BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010257
(514 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GW20|Y5390_ARATH Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis
thaliana GN=At5g03900 PE=1 SV=2
Length = 523
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/526 (63%), Positives = 413/526 (78%), Gaps = 18/526 (3%)
Query: 1 MTSISTCFTTTPK-SRFFFTPLRP-SINLKPP---DSFPRIQPLPFPRISGKIPGSRVLV 55
M +STC +P+ ++ + +P I L+ P SFPR+ L +S + +R +
Sbjct: 1 MACVSTCLILSPRLTQVGLSSKKPFLIRLRSPVDRYSFPRM--LTERCLSTRRKFNRHGI 58
Query: 56 PVAKAST--DVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNE 113
V KA++ V+ + PG +VESDKLP DVR RAMDAVD C RRVT+GDVA + GLK+ E
Sbjct: 59 AVVKAASLDKVSGAIKPGGLVESDKLPTDVRKRAMDAVDECGRRVTVGDVASRGGLKVTE 118
Query: 114 AQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSI 173
AQ ALQA+AADTDGFLEVSDEGDVLYVFP +YR KLAAKS R+++EP ++KAK A +Y
Sbjct: 119 AQTALQAIAADTDGFLEVSDEGDVLYVFPRDYRTKLAAKSLRIQIEPFLEKAKGAVDYLA 178
Query: 174 RVLFGTALIASIVIVFTAIIAILSSKSDDDDRGRRR-RSFDSGFNIFISPSDLFWYWDPY 232
RV FGTALIASIVIV+T+IIA+LSSKS+DD+R RRR RS+DSGFN +I+P DL WYWDP
Sbjct: 179 RVSFGTALIASIVIVYTSIIALLSSKSEDDNRQRRRGRSYDSGFNFYINPVDLLWYWDPN 238
Query: 233 YYRRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEEL 292
YY RRR + +D+ K MNFI+SVFSFVFG+GDPNQGIEE+RW++IG+YI S GGVV A+EL
Sbjct: 239 YYNRRRAR-EDEGKGMNFIESVFSFVFGDGDPNQGIEEERWQMIGQYITSRGGVVAADEL 297
Query: 293 APYLDIDRT---MSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAA-SQRIGRKEY 348
APYLD+ + M+DESY+LPVLLRFDGQPE+DEEGNILY FPS QRTA+ S R RKEY
Sbjct: 298 APYLDVPSSKSAMNDESYILPVLLRFDGQPELDEEGNILYCFPSLQRTASGSSR--RKEY 355
Query: 349 VGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPN 408
VG+ W D + +EK F+EKKW+FSKT+ SER + IGLG +NLFGVI+L +L EM+V P
Sbjct: 356 VGK-WFDWVADMEKFFKEKKWQFSKTSTSERALVIGLGAVNLFGVIVLNTLLNEMSVRPG 414
Query: 409 GFLKFVAYIFPLLQIYAGSFFAIPAVRWFLNLQRNADIEKRNRTREKYARALKSPDISLR 468
GFL FV I+PLLQIYAGSFF IP +RWF ++N IE RN+ R ++ARAL+SPDI+LR
Sbjct: 415 GFLTFVKNIYPLLQIYAGSFFTIPLIRWFSIKRKNNQIENRNKARLQFARALESPDIALR 474
Query: 469 RKLLSARDMAQKTFIGQDRIVYSTDRDLIEQDYEAREWEKRFREIE 514
RKLLSARDMAQKT IG+DRIVYSTDRD++EQ+YE EW++RF+E+E
Sbjct: 475 RKLLSARDMAQKTVIGKDRIVYSTDRDMMEQNYETDEWDRRFKELE 520
>sp|Q8FDG5|PRIM_ECOL6 DNA primase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928
/ UPEC) GN=dnaG PE=3 SV=1
Length = 581
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 12 PKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRV 53
P S F F L P ++L PD R+ L P IS ++PG +
Sbjct: 367 PLSAFLFNSLMPQVDLSTPDGRARLSTLALPLIS-QVPGETL 407
>sp|P0ABS7|PRIM_SHIFL DNA primase OS=Shigella flexneri GN=dnaG PE=3 SV=1
Length = 581
Score = 33.5 bits (75), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 12 PKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRV 53
P S F F L P ++L PD R+ L P IS ++PG +
Sbjct: 367 PLSAFLFNSLMPQVDLSTPDGRARLSTLALPLIS-QVPGETL 407
>sp|P0ABS5|PRIM_ECOLI DNA primase OS=Escherichia coli (strain K12) GN=dnaG PE=1 SV=1
Length = 581
Score = 33.5 bits (75), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 12 PKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRV 53
P S F F L P ++L PD R+ L P IS ++PG +
Sbjct: 367 PLSAFLFNSLMPQVDLSTPDGRARLSTLALPLIS-QVPGETL 407
>sp|P0ABS6|PRIM_ECO57 DNA primase OS=Escherichia coli O157:H7 GN=dnaG PE=3 SV=1
Length = 581
Score = 33.5 bits (75), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 12 PKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRV 53
P S F F L P ++L PD R+ L P IS ++PG +
Sbjct: 367 PLSAFLFNSLMPQVDLSTPDGRARLSTLALPLIS-QVPGETL 407
>sp|A8EUE3|SECA_ARCB4 Protein translocase subunit SecA OS=Arcobacter butzleri (strain
RM4018) GN=secA PE=3 SV=1
Length = 872
Score = 33.1 bits (74), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 374 TNMSERGMAIGLGG--LNLFGVIILGAMLQEMAVTPNGFLK-------------FVAYIF 418
TNM+ RG+ I L L+L G+ I+G E N +++
Sbjct: 502 TNMAGRGVDIKLTKEILDLGGLAIIGTERHESRRIDNQLRGRSGRQGDVGESQFYLSLED 561
Query: 419 PLLQIYAGSFFAIPAVRWFLNLQRNADIEKRNRTR--EKYARALKSPDISLRRKLLSARD 476
LL+I+ I + L ++ IE R TR E + ++S R+ LL D
Sbjct: 562 NLLRIFGSD--RIKGIMERLGIEEGEHIESRMVTRAVENAQKKVESMHFESRKHLLEYDD 619
Query: 477 MAQKTFIGQDRIVYSTDRDLIEQDYE 502
+A + Q +++YS DL++ DY+
Sbjct: 620 VANQ----QRKVIYSFRNDLLKPDYD 641
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 188,880,834
Number of Sequences: 539616
Number of extensions: 8237438
Number of successful extensions: 20384
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 20376
Number of HSP's gapped (non-prelim): 13
length of query: 514
length of database: 191,569,459
effective HSP length: 122
effective length of query: 392
effective length of database: 125,736,307
effective search space: 49288632344
effective search space used: 49288632344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)