT--GKLEE-YPLPTN------- 186 (300)
T ss_dssp T-SCEE-----EEECS----------STTCCEEEEEECTTSSEEEEETTTTEEEEECTT--CCEEE-EECSST-------
T ss_pred C-CCEE-----EccCC----------CCCCCceeEEECCCCCEEEEecCCCeEEEECCC--CcEEE-eeCCCC-------
Confidence 6 4432 11111 11246789999999997766654 789999873 44332 221111
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCC
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 471 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~ 471 (514)
......++++++|+++++....+.|.+|+. ++......+..+...+..+++.+++++.++...++.|..++..
T Consensus 187 ------~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 187 ------AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp ------TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred ------CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 011337899999988877777788999998 4433333344455668899999999987777667777764321
Q ss_pred CCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 472 DNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 472 ~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
.... .. ........+.++++.++|++.++.. +++..|.
T Consensus 260 g~~~-~~--~~~~~~~~~~~i~~~~~g~l~v~~~-~~i~~~~ 297 (300)
T 2qc5_A 260 NTIQ-EY--QLQTENAEPHGITFGKDGSVWFALK-CKIGKLN 297 (300)
T ss_dssp SCEE-EE--ECCSTTCCCCCEEECTTSCEEEECS-SEEEEEE
T ss_pred CcEE-EE--ECCccCCccceeEeCCCCCEEEEcc-CceEEeC
Confidence 1100 01 0111245688999999999666555 3666654
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.47 E-value=4.5e-12 Score=129.48 Aligned_cols=236 Identities=11% Similarity=0.076 Sum_probs=145.8
Q ss_pred CccCeEEEEECCCCCEEEEe-c-C----CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC
Q 010256 232 HDYHINSISNNSDGETFISA-D-D----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 305 (514)
Q Consensus 232 h~~~v~~~~~~~~~~~l~s~-~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg 305 (514)
|...+..++|+|||++|+.+ + + ..|++||+.+++..... . +...+..++|+|| . .|+.++.++
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-------~--~~~~~~~~~wspD-~-~l~~~~~~~ 229 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-------L--KWVKFSGLAWLGN-D-ALLYSRFAE 229 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-------E--EEEESCCCEESTT-S-EEEEEECCC
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-------C--CCceeccEEEECC-C-EEEEEEecC
Confidence 33467789999999999986 3 2 46999999976543210 1 1112357889999 4 455555543
Q ss_pred --------------eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-C-----CeEE
Q 010256 306 --------------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-----MTLK 365 (514)
Q Consensus 306 --------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-----~~i~ 365 (514)
.|++|++.++..... ..+... .+...+..+.|||||++|+... + ..|+
T Consensus 230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--lv~~~~----------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 230 PKEGQAFQALNYNQTVWLHRLGTPQSADQ--PVFATP----------ELPKRGHGASVSSDGRWVVITSSEGTDPVNTVH 297 (741)
T ss_dssp C--------CCCCCEEEEEETTSCGGGCE--EEECCT----------TCTTCEEEEEECTTSCEEEEEEECTTCSCCEEE
T ss_pred cccccccccCCCCCEEEEEECCCCchhCE--EEeccC----------CCCeEEEEEEECCCCCEEEEEEEccCCCcceEE
Confidence 388899876653111 112211 1123578899999999888743 2 4899
Q ss_pred EEEccCCC--CceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC----CcEEEEecCCCc-eeeeeec
Q 010256 366 LWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGS-AESTTLE 438 (514)
Q Consensus 366 iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~-~~~~~~~ 438 (514)
+||+.. + +....+..+.... ... ++|+|+.|+..+.+ +.|++||+.++. .....+.
T Consensus 298 ~~d~~~-~~~~~~~~l~~~~~~~---------------~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~ 360 (741)
T 1yr2_A 298 VARVTN-GKIGPVTALIPDLKAQ---------------WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP 360 (741)
T ss_dssp EEEEET-TEECCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC
T ss_pred EEECCC-CCCcccEEecCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec
Confidence 999986 3 2144444333211 133 45899988877653 459999998742 3334455
Q ss_pred CCCcceeEEEECCCCCceeecCCCCeEEE--ee--CCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-----cCcE
Q 010256 439 ASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-----SNSL 509 (514)
Q Consensus 439 ~~~~~v~~~~~~~~~~~l~s~s~d~~v~i--~~--~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-----~~~~ 509 (514)
.+...+..+.+. ++.++++...|+..++ ++ +.... .+. ......|..++++||++.|+... ...+
T Consensus 361 ~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~--~l~---~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i 434 (741)
T 1yr2_A 361 ESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG--AVS---LPGIGSASGLSGRPGDRHAYLSFSSFTQPATV 434 (741)
T ss_dssp CCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE--ECB---CSSSCEEEEEECCBTCSCEEEEEEETTEEEEE
T ss_pred CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee--ecc---CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence 555566677777 6678888889998887 22 22111 111 12356788999999998777432 2456
Q ss_pred EEEe
Q 010256 510 YMYY 513 (514)
Q Consensus 510 ~i~~ 513 (514)
++|.
T Consensus 435 ~~~d 438 (741)
T 1yr2_A 435 LALD 438 (741)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 200
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.47 E-value=3.3e-11 Score=110.08 Aligned_cols=249 Identities=8% Similarity=0.032 Sum_probs=153.9
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
+....+++. +++++++...++.|.+||..+++.. .++.. . ...
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~-----------------------~~i~~-~------------~~p 86 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEV-----------------------GRITG-F------------TSP 86 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEE-----------------------EEEEC-C------------SSE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEE-----------------------EEcCC-C------------CCC
Confidence 456778885 3455556666889999999877642 23321 1 447
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
..++++ +++..+++...++.|.+||..+++..........
T Consensus 87 ~~i~~~--~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~-------------------------------------- 126 (328)
T 3dsm_A 87 RYIHFL--SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM-------------------------------------- 126 (328)
T ss_dssp EEEEEE--ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC--------------------------------------
T ss_pred cEEEEe--CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc--------------------------------------
Confidence 888885 4554444444899999999999876544332200
Q ss_pred CcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-c-CCeEEEEeccCCCceeeeecc
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~ 273 (514)
.++......+++ .+++.+++. . ++.|.++|+++.+....+
T Consensus 127 ----------------------------------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i--- 168 (328)
T 3dsm_A 127 ----------------------------------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDEL--- 168 (328)
T ss_dssp ----------------------------------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEE---
T ss_pred ----------------------------------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEE---
Confidence 000012234555 344445554 3 899999999866543322
Q ss_pred CCCcccccCCceEEEEEecCCCcEEEEEecC----------CeEEEEEcCCCccccccccceeccCCCCccceeeccccc
Q 010256 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSK----------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (514)
Q Consensus 274 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d----------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (514)
. .......+.++|+| ++++++..+ +.|.++|..+++.. ..+.... ...
T Consensus 169 -----~-~g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~----~~~~~~~-----------g~~ 226 (328)
T 3dsm_A 169 -----T-IGIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE----KQFKFKL-----------GDW 226 (328)
T ss_dssp -----E-CSSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE----EEEECCT-----------TCC
T ss_pred -----E-cCCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeEE----EEEecCC-----------CCC
Confidence 1 12334678899998 666665554 78999999887652 2222110 125
Q ss_pred eeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC-CCCEEEEE----eC
Q 010256 344 ISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATG----SY 418 (514)
Q Consensus 344 i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~----~~ 418 (514)
...++|+|+++.|+++.. .|.+||..+ ++.......... ......++++| +++++++. ..
T Consensus 227 p~~la~~~d~~~lyv~~~-~v~~~d~~t-~~~~~~~~~~~~-------------~~~p~gi~vdp~~g~lyva~~~~y~~ 291 (328)
T 3dsm_A 227 PSEVQLNGTRDTLYWINN-DIWRMPVEA-DRVPVRPFLEFR-------------DTKYYGLTVNPNNGEVYVADAIDYQQ 291 (328)
T ss_dssp CEEEEECTTSCEEEEESS-SEEEEETTC-SSCCSSCSBCCC-------------SSCEEEEEECTTTCCEEEEECTTSSS
T ss_pred ceeEEEecCCCEEEEEcc-EEEEEECCC-CceeeeeeecCC-------------CCceEEEEEcCCCCeEEEEccccccc
Confidence 788999999999988765 899999976 443211100000 00123799999 56666666 57
Q ss_pred CCcEEEEecCCCceeeeeec
Q 010256 419 SNLFRVFGCSEGSAESTTLE 438 (514)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~ 438 (514)
++.|.+||.. ++ ...++.
T Consensus 292 ~~~V~v~d~~-g~-~~~~i~ 309 (328)
T 3dsm_A 292 QGIVYRYSPQ-GK-LIDEFY 309 (328)
T ss_dssp EEEEEEECTT-CC-EEEEEE
T ss_pred CCEEEEECCC-CC-EEEEEE
Confidence 8899999998 53 334443
No 201
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.47 E-value=3.7e-11 Score=109.56 Aligned_cols=283 Identities=9% Similarity=0.023 Sum_probs=170.2
Q ss_pred eeCCCCcEEEEeeC-----CCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 121 CQSANSALYLLSTN-----DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 121 ~~~~~~~~l~s~~~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
.|.+++..++++.. ++.|.+.|..+++..........+ .++++|||+.+
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-----------------~va~spDG~~l--------- 92 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-----------------NPVVADDGSFI--------- 92 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-----------------EEEECTTSSCE---------
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-----------------cEEECCCCCEE---------
Confidence 44677878887754 689999999999887766554222 47899999987
Q ss_pred CcccCCC----------CCCcEEeceeecccccccccccccccccc------CccCeEEEEECCCCCEEEEe-c--CCeE
Q 010256 196 DSSFPPG----------GVSSLRLPVVVTSQETNLVAGCRRIYAHA------HDYHINSISNNSDGETFISA-D--DLRI 256 (514)
Q Consensus 196 ~~~~~~~----------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~l~s~-~--d~~i 256 (514)
++++ .++.|.+|| ....+.. ..+..+ .......++|+|||+++..+ . ++.|
T Consensus 93 ---yVan~~~~r~~~G~~~~~VsviD-~~t~~v~------~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 93 ---AHASTVFSRIARGERTDYVEVFD-PVTLLPT------ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp ---EEEEEEEEETTEEEEEEEEEEEC-TTTCCEE------EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred ---EEEcccccccccCCCCCEEEEEE-CCCCeEE------EEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 5443 357899988 3332211 111000 01235578999999998876 3 6899
Q ss_pred EEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCC-CccccccccceeccCCCCccc
Q 010256 257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRS 335 (514)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~ 335 (514)
.++|+.+.+....+ . .. + +....|.+.+.+++.+.||.+.+.++.. ++........+...
T Consensus 163 sVID~~t~~vv~tI-~-----v~---g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~------- 223 (386)
T 3sjl_D 163 GVVDLEGKAFKRML-D-----VP---D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE------- 223 (386)
T ss_dssp EEEETTTTEEEEEE-E-----CC---S---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT-------
T ss_pred EEEECCCCcEEEEE-E-----CC---C---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccc-------
Confidence 99999976544332 1 11 1 1122354446778888999999999876 44321100111110
Q ss_pred eeeccccce-eEEEEe-cCCCEEEEEeCCeEEEEEccCCCC--ceeeeeeccccccccccccccCCccceeeEEEcCCCC
Q 010256 336 FFTEIIASI-SDIKFA-RNGRHILSRDYMTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (514)
Q Consensus 336 ~~~~~~~~i-~~~~~s-~~g~~l~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 411 (514)
..++ ....|. ++|++++...+++|.+.|+.. .. .+..+..-.. ..+..-...+. ...++++++++
T Consensus 224 -----~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~-~~~~v~~~~~~~~~--~~~~~g~~p~g---~q~~a~~~~~~ 292 (386)
T 3sjl_D 224 -----DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSS-GDAKFLPAVEALTE--AERADGWRPGG---WQQVAYHRALD 292 (386)
T ss_dssp -----TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTT-SSCEECCCEESSCH--HHHHTTEEECS---SSCEEEETTTT
T ss_pred -----cccccccceeEcCCCcEEEEeCCCEEEEEECCC-Ccceeecceecccc--ccccccccCCC---cceeeECCCCC
Confidence 0112 123564 688777766669999999975 22 2222220000 00000000000 11578899999
Q ss_pred EEEEEeC----------CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCC-ceee-cCCCCeEEEeeCC
Q 010256 412 RVATGSY----------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPL-GSLSGVVRRVKGA 471 (514)
Q Consensus 412 ~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s-~s~d~~v~i~~~~ 471 (514)
.|+.... .+.|.+.|+++++......-+ .+++.+.+++|++ +|.+ ...++.|.+++..
T Consensus 293 ~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 293 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred eEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 8877643 257999999988554333223 2678999999997 5544 5668999985544
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.44 E-value=9.1e-12 Score=127.25 Aligned_cols=159 Identities=9% Similarity=0.023 Sum_probs=94.2
Q ss_pred cCeEEEEECCCCCEEEEe-cC-----CeEEEEeccCCCce-eeeeccCCCcccccCCceEEEEEecCCCcEEEEEec---
Q 010256 234 YHINSISNNSDGETFISA-DD-----LRINLWNLEISNQS-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--- 303 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d-----~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~--- 303 (514)
..+..+.|+|||++|+.. .+ ..|++||+.++... .. .+..+...+... ++|++ ..|+..+.
T Consensus 268 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~-------~l~~~~~~~~~~-~~~dg-~~l~~~s~~~~ 338 (741)
T 1yr2_A 268 KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT-------ALIPDLKAQWDF-VDGVG-DQLWFVSGDGA 338 (741)
T ss_dssp TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE-------EEECSSSSCEEE-EEEET-TEEEEEECTTC
T ss_pred eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE-------EecCCCCceEEE-EeccC-CEEEEEECCCC
Confidence 357889999999988876 43 38999999855211 11 122233334444 34888 66666665
Q ss_pred -CCeEEEEEcCCCc-cccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeeee
Q 010256 304 -KGSIRLIDMRQSA-LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQ 380 (514)
Q Consensus 304 -dg~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~ 380 (514)
++.|.+||+.++. . ...+ +..+...+..+.++ ++.++++. .++..+||.+...++....+.
T Consensus 339 ~~~~l~~~d~~~~~~~----~~~l-----------~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~ 402 (741)
T 1yr2_A 339 PLKKIVRVDLSGSTPR----FDTV-----------VPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVS 402 (741)
T ss_dssp TTCEEEEEECSSSSCE----EEEE-----------ECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECB
T ss_pred CCCEEEEEeCCCCccc----cEEE-----------ecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeecc
Confidence 3459999987642 1 1111 11222346677777 45555655 457777766553255454444
Q ss_pred eccccccccccccccCCccceeeEEEcCCCCEEE-EE---eCCCcEEEEecCCCc
Q 010256 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TG---SYSNLFRVFGCSEGS 431 (514)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~---~~dg~i~iwd~~~~~ 431 (514)
.+... .+..++++|+++.|+ +. ...+.|++||+.+++
T Consensus 403 ~~~~~--------------~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 403 LPGIG--------------SASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp CSSSC--------------EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCCCe--------------EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 32110 133788999988665 22 234789999998764
No 203
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.42 E-value=1.6e-09 Score=100.33 Aligned_cols=294 Identities=7% Similarity=-0.025 Sum_probs=169.1
Q ss_pred EEcCCCCeEEEecC--CC---eEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccccee
Q 010256 42 EFDKSGDHLATGDR--GG---RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (514)
Q Consensus 42 ~~s~~g~~l~tg~~--dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (514)
...|+++++++... .+ .|.+||..+++.. ..+.... .+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~-----------------------~~i~~g~------------~p-- 69 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL-----------------------GHVNGGF------------LP-- 69 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEE-----------------------EEecCCC------------CC--
Confidence 44578887777653 22 7899998876632 2222211 22
Q ss_pred EEEEeeCCCCcEEEEee----------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 117 ~i~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
.+++ +++|++++++. .++.|.+||..+.+.............. ....+..+.++|||+.+
T Consensus 70 ~i~~--spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~--------~g~~p~~~~~spDG~~l 139 (373)
T 2mad_H 70 NPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD--------VGPYSWMNANTPNNADL 139 (373)
T ss_pred CeEE--CCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc--------cCCCccceEECCCCCEE
Confidence 7788 67888888875 3688999999987766554432000000 00122378999999998
Q ss_pred ccccCCCCCCcccCCCC--CCcEEeceeecccccccccccccc-ccccCccCeEEEEECCCCC-EEEEe-cCCeEEEEec
Q 010256 187 ERNFGCASNDSSFPPGG--VSSLRLPVVVTSQETNLVAGCRRI-YAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNL 261 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~--~~~i~i~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~ 261 (514)
+.++. ++.|.++| ... +. ... + . . . .++.+.|++. .+++. .||.+.++|.
T Consensus 140 ------------~v~n~~~~~~v~viD-~t~-~~------~~~~i-~-~-~--~~~~~~~~~~~~~~~~~~dg~~~~vd~ 194 (373)
T 2mad_H 140 ------------LFFQFAAGPAVGLVV-QGG-SS------DDQLL-S-S-P--TCYHIHPGAPSTFYLLCAQGGLAKTDH 194 (373)
T ss_pred ------------EEEecCCCCeEEEEE-CCC-CE------EeEEc-C-C-C--ceEEEEeCCCceEEEEcCCCCEEEEEC
Confidence 55443 46677655 221 11 111 1 0 0 0 1244556553 33444 8999999999
Q ss_pred cCCCceeeeeccCCCcccccCCc-eEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecc
Q 010256 262 EISNQSFNIVDVKPANMEDLTEV-ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (514)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~-i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (514)
+++..... ...+ .+. ...+ .....+.+++ ..++..+..+.+.+.|+....... ...++....... .....
T Consensus 195 -~g~~~~~~-~~~~-~~~-~~~p~~~~~~~~~~~-~~~~~~~~~~~v~vid~~~~~~~v--~~~~~~~~~~~~--~~~~~ 265 (373)
T 2mad_H 195 -AGGAAGAG-LVGA-MLT-AAQNLLTQPAQANKS-GRIVWPVYSGKILQADISAAGATN--KAPIDALSGGRK--ADTWR 265 (373)
T ss_pred -CCcEEEEE-eccc-ccc-CCcceeecceeEecC-CEEEEEcCCceEEEEeccCCcceE--eeeeeecCCccc--cccee
Confidence 56544221 1000 011 1122 2335667776 344444478899999987643210 112221100000 00001
Q ss_pred ccceeEEEEecCCCEEEEEe-----------CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 341 IASISDIKFARNGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 341 ~~~i~~~~~s~~g~~l~~~~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
......+.++|+++.++... .+.|.++|..+ .+.+.++...... ..++|+||
T Consensus 266 p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~g~~p----------------~~i~~s~D 328 (373)
T 2mad_H 266 PGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHDV----------------DAISVAQD 328 (373)
T ss_pred cCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEECCCCc----------------CeEEECCC
Confidence 12345578999998877642 15799999997 7777777644322 28999999
Q ss_pred CC-EEEEEe-CCCcEEEEecCCCcee
Q 010256 410 GG-RVATGS-YSNLFRVFGCSEGSAE 433 (514)
Q Consensus 410 ~~-~l~s~~-~dg~i~iwd~~~~~~~ 433 (514)
|+ +++++. .++.|.+||+.+++..
T Consensus 329 g~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 329 GGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred CCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 99 777776 5899999999987544
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.42 E-value=2.6e-10 Score=104.05 Aligned_cols=314 Identities=8% Similarity=0.001 Sum_probs=177.8
Q ss_pred EEEcCCCCeEEEecC-----CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 41 IEFDKSGDHLATGDR-----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 41 ~~~s~~g~~l~tg~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
....|+++.+++... ++.|.+.|..+.+.. .++..-. .+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~-----------------------~~I~vG~------------~P- 81 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI-----------------------GMIDGGF------------LP- 81 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE-----------------------EEEEECS------------SC-
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE-----------------------EEEECCC------------CC-
Confidence 455789998888765 679999998877642 3333221 22
Q ss_pred eEEEEeeCCCCcEEEEee----------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 116 NKIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
. +.+ +++|++++++. .++.|.+||..+++............ ......+..+.++|||+.
T Consensus 82 ~-va~--spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r--------~~~g~~P~~~a~spDGk~ 150 (386)
T 3sjl_D 82 N-PVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR--------FLVGTYPWMTSLTPDGKT 150 (386)
T ss_dssp E-EEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC--------CCBSCCGGGEEECTTSSE
T ss_pred c-EEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccc--------cccCCCCceEEEcCCCCE
Confidence 3 888 67888887765 36789999999998776665431000 000112337899999998
Q ss_pred cccccCCCCCCcccCCC--CCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEecc
Q 010256 186 GERNFGCASNDSSFPPG--GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLE 262 (514)
Q Consensus 186 l~~~~~~~~~~~~~~~~--~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~ 262 (514)
+ ++.. .++.|.++| ....+. ...+.. ... ...+....+.+++. .||++.+.++.
T Consensus 151 l------------yVan~~~~~~VsVID-~~t~~v------v~tI~v---~g~-~~~~P~g~~~~~~~~~DG~~~~v~~~ 207 (386)
T 3sjl_D 151 L------------LFYQFSPAPAVGVVD-LEGKAF------KRMLDV---PDC-YHIFPTAPDTFFMHCRDGSLAKVAFG 207 (386)
T ss_dssp E------------EEEECSSSCEEEEEE-TTTTEE------EEEEEC---CSE-EEEEEEETTEEEEEETTSCEEEEECC
T ss_pred E------------EEEEcCCCCeEEEEE-CCCCcE------EEEEEC---CCc-ceeecCCCceeEEECCCCCEEEEECC
Confidence 7 5544 367899888 332221 111100 001 11122223344443 67777777776
Q ss_pred CCCceeeeeccCCCcccccCCceE-EEEEe-cCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecc
Q 010256 263 ISNQSFNIVDVKPANMEDLTEVIT-SAEFH-PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (514)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~i~-~v~~~-p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (514)
+........ ...+......+. ...|. ++| ++++ .+.+|.+.+.|+.+..... ...+...... .......
T Consensus 208 ~~g~v~~~~---~~~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v--~~~~~~~~~~--~~~~g~~ 278 (386)
T 3sjl_D 208 TEGTPEITH---TEVFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKF--LPAVEALTEA--ERADGWR 278 (386)
T ss_dssp SSSCCEEEE---CCCCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEE--CCCEESSCHH--HHHTTEE
T ss_pred CCCeEEEee---cceeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCccee--ecceeccccc--ccccccc
Confidence 422221110 001111112221 23665 566 4444 6668999999997654210 1111100000 0000001
Q ss_pred ccceeEEEEecCCCEEEEEe----------C-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 341 IASISDIKFARNGRHILSRD----------Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 341 ~~~i~~~~~s~~g~~l~~~~----------~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
......++++++++.++... . ..|.+.|+.+ .+.+.++...... +.+++++|
T Consensus 279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~vg~~~----------------~~lavs~D 341 (386)
T 3sjl_D 279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGHEI----------------DSINVSQD 341 (386)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECSS
T ss_pred CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEECCCCc----------------ceEEECCC
Confidence 13445678899988887742 1 5799999998 8888887655432 28999999
Q ss_pred CC-EEEEE-eCCCcEEEEecCCCceeeeeecCCCcceeEEEECCC
Q 010256 410 GG-RVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 452 (514)
Q Consensus 410 ~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (514)
++ +|++. ..++.|.++|..+++.. .++..- .....+.+++|
T Consensus 342 ~~~~ly~tn~~~~~VsViD~~t~k~~-~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 342 EKPLLYALSTGDKTLYIHDAESGEEL-RSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp SSCEEEEEETTTTEEEEEETTTCCEE-EEECCC-CSSCCEEEECC
T ss_pred CCeEEEEEcCCCCeEEEEECCCCcEE-EEecCC-CCCceeEECCc
Confidence 97 66664 45899999999988543 444322 22234555554
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.37 E-value=5.2e-10 Score=101.64 Aligned_cols=238 Identities=6% Similarity=0.046 Sum_probs=147.6
Q ss_pred cCeEEEEECCCCCEEEE-------e-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecC-CCcEEEEEecC
Q 010256 234 YHINSISNNSDGETFIS-------A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT-HCNMLAYSSSK 304 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s-------~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~-~~~~l~~~~~d 304 (514)
....+++|++++.++++ + .++.|.+||..+++.. .+. . ....++...+.+++++++ + +++++ +..
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~-~--~~~~~~~~~~~~i~~~~~~g-~l~v~-~~~ 91 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VIC-K--PEVNGYGGIPAGCQCDRDAN-QLFVA-DMR 91 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEE-C--CEETTEECCEEEEEECSSSS-EEEEE-ETT
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEE-e--cccCCCCCCCceEEEecCCC-cEEEE-ECC
Confidence 45678999999999988 5 7899999998755432 111 0 011224467899999999 6 55554 445
Q ss_pred CeEEEEEcCCCccccccccc-eeccCCCCccceeeccccceeEEEEecCCCEEEEEeC----------------CeEEEE
Q 010256 305 GSIRLIDMRQSALCDTHSKL-FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----------------MTLKLW 367 (514)
Q Consensus 305 g~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~----------------~~i~iw 367 (514)
+.|.+||.. ++.. .. ..... ......+.+++++++|+++++... +.|..|
T Consensus 92 ~~l~~~d~~-g~~~----~~~~~~~~--------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (314)
T 1pjx_A 92 LGLLVVQTD-GTFE----EIAKKDSE--------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCF 158 (314)
T ss_dssp TEEEEEETT-SCEE----ECCSBCTT--------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred CCEEEEeCC-CCEE----EEEeccCC--------CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEE
Confidence 588999987 5531 11 11000 001135889999999988877532 345555
Q ss_pred EccCCCCceeeeeeccccccccccccccCCccceeeEEEc----CCCCEEEEE-eCCCcEEEEecC-CCce----eeeee
Q 010256 368 DINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS----GDGGRVATG-SYSNLFRVFGCS-EGSA----ESTTL 437 (514)
Q Consensus 368 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~s~-~~dg~i~iwd~~-~~~~----~~~~~ 437 (514)
|.. ++.. .+..+... ...++|+ |+++.|+.+ ..++.|++|++. ++.. ....+
T Consensus 159 ~~~--g~~~-~~~~~~~~---------------~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 220 (314)
T 1pjx_A 159 TTD--GQMI-QVDTAFQF---------------PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI 220 (314)
T ss_dssp CTT--SCEE-EEEEEESS---------------EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC
T ss_pred CCC--CCEE-EeccCCCC---------------cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC
Confidence 433 3322 22111111 1278999 999765544 567899999986 3321 11233
Q ss_pred cCCC-cceeEEEECCCCCceeecCCCCeEEEeeCC--CCCccccCCcccccccceEEEEEcCCCCEEEEEecC--cEEEE
Q 010256 438 EASK-NPMRRQVQTPSRPSRPLGSLSGVVRRVKGA--DNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN--SLYMY 512 (514)
Q Consensus 438 ~~~~-~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~--~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~--~~~i~ 512 (514)
..+. ..+..+++.++++++++...++.|.+++.. +.. .....+...+.+++|+|+++.|.+++.+ ++..|
T Consensus 221 ~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~-----~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~ 295 (314)
T 1pjx_A 221 PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPK-----MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF 295 (314)
T ss_dssp CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCS-----EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEe-----EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEE
Confidence 3443 567889999999988887777777774322 111 1111234678999999999977766644 77776
Q ss_pred e
Q 010256 513 Y 513 (514)
Q Consensus 513 ~ 513 (514)
.
T Consensus 296 ~ 296 (314)
T 1pjx_A 296 E 296 (314)
T ss_dssp E
T ss_pred e
Confidence 4
No 206
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.37 E-value=9.6e-10 Score=98.89 Aligned_cols=234 Identities=8% Similarity=0.063 Sum_probs=146.1
Q ss_pred cceEEEEEcCC-CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 36 DIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 36 ~~V~~~~~s~~-g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
..-.+..|+|+ +.++++...++.|..|+..+++.. .+. .. ..
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~------------------------~~~-~~------------~~ 55 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ------------------------RVT-MD------------AP 55 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE------------------------EEE-CS------------SC
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE------------------------EEe-CC------------Cc
Confidence 34568899995 456666667889999998765421 111 11 55
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
+.++++ .++|+++++ . ++.|.+||..+++.........
T Consensus 56 ~~~i~~--~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~-------------------------------------- 93 (297)
T 3g4e_A 56 VSSVAL--RQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDN-------------------------------------- 93 (297)
T ss_dssp EEEEEE--BTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCT--------------------------------------
T ss_pred eEEEEE--CCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCC--------------------------------------
Confidence 889999 567775444 4 5689999998877543322110
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cC---------CeEEEEeccCC
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD---------LRINLWNLEIS 264 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d---------~~i~iwd~~~~ 264 (514)
......+++++++|+|+++++. .. ..-.+|.+...
T Consensus 94 -----------------------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~ 138 (297)
T 3g4e_A 94 -----------------------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD 138 (297)
T ss_dssp -----------------------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT
T ss_pred -----------------------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC
Confidence 0011346788899999877764 22 23455555433
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc--CCCccccccccceeccCCCCccceeecccc
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM--RQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
.....+ .........++|+|++..++++.+.++.|.+||+ .++.... .+.+.. +..+..
T Consensus 139 g~~~~~--------~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~--~~~~~~---------~~~~~~ 199 (297)
T 3g4e_A 139 HHVKKY--------FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN--RRSVYK---------LEKEEQ 199 (297)
T ss_dssp SCEEEE--------EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE--EEEEEE---------CCGGGC
T ss_pred CCEEEE--------eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC--cEEEEE---------CCCCCC
Confidence 322211 1223456899999999435566667899999997 3443211 011110 112224
Q ss_pred ceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEc-CCCCEEEEEeC
Q 010256 343 SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS-GDGGRVATGSY 418 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~ 418 (514)
....++++++|++.++... +.|.+||..+ ++.+..+..+... +++++|. ||++.|+.++.
T Consensus 200 ~p~g~~~d~~G~lwva~~~~~~v~~~d~~t-G~~~~~i~~p~~~---------------~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 200 IPDGMCIDAEGKLWVACYNGGRVIRLDPVT-GKRLQTVKLPVDK---------------TTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEEEEBTTSCEEEEEETTTEEEEECTTT-CCEEEEEECSSSB---------------EEEEEEESGGGCEEEEEEB
T ss_pred CCCeeEECCCCCEEEEEcCCCEEEEEcCCC-ceEEEEEECCCCC---------------ceEEEEeCCCCCEEEEEcC
Confidence 6788999999988877654 8899999986 7777777655322 3489998 88887665543
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.36 E-value=3.4e-10 Score=105.29 Aligned_cols=292 Identities=7% Similarity=0.010 Sum_probs=167.3
Q ss_pred CCCCeEEEecCC-----CeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEE
Q 010256 45 KSGDHLATGDRG-----GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (514)
Q Consensus 45 ~~g~~l~tg~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~ 119 (514)
++++++++.... +.|.++|..+.+.. .++..-. .+ .+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv-----------------------~~I~vG~------------~P--gia 124 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRIL-----------------------GMTDGGF------------LP--HPV 124 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEE-----------------------EEEEECS------------SC--EEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEE-----------------------EEEECCC------------CC--ceE
Confidence 577766665542 69999999877742 3332211 33 788
Q ss_pred EeeCCCCcEEEEee----------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 120 WCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 120 ~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
+ ++++++++++. .++.|.++|..+++.............. ....+..+.++|||+.+
T Consensus 125 ~--SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~--------~g~~P~~~~~spDGk~l--- 191 (426)
T 3c75_H 125 A--AEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL--------VGTYQWMNALTPDNKNL--- 191 (426)
T ss_dssp E--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC--------BSCCGGGSEECTTSSEE---
T ss_pred E--CCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc--------cCCCcceEEEcCCCCEE---
Confidence 8 67888888775 4679999999999877665543100000 00112378999999988
Q ss_pred cCCCCCCcccCCCC--CCcEEeceeeccccccccccccccccccCccCeEEEEECCCC-CEEEEe-cCCeEEEEeccCCC
Q 010256 190 FGCASNDSSFPPGG--VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISN 265 (514)
Q Consensus 190 ~~~~~~~~~~~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~ 265 (514)
+++.. ++.|.+.| ....+. ...+..+ .. ....|++ ..+++. .||++.+.+..+++
T Consensus 192 ---------yV~n~~~~~~VsVID-~~t~kv------v~~I~v~---g~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~ 250 (426)
T 3c75_H 192 ---------LFYQFSPAPAVGVVD-LEGKTF------DRMLDVP---DC--YHIFPASPTVFYMNCRDGSLARVDFADGE 250 (426)
T ss_dssp ---------EEEECSSSCEEEEEE-TTTTEE------EEEEECC---SE--EEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred ---------EEEecCCCCeEEEEE-CCCCeE------EEEEEcC---Cc--eeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence 55442 57788888 322221 1111011 01 1222332 333333 66666666664332
Q ss_pred ceeeeeccCCCcccccCCc-eEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 266 QSFNIVDVKPANMEDLTEV-ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~-i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
... ... ..+.....+ ...+.+.+++ ..++..+..+.+.+.|+....... ...+....... . .........
T Consensus 251 v~~-~~~---~~~~v~~~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v--~~~~~~~~~~~-i-~~g~~p~g~ 321 (426)
T 3c75_H 251 TKV-TNT---EVFHTEDELLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATF--RAPIEALTEAE-R-ADDWRPGGW 321 (426)
T ss_dssp CEE-EEC---CCCSCTTSCBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEE--CCCEESSCTTT-G-GGTEEECSS
T ss_pred EEE-Eee---eeeccCCCceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEE--eeeeeeccccc-c-ccccccCCc
Confidence 221 100 001111111 1235678888 555556778999999997654211 11111100000 0 000001123
Q ss_pred eEEEEecCCCEEEEEe-----------CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC-E
Q 010256 345 SDIKFARNGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-R 412 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~ 412 (514)
..++++|+++.++... .+.|.++|..+ .+.+.++....... .++|+|||+ +
T Consensus 322 ~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg~~P~----------------gia~spDg~~~ 384 (426)
T 3c75_H 322 QQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIELGHEID----------------SINVSQDAEPL 384 (426)
T ss_dssp SCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEEC----------------EEEECCSSSCE
T ss_pred eeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEECCCCcC----------------eEEEccCCCEE
Confidence 3478999988777642 14799999998 88888887554322 899999999 8
Q ss_pred EEEEe-CCCcEEEEecCCCcee
Q 010256 413 VATGS-YSNLFRVFGCSEGSAE 433 (514)
Q Consensus 413 l~s~~-~dg~i~iwd~~~~~~~ 433 (514)
+++.. .++.|.++|+.+++..
T Consensus 385 lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 385 LYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp EEEEETTTTEEEEEETTTCCEE
T ss_pred EEEEcCCCCeEEEEECCCCCEE
Confidence 88877 5899999999988544
No 208
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.33 E-value=5.1e-10 Score=102.95 Aligned_cols=270 Identities=6% Similarity=-0.016 Sum_probs=158.9
Q ss_pred cceEEEEEcCCCCeEEEec--CCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 36 DIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
..+..++++|+|+++++.. .++.++||.+.+++.. .+ |... ....+|- .
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-----~~----------p~~~--~~~~~~~------------~ 67 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-----PF----------PPQS--GNAIITF------------D 67 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-----ES----------CCCC--SSCCCCC------------S
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-----cC----------CCcc--cCcccce------------e
Confidence 5789999999999988863 2343677776533311 00 0000 0011222 5
Q ss_pred ceeEEEEeeCCCCcEEEEeeC-----CCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 114 KINKIRWCQSANSALYLLSTN-----DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
.+..+++ .++++++++-.. ++.|.+||+.+++......+...
T Consensus 68 ~p~gv~~--d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~------------------------------- 114 (343)
T 2qe8_A 68 TVLGIKS--DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPP------------------------------- 114 (343)
T ss_dssp CEEEEEE--CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTT-------------------------------
T ss_pred EeeEEEE--cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChh-------------------------------
Confidence 6899999 566765555433 57899999998875544332200
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-----cCCeEEEEeccC
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-----DDLRINLWNLEI 263 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-----~d~~i~iwd~~~ 263 (514)
...+...+..+++++++..+..+ .++.|.+||+.+
T Consensus 115 ----------------------------------------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~ 154 (343)
T 2qe8_A 115 ----------------------------------------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT 154 (343)
T ss_dssp ----------------------------------------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT
T ss_pred ----------------------------------------hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC
Confidence 00112345678888765444333 368999999985
Q ss_pred CCceeeeeccCCCcccccCCce-EEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccc
Q 010256 264 SNQSFNIVDVKPANMEDLTEVI-TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~i-~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
++ ..+++ .+|.... ....+.+++ ..+.+.+.++.++.|. .
T Consensus 155 g~-~~r~~-------~~~~~~~~~~~~~~~~g-~~~~~~~~~g~~~~~~------------------------------~ 195 (343)
T 2qe8_A 155 GL-AARVL-------QGYPGIAPEDIDLVIDG-VPVQIGQPDGTVIRPH------------------------------L 195 (343)
T ss_dssp CC-EEEEC-------TTCTTTSCCSCCCEETT-EECBEECTTSCEECCC------------------------------C
T ss_pred CC-EEEEe-------cCCCcccccccceeECC-EEEEeccCCCceecee------------------------------c
Confidence 54 33321 1111100 013455566 6677777777765542 1
Q ss_pred ceeEEEEecCCCEEEEEeC--CeEEEEEccC--CCCc-----ee--eeeeccccccccccccccCCccceeeEEEcCCCC
Q 010256 343 SISDIKFARNGRHILSRDY--MTLKLWDINM--DSGP-----VA--TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~--~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 411 (514)
.+..++|+|+|+.|+.++. ..+..++... .+.. .. ...++... ...++++++|+
T Consensus 196 ~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~---------------pdgia~d~~G~ 260 (343)
T 2qe8_A 196 GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPI---------------CDGISIDKDHN 260 (343)
T ss_dssp CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCS---------------CSCEEECTTCC
T ss_pred ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCC---------------CceEEECCCCC
Confidence 3577999999998888654 4555555321 0110 00 01111111 11699999999
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeeecC-CCcceeEEEECCCCCceeecCCC
Q 010256 412 RVATGSYSNLFRVFGCSEGSAESTTLEA-SKNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 412 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d 462 (514)
++++...++.|.+||.++++ ....... +...+..+++.++++++++.+..
T Consensus 261 l~va~~~~~~V~~~d~~~G~-~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 261 IYVGDLAHSAIGVITSADRA-YKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp EEEEEGGGTEEEEEETTTTE-EEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred EEEEccCCCeEEEEECCCCC-EEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 99998889999999985553 2222222 24567899999998877776543
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.31 E-value=2.6e-09 Score=100.38 Aligned_cols=268 Identities=10% Similarity=0.111 Sum_probs=154.4
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
.....|+| ++++.++++...++.|++||..+++........ ..+ .++++++++.+
T Consensus 131 ~~P~~la~--d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~----------------~~~-~ia~~~~g~~l------ 185 (409)
T 3hrp_A 131 KYMWGIAA--VGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF----------------KGG-KPAVTKDKQRV------ 185 (409)
T ss_dssp CCEEEEEE--CSTTEEEEEETTTTEEEEEETTTTEEEEEEETC----------------CBC-BCEECTTSSEE------
T ss_pred CCceEEEE--eCCCCEEEEecCCCcEEEEECCCCEEEEeeccC----------------CCC-ceeEecCCCcE------
Confidence 35778899 567777777777899999999988876554432 112 26889999876
Q ss_pred CCCCcccCCCCCC--cEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 193 ASNDSSFPPGGVS--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 193 ~~~~~~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+.+..++ .|..++ .. ..................+.+++++|++..|..+ .++.|+.||..+....
T Consensus 186 ------~~~d~~~~~~I~~~d-~~---~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-- 253 (409)
T 3hrp_A 186 ------YSIGWEGTHTVYVYM-KA---SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-- 253 (409)
T ss_dssp ------EEEBSSTTCEEEEEE-GG---GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE--
T ss_pred ------EEEecCCCceEEEEE-cC---CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE--
Confidence 5555544 566555 21 1110001100001134567889999954445556 7889999999855422
Q ss_pred eeccCCCcccccCCce-E-EEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccC-CCCcc--ceeeccccce
Q 010256 270 IVDVKPANMEDLTEVI-T-SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE-APGTR--SFFTEIIASI 344 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i-~-~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~i 344 (514)
++... ...+....- . .++|+|++..++++-..++.|+.|+..... ..+.+.. ..... ..........
T Consensus 254 ~~~~~--~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~------~~~~g~~~~~g~~dg~~~~~~~~~P 325 (409)
T 3hrp_A 254 LIKQL--ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC------EWFCGSATQKTVQDGLREEALFAQP 325 (409)
T ss_dssp EEEEC--CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE------EEEEECTTCCSCBCEEGGGCBCSSE
T ss_pred EEecc--cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE------EEEEeCCCCCCcCCCcccccEeCCC
Confidence 11000 011111111 3 899999643777777778999999876431 1111111 00000 0000112357
Q ss_pred eEEEEecCCCEEEEEe-C-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcE
Q 010256 345 SDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (514)
..++++|+|+++++-. . ++|+.|++.. +. +.++.++.....................++++++|.++++-..+++|
T Consensus 326 ~gia~d~dG~lyvad~~~~~~I~~~~~~~-G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~I 403 (409)
T 3hrp_A 326 NGMTVDEDGNFYIVDGFKGYCLRKLDILD-GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAI 403 (409)
T ss_dssp EEEEECTTCCEEEEETTTTCEEEEEETTT-TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEE
T ss_pred eEEEEeCCCCEEEEeCCCCCEEEEEECCC-CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeE
Confidence 8999999999777755 5 8999999764 43 44554441110000000000111223489999998888888888888
Q ss_pred EEEec
Q 010256 423 RVFGC 427 (514)
Q Consensus 423 ~iwd~ 427 (514)
+.+++
T Consensus 404 r~i~~ 408 (409)
T 3hrp_A 404 RKYAV 408 (409)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88765
No 210
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.31 E-value=9.2e-09 Score=95.18 Aligned_cols=286 Identities=6% Similarity=-0.101 Sum_probs=163.2
Q ss_pred CCCCcEEEEeeC--CC---eEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCc
Q 010256 123 SANSALYLLSTN--DK---TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (514)
Q Consensus 123 ~~~~~~l~s~~~--d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (514)
.+++.+++++.. .. .|.++|..+++......... .+ .++++|||+.+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~----------------~p-~i~~spDg~~l----------- 80 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF----------------LP-NPVAAHSGSEF----------- 80 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC----------------CC-CeEECCCCCEE-----------
Confidence 456666666643 33 88999999988765444321 22 78999999987
Q ss_pred ccCCC----------CCCcEEeceeeccccccccccc--cccccccCccCeEEEEECCCCCEEEEe-c--CCeEEEEecc
Q 010256 198 SFPPG----------GVSSLRLPVVVTSQETNLVAGC--RRIYAHAHDYHINSISNNSDGETFISA-D--DLRINLWNLE 262 (514)
Q Consensus 198 ~~~~~----------~~~~i~i~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~-~--d~~i~iwd~~ 262 (514)
+... .++.|.++| ....+....... ...+. +......++|+|||++|+.+ . ++.|.++| .
T Consensus 81 -yv~n~~~~~~~rg~~~~~v~viD-~~t~~~~~~i~~~~~~~~~--~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~ 155 (373)
T 2mad_H 81 -ALASTSFSRIAKGKRTDYVEVFD-PVTFLPIADIELPDAPRFD--VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-Q 155 (373)
T ss_pred -EEEeccccccccCCCCCeEEEEE-CCCCcEEEEEECCCccccc--cCCCccceEECCCCCEEEEEecCCCCeEEEEE-C
Confidence 4433 367788888 332211110000 00000 01234589999999999987 3 58899999 8
Q ss_pred CCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccc
Q 010256 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
+.+....++. ... ++.+.|++...+++.+.||.+.++|. +++.... ..... .+.+...
T Consensus 156 t~~~~~~~i~--------~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~----~~~~~------~~~~~~p 213 (373)
T 2mad_H 156 GGSSDDQLLS--------SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA----GLVGA------MLTAAQN 213 (373)
T ss_pred CCCEEeEEcC--------CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE----Eeccc------cccCCcc
Confidence 6654322011 111 25566777677888889999999999 7665311 00000 0000001
Q ss_pred ceeEEEEecCCCE-EEEEeCCeEEEEEccCCC-CceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC--
Q 010256 343 SISDIKFARNGRH-ILSRDYMTLKLWDINMDS-GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-- 418 (514)
Q Consensus 343 ~i~~~~~s~~g~~-l~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-- 418 (514)
......+.+++.. ++....+.+.+.|+.... +.+..+........ ..- ........++++||++.|+.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~---~~~--~~p~g~~~~~~s~d~~~lyV~~~~~ 288 (373)
T 2mad_H 214 LLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRK---ADT--WRPGGWQQVAYLKSSDGIYLLTSEQ 288 (373)
T ss_pred eeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccc---ccc--eecCceEeEEECCCCCEEEEEeccC
Confidence 1223456666544 334444889999986411 11222211110000 000 00001124789999998777543
Q ss_pred --------CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCC-ceeecC-CCCeEEEeeC
Q 010256 419 --------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGS-LSGVVRRVKG 470 (514)
Q Consensus 419 --------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s-~d~~v~i~~~ 470 (514)
++.|.++|+.+++.. ..+... .....+.++||++ .++++. .++.|.+++.
T Consensus 289 ~~~~~~~~~~~V~VID~~t~~vv-~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 289 SAWKLHAAAKEVTSVTGLVGQTS-SQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred CcccccCCCCeEEEEECCCCEEE-EEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 357999999987443 444322 2577999999999 677776 5889988543
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.31 E-value=3.1e-10 Score=114.78 Aligned_cols=160 Identities=8% Similarity=0.021 Sum_probs=95.6
Q ss_pred CccCeEEEEECCCCCEEEEe-c----CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC--
Q 010256 232 HDYHINSISNNSDGETFISA-D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-- 304 (514)
Q Consensus 232 h~~~v~~~~~~~~~~~l~s~-~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-- 304 (514)
|...+..+.|+|||++|+.. . ...|+++|+.++..... .+..+....... +++++..+++....+
T Consensus 232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~-------~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~ 303 (693)
T 3iuj_A 232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL-------TVQGDLDADVSL-VDNKGSTLYLLTNRDAP 303 (693)
T ss_dssp GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE-------EEECSSSSCEEE-EEEETTEEEEEECTTCT
T ss_pred CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE-------EEeCCCCceEEE-EeccCCEEEEEECCCCC
Confidence 33456788999999988653 2 35899999976542222 223334444444 666664555555544
Q ss_pred -CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE--eC--CeEEEEEccCCCCceeee
Q 010256 305 -GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--DY--MTLKLWDINMDSGPVATF 379 (514)
Q Consensus 305 -g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--~~--~~i~iwd~~~~~~~~~~~ 379 (514)
+.|..+|+.++.... .+. +..|...+. .|+++++.|+.. .+ ..|++||+. +.....+
T Consensus 304 ~~~l~~~d~~~~~~~~--~~~------------l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--g~~~~~l 365 (693)
T 3iuj_A 304 NRRLVTVDAANPGPAH--WRD------------LIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--GKRVREV 365 (693)
T ss_dssp TCEEEEEETTSCCGGG--CEE------------EECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT--SCEEEEE
T ss_pred CCEEEEEeCCCCCccc--cEE------------EecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC--CCeeEEe
Confidence 678899988754210 111 222223343 889999988764 33 378888876 3444444
Q ss_pred eeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC----CcEEEEecCCCc
Q 010256 380 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGS 431 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~ 431 (514)
...... .+..+.++++++.|+....+ +.++.||+.+++
T Consensus 366 ~~p~~~--------------~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 366 ALPGLG--------------SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp CCSSSS--------------EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred ecCCCc--------------eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 322110 02256677888766655444 789999998764
No 212
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.31 E-value=1.3e-09 Score=98.41 Aligned_cols=232 Identities=11% Similarity=0.044 Sum_probs=143.1
Q ss_pred ccccceEEEEEcCCCC-eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 33 QEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
..........|+|+|+ +++++..++.|..|+.. ++. ..+..+.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~------------------------~~~~~~~----------- 85 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV------------------------DVLLDAT----------- 85 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE------------------------EEEEESC-----------
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE------------------------EEEeCCC-----------
Confidence 4456678899999998 66777788999999863 321 1222222
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..+..+++ .++|+++++...++.|.+|+.. ++.........
T Consensus 86 -~~~~gl~~--d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~----------------------------------- 126 (305)
T 3dr2_A 86 -AFTNGNAV--DAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYA----------------------------------- 126 (305)
T ss_dssp -SCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEECEET-----------------------------------
T ss_pred -CccceeeE--CCCCCEEEEECCCCEEEEECCC-CCEEEEEeccC-----------------------------------
Confidence 45888999 6677766665566889999875 44322211000
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEE----e-c-------------C
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS----A-D-------------D 253 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s----~-~-------------d 253 (514)
......+++++++++|+++++ | . .
T Consensus 127 --------------------------------------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~ 168 (305)
T 3dr2_A 127 --------------------------------------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAH 168 (305)
T ss_dssp --------------------------------------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSC
T ss_pred --------------------------------------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCC
Confidence 000123456777777777765 3 1 2
Q ss_pred CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC------CeEEEEEcCCCccccccccceec
Q 010256 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFEE 327 (514)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~ 327 (514)
+.|..||..+++.. .+ . .......++|+|++ +.|+.+... +.|.+|++..+... . ...+..
T Consensus 169 ~~v~~~d~~~g~~~-~~--------~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~-~-~~~~~~ 235 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQ-RM--------A-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALH-D-RRHFAS 235 (305)
T ss_dssp EEEEEECSSSCCCE-EE--------E-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEE-E-EEEEEC
T ss_pred CeEEEEcCCCCcEE-EE--------e-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCcc-C-CeEEEE
Confidence 45777776544322 11 1 23456789999999 666666554 78999998764311 0 111110
Q ss_pred cCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEc
Q 010256 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (514)
...+....++++++|++.++. .+.|.+|+.. ++.+..+..+.. +..++|+
T Consensus 236 -----------~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~--g~~~~~~~~~~~----------------~~~~~f~ 285 (305)
T 3dr2_A 236 -----------VPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD--GQLLGHIPTPGT----------------ASNCTFD 285 (305)
T ss_dssp -----------CSSSCCCSEEECTTSCEEECC-SSEEEEECTT--SCEEEEEECSSC----------------CCEEEEC
T ss_pred -----------CCCCCCCeEEECCCCCEEEec-CCcEEEECCC--CCEEEEEECCCc----------------eeEEEEe
Confidence 011345678899999965554 4459999874 677766655432 1278999
Q ss_pred CCCCEEEEEeCCC
Q 010256 408 GDGGRVATGSYSN 420 (514)
Q Consensus 408 ~~~~~l~s~~~dg 420 (514)
++++.|..++.++
T Consensus 286 ~d~~~L~it~~~~ 298 (305)
T 3dr2_A 286 QAQQRLFITGGPC 298 (305)
T ss_dssp TTSCEEEEEETTE
T ss_pred CCCCEEEEEcCCe
Confidence 9999888777654
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.30 E-value=1.9e-09 Score=96.92 Aligned_cols=226 Identities=10% Similarity=0.008 Sum_probs=139.7
Q ss_pred cCeEEEEECCCCC-EEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 234 YHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 234 ~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
.-..+..|++++. ++++. .++.|..||..++... .+ .....+.+++++|++ +++++ . ++.|.+||
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~--~~--------~~~~~~~~i~~~~dG-~l~v~-~-~~~l~~~d 79 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ--RV--------TMDAPVSSVALRQSG-GYVAT-I-GTKFCALN 79 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE--EE--------ECSSCEEEEEEBTTS-SEEEE-E-TTEEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE--EE--------eCCCceEEEEECCCC-CEEEE-E-CCeEEEEE
Confidence 3456788999655 45555 7899999999855432 11 134678999999999 65554 3 67899999
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-e---------CCeEEEEEccCCCCceeeeee
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D---------YMTLKLWDINMDSGPVATFQV 381 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~---------~~~i~iwd~~~~~~~~~~~~~ 381 (514)
..+++.. .+...... .....+..++++|+|+++++. . ...-.||.+...++.. .+..
T Consensus 80 ~~~g~~~-----~~~~~~~~-------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~ 146 (297)
T 3g4e_A 80 WKEQSAV-----VLATVDND-------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFD 146 (297)
T ss_dssp TTTTEEE-----EEEECCTT-------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEE
T ss_pred CCCCcEE-----EEEecCCC-------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE-EEee
Confidence 9876531 11111000 011357889999999977763 1 1234666665423322 2221
Q ss_pred ccccccccccccccCCccceeeEEEcCCCCEEE-EEeCCCcEEEEec--CCCcee----eeeecCCCcceeEEEECCCCC
Q 010256 382 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGC--SEGSAE----STTLEASKNPMRRQVQTPSRP 454 (514)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~--~~~~~~----~~~~~~~~~~v~~~~~~~~~~ 454 (514)
.... ...++|+||++.|+ +.+.++.|.+|++ .++... ...+..+......+++.++|+
T Consensus 147 ~~~~---------------pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~ 211 (297)
T 3g4e_A 147 QVDI---------------SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK 211 (297)
T ss_dssp EESB---------------EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC
T ss_pred cccc---------------ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC
Confidence 1111 12799999998765 5556789999987 344221 122223345677899999999
Q ss_pred ceeecCCCCeEEEeeC--CCCCccccCCcccccccceEEEEEc-CCCCEEEEEe
Q 010256 455 SRPLGSLSGVVRRVKG--ADNSALDANGNAFDFSMKLLHLAWH-PSENSIACAA 505 (514)
Q Consensus 455 ~l~s~s~d~~v~i~~~--~~~~~~~~~~~~~~~~~~v~~~~~s-pd~~~l~~~~ 505 (514)
+.++...++.|.+++- .++.. .+ ......+++++|. ||++.|.+++
T Consensus 212 lwva~~~~~~v~~~d~~tG~~~~-~i----~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 212 LWVACYNGGRVIRLDPVTGKRLQ-TV----KLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEEEETTTEEEEECTTTCCEEE-EE----ECSSSBEEEEEEESGGGCEEEEEE
T ss_pred EEEEEcCCCEEEEEcCCCceEEE-EE----ECCCCCceEEEEeCCCCCEEEEEc
Confidence 8888777777777332 11111 11 1134679999998 8988877554
No 214
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.29 E-value=1e-09 Score=99.12 Aligned_cols=232 Identities=10% Similarity=0.013 Sum_probs=143.3
Q ss_pred CccCeEEEEECCCCC-EEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010256 232 HDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (514)
Q Consensus 232 h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~ 309 (514)
.........|+|+++ ++++. .++.|..|+.. ++ .. .+......+..++++++| +++++...++.|.+
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~--------~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VD--------VLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITR 111 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EE--------EEEESCSCEEEEEECTTS-CEEEEETTTTEEEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EE--------EEeCCCCccceeeECCCC-CEEEEECCCCEEEE
Confidence 334567899999998 55566 78999999884 33 21 122245668999999998 77666556688999
Q ss_pred EEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE----Ee--------------CCeEEEEEccC
Q 010256 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS----RD--------------YMTLKLWDINM 371 (514)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~----~~--------------~~~i~iwd~~~ 371 (514)
|+.. ++. ..+..... ......+.+++++|+|+++++ |. .+.|..+|..+
T Consensus 112 ~~~~-g~~-----~~~~~~~~-------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 112 SDAD-GQA-----HLLVGRYA-------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp ECTT-SCE-----EEEECEET-------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred ECCC-CCE-----EEEEeccC-------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 9975 442 11111000 001135778999999998886 32 13566666543
Q ss_pred CCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC------CcEEEEecCCCceee--ee-ecCCCc
Q 010256 372 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS------NLFRVFGCSEGSAES--TT-LEASKN 442 (514)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~--~~-~~~~~~ 442 (514)
++... +. .... ...++|+||++.|+.+... +.|++|++..+. +. .. ......
T Consensus 179 -g~~~~-~~-~~~~---------------p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~ 239 (305)
T 3dr2_A 179 -SPLQR-MA-DLDH---------------PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDG 239 (305)
T ss_dssp -CCCEE-EE-EESS---------------EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSS
T ss_pred -CcEEE-Ee-cCCC---------------CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCC
Confidence 43322 22 1111 1278999999987776654 789999987543 11 11 112233
Q ss_pred ceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 443 PMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 443 ~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
....+++.++|++.++. .++ |.+++-... .. ..+.....+.+++|+|+++.|.+++.++++.+.
T Consensus 240 ~pdgi~~d~~G~lwv~~-~~g-v~~~~~~g~----~~-~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 240 LPDGFCVDRGGWLWSSS-GTG-VCVFDSDGQ----LL-GHIPTPGTASNCTFDQAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp CCCSEEECTTSCEEECC-SSE-EEEECTTSC----EE-EEEECSSCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred CCCeEEECCCCCEEEec-CCc-EEEECCCCC----EE-EEEECCCceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence 45578899999965554 555 555221100 00 011112358899999999999998888887664
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.28 E-value=1.7e-10 Score=105.68 Aligned_cols=179 Identities=9% Similarity=0.128 Sum_probs=122.2
Q ss_pred CeEEEEECCCCCEEEEecCCeEEEEeccCCCceee--eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 235 HINSISNNSDGETFISADDLRINLWNLEISNQSFN--IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
.++.+++++...++++|....+++|+++....... -.+..+.....+.. |+.++| ++ ++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HG-DQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ET-TEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CC-CEEEEE-cCCcEEEEEc
Confidence 68899999999999999434677798764331000 00011111223556 999999 77 788888 8899999999
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE-EeCCeEEEEEccCCCCceeeeeecccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
++.... .. ...|...+.++.+.+.. +++ .++|.|.+||++. +.... +..
T Consensus 114 ~sl~~~----~~------------~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~-~~~~~----~~~------- 163 (388)
T 1xip_A 114 EELSEF----RT------------VTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRT-KSTKQ----LAQ------- 163 (388)
T ss_dssp SSTTCE----EE------------EEECSSCEEEEEECSSE--EEEEETTSEEEEEETTT-CCEEE----EEE-------
T ss_pred hhhhcc----Cc------------cceeecceeeEEecCCC--EEEEECCCCEEEEEccC-Ccccc----ccC-------
Confidence 875432 11 12233457777776543 555 4669999999986 44332 111
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee-eeee------c---CCCcceeEEEECCCCCceee
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-STTL------E---ASKNPMRRQVQTPSRPSRPL 458 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~------~---~~~~~v~~~~~~~~~~~l~s 458 (514)
.|.+++|||+| ++.|..||.+++|+...+... ..++ . +|...|.++.|.+++.++++
T Consensus 164 --------~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 164 --------NVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp --------SEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred --------CceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 14599999999 678899999999998876421 3344 2 47788999999999998877
No 216
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.24 E-value=3.3e-09 Score=98.68 Aligned_cols=288 Identities=9% Similarity=0.030 Sum_probs=168.8
Q ss_pred eeCCCCcEEEEeeC-C----CeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 121 CQSANSALYLLSTN-D----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 121 ~~~~~~~~l~s~~~-d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
.|.+++..++++.. + +.|.++|..+++.......... + .+.++|||+.+
T Consensus 79 ~p~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~----------------P-gia~SpDgk~l--------- 132 (426)
T 3c75_H 79 APAPDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL----------------P-HPVAAEDGSFF--------- 132 (426)
T ss_dssp CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS----------------C-EEEECTTSSCE---------
T ss_pred cCCCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC----------------C-ceEECCCCCEE---------
Confidence 44566666666544 2 7999999999998777665432 3 67899999988
Q ss_pred CcccCCC----------CCCcEEeceeeccccccccccc--cccccccCccCeEEEEECCCCCEEEEe-c--CCeEEEEe
Q 010256 196 DSSFPPG----------GVSSLRLPVVVTSQETNLVAGC--RRIYAHAHDYHINSISNNSDGETFISA-D--DLRINLWN 260 (514)
Q Consensus 196 ~~~~~~~----------~~~~i~i~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~-~--d~~i~iwd 260 (514)
+++. .++.|.++| ....+....... ...+ ........+.|+|||++++.+ . ++.|.+.|
T Consensus 133 ---yVan~~~~~~~~G~~~~~VsviD-~~t~~vv~~I~v~g~~r~--~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID 206 (426)
T 3c75_H 133 ---AQASTVFERIARGKRTDYVEVFD-PVTFLPIADIELPDAPRF--LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVD 206 (426)
T ss_dssp ---EEEEEEEEETTEEEEEEEEEEEC-TTTCCEEEEEEETTCCCC--CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEE
T ss_pred ---EEEeccccccccCCCCCEEEEEE-CCCCcEEEEEECCCcccc--ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEE
Confidence 5544 356888888 333222111000 0000 001234568999999999887 3 68999999
Q ss_pred ccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecc
Q 010256 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (514)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (514)
+.+.+....+ . .. . +....|++...+++.+.||.+.+.++.+++........+.....
T Consensus 207 ~~t~kvv~~I-~-----v~---g---~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~---------- 264 (426)
T 3c75_H 207 LEGKTFDRML-D-----VP---D---CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDE---------- 264 (426)
T ss_dssp TTTTEEEEEE-E-----CC---S---EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTS----------
T ss_pred CCCCeEEEEE-E-----cC---C---ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCC----------
Confidence 9976644332 1 11 1 13345555467777788888888888555432110011111110
Q ss_pred ccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCc--eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe
Q 010256 341 IASISDIKFARNGRHILSRDY-MTLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (514)
Q Consensus 341 ~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (514)
.....+.+.+++..++.... +.|.+.|+.. ... +..+...... .+....... ....++++|+++.++...
T Consensus 265 -p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~-~~~~v~~~~~~~~~~--~i~~g~~p~---g~~~va~s~dg~rlyVa~ 337 (426)
T 3c75_H 265 -LLINHPAFSLRSGRLVWPTYTGKIFQADLTA-EGATFRAPIEALTEA--ERADDWRPG---GWQQTAYHRQSDRIYLLV 337 (426)
T ss_dssp -CBCSCCEECTTTCEEEEEBTTSEEEEEEECS-SCEEECCCEESSCTT--TGGGTEEEC---SSSCEEEEGGGTEEEEEE
T ss_pred -ceeeEeeecCCCCEEEEEeCCCcEEEEeccC-CceEEeeeeeecccc--ccccccccC---CceeeEEcCCCCEEEEEe
Confidence 01123567888887766554 8999999864 221 1111110000 000000000 011478999998777654
Q ss_pred C----------CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCC-ceeecC-CCCeEEEeeCC
Q 010256 418 Y----------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGS-LSGVVRRVKGA 471 (514)
Q Consensus 418 ~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s-~d~~v~i~~~~ 471 (514)
. ++.|.++|+.+.+.. ..+... .....+.++|+++ ++++.. .++.|.+++..
T Consensus 338 ~~~~~gthk~~s~~VsVID~~T~kvv-~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 338 DQRDEWKHKAASRFVVVLNAETGERI-NKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp EECCTTCTTSCEEEEEEEETTTCCEE-EEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred cccccccccCCCCEEEEEECCCCeEE-EEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence 2 357999999987544 444322 2477899999999 777776 58999995544
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.24 E-value=8.7e-09 Score=93.91 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=88.4
Q ss_pred CeEEEEECCCCCEEEEe-cC------CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEE-EEEecCCe
Q 010256 235 HINSISNNSDGETFISA-DD------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGS 306 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l-~~~~~dg~ 306 (514)
.+++++++|+|+++++. .+ +.|..++ + .....+ .........++|+|++ +.+ ++.+.++.
T Consensus 135 ~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~-g~~~~~--------~~~~~~~~~i~~s~dg-~~lyv~~~~~~~ 202 (326)
T 2ghs_A 135 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--K-GKVTKL--------FADISIPNSICFSPDG-TTGYFVDTKVNR 202 (326)
T ss_dssp EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--T-TEEEEE--------EEEESSEEEEEECTTS-CEEEEEETTTCE
T ss_pred CCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--C-CcEEEe--------eCCCcccCCeEEcCCC-CEEEEEECCCCE
Confidence 46789999999877765 32 3455555 2 322211 1123346789999999 555 55556789
Q ss_pred EEEEEcC--CC-ccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeec
Q 010256 307 IRLIDMR--QS-ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH 382 (514)
Q Consensus 307 i~~wd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~ 382 (514)
|.+||+. ++ .... .+.+.. +.........++++++|.+.++... +.|.+||.. ++.+..+..+
T Consensus 203 I~~~d~~~~~Gl~~~~--~~~~~~---------~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~--g~~~~~i~~~ 269 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGK--AEVFID---------STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD--GNHIARYEVP 269 (326)
T ss_dssp EEEEEBCTTTCCBSSC--CEEEEE---------CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT--CCEEEEEECS
T ss_pred EEEEEcccccCCcccC--ceEEEE---------CCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC--CCEEEEEECC
Confidence 9999986 44 3211 011110 0111234678999999988777644 889999983 6666665544
Q ss_pred cccccccccccccCCccceeeEEEc-CCCCEEEEEeC
Q 010256 383 EHLRPKLCDLYENDSIFDKFECCLS-GDGGRVATGSY 418 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~ 418 (514)
... +.+++|+ ++++.|+.++.
T Consensus 270 ~~~---------------~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 270 GKQ---------------TTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CSB---------------EEEEEEESTTSCEEEEEEB
T ss_pred CCC---------------cEEEEEecCCCCEEEEEec
Confidence 321 3489998 88887655543
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.23 E-value=5.7e-09 Score=98.02 Aligned_cols=259 Identities=9% Similarity=-0.014 Sum_probs=148.4
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
.....|+|+++|+++++...++.|++||..++... ...... ...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~-----------------------~~~~~~-------------~~~ 174 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT-----------------------TVHPGF-------------KGG 174 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE-----------------------EEEETC-------------CBC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE-----------------------EeeccC-------------CCC
Confidence 56889999999998888778899999998766531 111111 223
Q ss_pred eEEEEeeCCCCcEEEEeeCCC--eEEEEEcCccEEEEEe-eccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 116 NKIRWCQSANSALYLLSTNDK--TIKLWKVQEKKVKKVF-DWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~--~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
. ++| .+++..|+++..++ .|.+++...+...... ..... ....+..++++|++..+
T Consensus 175 ~-ia~--~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~------------~~~~p~~iav~p~~g~l------ 233 (409)
T 3hrp_A 175 K-PAV--TKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGST------------FSGKIGAVALDETEEWL------ 233 (409)
T ss_dssp B-CEE--CTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTT------------SCSCCCBCEECTTSSEE------
T ss_pred c-eeE--ecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccch------------hcCCcEEEEEeCCCCeE------
Confidence 3 788 56777888887755 7888887765422222 11000 00122378888844433
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCe--EEEEECCC-CCEEEEe-cCCeEEEEeccCCCcee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHI--NSISNNSD-GETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
+....++.|..|+ .......... . ....++...- ..++|+|+ +.++++- .++.|+.|+.... ..
T Consensus 234 ------yv~d~~~~I~~~d-~~~~~~~~~~-~--~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~ 301 (409)
T 3hrp_A 234 ------YFVDSNKNFGRFN-VKTQEVTLIK-Q--LELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CE 301 (409)
T ss_dssp ------EEECTTCEEEEEE-TTTCCEEEEE-E--CCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EE
T ss_pred ------EEEECCCcEEEEE-CCCCCEEEEe-c--ccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EE
Confidence 3355567788777 3221110000 0 0011222222 38999996 5555555 7899999998632 22
Q ss_pred eeeccC-CCcc------cccCCceEEEEEecCCCcEEEEEe-cCCeEEEEEcCCCccccccccceeccC-CCCcc--cee
Q 010256 269 NIVDVK-PANM------EDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQE-APGTR--SFF 337 (514)
Q Consensus 269 ~~~~~~-~~~~------~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~--~~~ 337 (514)
.+.... .... ...-.....++++|+| +++++-+ .++.|+.||+.++.. ..+.+.. ..... ...
T Consensus 302 ~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v-----~~~~g~~~~~g~~~g~~~ 375 (409)
T 3hrp_A 302 WFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYV-----STVAGQVDVASQIDGTPL 375 (409)
T ss_dssp EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTEE-----EEEEECTTCBSCCCBSTT
T ss_pred EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEE-----EEEeCCCCCCCcCCCChh
Confidence 211110 0000 0012457899999999 7777777 789999999877653 2222210 00000 000
Q ss_pred eccccceeEEEEecCCCEEEEEeC-CeEEEEEc
Q 010256 338 TEIIASISDIKFARNGRHILSRDY-MTLKLWDI 369 (514)
Q Consensus 338 ~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~ 369 (514)
.........++++++|.++++-.. ++|+.+++
T Consensus 376 ~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 376 EATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred ceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 011246889999999877777544 78887765
No 219
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.23 E-value=2.8e-10 Score=104.27 Aligned_cols=184 Identities=10% Similarity=0.043 Sum_probs=123.5
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccc-cccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCC
Q 010256 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT-HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYM 362 (514)
Q Consensus 284 ~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 362 (514)
.+..+++++.. .++++|+.+ .+++|++........ ....++ ......+.. |+.++| ++.+|+++.++
T Consensus 39 ~~nlLais~~~-gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~-------~~~~~~lp~-V~~l~f--d~~~L~v~~~~ 106 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGS-KAVVGELQLLRDHITSDSTPLT-------FKWEKEIPD-VIFVCF--HGDQVLVSTRN 106 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCC-------CSEEEECTT-EEEEEE--ETTEEEEEESS
T ss_pred cccEEEEcCCC-CEEEEeCCC-EEEEEEhhHhhhhhcccccccc-------ceEEeeCCC-eeEEEE--CCCEEEEEcCC
Confidence 68899999998 788888887 556699865431000 000010 011223445 999999 89999999779
Q ss_pred eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCc
Q 010256 363 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKN 442 (514)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 442 (514)
.|++||+.. .........+... +.++.+.+. .+++++.||.|.+||++++... .+..
T Consensus 107 ~l~v~dv~s-l~~~~~~~~~~~~---------------v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~-----~~~~ 163 (388)
T 1xip_A 107 ALYSLDLEE-LSEFRTVTSFEKP---------------VFQLKNVNN--TLVILNSVNDLSALDLRTKSTK-----QLAQ 163 (388)
T ss_dssp EEEEEESSS-TTCEEEEEECSSC---------------EEEEEECSS--EEEEEETTSEEEEEETTTCCEE-----EEEE
T ss_pred cEEEEEchh-hhccCccceeecc---------------eeeEEecCC--CEEEEECCCCEEEEEccCCccc-----cccC
Confidence 999999986 4444444444322 225555543 3888899999999999976432 1456
Q ss_pred ceeEEEECCCCCceeecCCCCeEEEe--eCCCCC-ccccCC-ccc----ccccceEEEEEcCCCCEEEEE
Q 010256 443 PMRRQVQTPSRPSRPLGSLSGVVRRV--KGADNS-ALDANG-NAF----DFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 443 ~v~~~~~~~~~~~l~s~s~d~~v~i~--~~~~~~-~~~~~~-~~~----~~~~~v~~~~~spd~~~l~~~ 504 (514)
.|++++|+|+| ++.|..||.++++ ++.... +.++.. ..+ ++...|.++.|.+++.++++=
T Consensus 164 ~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 164 NVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 89999999999 6778889999993 232210 111111 111 267899999999999999864
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.22 E-value=1.7e-08 Score=91.97 Aligned_cols=224 Identities=12% Similarity=0.009 Sum_probs=134.4
Q ss_pred eEEEEECCCCC-EEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 236 INSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 236 v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
..+..|+|++. ++++. .++.|..||.+++... .+ . ....+.++.++|++ +++++ +. ..|.+||..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~------~---~~~~v~~i~~~~dg-~l~v~-~~-~gl~~~d~~ 117 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VH------A---LPFMGSALAKISDS-KQLIA-SD-DGLFLRDTA 117 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE------E---CSSCEEEEEEEETT-EEEEE-ET-TEEEEEETT
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EE------E---CCCcceEEEEeCCC-eEEEE-EC-CCEEEEECC
Confidence 46788999855 45555 7899999999854321 11 1 23568999999998 66664 44 459999988
Q ss_pred CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-----CeEEEEEccCCCCceeeeeeccccccc
Q 010256 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-----MTLKLWDINMDSGPVATFQVHEHLRPK 388 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-----~~i~iwd~~~~~~~~~~~~~~~~~~~~ 388 (514)
+++.. .+..... ......+.+++++|+|+++++... ....||.+.. ++.. .+......
T Consensus 118 ~g~~~-----~~~~~~~-------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~-g~~~-~~~~~~~~--- 180 (326)
T 2ghs_A 118 TGVLT-----LHAELES-------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-GKVT-KLFADISI--- 180 (326)
T ss_dssp TCCEE-----EEECSST-------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-TEEE-EEEEEESS---
T ss_pred CCcEE-----EEeeCCC-------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeC-CcEE-EeeCCCcc---
Confidence 77631 1111000 001135889999999998776431 2334444432 4322 22211111
Q ss_pred cccccccCCccceeeEEEcCCCCEEEEE-eCCCcEEEEecC--CC-ce----eeeeecCCCcceeEEEECCCCCceeecC
Q 010256 389 LCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCS--EG-SA----ESTTLEASKNPMRRQVQTPSRPSRPLGS 460 (514)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~--~~-~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~s 460 (514)
...++|+|||+.|+.+ +.++.|.+|++. ++ .. ....+.........+++.+++.+.++..
T Consensus 181 ------------~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~ 248 (326)
T 2ghs_A 181 ------------PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW 248 (326)
T ss_dssp ------------EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE
T ss_pred ------------cCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe
Confidence 1278999999876544 557899999985 44 21 1122233345567899999998877766
Q ss_pred CCCeEEEeeCCCCCccccCCcccccccceEEEEEc-CCCCEEEEEe
Q 010256 461 LSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWH-PSENSIACAA 505 (514)
Q Consensus 461 ~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s-pd~~~l~~~~ 505 (514)
.++.|.+++-... ...........+++++|+ ||++.|.+++
T Consensus 249 ~~~~v~~~d~~g~----~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 249 GEGAVDRYDTDGN----HIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp TTTEEEEECTTCC----EEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred CCCEEEEECCCCC----EEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 6666766332110 000111124578999998 9988776554
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.21 E-value=7.2e-10 Score=112.12 Aligned_cols=237 Identities=11% Similarity=0.095 Sum_probs=143.4
Q ss_pred cCccCeEEEEECCCCCEEEEe------cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC
Q 010256 231 AHDYHINSISNNSDGETFISA------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK 304 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d 304 (514)
+|...+..++|||||++|+.+ +..+|++||+.+++.... .+. ......++|+ |+ +.|+.++.+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-------~~~--~~k~~~~~Ws-Dg-~~l~y~~~~ 194 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-------PLK--DVKFSGISWL-GN-EGFFYSSYD 194 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-------EEE--EEESCCCEEE-TT-TEEEEEESS
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-------ccC--CceeccEEEe-CC-CEEEEEEec
Confidence 455678889999999999854 235799999997764321 111 1112467899 98 777777776
Q ss_pred C-------------eEEEEEcCCCccccccccceeccCCCCccceeec-cccceeEEEEecCCCEEEEE-e---C-CeEE
Q 010256 305 G-------------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFARNGRHILSR-D---Y-MTLK 365 (514)
Q Consensus 305 g-------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~~-~---~-~~i~ 365 (514)
. .|++|++.+...... ..+.. .. |...+.++.|+|||++|+.. . . ..|+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--~v~~~----------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~ 262 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDR--LVFGA----------IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLY 262 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCE--EEESC----------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEE
T ss_pred CcccccccccCCCcEEEEEECCCCcccce--EEEec----------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEE
Confidence 3 489999877653211 11111 11 22356789999999988753 2 2 5899
Q ss_pred EEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE-eCC---CcEEEEecCCCcee-eeeecCC
Q 010256 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYS---NLFRVFGCSEGSAE-STTLEAS 440 (514)
Q Consensus 366 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~d---g~i~iwd~~~~~~~-~~~~~~~ 440 (514)
++|+..+......+..+.... ... |+++|..|+.. ..+ +.|..+++.++... ...+..|
T Consensus 263 ~~d~~~~~~~~~~l~~~~~~~---------------~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 326 (693)
T 3iuj_A 263 VKDLSQENAPLLTVQGDLDAD---------------VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE 326 (693)
T ss_dssp EEETTSTTCCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred EEECCCCCCceEEEeCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC
Confidence 999986333455555443321 123 66676665544 333 67999999876431 1345556
Q ss_pred CcceeEEEECCCCCceeecCC-CCe--EEEee--CCCCCccccCCcccccccceEEEEEcCCCCEEEEEec-----CcEE
Q 010256 441 KNPMRRQVQTPSRPSRPLGSL-SGV--VRRVK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-----NSLY 510 (514)
Q Consensus 441 ~~~v~~~~~~~~~~~l~s~s~-d~~--v~i~~--~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~-----~~~~ 510 (514)
...+. .++++++.|+.... ++. +++++ +.... .+ .+.....+..+.++|+++.|+.... ..++
T Consensus 327 ~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~--~l---~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~ 399 (693)
T 3iuj_A 327 RQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVR--EV---ALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLY 399 (693)
T ss_dssp CSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEE--EE---CCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEE
T ss_pred CCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeE--Ee---ecCCCceEEeeecCCCCCEEEEEecCCCCCCEEE
Confidence 55554 88888888776654 443 44422 22111 11 1123456778888999888775432 4555
Q ss_pred EEe
Q 010256 511 MYY 513 (514)
Q Consensus 511 i~~ 513 (514)
.|.
T Consensus 400 ~~d 402 (693)
T 3iuj_A 400 RFE 402 (693)
T ss_dssp EEC
T ss_pred EEE
Confidence 553
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.15 E-value=1.5e-08 Score=92.63 Aligned_cols=257 Identities=9% Similarity=0.010 Sum_probs=143.2
Q ss_pred EEEEeeCCCCcEEEEee----------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 117 ~i~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
.+.+ ++++++++++. .++.|.+||+.+++............. .....+..++++|||+.+
T Consensus 69 ~i~~--spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~--------~~g~~P~~ia~SpDGk~l 138 (368)
T 1mda_H 69 LAVA--GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF--------SVGPRVHIIGNCASSACL 138 (368)
T ss_dssp EEEE--CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC--------CBSCCTTSEEECTTSSCE
T ss_pred ceEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc--------ccCCCcceEEEcCCCCEE
Confidence 6788 67888888875 478999999999988777654310000 000112388999999988
Q ss_pred ccccCCCCCCcccCCCC--CCcEEe--ceeeccccccccccccccccccCccCeEEEEECCCCCE-EEEe-cCCeEEEEe
Q 010256 187 ERNFGCASNDSSFPPGG--VSSLRL--PVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET-FISA-DDLRINLWN 260 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~--~~~i~i--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~-~d~~i~iwd 260 (514)
+++.. ...+.+ +| .... ..+..+. . +.+.|+++. +++. .|+.+.+.|
T Consensus 139 ------------yVan~~~~~~v~V~~iD-~~tv---------~~i~v~~---~--~~~~p~g~~~~~~~~~dg~~~~vd 191 (368)
T 1mda_H 139 ------------LFFLFGSSAAAGLSVPG-ASDD---------QLTKSAS---C--FHIHPGAAATHYLGSCPASLAASD 191 (368)
T ss_dssp ------------EEEECSSSCEEEEEETT-TEEE---------EEEECSS---C--CCCEEEETTEEECCCCTTSCEEEE
T ss_pred ------------EEEccCCCCeEEEEEEc-hhhc---------eEEECCC---c--eEEccCCCeEEEEEcCCCCEEEEE
Confidence 55543 456777 77 2220 0100000 0 112344432 3333 677777788
Q ss_pred ccC----CCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccce
Q 010256 261 LEI----SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF 336 (514)
Q Consensus 261 ~~~----~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (514)
+++ ......... ..+.-...+. . .+++ ..++..+. +.+.+.|+.+..... ...+...... ...
T Consensus 192 ~~~~~~~~~~v~~~~t---~~i~vg~~P~---~-~~~~-~~~~~vs~-~~V~viD~~~~~~~v--~~~~~~~~~~--~~~ 258 (368)
T 1mda_H 192 LAAAPAAAGIVGAQCT---GAQNCSSQAA---Q-ANYP-GMLVWAVA-SSILQGDIPAAGATM--KAAIDGNESG--RKA 258 (368)
T ss_dssp CCSSCCCCEECCCCSC---TTSCBCSCCE---E-ETTT-TEEEECBS-SCCEEEECCSSCCEE--ECCCCSSCTH--HHH
T ss_pred CccccccCCeEEEEee---eeeeCCCCcc---c-cccC-CEEEEEcC-CEEEEEECCCCcceE--EEEEEecccc--ccc
Confidence 775 222110000 0111122333 3 6666 45555556 899999986532110 1111110000 000
Q ss_pred eeccccceeEEEEecCCCEEEEE-e-C--------CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE
Q 010256 337 FTEIIASISDIKFARNGRHILSR-D-Y--------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (514)
Q Consensus 337 ~~~~~~~i~~~~~s~~g~~l~~~-~-~--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (514)
..........++++|+++.++.+ . . ..+.++|+.+ .+.+.++....... .++|
T Consensus 259 ~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~~p~----------------gi~~ 321 (368)
T 1mda_H 259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDSD----------------AIIA 321 (368)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEEC----------------EEEE
T ss_pred cccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCCCcc----------------eEEE
Confidence 00000122236899999888763 2 2 2566999998 88888776655332 8999
Q ss_pred cCCCC-EEEEEe-CCCcEEEEecCCCceeeeeecCCC
Q 010256 407 SGDGG-RVATGS-YSNLFRVFGCSEGSAESTTLEASK 441 (514)
Q Consensus 407 s~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~ 441 (514)
+|||+ ++++.. .++.|.++|+.+++. ..++....
T Consensus 322 s~Dg~~l~va~~~~~~~VsVID~~t~kv-v~~I~vg~ 357 (368)
T 1mda_H 322 AQDGASDNYANSAGTEVLDIYDAASDQD-QSSVELDK 357 (368)
T ss_dssp CCSSSCEEEEEETTTTEEEEEESSSCEE-EEECCCCS
T ss_pred CCCCCEEEEEccCCCCeEEEEECCCCcE-EEEEECCC
Confidence 99998 455666 589999999998743 35555443
No 223
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.13 E-value=6.8e-08 Score=88.78 Aligned_cols=169 Identities=16% Similarity=0.183 Sum_probs=90.8
Q ss_pred EEEECCCCCEEEEec--------------------CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEE--ecCCC
Q 010256 238 SISNNSDGETFISAD--------------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHC 295 (514)
Q Consensus 238 ~~~~~~~~~~l~s~~--------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~--~p~~~ 295 (514)
.+.|+|+++.+++++ +.+|.+||+.+.+ ....++ +.........+.| +|++
T Consensus 192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k-~~~tI~-----vg~~g~~P~~i~f~~~Pdg- 264 (462)
T 2ece_A 192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK-RIHSLT-----LGEENRMALELRPLHDPTK- 264 (462)
T ss_dssp CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE-EEEEEE-----SCTTEEEEEEEEECSSTTC-
T ss_pred eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc-EeeEEe-----cCCCCCccceeEeeECCCC-
Confidence 456677777777663 7899999998653 333221 1111233456666 9999
Q ss_pred cEEEEEe------cCCeEEEEEcCCCccccccccceeccCCC--Ccc----ceeeccccceeEEEEecCCCEEEEEeC--
Q 010256 296 NMLAYSS------SKGSIRLIDMRQSALCDTHSKLFEEQEAP--GTR----SFFTEIIASISDIKFARNGRHILSRDY-- 361 (514)
Q Consensus 296 ~~l~~~~------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~i~~~~~s~~g~~l~~~~~-- 361 (514)
+++++++ .+++|.+|....+... ..+.++....+ ... .-+.+-......+.+||||++|+++..
T Consensus 265 ~~aYV~~e~~~~~Lss~V~v~~~d~g~~~--~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~ 342 (462)
T 2ece_A 265 LMGFINMVVSLKDLSSSIWLWFYEDGKWN--AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI 342 (462)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEEETTEEE--EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT
T ss_pred CEEEEEEeeeccCCCceEEEEEecCCcee--EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC
Confidence 5555554 5678888777654321 12222111100 000 000011235788999999999998753
Q ss_pred CeEEEEEccCCCC--ceeeeeeccccccccccccccCCc-cceeeEEEcCCCCEEEEEe
Q 010256 362 MTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSI-FDKFECCLSGDGGRVATGS 417 (514)
Q Consensus 362 ~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~ 417 (514)
+.|.+||+...++ .+..+...... ...... ....+ ..=..++++|||++|+++.
T Consensus 343 d~VavfdV~d~~~~~lv~~I~tGG~~-~~~~~~-~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 343 GEVRQYDISNPFKPVLTGKVKLGGIF-HRADHP-AGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TEEEEEECSSTTSCEEEEEEECBTTT-TCBCCT-TSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CEEEEEEecCCCCcEEEEEEEeCCee-cccccc-ccccCCCCCCEEEEcCCCCEEEEEc
Confidence 8999999864332 23333222100 000000 00000 0001789999999998887
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.12 E-value=1.8e-08 Score=92.64 Aligned_cols=254 Identities=7% Similarity=-0.049 Sum_probs=148.3
Q ss_pred cCeEEEEECCCCCEEEEe---cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec-----CC
Q 010256 234 YHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-----KG 305 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-----dg 305 (514)
..+..++++++|+++++. .++.++||.+.+ .......... .....+...+.++++++++ +++++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~~~~~p~~~-~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-DGLIPFPPQS-GNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-TEEEESCCCC-SSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-CCeecCCCcc-cCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCC
Confidence 578899999999999985 245356666652 2222110000 1122355679999999998 66665443 57
Q ss_pred eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEE-EEEe----CCeEEEEEccCCCCceeeee
Q 010256 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI-LSRD----YMTLKLWDINMDSGPVATFQ 380 (514)
Q Consensus 306 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~~~----~~~i~iwd~~~~~~~~~~~~ 380 (514)
.|.+||+.+++.. +.+...... ..+...+..+++++++..+ ++.. ++.|.+||+.. ++....+.
T Consensus 94 ~i~~~d~~tg~~~----~~~~~~~~~------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~-g~~~r~~~ 162 (343)
T 2qe8_A 94 KLVAWDTLNNQLS----RVIYLPPPI------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT-GLAARVLQ 162 (343)
T ss_dssp EEEEEETTTTEEE----EEEECCTTT------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT-CCEEEECT
T ss_pred eEEEEECCCCeEE----EEEECChhh------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC-CCEEEEec
Confidence 9999999988752 233321110 1122456889999865454 4433 38999999986 65555443
Q ss_pred eccccccc-----cc--ccc---ccCC----ccceeeEEEcCCCCEEEEEeCCC-cEEEEecC---CCc----eee--ee
Q 010256 381 VHEHLRPK-----LC--DLY---ENDS----IFDKFECCLSGDGGRVATGSYSN-LFRVFGCS---EGS----AES--TT 436 (514)
Q Consensus 381 ~~~~~~~~-----~~--~~~---~~~~----~~~v~~~~~s~~~~~l~s~~~dg-~i~iwd~~---~~~----~~~--~~ 436 (514)
.|...... .. .++ .... ......++|+|||+.|+.+..++ .++.++.. .+. ... ..
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 242 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE 242 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE
Confidence 32211110 00 000 0000 01245799999999888877665 55555432 110 000 01
Q ss_pred ecCCCcceeEEEECCCCCceeecCCCCeEEEeeC--CCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 437 LEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG--ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 437 ~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~--~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
..++......+++.+++.++++...++.|.+++. .+.. .+.. .........+++.++++++++.+
T Consensus 243 ~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~--~~~~--~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 243 RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK--LLVT--DEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE--EEEE--CGGGSCEEEEEECTTSCEEEEEC
T ss_pred ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE--EEEE--CCceecCCeeEECCCCcEEEEeC
Confidence 2233445667999999999999988898888443 1111 0110 11245688999999998877765
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.10 E-value=6.5e-08 Score=96.96 Aligned_cols=200 Identities=9% Similarity=0.088 Sum_probs=116.7
Q ss_pred EEEEECCCCCEEEEe-cCC-------------------eEEEEeccCCCceeeeeccCCCccc--ccCCceEEEEEecCC
Q 010256 237 NSISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANME--DLTEVITSAEFHPTH 294 (514)
Q Consensus 237 ~~~~~~~~~~~l~s~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~v~~~p~~ 294 (514)
..++++|++..++.+ .++ .|..+|.++++...... ..+...- .......-+....+|
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~-~~~~d~wd~~~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ-ETPGDNWDYTSTQPMILADIKIAG 324 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE-SSTTCCSCCCCCSCCEEEEEEETT
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEe-cCCCcccccccCCCcEEEecccCC
Confidence 367889988888877 543 59999999887665431 1110000 001222333444465
Q ss_pred C--cEEEEEecCCeEEEEEcCCCccccccccc-------eeccCCCC----------ccceee---ccccceeEEEEecC
Q 010256 295 C--NMLAYSSSKGSIRLIDMRQSALCDTHSKL-------FEEQEAPG----------TRSFFT---EIIASISDIKFARN 352 (514)
Q Consensus 295 ~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-------~~~~~~~~----------~~~~~~---~~~~~i~~~~~s~~ 352 (514)
. ..++.++.+|.+.++|.++++.+...... ++....+. ...... +.. .-..++++|+
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~-~w~~~a~dp~ 403 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH-NWHPMSFNPQ 403 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS-CSSCCEEETT
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccccc-CCCCceEcCC
Confidence 2 47888999999999999999875331100 00000000 000000 000 1135788998
Q ss_pred CCEEEEEe--------------------------------------------CCeEEEEEccCCCCceeeeeeccccccc
Q 010256 353 GRHILSRD--------------------------------------------YMTLKLWDINMDSGPVATFQVHEHLRPK 388 (514)
Q Consensus 353 g~~l~~~~--------------------------------------------~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 388 (514)
+.++++.. .+.|..||+.+ ++.+-.+......
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~~~--- 479 (677)
T 1kb0_A 404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEHVSPW--- 479 (677)
T ss_dssp TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEESSSC---
T ss_pred CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecCCCCCC---
Confidence 88777631 16788999987 7766665533211
Q ss_pred cccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec-CCCcceeEEEECCCCCce
Q 010256 389 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-ASKNPMRRQVQTPSRPSR 456 (514)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l 456 (514)
....+..++.+++.++.||.+++||..+++.+ ..+. ++......+.+.++|+.+
T Consensus 480 -------------~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l-w~~~~~~~~~~~p~~y~~~G~~~ 534 (677)
T 1kb0_A 480 -------------NGGTLTTAGNVVFQGTADGRLVAYHAATGEKL-WEAPTGTGVVAAPSTYMVDGRQY 534 (677)
T ss_dssp -------------CCCEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEETTEEE
T ss_pred -------------cCcceEeCCCEEEEECCCCcEEEEECCCCcee-eeeeCCCCcccCCEEEEeCCEEE
Confidence 14456678888999999999999999998654 4443 332233345566676543
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.06 E-value=9.7e-08 Score=95.91 Aligned_cols=198 Identities=12% Similarity=0.068 Sum_probs=115.2
Q ss_pred EEEECCCCCEEEEe-cCC-------------------eEEEEeccCCCceeeeeccCCCcccc--cCCceEEEEEecCCC
Q 010256 238 SISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANMED--LTEVITSAEFHPTHC 295 (514)
Q Consensus 238 ~~~~~~~~~~l~s~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~v~~~p~~~ 295 (514)
.++++|++.+++.+ .++ .|..+|.++++...... ..+..... ....+.......+|.
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~-~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQ-TTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEE-SSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeee-cCCcccccccCCCCcEEEeeccCCc
Confidence 57888988888888 665 49999999887665431 11100000 112222223333551
Q ss_pred --cEEEEEecCCeEEEEEcCCCcccccccc---ceecc----C--------------CCCccceeeccc--cceeEEEEe
Q 010256 296 --NMLAYSSSKGSIRLIDMRQSALCDTHSK---LFEEQ----E--------------APGTRSFFTEII--ASISDIKFA 350 (514)
Q Consensus 296 --~~l~~~~~dg~i~~wd~~~~~~~~~~~~---~~~~~----~--------------~~~~~~~~~~~~--~~i~~~~~s 350 (514)
..++.++.+|.++++|.++++.+..... .+... . .........+.. ..-..++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 2788899999999999999987522100 00000 0 000000000000 012347888
Q ss_pred cCCCEEEEEe----------------------------------------------CCeEEEEEccCCCCceeeeeeccc
Q 010256 351 RNGRHILSRD----------------------------------------------YMTLKLWDINMDSGPVATFQVHEH 384 (514)
Q Consensus 351 ~~g~~l~~~~----------------------------------------------~~~i~iwd~~~~~~~~~~~~~~~~ 384 (514)
|+..++++.. ++.|..||+.+ ++.+-.+..+..
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~~ 476 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYVTI 476 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEESSS
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCCCC
Confidence 8877777631 26688899887 777666655432
Q ss_pred cccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC-CcceeEEEECCCCC
Q 010256 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRP 454 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~ 454 (514)
.. .-.+...+.+++.++.||.|+.||.++++.+ ..++.. ......+.+..+|+
T Consensus 477 ~~----------------~g~~~tagglvf~gt~dg~l~a~D~~tG~~l-w~~~~~~~~~~~p~ty~~~G~ 530 (689)
T 1yiq_A 477 FN----------------GGTLSTAGNLVFEGSADGRVIAYAADTGEKL-WEQPAASGVMAAPVTYSVDGE 530 (689)
T ss_dssp CC----------------CCEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEETTE
T ss_pred cc----------------CccceECCCEEEEECCCCcEEEEECCCCccc-eeeeCCCCcccCceEEEECCE
Confidence 21 3355667889999999999999999999654 344432 22223456666666
No 227
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.98 E-value=2.3e-05 Score=80.69 Aligned_cols=385 Identities=10% Similarity=0.031 Sum_probs=206.7
Q ss_pred eEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeE
Q 010256 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (514)
Q Consensus 38 V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (514)
|.++...++|.+.+ |+.++-|..|+..+++.. ... ...+. ..|.+
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~---------------------~~~-~~~~~------------~~i~~ 219 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFE---------------------KVI-PILGT------------KQIQA 219 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEE---------------------ECC-----C------------CCEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEE---------------------Eec-CCCCC------------CeeEE
Confidence 88998888886555 555444888887655421 000 00011 45777
Q ss_pred EEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCc
Q 010256 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (514)
Q Consensus 118 i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (514)
+.. ..++ .+..++.++-+.+||..+++......... ....+....|. ++...++|...
T Consensus 220 i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~-~~~~l~~~~i~-------~i~~d~~g~lW----------- 277 (795)
T 4a2l_A 220 ILQ--QSPT-RIWVATEGAGLFLINPKTKEIKNYLHSPS-NPKSISSNYIR-------SLAMDSQNRLW----------- 277 (795)
T ss_dssp EEE--EETT-EEEEEEBSSCEEEEETTTTEEEEECCCTT-CTTSCSCSBEE-------EEEECTTSCEE-----------
T ss_pred EEE--cCCC-CEEEEECCCCeEEEeCCCCeEEEeecCCC-CccccCCCeEE-------EEEEcCCCCEE-----------
Confidence 776 3444 45556655558899998877554322110 01111223333 55556666653
Q ss_pred ccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCc
Q 010256 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAN 277 (514)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~ 277 (514)
.++.. -|.+|+ ..................-....|.++...++|.+-+...++-|..|+..+... ..+...+..
T Consensus 278 --igt~~-Gl~~~~-~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~ 351 (795)
T 4a2l_A 278 --IGTFN-DLNIYH-EGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRF--KNIRNIPYK 351 (795)
T ss_dssp --EEESS-CEEEEE-TTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSS--EEECCCTTS
T ss_pred --EEeCC-hhheEc-CCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccc--eEEcCCCCC
Confidence 33333 466555 111110000000000001234679999999999877666767788888764321 111111100
Q ss_pred ccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccC-CCCccceeeccccceeEEEEecCCCEE
Q 010256 278 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE-APGTRSFFTEIIASISDIKFARNGRHI 356 (514)
Q Consensus 278 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~g~~l 356 (514)
-.-....|.++...++| + |-.|+.++-|..||..++... .+.... .+. ..+ ....|.++...++|+.|
T Consensus 352 ~~l~~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~~~~~~~-----~~~~~~~~~~--~~l--~~~~v~~i~~d~~g~~l 420 (795)
T 4a2l_A 352 NSLSDNVVSCIVEDKDK-N-LWIGTNDGGLNLYNPITQRFT-----SYTLQEDESA--RGI--GSNNIKAVYVDEKKSLV 420 (795)
T ss_dssp SSCSCSSEEEEEECTTS-C-EEEEESSSCEEEECTTTCCEE-----EECCC--------CC--SCSCEEEEEEETTTTEE
T ss_pred CCCCCCeeEEEEECCCC-C-EEEEECCCCeEEEcCCCCcEE-----EEecCCCCcc--cCC--CCccEEEEEEcCCCCEE
Confidence 01124568999998887 4 555888888999998765421 111100 000 000 12468999999999844
Q ss_pred EEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeee
Q 010256 357 LSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAEST 435 (514)
Q Consensus 357 ~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 435 (514)
..|. ++.|.+||..+ ++ ...+...... .... .|.++...++|++.+.. . +.+.+||..++.....
T Consensus 421 Wigt~~~Gl~~~d~~~-~~-~~~~~~~~~~-------l~~~---~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~ 486 (795)
T 4a2l_A 421 YIGTHAGGLSILHRNS-GQ-VENFNQRNSQ-------LVNE---NVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTI 486 (795)
T ss_dssp EEEETTTEEEEEETTT-CC-EEEECTTTSC-------CSCS---CEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEEC
T ss_pred EEEeCcCceeEEeCCC-Cc-EEEeecCCCC-------cCCC---eeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEc
Confidence 4444 47799999875 33 3333211000 0011 24578888888866544 4 4588999876533211
Q ss_pred ee-----cCCCcceeEEEECCCCCceeecCCCCeEEE-eeCCCCCccccC-CcccccccceEEEEEcCCCCEEEEEecCc
Q 010256 436 TL-----EASKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDAN-GNAFDFSMKLLHLAWHPSENSIACAASNS 508 (514)
Q Consensus 436 ~~-----~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i-~~~~~~~~~~~~-~~~~~~~~~v~~~~~spd~~~l~~~~~~~ 508 (514)
.. .-....|.++...+++.+.+... .|-.++ ..+... ..... ....-....|.++...++|++.+ ++.++
T Consensus 487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~G 563 (795)
T 4a2l_A 487 EKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWV-GTREG 563 (795)
T ss_dssp CBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEE-EESSC
T ss_pred cccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEE-EeCCC
Confidence 11 11235688898998888766555 665555 222221 10000 00111346789999999998554 44458
Q ss_pred EEEEe
Q 010256 509 LYMYY 513 (514)
Q Consensus 509 ~~i~~ 513 (514)
++.|.
T Consensus 564 l~~~d 568 (795)
T 4a2l_A 564 FYCFN 568 (795)
T ss_dssp EEEEE
T ss_pred ceeEC
Confidence 88875
No 228
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.96 E-value=3.7e-07 Score=83.97 Aligned_cols=240 Identities=9% Similarity=-0.028 Sum_probs=132.3
Q ss_pred ccCCCCCCcEEeceeeccccccccccccc--ccc-ccCccCeEEEEECCCCCEEEEe-cC------CeEEEEeccCCCce
Q 010256 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRR--IYA-HAHDYHINSISNNSDGETFISA-DD------LRINLWNLEISNQS 267 (514)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~~~-~~h~~~v~~~~~~~~~~~l~s~-~d------~~i~iwd~~~~~~~ 267 (514)
++.+..++.|.++|+..........+... .+. ..-......+...|+| +++++ .+ +.|.++|.++.+..
T Consensus 99 ~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~ 177 (462)
T 2ece_A 99 IVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPL 177 (462)
T ss_dssp EEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEE
T ss_pred EEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEE
Confidence 36677788999998222211111111110 000 0011234567788999 77776 44 78999999876644
Q ss_pred eeeeccCCCccccc-CCceEEEEEecCCCcEEEEEe-------------------cCCeEEEEEcCCCccccccccceec
Q 010256 268 FNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSS-------------------SKGSIRLIDMRQSALCDTHSKLFEE 327 (514)
Q Consensus 268 ~~~~~~~~~~~~~~-~~~i~~v~~~p~~~~~l~~~~-------------------~dg~i~~wd~~~~~~~~~~~~~~~~ 327 (514)
.++ . .... ...-+.+-|+|++ +.+++.. .+.+|.+||+.+++. ..++..
T Consensus 178 ~~~-~-----~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~----~~tI~v 246 (462)
T 2ece_A 178 GKW-E-----IDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR----IHSLTL 246 (462)
T ss_dssp EEC-C-----SBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE----EEEEES
T ss_pred EEE-c-----cCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE----eeEEec
Confidence 332 1 1111 2233468889999 7777764 368999999998754 233332
Q ss_pred cCCCCccceeeccccceeEEEE--ecCCCEEEEE-e-----C-CeEEEEEccCCCCc--eeeeeeccc-ccccccccccc
Q 010256 328 QEAPGTRSFFTEIIASISDIKF--ARNGRHILSR-D-----Y-MTLKLWDINMDSGP--VATFQVHEH-LRPKLCDLYEN 395 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~i~~~~~--s~~g~~l~~~-~-----~-~~i~iwd~~~~~~~--~~~~~~~~~-~~~~~~~~~~~ 395 (514)
.. .......+.| +|++++++.+ . . ++|.+|..+. +.. .+.+..... ....+..+...
T Consensus 247 g~----------~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 247 GE----------ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp CT----------TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred CC----------CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCccccccccccccc
Confidence 10 0023445555 9999988764 3 4 7888877763 321 111111110 00000000000
Q ss_pred -CC-ccceeeEEEcCCCCEEEEEe-CCCcEEEEecCCCc--eeeeeecCCC--------------cceeEEEECCCCCce
Q 010256 396 -DS-IFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGS--AESTTLEASK--------------NPMRRQVQTPSRPSR 456 (514)
Q Consensus 396 -~~-~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~--~~~~~~~~~~--------------~~v~~~~~~~~~~~l 456 (514)
.. -.....+.+|+||++|.++. ..+.|.+||+.... .+...+.... ...+.+.++|||++|
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L 395 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV 395 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence 00 00123799999999988765 46899999986332 2222222110 135789999999988
Q ss_pred eecC
Q 010256 457 PLGS 460 (514)
Q Consensus 457 ~s~s 460 (514)
.++.
T Consensus 396 yVaN 399 (462)
T 2ece_A 396 YVTN 399 (462)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7775
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.96 E-value=7.3e-08 Score=88.16 Aligned_cols=256 Identities=10% Similarity=0.054 Sum_probs=139.1
Q ss_pred EEEEcCCCCeEEEec----------CCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccC-CCccccccc
Q 010256 40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH-EPEFDYLKS 108 (514)
Q Consensus 40 ~~~~s~~g~~l~tg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~ 108 (514)
.++++|||++|+++. .++.|.+||..+.+.. .++... .+.+.
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv-----------------------~~I~v~~~~~~~---- 121 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI-----------------------ADIELPDAPRFS---- 121 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE-----------------------EEEEETTSCSCC----
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE-----------------------EEEECCCccccc----
Confidence 799999999998886 3688999999887743 222111 00000
Q ss_pred cccccceeEEEEeeCCCCcEEEEeeC--CCeEEE--EEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCC
Q 010256 109 LEIEEKINKIRWCQSANSALYLLSTN--DKTIKL--WKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~~--d~~i~i--w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 184 (514)
....-..+.+ ++||++++++.. +..+.+ +|..+ ........ +....|+++
T Consensus 122 --~g~~P~~ia~--SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-------------------~~~~~p~g~ 175 (368)
T 1mda_H 122 --VGPRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-------------------CFHIHPGAA 175 (368)
T ss_dssp --BSCCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-------------------CCCCEEEET
T ss_pred --cCCCcceEEE--cCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-------------------ceEEccCCC
Confidence 0012345677 678888888864 467888 88877 22222210 112234443
Q ss_pred ccccccCCCCCCcccCCCCCCcEEeceeeccc---cccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEe
Q 010256 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQ---ETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWN 260 (514)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~---~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd 260 (514)
.. +++.+.++.+.+.+ +... +..........+ .-...+. . .+++..++.. . +.+.+.|
T Consensus 176 ~~-----------~~~~~~dg~~~~vd-~~~~~~~~~~v~~~~t~~i-~vg~~P~---~-~~~~~~~~~vs~-~~V~viD 237 (368)
T 1mda_H 176 AT-----------HYLGSCPASLAASD-LAAAPAAAGIVGAQCTGAQ-NCSSQAA---Q-ANYPGMLVWAVA-SSILQGD 237 (368)
T ss_dssp TE-----------EECCCCTTSCEEEE-CCSSCCCCEECCCCSCTTS-CBCSCCE---E-ETTTTEEEECBS-SCCEEEE
T ss_pred eE-----------EEEEcCCCCEEEEE-CccccccCCeEEEEeeeee-eCCCCcc---c-cccCCEEEEEcC-CEEEEEE
Confidence 32 13444556555544 2110 000000000011 1112233 3 5555555555 7 9999999
Q ss_pred ccCCCc-eeeeeccCCCcccc---cCCceEEEEEecCCCcEEEEEec---------CCeEEEEEcCCCccccccccceec
Q 010256 261 LEISNQ-SFNIVDVKPANMED---LTEVITSAEFHPTHCNMLAYSSS---------KGSIRLIDMRQSALCDTHSKLFEE 327 (514)
Q Consensus 261 ~~~~~~-~~~~~~~~~~~~~~---~~~~i~~v~~~p~~~~~l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~~~ 327 (514)
...... ....+.+....... .......++++|++ ..++.+.. ++.+.++|+.+.+.. ..+..
T Consensus 238 ~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv----~~i~v 312 (368)
T 1mda_H 238 IPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTS----GPISN 312 (368)
T ss_dssp CCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----ECCEE
T ss_pred CCCCcceEEEEEEeccccccccccccCcceeeEEcCCC-CEEEEEeccccCcccccCCCEEEEECCCCeEE----EEEEC
Confidence 864321 11111110000000 11111226899998 45554332 235669999998763 33332
Q ss_pred cCCCCccceeeccccceeEEEEecCCCE-EEEEe--CCeEEEEEccCCCCceeeeeecccc
Q 010256 328 QEAPGTRSFFTEIIASISDIKFARNGRH-ILSRD--YMTLKLWDINMDSGPVATFQVHEHL 385 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~ 385 (514)
. .....++|+|||+. +++.. ++.|.++|+.+ .+.+.++......
T Consensus 313 g-------------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t-~kvv~~I~vg~~P 359 (368)
T 1mda_H 313 G-------------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKGP 359 (368)
T ss_dssp E-------------EEECEEEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSCC
T ss_pred C-------------CCcceEEECCCCCEEEEEccCCCCeEEEEECCC-CcEEEEEECCCCC
Confidence 2 24788999999984 55554 59999999998 8888888765543
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.95 E-value=1.1e-06 Score=81.81 Aligned_cols=309 Identities=11% Similarity=0.111 Sum_probs=157.6
Q ss_pred CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccccee-EEEEeeCC
Q 010256 46 SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN-KIRWCQSA 124 (514)
Q Consensus 46 ~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~-~i~~~~~~ 124 (514)
++..|++++.++.|..+|..+++.. ....+..... . .. .....+. .+..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~---------------------W~~~~~~~~~---~-~~-~~~~~~~~~~~~---- 101 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEI---------------------WSVSLAEKDG---W-FS-KEPALLSGGVTV---- 101 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEE---------------------EEEECCC------C-CS-CCCCCEEEEEEE----
T ss_pred ECCEEEEEcCCCeEEEEEccCCcee---------------------eeecCccccc---c-cc-ccCcccccCceE----
Confidence 3567888888999999999887742 1111110000 0 00 0001122 2222
Q ss_pred CCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCC
Q 010256 125 NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV 204 (514)
Q Consensus 125 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 204 (514)
++..+++++.++.|..+|..+++........... . ......++ .+ +.++.+
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~---------~-------~~p~~~~~-~v------------~v~~~~ 152 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEA---------L-------SRPVVSDG-LV------------LIHTSN 152 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCC---------C-------SCCEEETT-EE------------EEECTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCce---------E-------cCCEEECC-EE------------EEEcCC
Confidence 2347888899999999999999876655443211 0 00011122 22 555667
Q ss_pred CcEEeceeeccccccccccccccccccCccCe------EEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCc
Q 010256 205 SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHI------NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 277 (514)
Q Consensus 205 ~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v------~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 277 (514)
+.+..+| ..+.+. +..+ .. ...+ ...... +..++.+ .++.+..+|.++++.........+..
T Consensus 153 g~l~~~d-~~tG~~------~W~~-~~-~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~ 221 (376)
T 3q7m_A 153 GQLQALN-EADGAV------KWTV-NL-DMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATG 221 (376)
T ss_dssp SEEEEEE-TTTCCE------EEEE-EC-CC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC---
T ss_pred CeEEEEE-CCCCcE------EEEE-eC-CCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCC
Confidence 7777776 222111 1111 00 0000 111111 3456667 89999999998776654331110000
Q ss_pred c---cccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCC
Q 010256 278 M---EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 354 (514)
Q Consensus 278 ~---~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 354 (514)
. ............. + ..++.++.++.+..+|.++++..+. ... .....+... +.
T Consensus 222 ~~~~~~~~~~~~~p~~~-~--~~v~~~~~~g~l~~~d~~tG~~~w~----~~~--------------~~~~~~~~~--~~ 278 (376)
T 3q7m_A 222 STEIDRLSDVDTTPVVV-N--GVVFALAYNGNLTALDLRSGQIMWK----REL--------------GSVNDFIVD--GN 278 (376)
T ss_dssp --------CCCCCCEEE-T--TEEEEECTTSCEEEEETTTCCEEEE----ECC--------------CCEEEEEEE--TT
T ss_pred CcccccccccCCCcEEE-C--CEEEEEecCcEEEEEECCCCcEEee----ccC--------------CCCCCceEE--CC
Confidence 0 0000000011111 2 4677788899999999999876432 110 123333333 44
Q ss_pred EEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 355 HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 355 ~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
.++.++ ++.|..+|..+ ++.+.......... ...... .+..|+.++.+|.|+.+|..+++.+
T Consensus 279 ~l~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~--------------~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 279 RIYLVDQNDRVMALTIDG-GVTLWTQSDLLHRL--------------LTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV 341 (376)
T ss_dssp EEEEEETTCCEEEEETTT-CCEEEEECTTTTSC--------------CCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEEEcCCCeEEEEECCC-CcEEEeecccCCCc--------------ccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence 555554 58999999987 76655443111100 002222 2567888889999999999988543
Q ss_pred eeeecCCCccee-EEEECCCCCceeecCCCCeEEE
Q 010256 434 STTLEASKNPMR-RQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 434 ~~~~~~~~~~v~-~~~~~~~~~~l~s~s~d~~v~i 467 (514)
...+.....+. .... .+..|..++.+|.+..
T Consensus 342 -~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~ 373 (376)
T 3q7m_A 342 -AQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYS 373 (376)
T ss_dssp -EEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEE
T ss_pred -EEEecCCCcceeCCEE--ECCEEEEEeCCCEEEE
Confidence 33333222221 1122 2345666666776654
No 231
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.94 E-value=4.5e-05 Score=78.52 Aligned_cols=388 Identities=10% Similarity=0.042 Sum_probs=209.8
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
...|.++...++|.+.+....+| |.+|+..+++.. .+. +.+. ....+ ....
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~------------------------~~~-~~~~--~~~~l-~~~~ 264 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIK------------------------NYL-HSPS--NPKSI-SSNY 264 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEE------------------------EEC-CCTT--CTTSC-SCSB
T ss_pred CCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEE------------------------Eee-cCCC--Ccccc-CCCe
Confidence 46788998888886555433344 888987654421 010 0000 00000 0155
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
|.++.. ..+|. |..|+.+ -|.+|+..+++.......... ...+....|. ++...++|..
T Consensus 265 i~~i~~--d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~-------~i~~D~~g~l--------- 323 (795)
T 4a2l_A 265 IRSLAM--DSQNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVE-NGSLSQRSVR-------SIFMDSQGGM--------- 323 (795)
T ss_dssp EEEEEE--CTTSC-EEEEESS-CEEEEETTTTEEEEECCCTTS-TTSCSSSCEE-------EEEECTTSCE---------
T ss_pred EEEEEE--cCCCC-EEEEeCC-hhheEcCCCCeEEEEecCCCC-CCCCCCCcEE-------EEEEeCCcCE---------
Confidence 888887 55664 4455555 588999888876544322111 1112223343 5566666664
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccC
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVK 274 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~ 274 (514)
..|+.++-|..++ ......... ........-....|.++...++|.+.+...++-|..|+..+.... .. ...
T Consensus 324 ----Wigt~~~Gl~~~~-~~~~~~~~~-~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~-~~-~~~ 395 (795)
T 4a2l_A 324 ----WLGTYFGGLNYYH-PIRNRFKNI-RNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFT-SY-TLQ 395 (795)
T ss_dssp ----EEEESSSCEEEEC-GGGGSSEEE-CCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEE-EE-CCC
T ss_pred ----EEEECCCCeEEeC-CCcccceEE-cCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEE-EE-ecC
Confidence 4455556666655 111110000 000000011245699999999998776557777899998744321 11 000
Q ss_pred CCcc--cccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC
Q 010256 275 PANM--EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (514)
Q Consensus 275 ~~~~--~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 352 (514)
+... .-....|.++...+++ ++|..|+.++-|.+||..+++.. .+.... + ......|.++...++
T Consensus 396 ~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~~~~~-----~~~~~~-~------~l~~~~v~~i~~d~~ 462 (795)
T 4a2l_A 396 EDESARGIGSNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNSGQVE-----NFNQRN-S------QLVNENVYAILPDGE 462 (795)
T ss_dssp ------CCSCSCEEEEEEETTT-TEEEEEETTTEEEEEETTTCCEE-----EECTTT-S------CCSCSCEEEEEECSS
T ss_pred CCCcccCCCCccEEEEEEcCCC-CEEEEEeCcCceeEEeCCCCcEE-----EeecCC-C------CcCCCeeEEEEECCC
Confidence 0000 0124578999998888 64666888788999998876531 121100 0 011246899999988
Q ss_pred CCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCce
Q 010256 353 GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (514)
Q Consensus 353 g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 432 (514)
|.+.++.. +.+.+||..+ ++ ...+...... .. ... ..|.++...++|++.+... +.|..||..++..
T Consensus 463 g~lwigt~-~Gl~~~~~~~-~~-~~~~~~~~~~-~~----~~~---~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 463 GNLWLGTL-SALVRFNPEQ-RS-FTTIEKEKDG-TP----VVS---KQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI 529 (795)
T ss_dssp SCEEEEES-SCEEEEETTT-TE-EEECCBCTTC-CB----CCC---CCEEEEEECTTCCEEEEES--SCEEEEEEETTEE
T ss_pred CCEEEEec-CceeEEeCCC-Ce-EEEccccccc-cc----cCC---ceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE
Confidence 88777655 5688898764 32 2222111000 00 000 1244788888898766443 5688899876533
Q ss_pred eeeeec-------CCCcceeEEEECCCCCceeecCCCCeEEEe-eCCCCCccccCCcccccccceEEEEEcCCCCEEEEE
Q 010256 433 ESTTLE-------ASKNPMRRQVQTPSRPSRPLGSLSGVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 433 ~~~~~~-------~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~-~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~ 504 (514)
.+. .....|.++...+++.+.+.... |-.++- ....... +....--....|.++...++|++.+ +
T Consensus 530 ---~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~--~~~~~gl~~~~i~~i~~d~~g~lWi-~ 602 (795)
T 4a2l_A 530 ---QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKR--YNTTNGLPNNVVYGILEDSFGRLWL-S 602 (795)
T ss_dssp ---EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEE--ECGGGTCSCSCEEEEEECTTSCEEE-E
T ss_pred ---EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEE--eCCCCCCchhheEEEEECCCCCEEE-E
Confidence 111 23356888888888886655543 655551 1111110 0000000134688899988887544 4
Q ss_pred ecCcEEEEe
Q 010256 505 ASNSLYMYY 513 (514)
Q Consensus 505 ~~~~~~i~~ 513 (514)
+.+++..|.
T Consensus 603 t~~Gl~~~~ 611 (795)
T 4a2l_A 603 TNRGISCFN 611 (795)
T ss_dssp ETTEEEEEE
T ss_pred cCCceEEEc
Confidence 467887764
No 232
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.87 E-value=1e-05 Score=71.13 Aligned_cols=176 Identities=10% Similarity=0.025 Sum_probs=102.0
Q ss_pred CeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec--CCeEEEE
Q 010256 235 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLI 310 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~--dg~i~~w 310 (514)
....+++++++..|..+ ..+.|.+++++... ...+. .........++++|+++.++++... .+.|..+
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~-------~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~ 151 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLF-------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS 151 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE-------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEE-------ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence 45789999976555554 67899999987332 21111 1112457899999975344444433 4688888
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeeccccccc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPK 388 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~ 388 (514)
++..... ..+.. ........++++|++..|+.++. +.|.++|... ......+.....
T Consensus 152 ~~dg~~~-----~~~~~-----------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~~~~---- 210 (267)
T 1npe_A 152 HMDGTNR-----RILAQ-----------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEGLQY---- 210 (267)
T ss_dssp ETTSCCC-----EEEEC-----------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEECCCS----
T ss_pred ecCCCCc-----EEEEE-----------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEecCCCC----
Confidence 8754321 11110 01135788999998887776543 8999999874 222222111100
Q ss_pred cccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCC-cceeEEEECCCC
Q 010256 389 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTPSR 453 (514)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~ 453 (514)
-..++.. ++.++++....+.|..+|..+++.. .++.... .....+++.|++
T Consensus 211 ------------P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~-~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 211 ------------PFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM-DTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp ------------EEEEEEE-TTEEEEEETTTTEEEEEETTTTEEE-EEECCSSCCCCCCEEEECSC
T ss_pred ------------ceEEEEe-CCEEEEEECCCCeEEEEeCCCCCce-EEEccccccccceeeecCcc
Confidence 1155554 3444444446689999999887443 4444332 245677777763
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.85 E-value=2.9e-09 Score=98.68 Aligned_cols=144 Identities=8% Similarity=0.024 Sum_probs=70.2
Q ss_pred CCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccc
Q 010256 243 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 321 (514)
Q Consensus 243 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 321 (514)
.++..++++ .|+.|+.||.++++..... ........ ...++ +. .+ ..+++++.++.++.||.++|+..+.
T Consensus 47 ~~g~~~v~~s~dg~l~a~d~~tG~~~w~~-~~~~~~~~-~~sp~----~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~- 117 (369)
T 2hz6_A 47 VEEPAFLPDPNDGSLYTLGSKNNEGLTKL-PFTIPELV-QASPC----RS-SD-GILYMGKKQDIWYVIDLLTGEKQQT- 117 (369)
T ss_dssp ---CCEEECTTTCCEEEC-----CCSEEC-SCCHHHHH-TTCSC----C-------CCCCEEEEEEEEECCC--------
T ss_pred cCCCEEEEeCCCCEEEEEECCCCceeeee-eccCcccc-ccCce----Ee-cC-CEEEEEeCCCEEEEEECCCCcEEEE-
Confidence 446666776 8999999999876654321 00000000 01111 11 23 4677888899999999999987432
Q ss_pred ccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccc
Q 010256 322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 400 (514)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
+..+ . ...++|++..+++++ ++.|+.||.++ ++.+..+......
T Consensus 118 ---~~~~-------------~---~~~~~p~~~~v~~~~~dg~v~a~d~~t-G~~~W~~~~~~~~--------------- 162 (369)
T 2hz6_A 118 ---LSSA-------------F---ADSLSPSTSLLYLGRTEYTITMYDTKT-RELRWNATYFDYA--------------- 162 (369)
T ss_dssp ----------------------------------EEEEEEEEEEECCCSSS-SSCCCEEEEEEEC---------------
T ss_pred ---ecCC-------------C---cccccccCCEEEEEecCCEEEEEECCC-CCEEEeEeccccc---------------
Confidence 1111 0 134556777777765 49999999987 7766655433211
Q ss_pred eeeEEEcCCC---CEEEEEeCCCcEEEEecCCCce
Q 010256 401 KFECCLSGDG---GRVATGSYSNLFRVFGCSEGSA 432 (514)
Q Consensus 401 v~~~~~s~~~---~~l~s~~~dg~i~iwd~~~~~~ 432 (514)
..+++++. ..+++++.||.|+.||..+++.
T Consensus 163 --~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 163 --ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp --CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred --CccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 23333332 4566788999999999998854
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.84 E-value=7.5e-08 Score=87.95 Aligned_cols=183 Identities=10% Similarity=0.130 Sum_probs=113.0
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
..+.++...+++.+++...++.|..+|.. ++..... ......+.++...+++ .++ .++ +.+..+| .
T Consensus 137 ~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~--------~~~~~~~~~~~~d~~g-~l~-v~t--~~l~~~d-~ 202 (330)
T 3hxj_A 137 AIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRF--------KTNDAITSAASIGKDG-TIY-FGS--DKVYAIN-P 202 (330)
T ss_dssp CCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEE--------ECSSCCCSCCEECTTC-CEE-EES--SSEEEEC-T
T ss_pred ceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEE--------ecCCCceeeeEEcCCC-EEE-EEe--CEEEEEC-C
Confidence 34556677778876665578999999987 5443322 1123445666777777 544 455 8888999 5
Q ss_pred CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeecccccccccccc
Q 010256 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 393 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
+++.... +.. ....+.++...++|.+.++..++.|..+|.. ++.+..+........
T Consensus 203 ~g~~~~~----~~~------------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~--g~~~~~~~~~~~~~~------ 258 (330)
T 3hxj_A 203 DGTEKWN----FYA------------GYWTVTRPAISEDGTIYVTSLDGHLYAINPD--GTEKWRFKTGKRIES------ 258 (330)
T ss_dssp TSCEEEE----ECC------------SSCCCSCCEECTTSCEEEEETTTEEEEECTT--SCEEEEEECSSCCCS------
T ss_pred CCcEEEE----Ecc------------CCcceeceEECCCCeEEEEcCCCeEEEECCC--CCEeEEeeCCCCccc------
Confidence 6554211 111 1135777888888877766666788888743 555554443322111
Q ss_pred ccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 394 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 394 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+.+.++++ |..++.+|.|..+|. +++. ...+......+.++...+++++ ..++.+|.+++
T Consensus 259 ---------~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~-~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G~~~~ 319 (330)
T 3hxj_A 259 ---------SPVIGNTDT-IYFGSYDGHLYAINP-DGTE-KWNFETGSWIIATPVIDENGTI-YFGTRNGKFYA 319 (330)
T ss_dssp ---------CCEECTTSC-EEEECTTCEEEEECT-TSCE-EEEEECSSCCCSCCEECTTCCE-EEECTTSCEEE
T ss_pred ---------cceEcCCCe-EEEecCCCCEEEECC-CCcE-EEEEEcCCccccceEEcCCCEE-EEEcCCCeEEE
Confidence 455555665 556778889999996 4433 3344444455667777777764 45778888888
No 235
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.84 E-value=9.6e-07 Score=88.70 Aligned_cols=335 Identities=10% Similarity=0.035 Sum_probs=171.7
Q ss_pred cEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCc
Q 010256 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (514)
Q Consensus 127 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (514)
..+++++.++.|..+|..+|+..-............ ..+.......+. ..+..+ +.++.++.
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~----~~~~~~~~~~~~--~~~g~v------------~v~~~dg~ 132 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAG----EACCDAVNRGVA--VWKGKV------------YVGVLDGR 132 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGG----GCTTCSCCCCCE--EETTEE------------EEECTTSE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccc----cccccCCCCccE--EECCEE------------EEEccCCE
Confidence 467778888999999999998777665442211000 000000000111 122333 66667788
Q ss_pred EEeceeecccccccccccccccccc-CccCeEEEEECC---CCCEEEEec------CCeEEEEeccCCCceeeeecc--C
Q 010256 207 LRLPVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNS---DGETFISAD------DLRINLWNLEISNQSFNIVDV--K 274 (514)
Q Consensus 207 i~i~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~---~~~~l~s~~------d~~i~iwd~~~~~~~~~~~~~--~ 274 (514)
+..+| ..+.+. +..+... +......+..+| ++..++... ++.|+.||.++++...+.... .
T Consensus 133 l~AlD-a~TG~~------~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~ 205 (689)
T 1yiq_A 133 LEAID-AKTGQR------AWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGD 205 (689)
T ss_dssp EEEEE-TTTCCE------EEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC
T ss_pred EEEEE-CCCCCE------eeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCC
Confidence 88777 222111 1111010 100001111112 444444322 689999999988876554211 0
Q ss_pred CC-c------------cc--------ccCCceEEEEEecCCCcEEEEEecCCe-------------------EEEEEcCC
Q 010256 275 PA-N------------ME--------DLTEVITSAEFHPTHCNMLAYSSSKGS-------------------IRLIDMRQ 314 (514)
Q Consensus 275 ~~-~------------~~--------~~~~~i~~v~~~p~~~~~l~~~~~dg~-------------------i~~wd~~~ 314 (514)
+. . .. +.......++++|+. .+++.++.++. |..+|.++
T Consensus 206 p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T 284 (689)
T 1yiq_A 206 PKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT 284 (689)
T ss_dssp TTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT
T ss_pred cccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC
Confidence 00 0 00 111112367889987 78888887764 99999999
Q ss_pred CccccccccceeccCCCCccceeeccccceeEEEEecCCC---EEEEEeC-CeEEEEEccCCCCceeeeeecccc-cccc
Q 010256 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR---HILSRDY-MTLKLWDINMDSGPVATFQVHEHL-RPKL 389 (514)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~---~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~-~~~~ 389 (514)
++..+..... .+... -+. ....+.-.....+|+ .++.++. |.++++|..+ ++++......... ...+
T Consensus 285 G~~~W~~~~~--~~d~w----d~~-~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~ 356 (689)
T 1yiq_A 285 GEYVWHYQTT--PGDAW----DYT-ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRAT-GELLSAKGIVPQSWTKGM 356 (689)
T ss_dssp CCEEEEEESS--TTCCS----CCC-CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEE
T ss_pred CceeEeeecC--Ccccc----ccc-CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCC-CCEecccccccccccccc
Confidence 9875432110 00000 000 001222223333565 6667665 9999999997 8776443322100 0000
Q ss_pred c----------c-c--cccCC----------ccceeeEEEcCCCCEEEEEeC----------------------------
Q 010256 390 C----------D-L--YENDS----------IFDKFECCLSGDGGRVATGSY---------------------------- 418 (514)
Q Consensus 390 ~----------~-~--~~~~~----------~~~v~~~~~s~~~~~l~s~~~---------------------------- 418 (514)
. . . +.... ...-..++|+|+..++++...
T Consensus 357 ~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 436 (689)
T 1yiq_A 357 DMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRT 436 (689)
T ss_dssp ETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEE
T ss_pred CccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccc
Confidence 0 0 0 00000 000114789999888776532
Q ss_pred -----------------CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEee---CCCCCcccc
Q 010256 419 -----------------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK---GADNSALDA 478 (514)
Q Consensus 419 -----------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~---~~~~~~~~~ 478 (514)
+|.|+.||+.+++. .-.++.+. ++..-.+...+.+++.++.|+.++.++ |..+++..+
T Consensus 437 ~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~-~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 437 GMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA-AWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp CCCCSSHHHHHHHHTTCEEEEEEEETTTTEE-EEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cccCcccccCCCCCCCcceeEEEEECCCCCe-EeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 37799999999843 34444333 233335556778899999999999943 444432222
Q ss_pred CCcccccccceEEEEEcCCCCEEE
Q 010256 479 NGNAFDFSMKLLHLAWHPSENSIA 502 (514)
Q Consensus 479 ~~~~~~~~~~v~~~~~spd~~~l~ 502 (514)
. ....-.-+.|..||+..+
T Consensus 515 ~-----~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 515 A-----SGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp S-----SCCCSCCEEEEETTEEEE
T ss_pred C-----CCcccCceEEEECCEEEE
Confidence 1 122224467788988554
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.75 E-value=1.4e-06 Score=87.27 Aligned_cols=78 Identities=9% Similarity=0.021 Sum_probs=52.8
Q ss_pred CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeecc
Q 010256 305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHE 383 (514)
Q Consensus 305 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~ 383 (514)
|.|..||+.+++..++. +. ..++....+...+..++.++ ++.+++||.++ ++.+..+....
T Consensus 457 g~l~A~D~~tG~~~W~~----~~-------------~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t-G~~lw~~~~~~ 518 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSV----EH-------------VSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT-GEKLWEAPTGT 518 (677)
T ss_dssp EEEEEEETTTTEEEEEE----EE-------------SSSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECSS
T ss_pred cEEEEEeCCCCcEEeec----CC-------------CCCCcCcceEeCCCEEEEECCCCcEEEEECCC-CceeeeeeCCC
Confidence 77999999998865431 11 12344455667777888775 49999999998 99988887654
Q ss_pred ccccccccccccCCccceeeEEEcCCCCEEE
Q 010256 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVA 414 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 414 (514)
.... .-+.|..+|+.++
T Consensus 519 ~~~~--------------~p~~y~~~G~~~v 535 (677)
T 1kb0_A 519 GVVA--------------APSTYMVDGRQYV 535 (677)
T ss_dssp CCCS--------------CCEEEEETTEEEE
T ss_pred Cccc--------------CCEEEEeCCEEEE
Confidence 3221 1466778887544
No 237
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=0.00016 Score=74.38 Aligned_cols=393 Identities=10% Similarity=0.001 Sum_probs=201.1
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
...|.++...++|.+. .|+..+-|.+++..+.+... +.. +.+..+..... . ..+ ....
T Consensus 257 ~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~-----~~~--------~~f~~~~~~~~-~------~~l-~~~~ 314 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLW-IATELNGIMILDLQQNQFLL-----PEQ--------IRFEFIREGDN-N------YSL-SNAS 314 (781)
T ss_dssp CCCEEEEEECTTSEEE-EEESSSCEEEEETTCC----------------------CEEECBCSS-T------TSB-SSSC
T ss_pred CceEEEEEECCCCCEE-EEeCCCCeEEECCCCCeeee-----eec--------cccccccCCCC-C------CCC-CCCe
Confidence 3579999998888654 45553458888876554210 000 00000000000 0 000 0156
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccC-CCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNV-HPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
|.++.. ..+| .|-.|+.++-|..++...+.......... .....+....|. ++...++|..
T Consensus 315 v~~i~~--D~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-------~i~~d~~g~l-------- 376 (781)
T 3v9f_A 315 ARYIFQ--DSFN-NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS-------SVCDDGQGKL-------- 376 (781)
T ss_dssp EEEEEE--CSSC-CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE-------EEEECTTSCE--------
T ss_pred EEEEEE--eCCC-CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE-------EEEEcCCCCE--------
Confidence 888877 5555 46677777888889887665433221100 001111122333 4455555554
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeecc
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
..|+.++-|..++ ......... ... .......|.++...+++.+.+...++-|..++..+++.. .. .
T Consensus 377 -----Wigt~~~Gl~~~~-~~~~~~~~~---~~~-~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~-~- 443 (781)
T 3v9f_A 377 -----WIGTDGGGINVFE-NGKRVAIYN---KEN-RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ-II-E- 443 (781)
T ss_dssp -----EEEEBSSCEEEEE-TTEEEEECC---------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE-EC-C-
T ss_pred -----EEEeCCCcEEEEE-CCCCeEEEc---cCC-CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE-Ee-c-
Confidence 4455455566665 211100000 000 012346789999988888777556677888988644321 11 0
Q ss_pred CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 274 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
.. ......|.++...+++ . |..|+. +.+..||..+++.. .+...... ......|.++...++|
T Consensus 444 -~~--~~~~~~v~~i~~d~~g-~-lwigt~-~Gl~~~~~~~~~~~-----~~~~~~~~------~~~~~~i~~i~~d~~g 506 (781)
T 3v9f_A 444 -LE--KNELLDVRVFYEDKNK-K-IWIGTH-AGVFVIDLASKKVI-----HHYDTSNS------QLLENFVRSIAQDSEG 506 (781)
T ss_dssp -ST--TTCCCCEEEEEECTTS-E-EEEEET-TEEEEEESSSSSCC-----EEECTTTS------SCSCSCEEEEEECTTC
T ss_pred -cC--CCCCCeEEEEEECCCC-C-EEEEEC-CceEEEeCCCCeEE-----ecccCccc------ccccceeEEEEEcCCC
Confidence 00 1134678999888887 4 444555 56888998775431 11111000 0012568999999999
Q ss_pred CEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 354 RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 354 ~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
.+.++...+-|..||... .....+...... ... .|.++...++|++.++. .+|.+..||..+++..
T Consensus 507 ~lWigt~~~Gl~~~~~~~--~~~~~~~~~~~l--------~~~---~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~ 572 (781)
T 3v9f_A 507 RFWIGTFGGGVGIYTPDM--QLVRKFNQYEGF--------CSN---TINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQ 572 (781)
T ss_dssp CEEEEESSSCEEEECTTC--CEEEEECTTTTC--------SCS---CEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCE
T ss_pred CEEEEEcCCCEEEEeCCC--CeEEEccCCCCC--------CCC---eeEEEEECCCCCEEEEE-CCCceEEECCCCCcEE
Confidence 887776544577788763 233333221111 011 24478888888866544 4665588888765322
Q ss_pred eeee-cC-CCcceeEEEECCCCCceeecCCCCeEEEee-CCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEE
Q 010256 434 STTL-EA-SKNPMRRQVQTPSRPSRPLGSLSGVVRRVK-GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 510 (514)
Q Consensus 434 ~~~~-~~-~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~-~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~ 510 (514)
.... .+ ....+.++...++|.+.+++ .+|..++-. ...........-.....-...++...++|+ |..|+.+++.
T Consensus 573 ~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~-l~~g~~~Gl~ 650 (781)
T 3v9f_A 573 VFQRKEGLPNTHIRAISEDKNGNIWAST-NTGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGL-IYFGSINGLC 650 (781)
T ss_dssp EECGGGTCSCCCCCEEEECSSSCEEEEC-SSCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSC-EEEEETTEEE
T ss_pred EccccCCCCCceEEEEEECCCCCEEEEc-CCceEEEECCCCceEEecccCCccccccccCceEECCCCE-EEEECCCceE
Confidence 1111 11 12357788888888766654 567666611 111100000000000111234667778887 5556667777
Q ss_pred EEe
Q 010256 511 MYY 513 (514)
Q Consensus 511 i~~ 513 (514)
.|+
T Consensus 651 ~f~ 653 (781)
T 3v9f_A 651 FFN 653 (781)
T ss_dssp EEC
T ss_pred EEC
Confidence 764
No 238
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.70 E-value=0.00027 Score=72.62 Aligned_cols=396 Identities=10% Similarity=0.002 Sum_probs=199.9
Q ss_pred cceEEEEEcC--CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 36 DIISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 36 ~~V~~~~~s~--~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
..|.++.... +|.+. .++.++-|..|+..+++.. .+..... ..+. ..
T Consensus 115 ~~i~~i~~d~~~~g~lw-i~t~~~gl~~~~~~~~~~~------------------------~~~~~~~-----~~l~-~~ 163 (781)
T 3v9f_A 115 NDVTHITSSVQAGKGLW-VCTYYRGIEYLDIATGKFT------------------------HYNKSTV-----PALP-SE 163 (781)
T ss_dssp SCEEEEEECSSTTSEEE-EEESSSCEEEEETTTTEEE------------------------EESTTTC-----TTCS-CC
T ss_pred CcceEEEecCccCCCEE-EEECCCCeeEEECCCCeEE------------------------eeccCcc-----cCCC-cc
Confidence 4688998887 77544 4553445888887654421 0100000 0000 14
Q ss_pred ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
.|.++.. ..++ .|..++.++-+..||..+++..........+ ..+....+. .+...++|...
T Consensus 164 ~i~~i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~-------~i~~d~~g~lw------- 225 (781)
T 3v9f_A 164 QTWTATE--AEDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNP-NSLPGNDVR-------CIYKDTNGNIW------- 225 (781)
T ss_dssp CEEEEEE--EETT-EEEEEETTTEEEEEETTTTEEEEECC---------CCSSEE-------EEEECTTCCEE-------
T ss_pred ceEEEEE--CCCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCc-ccCCCCcee-------EEEEcCCCCEE-------
Confidence 4777766 3344 4556776667889998887654432111000 011112232 44455555543
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeec-
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD- 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~- 272 (514)
.++.. -+.+|+ .......................|.++...++|.+.+....+-|.++|..+.... ....
T Consensus 226 ------igt~~-Gl~~~d-~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~ 296 (781)
T 3v9f_A 226 ------IGTSK-GLALFN-ANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFL-LPEQI 296 (781)
T ss_dssp ------EEETT-EEEEEE-TTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------
T ss_pred ------EEeCC-cHheEC-CCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeee-eeecc
Confidence 33333 466565 1111100000000000011235689999988887666555456888888744321 1100
Q ss_pred ------cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 273 ------VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 273 ------~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
.......-....|.++...++| . |-.|+.++-|..++..+... ..+.......... .-....|.+
T Consensus 297 ~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~-lWigt~~~Gl~~~~~~~~~~-----~~~~~~~~~~~~~--~l~~~~v~~ 367 (781)
T 3v9f_A 297 RFEFIREGDNNYSLSNASARYIFQDSFN-N-IWIGTWGGGINFISNAPPTF-----HTWSYSPTQMNES--SLSNKVVSS 367 (781)
T ss_dssp -CEEECBCSSTTSBSSSCEEEEEECSSC-C-EEEEEBSSCEEEECSSCCSC-----EEEC----CCCSS--CCSSSCEEE
T ss_pred ccccccCCCCCCCCCCCeEEEEEEeCCC-C-EEEEecCCeEEEeCCCCCcc-----eeeccCccccccC--CCCCcceEE
Confidence 0000011234678999998887 4 55577778888888765442 1111100000000 001246899
Q ss_pred EEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEe
Q 010256 347 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (514)
Q Consensus 347 ~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 426 (514)
+...++|.+.+...++-|..||..+ +. ...+...... .-..|.++...++|++.+ |+.++.|..++
T Consensus 368 i~~d~~g~lWigt~~~Gl~~~~~~~-~~-~~~~~~~~~~-----------~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~ 433 (781)
T 3v9f_A 368 VCDDGQGKLWIGTDGGGINVFENGK-RV-AIYNKENREL-----------LSNSVLCSLKDSEGNLWF-GTYLGNISYYN 433 (781)
T ss_dssp EEECTTSCEEEEEBSSCEEEEETTE-EE-EECC-----C-----------CCSBEEEEEECTTSCEEE-EETTEEEEEEC
T ss_pred EEEcCCCCEEEEeCCCcEEEEECCC-Ce-EEEccCCCCC-----------CCcceEEEEECCCCCEEE-EeccCCEEEEc
Confidence 9998888877665456688888764 21 1111100000 001245788887887655 66667799999
Q ss_pred cCCCceeeeee-cCCCcceeEEEECCCCCceeecCCCCeEEE-eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEE
Q 010256 427 CSEGSAESTTL-EASKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 427 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i-~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~ 504 (514)
..+++...... ......|.++...+++.+.+... .|-.++ ..+..................|.++...++|++.+..
T Consensus 434 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt 512 (781)
T 3v9f_A 434 TRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT 512 (781)
T ss_dssp SSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE
T ss_pred CCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE
Confidence 87663221111 12345788888888887665544 554444 1121111100000000114678999999999866655
Q ss_pred ecCcEEEEe
Q 010256 505 ASNSLYMYY 513 (514)
Q Consensus 505 ~~~~~~i~~ 513 (514)
..++++.|.
T Consensus 513 ~~~Gl~~~~ 521 (781)
T 3v9f_A 513 FGGGVGIYT 521 (781)
T ss_dssp SSSCEEEEC
T ss_pred cCCCEEEEe
Confidence 457887764
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.69 E-value=8e-07 Score=84.77 Aligned_cols=191 Identities=8% Similarity=0.055 Sum_probs=106.5
Q ss_pred CCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC--------------
Q 010256 242 NSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-------------- 305 (514)
Q Consensus 242 ~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg-------------- 305 (514)
.+||+.|..+ .++.+.+.|.++.+...++. .. .....++++|+| .++++.+.+.
T Consensus 161 ~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~------Vg---g~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~ 230 (595)
T 1fwx_A 161 VNDGTNMEDVANYVNVFTAVDADKWEVAWQVL------VS---GNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEM 230 (595)
T ss_dssp SCSSSSTTCGGGEEEEEEEEETTTTEEEEEEE------ES---SCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSE
T ss_pred CCCCcccccccccCceEEEEECCCCeEEEEEE------eC---CCccceEECCCC-CEEEEEecCcccCcchhhcccccc
Confidence 3444444444 46678888887654443321 11 123557788888 6666666542
Q ss_pred -eEEEEEcCCCccc--------cccccceeccCC--CCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCC
Q 010256 306 -SIRLIDMRQSALC--------DTHSKLFEEQEA--PGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMD 372 (514)
Q Consensus 306 -~i~~wd~~~~~~~--------~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~ 372 (514)
.|.+.|....... ...+..++.... ......+.. .....++.++|||+++++++. .+|.++|+.+
T Consensus 231 d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~- 308 (595)
T 1fwx_A 231 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR- 308 (595)
T ss_dssp EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG-
T ss_pred ceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcc-
Confidence 3555554322100 001222222210 000011111 124677999999999998653 8999999985
Q ss_pred CC------------ceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC---------c
Q 010256 373 SG------------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG---------S 431 (514)
Q Consensus 373 ~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---------~ 431 (514)
.+ ....+....+ -..++|+|+|...++.-.|+.|.+||+... .
T Consensus 309 ~~~~~~~~l~~~~~v~~~v~vG~g----------------P~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~ 372 (595)
T 1fwx_A 309 FDAVFYENADPRSAVVAEPELGLG----------------PLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVD 372 (595)
T ss_dssp HHHHHHSCCCGGGGEEECCBCCSC----------------EEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCC
T ss_pred cccccccccCcccceEEEcCCCCC----------------cceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccc
Confidence 21 1111111111 126899999954556678999999998762 1
Q ss_pred eeeeeecCCCcce-----eEEEECCCCCceeecC
Q 010256 432 AESTTLEASKNPM-----RRQVQTPSRPSRPLGS 460 (514)
Q Consensus 432 ~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~s 460 (514)
....++..|..+- .....+|||++|++..
T Consensus 373 ~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 373 PIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp CEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred eeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 3345666665542 2234589999988763
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.69 E-value=1.7e-06 Score=78.86 Aligned_cols=211 Identities=10% Similarity=0.041 Sum_probs=119.6
Q ss_pred CCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccc
Q 010256 245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 323 (514)
Q Consensus 245 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 323 (514)
+..+..+ .++.|..+|.+ ++..... ......+.++...+++ . +..++.++.|..+|.. ++...
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~--------~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~~~~---- 170 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRF--------KTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GTEKW---- 170 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEE--------ECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SCEEE----
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEE--------cCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CCEeE----
Confidence 3445556 78999999987 5443322 1123335556667676 4 6668888999999988 65422
Q ss_pred ceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceee
Q 010256 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
.+... ...+.++.+.+++.+.++. +.|..+| .+ ++.+......... +.+
T Consensus 171 ~~~~~------------~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~-g~~~~~~~~~~~~---------------~~~ 219 (330)
T 3hxj_A 171 RFKTN------------DAITSAASIGKDGTIYFGS--DKVYAIN-PD-GTEKWNFYAGYWT---------------VTR 219 (330)
T ss_dssp EEECS------------SCCCSCCEECTTCCEEEES--SSEEEEC-TT-SCEEEEECCSSCC---------------CSC
T ss_pred EEecC------------CCceeeeEEcCCCEEEEEe--CEEEEEC-CC-CcEEEEEccCCcc---------------eec
Confidence 11111 1346667777788766655 7899999 44 5555444332211 226
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccc
Q 010256 404 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF 483 (514)
Q Consensus 404 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~ 483 (514)
+...++|.+. .++.++.|..++.. +... ..+......+..+...+++. |..++.++.+..++.... ... ...
T Consensus 220 ~~~~~~g~l~-v~t~~~gl~~~~~~-g~~~-~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~~g~---~~~-~~~ 291 (330)
T 3hxj_A 220 PAISEDGTIY-VTSLDGHLYAINPD-GTEK-WRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINPDGT---EKW-NFE 291 (330)
T ss_dssp CEECTTSCEE-EEETTTEEEEECTT-SCEE-EEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECTTSC---EEE-EEE
T ss_pred eEECCCCeEE-EEcCCCeEEEECCC-CCEe-EEeeCCCCccccceEcCCCe-EEEecCCCCEEEECCCCc---EEE-EEE
Confidence 7788887654 46667888888753 4332 33333333344555655554 555666766666332100 000 000
Q ss_pred ccccceEEEEEcCCCCEEEEEecCcEEE
Q 010256 484 DFSMKLLHLAWHPSENSIACAASNSLYM 511 (514)
Q Consensus 484 ~~~~~v~~~~~spd~~~l~~~~~~~~~i 511 (514)
.....+.++...+++++.+ ++.++++.
T Consensus 292 ~~~~~~~~~~~d~~g~l~~-gt~~G~~~ 318 (330)
T 3hxj_A 292 TGSWIIATPVIDENGTIYF-GTRNGKFY 318 (330)
T ss_dssp CSSCCCSCCEECTTCCEEE-ECTTSCEE
T ss_pred cCCccccceEEcCCCEEEE-EcCCCeEE
Confidence 1234567777778887555 55444443
No 241
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.68 E-value=2.7e-05 Score=77.99 Aligned_cols=178 Identities=15% Similarity=0.180 Sum_probs=101.5
Q ss_pred EEEECCCCCEEEEe-cCC-------------------eEEEEeccCCCceeeeeccCCCccc--ccCCceEEEEEecCCC
Q 010256 238 SISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANME--DLTEVITSAEFHPTHC 295 (514)
Q Consensus 238 ~~~~~~~~~~l~s~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~v~~~p~~~ 295 (514)
.++++|+...+..+ .++ .|..+|.++++...+.. ..+.... ....++....+..++.
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~-~~~~~~wd~~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ-VTPGDSWDFTATQQITLAELNIDGK 312 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE-SSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee-cCCCccccccCCCCcEEEEeccCCc
Confidence 57888888888777 555 49999999887665431 1000000 0112333333444651
Q ss_pred --cEEEEEecCCeEEEEEcCCCcccccccc-------ceeccCC-C----C------ccceeecccc--ceeEEEEecCC
Q 010256 296 --NMLAYSSSKGSIRLIDMRQSALCDTHSK-------LFEEQEA-P----G------TRSFFTEIIA--SISDIKFARNG 353 (514)
Q Consensus 296 --~~l~~~~~dg~i~~wd~~~~~~~~~~~~-------~~~~~~~-~----~------~~~~~~~~~~--~i~~~~~s~~g 353 (514)
..++.++.+|.+.++|..+++.+..... .++.... + . ......+..+ .-..++++|+.
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 2688899999999999999987522100 0000000 0 0 0000000000 01236777776
Q ss_pred CEEEEE------------------------------------eC-CeEEEEEccCCCCceeeeeeccccccccccccccC
Q 010256 354 RHILSR------------------------------------DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND 396 (514)
Q Consensus 354 ~~l~~~------------------------------------~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (514)
..++.. .. +.|..||+.+ ++.+-.........
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~~~~~---------- 461 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYPTHWN---------- 461 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEESSSCC----------
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCCCCCc----------
Confidence 665531 12 6788899887 77665555432211
Q ss_pred CccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 397 SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 397 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
...+...+.+++.++.||.++.||.++++.+
T Consensus 462 ------~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 462 ------GGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp ------CCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ------CceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 3344557888999999999999999998544
No 242
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.64 E-value=1.1e-05 Score=69.46 Aligned_cols=210 Identities=7% Similarity=-0.011 Sum_probs=128.4
Q ss_pred ccccc--ceEEEEEcCCCCeEEEecC--CCeEEEEEecCCcccCCcccccccccccccCCccceeeeee--ccCCCcccc
Q 010256 32 VQEVD--IISAIEFDKSGDHLATGDR--GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF--QSHEPEFDY 105 (514)
Q Consensus 32 ~~h~~--~V~~~~~s~~g~~l~tg~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~ 105 (514)
++|.. ....++|+||+.++++.+. ++.|.+.|+.+++.. ..+ ..+
T Consensus 15 ~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~-----------------------~~i~l~~~------ 65 (266)
T 2iwa_A 15 FPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVE-----------------------NIHKMDDS------ 65 (266)
T ss_dssp EECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEE-----------------------EEEECCTT------
T ss_pred EECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEE-----------------------EEEecCCC------
Confidence 34543 4689999998755544432 579999999988753 121 111
Q ss_pred ccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 106 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
.-...+++ .. +...++.-.++.+.++|..+.+....+... .+. ....++||+.
T Consensus 66 -------~fgeGi~~--~g-~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~----------------g~glt~Dg~~ 118 (266)
T 2iwa_A 66 -------YFGEGLTL--LN-EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD----------------GWGLATDGKI 118 (266)
T ss_dssp -------CCEEEEEE--ET-TEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS----------------CCEEEECSSS
T ss_pred -------cceEEEEE--eC-CEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC----------------eEEEEECCCE
Confidence 11223444 22 344455567899999999998877765543 111 4456778887
Q ss_pred cccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccc-cCccCeEEEEECCCCCEEEEe-cCCeEEEEeccC
Q 010256 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAH-AHDYHINSISNNSDGETFISA-DDLRINLWNLEI 263 (514)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 263 (514)
+ +++..++.+.+.| ..+.+. ......-.. ..-..++.+.|. ++..++.. .++.|.+.|..+
T Consensus 119 l------------~vs~gs~~l~viD-~~t~~v---~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~t 181 (266)
T 2iwa_A 119 L------------YGSDGTSILYEID-PHTFKL---IKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKD 181 (266)
T ss_dssp E------------EEECSSSEEEEEC-TTTCCE---EEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTT
T ss_pred E------------EEECCCCeEEEEE-CCCCcE---EEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCC
Confidence 7 5555678888877 222111 111111000 011246778888 77666666 789999999997
Q ss_pred CCceeeeeccCCC------cccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCC
Q 010256 264 SNQSFNIVDVKPA------NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (514)
Q Consensus 264 ~~~~~~~~~~~~~------~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 315 (514)
++.. ..+++... .-.........|+|+|++..+++++...+.+...++...
T Consensus 182 g~V~-~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 182 GTLL-GWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp CCEE-EEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CcEE-EEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 6644 33322100 000112467899999998678888888899998888654
No 243
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.63 E-value=2.4e-05 Score=70.85 Aligned_cols=155 Identities=9% Similarity=0.019 Sum_probs=88.3
Q ss_pred eEEEEECC-CCCEEEEe-c-----------------CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCc
Q 010256 236 INSISNNS-DGETFISA-D-----------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN 296 (514)
Q Consensus 236 v~~~~~~~-~~~~l~s~-~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 296 (514)
...+++.+ +|++.++- . ++.|..||..+++.. .+ .........++++|++ +
T Consensus 128 p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~-~~--------~~~~~~p~gia~~~dg-~ 197 (322)
T 2fp8_A 128 LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT-LL--------LKELHVPGGAEVSADS-S 197 (322)
T ss_dssp EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE-EE--------EEEESCCCEEEECTTS-S
T ss_pred cceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE-Ee--------ccCCccCcceEECCCC-C
Confidence 45566777 66665553 2 366778887643321 11 0111234679999998 6
Q ss_pred EE-EEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-e----------CCeE
Q 010256 297 ML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D----------YMTL 364 (514)
Q Consensus 297 ~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~----------~~~i 364 (514)
.| ++-+..+.|..|++.....- ....+.. ..+ ...+++.++|.+.++. . .+.|
T Consensus 198 ~lyv~d~~~~~I~~~~~~~~~~~--~~~~~~~------------~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v 262 (322)
T 2fp8_A 198 FVLVAEFLSHQIVKYWLEGPKKG--TAEVLVK------------IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKG 262 (322)
T ss_dssp EEEEEEGGGTEEEEEESSSTTTT--CEEEEEE------------CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEE
T ss_pred EEEEEeCCCCeEEEEECCCCcCC--ccceEEe------------CCC-CCCeEECCCCCEEEEecCcccccccCCCccEE
Confidence 44 44456789999998753210 0111110 112 6778999999877764 2 2456
Q ss_pred EEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 365 KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 365 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
..+|.. ++.+..+....+.. ...+..+++ .+++++++....+.|..+++..
T Consensus 263 ~~~d~~--G~~~~~~~~~~g~~-----------~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 263 IKFDEF--GNILEVIPLPPPFA-----------GEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEECTT--SCEEEEEECCTTTT-----------TSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEECCC--CCEEEEEECCCCCc-----------cccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 667653 66666665433210 011225665 4666666666778899998864
No 244
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.61 E-value=2e-06 Score=82.08 Aligned_cols=261 Identities=9% Similarity=0.027 Sum_probs=145.4
Q ss_pred CCCCeEEEecC-CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeC
Q 010256 45 KSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS 123 (514)
Q Consensus 45 ~~g~~l~tg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~ 123 (514)
+||++|..... +++|.+.|+.+.+... ..++.. ......+++..-
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~---------------------ii~ip~-------------g~~phg~~~~~~ 144 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDA---------------------ILEIPN-------------AKGIHGLRPQKW 144 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEE---------------------EEECSS-------------CCSEEEEEECCS
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEee---------------------EEeCCC-------------CCCCcceeeeec
Confidence 38888877664 5679999998776420 001111 133566666312
Q ss_pred CCCcEEEEee------------------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 124 ANSALYLLST------------------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 124 ~~~~~l~s~~------------------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
++++++++++ .++.+.+.|..+.+..........+. .++.+|+|+.
T Consensus 145 p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd----------------~~~~spdGk~ 208 (595)
T 1fwx_A 145 PRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLD----------------NCDADYEGKW 208 (595)
T ss_dssp SBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCC----------------CEEECSSSSE
T ss_pred CCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCcc----------------ceEECCCCCE
Confidence 6677877774 34689999999988777666543222 6677888877
Q ss_pred cccccCCCCCC-cc--cCCCC-----------------------CCcEEeceeeccccccccccc-cccccccCccCeEE
Q 010256 186 GERNFGCASND-SS--FPPGG-----------------------VSSLRLPVVVTSQETNLVAGC-RRIYAHAHDYHINS 238 (514)
Q Consensus 186 l~~~~~~~~~~-~~--~~~~~-----------------------~~~i~i~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~ 238 (514)
+....-..... .+ .+... -+.+.+.| ..... ... .... .-.....+
T Consensus 209 ~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID-~~~~~----~~~~~~~I--pvg~~PhG 281 (595)
T 1fwx_A 209 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVD-GRKEA----SSLFTRYI--PIANNPHG 281 (595)
T ss_dssp EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEE-CSGGG----CCSSEEEE--EEESSCCC
T ss_pred EEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEe-CcccC----CceeEEEE--ecCCCceE
Confidence 62221111000 00 00000 02244444 11100 000 0010 01124567
Q ss_pred EEECCCCCEEEEe--cCCeEEEEeccCCCceee-eeccCC---CcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 239 ISNNSDGETFISA--DDLRINLWNLEISNQSFN-IVDVKP---ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 239 ~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~-~~~~~~---~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
+.++|||++++++ .+.+|.++|+.+.+.... .++... ... .-......++|+|+| ...++.-.|+.|..||+
T Consensus 282 v~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 282 CNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp EEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTS-EEEEEETTTTEEEEEEH
T ss_pred EEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCC-eEEEEEecCCcEEEEEh
Confidence 9999999988876 699999999985421100 000000 011 124567899999999 77788888999999999
Q ss_pred CCCc------cccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC---CeE-----------EEEEccC
Q 010256 313 RQSA------LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---MTL-----------KLWDINM 371 (514)
Q Consensus 313 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---~~i-----------~iwd~~~ 371 (514)
.+.. .....+..++.+.. .+|...-..+.++|||++|++... .++ .++|+..
T Consensus 360 ~~a~~~~~g~~~~~vi~kidV~yq-------pGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~ 431 (595)
T 1fwx_A 360 EDAIRAYAGEKVDPIKDKLDVHYQ-------PGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISG 431 (595)
T ss_dssp HHHHHHHHTCSCCCEEEEEECSSC-------EEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSS
T ss_pred hHhhhhhcccccceeEEEeecccc-------cccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCC
Confidence 7621 11112333333221 233333344567899999998642 344 8899853
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.61 E-value=9.8e-06 Score=69.88 Aligned_cols=190 Identities=7% Similarity=0.030 Sum_probs=116.4
Q ss_pred ceEEEEEecCCCcEEEEEec--CCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-
Q 010256 284 VITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD- 360 (514)
Q Consensus 284 ~i~~v~~~p~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~- 360 (514)
....+.|+|++ .++++.+. ++.|+++|+.+++.. ..+..... .....+++. +..|+...
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~----~~i~l~~~-----------~fgeGi~~~--g~~lyv~t~ 83 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVE----NIHKMDDS-----------YFGEGLTLL--NEKLYQVVW 83 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEE----EEEECCTT-----------CCEEEEEEE--TTEEEEEET
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEE----EEEecCCC-----------cceEEEEEe--CCEEEEEEe
Confidence 46899999987 66666553 689999999998864 22221110 112234544 55666554
Q ss_pred -CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec-
Q 010256 361 -YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE- 438 (514)
Q Consensus 361 -~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~- 438 (514)
++.+.++|..+ .+.+.++... ... ...+++||+.|+.+..++.|.++|..+.+.. ..+.
T Consensus 84 ~~~~v~viD~~t-~~v~~~i~~g-~~~----------------g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~-~~I~V 144 (266)
T 2iwa_A 84 LKNIGFIYDRRT-LSNIKNFTHQ-MKD----------------GWGLATDGKILYGSDGTSILYEIDPHTFKLI-KKHNV 144 (266)
T ss_dssp TCSEEEEEETTT-TEEEEEEECC-SSS----------------CCEEEECSSSEEEECSSSEEEEECTTTCCEE-EEEEC
T ss_pred cCCEEEEEECCC-CcEEEEEECC-CCC----------------eEEEEECCCEEEEECCCCeEEEEECCCCcEE-EEEEE
Confidence 49999999987 7778777543 111 3446678887777777899999999887544 3333
Q ss_pred C-CCc---ceeEEEECCCCCceeecCCCCeEEEeeCCCCCc-cccCCccc---------ccccceEEEEEcCCCCEEEEE
Q 010256 439 A-SKN---PMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSA-LDANGNAF---------DFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 439 ~-~~~---~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~-~~~~~~~~---------~~~~~v~~~~~spd~~~l~~~ 504 (514)
+ ... ..+.+.+. +++..+....++.|.+++-..... ..+..... ........++|+|+++.|.++
T Consensus 145 g~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT 223 (266)
T 2iwa_A 145 KYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT 223 (266)
T ss_dssp EETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE
T ss_pred CCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE
Confidence 1 112 35577777 676666666677777743322110 01110000 012356899999999888876
Q ss_pred e--cCcEEE
Q 010256 505 A--SNSLYM 511 (514)
Q Consensus 505 ~--~~~~~i 511 (514)
+ .+.+++
T Consensus 224 gk~~~~v~~ 232 (266)
T 2iwa_A 224 GKLWPKLFE 232 (266)
T ss_dssp ETTCSEEEE
T ss_pred CCCCCeEEE
Confidence 6 444444
No 246
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.58 E-value=1.4e-05 Score=74.31 Aligned_cols=264 Identities=9% Similarity=0.071 Sum_probs=139.3
Q ss_pred CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCC
Q 010256 46 SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSAN 125 (514)
Q Consensus 46 ~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~ 125 (514)
++..++.++.++.|..+|..+++.. . ...... ........ .
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~---------------------W--~~~~~~------------~~~~~p~~--~-- 142 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVA---------------------W--QTKVAG------------EALSRPVV--S-- 142 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEE---------------------E--EEECSS------------CCCSCCEE--E--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEE---------------------E--EEeCCC------------ceEcCCEE--E--
Confidence 3557777888999999998877742 1 111111 00111112 1
Q ss_pred CcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCC
Q 010256 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (514)
Q Consensus 126 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (514)
+..+++++.++.|..+|..+++............... ........ ++ .+ +.+..++
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~----------~~~~~~~~-~~-~v------------~~g~~~g 198 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR----------GESAPTTA-FG-AA------------VVGGDNG 198 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C----------CCCCCEEE-TT-EE------------EECCTTT
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec----------CCCCcEEE-CC-EE------------EEEcCCC
Confidence 2378888889999999999998766555432110000 00011111 22 22 5566677
Q ss_pred cEEeceeeccccccccccccccccccCc------cCeEEEEECC--CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCC
Q 010256 206 SLRLPVVVTSQETNLVAGCRRIYAHAHD------YHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 276 (514)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~------~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (514)
.+..+| ..+.+. ...+..... ..+..+.-.| .+..+..+ .++.+..+|.++++.....
T Consensus 199 ~l~~~d-~~tG~~------~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~------ 265 (376)
T 3q7m_A 199 RVSAVL-MEQGQM------IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKR------ 265 (376)
T ss_dssp EEEEEE-TTTCCE------EEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEE------
T ss_pred EEEEEE-CCCCcE------EEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeec------
Confidence 777766 221111 111000000 0000000111 23455555 7899999999877655432
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEE
Q 010256 277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (514)
Q Consensus 277 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 356 (514)
. ......+... + ..++.++.++.+..+|..+++..++. +... ...+...... +..|
T Consensus 266 ~----~~~~~~~~~~--~-~~l~~~~~~g~l~~~d~~tG~~~w~~----~~~~-----------~~~~~~~~~~--~~~l 321 (376)
T 3q7m_A 266 E----LGSVNDFIVD--G-NRIYLVDQNDRVMALTIDGGVTLWTQ----SDLL-----------HRLLTSPVLY--NGNL 321 (376)
T ss_dssp C----CCCEEEEEEE--T-TEEEEEETTCCEEEEETTTCCEEEEE----CTTT-----------TSCCCCCEEE--TTEE
T ss_pred c----CCCCCCceEE--C-CEEEEEcCCCeEEEEECCCCcEEEee----cccC-----------CCcccCCEEE--CCEE
Confidence 1 1223344443 3 46777888999999999998764321 1000 0112222222 4456
Q ss_pred EEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEe
Q 010256 357 LSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (514)
Q Consensus 357 ~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 426 (514)
+.++ +|.|.++|..+ ++.+........... ..... .+..|+.++.+|.|+.|+
T Consensus 322 ~v~~~~g~l~~~d~~t-G~~~~~~~~~~~~~~--------------~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 322 VVGDSEGYLHWINVED-GRFVAQQKVDSSGFQ--------------TEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEECTTSEEEEEETTT-CCEEEEEECCTTCBC--------------SCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred EEEeCCCeEEEEECCC-CcEEEEEecCCCcce--------------eCCEE--ECCEEEEEeCCCEEEEEe
Confidence 6665 49999999987 777766654221110 01222 245677888999999987
No 247
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.54 E-value=1.6e-08 Score=93.70 Aligned_cols=176 Identities=9% Similarity=0.025 Sum_probs=86.6
Q ss_pred CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccc
Q 010256 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (514)
Q Consensus 244 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 322 (514)
++..++++ .|+.|+.||..+++...+. .. ..+.+..+..++ .++++++.|+.|+.||..+++..+...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~--------~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTL--------KE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLP 76 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEE--------EC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEe--------cC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeee
Confidence 46677777 8999999999988766543 11 233344445566 677778899999999998887642211
Q ss_pred cceeccCCCCccceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccce
Q 010256 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (514)
. .... .. ...++ +..++ .++++ .++.|+.||..+ ++.+..+..+.
T Consensus 77 ~--~~~~------~~--~~sp~----~~~~~-~v~~g~~dg~v~a~D~~t-G~~~w~~~~~~------------------ 122 (369)
T 2hz6_A 77 F--TIPE------LV--QASPC----RSSDG-ILYMGKKQDIWYVIDLLT-GEKQQTLSSAF------------------ 122 (369)
T ss_dssp C--CHHH------HH--TTCSC----C------CCCCEEEEEEEEECCC-------------------------------
T ss_pred c--cCcc------cc--ccCce----EecCC-EEEEEeCCCEEEEEECCC-CcEEEEecCCC------------------
Confidence 0 0000 00 00111 11233 44554 458999999997 77776665443
Q ss_pred eeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCC---CceeecCCCCeEEEe
Q 010256 402 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR---PSRPLGSLSGVVRRV 468 (514)
Q Consensus 402 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~s~d~~v~i~ 468 (514)
...++|++..|++++.|+.|+.||..+++.+ ..+..+ .....++.++. ..+++++.|+.+..+
T Consensus 123 -~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~-W~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~ 188 (369)
T 2hz6_A 123 -ADSLSPSTSLLYLGRTEYTITMYDTKTRELR-WNATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTV 188 (369)
T ss_dssp -----------EEEEEEEEEEECCCSSSSSCC-CEEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEE
T ss_pred -cccccccCCEEEEEecCCEEEEEECCCCCEE-EeEecc--cccCccccCCccccceEEEECCCCEEEEE
Confidence 2334568888999999999999999988543 222211 11223333332 456677888988883
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.53 E-value=2.3e-05 Score=66.70 Aligned_cols=190 Identities=13% Similarity=0.179 Sum_probs=112.6
Q ss_pred cceEEEEEcCCCCeEEEecCCC--eEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 36 DIISAIEFDKSGDHLATGDRGG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
.....+.|+ ++.++.+.+.+| .|+++|+.+++.. ..+.-. .
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~-----------------------~~~~l~-------------~ 85 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTL-----------------------QQIELG-------------K 85 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEE-----------------------EEEECC-------------T
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEE-----------------------EEEecC-------------C
Confidence 445789998 676666666665 8999999988753 111111 1
Q ss_pred ceeE--EEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 114 KINK--IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 114 ~v~~--i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
.... ++. .. +++.++.-.++.+.++|..+.+....+..... ...+++|++.+
T Consensus 86 ~~FgeGit~--~g-~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e------------------G~glt~dg~~L----- 139 (262)
T 3nol_A 86 RYFGEGISD--WK-DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE------------------GWGLTHNDQYL----- 139 (262)
T ss_dssp TCCEEEEEE--ET-TEEEEEESSSSEEEEEETTTCCEEEEEECSSC------------------CCCEEECSSCE-----
T ss_pred ccceeEEEE--eC-CEEEEEEeeCCEEEEEECccCcEEEEEECCCC------------------ceEEecCCCEE-----
Confidence 2222 333 22 23444456789999999999988777765421 34556777776
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCc-cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+....++.|.++| ..+.+. .........+.. ..++.+.|. +|+..+.. .+..|.+.|.++++.. .
T Consensus 140 -------~~SdGs~~i~~iD-p~T~~v---~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~-~ 206 (262)
T 3nol_A 140 -------IMSDGTPVLRFLD-PESLTP---VRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVT-G 206 (262)
T ss_dssp -------EECCSSSEEEEEC-TTTCSE---EEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEE-E
T ss_pred -------EEECCCCeEEEEc-CCCCeE---EEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEE-E
Confidence 5555577788877 222111 111111001111 345567776 77766666 7889999999866543 4
Q ss_pred eeccCC---Cc--ccccCCceEEEEEecCCCcEEEEE
Q 010256 270 IVDVKP---AN--MEDLTEVITSAEFHPTHCNMLAYS 301 (514)
Q Consensus 270 ~~~~~~---~~--~~~~~~~i~~v~~~p~~~~~l~~~ 301 (514)
.+++.. .. ........+.|+|+|++..++++|
T Consensus 207 ~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 207 IIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 444321 00 111234678999999984555544
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.50 E-value=3.6e-05 Score=65.48 Aligned_cols=190 Identities=11% Similarity=0.078 Sum_probs=114.8
Q ss_pred CceEEEEEecCCCcEEEEEecCC--eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe
Q 010256 283 EVITSAEFHPTHCNMLAYSSSKG--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360 (514)
Q Consensus 283 ~~i~~v~~~p~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 360 (514)
.....+.|+ ++ .++.+.+.+| .|+.+|+.+++... ..... .......+.+++..|....
T Consensus 43 ~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~----~~~l~-------------~~~FgeGit~~g~~ly~lt 103 (262)
T 3nol_A 43 AFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQ----QIELG-------------KRYFGEGISDWKDKIVGLT 103 (262)
T ss_dssp CEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEE----EEECC-------------TTCCEEEEEEETTEEEEEE
T ss_pred cccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEE----EEecC-------------CccceeEEEEeCCEEEEEE
Confidence 334788998 66 7788887776 89999999998742 22221 1233333334455666544
Q ss_pred --CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec
Q 010256 361 --YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE 438 (514)
Q Consensus 361 --~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 438 (514)
++.+.+||..+ .+.+.++..... ...+++|++.|+.+..++.|.++|..+.+.. ..+.
T Consensus 104 w~~~~v~v~D~~t-~~~~~ti~~~~e------------------G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~-~~I~ 163 (262)
T 3nol_A 104 WKNGLGFVWNIRN-LRQVRSFNYDGE------------------GWGLTHNDQYLIMSDGTPVLRFLDPESLTPV-RTIT 163 (262)
T ss_dssp SSSSEEEEEETTT-CCEEEEEECSSC------------------CCCEEECSSCEEECCSSSEEEEECTTTCSEE-EEEE
T ss_pred eeCCEEEEEECcc-CcEEEEEECCCC------------------ceEEecCCCEEEEECCCCeEEEEcCCCCeEE-EEEE
Confidence 59999999998 888888875432 2334457777776666788999999987544 3332
Q ss_pred C--CCcc---eeEEEECCCCCceeecCCCCeEEEeeCCC--CCc-cccCC---c---ccccccceEEEEEcCCCCEEEEE
Q 010256 439 A--SKNP---MRRQVQTPSRPSRPLGSLSGVVRRVKGAD--NSA-LDANG---N---AFDFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 439 ~--~~~~---v~~~~~~~~~~~l~s~s~d~~v~i~~~~~--~~~-~~~~~---~---~~~~~~~v~~~~~spd~~~l~~~ 504 (514)
. ...+ ++.+.+. +|++.+..-.+..|.+++-.. ... ..+.. . ........+.|||+|+++.|.+.
T Consensus 164 V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVT 242 (262)
T 3nol_A 164 VTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVT 242 (262)
T ss_dssp CEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEE
T ss_pred eccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEE
Confidence 2 1222 3446665 676666665566666622111 100 00100 0 00113456889999999998888
Q ss_pred ecCcEEEE
Q 010256 505 ASNSLYMY 512 (514)
Q Consensus 505 ~~~~~~i~ 512 (514)
+..-=.+|
T Consensus 243 GK~Wp~~~ 250 (262)
T 3nol_A 243 GKLWPKVF 250 (262)
T ss_dssp ETTCSEEE
T ss_pred CCCCCceE
Confidence 75543333
No 250
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.49 E-value=0.00052 Score=61.46 Aligned_cols=193 Identities=12% Similarity=0.071 Sum_probs=104.0
Q ss_pred CeEEEEECCCCCEEEEe-cC--CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 235 HINSISNNSDGETFISA-DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
.+..++++++++++++. .. ..|..+|..+++. ..+... . .......++..+.+ ..+++-..++.|..+|
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~-~~~~~~-----~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d 144 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV-ETLLTL-----P-DAIFLNGITPLSDT-QYLTADSYRGAIWLID 144 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE-EEEEEC-----T-TCSCEEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE-EEEEeC-----C-CccccCcccccCCC-cEEEEECCCCeEEEEe
Confidence 36788999999876665 32 2466667654432 222111 1 11223455555554 5555555688999999
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCc--eeeeeecccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGP--VATFQVHEHLRP 387 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~--~~~~~~~~~~~~ 387 (514)
..++... +......-.. ............+ +|+++.|+.++. +.|..+++...++. ...+......
T Consensus 145 ~~~~~~~---v~~~~~~~~~---~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P-- 214 (306)
T 2p4o_A 145 VVQPSGS---IWLEHPMLAR---SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNI-- 214 (306)
T ss_dssp TTTTEEE---EEEECGGGSC---SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCC--
T ss_pred CCCCcEe---EEEECCcccc---ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCC--
Confidence 7654210 0000000000 0000001123445 888888777643 89999998742221 1111110000
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee-eeeecCCCcceeEEEEC---CCCCceeecC
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-STTLEASKNPMRRQVQT---PSRPSRPLGS 460 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~---~~~~~l~s~s 460 (514)
..++++++|+++++....+.|.+++.. ++.. ...+........+++|. |+++.|...+
T Consensus 215 --------------~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 215 --------------DDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp --------------SSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred --------------CCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence 178999999988777778899999975 4322 11233333557788998 7866554443
No 251
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.43 E-value=0.00024 Score=63.74 Aligned_cols=234 Identities=8% Similarity=0.006 Sum_probs=127.8
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC-C-eEEEE
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-G-SIRLI 310 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g-~i~~w 310 (514)
.....++|+++++++++- .++.|..||.+. + ....+ .....+..+++.+++ +++++.... + .|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~-~~~~~--------~~~~~p~gia~~~dG-~l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHA--------TVEGKVSGLAFTSNG-DLVATGWNADSIPVVSL 100 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEE--------ECSSEEEEEEECTTS-CEEEEEECTTSCEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-c-eEEEE--------eCCCCceeEEEcCCC-cEEEEeccCCcceEEEE
Confidence 456789999999988877 789999999873 2 22221 123468899999998 665554332 2 46667
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCC-ceeeeeeccccccc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSG-PVATFQVHEHLRPK 388 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~-~~~~~~~~~~~~~~ 388 (514)
|..+++.. ....... ......++..+++..+++-. .+.|.++|... ++ .+......-.....
T Consensus 101 d~~~g~~~----~~~~~~~-----------~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~-~~~~v~~~~~~~~~~~~ 164 (306)
T 2p4o_A 101 VKSDGTVE----TLLTLPD-----------AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ-PSGSIWLEHPMLARSNS 164 (306)
T ss_dssp ECTTSCEE----EEEECTT-----------CSCEEEEEESSSSEEEEEETTTTEEEEEETTT-TEEEEEEECGGGSCSST
T ss_pred cCCCCeEE----EEEeCCC-----------ccccCcccccCCCcEEEEECCCCeEEEEeCCC-CcEeEEEECCccccccc
Confidence 77666531 1111100 01223444455554444443 48888888753 21 11111000000000
Q ss_pred cccccccCCccceeeEEEcCCCCEEEEE-eCCCcEEEEecCC-Ccee-eeeecCCCcceeEEEECCCCCceeecCCCCeE
Q 010256 389 LCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSE-GSAE-STTLEASKNPMRRQVQTPSRPSRPLGSLSGVV 465 (514)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v 465 (514)
......-..+ +++++.|..+ ...++|+.|++.. +... ...+. .......+++.++|+++++....+.|
T Consensus 165 ------~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V 235 (306)
T 2p4o_A 165 ------ESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSV 235 (306)
T ss_dssp ------TCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCE
T ss_pred ------cCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeE
Confidence 0001111134 7888766544 5678999999874 2211 11111 11345678999999887777766777
Q ss_pred EEeeCC-CCCccccCCcccccccceEEEEEc---CCCCEEEEEec
Q 010256 466 RRVKGA-DNSALDANGNAFDFSMKLLHLAWH---PSENSIACAAS 506 (514)
Q Consensus 466 ~i~~~~-~~~~~~~~~~~~~~~~~v~~~~~s---pd~~~l~~~~~ 506 (514)
.+++.. +.. .+. .........++++|. ||++.|.+++.
T Consensus 236 ~~~~~~G~~~--~~~-~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 236 VRIAPDRSTT--IIA-QAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EEECTTCCEE--EEE-CGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred EEECCCCCEE--EEe-ecccccCCceEEEEecccCCCCEEEEECC
Confidence 764321 110 000 000113568999999 89888776653
No 252
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.42 E-value=9e-05 Score=72.60 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=36.9
Q ss_pred CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
+.|..||..+ ++.+-++....... ...+...+..++.++.||.|+.||.++++.+
T Consensus 444 g~l~a~D~~t-G~~~W~~~~~~~~~----------------~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 444 GQIRAFDLTT-GKAKWTKWEKFAAW----------------GGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCCC----------------SBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CeEEEEECCC-CCEEEEecCCCCcc----------------ceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 6788888876 76665554332111 2223335667778999999999999998554
No 253
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.40 E-value=0.00074 Score=57.83 Aligned_cols=177 Identities=12% Similarity=0.161 Sum_probs=97.7
Q ss_pred CeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce--eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 235 HINSISNNSDGETFISA-DDLRINLWNLEISNQS--FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
....|++.+++.++++. .++.+.++++...... .....+.. .....+.....++|+|.+ +.|+++.......+|.
T Consensus 71 D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~-~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~ 148 (255)
T 3qqz_A 71 DLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPL-QESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYK 148 (255)
T ss_dssp SEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCC-SSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEE
T ss_pred ChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecccc-ccccccCCcceEEEeCCC-CEEEEEECcCCceEEE
Confidence 35567888888776776 7788888887654431 12111110 011235567899999998 5666666665666666
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE-EeC-CeEEEEEccCCCCceeeeeecccccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDY-MTLKLWDINMDSGPVATFQVHEHLRPKL 389 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (514)
+. +..........+... .. -..+...+.+++++|....++. .+. ..|.++|.. ++.+..+....+.-. +
T Consensus 149 ~~-g~~~~~~l~i~~~~~---~~--~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~-l 219 (255)
T 3qqz_A 149 VN-GLLSSNELHISKDKA---LQ--RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV--GEVIGEMSLTKGSRG-L 219 (255)
T ss_dssp EE-STTCSSCCEEEECHH---HH--HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECSTTGGG-C
T ss_pred Ec-ccccCCceeeecchh---hc--cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC--CCEEEEEEcCCccCC-c
Confidence 65 211100011111100 00 0001235789999996555544 444 888999876 666666654432100 0
Q ss_pred ccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
. ..+..-..|+|.++|+++++ +.-+.++.|...
T Consensus 220 ~-----~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~~ 252 (255)
T 3qqz_A 220 S-----HNIKQAEGVAMDASGNIYIV-SEPNRFYRFTPQ 252 (255)
T ss_dssp S-----SCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC-
T ss_pred c-----cccCCCCeeEECCCCCEEEE-cCCceEEEEEec
Confidence 0 00011127999999986655 666777777543
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.38 E-value=5.2e-05 Score=64.52 Aligned_cols=183 Identities=11% Similarity=-0.027 Sum_probs=112.8
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
.-...+.|+. +.++.+. .+|.|+.+|+++++....+ +.+ ...-..+++ ++..+++..-.++.+.+||.
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~------~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~ 123 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME--RLG------NIFAEGLAS--DGERLYQLTWTEGLLFTWSG 123 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE--ECT------TCCEEEEEE--CSSCEEEEESSSCEEEEEET
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE--CCC------CcceeEEEE--eCCEEEEEEccCCEEEEEEC
Confidence 3457888874 4444554 7889999999987765443 211 111123444 44356666777999999999
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeecccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
.+.+.. ..+.... .-. .++++++.|+.++ .++|.++|..+ .+.+.++.......
T Consensus 124 ~Tl~~~----~ti~~~~-------------eGw--GLt~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~----- 178 (268)
T 3nok_A 124 MPPQRE----RTTRYSG-------------EGW--GLCYWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQ----- 178 (268)
T ss_dssp TTTEEE----EEEECSS-------------CCC--CEEEETTEEEEECSSSEEEEECTTT-CCEEEEEECEETTE-----
T ss_pred CcCcEE----EEEeCCC-------------cee--EEecCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCc-----
Confidence 998763 3333211 112 3335678777765 48999999987 77777776543211
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC-------------CcceeEEEECCCCCce-e
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-------------KNPMRRQVQTPSRPSR-P 457 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l-~ 457 (514)
.+..+..+.|. +|++.+..-.++.|.+.|.++++.. ..+.-. ..-.+.+++.|+++.| +
T Consensus 179 -----~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~-~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfV 251 (268)
T 3nok_A 179 -----PVELINELECA-NGVIYANIWHSSDVLEIDPATGTVV-GVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFM 251 (268)
T ss_dssp -----ECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEE-EEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEE
T ss_pred -----ccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEE-EEEECCCCcccccccccCcCCceEEEEEcCCCCEEEE
Confidence 01112256666 7766655556789999999998543 333211 1345789999976544 4
Q ss_pred ec
Q 010256 458 LG 459 (514)
Q Consensus 458 s~ 459 (514)
+|
T Consensus 252 TG 253 (268)
T 3nok_A 252 TG 253 (268)
T ss_dssp EE
T ss_pred eC
Confidence 43
No 255
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.36 E-value=0.00063 Score=59.53 Aligned_cols=191 Identities=7% Similarity=-0.053 Sum_probs=112.3
Q ss_pred CeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 235 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
.+..++|++++..|..+ ..+.|..+++..... ..++ .........++++|++..++++-...+.|.++++
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~-------~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~ 108 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTII-------RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM 108 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEE-------CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEE-------ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEc
Confidence 46789999976666655 688999999874432 2211 1122467899999976356666666789999998
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe----CCeEEEEEccCCCCceeeeeeccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGPVATFQVHEHLRPK 388 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 388 (514)
..... ..+... .......++++|++..|+.++ .+.|..+++. +.....+... ..
T Consensus 109 ~g~~~-----~~~~~~-----------~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d--g~~~~~~~~~-~~--- 166 (267)
T 1npe_A 109 DGTQR-----RVLFDT-----------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD--GTNRRILAQD-NL--- 166 (267)
T ss_dssp TSCSC-----EEEECS-----------SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT--SCCCEEEECT-TC---
T ss_pred CCCCE-----EEEEEC-----------CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC--CCCcEEEEEC-CC---
Confidence 64321 111100 013468899999766555433 2678888876 3333322111 00
Q ss_pred cccccccCCccceeeEEEcCCCCEEEEE-eCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 389 LCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
..-..++++++++.|..+ ...+.|.++++... .....+..-. ....++.. .+.++++....+.|..
T Consensus 167 ----------~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~~~~-~P~gi~~d-~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 167 ----------GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIA 233 (267)
T ss_dssp ----------SCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred ----------CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-ceEEEecCCC-CceEEEEe-CCEEEEEECCCCeEEE
Confidence 001279999987766544 46689999998743 2223333322 23455554 3444455545567766
Q ss_pred e
Q 010256 468 V 468 (514)
Q Consensus 468 ~ 468 (514)
+
T Consensus 234 ~ 234 (267)
T 1npe_A 234 M 234 (267)
T ss_dssp E
T ss_pred E
Confidence 3
No 256
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.34 E-value=0.00011 Score=66.57 Aligned_cols=194 Identities=11% Similarity=0.017 Sum_probs=110.6
Q ss_pred CeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCC------------cccccCCceEEEEEec-CCCcEEEE
Q 010256 235 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA------------NMEDLTEVITSAEFHP-THCNMLAY 300 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~------------~~~~~~~~i~~v~~~p-~~~~~l~~ 300 (514)
...+++++++++++.++ .++.|..|+....... .+...... ........+..+++.+ ++ + |+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~-l~v 96 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-Q-LYI 96 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-E-EEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC-c-EEE
Confidence 35678899999867777 8899999988743321 11000000 0001123578999998 65 4 444
Q ss_pred EecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec-CCCEEEEEe------------------C
Q 010256 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD------------------Y 361 (514)
Q Consensus 301 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~------------------~ 361 (514)
+...+.|..+|..++.. ..+..... .........+++.+ +|++.++-. .
T Consensus 97 ~d~~~~i~~~d~~~g~~-----~~~~~~~~-------~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~ 164 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHA-----TQLATSVD-------GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT 164 (322)
T ss_dssp EETTTEEEEECTTCEEC-----EEEESEET-------TEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred EECCCCEEEEeCCCCEE-----EEecccCC-------CCcccccceEEEecCCCEEEEECCcccccccccceehcccCCC
Confidence 55556688888765532 11111000 00113467899999 998777632 1
Q ss_pred CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE-eCCCcEEEEecCCCce-eeeeecC
Q 010256 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSA-ESTTLEA 439 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~-~~~~~~~ 439 (514)
+.|..||... ++ +..+...-.. -..++|+|+|+.|..+ +..+.|++|++..... ....+..
T Consensus 165 g~v~~~d~~~-~~-~~~~~~~~~~---------------p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~ 227 (322)
T 2fp8_A 165 GRLIKYDPST-KE-TTLLLKELHV---------------PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK 227 (322)
T ss_dssp EEEEEEETTT-TE-EEEEEEEESC---------------CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE
T ss_pred ceEEEEeCCC-CE-EEEeccCCcc---------------CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe
Confidence 5677787654 32 2222111000 1179999999866555 5668999999874211 0111111
Q ss_pred CCcceeEEEECCCCCceeecCC
Q 010256 440 SKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 440 ~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
... ...+++.++|++.++...
T Consensus 228 ~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 228 IPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp CSS-EEEEEECTTSCEEEEEEE
T ss_pred CCC-CCCeEECCCCCEEEEecC
Confidence 122 667899999987766544
No 257
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.33 E-value=5.7e-05 Score=64.29 Aligned_cols=185 Identities=11% Similarity=0.040 Sum_probs=112.5
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--
Q 010256 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-- 360 (514)
Q Consensus 283 ~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-- 360 (514)
.....+.|+. + .++.+.+.+|.|+.+|+.+++...+ + .. .........+++..|+...
T Consensus 55 ~ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv~~~----~-l~-------------~~~FgeGit~~g~~Ly~ltw~ 114 (268)
T 3nok_A 55 AFTQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQPVWM----E-RL-------------GNIFAEGLASDGERLYQLTWT 114 (268)
T ss_dssp CCEEEEEEET-T-EEEEEETTTTEEEECCSSCSSCSEE----E-EC-------------TTCCEEEEEECSSCEEEEESS
T ss_pred cccceEEEEC-C-EEEEEcCCCCEEEEEECCCCcEEeE----E-CC-------------CCcceeEEEEeCCEEEEEEcc
Confidence 3457888874 4 7888888999999999999987432 2 11 1222222333455555443
Q ss_pred CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC-
Q 010256 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA- 439 (514)
Q Consensus 361 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~- 439 (514)
++.+.+||..+ .+.+.++....... .++ +|++.|+.+..++.|+++|..+.+.. ..+..
T Consensus 115 ~~~v~V~D~~T-l~~~~ti~~~~eGw----------------GLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~-~~I~V~ 174 (268)
T 3nok_A 115 EGLLFTWSGMP-PQRERTTRYSGEGW----------------GLC--YWNGKLVRSDGGTMLTFHEPDGFALV-GAVQVK 174 (268)
T ss_dssp SCEEEEEETTT-TEEEEEEECSSCCC----------------CEE--EETTEEEEECSSSEEEEECTTTCCEE-EEEECE
T ss_pred CCEEEEEECCc-CcEEEEEeCCCcee----------------EEe--cCCCEEEEECCCCEEEEEcCCCCeEE-EEEEeC
Confidence 59999999997 88888887532211 344 57888777777899999999987544 33332
Q ss_pred -CCc---ceeEEEECCCCCceeecCCCCeEEEeeCCC--CCc-cccCC---c----ccccccceEEEEEcCCCCEEEEEe
Q 010256 440 -SKN---PMRRQVQTPSRPSRPLGSLSGVVRRVKGAD--NSA-LDANG---N----AFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 440 -~~~---~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~--~~~-~~~~~---~----~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
+.. .++.+.+. +|++.+..-.+..|.+++-.. ... ..+.. . ......-.+.|||+|+++.|.+.+
T Consensus 175 ~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 175 LRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 222 23455665 666666665566666522111 110 00100 0 011234568899999988888777
Q ss_pred cCc
Q 010256 506 SNS 508 (514)
Q Consensus 506 ~~~ 508 (514)
..-
T Consensus 254 K~W 256 (268)
T 3nok_A 254 KLW 256 (268)
T ss_dssp TTC
T ss_pred CCC
Confidence 543
No 258
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.31 E-value=0.0022 Score=59.46 Aligned_cols=171 Identities=9% Similarity=0.022 Sum_probs=96.3
Q ss_pred EEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC-CeEEEEEcC
Q 010256 237 NSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDMR 313 (514)
Q Consensus 237 ~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g~i~~wd~~ 313 (514)
..+++++.+..|..+ ..+.|.+.+++... ...+ +.........++++|.++.++++-... +.|..+++.
T Consensus 162 ~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~~l-------~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 162 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp CCEEEETTTTEEEEEETTTTEEEECBTTSCS-CEEE-------ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred cEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eEEe-------ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 457777755554444 57788888876332 2111 112235578999999774555554445 788888876
Q ss_pred CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeecccccccccc
Q 010256 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
.... ..+-. ........++++|++..|+.++. +.|..+|+.. .....+......
T Consensus 234 G~~~-----~~~~~-----------~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG--~~~~~~~~~~~~------ 289 (386)
T 3v65_B 234 GSGR-----RIIAD-----------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG--SHRKAVISQGLP------ 289 (386)
T ss_dssp SCSC-----EEEEC-----------SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS--CSCEEEECSSCS------
T ss_pred CCCc-----EEEEE-----------CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC--CeeEEEEECCCC------
Confidence 5321 11111 11135688999988777777643 7888888763 322222211100
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEE
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 449 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 449 (514)
. -..+++ .++.++++-...+.|..++..+++.. .++.........+++
T Consensus 290 -----~---P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~-~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 290 -----H---PFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ-EIIRNKLHFPMDIHT 337 (386)
T ss_dssp -----S---EEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC-EEEECSCSCCCCEEE
T ss_pred -----C---ceEEEE-ECCEEEEeeCCCCeEEEEECCCCcce-EEEccCCCCCceEEE
Confidence 0 126777 34555666667788999986666443 334333233334433
No 259
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.31 E-value=0.00039 Score=58.62 Aligned_cols=187 Identities=11% Similarity=0.091 Sum_probs=109.2
Q ss_pred CCceEEEEEecCCCcEEEEEecCC--eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE
Q 010256 282 TEVITSAEFHPTHCNMLAYSSSKG--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 359 (514)
Q Consensus 282 ~~~i~~v~~~p~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 359 (514)
......+.|++ + .++.+.+.+| .|+.+|+.+++.. ....... ........+.+..|...
T Consensus 20 ~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~----~~~~l~~-------------~~fgeGi~~~~~~ly~l 80 (243)
T 3mbr_X 20 TAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRIL----QRAEVPP-------------PYFGAGIVAWRDRLIQL 80 (243)
T ss_dssp TCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEE----EEEECCT-------------TCCEEEEEEETTEEEEE
T ss_pred ccccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEE----EEEeCCC-------------CcceeEEEEeCCEEEEE
Confidence 34567899987 4 6777777754 8999999999864 2222221 22223233345556554
Q ss_pred e--CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee
Q 010256 360 D--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL 437 (514)
Q Consensus 360 ~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 437 (514)
. ++.+.+||.++ .+.+.++..... ...+.+|++.|+.+..++.|.++|..+.+.. ..+
T Consensus 81 tw~~~~v~v~D~~t-l~~~~ti~~~~~------------------Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~-~~I 140 (243)
T 3mbr_X 81 TWRNHEGFVYDLAT-LTPRARFRYPGE------------------GWALTSDDSHLYMSDGTAVIRKLDPDTLQQV-GSI 140 (243)
T ss_dssp ESSSSEEEEEETTT-TEEEEEEECSSC------------------CCEEEECSSCEEEECSSSEEEEECTTTCCEE-EEE
T ss_pred EeeCCEEEEEECCc-CcEEEEEeCCCC------------------ceEEeeCCCEEEEECCCCeEEEEeCCCCeEE-EEE
Confidence 3 49999999997 888888775432 2233456776666667889999999987543 333
Q ss_pred cC--CCc---ceeEEEECCCCCceeecCCCCeEEEeeCC--CCCc-cc---cCCcc----cccccceEEEEEcCCCCEEE
Q 010256 438 EA--SKN---PMRRQVQTPSRPSRPLGSLSGVVRRVKGA--DNSA-LD---ANGNA----FDFSMKLLHLAWHPSENSIA 502 (514)
Q Consensus 438 ~~--~~~---~v~~~~~~~~~~~l~s~s~d~~v~i~~~~--~~~~-~~---~~~~~----~~~~~~v~~~~~spd~~~l~ 502 (514)
+. +.. .++.+.+. +++..+..-.+..|.+++-. +... .. +.... .....-.+.|||+|+++.|.
T Consensus 141 ~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lf 219 (243)
T 3mbr_X 141 KVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLF 219 (243)
T ss_dssp ECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEE
T ss_pred EEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEE
Confidence 32 222 23445544 55655555444455441111 0000 00 00000 11234568899999998888
Q ss_pred EEecCc
Q 010256 503 CAASNS 508 (514)
Q Consensus 503 ~~~~~~ 508 (514)
+.+..-
T Consensus 220 VTGK~w 225 (243)
T 3mbr_X 220 VTGKRW 225 (243)
T ss_dssp EEETTC
T ss_pred EECCCC
Confidence 777543
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.29 E-value=0.00022 Score=70.00 Aligned_cols=55 Identities=24% Similarity=0.238 Sum_probs=37.1
Q ss_pred CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
+.|..||+.+ ++.+-......... .-.....+.+++.++.||.++.||.++++.+
T Consensus 466 G~l~A~D~~t-G~~~W~~~~~~~~~----------------~g~~~tagglvf~g~~dg~l~A~D~~tG~~l 520 (582)
T 1flg_A 466 GSLRAMDPVS-GKVVWEHKEHLPLW----------------AGVLATAGNLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCCC----------------SCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ceEEEEECCC-CCEEEEecCCCCCc----------------ccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence 6788888887 77665554332110 1112234678888999999999999998554
No 261
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.27 E-value=0.00028 Score=59.55 Aligned_cols=182 Identities=9% Similarity=0.021 Sum_probs=109.6
Q ss_pred cCeEEEEECCCCCEEEEe-c--CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEE
Q 010256 234 YHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 310 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~w 310 (514)
.-...+.|++ +.++.+. . +..|+.+|+++++....+ .+..+ ..-..+++. +..+++..-.++.+.+|
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~------~l~~~-~fgeGi~~~--~~~ly~ltw~~~~v~v~ 90 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA------EVPPP-YFGAGIVAW--RDRLIQLTWRNHEGFVY 90 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE------ECCTT-CCEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE------eCCCC-cceeEEEEe--CCEEEEEEeeCCEEEEE
Confidence 4466899987 4444444 4 459999999987655433 12111 111234444 33566667779999999
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeecccccccc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKL 389 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (514)
|..+.+.. ..+.... ....+.++++.|+.++ +++|.++|..+ .+.+.++.......
T Consensus 91 D~~tl~~~----~ti~~~~---------------~Gwglt~dg~~L~vSdgs~~l~~iDp~t-~~~~~~I~V~~~g~--- 147 (243)
T 3mbr_X 91 DLATLTPR----ARFRYPG---------------EGWALTSDDSHLYMSDGTAVIRKLDPDT-LQQVGSIKVTAGGR--- 147 (243)
T ss_dssp ETTTTEEE----EEEECSS---------------CCCEEEECSSCEEEECSSSEEEEECTTT-CCEEEEEECEETTE---
T ss_pred ECCcCcEE----EEEeCCC---------------CceEEeeCCCEEEEECCCCeEEEEeCCC-CeEEEEEEEccCCc---
Confidence 99998763 3333211 1123345677666654 48999999987 77777776543211
Q ss_pred ccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC-------------CCcceeEEEECCCCCce
Q 010256 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-------------SKNPMRRQVQTPSRPSR 456 (514)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l 456 (514)
.+..+..+.+. +|+..+..-.+..|.+.|..+++.. ..+.- ...-.+.+++.|+++.|
T Consensus 148 -------~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~-~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~l 218 (243)
T 3mbr_X 148 -------PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVV-AWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRL 218 (243)
T ss_dssp -------ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEE-EEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred -------ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEE-EEEECCcCccccccccCCcCCceEEEEEcCCCCEE
Confidence 00111245554 6766655556789999999998543 33321 11345789999876544
Q ss_pred e
Q 010256 457 P 457 (514)
Q Consensus 457 ~ 457 (514)
.
T Consensus 219 f 219 (243)
T 3mbr_X 219 F 219 (243)
T ss_dssp E
T ss_pred E
Confidence 3
No 262
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.26 E-value=7.7e-05 Score=75.95 Aligned_cols=193 Identities=12% Similarity=0.088 Sum_probs=105.4
Q ss_pred CeEEEEEC-CCCCEEEEe-c-C----CeEEEEeccCC-CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC--
Q 010256 235 HINSISNN-SDGETFISA-D-D----LRINLWNLEIS-NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-- 304 (514)
Q Consensus 235 ~v~~~~~~-~~~~~l~s~-~-d----~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-- 304 (514)
.+...+|+ |||++|+.+ + + .+|+++|+.++ +.... .+. ....+++|+||+ +.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------~~~---~~~~~~~WspDg-~~l~y~~~d~~ 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------KVS---GTNGEIVWGPDH-TSLFYVTKDET 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------CEE---EECSCCEECSST-TEEEEEEECTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------ccc---CceeeEEEecCC-CEEEEEEECCC
Confidence 57789999 999998865 2 2 35999999876 42110 111 113467899999 666666654
Q ss_pred ---CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe----CCeEEEEEccCCCCce-
Q 010256 305 ---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGPV- 376 (514)
Q Consensus 305 ---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~~~i~iwd~~~~~~~~- 376 (514)
..|.++++.++.... ...+... .......+.|||||++|+... ...|.++|+..+....
T Consensus 244 ~~~~~v~~~~lgt~~~~~--~lv~~~~-----------~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~ 310 (751)
T 2xe4_A 244 LRENKVWRHVMGKLQSED--VCLYEEH-----------NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNT 310 (751)
T ss_dssp CCEEEEEEEETTSCGGGC--EEEEECC-----------CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCC
T ss_pred CCCCEEEEEECCCCchhc--EEEEecC-----------CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCce
Confidence 257777876654211 1122211 112356789999999988642 2578888887521122
Q ss_pred -eeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC----CcEEEEecCCCceeeee-ecCCCc--ceeEEE
Q 010256 377 -ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGSAESTT-LEASKN--PMRRQV 448 (514)
Q Consensus 377 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~-~~~~~~--~v~~~~ 448 (514)
..+...... . .+++.|+.++.+++....+ ..|..+++.+.... .. +-.+.. .+..+.
T Consensus 311 ~~~l~~~~~~-----------~---~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~-~~~li~~~~~~~l~~~~ 375 (751)
T 2xe4_A 311 LEIVRPREKG-----------V---RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDW-SHVLVDHSEDVFMESIA 375 (751)
T ss_dssp EEESSCCCTT-----------C---CEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCC-CCEEECCCSSEEEEEEE
T ss_pred eEEeecCCCC-----------c---eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccc-eeeEECCCCCcEEEEEE
Confidence 222211110 0 1244444333444444443 35667776642121 22 222322 344555
Q ss_pred ECCCCCceeecCCCCeEEE
Q 010256 449 QTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 449 ~~~~~~~l~s~s~d~~v~i 467 (514)
+. .+.++++...++..++
T Consensus 376 ~~-~~~lv~~~~~~g~~~l 393 (751)
T 2xe4_A 376 VR-SNYLVVAGRRAGLTRI 393 (751)
T ss_dssp EC-SSEEEEEEEETTEEEE
T ss_pred EE-CCEEEEEEEeCCEEEE
Confidence 54 3445667777887776
No 263
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.24 E-value=0.0027 Score=57.86 Aligned_cols=157 Identities=10% Similarity=0.044 Sum_probs=92.8
Q ss_pred eEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC-CeEEEEEc
Q 010256 236 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDM 312 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g~i~~wd~ 312 (514)
...+++++.+..|..+ ..+.|.+.+++.... ..+ ..........++++|.++.++++-... +.|..+++
T Consensus 118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l-------~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE-------ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EEE-------EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 3568888765555444 678899999873322 111 112234578999999764555555555 78888887
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeeccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
..... ..+-. ........++++|++..|+.++. +.|..+|+.. .....+......
T Consensus 190 dG~~~-----~~~~~-----------~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG--~~~~~~~~~~~~----- 246 (349)
T 3v64_C 190 DGSGR-----RIIAD-----------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG--SHRKAVISQGLP----- 246 (349)
T ss_dssp TSCSC-----EESCC-----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECSSCS-----
T ss_pred CCCCc-----EEEEE-----------CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC--CceEEEEeCCCC-----
Confidence 65321 11100 01135788999998877777643 8899999863 322222211100
Q ss_pred cccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
. -..+++ .++.++++-...+.|..++..+++..
T Consensus 247 ------~---P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 247 ------H---PFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp ------S---EEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred ------C---ceEEEE-ECCEEEEecCCCCeEEEEEccCCCcc
Confidence 0 126777 34555556566788888886666443
No 264
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.23 E-value=0.0016 Score=63.73 Aligned_cols=80 Identities=11% Similarity=0.163 Sum_probs=47.5
Q ss_pred EEEECCCCCEEEEe-cC----------------CeEEEEeccCCCceeeeeccCCCc---ccccCCceEEEEEe-cCCC-
Q 010256 238 SISNNSDGETFISA-DD----------------LRINLWNLEISNQSFNIVDVKPAN---MEDLTEVITSAEFH-PTHC- 295 (514)
Q Consensus 238 ~~~~~~~~~~l~s~-~d----------------~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~i~~v~~~-p~~~- 295 (514)
.+++.++..++..+ .+ +.|..+|.++++...... ..+.. +.....++. +... .+|.
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q-~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQ-KTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEE-SSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEee-cCCCccccccCCCccEE-EeccccCCcE
Confidence 34566777777766 44 489999999877654431 11000 001112222 2232 4552
Q ss_pred -cEEEEEecCCeEEEEEcCCCcccc
Q 010256 296 -NMLAYSSSKGSIRLIDMRQSALCD 319 (514)
Q Consensus 296 -~~l~~~~~dg~i~~wd~~~~~~~~ 319 (514)
..++.++.+|.+.++|.++++.+.
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEEECCCcEEEEEECCCCCEee
Confidence 367778899999999999998754
No 265
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.23 E-value=0.00035 Score=70.02 Aligned_cols=252 Identities=8% Similarity=-0.008 Sum_probs=119.3
Q ss_pred eEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-cC-----CeE
Q 010256 236 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SK-----GSI 307 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~d-----g~i 307 (514)
..++++..++++++.| .+..+.+||..+..-. .+ . .+..... -.+++..+++ ++++.|+ .+ ..+
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~-~~---~--~~~~~R~-~~s~~~~~dg-~iyv~GG~~~~~~~~~~~ 316 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWI-PG---P--DMQVARG-YQSSATMSDG-RVFTIGGSWSGGVFEKNG 316 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEE-EC---C--CCSSCCS-SCEEEECTTS-CEEEECCCCCSSSCCCCE
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCcee-EC---C--CCCcccc-ccceEEecCC-eEEEEeCcccCCcccccc
Confidence 3456778899999987 5678999999855321 11 1 1111111 1345566787 7888888 34 468
Q ss_pred EEEEcCCCccccccccceeccCCCCcc-ceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccc
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTR-SFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
.+||..+..-.. +........+... .....+.+.+..+.. .+|+.+..+....+..||... ..............
T Consensus 317 e~yd~~t~~W~~--~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg-~~g~~~~~~~~~~v~~yd~~~-~~w~~~~~~~~~~~ 392 (656)
T 1k3i_A 317 EVYSPSSKTWTS--LPNAKVNPMLTADKQGLYRSDNHAWLFGW-KKGSVFQAGPSTAMNWYYTSG-SGDVKSAGKRQSNR 392 (656)
T ss_dssp EEEETTTTEEEE--ETTSCSGGGCCCCTTGGGTTTCSCCEEEC-GGGCEEECCSSSEEEEEECST-TCEEEEEEECEETT
T ss_pred eEeCCCCCccee--CCCccccccccccccceeecCCceEEEEC-CCCcEEEecCccceeeeecCC-cceeecCCcccccc
Confidence 999998754211 0000000000000 000001112221111 233333333336788899876 33222221111000
Q ss_pred cccccccccCCccceeeEEEc-CCCCEEEEEeCCC-----------cEEEEecCCCceeeee-ecCCCcc-eeEEEECCC
Q 010256 387 PKLCDLYENDSIFDKFECCLS-GDGGRVATGSYSN-----------LFRVFGCSEGSAESTT-LEASKNP-MRRQVQTPS 452 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~-~~~~~~~-v~~~~~~~~ 452 (514)
. . .. .... -.++.|. .++++++.|+.++ .|.+||..+....... -..+... -..++..|+
T Consensus 393 ~-~-~~---~~~~-~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~ 466 (656)
T 1k3i_A 393 G-V-AP---DAMC-GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPD 466 (656)
T ss_dssp E-E-CC---CCBT-CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTT
T ss_pred c-c-CC---CCCC-CceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCC
Confidence 0 0 00 0000 0134444 3778888887542 6888888776543211 0112222 234567789
Q ss_pred CCceeecCCCC-----------eEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEec
Q 010256 453 RPSRPLGSLSG-----------VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS 506 (514)
Q Consensus 453 ~~~l~s~s~d~-----------~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~ 506 (514)
+++++.|+.+. .+.+++-... ...................+.||+++++.|+.
T Consensus 467 g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~-~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 467 GSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD-TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT-EEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCEEEECCcccCcCcCCCCcccceEEEcCCCC-ceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 99999998652 2334221100 00000000011122234556799999998884
No 266
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.20 E-value=0.0031 Score=56.62 Aligned_cols=228 Identities=7% Similarity=-0.037 Sum_probs=123.4
Q ss_pred CeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeecc
Q 010256 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTS 215 (514)
Q Consensus 136 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 215 (514)
+.|+..++.+.+...+.... ..+..++|.++++.+ +++-...+.|..++ +..
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~----------------~~p~g~~~d~~~~~l-----------y~~D~~~~~I~~~~-~~g 61 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNL----------------RNVVALDTEVASNRI-----------YWSDLSQRMICSTQ-LDR 61 (316)
T ss_dssp SSEEEEETTSCCCEEEECSC----------------SSEEEEEEETTTTEE-----------EEEETTTTEEEEEE-C--
T ss_pred CeEEEEECCCcceEehhcCC----------------CceEEEEEEeCCCEE-----------EEEECCCCcEEEEE-CCC
Confidence 46888888776544332211 111267777765544 13334456676665 221
Q ss_pred ccccccccccccccccCccCeEEEEECCCCCEEE-Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecC
Q 010256 216 QETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 293 (514)
Q Consensus 216 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~ 293 (514)
... ...........-.....+++++.+..|. +- ..+.|.+.+++. .....++ .........++++|.
T Consensus 62 ~~~---~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~-------~~~~~~P~~iavdp~ 130 (316)
T 1ijq_A 62 AHG---VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLF-------RENGSKPRAIVVDPV 130 (316)
T ss_dssp ---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEEE-------ECTTCCEEEEEEETT
T ss_pred CCC---CcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC-CceEEEE-------ECCCCCcceEEeCCC
Confidence 000 0000111111223457899987655554 44 688999999873 3222221 112346789999997
Q ss_pred CCcEEEEEecC-CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEcc
Q 010256 294 HCNMLAYSSSK-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDIN 370 (514)
Q Consensus 294 ~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~ 370 (514)
++.++++.... +.|..+++..... +.+.. ........++++|++..|+.++. +.|..+|+.
T Consensus 131 ~g~ly~~d~~~~~~I~~~~~dG~~~-----~~~~~-----------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 131 HGFMYWTDWGTPAKIKKGGLNGVDI-----YSLVT-----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp TTEEEEEECSSSCEEEEEETTSCCE-----EEEEC-----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEccCCCCeEEEEcCCCCCe-----EEEEE-----------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 63555544333 6888888754321 11110 01135788999998888777653 799999987
Q ss_pred CCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 371 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
+.....+........ .-..+++. .+.++++-...++|..++..+++..
T Consensus 195 --g~~~~~~~~~~~~~~------------~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 195 --GGNRKTILEDEKRLA------------HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 242 (316)
T ss_dssp --SCSCEEEEECTTTTS------------SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred --CCceEEEeecCCccC------------CcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcce
Confidence 333333322110000 01267774 4555556667788999998776443
No 267
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.17 E-value=0.0016 Score=55.76 Aligned_cols=212 Identities=12% Similarity=0.093 Sum_probs=117.2
Q ss_pred ccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEE
Q 010256 278 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 357 (514)
Q Consensus 278 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 357 (514)
+.+....+..++|+|++..++++...++.|...|+. ++.. +.+... + ....-.+++.+++.+++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~----~~i~l~----------g-~~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLI----RTIPLD----------F-VKDLETIEYIGDNQFVI 85 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEE----EEEECS----------S-CSSEEEEEECSTTEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEE----EEEecC----------C-CCChHHeEEeCCCEEEE
Confidence 445556799999999874677778888999999987 5542 222211 0 13577888999998777
Q ss_pred EEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC--Cceee
Q 010256 358 SRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE--GSAES 434 (514)
Q Consensus 358 ~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~~ 434 (514)
+... +.+.++++...+. +.......-. +.....+. +...++|+|+++.|.++.......||.+.. .....
T Consensus 86 s~E~~~~l~~~~v~~~~~-i~~~~~~~~~---~~~~~~N~---g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l 158 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSE-VKILKKIKIP---LQESPTNC---GFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNEL 158 (255)
T ss_dssp EETTTTEEEEEEECTTCC-EEEEEEEECC---CSSCCCSS---CCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCC
T ss_pred EECCCCcEEEEEcCCCCe-eeeeeeeccc---cccccccC---CcceEEEeCCCCEEEEEECcCCceEEEEcccccCCce
Confidence 7543 8999999876332 2222111100 00001111 234899999997777766555555555431 00111
Q ss_pred eeec-------CCCcceeEEEECCCCC-ceeecCCCCeEEEee--CCCCCccccCCcccc---cccceEEEEEcCCCCEE
Q 010256 435 TTLE-------ASKNPMRRQVQTPSRP-SRPLGSLSGVVRRVK--GADNSALDANGNAFD---FSMKLLHLAWHPSENSI 501 (514)
Q Consensus 435 ~~~~-------~~~~~v~~~~~~~~~~-~l~s~s~d~~v~i~~--~~~~~~~~~~~~~~~---~~~~v~~~~~spd~~~l 501 (514)
..+. .+.....++++.|... +++....++.+-.++ |.-.....+.....+ .-.+-..|+|.++|++.
T Consensus 159 ~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly 238 (255)
T 3qqz_A 159 HISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY 238 (255)
T ss_dssp EEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE
T ss_pred eeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEE
Confidence 1111 1234567888887654 444444555554422 221111111111111 11355789999999865
Q ss_pred EEEecCcEEEE
Q 010256 502 ACAASNSLYMY 512 (514)
Q Consensus 502 ~~~~~~~~~i~ 512 (514)
+++-.|-++.|
T Consensus 239 IvsE~n~~y~f 249 (255)
T 3qqz_A 239 IVSEPNRFYRF 249 (255)
T ss_dssp EEETTTEEEEE
T ss_pred EEcCCceEEEE
Confidence 56445555554
No 268
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.17 E-value=0.00021 Score=71.53 Aligned_cols=307 Identities=12% Similarity=0.029 Sum_probs=152.1
Q ss_pred cEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCc
Q 010256 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (514)
Q Consensus 127 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (514)
..+++++.++.|.-+|..+|+..-........... ...+.......+.. .+..+ +.++.++.
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~v------------~v~~~dg~ 128 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKA----RTSCCDAVNRGVAL--WGDKV------------YVGTLDGR 128 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGG----GGCTTCSCCCCCEE--EBTEE------------EEECTTSE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCcccc----ccccccCCccceEE--ECCEE------------EEEcCCCE
Confidence 36777888899999999999877666544221100 00000000001111 12222 55666777
Q ss_pred EEeceeeccccccccccccccccccCccCeEEEEECC--CCCEEEEe-c------CCeEEEEeccCCCceeeeecc--CC
Q 010256 207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-D------DLRINLWNLEISNQSFNIVDV--KP 275 (514)
Q Consensus 207 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~-~------d~~i~iwd~~~~~~~~~~~~~--~~ 275 (514)
+..+| ..+.+. +..+..........+.-.| .+..++.+ . ++.|..+|.++++...+.... .+
T Consensus 129 l~alD-~~tG~~------~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p 201 (668)
T 1kv9_A 129 LIALD-AKTGKA------IWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDP 201 (668)
T ss_dssp EEEEE-TTTCCE------EEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred EEEEE-CCCCCE------eeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCC
Confidence 77766 222111 1111000000000000011 13344444 3 589999999988766554211 11
Q ss_pred Cc-------------cc--------ccCCceEEEEEecCCCcEEEEEecCC-------------------eEEEEEcCCC
Q 010256 276 AN-------------ME--------DLTEVITSAEFHPTHCNMLAYSSSKG-------------------SIRLIDMRQS 315 (514)
Q Consensus 276 ~~-------------~~--------~~~~~i~~v~~~p~~~~~l~~~~~dg-------------------~i~~wd~~~~ 315 (514)
.. .. +.......+++.|+. .+++.++.++ .|..+|.+++
T Consensus 202 ~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG 280 (668)
T 1kv9_A 202 ALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG 280 (668)
T ss_dssp TSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC
T ss_pred CccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC
Confidence 00 00 111122357888887 6888887766 3999999999
Q ss_pred ccccccccceeccCCCCccceeeccccceeEEEEecCCC---EEEEEeC-CeEEEEEccCCCCceeeeeeccccc-ccc-
Q 010256 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR---HILSRDY-MTLKLWDINMDSGPVATFQVHEHLR-PKL- 389 (514)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~---~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~-~~~- 389 (514)
+..++.... .+... -+. ...+.....+..+|+ .++.++. |.++++|..+ ++.+.......... ..+
T Consensus 281 ~~~W~~~~~--~~~~w----d~~-~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~d 352 (668)
T 1kv9_A 281 KLAWHYQVT--PGDSW----DFT-ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN-GKLISAEKFGKVTWAEKVD 352 (668)
T ss_dssp CEEEEEESS--TTCCS----CCC-CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCCSEEEEC
T ss_pred ceeeEeecC--CCccc----ccc-CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCC-CCEeccccccccccccccc
Confidence 875432110 00000 000 001222233334665 5666655 9999999997 87775443222000 000
Q ss_pred ----c------cccccCC---------ccceeeEEEcCCCCEEEEE----------------------------------
Q 010256 390 ----C------DLYENDS---------IFDKFECCLSGDGGRVATG---------------------------------- 416 (514)
Q Consensus 390 ----~------~~~~~~~---------~~~v~~~~~s~~~~~l~s~---------------------------------- 416 (514)
. ..|.... ...-..++++|+..+++..
T Consensus 353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p 432 (668)
T 1kv9_A 353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP 432 (668)
T ss_dssp TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence 0 0000000 0000137888887766542
Q ss_pred --eCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEee
Q 010256 417 --SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK 469 (514)
Q Consensus 417 --~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~ 469 (514)
..+|.|+-||+.+++.. -..+.. .+.....+...+.+++.++.|+.++.++
T Consensus 433 ~~~~~g~l~A~D~~tG~~~-W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQKAA-WKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp GGGCEEEEEEEETTTTEEE-EEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCCccceEEEEeCCCCcEE-EEccCC-CCCcCceeEeCCCEEEEECCcccchhhh
Confidence 12478999999988543 233222 2233334445677888899999999943
No 269
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.15 E-value=0.00087 Score=67.16 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=49.0
Q ss_pred EEEEcC-CCCeEEEecCCC-----------eEEEEEecCCcccCCcccccccccccccCCccceeeeee-ccCCCccccc
Q 010256 40 AIEFDK-SGDHLATGDRGG-----------RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYL 106 (514)
Q Consensus 40 ~~~~s~-~g~~l~tg~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~ 106 (514)
++++.+ +|++++.|+.+. .+.+||..+++.. .+..+ ..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~---------------------~~~~~~~~~~------ 242 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS---------------------DRTVTVTKHD------ 242 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC---------------------CCEEEECSCC------
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEE---------------------eCcccCCCCC------
Confidence 566677 888888887542 5788888776643 00111 1111
Q ss_pred cccccccceeEEEEeeCCCCcEEEEee-CCCeEEEEEcCccEEEEEe
Q 010256 107 KSLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVF 152 (514)
Q Consensus 107 ~~~~~~~~v~~i~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~ 152 (514)
....++++ ..++.+++.|+ .+..+.+||..+++.....
T Consensus 243 ------~~~~~~~~--~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~ 281 (656)
T 1k3i_A 243 ------MFCPGISM--DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP 281 (656)
T ss_dssp ------CSSCEEEE--CTTSCEEEECSSSTTCEEEEEGGGTEEEECC
T ss_pred ------CccccccC--CCCCCEEEeCCCCCCceEEecCcCCceeECC
Confidence 12334555 45677888887 4568999999988766553
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.09 E-value=0.0023 Score=65.19 Aligned_cols=31 Identities=10% Similarity=-0.011 Sum_probs=24.8
Q ss_pred ceEEEEEc-CCCCeEEEecC-C----CeEEEEEecCC
Q 010256 37 IISAIEFD-KSGDHLATGDR-G----GRVVLFERTDT 67 (514)
Q Consensus 37 ~V~~~~~s-~~g~~l~tg~~-d----g~i~iw~~~~~ 67 (514)
.+...+|| |||++||.+.. + ..|+++|+.++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g 211 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDP 211 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCC
Confidence 67889999 99999986543 2 35999999877
No 271
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.07 E-value=0.0018 Score=63.38 Aligned_cols=170 Identities=14% Similarity=0.071 Sum_probs=88.6
Q ss_pred EEEEecCCCcEEEEEecC----------------CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 287 SAEFHPTHCNMLAYSSSK----------------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 287 ~v~~~p~~~~~l~~~~~d----------------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
.+++.+.. ..++.++.+ +.|..+|.++++..++.... .+... -+.....++. +...
T Consensus 239 ~~a~d~~~-g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~--~~d~~----d~~~~~~p~l-~~~~ 310 (571)
T 2ad6_A 239 WYAYDPKL-NLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKT--PHDEW----DFAGVNQMVL-TDQP 310 (571)
T ss_dssp CCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESS--TTCSS----CCCCCCCCEE-EEEE
T ss_pred eEEEcCCC-CeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCC--CCccc----ccccCCCCEE-Eecc
Confidence 35677765 466655532 35899999998875431110 00000 0000112222 2333
Q ss_pred cCCC---EEEEEeC-CeEEEEEccCCCCceeeeeecccc-----------ccc---------------cccccccCCccc
Q 010256 351 RNGR---HILSRDY-MTLKLWDINMDSGPVATFQVHEHL-----------RPK---------------LCDLYENDSIFD 400 (514)
Q Consensus 351 ~~g~---~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~-----------~~~---------------~~~~~~~~~~~~ 400 (514)
++|+ .++.++. |.+.++|..+ ++.+......... ... ++....... .
T Consensus 311 ~~G~~~~~v~~~~~~G~l~~lD~~t-G~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~--~ 387 (571)
T 2ad6_A 311 VNGKMTPLLSHIDRNGILYTLNREN-GNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFH--N 387 (571)
T ss_dssp ETTEEEEEEEEECTTSEEEEEETTT-CCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSS--C
T ss_pred cCCcEEEEEEEeCCCcEEEEEECCC-CCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCcccc--C
Confidence 5774 4555654 8999999987 7776655432200 000 000000000 0
Q ss_pred eeeEEEcCCCCEEEEEe-------------------------------------CCCcEEEEecCCCceeeeeecCCCcc
Q 010256 401 KFECCLSGDGGRVATGS-------------------------------------YSNLFRVFGCSEGSAESTTLEASKNP 443 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~-------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 443 (514)
-..++++|+..+++... .+|.|+.||+.+++.+ -..+.. .+
T Consensus 388 w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~-W~~~~~-~~ 465 (571)
T 2ad6_A 388 QGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK-WTKWEK-FA 465 (571)
T ss_dssp SCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE-EEEEES-SC
T ss_pred CCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEE-EEecCC-CC
Confidence 01578888887776653 3478999999988543 333221 12
Q ss_pred eeEEEECCCCCceeecCCCCeEEEee
Q 010256 444 MRRQVQTPSRPSRPLGSLSGVVRRVK 469 (514)
Q Consensus 444 v~~~~~~~~~~~l~s~s~d~~v~i~~ 469 (514)
+....+...+..+..++.|+.++.++
T Consensus 466 ~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 466 AWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp CCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred ccceeEEECCCEEEEEcCCCeEEEEE
Confidence 22222233456677788999999844
No 272
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.03 E-value=0.0087 Score=55.67 Aligned_cols=250 Identities=8% Similarity=-0.029 Sum_probs=132.3
Q ss_pred EEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcE
Q 010256 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (514)
Q Consensus 128 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 207 (514)
+|+.+. ...|+..++.......+.... . .+..++|.+.++.+ +++-...+.|
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~---------~-------~~~~l~~d~~~~~l-----------ywsD~~~~~I 136 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNL---------R-------NVVALDTEVASNRI-----------YWSDLSQRMI 136 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSC---------S-------CEEEEEEETTTTEE-----------EEEETTTTEE
T ss_pred eeEEec-cceeEEEccCCcceeEecccc---------C-------cceEEeeeeccCce-----------EEEecCCCeE
Confidence 444443 467888888766543332211 1 11267787765544 1333344556
Q ss_pred EeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCce
Q 010256 208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 285 (514)
Q Consensus 208 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 285 (514)
..++ +..... .................+++++.+..|..+ ..+.|.+.+++... ...++ .......
T Consensus 137 ~~~~-~~g~~~---~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-~~~l~-------~~~~~~P 204 (400)
T 3p5b_L 137 CSTQ-LDRAHG---VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF-------RENGSKP 204 (400)
T ss_dssp EEEE-C---------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-EEEEE-------ECSSCCE
T ss_pred EEEE-cccCCC---CCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc-eEEEE-------eCCCCCc
Confidence 6555 221100 000111112233457789999855555544 67899999987332 22221 1223457
Q ss_pred EEEEEecCCCcEEEEEec-CCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--C
Q 010256 286 TSAEFHPTHCNMLAYSSS-KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M 362 (514)
Q Consensus 286 ~~v~~~p~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~ 362 (514)
..|+++|.++.++.+-.. .+.|...++..... ..+- .........|++++++..|+.++. +
T Consensus 205 ~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~-----~~~~-----------~~~l~~P~glavd~~~~~lY~aD~~~~ 268 (400)
T 3p5b_L 205 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-----YSLV-----------TENIQWPNGITLDLLSGRLYWVDSKLH 268 (400)
T ss_dssp EEEEEETTTTEEEEEECSSSCCEEEEETTSCSC-----EEEE-----------CSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred ceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc-----EEEE-----------ECCCCceEEEEEEeCCCEEEEEECCCC
Confidence 899999976344444322 36888888865332 1111 111135788999998888877653 7
Q ss_pred eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCc
Q 010256 363 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKN 442 (514)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 442 (514)
.|..+|+. +.....+........ .-..+++. .+.++.+-...+.|..+|..+++.. .++.....
T Consensus 269 ~I~~~d~d--G~~~~~~~~~~~~l~------------~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~-~~i~~~~~ 332 (400)
T 3p5b_L 269 SISSIDVN--GGNRKTILEDEKRLA------------HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV-NLLAENLL 332 (400)
T ss_dssp EEEEEETT--SCCCEEEEECSSTTS------------SEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC-EEEECSCS
T ss_pred EEEEEeCC--CCccEEEEeCCCCCC------------CCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce-EEEecCCC
Confidence 89999986 333333322110000 01256663 3445556666788999997777544 34443333
Q ss_pred ceeEEEE
Q 010256 443 PMRRQVQ 449 (514)
Q Consensus 443 ~v~~~~~ 449 (514)
....+..
T Consensus 333 ~p~~i~v 339 (400)
T 3p5b_L 333 SPEDMVL 339 (400)
T ss_dssp CEEEEEE
T ss_pred CCceEEE
Confidence 3344433
No 273
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.02 E-value=0.0034 Score=59.02 Aligned_cols=268 Identities=9% Similarity=0.021 Sum_probs=133.7
Q ss_pred ceeEEEEeeC-CCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 114 KINKIRWCQS-ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 114 ~v~~i~~~~~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
.-..|+|.|. .++ .|+.+...+.|+.++..+++........ ..+..++++++|+.+
T Consensus 140 ~P~gvavd~~s~~g-~Lyv~D~~~~I~~id~~~g~v~~~~~~~----------------~~P~giavd~dG~ly------ 196 (433)
T 4hw6_A 140 NIWRMMFDPNSNYD-DLYWVGQRDAFRHVDFVNQYVDIKTTNI----------------GQCADVNFTLNGDMV------ 196 (433)
T ss_dssp CCCEEEECTTTTTC-EEEEECBTSCEEEEETTTTEEEEECCCC----------------SCEEEEEECTTCCEE------
T ss_pred CCceEEEccccCCC-EEEEEeCCCCEEEEECCCCEEEEeecCC----------------CCccEEEECCCCCEE------
Confidence 3568888542 234 4555443389999999888766553311 122378899999833
Q ss_pred CCCCcccCCCCC--CcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 193 ASNDSSFPPGGV--SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 193 ~~~~~~~~~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
++.... ..-.++. +. ........ .. ...-.....++++| ++.++++- .++.|+.+|..++....
T Consensus 197 ------Vad~~~~~~~~gv~~-~~-~~~~~~~~--~~--~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~ 264 (433)
T 4hw6_A 197 ------VVDDQSSDTNTGIYL-FT-RASGFTER--LS--LCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE 264 (433)
T ss_dssp ------EEECCSCTTSEEEEE-EC-GGGTTCCE--EE--EEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE
T ss_pred ------EEcCCCCcccceEEE-EE-CCCCeecc--cc--ccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE
Confidence 221111 0111111 10 01100000 00 01123456788999 67766666 78899999987544312
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCc-EEEEEecCCeEEEEEcCC--Cccccccccceecc-CCCCccc--eeecccc
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQ-EAPGTRS--FFTEIIA 342 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~-~l~~~~~dg~i~~wd~~~--~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~ 342 (514)
.+... +.......++|+|++ + ++++-...+.|+.+++.. +... ....+.+. ....... .....-.
T Consensus 265 ~~~~~------~~~~~~~~ia~dpdG-~~LYvad~~~~~I~~~~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~~ 335 (433)
T 4hw6_A 265 EEVMM------DTKGSNFHIVWHPTG-DWAYIIYNGKHCIYRVDYNRETGKLA--VPYIVCGQHSSPGWVDGMGTGARLW 335 (433)
T ss_dssp EEEEC------SCCSSCEEEEECTTS-SEEEEEETTTTEEEEEEBCTTTCCBC--CCEEEEECTTCCCCBCEEGGGSBCS
T ss_pred EEecc------CCCCCcccEEEeCCC-CEEEEEeCCCCEEEEEeCCCCCcccC--cEEEEEecCCCCccCCCcccceEEc
Confidence 22111 112223479999999 6 555555678999988753 2211 01112111 0000000 0001113
Q ss_pred ceeEEEE---------ecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccc--ccccccc-ccccCCccceeeEEEc-C
Q 010256 343 SISDIKF---------ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH--LRPKLCD-LYENDSIFDKFECCLS-G 408 (514)
Q Consensus 343 ~i~~~~~---------s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~v~~~~~s-~ 408 (514)
....+++ .++|.+.++-.. +.|+.++.. + .+.++.+... ....... ......+..-..++++ +
T Consensus 336 ~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~--G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~ 412 (433)
T 4hw6_A 336 GPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE--G-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMK 412 (433)
T ss_dssp SEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT--S-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETT
T ss_pred CCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC--C-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECC
Confidence 4677899 667766666444 788888742 4 3344433211 0000000 0000111122378999 6
Q ss_pred CCCEEEEEeCCCcEEEEecC
Q 010256 409 DGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 409 ~~~~l~s~~~dg~i~iwd~~ 428 (514)
+|.++++=...++|+.++++
T Consensus 413 ~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 413 RKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTEEEEEEGGGTEEEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEecC
Confidence 67666665667788887764
No 274
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.95 E-value=0.0045 Score=60.65 Aligned_cols=85 Identities=11% Similarity=0.063 Sum_probs=47.5
Q ss_pred EEEEecCCCcEEEEEecC----------------CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 287 SAEFHPTHCNMLAYSSSK----------------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 287 ~v~~~p~~~~~l~~~~~d----------------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
.+++.+.. .+++.++.+ +.|.-+|.++++..+..... .+.. --+.....++. +...
T Consensus 245 ~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~--~~d~----wd~d~~~~p~l-~d~~ 316 (599)
T 1w6s_A 245 WYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT--PHDE----WDYAGVNVMML-SEQK 316 (599)
T ss_dssp CCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS--TTCS----SCCCCCCCCEE-EEEE
T ss_pred ceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC--CCcc----ccccCCCccEE-Eecc
Confidence 45667776 577777655 37899999999875431110 0000 00000111222 2222
Q ss_pred -cCC---CEEEEEeC-CeEEEEEccCCCCceeeee
Q 010256 351 -RNG---RHILSRDY-MTLKLWDINMDSGPVATFQ 380 (514)
Q Consensus 351 -~~g---~~l~~~~~-~~i~iwd~~~~~~~~~~~~ 380 (514)
.+| +.++.++. |.+.++|..+ ++++....
T Consensus 317 ~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~lw~~~ 350 (599)
T 1w6s_A 317 DKDGKARKLLTHPDRNGIVYTLDRTD-GALVSANK 350 (599)
T ss_dssp CTTSCEEEEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred ccCCcEEEEEEEECCCcEEEEEECCC-CCEeeccc
Confidence 467 45555654 9999999987 77766554
No 275
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.95 E-value=0.0047 Score=55.82 Aligned_cols=197 Identities=11% Similarity=0.053 Sum_probs=109.9
Q ss_pred CeEEEEECCCCCEEEEe-------------cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEec--CCC-cEE
Q 010256 235 HINSISNNSDGETFISA-------------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THC-NML 298 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p--~~~-~~l 298 (514)
...++...|+|..++++ .+|.|.++|.++.......+......+....-....+.+.+ ++. +++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34567778888777765 58999999987432222211111000122334677888766 342 244
Q ss_pred EEEec--CCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe----C-----------
Q 010256 299 AYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----Y----------- 361 (514)
Q Consensus 299 ~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~----------- 361 (514)
++-.. +..|.+|++.........+..++... ....+++.+.++|.+.++.. +
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~-----------~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~ 199 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL-----------LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLG 199 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTT-----------CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCC-----------CCCCceEEEeCCCCEEecCCcEeCCcccccchhhcc
Confidence 44444 56788888866433222233333321 14688999999999888753 1
Q ss_pred -CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe-CCCcEEEEecCCCceee--eee
Q 010256 362 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAES--TTL 437 (514)
Q Consensus 362 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~--~~~ 437 (514)
..=.+|.+.. ++.......-.. -..++|+||++.|..+. ..++|+.|++.....+. ..+
T Consensus 200 ~~~g~vyr~d~-~~~~~~~~~l~~----------------pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~ 262 (355)
T 3sre_A 200 LAWSFVTYYSP-NDVRVVAEGFDF----------------ANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL 262 (355)
T ss_dssp CCCEEEEEECT-TCCEEEEEEESS----------------EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred CCccEEEEEEC-CeEEEeecCCcc----------------cCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE
Confidence 1233444442 221111111111 12799999998777654 56899999986432221 233
Q ss_pred cCCCcceeEEEECC-CCCceeecC
Q 010256 438 EASKNPMRRQVQTP-SRPSRPLGS 460 (514)
Q Consensus 438 ~~~~~~v~~~~~~~-~~~~l~s~s 460 (514)
......-.+++.+ +|.+.+++.
T Consensus 263 -~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 263 -SFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp -ECSSEEEEEEECTTTCCEEEEEE
T ss_pred -eCCCCCceEEEeCCCCcEEEEec
Confidence 2234556788888 588777554
No 276
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=0.0049 Score=57.97 Aligned_cols=159 Identities=9% Similarity=0.092 Sum_probs=89.6
Q ss_pred ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
....|++.|. ++..|+++...+.|+.+|+..+.+..+.... ..+..++++++|+.+.
T Consensus 138 ~P~~lavdp~-~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~----------------~~P~~ia~d~~G~~ly------ 194 (430)
T 3tc9_A 138 GAVWLSFDPK-NHNHLYLVGEQHPTRLIDFEKEYVSTVYSGL----------------SKVRTICWTHEADSMI------ 194 (430)
T ss_dssp CCCEEEEETT-EEEEEEEEEBTEEEEEEETTTTEEEEEECCC----------------SCEEEEEECTTSSEEE------
T ss_pred CCCEEEECCC-CCCeEEEEeCCCcEEEEECCCCEEEEEecCC----------------CCcceEEEeCCCCEEE------
Confidence 4567888531 2335666655588999999887765543311 1222788999998551
Q ss_pred CCCcccCCCCCCcE--EeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 194 SNDSSFPPGGVSSL--RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 194 ~~~~~~~~~~~~~i--~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
++....+.+ .++-+.. +..... ...+ . .......++++| ++.++++- .++.|..++...... ..
T Consensus 195 -----vad~~~~~~~~~v~~~~~--~g~~~~--~~~l-~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~-~~ 262 (430)
T 3tc9_A 195 -----ITNDQNNNDRPNNYILTR--ESGFKV--ITEL-T-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET-TP 262 (430)
T ss_dssp -----EEECCSCTTSEEEEEEEG--GGTSCS--EEEE-E-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE-EE
T ss_pred -----EEeCCCCcccceEEEEeC--CCceee--eeee-c-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE-EE
Confidence 222211111 1111011 111100 0011 1 123456788999 67777666 788999999874432 11
Q ss_pred eeccCCCcccccCCceEEEEEecCCCc-EEEEEecCCeEEEEEcCC
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQ 314 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~-~l~~~~~dg~i~~wd~~~ 314 (514)
+. ... .......++|+|++ + ++++-...+.|..++...
T Consensus 263 ~~-----~~~-~~~~P~gia~~pdG-~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 263 LF-----TIQ-DSGWEFHIQFHPSG-NYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EE-----ECS-SSSCCEEEEECTTS-SEEEEEETTTTEEEEEEEET
T ss_pred EE-----EcC-CCCcceeEEEcCCC-CEEEEEECCCCEEEEEeCCc
Confidence 11 111 12456899999999 6 555556688999988764
No 277
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.92 E-value=0.011 Score=55.75 Aligned_cols=224 Identities=12% Similarity=0.010 Sum_probs=109.2
Q ss_pred cCeEEEEE-------CCCCCEEEEe-cCC-------eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEE
Q 010256 234 YHINSISN-------NSDGETFISA-DDL-------RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML 298 (514)
Q Consensus 234 ~~v~~~~~-------~~~~~~l~s~-~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l 298 (514)
.....++| +++++.|+.+ ..+ .|.+++...........+. ..+... .....++++|++..++
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~--~~v~~~-~~p~giavdp~~g~LY 262 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDI--QLIAAY-KQCNGATIHPINGELY 262 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCE--EEEEEE-SCCCCEEECTTTCCEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccc--eeeccC-CCceEEEEcCCCCeEE
Confidence 34678889 9999866665 322 2556654321111100000 011111 2345778899654777
Q ss_pred EEEecCCeEEEEEcC-------CCccccccccceeccCCCCcccee-eccccceeEEEEecCCCEEEEEe-C-CeEEEEE
Q 010256 299 AYSSSKGSIRLIDMR-------QSALCDTHSKLFEEQEAPGTRSFF-TEIIASISDIKFARNGRHILSRD-Y-MTLKLWD 368 (514)
Q Consensus 299 ~~~~~dg~i~~wd~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~iwd 368 (514)
++-..++.|..+|+. ++... .+....... .....+ .+.......++|+|+|++|+.++ . ..|+.++
T Consensus 263 vtd~~~g~V~r~d~~~~~~~~~tg~~~-tp~~~~~~g---~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid 338 (496)
T 3kya_A 263 FNSYEKGQVFRLDLVDYFKTIKNGGSW-DPIVKNNPN---TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSD 338 (496)
T ss_dssp EEETTTTEEEEECHHHHHHHHHTTCCC-CCBGGGCTT---TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEECCCCEEEEEecccccccccCceee-ccccccccc---ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEe
Confidence 777788899999997 44320 000000000 000000 01113467899999999766654 3 8888877
Q ss_pred ccCCCCce---eeeeeccccccccccccccCCcccee-eEEEc-------CCCCEEEEEeCCCcEEEEecCCCceeeeee
Q 010256 369 INMDSGPV---ATFQVHEHLRPKLCDLYENDSIFDKF-ECCLS-------GDGGRVATGSYSNLFRVFGCSEGSAESTTL 437 (514)
Q Consensus 369 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s-------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 437 (514)
.......+ .++-+..+.............+..-. .++.. ++|.++++=....+|+.++. ++ .. .++
T Consensus 339 ~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~v-~Ti 415 (496)
T 3kya_A 339 YDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-IV-STY 415 (496)
T ss_dssp EETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-BE-EEE
T ss_pred cCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CC-CE-EEE
Confidence 65312121 23322211000000000000111111 23443 45666666667788999984 44 22 233
Q ss_pred cCC------------------------CcceeEEEECCC-CCceeecCCCCeEEE
Q 010256 438 EAS------------------------KNPMRRQVQTPS-RPSRPLGSLSGVVRR 467 (514)
Q Consensus 438 ~~~------------------------~~~v~~~~~~~~-~~~l~s~s~d~~v~i 467 (514)
-+. ......+++.++ +.++++=+.+..||.
T Consensus 416 aG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrk 470 (496)
T 3kya_A 416 AGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRT 470 (496)
T ss_dssp EESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred ecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEE
Confidence 221 123456777775 666666566666665
No 278
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.89 E-value=0.013 Score=52.89 Aligned_cols=231 Identities=10% Similarity=0.073 Sum_probs=121.4
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
..+.++.+++ +..++.+..+.|.. ...+......+.. ...+...+..+.+.+++ .+++.+ .++.| |-..
T Consensus 80 ~~~~~i~~~~-~~~~~~g~~g~i~~--S~DgG~tW~~~~~----~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v--~~S~ 148 (327)
T 2xbg_A 80 YRFNSVSFQG-NEGWIVGEPPIMLH--TTDGGQSWSQIPL----DPKLPGSPRLIKALGNG-SAEMIT-NVGAI--YRTK 148 (327)
T ss_dssp CEEEEEEEET-TEEEEEEETTEEEE--ESSTTSSCEECCC----CTTCSSCEEEEEEEETT-EEEEEE-TTCCE--EEES
T ss_pred ccEEEEEecC-CeEEEEECCCeEEE--ECCCCCCceECcc----ccCCCCCeEEEEEECCC-CEEEEe-CCccE--EEEc
Confidence 4678888876 55556566675543 2323333322110 01123457788887776 566655 45543 2222
Q ss_pred C-CccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEE-EEccCCCCceeeeeecccccccccc
Q 010256 314 Q-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKL-WDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 314 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
. ++. +.... ......+..+++.|++++++.+..+.+.. .|-. +..-..+.....
T Consensus 149 DgG~t-------W~~~~--------~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g--G~tW~~~~~~~~------- 204 (327)
T 2xbg_A 149 DSGKN-------WQALV--------QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG--QTAWEPHNRTTS------- 204 (327)
T ss_dssp STTSS-------EEEEE--------CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT--CSSCEEEECCSS-------
T ss_pred CCCCC-------CEEee--------cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC--CCceeECCCCCC-------
Confidence 2 221 11110 11124688899999999988887655433 3321 222222211110
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec-C---CCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-A---SKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~---~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
..+..+++.+++++++. +.+|.+++.+...++. -..+. . +...+..+.+.+++.+++++. ++.+..
T Consensus 205 -------~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~t-W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~~ 274 (327)
T 2xbg_A 205 -------RRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSEN-WGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALLC 274 (327)
T ss_dssp -------SCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEE-ECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEEE
T ss_pred -------CccceeEECCCCCEEEE-eCCceEEEecCCCCCe-eEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEEE
Confidence 11337888999886654 5578877764221211 11111 1 223577888988887777665 676655
Q ss_pred -eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEE
Q 010256 468 -VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYM 511 (514)
Q Consensus 468 -~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i 511 (514)
.++...+.. +. ........+.++.|.++++.++++.+..++-
T Consensus 275 S~DgG~tW~~-~~-~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~ 317 (327)
T 2xbg_A 275 SQDGGQTWQQ-DV-DVKKVPSNFYKILFFSPDQGFILGQKGILLR 317 (327)
T ss_dssp ESSTTSSCEE-CG-GGTTSSSCCCEEEEEETTEEEEECSTTEEEE
T ss_pred eCCCCcccEE-cC-ccCCCCCCeEEEEEECCCceEEEcCCceEEE
Confidence 454444421 11 0011235678899987777666665554443
No 279
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.88 E-value=0.042 Score=58.31 Aligned_cols=33 Identities=6% Similarity=-0.006 Sum_probs=27.4
Q ss_pred ccceEEEEEcCC------CCeEEEecC-CCeEEEEEecCC
Q 010256 35 VDIISAIEFDKS------GDHLATGDR-GGRVVLFERTDT 67 (514)
Q Consensus 35 ~~~V~~~~~s~~------g~~l~tg~~-dg~i~iw~~~~~ 67 (514)
.+.|+|+++.|. ++++|.|.. |++|+|+++.+.
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l 592 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF 592 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence 467999999873 369999997 999999998743
No 280
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.84 E-value=0.015 Score=58.94 Aligned_cols=160 Identities=11% Similarity=-0.003 Sum_probs=94.9
Q ss_pred cCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC-CeEEEE
Q 010256 234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLI 310 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g~i~~w 310 (514)
.....|++++.+..|..+ ..+.|.+.++... ....++ .........|+++|.++.++++-... +.|...
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~-~~~~l~-------~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~ 542 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLF-------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 542 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-SEEEEE-------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCCC-eEEEEE-------eCCCCCcceEEEecCCCCEEEecCCCCCeEEEE
Confidence 456789999887666655 6889999998733 222221 12234578999999863444443333 788888
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeec-ccccc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVH-EHLRP 387 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~-~~~~~ 387 (514)
++..... ..+- .........|++++.+..|+.++. ..|...++. +.....+... ....
T Consensus 543 ~~dG~~~-----~~lv-----------~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d--G~~~~~v~~~~~~l~- 603 (791)
T 3m0c_C 543 GLNGVDI-----YSLV-----------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA- 603 (791)
T ss_dssp ETTSCCE-----EEEE-----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTTS-
T ss_pred ecCCCce-----EEEE-----------eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC--CCceEEEecCCCccC-
Confidence 8865432 1111 111146788999988777777643 788888886 4443333221 1110
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
.-+.+++.. ++++++-...+.|...+..+++..
T Consensus 604 ------------~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 604 ------------HPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp ------------SEEEEEEET-TEEEEEETTTTEEEEEETTTCCCC
T ss_pred ------------CCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcce
Confidence 012566532 334444456678888887777444
No 281
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.81 E-value=0.017 Score=52.70 Aligned_cols=113 Identities=14% Similarity=0.106 Sum_probs=63.0
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecC---CCcEEEEEecC-----C
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSK-----G 305 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~---~~~~l~~~~~d-----g 305 (514)
.....++|.|+|+++++-.++.|++++ . +. ...+.... ...........++++|+ ++.++++-... +
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~-g~-~~~~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR-E-GR-LSTYAELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE-T-TE-EEEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE-C-CC-ccEeecce--EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 346799999999977766669999998 3 32 11111111 12223456899999998 42455544433 6
Q ss_pred eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE
Q 010256 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (514)
Q Consensus 306 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 358 (514)
.|..|+...+... .....+...... .-..| ....++|.|||.+.++
T Consensus 106 ~v~r~~~~~~~~~-~~~~l~~~~p~~----~~~~h--~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 106 QVVRLRHLGERGV-LDRVVLDGIPAR----PHGLH--SGGRIAFGPDGMLYVT 151 (352)
T ss_dssp EEEEEEECSSCEE-EEEEEEEEECCC----TTCCC--CCCCEEECTTSCEEEE
T ss_pred EEEEEEeCCCCcC-ceEEEEEeCCCC----CCCCc--CCceEEECCCCCEEEE
Confidence 7778887643211 001111100000 00112 2367999999987776
No 282
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.81 E-value=0.016 Score=51.26 Aligned_cols=214 Identities=9% Similarity=0.028 Sum_probs=115.5
Q ss_pred eEEEEECCCCCE-EEEe-cCCeEEEEeccCCCceeeeeccCCCccc--c-cCCceEEEEE---ecCCCcEEEEEec----
Q 010256 236 INSISNNSDGET-FISA-DDLRINLWNLEISNQSFNIVDVKPANME--D-LTEVITSAEF---HPTHCNMLAYSSS---- 303 (514)
Q Consensus 236 v~~~~~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~-~~~~i~~v~~---~p~~~~~l~~~~~---- 303 (514)
..++.|++.... +++. ..++|..||...+. ...+ .+. .+. + ....+..+.| .|++ +++++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~-~~~~-~~~--~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af 89 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS-HFNV-VID--GASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSF 89 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCC-EEEE-CCT--TTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTT
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCe-EEEE-ecC--CccccCCCcceeeEEEEeccCCCC-cEEEEEcccccc
Confidence 446889875444 4455 79999999987332 2222 111 111 1 1124579999 6887 77775442
Q ss_pred ---------CCeEEEEEcC---CCccccccccceeccCCCCccceeec-cccceeEEEEecCCCEEEEEeCCeEEEEEcc
Q 010256 304 ---------KGSIRLIDMR---QSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (514)
Q Consensus 304 ---------dg~i~~wd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~ 370 (514)
+..+..||+. +++... ...............+ -......++..++|+..++++.+.=.||.+.
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~----~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVW----SVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS 165 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSE----EEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEE----EecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence 6789999998 665431 1111000000000000 0124789999999998888654312255554
Q ss_pred CCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec--CC---Cccee
Q 010256 371 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE--AS---KNPMR 445 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~---~~~v~ 445 (514)
..++.+..+....... ........++++|+|+.|++....|.+..+|+.........+. +. .....
T Consensus 166 pdG~~~~~~~~~~~~~---------~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~d 236 (334)
T 2p9w_A 166 ADGKTVSTFAWESGNG---------GQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTE 236 (334)
T ss_dssp TTSCCEEEEEECCCCS---------SSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEE
T ss_pred CCCCEEeeeeecCCCc---------ccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcc
Confidence 4355444332222110 0011123899999999888887799999999884322001122 21 11223
Q ss_pred EE-EECCCCCc-eeecCCCCeEEE
Q 010256 446 RQ-VQTPSRPS-RPLGSLSGVVRR 467 (514)
Q Consensus 446 ~~-~~~~~~~~-l~s~s~d~~v~i 467 (514)
.+ ....+++. |++.+..+.+.+
T Consensus 237 gilp~~~~G~vllV~~~~~~~~~l 260 (334)
T 2p9w_A 237 KIVTVPVGNESVLVGARAPYAISF 260 (334)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEE
T ss_pred cccccccCCEEEEEEcCCCCEEEE
Confidence 32 33456776 555556666555
No 283
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.80 E-value=0.017 Score=53.40 Aligned_cols=192 Identities=9% Similarity=-0.062 Sum_probs=112.7
Q ss_pred cCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
..+..++|++.+..|..+ ..+.|..+++..... ..++ .........+++.+.+++++++-...+.|.+.+
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~-------~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~ 187 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV-------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 187 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEE-------CSSCSCCCCEEEETTTTEEEEEETTTTEEEECB
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEE-------eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEe
Confidence 346789999866655554 688999999874432 1211 111234567888886646666666678888888
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--C-CeEEEEEccCCCCceeeeeeccccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLWDINMDSGPVATFQVHEHLRPK 388 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~-~~i~iwd~~~~~~~~~~~~~~~~~~~~ 388 (514)
+..... ..+. .........++++|.+..|+..+ . +.|..+++. +.....+......
T Consensus 188 ~dg~~~-----~~l~-----------~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~~~--- 246 (386)
T 3v65_B 188 LDGAHR-----KVLL-----------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIADTHLF--- 246 (386)
T ss_dssp TTSCSC-----EEEE-----------CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEECSSCS---
T ss_pred CCCCce-----EEee-----------cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--CCCcEEEEECCCC---
Confidence 764321 1111 11113578899999777776654 3 677777776 4333333211100
Q ss_pred cccccccCCccceeeEEEcCCCCEEEEE-eCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 389 LCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.-..++|+|++..|..+ +..+.|..+++... .....+.........+++ ..+.++.+-...+.|..
T Consensus 247 -----------~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~ 313 (386)
T 3v65_B 247 -----------WPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINS 313 (386)
T ss_dssp -----------CEEEEEEEGGGTEEEEEETTTTEEEEECTTSC-SCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEE
T ss_pred -----------CeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC-eeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEE
Confidence 01279999877666554 45678999998643 322333333445566777 34455555555666655
No 284
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.72 E-value=0.026 Score=51.36 Aligned_cols=189 Identities=8% Similarity=-0.032 Sum_probs=108.7
Q ss_pred eEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCC
Q 010256 236 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 315 (514)
..|.+..+ ...|+.+....|+..++...... .+ .. ....+..++|++.+..++.+-...+.|..+++...
T Consensus 36 ~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~-~~-------~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~ 105 (349)
T 3v64_C 36 RSCKALGP-EPVLLFANRIDIRQVLPHRSEYT-LL-------LN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS 105 (349)
T ss_dssp SCEEESSS-CCEEEEECBSCEEEECTTSCCEE-EE-------EC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred Cccccccc-CceeEeecccceEEEeCCCCeeE-Ee-------ec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCC
Confidence 34555555 34555565556888888643221 11 11 23447899999876355555556788999998765
Q ss_pred ccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--CCeEEEEEccCCCCceeeeeecccccccccccc
Q 010256 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 393 (514)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
... .+... .......+++.+.+..|+..+ .+.|.+.++.. .....+.... ..
T Consensus 106 ~~~-----~~~~~-----------~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l~~~~-l~------- 159 (349)
T 3v64_C 106 NVE-----EVVST-----------GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKVLLWQS-LE------- 159 (349)
T ss_dssp SCE-----EEECS-----------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECTT-CS-------
T ss_pred Cce-----EEEeC-----------CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC--CceEEEEeCC-CC-------
Confidence 421 11100 112457899998666665543 38899999873 3333322111 00
Q ss_pred ccCCccceeeEEEcCCCCEEEEEe-CC-CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCce-eecCCCCeEEE
Q 010256 394 ENDSIFDKFECCLSGDGGRVATGS-YS-NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR-PLGSLSGVVRR 467 (514)
Q Consensus 394 ~~~~~~~v~~~~~s~~~~~l~s~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~s~d~~v~i 467 (514)
.-..++++|.+..|+... .. +.|+.+++... .....+.........++++|++..| .+-+..+.|..
T Consensus 160 ------~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~ 229 (349)
T 3v64_C 160 ------KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER 229 (349)
T ss_dssp ------CEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred ------CcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEE
Confidence 012799999666555443 44 78888887643 2222223334556789999866544 44445566666
No 285
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.71 E-value=0.033 Score=52.27 Aligned_cols=255 Identities=9% Similarity=-0.003 Sum_probs=127.6
Q ss_pred cceEEEEEcCC--CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 36 DIISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 36 ~~V~~~~~s~~--g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
.....|+|+|+ +..|..+...+.|+.++..++... .+.... .
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~------------------------~~~~~~------------~ 182 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD------------------------IKTTNI------------G 182 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE------------------------EECCCC------------S
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE------------------------EeecCC------------C
Confidence 45678999995 445555554488999997665531 111111 4
Q ss_pred ceeEEEEeeCCCCcEEEEeeCC---Ce-EEEEEcCccEE--EEEeeccCCCccccCCcceecccccCCceeecc-CCCcc
Q 010256 114 KINKIRWCQSANSALYLLSTND---KT-IKLWKVQEKKV--KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGCG 186 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d---~~-i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~l 186 (514)
....|++ +++|.++++.... .. +...+...+.. ..... ...+..+++.| +|...
T Consensus 183 ~P~giav--d~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~-----------------~~~P~giavd~~~G~ly 243 (433)
T 4hw6_A 183 QCADVNF--TLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCN-----------------ARGAKTCAVHPQNGKIY 243 (433)
T ss_dssp CEEEEEE--CTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEE-----------------CSSBCCCEECTTTCCEE
T ss_pred CccEEEE--CCCCCEEEEcCCCCcccceEEEEECCCCeeccccccc-----------------cCCCCEEEEeCCCCeEE
Confidence 5788999 5677744443211 11 22222211110 00001 12233678888 55544
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCC
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEIS 264 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~ 264 (514)
++-..++.|..++ ...... .. ..+..+....-..++|+|+++.|..+ ..+.|+.++....
T Consensus 244 ------------v~d~~~~~V~~~d-~~~g~~---~~--~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~ 305 (433)
T 4hw6_A 244 ------------YTRYHHAMISSYD-PATGTL---TE--EEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRE 305 (433)
T ss_dssp ------------ECBTTCSEEEEEC-TTTCCE---EE--EEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTT
T ss_pred ------------EEECCCCEEEEEE-CCCCeE---EE--EEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence 4555566777666 211110 00 00011112233479999999966555 6789999887532
Q ss_pred Ccee---eeeccCC--Ccc------cccCCceEEEEE---------ecCCCcEEEEEecCCeEEEEEcCCCccccccccc
Q 010256 265 NQSF---NIVDVKP--ANM------EDLTEVITSAEF---------HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (514)
Q Consensus 265 ~~~~---~~~~~~~--~~~------~~~~~~i~~v~~---------~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 324 (514)
...+ ..+.... ..+ ...-.....+++ .+++ +++++-...+.|+.++. ++.. .+
T Consensus 306 ~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~-~G~v-----~t 378 (433)
T 4hw6_A 306 TGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTP-EGRV-----TT 378 (433)
T ss_dssp TCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEEEEETTTTEEEEECT-TSEE-----EE
T ss_pred CcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEEEEECCCCEEEEECC-CCCE-----EE
Confidence 1110 0110000 000 001234678999 6666 67776667789999985 4432 22
Q ss_pred eeccCC---CCcc---ceeeccccceeEEEEe-cCCCEEEEEeC-CeEEEEEcc
Q 010256 325 FEEQEA---PGTR---SFFTEIIASISDIKFA-RNGRHILSRDY-MTLKLWDIN 370 (514)
Q Consensus 325 ~~~~~~---~~~~---~~~~~~~~~i~~~~~s-~~g~~l~~~~~-~~i~iwd~~ 370 (514)
+-+... .... ......-.....|+++ ++|.++++-.. ++|+.++++
T Consensus 379 ~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 379 YAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 221110 0000 0000112357889999 56655555333 788887764
No 286
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.63 E-value=0.00061 Score=68.40 Aligned_cols=175 Identities=11% Similarity=-0.016 Sum_probs=92.9
Q ss_pred CeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC-CeEEEEE
Q 010256 235 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLID 311 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g~i~~wd 311 (514)
....|++.+.+..|..+ ..+.|.++++.... ...++ .........++++|.++.++++-... +.|..++
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~-~~~l~-------~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~ 525 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF-------REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 525 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC-EEEEC-------CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCC
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCc-eEEEE-------eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEe
Confidence 34578888655444444 67889999987332 22221 11123457788998763444443222 6777777
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeecccccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKL 389 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (514)
+..... +.+.. ........|+|+|++..|+.++. +.|..+++.. .....+........
T Consensus 526 ~dG~~~-----~~l~~-----------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG--~~~~~~~~~~~~~~-- 585 (699)
T 1n7d_A 526 LNGVDI-----YSLVT-----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTILEDEKRLA-- 585 (699)
T ss_dssp SSSCCC-----CEESC-----------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS--SCCEEECCCSSSCS--
T ss_pred CCCCCe-----eEEEe-----------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC--CceEEEEecCCcCC--
Confidence 654221 11100 01134678999998777766543 7899998863 32222221100000
Q ss_pred ccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEE
Q 010256 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 449 (514)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 449 (514)
. -..+++..+ .++++....+.|..++..+++.. .++.........+++
T Consensus 586 -------~---P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~-~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 586 -------H---PFSLAVFED-KVFWTDIINEAIFSANRLTGSDV-NLLAENLLSPEDMVL 633 (699)
T ss_dssp -------S---CCCCEEETT-EEEEECSTTTCEEEEETTTEEEE-ECCCTTCSSCCCCCB
T ss_pred -------C---ceEeEEECC-EEEEEeCCCCeEEEEEccCCCce-EEeecCCCCCcEEEE
Confidence 0 115666543 44555556789999998776433 344332223334443
No 287
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.60 E-value=0.0068 Score=57.00 Aligned_cols=148 Identities=11% Similarity=0.030 Sum_probs=89.5
Q ss_pred ceEEEEEec-CCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-
Q 010256 284 VITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY- 361 (514)
Q Consensus 284 ~i~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~- 361 (514)
....++++| ++ ..|+.+...+.|+.+|+..+... .+.. .......++|+++|++|+.++.
T Consensus 138 ~P~~lavdp~~~-g~Lyv~d~~~~I~~id~~~~~v~-----~~~~------------~~~~P~~ia~d~~G~~lyvad~~ 199 (430)
T 3tc9_A 138 GAVWLSFDPKNH-NHLYLVGEQHPTRLIDFEKEYVS-----TVYS------------GLSKVRTICWTHEADSMIITNDQ 199 (430)
T ss_dssp CCCEEEEETTEE-EEEEEEEBTEEEEEEETTTTEEE-----EEEC------------CCSCEEEEEECTTSSEEEEEECC
T ss_pred CCCEEEECCCCC-CeEEEEeCCCcEEEEECCCCEEE-----EEec------------CCCCcceEEEeCCCCEEEEEeCC
Confidence 457889998 34 35555555588999998776531 1111 1145789999999996665432
Q ss_pred -C----eEEEEEccCCCCce--eeeeeccccccccccccccCCccceeeEEEcC-CCCEEEEEeCCCcEEEEecCCCcee
Q 010256 362 -M----TLKLWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 362 -~----~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
+ .+.+++.. +... ..+..... ...++++| +|.++++-..+++|+.++...+...
T Consensus 200 ~~~~~~~v~~~~~~--g~~~~~~~l~~~~~----------------p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~ 261 (430)
T 3tc9_A 200 NNNDRPNNYILTRE--SGFKVITELTKGQN----------------CNGAETHPINGELYFNSWNAGQVFRYDFTTQETT 261 (430)
T ss_dssp SCTTSEEEEEEEGG--GTSCSEEEEEECSS----------------CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE
T ss_pred CCcccceEEEEeCC--CceeeeeeeccCCC----------------ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 1 33334433 3222 22221111 11789999 7777776667789999998865321
Q ss_pred eeeecCCCcceeEEEECCCCC-ceeecCCCCeEEE
Q 010256 434 STTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 467 (514)
Q Consensus 434 ~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~v~i 467 (514)
.....+.....+.++++|+++ ++++-...+.|..
T Consensus 262 ~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~ 296 (430)
T 3tc9_A 262 PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR 296 (430)
T ss_dssp EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence 111112224467899999999 4555556667766
No 288
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.58 E-value=0.034 Score=49.08 Aligned_cols=175 Identities=9% Similarity=0.066 Sum_probs=99.5
Q ss_pred CCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE---ecCCCEEEE
Q 010256 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF---ARNGRHILS 358 (514)
Q Consensus 282 ~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---s~~g~~l~~ 358 (514)
.....+++|++..+.++++.-..++|..||...+.... + .++.-..+. .....+..+.| .|+++++++
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~--~-~~~~~s~~g------~~~~~~sGl~~~~~D~~grL~vv 82 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN--V-VIDGASSNG------DGEQQMSGLSLLTHDNSKRLFAV 82 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE--E-CCTTTCCSS------CCSEEEEEEEESSSSSCCEEEEE
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE--E-ecCCccccC------CCcceeeEEEEeccCCCCcEEEE
Confidence 34455789998763444444479999999987554311 1 121100000 00013578999 688888886
Q ss_pred Ee--------------CCeEEEEEcc---CCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC-C
Q 010256 359 RD--------------YMTLKLWDIN---MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-N 420 (514)
Q Consensus 359 ~~--------------~~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g 420 (514)
.. +..|..||+. + ++.+.......... ...... .........++..++|+..++++.. +
T Consensus 83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~t-g~~~~~~dL~~~~~-~~~~~~-g~~~~~~nDvavD~~GnaYVt~s~~~~ 159 (334)
T 2p9w_A 83 MKNAKSFNFADQSSHGASSFHSFNLPLSEN-SKPVWSVNFEKVQD-EFEKKA-GKRPFGVVQSAQDRDGNSYVAFALGMP 159 (334)
T ss_dssp EEETTTTCTTSCCSSSCCEEEEEESSCCTT-CCCSEEEESHHHHH-HHHHHH-SSCCEEEEEEEECTTSCEEEEEEESSC
T ss_pred EcccccccccccccCCCCEEEEEcCCcCCC-CCEEEEecCccccc-cccccc-cccccCCceeEECCCCCEEEeCCCCCC
Confidence 43 4678999988 6 55554443211000 000000 0001113389999999999998887 7
Q ss_pred cEEEEecCCCceee-eeecC----CCcceeEEEECCCCCceeecCCCCeEEEee
Q 010256 421 LFRVFGCSEGSAES-TTLEA----SKNPMRRQVQTPSRPSRPLGSLSGVVRRVK 469 (514)
Q Consensus 421 ~i~iwd~~~~~~~~-~~~~~----~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~ 469 (514)
.|...+.... ... ..+.. ..-..+.++++|+++.|+....++.+...+
T Consensus 160 ~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD 212 (334)
T 2p9w_A 160 AIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD 212 (334)
T ss_dssp EEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred eEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence 7777666532 221 11111 112256899999999887776688777643
No 289
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.53 E-value=0.045 Score=48.98 Aligned_cols=180 Identities=7% Similarity=-0.045 Sum_probs=103.9
Q ss_pred EEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCC---cccccccc
Q 010256 247 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS---ALCDTHSK 323 (514)
Q Consensus 247 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~---~~~~~~~~ 323 (514)
+|+.+....|+..|+...... .++ .....+..++|++.+..++++-..++.|..+++... ... ..
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~-~~~--------~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~---~~ 70 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYT-SLI--------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY---DT 70 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCE-EEE--------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C---EE
T ss_pred EEEEECCCeEEEEECCCcceE-ehh--------cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc---EE
Confidence 455565567889998854432 221 123457899999876356666666789999998752 111 01
Q ss_pred ceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--CCeEEEEEccCCCCceeeeeeccccccccccccccCCccce
Q 010256 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (514)
.+. ........+++.+.+..|+..+ .+.|.++++. +.....+...... .-
T Consensus 71 ~~~------------~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~--g~~~~~~~~~~~~--------------~P 122 (316)
T 1ijq_A 71 VIS------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGS--------------KP 122 (316)
T ss_dssp EEC------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEEEEEECTTC--------------CE
T ss_pred EEe------------CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC--CCceEEEEECCCC--------------Cc
Confidence 111 0112457899987666665543 3899999986 3333333211100 01
Q ss_pred eeEEEcCCCCEEEEEeC-C-CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCce-eecCCCCeEEE
Q 010256 402 FECCLSGDGGRVATGSY-S-NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR-PLGSLSGVVRR 467 (514)
Q Consensus 402 ~~~~~s~~~~~l~s~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~s~d~~v~i 467 (514)
..++++|.+..|+.+.. . +.|...++... ...............+++++++..| .+-+..+.|..
T Consensus 123 ~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~ 190 (316)
T 1ijq_A 123 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 190 (316)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred ceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEE
Confidence 27899997766655443 2 68888887633 2222223344567789999876654 44455667776
No 290
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.49 E-value=0.09 Score=51.47 Aligned_cols=77 Identities=10% Similarity=0.138 Sum_probs=41.3
Q ss_pred CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEee---CCCCCccccCCcccccccceEEEEEc
Q 010256 419 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK---GADNSALDANGNAFDFSMKLLHLAWH 495 (514)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~---~~~~~~~~~~~~~~~~~~~v~~~~~s 495 (514)
+|.|.-||+.+++.+ -..+... ++..-.....+.+++.++.|+.++.++ |..+++..+.. ...-.-+.|.
T Consensus 465 ~G~l~A~D~~tG~~~-W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~-----g~~a~P~~y~ 537 (582)
T 1flg_A 465 VGSLRAMDPVSGKVV-WEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS-----GIVSPPITWE 537 (582)
T ss_dssp SEEEEEECTTTCCEE-EEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-----CCCSCCEEEE
T ss_pred cceEEEEECCCCCEE-EEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC-----CcccCceEEE
Confidence 578999999988543 2222221 222211222466777799999999843 34444222211 1111236667
Q ss_pred CCCCEEE
Q 010256 496 PSENSIA 502 (514)
Q Consensus 496 pd~~~l~ 502 (514)
.+|+..+
T Consensus 538 ~~G~qYv 544 (582)
T 1flg_A 538 QDGEQYL 544 (582)
T ss_dssp ETTEEEE
T ss_pred ECCEEEE
Confidence 8887544
No 291
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.37 E-value=0.13 Score=50.67 Aligned_cols=370 Identities=11% Similarity=-0.012 Sum_probs=179.4
Q ss_pred ccceEEEEEcCCCCeEEEec-CCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGD-RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
......|+|++.+..|..+. ..+.|..+++.+.... ...+...- .
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~----------------------~~v~~~~~------------~ 84 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV----------------------QNVVVSGL------------L 84 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C----------------------EEEECSSC------------S
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce----------------------EEEEeCCC------------C
Confidence 45578899998766666554 4677888887543210 01111110 3
Q ss_pred ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
....|++.+ ..+.++++-...+.|.+.++.......+..... ..+..+++.|.+..+
T Consensus 85 ~P~GlAvD~-~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l---------------~~P~~Iavdp~~g~l------- 141 (619)
T 3s94_A 85 SPDGLACDW-LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL---------------DQPRAIALDPSSGFM------- 141 (619)
T ss_dssp CEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------------SCCCCEEEETTTTEE-------
T ss_pred CcCeEEEEe-cCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCC---------------CCCceEEEecCCCeE-------
Confidence 467777742 134455555677899999987654333322111 123377887765544
Q ss_pred CCCcccCCCC--CCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceee
Q 010256 194 SNDSSFPPGG--VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 194 ~~~~~~~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~ 269 (514)
+.... .+.|...+ .+. .....+....-...+.|++++++..|..+ ..+.|...|++.. ....
T Consensus 142 -----y~tD~g~~~~I~r~~----~dG----~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~-~~~~ 207 (619)
T 3s94_A 142 -----YWTDWGEVPKIERAG----MDG----SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQA 207 (619)
T ss_dssp -----EEEECSSSCEEEEEE----TTS----CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC-EEC-
T ss_pred -----EEeccCCCCEEEEEE----CCC----CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC-ccEE
Confidence 22221 23333222 111 11111111223457899999987777776 5778888888732 2211
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccc---------ccceeccCCCCccceeecc
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH---------SKLFEEQEAPGTRSFFTEI 340 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 340 (514)
+. .+......++++..+ .++++-...+.|...|..+++..... +..+.....|.....-...
T Consensus 208 ~~-------~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ 278 (619)
T 3s94_A 208 VV-------KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGID 278 (619)
T ss_dssp ---------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTT
T ss_pred EE-------eCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCC
Confidence 11 111122346666544 45555556788999998776532110 0111110001000000000
Q ss_pred ccceeEEE-----------EecCC---------------CEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccc
Q 010256 341 IASISDIK-----------FARNG---------------RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 394 (514)
Q Consensus 341 ~~~i~~~~-----------~s~~g---------------~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (514)
.+....++ ..|.| .+|+.+..+.|+..++.........+..
T Consensus 279 ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~------------- 345 (619)
T 3s94_A 279 NGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQL------------- 345 (619)
T ss_dssp GGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCC-------------
T ss_pred CCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEec-------------
Confidence 00011111 11221 1344444455665565531111111110
Q ss_pred cCCccceeeEEEcCCCCEEEEE-eCCCcEEEEecCCCceeeeeecCCCcceeEEEECC-CCCceeecCCCCeEEEe--eC
Q 010256 395 NDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP-SRPSRPLGSLSGVVRRV--KG 470 (514)
Q Consensus 395 ~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~v~i~--~~ 470 (514)
..+.....++|++.+..|+.+ ...+.|+.+++..... ...+.........+++.+ .+++..+-+..+.|.+. +|
T Consensus 346 -~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~-~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G 423 (619)
T 3s94_A 346 -EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS-QFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG 423 (619)
T ss_dssp -SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred -cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc-EEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCC
Confidence 011123478999866655544 4578899998875422 233443445667888886 45566666677788873 23
Q ss_pred CCCCccccCCcccccccceEEEEEcCCCCEEEEE
Q 010256 471 ADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~ 504 (514)
.... .+.. +--...+.|++.|....|..+
T Consensus 424 ~~~~--~l~~---~~l~~P~~iavdp~~G~ly~t 452 (619)
T 3s94_A 424 TMRK--ILIS---EDLEEPRAIVLDPMVGYMYWT 452 (619)
T ss_dssp CSCE--EEEC---TTCCSEEEEEEETTTTEEEEE
T ss_pred CeEE--EEEE---CCCCCeeeEEEEcCCCcEEEe
Confidence 2111 1110 123567889999874444433
No 292
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.36 E-value=0.09 Score=53.30 Aligned_cols=183 Identities=7% Similarity=-0.070 Sum_probs=105.2
Q ss_pred EEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccccee
Q 010256 247 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 247 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
+|+.+....|+..++...... .+ ......+..++|++....++++-...+.|+.+++............
T Consensus 397 ~Ll~an~~~Ir~i~l~~~~~~-~l--------~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~v-- 465 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRSEYT-SL--------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-- 465 (791)
T ss_dssp EEEEECBSSEEEECTTSCCCE-EE--------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE--
T ss_pred ccccccccceeEeeccCCcce-ee--------ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEE--
Confidence 444455566777777643321 11 1234567899999866356666666788988888653210000111
Q ss_pred ccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeE
Q 010256 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (514)
+.........|++.+.++.|+..+. +.|.+.++. +.....+...... ....|
T Consensus 466 ----------i~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld--G~~~~~l~~~~l~--------------~P~gI 519 (791)
T 3m0c_C 466 ----------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGS--------------KPRAI 519 (791)
T ss_dssp ----------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEEEEEECTTC--------------CEEEE
T ss_pred ----------EecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC--CCeEEEEEeCCCC--------------CcceE
Confidence 1111245678999988877776543 899999987 4444444321110 01279
Q ss_pred EEcCCCCEEEEEeC-C-CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeec-CCCCeEEE
Q 010256 405 CLSGDGGRVATGSY-S-NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRR 467 (514)
Q Consensus 405 ~~s~~~~~l~s~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-s~d~~v~i 467 (514)
+++|.+.+|+.... . ++|...++... .....+.........+++.+.+..|..+ .....|..
T Consensus 520 aVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~ 584 (791)
T 3m0c_C 520 VVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 584 (791)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEE
Confidence 99998666665543 2 67888888643 3333444445677889999766554444 44556666
No 293
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.34 E-value=0.08 Score=47.59 Aligned_cols=236 Identities=11% Similarity=0.050 Sum_probs=122.6
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
..+.+|.|.+.+..++++..+.|. ...+ +....+.+.. ........+.+|.|.+ + ..++. +..+.|.. ...
T Consensus 36 ~~~~~v~~~~~~~~~~~G~~g~i~-~s~D-gG~tW~~~~~---~~~~~~~~~~~i~~~~-~-~~~~~-g~~g~i~~-S~D 106 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLVGVNATLM-ETRD-GGQTWEPRTL---VLDHSDYRFNSVSFQG-N-EGWIV-GEPPIMLH-TTD 106 (327)
T ss_dssp SCEEEEEESSSSCEEEEETTTEEE-EESS-TTSSCEECCC---CCSCCCCEEEEEEEET-T-EEEEE-EETTEEEE-ESS
T ss_pred CcEEEEEECCCCcEEEEcCCCeEE-EeCC-CCCCCeECCC---CCCCCCccEEEEEecC-C-eEEEE-ECCCeEEE-ECC
Confidence 468899998888888877777653 3333 3333222110 1111244688999987 4 45554 45564432 222
Q ss_pred CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeecccccccccccc
Q 010256 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 393 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
.++. +.....+ ..+.+.+..+.+.++++.++++.++.| |.....++.-........
T Consensus 107 gG~t-------W~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~g~v--~~S~DgG~tW~~~~~~~~--------- 162 (327)
T 2xbg_A 107 GGQS-------WSQIPLD------PKLPGSPRLIKALGNGSAEMITNVGAI--YRTKDSGKNWQALVQEAI--------- 162 (327)
T ss_dssp TTSS-------CEECCCC------TTCSSCEEEEEEEETTEEEEEETTCCE--EEESSTTSSEEEEECSCC---------
T ss_pred CCCC-------ceECccc------cCCCCCeEEEEEECCCCEEEEeCCccE--EEEcCCCCCCEEeecCCC---------
Confidence 2322 1111100 001134667887777877777766543 332222333322221100
Q ss_pred ccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEe--eCC
Q 010256 394 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV--KGA 471 (514)
Q Consensus 394 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~--~~~ 471 (514)
. .+..+++.+++.+++.+...+..+-+|-...... ..-......+..+.+.+++.+++.+ .+|.+++. ++.
T Consensus 163 --~---~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~-~~~~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G 235 (327)
T 2xbg_A 163 --G---VMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWE-PHNRTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNS 235 (327)
T ss_dssp --C---CEEEEEECTTSCEEEEETTSSEEEEECTTCSSCE-EEECCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEE
T ss_pred --c---ceEEEEEcCCCcEEEEECCCcEEEEeCCCCCcee-ECCCCCCCccceeEECCCCCEEEEe-CCceEEEecCCCC
Confidence 0 1347899999988877654333333442111111 1122345567888899988766554 56777663 212
Q ss_pred CCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEE
Q 010256 472 DNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 510 (514)
Q Consensus 472 ~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~ 510 (514)
..+. .+....+.....+..+++.+++.+++++....++
T Consensus 236 ~tW~-~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~ 273 (327)
T 2xbg_A 236 ENWG-ELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALL 273 (327)
T ss_dssp EEEC-CCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEE
T ss_pred CeeE-eccCCcccCCcceEEEEecCCCEEEEEeCCCeEE
Confidence 2211 0111101123458899999998888887765553
No 294
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.33 E-value=0.088 Score=47.86 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=62.3
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecC---CCcEEEEEec---C---
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSS---K--- 304 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~---~~~~l~~~~~---d--- 304 (514)
.....++|.|+|+++++-.++.|++++.. +. ..+..+. ...........|+++|+ ++.++++-+. +
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~-G~--~~~~~~~--v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISPS-GK--KLVASFD--VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECSS-CE--EEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeCC-Cc--eEeeccc--eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 45678999999987776666999999743 33 1121111 11222456889999997 4245554432 3
Q ss_pred -CeEEEEEcCCCcc-ccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE
Q 010256 305 -GSIRLIDMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (514)
Q Consensus 305 -g~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 358 (514)
..|..|+...... .......+..-.. -..| ....++|.|||.+.++
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~------~~~h--~~~~l~~~pDG~Lyvt 151 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPG------AYIH--NGGRIRFGPDGMLYIT 151 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEEC------CSSC--CCCCEEECTTSCEEEE
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCC------CCCc--CCceEEECCCCcEEEE
Confidence 5677777664310 0000001110000 0112 3467999999987777
No 295
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.30 E-value=0.086 Score=47.08 Aligned_cols=192 Identities=6% Similarity=-0.084 Sum_probs=110.8
Q ss_pred CeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 235 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
.+.+++|++.+..|..+ ..+.|..+++........+ ....-.....+++.+.+++++++-...+.|.++++
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~-------~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~ 108 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV-------VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL 108 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE-------EEECCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE-------EcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEEC
Confidence 45688999865555554 6889999998754321111 11112345688999765466666667789999998
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe---CCeEEEEEccCCCCceeeeeecccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKL 389 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (514)
..... ..+.. ........+++.|.+..|+..+ .+.|...++. +.....+.... .
T Consensus 109 dG~~~-----~~l~~-----------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~-l---- 165 (318)
T 3sov_A 109 DGSLR-----KVLFW-----------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFIIINSE-I---- 165 (318)
T ss_dssp TSCSC-----EEEEC-----------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--SCSCEEEECSS-C----
T ss_pred CCCcE-----EEEEe-----------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--CCCeEEEEECC-C----
Confidence 65321 11111 1113568899999766666544 2677777776 44333332111 0
Q ss_pred ccccccCCccceeeEEEcCCCCEEEEE-eCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 390 CDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
..-..+++++++..|..+ +..+.|..+|+... .......+.......+++..+ .++.+-...+.|..
T Consensus 166 ---------~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~glav~~~-~lywtd~~~~~V~~ 233 (318)
T 3sov_A 166 ---------YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILA 233 (318)
T ss_dssp ---------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSCCSCEEEEEEETT-EEEEEETTTTEEEE
T ss_pred ---------CCccEEEEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEecCCCCCceEEEEeCC-EEEEEecCCCeEEE
Confidence 001279999977666655 45678999998743 222333333444556666433 34444444555554
No 296
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.06 E-value=0.19 Score=46.52 Aligned_cols=184 Identities=7% Similarity=-0.075 Sum_probs=106.4
Q ss_pred CEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccce
Q 010256 246 ETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (514)
Q Consensus 246 ~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 325 (514)
.+|+.+....|+..++...... .+ ......+..++|++.+..++.+-...+.|+.+++........ ...+
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~-~~--------~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~-~~~~ 153 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYT-SL--------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-YDTV 153 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCE-EE--------ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CC-CEEE
T ss_pred ceeEEeccceeEEEccCCccee-Ee--------ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCc-ceEE
Confidence 4555566678999998744322 11 123456789999987635555555678899888865321000 0111
Q ss_pred eccCCCCccceeeccccceeEEEEecCCCEEEEEe-C-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceee
Q 010256 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
+.........+++.+.+..|+..+ . +.|.+.+++ +.....+...... ....
T Consensus 154 -----------~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~--g~~~~~l~~~~~~--------------~P~~ 206 (400)
T 3p5b_L 154 -----------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGS--------------KPRA 206 (400)
T ss_dssp -----------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT--TCSEEEEEECSSC--------------CEEE
T ss_pred -----------EeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC--CCceEEEEeCCCC--------------Ccce
Confidence 111113577899998666666543 3 889888887 3433333221110 0127
Q ss_pred EEEcCCCCEEEEEeC--CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeec-CCCCeEEE
Q 010256 404 CCLSGDGGRVATGSY--SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRR 467 (514)
Q Consensus 404 ~~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-s~d~~v~i 467 (514)
++++|.+.+|+.... .+.|+..++... .....+.........+++++++..|..+ +....|..
T Consensus 207 iavdp~~g~ly~td~~~~~~I~~~~~dG~-~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~ 272 (400)
T 3p5b_L 207 IVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 272 (400)
T ss_dssp EEEETTTTEEEEEECSSSCCEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEecccCeEEEEeCCCCCEEEEEeCCCC-ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEE
Confidence 999997766665542 378888888643 3223334444667899999876655444 45566666
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.00 E-value=0.32 Score=48.06 Aligned_cols=197 Identities=11% Similarity=-0.004 Sum_probs=106.6
Q ss_pred cceEEEEEcCCCCeEEEe-cCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 36 DIISAIEFDKSGDHLATG-DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
..+..|+|++.+..|... ..++.|..+++...... ..+.... ..
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~-----------------------~v~~~g~------------~~ 81 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE-----------------------HVVEFGL------------DY 81 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----------------------EEECSSC------------SC
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE-----------------------EEEeCCC------------CC
Confidence 467899999966655544 46788888887643211 0111000 22
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
...|++.+ ..+.++++-...+.|.+.++.......+..... ..+..+++.|....+
T Consensus 82 P~GlAvD~-~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l---------------~~P~~iavdp~~G~l-------- 137 (628)
T 4a0p_A 82 PEGMAVDW-LGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDL---------------DSPRALALDPAEGFM-------- 137 (628)
T ss_dssp CCEEEEET-TTTEEEEEETTTTEEEEEETTSTTCEEEECSSC---------------CCEEEEEEETTTTEE--------
T ss_pred cceEEEEe-CCCEEEEEECCCCEEEEEecCCCcEEEEEeCCC---------------CCcccEEEccCCCeE--------
Confidence 45566632 234455555667889998887654322221111 122367777755444
Q ss_pred CCcccCCC--CCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeee
Q 010256 195 NDSSFPPG--GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 195 ~~~~~~~~--~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~ 270 (514)
+... ..+.|...+ .+.. ....+ ...-.....|++++++..|..+ ..+.|...|+..... ++
T Consensus 138 ----Y~tD~g~~~~I~r~~----~dG~----~~~~l-~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v 202 (628)
T 4a0p_A 138 ----YWTEWGGKPKIDRAA----MDGS----ERTTL-VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EV 202 (628)
T ss_dssp ----EEEECSSSCEEEEEE----TTSC----SCEEE-ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EE
T ss_pred ----EEeCCCCCCEEEEEe----CCCC----ceEEE-ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EE
Confidence 2222 133444333 1111 11111 1123567899999988877777 578899999874333 22
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCC
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 315 (514)
+ ........++++.. + .++++-...+.|...|..++
T Consensus 203 ~-------~~~l~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 203 I-------ADDLPHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp E-------EECCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTC
T ss_pred e-------eccCCCceEEEEEC-C-EEEEecCCCCEEEEEECCCC
Confidence 1 11223355777765 3 55565555777777776544
No 298
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.99 E-value=0.18 Score=45.01 Aligned_cols=150 Identities=7% Similarity=0.129 Sum_probs=82.6
Q ss_pred CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEE--ecCCCc-EEEEEecCCeEEEEEcC---CCcccccccccee
Q 010256 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHCN-MLAYSSSKGSIRLIDMR---QSALCDTHSKLFE 326 (514)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~--~p~~~~-~l~~~~~dg~i~~wd~~---~~~~~~~~~~~~~ 326 (514)
+++|.+|++......+..+......+......+..+++ +|.... ++++...+|.+..|++. .+....+.++.|.
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 68999997742222222211000000011155667777 675423 67778888999999984 3333333345555
Q ss_pred ccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCC----CceeeeeeccccccccccccccCCccce
Q 010256 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDS----GPVATFQVHEHLRPKLCDLYENDSIFDK 401 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (514)
.. +.+-.+...+....|+.+.. ..|..++.+... +.+..+. ..... .++
T Consensus 178 lg-------------sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l~------------aDv 231 (355)
T 3amr_A 178 MN-------------SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHLT------------RDI 231 (355)
T ss_dssp CS-------------SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSBC------------SCE
T ss_pred CC-------------CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCccc------------cCc
Confidence 43 35788999988888888865 445555544211 1222221 11111 123
Q ss_pred eeEEE--cCCCC-EEEEEe-CCCcEEEEecC
Q 010256 402 FECCL--SGDGG-RVATGS-YSNLFRVFGCS 428 (514)
Q Consensus 402 ~~~~~--s~~~~-~l~s~~-~dg~i~iwd~~ 428 (514)
..+++ .++++ ||++++ .++++.+||..
T Consensus 232 EGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 232 EGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 35666 56666 665555 67799999997
No 299
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.98 E-value=0.067 Score=50.58 Aligned_cols=155 Identities=12% Similarity=-0.004 Sum_probs=90.4
Q ss_pred ceEEEEEecC-CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE-------ecCCCE
Q 010256 284 VITSAEFHPT-HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF-------ARNGRH 355 (514)
Q Consensus 284 ~i~~v~~~p~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------s~~g~~ 355 (514)
....|+|+|. +.+++++-...+.|++.|+.++.+. .+-... .........++| +++|+.
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-----~l~~~~--------~~~~~~p~~ia~~~~~~~~d~~G~~ 206 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-----SPLNIN--------TIPTNRIRSIAFNKKIEGYADEAEY 206 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-----EEECCT--------TSSCSBEEEEEECCCBTTTBCTTCE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-----EEEccC--------ccccCCCcEEEEeecccccCCCCCE
Confidence 4678999983 4255555555578999998876642 111100 001135889999 999997
Q ss_pred EEEEeC-C-------eEEEEEccCCCCce-----eeeeeccccccccccccccCCccceeeEEEcCC-CCEEEEEeCCCc
Q 010256 356 ILSRDY-M-------TLKLWDINMDSGPV-----ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNL 421 (514)
Q Consensus 356 l~~~~~-~-------~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~ 421 (514)
|+.+++ + .|.+++....+... ..+..... -..++++|+ +.++++-..++.
T Consensus 207 lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~----------------p~giavdp~~g~LYvtd~~~g~ 270 (496)
T 3kya_A 207 MIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQ----------------CNGATIHPINGELYFNSYEKGQ 270 (496)
T ss_dssp EEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESC----------------CCCEEECTTTCCEEEEETTTTE
T ss_pred EEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCC----------------ceEEEEcCCCCeEEEEECCCCE
Confidence 776654 2 25566533212221 12211111 117899995 555556667788
Q ss_pred EEEEecC-------CCce-----------eeeeec-CCCcceeEEEECCCCCc-eeecCCCCeEEE
Q 010256 422 FRVFGCS-------EGSA-----------ESTTLE-ASKNPMRRQVQTPSRPS-RPLGSLSGVVRR 467 (514)
Q Consensus 422 i~iwd~~-------~~~~-----------~~~~~~-~~~~~v~~~~~~~~~~~-l~s~s~d~~v~i 467 (514)
|+.+|+. ++.. ....+. +.....+.++++|++++ +++-+....|+.
T Consensus 271 V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~k 336 (496)
T 3kya_A 271 VFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMR 336 (496)
T ss_dssp EEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence 9999987 4432 001111 22345678999999994 444455666666
No 300
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.97 E-value=0.11 Score=47.46 Aligned_cols=165 Identities=12% Similarity=0.122 Sum_probs=98.1
Q ss_pred EECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccc--cCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcc
Q 010256 240 SNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (514)
Q Consensus 240 ~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~ 317 (514)
....+|..++.+.++.||.-++.... .++.+. ... .-..+..+..+|+| .+||..+ +..|.|-.+..+..
T Consensus 27 ~~~~n~t~i~~a~~n~iR~~~i~~~~-~Yk~L~-----~~~~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~ 98 (452)
T 3pbp_A 27 FSSQNGTRIVFIQDNIIRWYNVLTDS-LYHSLN-----FSRHLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYS 98 (452)
T ss_dssp EEETTTTEEEEEETTEEEEEETTTCS-SCEEEE-----CTTTCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCS
T ss_pred EEEcCCCEEEEEECCEEEEEECCCCC-cceEEe-----cCcccccCceeEEEECCCC-CEEEEec-CCeEEEEEecCccc
Confidence 34567888888888999998887433 343321 221 12257789999999 7888765 55889988874321
Q ss_pred cccc--------ccceeccCCCCccceeeccccceeEEEEecC---CCEEEE-EeCCeEEEEEccCC-CCceeeeeeccc
Q 010256 318 CDTH--------SKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILS-RDYMTLKLWDINMD-SGPVATFQVHEH 384 (514)
Q Consensus 318 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---g~~l~~-~~~~~i~iwd~~~~-~~~~~~~~~~~~ 384 (514)
.... .+.+..... ......+|..+.|+|- +..|++ -+|+.|++||+... .++. .+....
T Consensus 99 ~~~~~~~~~~~q~~ty~l~~~------~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~- 170 (452)
T 3pbp_A 99 NVEDVSIQDAFQIFHYSIDEE------EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPN- 170 (452)
T ss_dssp CCCCHHHHHTTEEEEEEGGGC------C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCC-
T ss_pred cCcccccccccceeEEEcCCc------ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccc-
Confidence 1110 112222110 0012467999999994 445666 56799999999852 2233 332111
Q ss_pred cccccccccccCCccceeeEEEcCCCCEEEEEe--CCCcEEEE
Q 010256 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGS--YSNLFRVF 425 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iw 425 (514)
..+-......+|.+++|..++-.|...+ .+|.|+-.
T Consensus 171 -----~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 171 -----NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp -----SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred -----cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 0111122334567999999887666644 77877643
No 301
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.92 E-value=0.21 Score=44.61 Aligned_cols=157 Identities=11% Similarity=-0.008 Sum_probs=91.7
Q ss_pred eEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEEc
Q 010256 236 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDM 312 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~~wd~ 312 (514)
...+++.+.+..|..+ ..+.|.+++++... ...+ ..........+++.|.++.++.+-. ..+.|...++
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l-------~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 152 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVL-------FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM 152 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEE-------ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEET
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-EEEE-------EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEc
Confidence 4578888755554444 67899999987332 2111 1123455789999997634444432 2578888887
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeeccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
..... ..+-. ........++++|++..|+.++. +.|..+|+. +.....+......
T Consensus 153 dG~~~-----~~~~~-----------~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~----- 209 (318)
T 3sov_A 153 DGSSR-----FIIIN-----------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGSLP----- 209 (318)
T ss_dssp TSCSC-----EEEEC-----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSCCS-----
T ss_pred CCCCe-----EEEEE-----------CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC--CCceEEEecCCCC-----
Confidence 64321 11110 01135688999998877777643 889999986 3333333211100
Q ss_pred cccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
. -..+++. .+.++.+-...+.|..++..+++..
T Consensus 210 ------~---P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 210 ------H---PFALTLF-EDILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp ------C---EEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred ------C---ceEEEEe-CCEEEEEecCCCeEEEEECCCCCce
Confidence 0 1266765 3345555556788999998777543
No 302
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.77 E-value=0.016 Score=58.29 Aligned_cols=193 Identities=10% Similarity=-0.007 Sum_probs=103.5
Q ss_pred cCeEEEEECCCCCEEEEe--cCCeEEEEeccCC---CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010256 234 YHINSISNNSDGETFISA--DDLRINLWNLEIS---NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
..+..++|++.+..|..+ ..+.|+.+++... .....+ +.........|++.+.+.+++++-...+.|.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~-------i~~~~~~P~glavD~~~g~LY~tD~~~~~I~ 478 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 478 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCB-------CCSCC--CCCEECCCSSSBCEECCTTTSCEE
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEE-------EeCCCCCcceEEEEeeCCcEEEEeccCCeEE
Confidence 345688999877777766 5788999998741 111111 1111223456788765536666556678899
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--C-CeEEEEEccCCCCceeeeeecccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLWDINMDSGPVATFQVHEHL 385 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~-~~i~iwd~~~~~~~~~~~~~~~~~ 385 (514)
++++..... ..+-.. .......++++|.+.+|+..+ . +.|..+++. +.....+......
T Consensus 479 v~d~dg~~~-----~~l~~~-----------~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d--G~~~~~l~~~~l~ 540 (699)
T 1n7d_A 479 VADTKGVKR-----KTLFRE-----------QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVTENIQ 540 (699)
T ss_dssp EEBSSSCCE-----EEECCC-----------SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS--SCCCCEESCSSCS
T ss_pred EEecCCCce-----EEEEeC-----------CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC--CCCeeEEEeCCCC
Confidence 998865432 111100 012456788998766555533 2 677777765 3322222111000
Q ss_pred ccccccccccCCccceeeEEEcCCCCEEE-EEeCCCcEEEEecCCCceeeeeec--CCCcceeEEEECCCCCceeecCCC
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~s~d 462 (514)
.-..++|+|++..|+ +-+..+.|..+++... .....+. ........+++..+ .++.+....
T Consensus 541 --------------~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~ 604 (699)
T 1n7d_A 541 --------------WPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFED-KVFWTDIIN 604 (699)
T ss_dssp --------------SCCCEEECTTTCCEEEEETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETT-EEEEECSTT
T ss_pred --------------CccEEEEeccCCEEEEEecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECC-EEEEEeCCC
Confidence 011799998765544 4456678999998643 2222222 11222334555443 344444455
Q ss_pred CeEEE
Q 010256 463 GVVRR 467 (514)
Q Consensus 463 ~~v~i 467 (514)
+.|..
T Consensus 605 ~~V~~ 609 (699)
T 1n7d_A 605 EAIFS 609 (699)
T ss_dssp TCEEE
T ss_pred CeEEE
Confidence 55555
No 303
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.75 E-value=0.27 Score=44.37 Aligned_cols=156 Identities=7% Similarity=0.117 Sum_probs=87.4
Q ss_pred ccCeEEEEECC--CCC-EEEEe--c--CCeEEEEeccCCCceeeeeccCCCcccc-cCCceEEEEEecCCCcEEEEEec-
Q 010256 233 DYHINSISNNS--DGE-TFISA--D--DLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSS- 303 (514)
Q Consensus 233 ~~~v~~~~~~~--~~~-~l~s~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~~- 303 (514)
......+.+.+ ++. +|..+ . +.+|.+|+++........+. ++.+ .-...+.+++.++| .++++...
T Consensus 111 ~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~----~~~g~~~~~pND~~v~~~G-~fyvt~~~~ 185 (355)
T 3sre_A 111 SFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK----TIRHKLLPSVNDIVAVGPE-HFYATNDHY 185 (355)
T ss_dssp GCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE----EECCTTCSSEEEEEEEETT-EEEEEESCS
T ss_pred ceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe----ccccCCCCCCceEEEeCCC-CEEecCCcE
Confidence 34667777755 454 34443 2 67888988875443333221 1221 23457899999998 66665431
Q ss_pred ----------------CCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEE
Q 010256 304 ----------------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLK 365 (514)
Q Consensus 304 ----------------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~ 365 (514)
.|.|..+|. ++. +. +.......+.++|+||++.|+.++. +.|.
T Consensus 186 ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-----~~------------~~~~l~~pNGia~spDg~~lYvadt~~~~I~ 246 (355)
T 3sre_A 186 FIDPYLKSWEMHLGLAWSFVTYYSP--NDV-----RV------------VAEGFDFANGINISPDGKYVYIAELLAHKIH 246 (355)
T ss_dssp CSSHHHHHHHHHTTCCCEEEEEECT--TCC-----EE------------EEEEESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred eCCcccccchhhccCCccEEEEEEC--CeE-----EE------------eecCCcccCcceECCCCCEEEEEeCCCCeEE
Confidence 133333333 211 11 1111245788999999998888753 8999
Q ss_pred EEEccCCCCce--eeeeeccccccccccccccCCccceeeEEEcC-CCCEEEEEeCC-CcEEEEecC
Q 010256 366 LWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYS-NLFRVFGCS 428 (514)
Q Consensus 366 iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d-g~i~iwd~~ 428 (514)
.|++...+... ..+.. ... .-.+++.+ +|++.+++..+ ++|..|+..
T Consensus 247 ~~~~~~~g~l~~~~~~~~-~g~---------------PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 247 VYEKHANWTLTPLRVLSF-DTL---------------VDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEECTTSCEEEEEEEEC-SSE---------------EEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred EEEECCCCcEecCEEEeC-CCC---------------CceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 99997433321 11111 010 01688898 59988766544 345445443
No 304
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.69 E-value=0.32 Score=43.42 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=65.1
Q ss_pred cCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCC-ceeeeeccCCC
Q 010256 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN-QSFNIVDVKPA 276 (514)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~-~~~~~~~~~~~ 276 (514)
++...++.+..|++..........+..+.+.. .+.+..+...+....|..+ ++.-|..++.+-.. ....++..-
T Consensus 147 fV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~-- 222 (355)
T 3amr_A 147 MVTGKEGEFEQYELKADKNGYISGKKVRAFKM--NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRA-- 222 (355)
T ss_dssp EEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEB--
T ss_pred EEECCCCeEEEEEEEeCCCCcccceEEEEecC--CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEe--
Confidence 77777899999995443333334444455422 3568888899888888888 77666666644221 011111100
Q ss_pred cccccCCceEEEEEe--cCCCcEEEEEe-cCCeEEEEEcC
Q 010256 277 NMEDLTEVITSAEFH--PTHCNMLAYSS-SKGSIRLIDMR 313 (514)
Q Consensus 277 ~~~~~~~~i~~v~~~--p~~~~~l~~~~-~dg~i~~wd~~ 313 (514)
........+..|++. +++..+|++++ .+..+.+||..
T Consensus 223 ~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 223 DGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp SSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred cCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 112223457788774 55422455555 57799999986
No 305
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.66 E-value=0.91 Score=48.33 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=31.6
Q ss_pred ccceeEEEEeeCCC----CcEEEEeeC-CCeEEEEEcCccEEEEEeec
Q 010256 112 EEKINKIRWCQSAN----SALYLLSTN-DKTIKLWKVQEKKVKKVFDW 154 (514)
Q Consensus 112 ~~~v~~i~~~~~~~----~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~ 154 (514)
+..|.|+++.|.++ +.+++.|.. |++++|+++.+.+......+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L 600 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML 600 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEEC
Confidence 36699999865443 468899986 99999999987665544443
No 306
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.48 E-value=0.08 Score=43.50 Aligned_cols=141 Identities=4% Similarity=-0.137 Sum_probs=80.7
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEEccCCCCce-----eeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe
Q 010256 343 SISDIKFARNGRHILSRDYMTLKLWDINMDSGPV-----ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (514)
.+..++|+|+|.+.++ .++.+.-.+..+ .... .+..+..... . --.+.|.|+|.+.++
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t-~~~~~W~~s~t~IG~~Gw~---------~----F~a~~fD~~G~LYav-- 104 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPT-HDNDNWMGRAKKIGNGGWN---------Q----FQFLFFDPNGYLYAV-- 104 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCC-STTCCHHHHCEEEECSCGG---------G----CSEEEECTTSCEEEE--
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCC-CCcccccccccEecccccc---------c----ceEEEECCCCCEEEe--
Confidence 6789999999997777 667755544432 1110 1111111110 0 117899999998887
Q ss_pred CCCcEEEEecCCCceee------eeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCcc--c-c-CCccc--cc
Q 010256 418 YSNLFRVFGCSEGSAES------TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL--D-A-NGNAF--DF 485 (514)
Q Consensus 418 ~dg~i~iwd~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~--~-~-~~~~~--~~ 485 (514)
.||.|+-++..+..... .+-.+--..+..+.+.|+|.+.+.. |+.+.- ...+... . + ....+ +.
T Consensus 105 ~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr--~~~P~~~~~~wl~~~~~~g~~g 180 (236)
T 1tl2_A 105 SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK--ALPPVSNQDNWLARATKIGQGG 180 (236)
T ss_dssp ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE--ECCCSSTTCCHHHHCEEEESSS
T ss_pred CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe--cCCCCCCCcccccccceeccCC
Confidence 56999888764422211 1111222467889999999988887 666543 2222110 0 0 00111 12
Q ss_pred ccceEEEEEcCCCCEEEEE
Q 010256 486 SMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 486 ~~~v~~~~~spd~~~l~~~ 504 (514)
....+.+.|.|++.+.++.
T Consensus 181 ~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 181 WDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp GGGEEEEEECTTSCEEEEE
T ss_pred cceEEEEEECCCCcEEEEe
Confidence 2345668899999998887
No 307
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.32 E-value=0.15 Score=46.67 Aligned_cols=126 Identities=11% Similarity=0.190 Sum_probs=79.8
Q ss_pred CeEEEEECCCCCEEEEecCCeEEEEeccCCCcee-----------eeeccCCCcccccCCceEEEEEecCCC--cEEEEE
Q 010256 235 HINSISNNSDGETFISADDLRINLWNLEISNQSF-----------NIVDVKPANMEDLTEVITSAEFHPTHC--NMLAYS 301 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~-----------~~~~~~~~~~~~~~~~i~~v~~~p~~~--~~l~~~ 301 (514)
.|..+..+|+|++||...+..|.+-.+..+.... +.+.+.+.. .....+|..+.|||-+. ..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~-~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEE-VGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC---CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcc-cCCCCceeEEEeccccCCCCeEEEE
Confidence 5677999999999999888899998887332111 111111111 11357899999999753 489999
Q ss_pred ecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--C-CeEEEE
Q 010256 302 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLW 367 (514)
Q Consensus 302 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~-~~i~iw 367 (514)
..|+.|++||+..... .+. .++... ...-+......|.+++|.+++-.|.... + |.|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~--~P~-~L~k~~---~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQE--KPI-VLNKPN---NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTS--CCE-EESCCC---SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCC--CCc-chhccc---cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999999999986321 112 222110 0001122335789999999888777643 4 777553
No 308
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.31 E-value=0.57 Score=42.04 Aligned_cols=115 Identities=11% Similarity=0.085 Sum_probs=64.5
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecC---CCcEEEEEe--cCCeE
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSS--SKGSI 307 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~---~~~~l~~~~--~dg~i 307 (514)
...+.|+|.|+|.++++- ..|.|++++...+... .+. ..+............|+++|+ +..++++-+ .++.|
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~-~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELG-EVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEE-ECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eec-ccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 456899999999988888 5999999986543321 111 111122234567899999995 214444322 34556
Q ss_pred EEEEcCCCc----cccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE
Q 010256 308 RLIDMRQSA----LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (514)
Q Consensus 308 ~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 358 (514)
.-|.+..+. ........+..... -..| .-..|+|.|||.+.++
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~------~~~H--~g~~l~fgpDG~Lyvt 156 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPK------GVIH--NGGRIAFGPDKMLYAG 156 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECC------CSSC--CCCCEEECTTSCEEEE
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCC------CCCc--cCccccCCCCCCEEEE
Confidence 666655421 11110111111000 0122 3567999999988777
No 309
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.26 E-value=1 Score=44.39 Aligned_cols=142 Identities=11% Similarity=-0.059 Sum_probs=79.4
Q ss_pred ceeEEEEecCCCEEEEEe--CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC-EEEEEeCC
Q 010256 343 SISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYS 419 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d 419 (514)
.+.+++|.+.+..|+..+ .+.|..+++.. .....+.... . .....+++.+.++ ++++-+..
T Consensus 350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g--~~~~~v~~~~-~-------------~~p~GlAvD~~~~~lY~tD~~~ 413 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDG--SGSQFVVTAQ-I-------------AHPDGIAVDWVARNLYWTDTGT 413 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECSS-C-------------SCCCEEEEETTTTEEEEEETTT
T ss_pred ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCC--CccEEEEECC-C-------------CCcCceEEecccCcEEEEeCCC
Confidence 467899998666666554 38888888863 2222222111 0 0012788887554 55555567
Q ss_pred CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecC--CCCeEEE--eeCCCCCccccCCcccccccceEEEEEc
Q 010256 420 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS--LSGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWH 495 (514)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s--~d~~v~i--~~~~~~~~~~~~~~~~~~~~~v~~~~~s 495 (514)
+.|.+.++... .....+.......+.+++.|...+|.... ....|.. .+|.... .+.. +.-...+.|+++
T Consensus 414 ~~I~v~~~~G~-~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~--~l~~---~~l~~P~GlalD 487 (619)
T 3s94_A 414 DRIEVTRLNGT-MRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV--VLVN---TSLGWPNGLALD 487 (619)
T ss_dssp TEEEEEETTSC-SCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--EEEC---SSCSCEEEEEEE
T ss_pred CcEEEEeCCCC-eEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE--EEEe---CCCCCCeeeEEc
Confidence 88999998754 22233334456678999998744443332 2244444 2332211 0110 113456788888
Q ss_pred CCCCEEEEEec
Q 010256 496 PSENSIACAAS 506 (514)
Q Consensus 496 pd~~~l~~~~~ 506 (514)
+++..|..+..
T Consensus 488 ~~~~~LY~aD~ 498 (619)
T 3s94_A 488 YDEGKIYWGDA 498 (619)
T ss_dssp TTTTEEEEEET
T ss_pred ccCCEEEEEEC
Confidence 87777766553
No 310
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.17 E-value=0.77 Score=42.15 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=90.5
Q ss_pred CCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-------cCCeEEEEEcCCCcc
Q 010256 245 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-------SKGSIRLIDMRQSAL 317 (514)
Q Consensus 245 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-------~dg~i~~wd~~~~~~ 317 (514)
.+.|+-..+..|+-|++.......++++.. ..+. ...|..-..+++. ++++..+ -.|.+.+|..+.+.
T Consensus 116 ~~~l~lVT~taVyHWsi~~~s~P~kvFdR~-~~L~--~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~mQLYS~er~~- 190 (494)
T 1bpo_A 116 LNTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKV- 190 (494)
T ss_dssp TTEEEEECSSEEEEEESSSSCCCEEEEECC-GGGT--TCEEEEEEECTTS-SEEEEEEEEEETTEEEEEEEEEESTTCC-
T ss_pred CCeEEEEcCCeeEEecccCCCCchhheecc-hhcc--cceEEEEEECCCC-CeEEEEeecccCCcccceEEEeeccccc-
Confidence 345666678899999998544555544322 1232 5678888889988 6655333 23667788776543
Q ss_pred ccccccceeccCCCCccceeeccccceeEEEEecCC---CEEEEEe----CCeEEEEEccCCCCceeeeeeccccccccc
Q 010256 318 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG---RHILSRD----YMTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g---~~l~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
.+. +.||.+....+.+..+. .++..+. .++++|.++..+...-..+... ..
T Consensus 191 ----sQ~------------ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk------~v 248 (494)
T 1bpo_A 191 ----SQP------------IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK------AV 248 (494)
T ss_dssp ----EEE------------ECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCE------EE
T ss_pred ----cch------------heeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccce------ee
Confidence 222 34444444333332111 1222232 2789999986521111111100 00
Q ss_pred c-ccccCCccce-eeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 391 D-LYENDSIFDK-FECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 391 ~-~~~~~~~~~v-~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
+ ++..+...|. .++..|+.-..+..-+.-|.|++||++++.++
T Consensus 249 dv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 249 DVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp ECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence 0 0111111111 16778888888888899999999999999655
No 311
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.13 E-value=0.59 Score=41.20 Aligned_cols=124 Identities=7% Similarity=0.000 Sum_probs=68.7
Q ss_pred EEEecCCCEEEEEe---CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC-CCcE
Q 010256 347 IKFARNGRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLF 422 (514)
Q Consensus 347 ~~~s~~g~~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i 422 (514)
..|+++++.|+-.+ ++.-.||.+...+.....+..+. ..+|+++++.|+-.+. ...|
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~-------------------~~~~~~~g~~iy~t~~g~~~I 169 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHY-------------------LFTCNTSDRYFYYNNPKNGQL 169 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSC-------------------CCCSEEETTEEEEECTTTCCE
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCC-------------------ceEeeEECCEEEEEeCCCceE
Confidence 36788899888765 34445555544355555554432 1235678888775554 5678
Q ss_pred EEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCC--eEEE--eeCCCCCccccCCcccccccceEEEEEcCCC
Q 010256 423 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG--VVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSE 498 (514)
Q Consensus 423 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~--~v~i--~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~ 498 (514)
+.-++..+... ..+.+ ... ..+.|++++|+-...+. .|.. ++|.... .+. ...+ ..|+|++
T Consensus 170 y~~~l~g~~~~-~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~--~Lt------~~~~--~~~~~~g 234 (302)
T 3s25_A 170 YRYDTASQSEA-LFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV--VLT------EANI--EHYNVYG 234 (302)
T ss_dssp EEEETTTTEEE-EEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCE--ECS------CSCE--EEEEEET
T ss_pred EEEECCCCCEE-EEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeE--EEe------CCCc--ceEEECC
Confidence 88888765332 23332 222 23558888887665443 3444 3333322 111 1222 3478888
Q ss_pred CEEEEE
Q 010256 499 NSIACA 504 (514)
Q Consensus 499 ~~l~~~ 504 (514)
++|..+
T Consensus 235 ~~Iy~~ 240 (302)
T 3s25_A 235 SLIFYQ 240 (302)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 888755
No 312
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.95 E-value=0.91 Score=41.11 Aligned_cols=118 Identities=9% Similarity=0.051 Sum_probs=60.7
Q ss_pred cCeEEEEECCCCC-EEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecC---CCcEEEEEec------
Q 010256 234 YHINSISNNSDGE-TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSS------ 303 (514)
Q Consensus 234 ~~v~~~~~~~~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~---~~~~l~~~~~------ 303 (514)
.....|+|.|+|+ ++++-..|.|++++.. +... ..+.-.+............++++|+ +..++++-+.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~-~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLS-APLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEEC-CCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-Ccee-eEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 3567999999999 7766677999999854 2211 1111011111223456789999995 3245554333
Q ss_pred -CCeEEEEEcCCCcc-ccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE
Q 010256 304 -KGSIRLIDMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 359 (514)
Q Consensus 304 -dg~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 359 (514)
...|..|++..... .......+..... ..-..| ....++|.|||.+.++-
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~----~~~~~h--~~~~l~~~pdG~Lyv~~ 147 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPK----LSTGNH--FGGRLVFDGKGYLFIAL 147 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSC----CBSSSC--CCCCEEECSSSEEEEEE
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCC----CCCCcc--cCccEEECCCCcEEEEE
Confidence 23566666643311 0000011111000 000112 23579999999766663
No 313
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.94 E-value=0.56 Score=38.60 Aligned_cols=156 Identities=7% Similarity=-0.099 Sum_probs=81.5
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCcccee--eccccceeEEEEecCCCEEEEEeC
Q 010256 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF--TEIIASISDIKFARNGRHILSRDY 361 (514)
Q Consensus 284 ~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~g~~l~~~~~ 361 (514)
.+..++|+|+| .+.++ .+|.+.-.+..+... ..+-... ..+ .+- ....++.|.|+|.+.++ ++
T Consensus 42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~-----~~W~~s~-----t~IG~~Gw-~~F~a~~fD~~G~LYav-~d 106 (236)
T 1tl2_A 42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDN-----DNWMGRA-----KKIGNGGW-NQFQFLFFDPNGYLYAV-SK 106 (236)
T ss_dssp TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTT-----CCHHHHC-----EEEECSCG-GGCSEEEECTTSCEEEE-ET
T ss_pred cceeEEECCCc-cEEEE--eCCeEEEECCCCCCc-----ccccccc-----cEeccccc-ccceEEEECCCCCEEEe-CC
Confidence 56799999988 66665 777766555543221 1111100 000 011 11478999999998888 77
Q ss_pred CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCce-----eeee
Q 010256 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA-----ESTT 436 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~ 436 (514)
|.|.-++-.+.+.. ........+ ....-.++..+.|.|+|.+.+.. |+.++-+...++.. ....
T Consensus 107 G~iyr~~pP~~~~~--~Wl~~a~~v-------g~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~ 175 (236)
T 1tl2_A 107 DKLYKASPPQSDTD--NWIARATEV-------GSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATK 175 (236)
T ss_dssp TEEEEESCCCSTTC--CHHHHSEEE-------ECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEE
T ss_pred CEEEEeCCCcCCCC--ceeccccEe-------ccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccce
Confidence 88876654321111 110000000 00000123489999999988776 77765443332211 0111
Q ss_pred ec-CCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 437 LE-ASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 437 ~~-~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+- .....-+-+.|.+++.+.+.. ++.+..
T Consensus 176 ~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y~ 205 (236)
T 1tl2_A 176 IGQGGWDTFKFLFFSSVGTLFGVQ--GGKFYE 205 (236)
T ss_dssp EESSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred eccCCcceEEEEEECCCCcEEEEe--CCeEEe
Confidence 21 223334456688888877666 665555
No 314
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.91 E-value=1.5 Score=43.28 Aligned_cols=153 Identities=11% Similarity=-0.021 Sum_probs=89.9
Q ss_pred eEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEE-ecCCeEEEEEc
Q 010256 236 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKGSIRLIDM 312 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~-~~dg~i~~wd~ 312 (514)
...+++++.+..|..+ ..+.|.+.+++... ...++ ...-.....++++|..+.++.+- +..+.|...++
T Consensus 82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~-------~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~ 153 (628)
T 4a0p_A 82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLV-------WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAM 153 (628)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEE-------CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred cceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEE-------eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeC
Confidence 4578888766655555 57889999987332 21111 12234578999999653444443 12567888887
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeeccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
..... ..+- ........+++++++..|+.++. +.|..+|+.. .....+...-..
T Consensus 154 dG~~~-----~~l~------------~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG--~~~~v~~~~l~~----- 209 (628)
T 4a0p_A 154 DGSER-----TTLV------------PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG--LNREVIADDLPH----- 209 (628)
T ss_dssp TSCSC-----EEEE------------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEECCSC-----
T ss_pred CCCce-----EEEE------------CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC--CceEEeeccCCC-----
Confidence 65432 1111 01145788999998888877653 8899999874 222333211110
Q ss_pred cccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCc
Q 010256 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 431 (514)
-+.+++.. +.++++-...+.|...|..+++
T Consensus 210 ----------P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 210 ----------PFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp ----------EEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred ----------ceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 12666654 4444454457788888876664
No 315
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.90 E-value=0.66 Score=43.70 Aligned_cols=116 Identities=11% Similarity=0.083 Sum_probs=62.8
Q ss_pred cCeEEEEECCCCCEEEEec-CCeEEEEeccCCCceeeeeccCCCccc--ccCCceEEEEEecC---CCcEEEEEec----
Q 010256 234 YHINSISNNSDGETFISAD-DLRINLWNLEISNQSFNIVDVKPANME--DLTEVITSAEFHPT---HCNMLAYSSS---- 303 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~v~~~p~---~~~~l~~~~~---- 303 (514)
...+.|+|.|+|+++++-. .+.|++++...+.. ..+..+.. .+. .....+..|+|+|+ +..+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~-~~~~~~~~-~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTVFQVPE-IVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTT-CCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE-eEEecCCc-cccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 3567999999999888874 45788887653332 12211111 111 13567889999995 4244444432
Q ss_pred --------CCeEEEEEcCCCcc-ccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE
Q 010256 304 --------KGSIRLIDMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 359 (514)
Q Consensus 304 --------dg~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 359 (514)
...|.-|++..... .......+.... .........++|.|||.+.++.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p--------~~~~H~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP--------SSKDHQSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC--------CCSSCCEEEEEECTTSCEEEEE
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCC--------CCCCCCCCeEeECCCCeEEEEE
Confidence 23555555543211 000011111100 0011247889999999987774
No 316
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.88 E-value=0.98 Score=40.89 Aligned_cols=56 Identities=9% Similarity=-0.032 Sum_probs=34.2
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEecCCCcee-----eeeecCCCcceeEEEECCCCCceeec
Q 010256 403 ECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-----STTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 403 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
.++| .+|.++++.-..+.|...+++..... ...+-.....+..+++.|||.++++.
T Consensus 272 G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 272 NLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp EEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred ceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 5677 46776666656677887777643210 11111223567889999998766654
No 317
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.48 E-value=1.4 Score=39.88 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=21.1
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEE
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFE 63 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~ 63 (514)
.....|+|.|+|+++++ ..+|.|++++
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d 55 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS 55 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEEC
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEe
Confidence 45679999999985555 5669998886
No 318
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=94.96 E-value=1.8 Score=38.14 Aligned_cols=160 Identities=14% Similarity=0.175 Sum_probs=86.8
Q ss_pred CEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec-------CCeEEEEEcCCCccc
Q 010256 246 ETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-------KGSIRLIDMRQSALC 318 (514)
Q Consensus 246 ~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-------dg~i~~wd~~~~~~~ 318 (514)
+.|+-..+..|+-|+++......++++.. ..+. ...|..-..+++. ++++..+- .|.+.+|..+.+.
T Consensus 118 ~~L~lVT~taVyHWs~~~~s~P~kvFdR~-~~L~--~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~mQLYS~er~~-- 191 (365)
T 2xzh_A 118 NTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKV-- 191 (365)
T ss_dssp SEEEEEESSEEEEEESSTTCCCEEEEECC-GGGT--TCEEEEEEECTTS-CEEEEEEEEEETTEEEEEEEEEETTTTE--
T ss_pred CeEEEEcCCcEEEEcccCCCCCceeeecc-hhcc--cceEEEEEECCCC-CEEEEEeEeccCCccceeEEEEeecccc--
Confidence 34555567789999998544555544322 2332 4678888888888 55554332 3667788776543
Q ss_pred cccccceeccCCCCccceeeccccceeEEEEecC---CCEEEEEe---C-CeEEEEEccCCCCceeeeeecccccccccc
Q 010256 319 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILSRD---Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---g~~l~~~~---~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
.+. +.+|.+....+.+..+ ..+++.+. . ++++|.++..+...-..+... ..+
T Consensus 192 ---sQ~------------ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk------~vd 250 (365)
T 2xzh_A 192 ---SQP------------IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK------AVD 250 (365)
T ss_dssp ---EEE------------ECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCE------EEE
T ss_pred ---cce------------eeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccc------cce
Confidence 222 3334333332322211 11222221 2 689999986531111111100 000
Q ss_pred -ccccCCc--cceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 392 -LYENDSI--FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 392 -~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
++..+.. +.| ++..|+.-..+..-+.-|.|++||++++.++
T Consensus 251 i~fppea~~DFPV-amqvs~kygviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 251 VFFPPEAQNDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp ECCCTTCTTCCEE-EEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eeCCccccCCceE-EEEecccCCEEEEEeCCcEEEEEEcccCcEE
Confidence 0111111 111 6777887788888889999999999999654
No 319
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.92 E-value=2 Score=38.52 Aligned_cols=33 Identities=9% Similarity=0.083 Sum_probs=25.7
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCC
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDT 67 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~ 67 (514)
-..-..|+|.|||.++++-...|.|++++..++
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g 63 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG 63 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCC
Confidence 356789999999998877655899988875443
No 320
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.85 E-value=3.9 Score=41.52 Aligned_cols=247 Identities=13% Similarity=0.034 Sum_probs=125.5
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCCCc-eeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEISNQ-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
..|.++.-..+|.+-+...+| +..++..++.. .............-....|.++.-..++ ++. .|+ ++-+..||.
T Consensus 324 ~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lW-igt-~~GL~~~~~ 399 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQ-QLW-IAT-DGSINRYDY 399 (758)
T ss_dssp CBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTS-CEE-EEE-TTEEEEEET
T ss_pred ceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCC-CEE-EEe-CCcHhhcCc
Confidence 468888888888776655544 66666543211 1111100000000123468888888877 444 455 467889998
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCC----CCcee---eeeecccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMD----SGPVA---TFQVHEHL 385 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~----~~~~~---~~~~~~~~ 385 (514)
.+++.. .+....... ......|.++...++|.+.+....+-|.++|.... ..... .+......
T Consensus 400 ~~~~~~-----~~~~~~~~~-----~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 469 (758)
T 3ott_A 400 ATRQFI-----HYNIVDNTG-----TYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGL 469 (758)
T ss_dssp TTTEEE-----EEEEECCC-------CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTC
T ss_pred CCCcEE-----EeecCCCcC-----CCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccc
Confidence 776531 121100000 00124588888887777666444466888886520 01110 11111110
Q ss_pred ccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC--C--CcceeEEEECCCCCceeecCC
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA--S--KNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~--~~~v~~~~~~~~~~~l~s~s~ 461 (514)
... .|.++...++|++.+.++..+-|..+|..+++.. .+.. . ...+.++....+|.+.+.. .
T Consensus 470 --------~~~---~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~--~~~~~~~~~~~~~~~i~~d~~g~lWigt-~ 535 (758)
T 3ott_A 470 --------SGM---FINQIIPDNEGNVWVLLYNNKGIDKINPRTREVT--KLFADELTGEKSPNYLLCDEDGLLWVGF-H 535 (758)
T ss_dssp --------SCS---CEEEEEECTTSCEEEEETTCSSEEEEETTTTEEE--EECTTTSCGGGCEEEEEECTTSCEEEEE-T
T ss_pred --------ccc---eeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceE--EecCCCcCCCcccceEEECCCCCEEEEe-c
Confidence 011 2447888888987764444456888898765322 2211 1 2356777777888766544 4
Q ss_pred CCeEEE-eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 462 SGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 462 d~~v~i-~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
.|-.++ ........ +....+ ....|.++... +| .|..++.+++..|.
T Consensus 536 ~Gl~~~~~~~~~~~~--~~~~gl-~~~~i~~i~~~-~g-~lWi~t~~Gl~~~~ 583 (758)
T 3ott_A 536 GGVMRINPKDESQQS--ISFGSF-SNNEILSMTCV-KN-SIWVSTTNGLWIID 583 (758)
T ss_dssp TEEEEECC--CCCCB--CCCCC----CCEEEEEEE-TT-EEEEEESSCEEEEE
T ss_pred CceEEEecCCCceEE--ecccCC-CccceEEEEEC-CC-CEEEECCCCeEEEc
Confidence 565555 11111111 100001 13457777653 44 46666677777664
No 321
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.79 E-value=1.7 Score=40.96 Aligned_cols=33 Identities=9% Similarity=0.167 Sum_probs=23.1
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEEcCCCc
Q 010256 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (514)
Q Consensus 283 ~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 316 (514)
...+.++|.|+| +++++-...+.|++++..++.
T Consensus 27 ~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~ 59 (454)
T 1cru_A 27 NKPHALLWGPDN-QIWLTERATGKILRVNPESGS 59 (454)
T ss_dssp SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCC
T ss_pred CCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCc
Confidence 356799999999 766654444578888765443
No 322
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=94.43 E-value=2.4 Score=37.31 Aligned_cols=133 Identities=7% Similarity=0.127 Sum_probs=73.9
Q ss_pred cCeEEEEECCCCCEEEE-e---c----CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEe--cCCCcEEEEEec
Q 010256 234 YHINSISNNSDGETFIS-A---D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSS 303 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s-~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~--p~~~~~l~~~~~ 303 (514)
..|.....+++.++++. | . .|.+.+|..+..... .+++|......+.+. +....+|+.+..
T Consensus 152 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ---------~ieGhaa~F~~~~~~g~~~~~~lf~fa~r 222 (365)
T 2xzh_A 152 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ---------PIEGHAASFAQFKMEGNAEESTLFCFAVR 222 (365)
T ss_dssp CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE---------EECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred ceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccc---------eeeeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 45667777888888764 2 1 477889998844322 346665444333322 111134444443
Q ss_pred C---CeEEEEEcCCCc-ccccc-ccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCcee
Q 010256 304 K---GSIRLIDMRQSA-LCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVA 377 (514)
Q Consensus 304 d---g~i~~wd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~ 377 (514)
. +.+++.++.... -.... .+..+..-.+ ....+-.-++..|+....++.-+. |.|++||+.+ +.++.
T Consensus 223 ~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fpp------ea~~DFPVamqvs~kygviyviTK~G~ihlyDleT-gt~i~ 295 (365)
T 2xzh_A 223 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIY 295 (365)
T ss_dssp ETTEEEEEEEECSSCCTTCCCCCCEEEEECCCT------TCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEEE
T ss_pred cCCCcEEEEEEcCCCCCCCCCcccccceeeCCc------cccCCceEEEEecccCCEEEEEeCCcEEEEEEccc-CcEEE
Confidence 2 588888885431 00000 1111111111 011245667888887777777665 9999999998 77766
Q ss_pred eeeec
Q 010256 378 TFQVH 382 (514)
Q Consensus 378 ~~~~~ 382 (514)
.-+-.
T Consensus 296 ~nrIS 300 (365)
T 2xzh_A 296 MNRIS 300 (365)
T ss_dssp EEECC
T ss_pred EeccC
Confidence 55433
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.32 E-value=2.9 Score=37.75 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=22.0
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEe
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFER 64 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~ 64 (514)
.....|+|.|+|++|+.+...|.|++++.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~ 46 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQA 46 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEET
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeC
Confidence 45689999999983444456799998884
No 324
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.02 E-value=4.5 Score=43.47 Aligned_cols=161 Identities=13% Similarity=0.156 Sum_probs=85.2
Q ss_pred CCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-------cCCeEEEEEcCCCcc
Q 010256 245 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-------SKGSIRLIDMRQSAL 317 (514)
Q Consensus 245 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-------~dg~i~~wd~~~~~~ 317 (514)
.+.|+-..+..|+.|++.....+.++++.. .++. ...|..-..+++. ++++..+ -.|.+.+|..+.+.
T Consensus 116 ~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~-~~L~--~~QIinY~~d~~~-kW~~l~gi~~~~~~v~G~mQLyS~er~~- 190 (1630)
T 1xi4_A 116 LNTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKV- 190 (1630)
T ss_pred CCeeEEEcCCeEEEeccCCCCccHHHHhcc-hhcc--cCeeEEeeeCCCC-CeEEEEeeccCCCcccceeeeeeccccc-
Confidence 345555577889999997433333332211 1222 4667777888888 5555333 34778888876543
Q ss_pred ccccccceeccCCCCccceeeccccceeEEEEec---CCCEEEEEe----CCeEEEEEccCCCCceeeeeeccccccccc
Q 010256 318 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILSRD----YMTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~g~~l~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
.+. +.||.+....+.... ...++..+. .++++|-++..+...-..+... ..
T Consensus 191 ----sQ~------------iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk------~~ 248 (1630)
T 1xi4_A 191 ----SQP------------IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK------AV 248 (1630)
T ss_pred ----chh------------hhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccc------cc
Confidence 222 333333333333321 112222221 2789998886520111111100 00
Q ss_pred c-ccccCCc--cceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 391 D-LYENDSI--FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 391 ~-~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
+ ++..+.. ++| ++..++.-..+..-+.-|.+++||+.++..+
T Consensus 249 ~~~~~~~~~~Dfpv-~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 249 DVFFPPEAQNDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred cccCCcccccCcce-EEEeccccCEEEEEecCceEEEEecccchhh
Confidence 0 0111111 111 5777877778888889999999999998554
No 325
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=92.47 E-value=6 Score=35.85 Aligned_cols=158 Identities=9% Similarity=0.058 Sum_probs=80.7
Q ss_pred eEEEEeccCCC-ceeeeeccCCCcccccCCceEEEEEe---cC---CCcEEEEEe-cCCeEEEEEcCCCcccccccccee
Q 010256 255 RINLWNLEISN-QSFNIVDVKPANMEDLTEVITSAEFH---PT---HCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 255 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~v~~~---p~---~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
.|.+||+.+.. +.++.+.+.+.... ....+..+++. |. +..+++.+. ..+.|.++|+.+++.. +...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~-~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~sw----Rv~~ 198 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVE-KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSW----NVTH 198 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCC-CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEE----EEEC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcc-cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEE----EEcc
Confidence 45566766551 23333333222222 24568888887 22 113444343 4678999999988752 1111
Q ss_pred ccCCCCc--cceeecc----ccceeEEEEecC----CCEEEEEeCCeEEEEEccC----CCCceeee--eeccccccccc
Q 010256 327 EQEAPGT--RSFFTEI----IASISDIKFARN----GRHILSRDYMTLKLWDINM----DSGPVATF--QVHEHLRPKLC 390 (514)
Q Consensus 327 ~~~~~~~--~~~~~~~----~~~i~~~~~s~~----g~~l~~~~~~~i~iwd~~~----~~~~~~~~--~~~~~~~~~~~ 390 (514)
..-.+.. .....+. ...+..++++|+ ++.|+-..-..-++|.+.+ .......+ .+..+.
T Consensus 199 ~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~----- 273 (381)
T 3q6k_A 199 PTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGK----- 273 (381)
T ss_dssp GGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCT-----
T ss_pred CCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCC-----
Confidence 1111111 1111121 247899999998 7888775432335555442 01110111 111110
Q ss_pred cccccCCccceeeEEEc-CCCCEEEEEeCCCcEEEEecCC
Q 010256 391 DLYENDSIFDKFECCLS-GDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
..+-..+++. .+|.++++--..+.|..|+...
T Consensus 274 -------~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 274 -------YNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp -------TCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred -------CCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 0111145675 6787777777889999999875
No 326
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=92.30 E-value=6.9 Score=36.09 Aligned_cols=165 Identities=7% Similarity=0.080 Sum_probs=91.1
Q ss_pred cCeEEEEECCCCCEEEE-e---c----CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEec--CCCcEEEEEec
Q 010256 234 YHINSISNNSDGETFIS-A---D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSS 303 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s-~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p--~~~~~l~~~~~ 303 (514)
..|.....+++.++++. | . .|.+.+|..+..... .+++|......+.+.. ....+|+.+..
T Consensus 151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ---------~ieGhaa~F~~~~~~g~~~~~~lf~fa~r 221 (494)
T 1bpo_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ---------PIEGHAASFAQFKMEGNAEESTLFCFAVR 221 (494)
T ss_dssp CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE---------EECCSEEEEEEEECTTCSSEEEEEEEEEC
T ss_pred ceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc---------hheeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 45677778889988774 2 1 477889998844322 3566665554444321 11134555544
Q ss_pred C---CeEEEEEcCCCc-ccccc-ccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCcee
Q 010256 304 K---GSIRLIDMRQSA-LCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVA 377 (514)
Q Consensus 304 d---g~i~~wd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~ 377 (514)
. +.+++.++.... -.... .+..+..-.+ ....+-.-++..|+....++.-+. |.|++||+.+ +.++.
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp------e~~~DFPvamqvs~kygviyviTK~G~i~lyDleT-gt~i~ 294 (494)
T 1bpo_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIY 294 (494)
T ss_dssp STTCCEEEEEECSCCCTTCCCCCCEEEECCCCT------TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEEE
T ss_pred cCCCcEEEEEEcCCCccCCCCccceeeeeeCCc------ccccCceeEEEecccCCEEEEEecCceEEEEeccc-ceeee
Confidence 3 789999985431 00000 1111111111 111245567888888777777665 9999999998 77766
Q ss_pred eeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 378 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
.-+-.... |+..+-+....=++.....|.|.--.+..
T Consensus 295 ~nrIs~~~---------------iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 295 MNRISGET---------------IFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp EEECCSSC---------------EEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred eecccCCc---------------eEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 55433322 22333333333444445666665555544
No 327
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.18 E-value=2.9 Score=39.78 Aligned_cols=105 Identities=10% Similarity=0.047 Sum_probs=66.8
Q ss_pred ceeEEEEecCCCEEEEEeC--CeEEEEEccC-----CCCc---eeeeeeccccccccccccccCCccceeeEEEcCCCCE
Q 010256 343 SISDIKFARNGRHILSRDY--MTLKLWDINM-----DSGP---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 412 (514)
....+.++|||+++++++. .++.++|++. ..+. ...+....... ..-.-.+|.++|+.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G------------lGPlHt~Fd~~G~a 391 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG------------LGPLHTTFDGRGNA 391 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC------------SCEEEEEECSSSEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC------------CcccEEEECCCCce
Confidence 4567899999999999754 8999999874 1111 11111111100 01125799999966
Q ss_pred EEEEeCCCcEEEEecCCC---------ceeeeeecCCCcceeEEE-----ECCCCCceeec
Q 010256 413 VATGSYSNLFRVFGCSEG---------SAESTTLEASKNPMRRQV-----QTPSRPSRPLG 459 (514)
Q Consensus 413 l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~v~~~~-----~~~~~~~l~s~ 459 (514)
..+---|..|--|++... ......+..|..+-.-.+ -.++|++|++.
T Consensus 392 YTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~l 452 (638)
T 3sbq_A 392 YTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVAL 452 (638)
T ss_dssp EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEE
T ss_pred EeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEe
Confidence 666778999999998642 133455666665543333 26889999886
No 328
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=91.98 E-value=12 Score=38.01 Aligned_cols=251 Identities=7% Similarity=-0.011 Sum_probs=124.9
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
..|.++....+|.+-+....| +.++... . ...........-......|.++.-..+| .+. .|+.+ -+..++..
T Consensus 279 ~~i~~i~~D~~g~lWiGT~~G-l~~~~~~-~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g-~lW-iGt~~-Gl~~~~~~ 351 (758)
T 3ott_A 279 NIIWNIFADQEHNIWLGTDYG-ISLSRYN-S--ALQFIPISQITGTGDGNQFYSLFRDSKG-FYW-FGGAN-GLIRFTDP 351 (758)
T ss_dssp SCEEEEEECTTCCEEEEESSS-EEEECCC-C---CEEEEHHHHSCSCCCCBEEEEEECTTC-CEE-EEETT-EEEEESCT
T ss_pred CeEEEEEEcCCCCEEEEeCCc-ccccccC-C--ceeEEecccCCCCCCCceEEEEEEcCCC-CEE-EeeCC-cceeeccc
Confidence 468899888888766655556 5444322 1 1111100000001123568888888877 444 45555 45666655
Q ss_pred CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeecccccccccccc
Q 010256 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 393 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
++.... ...+...... ..+ ....|.++.-..+|++.+.. ++-|..||..+ + ....+....... ..
T Consensus 352 ~~~~~~--~~~~~~~~~~---~~l--~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~-~-~~~~~~~~~~~~-----~~ 416 (758)
T 3ott_A 352 AGERHD--AIWYRMGDKT---YPL--SHNRIRHIYEDKEQQLWIAT-DGSINRYDYAT-R-QFIHYNIVDNTG-----TY 416 (758)
T ss_dssp TSSCCC--CEEECTTCSS---SCC--SCSCEEEEEECTTSCEEEEE-TTEEEEEETTT-T-EEEEEEEECCC-------C
T ss_pred ccccce--eEEeccCCcC---CCC--CCCceEEEEECCCCCEEEEe-CCcHhhcCcCC-C-cEEEeecCCCcC-----CC
Confidence 432110 1111110000 000 11458888888888776654 56788999875 3 233322111100 00
Q ss_pred ccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC-----ceee--eeec---C-CCcceeEEEECCCCCcee-ecCC
Q 010256 394 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG-----SAES--TTLE---A-SKNPMRRQVQTPSRPSRP-LGSL 461 (514)
Q Consensus 394 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-----~~~~--~~~~---~-~~~~v~~~~~~~~~~~l~-s~s~ 461 (514)
... .|.++...++|++. .|+..+-|.++|..+. .... ..+. + ....|.++...+++.+.+ .++.
T Consensus 417 ~~~---~v~~i~~d~~g~lW-igT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~ 492 (758)
T 3ott_A 417 NTN---WTYYIFEDTAGQLW-ISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNN 492 (758)
T ss_dssp BSS---SEEEEEECTTSEEE-EEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTC
T ss_pred CCc---eEEEEEEcCCCCEE-EEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCC
Confidence 001 13467766677644 4666667888886421 1110 0111 1 123488888888888775 4555
Q ss_pred CCeEEEe-eCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 462 SGVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 462 d~~v~i~-~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
.|-.++- ...+.. .+..........+.++....+|++-+ |+.++++.|.
T Consensus 493 ~Gl~~~d~~~~~~~--~~~~~~~~~~~~~~~i~~d~~g~lWi-gt~~Gl~~~~ 542 (758)
T 3ott_A 493 KGIDKINPRTREVT--KLFADELTGEKSPNYLLCDEDGLLWV-GFHGGVMRIN 542 (758)
T ss_dssp SSEEEEETTTTEEE--EECTTTSCGGGCEEEEEECTTSCEEE-EETTEEEEEC
T ss_pred CCcEEEeCCCCceE--EecCCCcCCCcccceEEECCCCCEEE-EecCceEEEe
Confidence 6666651 111111 01000111134677888777777554 4567887764
No 329
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=91.23 E-value=7 Score=34.03 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=17.7
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCcee
Q 010256 409 DGGRVATGSYS-----NLFRVFGCSEGSAE 433 (514)
Q Consensus 409 ~~~~l~s~~~d-----g~i~iwd~~~~~~~ 433 (514)
++++++.|+.+ ..+.+||+++.+..
T Consensus 253 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 253 RGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp TTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred CCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 67777777765 45788998876543
No 330
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=90.64 E-value=11 Score=35.34 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=62.1
Q ss_pred cCeEEEEECCCCC--EEEEecCCeEEEEeccCCCceeeeeccCCCccc----ccCCceEEEEEecC----CCcEEEEEec
Q 010256 234 YHINSISNNSDGE--TFISADDLRINLWNLEISNQSFNIVDVKPANME----DLTEVITSAEFHPT----HCNMLAYSSS 303 (514)
Q Consensus 234 ~~v~~~~~~~~~~--~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~i~~v~~~p~----~~~~l~~~~~ 303 (514)
...+.|+|.|++. +|++-..|.|++++.........+.++...... ........|+|+|+ + .++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~-~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG-KLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC-EEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC-EEEEEEeC
Confidence 4567899999985 666668899999975422111111111111111 12467889999996 4 44444332
Q ss_pred C------------CeEEEEEcCCCc--ccc--ccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC
Q 010256 304 K------------GSIRLIDMRQSA--LCD--THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 361 (514)
Q Consensus 304 d------------g~i~~wd~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 361 (514)
+ ..|.-|.+..+. ... .....++... ....| ....|+|.|||.+.++-.+
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~------~~~~H--~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE------LHRKH--LGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE------SSSSS--CEEEEEECTTSCEEEEECC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC------CCCcc--cCCcEeECCCCcEEEEeCC
Confidence 1 134445554321 100 1011111110 01123 4678999999988777443
No 331
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=88.60 E-value=12 Score=32.77 Aligned_cols=106 Identities=9% Similarity=0.074 Sum_probs=56.0
Q ss_pred EEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC--CeEEEEEcCC
Q 010256 239 ISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSIRLIDMRQ 314 (514)
Q Consensus 239 ~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d--g~i~~wd~~~ 314 (514)
.+++++++.|.-. ....|..-++.... ...+. .+... ..+.|++ ..|+-...+ ..|..-++..
T Consensus 150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~-~~~l~----------~~~~~-~~~~P~g-~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 150 FTCNTSDRYFYYNNPKNGQLYRYDTASQS-EALFY----------DCNCY-KPVVLDD-TNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp CCSEEETTEEEEECTTTCCEEEEETTTTE-EEEEE----------CSCEE-EEEEEET-TEEEEEEGGGTTEEEEECSSS
T ss_pred eEeeEECCEEEEEeCCCceEEEEECCCCC-EEEEe----------CCCcc-ceeeecC-CEEEEEEcCCCcEEEEEECCC
Confidence 3467788888765 35777777776333 22221 11222 3356888 566655443 3565556654
Q ss_pred CccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC---CeEEEEEccCCCCceeeee
Q 010256 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGPVATFQ 380 (514)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---~~i~iwd~~~~~~~~~~~~ 380 (514)
... ..+.. ..+ ..|+|+++.|+-+++ ..|..-++. +.....+.
T Consensus 217 ~~~-----~~Lt~--------------~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D--G~~r~~l~ 262 (302)
T 3s25_A 217 PNP-----VVLTE--------------ANI--EHYNVYGSLIFYQRGGDNPALCVVKND--GTGFKELA 262 (302)
T ss_dssp CCC-----EECSC--------------SCE--EEEEEETTEEEEEECSSSCEEEEEETT--SCCCEEEE
T ss_pred CCe-----EEEeC--------------CCc--ceEEECCCEEEEEECCCCcEEEEEECC--CCccEEee
Confidence 432 11111 123 347888998886533 455555554 55444443
No 332
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=88.18 E-value=12 Score=32.43 Aligned_cols=25 Identities=8% Similarity=0.165 Sum_probs=18.2
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCcee
Q 010256 409 DGGRVATGSYS-----NLFRVFGCSEGSAE 433 (514)
Q Consensus 409 ~~~~l~s~~~d-----g~i~iwd~~~~~~~ 433 (514)
++++++.|+.+ ..+.+||+.+....
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 67777777754 46899999877544
No 333
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=86.71 E-value=15 Score=31.93 Aligned_cols=52 Identities=6% Similarity=-0.004 Sum_probs=27.7
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCceeee-eecCCCcceeEEEECCCCCceeecCCC
Q 010256 409 DGGRVATGSYS-----NLFRVFGCSEGSAEST-TLEASKNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 409 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~s~d 462 (514)
++++++.|+.+ ..+.+||+.+.+.... .+.........+.+ ++++++.|+.+
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQ 257 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBC
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcC
Confidence 66777777653 4688999987654321 11111111122222 55666666644
No 334
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=86.00 E-value=43 Score=36.41 Aligned_cols=154 Identities=10% Similarity=0.160 Sum_probs=95.3
Q ss_pred cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCC
Q 010256 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (514)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 331 (514)
+..+|.|.|+..+....+ ..-..-+...+|.. +.+|.-. ...+.|||+.+.... +.+...
T Consensus 46 ~~~~vvIidl~~~~~~~r-----------rpi~AdsAIMnP~~-~iiALra-g~~lQiFnl~~k~kl----ks~~~~--- 105 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIR-----------RPISADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKM----KAHTMT--- 105 (1630)
T ss_pred CCceEEEEECCCCCCccc-----------ccccchhhccCCCc-ceEEEec-CCeEEEeehHHhhhh----cccccC---
Confidence 344788888886554321 11222355678887 6666554 789999999886552 222222
Q ss_pred CccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC
Q 010256 332 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (514)
Q Consensus 332 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 411 (514)
.+|.-=.|-. .+.|+--++..|.-|++.....|.+.+..|..... ..|..-..+++.+
T Consensus 106 ----------e~VvfWkWis-~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~-----------~QIinY~~d~~~k 163 (1630)
T 1xi4_A 106 ----------DDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAG-----------CQIINYRTDAKQK 163 (1630)
T ss_pred ----------CCceEEEecC-CCeeEEEcCCeEEEeccCCCCccHHHHhcchhccc-----------CeeEEeeeCCCCC
Confidence 2455555543 34555555668999999754677777777765421 1133667788888
Q ss_pred EEEEEe-------CCCcEEEEecCCCceeeeeecCCCcceeEEEE
Q 010256 412 RVATGS-------YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 449 (514)
Q Consensus 412 ~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 449 (514)
+++..+ -.|.+.+|..+.+ ..+.++||......+..
T Consensus 164 W~~l~gi~~~~~~v~G~mQLyS~er~--~sQ~iegha~~F~~~~~ 206 (1630)
T 1xi4_A 164 WLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKM 206 (1630)
T ss_pred eEEEEeeccCCCcccceeeeeecccc--cchhhhHhHhhhheecc
Confidence 877433 3478899998743 44678888665544443
No 335
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=83.99 E-value=9.2 Score=34.06 Aligned_cols=111 Identities=12% Similarity=0.116 Sum_probs=59.1
Q ss_pred cEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE--eCCeEEEEEccCCC
Q 010256 296 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--DYMTLKLWDINMDS 373 (514)
Q Consensus 296 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--~~~~i~iwd~~~~~ 373 (514)
.+++.++.||.|.-+|..+|+..++.... ... + ....... .. ..++..++.. .+|.|..++..+ +
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~-p--~~~~~~~--~~-----~~~~~~~vv~p~~dG~l~a~~~~~-G 77 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQ-P--LIEIQEP--SR-----LETYETLIIEPFGDGNIYYFNAHQ-G 77 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG--GSC-C--SEECCCS--CT-----TTSSEEEEECCSTTTEEEEEETTT-E
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC--ccC-C--cEEecCC--cc-----ccCCcEEEEEECCCCEEEEEECCC-C
Confidence 47888999999999999999876542111 000 0 0000000 00 0123333332 458888888765 4
Q ss_pred CceeeeeeccccccccccccccCCccceeeEEEc-----------CCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 374 GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS-----------GDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
.....+..... +. .. .+... ..+..+++|+.+|++.-.|+.+|+.+
T Consensus 78 ~~~~~~~~~~l-v~-~S------------P~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~ 134 (339)
T 2be1_A 78 LQKLPLSIRQL-VS-TS------------PLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEII 134 (339)
T ss_dssp EEEEEEEHHHH-HT-TC------------SEEEECC----------CCEEEEECEEEEEEEEEETTTCCEE
T ss_pred cEEeeeccccc-ee-cc------------ccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEE
Confidence 33222221110 00 00 01111 14557889999999999999998544
No 336
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=82.97 E-value=23 Score=30.73 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=17.2
Q ss_pred CCCEEEEEeCCC-----cEEEEecCCCce
Q 010256 409 DGGRVATGSYSN-----LFRVFGCSEGSA 432 (514)
Q Consensus 409 ~~~~l~s~~~dg-----~i~iwd~~~~~~ 432 (514)
++++++.|+.++ .+.+||+.+.+.
T Consensus 251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 251 NGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 677777777553 488899887644
No 337
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=82.01 E-value=3.8 Score=39.04 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=52.8
Q ss_pred CeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCC----cccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010256 235 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA----NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
....+.++|||++++.+ -+.++.++|++.-...+.-.-.++. .-....-.....+|.++| +...+---|..|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqvv 402 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQVV 402 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeeeeecceEE
Confidence 34578889999998886 6999999999842211100000000 001124556889999998 7777777899999
Q ss_pred EEEcCC
Q 010256 309 LIDMRQ 314 (514)
Q Consensus 309 ~wd~~~ 314 (514)
-|++..
T Consensus 403 kWni~~ 408 (638)
T 3sbq_A 403 KWNMEE 408 (638)
T ss_dssp EEEHHH
T ss_pred EEeccH
Confidence 999975
No 338
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=80.84 E-value=27 Score=30.26 Aligned_cols=25 Identities=0% Similarity=-0.089 Sum_probs=18.3
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCcee
Q 010256 409 DGGRVATGSYS-----NLFRVFGCSEGSAE 433 (514)
Q Consensus 409 ~~~~l~s~~~d-----g~i~iwd~~~~~~~ 433 (514)
++++++.|+.+ ..+.+||+.+.+..
T Consensus 247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 247 GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 67778888754 56889999876554
No 339
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=79.19 E-value=32 Score=30.03 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=18.0
Q ss_pred CCCEEEEEeCCC-----cEEEEecCCCcee
Q 010256 409 DGGRVATGSYSN-----LFRVFGCSEGSAE 433 (514)
Q Consensus 409 ~~~~l~s~~~dg-----~i~iwd~~~~~~~ 433 (514)
++++++.|+.++ .+.+||+.+.+..
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 677777777654 5889999877544
No 340
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=78.43 E-value=57 Score=32.58 Aligned_cols=223 Identities=9% Similarity=0.007 Sum_probs=108.8
Q ss_pred EEEE-ECCCCCEEEEe------cCCeEEEEeccCCCceeeeeccCCCccc-ccCC------ceEEEEEecCCCcEEEEEe
Q 010256 237 NSIS-NNSDGETFISA------DDLRINLWNLEISNQSFNIVDVKPANME-DLTE------VITSAEFHPTHCNMLAYSS 302 (514)
Q Consensus 237 ~~~~-~~~~~~~l~s~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~------~i~~v~~~p~~~~~l~~~~ 302 (514)
..+. ++|++++++.+ +-..++++|+.+++..-. .+. .... ....++|..++ .++++..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-------~~~~~~k~~~~~~~~~~~~~W~d~~-~~~~~~~ 203 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-------GFEPITNSGKLLEGKFTYPTWINKD-TIIFNLV 203 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-------CSCCBCTTCCBCCEETCCEEEEETT-EEEECCC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-------CcccccccccccccccceeeEECCC-EEEEEeC
Confidence 3444 89999988864 234799999987654321 111 0001 11344776444 4444321
Q ss_pred ----------cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCE-----EEEEe-C---Ce
Q 010256 303 ----------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH-----ILSRD-Y---MT 363 (514)
Q Consensus 303 ----------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-----l~~~~-~---~~ 363 (514)
....++.|.+-+..... ...|+.... ..-.+...++++++ +++.+ + ..
T Consensus 204 ~~~~~~~~~~~~~~v~~~~~Gt~~~~~--~~v~~~~~~-----------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 270 (711)
T 4hvt_A 204 LHKNEITSSLYPNSLYIWKRGESIEKA--KKLFEVPKE-----------YIYVSAGKLLSDTISSSLIFISANKDFYNYD 270 (711)
T ss_dssp CSTTCBCTTSSBCEEEEEETTSCGGGC--EEEEECCTT-----------SCEEEEEESSCTTTCSSEEEEEEESSSSCEE
T ss_pred CCCCCcCcCCCCCEEEEEECCCChHHC--eEEeccCCC-----------ceEEEEEEecCCCceEEEEEEEEecccCcee
Confidence 12457777765543211 233333221 11233445666663 34332 2 45
Q ss_pred EEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE----------eCCCcEEEEecCCCc--
Q 010256 364 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG----------SYSNLFRVFGCSEGS-- 431 (514)
Q Consensus 364 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~----------~~dg~i~iwd~~~~~-- 431 (514)
+.+.+...+...+..+...... .+..+.++.+++.. ...++|...++.+..
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 333 (711)
T 4hvt_A 271 NYILDTKYKNLKLQKINMPSDA-----------------TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKT 333 (711)
T ss_dssp EEEEECSSSSCEEEECCSCTTC-----------------EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSC
T ss_pred EEEEcCCCCCCcceEeecCCcc-----------------eEeeeECCEEEEEECcccccccccCCCCeEEEEECCccccc
Confidence 5666654322222333222211 33344566655532 145778899987631
Q ss_pred ----eeeee-e-cCCCcceeEEEECCCCCceeecCCCCeEEE--e--eCCC--CCccccCCcccccccceEEEEEcCCCC
Q 010256 432 ----AESTT-L-EASKNPMRRQVQTPSRPSRPLGSLSGVVRR--V--KGAD--NSALDANGNAFDFSMKLLHLAWHPSEN 499 (514)
Q Consensus 432 ----~~~~~-~-~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i--~--~~~~--~~~~~~~~~~~~~~~~v~~~~~spd~~ 499 (514)
..... + ......+..+.+..+ .++++...++.-++ + .+.. ... .+. +...+.+..+..+++++
T Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~-~i~---lp~~~~~~~~~~~~~~~ 408 (711)
T 4hvt_A 334 ESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPV-VLK---LPYQNAIFGMSSYEEEE 408 (711)
T ss_dssp GGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCE-EEC---CCSTTCEEEEECCTTCS
T ss_pred ccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEe-ccC---CCCCeEEEEEeecCcCC
Confidence 11122 3 233445677788765 56777777877666 2 2221 110 010 11124566667777776
Q ss_pred EEE
Q 010256 500 SIA 502 (514)
Q Consensus 500 ~l~ 502 (514)
.++
T Consensus 409 ~~~ 411 (711)
T 4hvt_A 409 EAL 411 (711)
T ss_dssp CEE
T ss_pred EEE
Confidence 555
No 341
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=76.98 E-value=43 Score=31.37 Aligned_cols=28 Identities=7% Similarity=0.007 Sum_probs=21.8
Q ss_pred ceeEEEEecCCC--EEEEEeCCeEEEEEcc
Q 010256 343 SISDIKFARNGR--HILSRDYMTLKLWDIN 370 (514)
Q Consensus 343 ~i~~~~~s~~g~--~l~~~~~~~i~iwd~~ 370 (514)
....|+|.|+|. ++++-..|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 467899999985 7776656999999754
No 342
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=74.01 E-value=43 Score=28.89 Aligned_cols=25 Identities=12% Similarity=0.096 Sum_probs=18.2
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCcee
Q 010256 409 DGGRVATGSYS-----NLFRVFGCSEGSAE 433 (514)
Q Consensus 409 ~~~~l~s~~~d-----g~i~iwd~~~~~~~ 433 (514)
++++++.|+.+ ..+.+||+.+.+..
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence 67777777754 46899999876544
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=73.92 E-value=75 Score=31.67 Aligned_cols=158 Identities=9% Similarity=0.045 Sum_probs=76.3
Q ss_pred CCCEEEEe-cC------CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC--eEEEEEcCC
Q 010256 244 DGETFISA-DD------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--SIRLIDMRQ 314 (514)
Q Consensus 244 ~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg--~i~~wd~~~ 314 (514)
++++++.| .+ ..+.+||..+.. ...+. .+...... .+++...++ .+++.|+.++ .+.+||+.+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~--W~~~~----~~p~~R~~-h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t 522 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTRE--WSMIK----SLSHTRFR-HSACSLPDG-NVLILGGVTEGPAMLLYNVTE 522 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTE--EEECC----CCSBCCBS-CEEEECTTS-CEEEECCBCSSCSEEEEETTT
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCc--EEECC----CCCCCccc-ceEEEEcCC-EEEEECCCCCCCCEEEEECCC
Confidence 66677765 32 357788887542 21111 11111111 122332355 7888888755 688999887
Q ss_pred CccccccccceeccCCCCccceeeccccceeEEEEecC-CCEEEEEeC--------CeEEEEEccCCCCc-----eeeee
Q 010256 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRDY--------MTLKLWDINMDSGP-----VATFQ 380 (514)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~--------~~i~iwd~~~~~~~-----~~~~~ 380 (514)
..-.. +... + ..+.. .....++.+..+ +++++.|+. ..+.+||+.+ ..- -..+.
T Consensus 523 ~~W~~--~~~~-g-~~p~~-------r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~-~~w~~~~~W~~~~ 590 (695)
T 2zwa_A 523 EIFKD--VTPK-D-EFFQN-------SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA-ENATEPITVIKKL 590 (695)
T ss_dssp TEEEE--CCCS-S-GGGGS-------CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT-TCSSCCEEEEEEE
T ss_pred CceEE--ccCC-C-CCCCc-------ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC-CccccceEEEEcC
Confidence 54211 1110 0 00000 012233555555 556665531 4688999886 331 11111
Q ss_pred eccccccccccccccCCccceeeEEEcCCCCEEEEEeC--------CCcEEEEecCCCcee
Q 010256 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY--------SNLFRVFGCSEGSAE 433 (514)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--------dg~i~iwd~~~~~~~ 433 (514)
.... .. ... .+++...++++++.|+. ...+.+||+.+....
T Consensus 591 ~~p~-~~---------R~~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 591 QHPL-FQ---------RYG--SQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp ECGG-GC---------CBS--CEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred CCCC-CC---------ccc--ceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 1000 00 000 03333334777777774 346999999887554
No 344
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=72.92 E-value=51 Score=29.29 Aligned_cols=26 Identities=8% Similarity=-0.091 Sum_probs=18.5
Q ss_pred CCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 245 GETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 245 ~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
+..+.+| .++.+...|+++++...+.
T Consensus 111 ~g~Vy~Gs~~g~l~ald~~tG~~~W~~ 137 (339)
T 2be1_A 111 DEKVYTGSMRTIMYTINMLNGEIISAF 137 (339)
T ss_dssp CEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 3455566 8889999998887766543
No 345
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.91 E-value=67 Score=33.46 Aligned_cols=40 Identities=8% Similarity=0.194 Sum_probs=31.8
Q ss_pred ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeecc
Q 010256 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~ 155 (514)
.+.++.. .++..++++-+.|+++|+|++.++++.....+.
T Consensus 237 ~~~~~~~--~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 237 TIISMIF--LSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp CEEEEEE--ETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred eEEEEee--cCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 4555665 456679999999999999999999988776654
No 346
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=72.62 E-value=47 Score=28.78 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=18.3
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCcee
Q 010256 409 DGGRVATGSYS-----NLFRVFGCSEGSAE 433 (514)
Q Consensus 409 ~~~~l~s~~~d-----g~i~iwd~~~~~~~ 433 (514)
++++++.|+.+ ..+.+||+.+.+..
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 67777777654 56899999876543
No 347
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=69.72 E-value=55 Score=28.34 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=17.1
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCcee
Q 010256 409 DGGRVATGSYS-----NLFRVFGCSEGSAE 433 (514)
Q Consensus 409 ~~~~l~s~~~d-----g~i~iwd~~~~~~~ 433 (514)
++++++.|+.+ ..+.+||+.+.+..
T Consensus 262 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 262 QGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred CCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 67777777754 45788888876443
No 348
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=69.46 E-value=61 Score=28.76 Aligned_cols=13 Identities=8% Similarity=-0.010 Sum_probs=7.4
Q ss_pred cEEEEecCCCcee
Q 010256 421 LFRVFGCSEGSAE 433 (514)
Q Consensus 421 ~i~iwd~~~~~~~ 433 (514)
.+.+||+.+.+..
T Consensus 286 ~~~~yd~~~~~W~ 298 (357)
T 2uvk_A 286 STDIHLWHNGKWD 298 (357)
T ss_dssp CCEEEECC---CE
T ss_pred eEEEEecCCCcee
Confidence 5788998876544
No 349
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=66.96 E-value=74 Score=28.79 Aligned_cols=73 Identities=4% Similarity=0.066 Sum_probs=41.7
Q ss_pred cCeEEEEECCC----CCEEEEe--cCCeEEEEeccC-----CC--ceeeeeccCCCcccccCCceEEEEEe-cCCCcEEE
Q 010256 234 YHINSISNNSD----GETFISA--DDLRINLWNLEI-----SN--QSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLA 299 (514)
Q Consensus 234 ~~v~~~~~~~~----~~~l~s~--~d~~i~iwd~~~-----~~--~~~~~~~~~~~~~~~~~~~i~~v~~~-p~~~~~l~ 299 (514)
..+..|+++|+ ++.|.-. .... +|.+.+ .. ..++.+. -.+....-..+++. .+| .+++
T Consensus 220 ~Gi~gIaLsp~~~~~~~~LYf~plss~~--ly~V~T~~L~~~~~~~~v~~~G-----~kg~~s~~~~~~~D~~~G-~ly~ 291 (381)
T 3q6k_A 220 AGIFGITLGDRDSEGNRPAYYLAGSAIK--VYSVNTKELKQKGGKLNPELLG-----NRGKYNDAIALAYDPKTK-VIFF 291 (381)
T ss_dssp CCEEEEEECCCCTTSCCEEEEEESSCSE--EEEEEHHHHSSTTCCCCCEEEE-----ECCTTCCEEEEEECTTTC-EEEE
T ss_pred cCceEEEecCCcCCCCeEEEEEECCCCc--EEEEEHHHhhCcchhhceEEee-----ecCCCCCcceEEEeCCCC-eEEE
Confidence 56889999998 6777665 3333 343321 11 1111100 01111333456675 566 7788
Q ss_pred EEecCCeEEEEEcCC
Q 010256 300 YSSSKGSIRLIDMRQ 314 (514)
Q Consensus 300 ~~~~dg~i~~wd~~~ 314 (514)
+--....|..|+..+
T Consensus 292 ~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 292 AEANTKQVSCWNTQK 306 (381)
T ss_dssp EESSSSEEEEEETTS
T ss_pred EeccCCeEEEEeCCC
Confidence 878889999999875
No 350
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=66.77 E-value=69 Score=28.39 Aligned_cols=28 Identities=4% Similarity=-0.018 Sum_probs=17.2
Q ss_pred cCCCCEEEEEeCCC------cEEEEecCCCceee
Q 010256 407 SGDGGRVATGSYSN------LFRVFGCSEGSAES 434 (514)
Q Consensus 407 s~~~~~l~s~~~dg------~i~iwd~~~~~~~~ 434 (514)
..++++++.|+.++ .|.++++++++...
T Consensus 314 ~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 314 PWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp EETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence 34778888887543 35566887765544
No 351
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=65.63 E-value=42 Score=35.01 Aligned_cols=34 Identities=9% Similarity=-0.018 Sum_probs=28.9
Q ss_pred ceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 400 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 400 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
.+.+++..++..++++-+.|+++|+|++.++++.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeE
Confidence 4557788888999999999999999999988544
No 352
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=59.09 E-value=89 Score=27.05 Aligned_cols=23 Identities=4% Similarity=0.066 Sum_probs=15.8
Q ss_pred CCCcEEEEEec-C-----CeEEEEEcCCCc
Q 010256 293 THCNMLAYSSS-K-----GSIRLIDMRQSA 316 (514)
Q Consensus 293 ~~~~~l~~~~~-d-----g~i~~wd~~~~~ 316 (514)
++ .+++.|+. + ..+.+||+.+.+
T Consensus 148 ~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 148 MD-LVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp TT-EEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred CC-EEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 44 67777776 2 468888887754
No 353
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=53.57 E-value=27 Score=37.31 Aligned_cols=33 Identities=9% Similarity=-0.019 Sum_probs=28.0
Q ss_pred eeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
+.+++..++..++++-+.|+++|+|++.++++.
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 272 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeE
Confidence 346777788899999999999999999988554
No 354
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=53.07 E-value=1.2e+02 Score=30.13 Aligned_cols=39 Identities=13% Similarity=0.281 Sum_probs=31.4
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeecc
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~ 155 (514)
..|.++.+ +..++++-+.|+++|+|++.++++.....+.
T Consensus 222 ~~Is~~~~----~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~ 260 (729)
T 3f7f_A 222 SVISCKLF----HERYLIVLTQNCHLKIWDLTSFTLIQDYDMV 260 (729)
T ss_dssp CEEEEEEE----TTTEEEEEETTCEEEEEETTTTEEEEEEETT
T ss_pred ceEEEecc----CCcEEEEEEcCCeEEEEEcCCCceEEeeccc
Confidence 34666665 2469999999999999999999988877763
No 355
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=45.46 E-value=1.5e+02 Score=25.61 Aligned_cols=24 Identities=0% Similarity=0.087 Sum_probs=15.9
Q ss_pred cCCCcEEEEEec------CCeEEEEEcCCCc
Q 010256 292 PTHCNMLAYSSS------KGSIRLIDMRQSA 316 (514)
Q Consensus 292 p~~~~~l~~~~~------dg~i~~wd~~~~~ 316 (514)
.++ .+++.|+. -..+.+||+.+.+
T Consensus 157 ~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 157 HNG-MIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp ETT-EEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred ECC-EEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 355 67777764 2358889987754
No 356
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=44.20 E-value=1.8e+02 Score=26.17 Aligned_cols=70 Identities=17% Similarity=0.194 Sum_probs=36.9
Q ss_pred cceeEEEECCC-CCceeecCCCCeEEE-eeCCCCCccccCC---ccc-----ccccceEEEEEcCC-CCEEEEEecCcEE
Q 010256 442 NPMRRQVQTPS-RPSRPLGSLSGVVRR-VKGADNSALDANG---NAF-----DFSMKLLHLAWHPS-ENSIACAASNSLY 510 (514)
Q Consensus 442 ~~v~~~~~~~~-~~~l~s~s~d~~v~i-~~~~~~~~~~~~~---~~~-----~~~~~v~~~~~spd-~~~l~~~~~~~~~ 510 (514)
..+..+.+.|. ...|..+..++.+.. .++.+.+...... ..+ +....+..++++|+ ...|.++...+++
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~ 256 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIY 256 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEE
Confidence 35778888873 344444444454554 3333333211100 000 11245889999996 4667777777665
Q ss_pred E
Q 010256 511 M 511 (514)
Q Consensus 511 i 511 (514)
.
T Consensus 257 ~ 257 (394)
T 3b7f_A 257 R 257 (394)
T ss_dssp E
T ss_pred E
Confidence 4
No 357
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=43.60 E-value=73 Score=30.88 Aligned_cols=59 Identities=15% Similarity=0.030 Sum_probs=35.5
Q ss_pred ceeEEEEecCCCEEEEEeC-------------CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 343 SISDIKFARNGRHILSRDY-------------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
..-.|+|+|.|.+++.-+. ..+.+.+..+ ++....+..+.+. +++.++|+||
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~-g~~~rf~~~P~ga--------------E~TG~~fspD 541 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGC--------------EVTGISFSPD 541 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTT-CCEEEEEECCTTC--------------EEEEEEECTT
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCC-CeEEEEEeCCCCc--------------cCcCeeECCC
Confidence 4577999999997766321 1233444443 4444444433221 2458999999
Q ss_pred CCEEEEE
Q 010256 410 GGRVATG 416 (514)
Q Consensus 410 ~~~l~s~ 416 (514)
++.|+..
T Consensus 542 g~tlfvn 548 (592)
T 3zwu_A 542 QKTLFVG 548 (592)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 9988765
No 358
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=42.65 E-value=97 Score=30.78 Aligned_cols=27 Identities=0% Similarity=-0.155 Sum_probs=22.9
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 407 SGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 407 s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
..+..+|++-+.|.++|+|++++++..
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv 254 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLI 254 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEE
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceE
Confidence 345789999999999999999998543
No 359
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=41.87 E-value=1.1e+02 Score=29.57 Aligned_cols=61 Identities=15% Similarity=0.017 Sum_probs=36.2
Q ss_pred cceeEEEEecCCCEEEEEeC-------------CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC
Q 010256 342 ASISDIKFARNGRHILSRDY-------------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~~~~-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (514)
.....|.|.++|.+.+..+. ..+..++..+ ++....+...... ..+.++|+|
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t-Gel~~fl~~P~~a--------------EpnGiafSP 540 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGC--------------EVTGISFSP 540 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT-CCEEEEEECCTTC--------------EEEEEEECT
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCC-CeEEEEEeCCCCc--------------cccCCEECC
Confidence 45788999999988874221 1444444443 4433333222111 133899999
Q ss_pred CCCEEEEEe
Q 010256 409 DGGRVATGS 417 (514)
Q Consensus 409 ~~~~l~s~~ 417 (514)
|++.|+.+-
T Consensus 541 D~ktLfV~v 549 (592)
T 4a9v_A 541 DQKTLFVGI 549 (592)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEE
Confidence 999887653
No 360
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=38.52 E-value=1e+02 Score=29.86 Aligned_cols=56 Identities=9% Similarity=-0.010 Sum_probs=36.8
Q ss_pred eEEEcCCCCEEEEEeCC------------CcEEEEecCCCceeeeeecCC-CcceeEEEECCCCCceeec
Q 010256 403 ECCLSGDGGRVATGSYS------------NLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 403 ~~~~s~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~ 459 (514)
.|+|+|.|++++.-..+ +.+.+.+..+++ +...+.+. ...++.++|+||++.|.+.
T Consensus 480 NL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~-~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGE-IRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCC-EEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred ceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCe-EEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 58999999976643322 235555666553 33445444 4678899999998877554
No 361
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=37.90 E-value=1.9e+02 Score=24.65 Aligned_cols=218 Identities=8% Similarity=-0.019 Sum_probs=105.0
Q ss_pred CeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCC
Q 010256 235 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~ 314 (514)
.|..++.......++ . ||.|+.|-.....++-. |. .....|..++..... .++. . ||.+..|-...
T Consensus 25 ~i~~ia~G~~h~~~l-~-~G~v~~wG~n~~Gqlg~-----p~---~~~~~i~~ia~G~~h--s~~l-~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL-K-GGKVLGWGANLNGQLTM-----PA---ATQSGVDAIAAGNYH--SLAL-K-DGEVIAWGGNE 90 (282)
T ss_dssp SCCEEEECSSEEEEE-E-TTEEEEEECCSSSTTSC-----CG---GGGSCCCEEEECSSE--EEEE-E-TTEEEEEECCT
T ss_pred CCcEEEeCCCeEEEE-E-CCEEEEEeCCCCCCCCC-----Cc---cCCCCEEEEEeCCCE--EEEE-E-CCEEEEeeCCC
Confidence 466666554433333 3 89999997665443310 10 113357777766543 4444 4 89999998654
Q ss_pred CccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccc
Q 010256 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 394 (514)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (514)
...+..+.. ....|..++...+...++ . +|.|..|-....++.-.....
T Consensus 91 ~Gqlg~P~~----------------~~~~v~~ia~G~~hs~al-~-~G~v~~wG~n~~gqlg~~~~~------------- 139 (282)
T 3qhy_B 91 DGQTTVPAE----------------ARSGVDAIAAGAWASYAL-K-DGKVIAWGDDSDGQTTVPAEA------------- 139 (282)
T ss_dssp TSTTCCCGG----------------GSSSEEEEEEETTEEEEE-E-TTEEEEEECCTTSTTSCCGGG-------------
T ss_pred CCCCCCCcc----------------cCCCeEEEECcCCEEEEE-e-CCeEEEecCCCCCcCCCCccC-------------
Confidence 322211000 013577777765443444 4 889999987653332110000
Q ss_pred cCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCC
Q 010256 395 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNS 474 (514)
Q Consensus 395 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~ 474 (514)
...|..++... ...+.-. ||.|+.|-.....++-.. ..-...|..++...... ++. .||.+...-....-
T Consensus 140 ---~~~i~~i~~G~--~~~~~l~-~G~v~~wG~n~~gqlg~p-~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~g 209 (282)
T 3qhy_B 140 ---QSGVTALDGGV--YTALAVK-NGGVIAWGDNYFGQTTVP-AEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYK 209 (282)
T ss_dssp ---GSSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTSCC-GGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTS
T ss_pred ---CCCeEEEEccc--CEEEEEE-CCEEEEecCCCCCCCCCc-eecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCC
Confidence 01122444332 2222234 788999976543232111 11123455555543322 222 47777762111110
Q ss_pred ccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEE
Q 010256 475 ALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 512 (514)
Q Consensus 475 ~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~ 512 (514)
.+ +...+....|..++-..+...+++ ++.++.|
T Consensus 210 --ql-g~p~~~~~~v~~i~~G~~h~~al~--~g~v~~w 242 (282)
T 3qhy_B 210 --QT-TVPTEALSGVSAIASGEWYSLALK--NGKVIAW 242 (282)
T ss_dssp --TT-CCCGGGGSSCCEEEECSSCEEEEE--TTEEEEE
T ss_pred --CC-CCCcccCCCceEEEcCCCEEEEEE--CCEEEEe
Confidence 00 011112345777776555444444 6667666
No 362
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=37.88 E-value=1.2e+02 Score=29.19 Aligned_cols=58 Identities=9% Similarity=-0.036 Sum_probs=38.3
Q ss_pred eeeEEEcCCCCEEEEEeC------------CCcEEEEecCCCceeeeeecCC-CcceeEEEECCCCCceeec
Q 010256 401 KFECCLSGDGGRVATGSY------------SNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~ 459 (514)
--.++|+++|.+.+.... .+.|+.++..+++ +...+.+. ...++.++|+||++.|.++
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGe-l~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGE-IRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCC-EEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCe-EEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 347999999998773321 1256677776663 33444433 3568999999999877554
No 363
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=35.19 E-value=2.2e+02 Score=24.52 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=17.0
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCcee
Q 010256 409 DGGRVATGSYS-----NLFRVFGCSEGSAE 433 (514)
Q Consensus 409 ~~~~l~s~~~d-----g~i~iwd~~~~~~~ 433 (514)
++++++.|+.+ ..+.+||+.+.+..
T Consensus 206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 66777777643 35778998876544
No 364
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=34.23 E-value=25 Score=37.64 Aligned_cols=36 Identities=8% Similarity=0.025 Sum_probs=29.9
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDN 70 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~ 70 (514)
...+.+++..++..+|++-+.|+++|||++.+++..
T Consensus 237 ~~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 237 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 272 (1139)
T ss_dssp TTCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEE
T ss_pred cceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeE
Confidence 345667777788899999999999999999988753
No 365
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=31.68 E-value=2.5e+02 Score=24.27 Aligned_cols=98 Identities=17% Similarity=0.105 Sum_probs=46.9
Q ss_pred CCCEEEEEeCCCcEEEEecCCCc------eeeeeecCCCcceeEEEECCCCCceeecCCCCe-EEEeeCCCCC--cccc-
Q 010256 409 DGGRVATGSYSNLFRVFGCSEGS------AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV-VRRVKGADNS--ALDA- 478 (514)
Q Consensus 409 ~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~-v~i~~~~~~~--~~~~- 478 (514)
++.+++..+..|.++--.+.... .....+..+ +.+-.+....+...++..+.+|. +++ .-..+. ...-
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf-~~~~v~~~gr~a~ 185 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRF-KESSVRAMGCNTT 185 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEE-EGGGSCBCCTTCC
T ss_pred CCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEE-EHHHcCccCCCCC
Confidence 56678889999999988764211 111223334 33333333333344555555554 444 111111 0000
Q ss_pred --CCcccccccceEEEEEcCCCCEEEEEecCc
Q 010256 479 --NGNAFDFSMKLLHLAWHPSENSIACAASNS 508 (514)
Q Consensus 479 --~~~~~~~~~~v~~~~~spd~~~l~~~~~~~ 508 (514)
..-.+.....|.++..-+++..|++.+.++
T Consensus 186 Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G 217 (307)
T 1zi0_A 186 GVRGIRLGEGDKVVSLIVPRGDGAILTATQNG 217 (307)
T ss_dssp CEECCCCCTTCCEEEEECCCSSCEEEEEETTS
T ss_pred CeEeEEeCCCCEEEEEEEecCCCEEEEEEcCC
Confidence 001122345666665555555566666554
No 366
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=28.98 E-value=2.9e+02 Score=24.14 Aligned_cols=119 Identities=7% Similarity=0.086 Sum_probs=55.7
Q ss_pred cCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEE-EEeCCeEEEEEcc
Q 010256 292 PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL-SRDYMTLKLWDIN 370 (514)
Q Consensus 292 p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-~~~~~~i~iwd~~ 370 (514)
|+. ..+++.+.+|.|+--.+....... ..... +... ..+..+........|+ ..+.|.+.-+...
T Consensus 3 ~~e-~~~v~lT~~G~IKr~~~~~~~~~~--~~~~~----------lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~ 68 (323)
T 1wp5_A 3 ASE-DVIVTVTKDGYVKRTSLRSYAASN--GQDFA----------MKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVH 68 (323)
T ss_dssp SCC-EEEEEEETTCEEEEEEHHHHHHTT--TCCCC----------CCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGG
T ss_pred cCC-cEEEEEeCCCEEEEeEHHHhhhcC--ccccc----------cCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHH
Confidence 455 678889999999977654321100 00000 1111 2344444443344444 4455776665543
Q ss_pred CCCCceeeeeeccccccccccccccCCccceeeEEEcC--CCCEEEEEeCCCcEEEEecC
Q 010256 371 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG--DGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~ 428 (514)
. -+.........+......+...+.+..+ +...+ ++.+|+..+.+|.++--.+.
T Consensus 69 e--lp~~~r~a~G~~i~~~i~L~~~e~Iv~~--~~~~~~~~~~~ll~~T~~G~iKrt~l~ 124 (323)
T 1wp5_A 69 E--LPDIRWKDLGQHIANIIPIDRDEEIIKA--IPINDFELNGYFLFVTRNGMVKKTELK 124 (323)
T ss_dssp G--SCBCCTTSCCEEGGGTSCCCTTCCEEEE--EEESCTTSSCEEEEEETTSEEEEEEGG
T ss_pred H--CcCCCCCCCCcChhhccCCCCCCEEEEE--EEecccCCCceEEEEeCCCeEEEeEHH
Confidence 2 1111000111111111222233333211 22322 36678889999999988774
No 367
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=28.36 E-value=1.6e+02 Score=20.82 Aligned_cols=26 Identities=8% Similarity=0.268 Sum_probs=14.9
Q ss_pred eEEEEecCCCEEEEEeCCeEEEEEcc
Q 010256 345 SDIKFARNGRHILSRDYMTLKLWDIN 370 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~~~~~i~iwd~~ 370 (514)
..+.+..+|.+++...++...+|...
T Consensus 52 ~~l~l~~dGNLVl~~~~~~~~vW~S~ 77 (111)
T 3mez_A 52 CTLRLNNRGQLEIHSANSNTPVWVYP 77 (111)
T ss_dssp CEEEECTTSCEEEECSSCSSCSEEES
T ss_pred EEEEEcCCCcEEEEeCCCCEEEEEec
Confidence 34667777777766444443466433
No 368
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=28.26 E-value=4.5e+02 Score=26.04 Aligned_cols=159 Identities=8% Similarity=0.074 Sum_probs=74.3
Q ss_pred CCCCEEEEe-cC----CeEEEEeccCCCceeeeeccC-C-CcccccCCceEEEEEec-CCCcEEEEEecCC------eEE
Q 010256 243 SDGETFISA-DD----LRINLWNLEISNQSFNIVDVK-P-ANMEDLTEVITSAEFHP-THCNMLAYSSSKG------SIR 308 (514)
Q Consensus 243 ~~~~~l~s~-~d----~~i~iwd~~~~~~~~~~~~~~-~-~~~~~~~~~i~~v~~~p-~~~~~l~~~~~dg------~i~ 308 (514)
.++.+++.| .+ ..+.+||..+..-. .+... | ..+...... .+++..+ ++ .+++.|+.++ .+.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~--~~~~~~p~~~~p~~R~~-hs~~~~~~~~-~lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKID--MKNIEVSSSEVPVARMC-HTFTTISRNN-QLLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEE--EEECCCCCSCCCCCCBS-CEEEEETTTT-EEEEECCBSSTTCBCCCCE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEE--EeccCCCCCCCCccccc-eEEEEEccCC-EEEEEcCCCCCCCccccEE
Confidence 456666666 32 45788888754322 11100 0 001111111 2333343 55 7888887543 477
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-C--CeEEEEEccCCCCceeeeeecccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y--MTLKLWDINMDSGPVATFQVHEHL 385 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~--~~i~iwd~~~~~~~~~~~~~~~~~ 385 (514)
+||+.+..-. .+.. .+.++ .. .+++.-.++++++.|+ + +.+.+||..+ .. -..+......
T Consensus 472 ~yd~~t~~W~--~~~~-----~p~~R-------~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t-~~-W~~~~~~g~~ 534 (695)
T 2zwa_A 472 IFDMKTREWS--MIKS-----LSHTR-------FR-HSACSLPDGNVLILGGVTEGPAMLLYNVTE-EI-FKDVTPKDEF 534 (695)
T ss_dssp EEETTTTEEE--ECCC-----CSBCC-------BS-CEEEECTTSCEEEECCBCSSCSEEEEETTT-TE-EEECCCSSGG
T ss_pred EEeCCCCcEE--ECCC-----CCCCc-------cc-ceEEEEcCCEEEEECCCCCCCCEEEEECCC-Cc-eEEccCCCCC
Confidence 8888764321 0111 11000 11 1222223677777764 2 3688898875 22 1111110000
Q ss_pred ccccccccccCCccceeeEEEcCC-CCEEEEEeC--C-----CcEEEEecCCCc
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGD-GGRVATGSY--S-----NLFRVFGCSEGS 431 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~--d-----g~i~iwd~~~~~ 431 (514)
.. ..+ .-..+.+..+ +++++.|+. + +.+.+||+.+..
T Consensus 535 p~---~r~------~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 535 FQ---NSL------VSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp GG---SCC------BSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CC---ccc------ceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 00 000 0013555655 667777765 2 458899998875
No 369
>2loj_A Putative cytoplasmic protein; pathogenic bacterial protein, PSI-biology, northeast structu genomics consortium (NESG); NMR {Salmonella enterica subsp}
Probab=21.02 E-value=1.6e+02 Score=18.33 Aligned_cols=40 Identities=13% Similarity=0.050 Sum_probs=28.9
Q ss_pred cccccccchhhccccCcccccccccceEEEEEcCCCCeEEE
Q 010256 12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLAT 52 (514)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~t 52 (514)
.....++-.+.|+... ...+.|.+.+..+.....|++++|
T Consensus 23 ~~~~~i~S~~Ll~g~~-~v~I~H~G~~Y~LR~Tr~GKLILT 62 (63)
T 2loj_A 23 AAERRVNSQALLGPDG-KVIIDHNGQEYLLRKTQAGKLLLT 62 (63)
T ss_dssp SCCCEEEGGGSSTTTC-EEEEEETTEEEEEEEETTTEEEEE
T ss_pred CccceEcHHHHhCCCC-EEEEEeCCeEEEeEEccCCceeec
Confidence 3344566666665332 246789999999999999998876
Done!