Query 010258
Match_columns 514
No_of_seqs 219 out of 1495
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 23:19:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 2.4E-16 8.3E-21 130.2 8.1 81 424-506 9-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 1E-15 3.5E-20 121.2 4.9 70 435-507 4-73 (75)
3 2ep4_A Ring finger protein 24; 99.5 3.3E-14 1.1E-18 111.8 6.0 57 454-511 13-69 (74)
4 2ect_A Ring finger protein 126 99.5 2.3E-14 8E-19 113.7 5.2 58 454-512 13-70 (78)
5 2kiz_A E3 ubiquitin-protein li 99.5 5E-14 1.7E-18 109.4 6.4 55 454-509 12-66 (69)
6 1iym_A EL5; ring-H2 finger, ub 99.4 3.1E-14 1.1E-18 105.8 3.4 51 454-505 3-54 (55)
7 1v87_A Deltex protein 2; ring- 99.4 2.3E-13 7.9E-18 115.1 5.1 53 456-508 25-96 (114)
8 3ng2_A RNF4, snurf, ring finge 99.4 2.3E-13 7.9E-18 105.5 4.7 57 454-511 8-68 (71)
9 2ecm_A Ring finger and CHY zin 99.4 4E-13 1.4E-17 99.6 4.9 50 455-505 4-54 (55)
10 2ea6_A Ring finger protein 4; 99.3 4.7E-13 1.6E-17 102.7 4.5 52 454-506 13-68 (69)
11 2xeu_A Ring finger protein 4; 99.3 4.2E-13 1.4E-17 101.6 3.1 54 456-510 3-60 (64)
12 3dpl_R Ring-box protein 1; ubi 99.3 1.4E-12 4.9E-17 112.4 5.5 51 454-505 35-100 (106)
13 2djb_A Polycomb group ring fin 99.3 3.5E-12 1.2E-16 100.3 6.4 56 454-512 13-68 (72)
14 2ecl_A Ring-box protein 2; RNF 99.3 9.6E-13 3.3E-17 106.9 2.5 51 455-506 14-76 (81)
15 1chc_A Equine herpes virus-1 r 99.2 3.6E-12 1.2E-16 98.4 4.1 49 455-506 4-52 (68)
16 2ct2_A Tripartite motif protei 99.2 7.5E-12 2.6E-16 100.4 5.9 54 454-507 13-69 (88)
17 2d8s_A Cellular modulator of i 99.2 7.2E-12 2.4E-16 103.2 5.5 56 454-510 13-74 (80)
18 2ecy_A TNF receptor-associated 99.2 6.3E-12 2.1E-16 97.2 4.7 53 454-509 13-65 (66)
19 2d8t_A Dactylidin, ring finger 99.2 2.8E-12 9.7E-17 100.6 2.6 51 454-508 13-63 (71)
20 2yur_A Retinoblastoma-binding 99.2 1.2E-11 4.1E-16 98.1 6.0 54 454-510 13-68 (74)
21 2ecn_A Ring finger protein 141 99.2 2.9E-12 9.8E-17 99.7 2.2 52 454-510 13-64 (70)
22 1t1h_A Gspef-atpub14, armadill 99.2 4.9E-12 1.7E-16 100.3 3.6 56 454-512 6-61 (78)
23 2ysl_A Tripartite motif-contai 99.2 1E-11 3.5E-16 96.9 4.5 52 454-508 18-71 (73)
24 4a0k_B E3 ubiquitin-protein li 99.2 1.8E-12 6E-17 114.3 -0.1 52 454-506 46-112 (117)
25 2ecw_A Tripartite motif-contai 99.2 1.5E-11 5.1E-16 97.4 5.2 56 454-512 17-77 (85)
26 2csy_A Zinc finger protein 183 99.2 1.1E-11 3.8E-16 99.3 4.5 48 454-505 13-60 (81)
27 1g25_A CDK-activating kinase a 99.2 1.4E-11 4.8E-16 94.9 4.0 56 456-511 3-60 (65)
28 2ecv_A Tripartite motif-contai 99.2 2.3E-11 7.9E-16 96.3 5.3 56 454-512 17-77 (85)
29 4ayc_A E3 ubiquitin-protein li 99.2 7.5E-12 2.6E-16 110.3 2.4 48 455-506 52-99 (138)
30 3lrq_A E3 ubiquitin-protein li 99.1 8.4E-12 2.9E-16 104.6 2.1 55 454-510 20-74 (100)
31 3fl2_A E3 ubiquitin-protein li 99.1 1.9E-11 6.6E-16 105.3 4.3 55 454-511 50-105 (124)
32 2egp_A Tripartite motif-contai 99.1 6E-12 2.1E-16 99.3 0.8 56 454-512 10-71 (79)
33 4ap4_A E3 ubiquitin ligase RNF 99.1 2.6E-11 8.7E-16 103.0 4.0 55 454-509 5-63 (133)
34 2y43_A E3 ubiquitin-protein li 99.1 1.6E-11 5.6E-16 101.7 2.0 53 455-511 21-74 (99)
35 3ztg_A E3 ubiquitin-protein li 99.1 6E-11 2E-15 96.7 5.2 50 454-506 11-62 (92)
36 2ysj_A Tripartite motif-contai 99.1 7.7E-11 2.6E-15 90.1 5.0 44 454-500 18-63 (63)
37 4ap4_A E3 ubiquitin ligase RNF 99.1 4E-11 1.4E-15 101.8 2.6 56 454-510 70-129 (133)
38 1jm7_A BRCA1, breast cancer ty 99.0 5.7E-11 2E-15 99.4 3.1 55 455-512 20-76 (112)
39 1rmd_A RAG1; V(D)J recombinati 99.0 6E-11 2E-15 100.9 2.9 54 455-511 22-75 (116)
40 2ecj_A Tripartite motif-contai 99.0 9.1E-11 3.1E-15 87.5 3.3 44 454-500 13-58 (58)
41 1z6u_A NP95-like ring finger p 99.0 9.5E-11 3.2E-15 105.7 4.0 50 455-507 77-126 (150)
42 2ckl_A Polycomb group ring fin 99.0 1.2E-10 4.2E-15 98.0 4.1 51 454-507 13-63 (108)
43 2ckl_B Ubiquitin ligase protei 99.0 7.5E-11 2.6E-15 106.2 3.0 51 455-507 53-103 (165)
44 3hct_A TNF receptor-associated 99.0 1.2E-10 4.2E-15 99.8 3.5 55 454-511 16-70 (118)
45 3l11_A E3 ubiquitin-protein li 99.0 6.2E-11 2.1E-15 100.7 0.3 50 454-506 13-62 (115)
46 2kr4_A Ubiquitin conjugation f 98.9 2.8E-10 9.5E-15 93.6 3.1 55 454-512 12-66 (85)
47 2ct0_A Non-SMC element 1 homol 98.9 4E-10 1.4E-14 92.3 3.6 51 454-506 13-64 (74)
48 2kre_A Ubiquitin conjugation f 98.9 4E-10 1.4E-14 95.7 3.2 55 454-512 27-81 (100)
49 2c2l_A CHIP, carboxy terminus 98.9 4E-10 1.4E-14 106.4 3.1 56 454-512 206-261 (281)
50 1wgm_A Ubiquitin conjugation f 98.9 4.8E-10 1.7E-14 94.9 3.3 55 454-512 20-75 (98)
51 1e4u_A Transcriptional repress 98.9 6.9E-10 2.4E-14 90.7 3.7 55 454-509 9-65 (78)
52 3knv_A TNF receptor-associated 98.9 4.9E-10 1.7E-14 100.2 2.5 50 454-506 29-78 (141)
53 1jm7_B BARD1, BRCA1-associated 98.8 4.6E-10 1.6E-14 96.1 0.7 53 454-512 20-73 (117)
54 1bor_A Transcription factor PM 98.8 1E-09 3.5E-14 83.3 0.9 49 454-509 4-52 (56)
55 2vje_A E3 ubiquitin-protein li 98.8 2.9E-09 9.8E-14 83.3 3.1 48 454-505 6-56 (64)
56 2yu4_A E3 SUMO-protein ligase 98.8 2.6E-09 9E-14 89.0 2.8 56 454-512 5-69 (94)
57 2y1n_A E3 ubiquitin-protein li 98.8 3.8E-09 1.3E-13 109.5 4.6 50 456-508 332-381 (389)
58 3hcs_A TNF receptor-associated 98.7 3.4E-09 1.2E-13 95.6 3.2 55 454-511 16-70 (170)
59 2vje_B MDM4 protein; proto-onc 98.7 7.3E-09 2.5E-13 80.7 3.0 48 454-505 5-55 (63)
60 2f42_A STIP1 homology and U-bo 98.7 6.9E-09 2.3E-13 97.4 3.2 56 454-512 104-159 (179)
61 4ic3_A E3 ubiquitin-protein li 98.7 4.3E-09 1.5E-13 84.0 1.2 44 455-506 23-67 (74)
62 1vyx_A ORF K3, K3RING; zinc-bi 98.5 1E-07 3.5E-12 74.6 4.3 49 454-505 4-58 (60)
63 2ecg_A Baculoviral IAP repeat- 98.5 3E-08 1E-12 79.0 1.1 45 455-507 24-69 (75)
64 3k1l_B Fancl; UBC, ring, RWD, 98.5 2.2E-08 7.5E-13 103.0 0.3 52 454-505 306-372 (381)
65 1wim_A KIAA0161 protein; ring 98.4 8.4E-08 2.9E-12 79.2 3.1 49 455-503 4-61 (94)
66 2bay_A PRE-mRNA splicing facto 98.4 8.3E-08 2.8E-12 75.1 1.6 52 457-512 4-56 (61)
67 2ea5_A Cell growth regulator w 98.3 3.1E-07 1.1E-11 72.9 4.0 46 454-507 13-59 (68)
68 2yho_A E3 ubiquitin-protein li 98.3 1E-07 3.4E-12 77.6 0.9 44 455-506 17-61 (79)
69 3htk_C E3 SUMO-protein ligase 98.3 1.6E-07 5.3E-12 93.4 0.9 57 454-512 179-238 (267)
70 3t6p_A Baculoviral IAP repeat- 98.2 3.1E-07 1.1E-11 93.5 0.7 45 454-506 293-338 (345)
71 3vk6_A E3 ubiquitin-protein li 98.0 4.1E-06 1.4E-10 72.8 4.3 46 459-506 4-49 (101)
72 3nw0_A Non-structural maintena 97.3 8.9E-05 3E-09 72.0 3.3 51 455-507 179-230 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 92.5 0.047 1.6E-06 44.9 2.0 35 456-490 3-38 (101)
74 2lri_C Autoimmune regulator; Z 88.6 0.2 6.9E-06 39.9 2.2 47 455-504 11-60 (66)
75 2ko5_A Ring finger protein Z; 87.0 0.29 9.9E-06 42.4 2.4 50 455-510 27-77 (99)
76 3m62_A Ubiquitin conjugation f 86.1 0.33 1.1E-05 55.7 3.0 55 454-512 889-944 (968)
77 1we9_A PHD finger family prote 86.1 0.12 4.2E-06 39.9 -0.4 50 454-503 4-58 (64)
78 2k16_A Transcription initiatio 83.4 0.24 8.1E-06 39.4 0.1 53 454-506 16-71 (75)
79 3lqh_A Histone-lysine N-methyl 79.7 0.93 3.2E-05 42.6 2.8 48 457-504 3-64 (183)
80 2xb1_A Pygopus homolog 2, B-ce 78.8 0.31 1E-05 41.8 -0.8 49 457-505 4-63 (105)
81 2yt5_A Metal-response element- 72.1 0.58 2E-05 36.2 -0.7 52 454-505 4-63 (66)
82 2kgg_A Histone demethylase jar 71.5 1.2 4.3E-05 33.3 1.0 44 458-501 4-52 (52)
83 1wep_A PHF8; structural genomi 71.1 3.6 0.00012 33.1 3.8 48 456-504 12-64 (79)
84 2vpb_A Hpygo1, pygopus homolog 70.7 2.7 9.2E-05 33.2 2.8 48 454-501 6-64 (65)
85 1f62_A Transcription factor WS 69.6 1.4 4.6E-05 32.5 0.9 45 458-502 2-49 (51)
86 1wil_A KIAA1045 protein; ring 69.0 2.3 7.7E-05 36.3 2.2 32 454-489 13-47 (89)
87 2ri7_A Nucleosome-remodeling f 67.9 1.4 4.8E-05 39.7 0.8 47 455-502 7-58 (174)
88 2ysm_A Myeloid/lymphoid or mix 67.0 1.1 3.7E-05 38.0 -0.2 48 454-501 5-55 (111)
89 2l5u_A Chromodomain-helicase-D 65.7 2.1 7.3E-05 33.1 1.3 47 454-503 9-58 (61)
90 1mm2_A MI2-beta; PHD, zinc fin 64.1 1.2 4E-05 34.6 -0.5 50 454-506 7-59 (61)
91 2lv9_A Histone-lysine N-methyl 64.0 1.2 4.1E-05 37.6 -0.5 47 455-502 27-75 (98)
92 3u5n_A E3 ubiquitin-protein li 60.5 1.2 4.3E-05 41.5 -1.1 47 455-504 6-55 (207)
93 1wem_A Death associated transc 59.9 2.7 9.4E-05 33.4 1.0 46 457-503 17-70 (76)
94 2yql_A PHD finger protein 21A; 59.8 0.75 2.6E-05 34.9 -2.2 46 454-502 7-55 (56)
95 1wev_A Riken cDNA 1110020M19; 58.9 1 3.5E-05 37.4 -1.8 51 455-505 15-74 (88)
96 1wew_A DNA-binding family prot 57.5 2.2 7.5E-05 34.4 0.0 49 455-504 15-73 (78)
97 3v43_A Histone acetyltransfera 56.7 8.8 0.0003 32.7 3.7 46 456-501 5-62 (112)
98 2l43_A N-teminal domain from h 56.7 2.5 8.5E-05 35.1 0.2 56 454-509 23-81 (88)
99 1weo_A Cellulose synthase, cat 56.5 14 0.00049 31.7 4.8 50 456-505 16-69 (93)
100 1weu_A Inhibitor of growth fam 53.4 6 0.0002 33.4 2.0 46 455-504 35-86 (91)
101 1wen_A Inhibitor of growth fam 52.4 5.3 0.00018 32.0 1.5 47 455-505 15-67 (71)
102 1xwh_A Autoimmune regulator; P 50.7 2.4 8.1E-05 33.2 -0.8 50 454-506 6-58 (66)
103 2e6r_A Jumonji/ARID domain-con 50.5 1.3 4.3E-05 37.2 -2.6 50 454-503 14-66 (92)
104 3v43_A Histone acetyltransfera 50.5 3.6 0.00012 35.1 0.2 47 456-502 61-111 (112)
105 1fp0_A KAP-1 corepressor; PHD 48.7 6.1 0.00021 33.3 1.4 47 454-503 23-72 (88)
106 3i2d_A E3 SUMO-protein ligase 46.0 12 0.0004 38.9 3.2 49 457-507 250-301 (371)
107 2puy_A PHD finger protein 21A; 45.7 1.1 3.9E-05 34.2 -3.3 48 455-505 4-54 (60)
108 2e6s_A E3 ubiquitin-protein li 45.6 3.1 0.00011 33.9 -0.9 45 458-502 28-76 (77)
109 2lbm_A Transcriptional regulat 44.3 18 0.00062 32.8 3.8 45 455-502 62-116 (142)
110 3mpx_A FYVE, rhogef and PH dom 43.2 5 0.00017 40.3 0.0 51 455-505 374-431 (434)
111 4fo9_A E3 SUMO-protein ligase 42.7 14 0.00047 38.3 3.1 49 457-507 216-267 (360)
112 2kwj_A Zinc finger protein DPF 41.6 6.9 0.00024 33.5 0.6 44 458-501 3-59 (114)
113 3shb_A E3 ubiquitin-protein li 41.5 3.1 0.00011 34.0 -1.5 46 458-503 28-77 (77)
114 1zbd_B Rabphilin-3A; G protein 41.5 12 0.00039 33.5 2.1 34 454-487 53-88 (134)
115 3kv5_D JMJC domain-containing 41.0 5.7 0.0002 42.3 0.0 44 459-502 39-87 (488)
116 3ask_A E3 ubiquitin-protein li 40.9 4.1 0.00014 39.7 -1.0 46 458-503 176-225 (226)
117 3c6w_A P28ING5, inhibitor of g 38.9 4.7 0.00016 31.2 -0.8 44 455-502 8-57 (59)
118 4gne_A Histone-lysine N-methyl 38.2 17 0.00058 31.4 2.6 49 454-508 13-67 (107)
119 2cs3_A Protein C14ORF4, MY039 38.0 31 0.0011 29.3 4.0 37 455-492 14-52 (93)
120 3asl_A E3 ubiquitin-protein li 37.8 5.2 0.00018 31.9 -0.7 46 458-503 20-69 (70)
121 2vnf_A ING 4, P29ING4, inhibit 37.3 4.9 0.00017 31.0 -0.9 43 456-502 10-58 (60)
122 3t7l_A Zinc finger FYVE domain 35.1 21 0.00072 29.5 2.5 49 455-503 19-73 (90)
123 2cu8_A Cysteine-rich protein 2 34.7 16 0.00055 28.0 1.7 39 457-506 10-48 (76)
124 3ql9_A Transcriptional regulat 34.6 27 0.00092 31.2 3.3 45 455-502 56-110 (129)
125 1z60_A TFIIH basal transcripti 34.5 12 0.00043 29.3 1.0 43 457-500 16-58 (59)
126 1joc_A EEA1, early endosomal a 34.1 21 0.00072 31.2 2.5 35 455-489 68-103 (125)
127 1iml_A CRIP, cysteine rich int 33.4 18 0.00062 27.8 1.8 43 455-502 26-69 (76)
128 2ku3_A Bromodomain-containing 33.1 29 0.00099 27.7 3.0 50 454-503 14-66 (71)
129 2yw8_A RUN and FYVE domain-con 32.6 22 0.00076 28.7 2.3 52 454-505 17-74 (82)
130 3kqi_A GRC5, PHD finger protei 32.2 12 0.00042 29.7 0.6 46 458-503 11-61 (75)
131 2ysm_A Myeloid/lymphoid or mix 31.7 6.8 0.00023 33.0 -1.0 47 458-504 56-105 (111)
132 1wfk_A Zinc finger, FYVE domai 30.9 25 0.00084 29.1 2.3 51 454-504 7-64 (88)
133 1z2q_A LM5-1; membrane protein 30.8 26 0.00089 28.4 2.4 53 454-506 19-79 (84)
134 1wee_A PHD finger family prote 30.4 15 0.00053 28.8 0.9 48 455-503 15-66 (72)
135 3kv4_A PHD finger protein 8; e 28.2 14 0.00047 39.1 0.4 47 457-503 5-56 (447)
136 1dvp_A HRS, hepatocyte growth 28.0 23 0.00078 33.2 1.8 34 456-489 161-195 (220)
137 1x4u_A Zinc finger, FYVE domai 27.9 27 0.00093 28.2 2.0 35 454-488 12-47 (84)
138 2g6q_A Inhibitor of growth pro 27.6 9.3 0.00032 29.8 -0.8 43 456-502 11-59 (62)
139 3zyq_A Hepatocyte growth facto 27.2 25 0.00084 33.4 1.9 49 456-504 164-220 (226)
140 1y02_A CARP2, FYVE-ring finger 26.8 7.5 0.00026 34.3 -1.6 46 456-502 19-65 (120)
141 2dj7_A Actin-binding LIM prote 26.7 28 0.00097 27.4 1.9 39 456-505 15-53 (80)
142 3o7a_A PHD finger protein 13 v 26.6 7.6 0.00026 28.9 -1.4 42 461-502 8-51 (52)
143 2zet_C Melanophilin; complex, 26.0 27 0.00094 31.8 1.9 32 455-486 67-100 (153)
144 1vfy_A Phosphatidylinositol-3- 25.2 38 0.0013 26.7 2.4 32 457-488 12-44 (73)
145 3o70_A PHD finger protein 13; 24.7 23 0.00079 27.9 1.0 48 454-502 17-66 (68)
146 2kwj_A Zinc finger protein DPF 23.3 4.1 0.00014 34.9 -3.9 49 457-505 59-110 (114)
147 3fyb_A Protein of unknown func 22.7 32 0.0011 30.0 1.6 12 481-492 42-53 (104)
148 2o35_A Hypothetical protein DU 22.6 32 0.0011 30.0 1.6 12 481-492 43-54 (105)
149 1x63_A Skeletal muscle LIM-pro 22.1 74 0.0025 24.4 3.5 41 457-507 16-56 (82)
150 2co8_A NEDD9 interacting prote 21.7 38 0.0013 26.6 1.7 39 456-505 15-53 (82)
151 2d8y_A Eplin protein; LIM doma 21.6 1E+02 0.0035 24.4 4.3 26 458-485 17-42 (91)
152 2dar_A PDZ and LIM domain prot 21.2 52 0.0018 26.1 2.5 40 456-507 25-64 (90)
153 1x61_A Thyroid receptor intera 20.8 53 0.0018 24.6 2.3 34 456-491 33-66 (72)
154 1x4k_A Skeletal muscle LIM-pro 20.0 71 0.0024 23.8 2.9 38 458-505 7-44 (72)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=130.24 Aligned_cols=81 Identities=37% Similarity=0.728 Sum_probs=68.9
Q ss_pred CCCCCCCCCChHHHhcCCceeeeccccccccccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccC
Q 010258 424 MSSIGSIPAPNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGD 503 (514)
Q Consensus 424 ~SSigp~PApke~IdSLP~~~~~ks~k~~see~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~ 503 (514)
.......+++++.|+.||...+....... .+..+|+||++.|..++.++.|||+|.||..||..||+. +.+||+||..
T Consensus 9 ~~~~~~~~~s~~~i~~lp~~~~~~~~~~~-~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~ 86 (91)
T 2l0b_A 9 SHMVANPPASKESIDALPEILVTEDHGAV-GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCM 86 (91)
T ss_dssp CCSSCCCCCCHHHHHTSCEEECCTTCSSS-SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCB
T ss_pred CCCcCCCCCCHHHHHhCCCeeeccccccc-CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCcc
Confidence 34456778899999999998887654332 456789999999999999999999999999999999996 7899999998
Q ss_pred cCC
Q 010258 504 ICK 506 (514)
Q Consensus 504 V~e 506 (514)
+..
T Consensus 87 ~~~ 89 (91)
T 2l0b_A 87 FPP 89 (91)
T ss_dssp SSC
T ss_pred CCC
Confidence 864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1e-15 Score=121.23 Aligned_cols=70 Identities=40% Similarity=0.922 Sum_probs=58.4
Q ss_pred HHHhcCCceeeeccccccccccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCC
Q 010258 435 EVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKP 507 (514)
Q Consensus 435 e~IdSLP~~~~~ks~k~~see~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ 507 (514)
..++.||...+..... ..+..+|+||++.|..++.++.|||+|.||..||.+||+. +.+||+||+.+...
T Consensus 4 ~~i~~lp~~~~~~~~~--~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNNH--QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGPS 73 (75)
T ss_dssp CCCSSCCCEEBCSSSC--SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred hhHhhCCcEEecCccc--cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence 4567788877765432 2456789999999999999999999999999999999996 78999999988654
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.3e-14 Score=111.82 Aligned_cols=57 Identities=33% Similarity=0.869 Sum_probs=50.1
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 511 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~P 511 (514)
.+..+|+||++.|..+..+..|+|+|.||..||.+|++. +.+||+||..|.....++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 69 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQLAQLS 69 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSCCSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccccccC
Confidence 346689999999999888999999999999999999996 779999999997765543
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.48 E-value=2.3e-14 Score=113.71 Aligned_cols=58 Identities=36% Similarity=0.924 Sum_probs=51.7
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 512 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn 512 (514)
.+..+|+||++.|..++.+..|+|+|.||..||.+|++. +.+||+||..+...+..++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 446789999999999888899999999999999999986 7899999999988777654
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=5e-14 Score=109.40 Aligned_cols=55 Identities=47% Similarity=0.997 Sum_probs=48.4
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDS 509 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s 509 (514)
....+|+||++.|..++.++.++|+|.||..||.+|++. +.+||+||..|.....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQLP 66 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSCCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCcCC
Confidence 456789999999998888999999999999999999996 7889999999866543
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.44 E-value=3.1e-14 Score=105.84 Aligned_cols=51 Identities=47% Similarity=1.133 Sum_probs=46.0
Q ss_pred cccccccccccccccCCeeEEeC-CCCcccHHHHHHHHHhcCCCCCccccCcC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEIHRVCPLCRGDIC 505 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLP-CgHvFH~eCIdkWLke~~~TCPLCRa~V~ 505 (514)
++..+|+||++.|..++.+..++ |+|.||..||.+|++. +.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 34568999999999988889998 9999999999999996 889999999874
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.38 E-value=2.3e-13 Score=115.06 Aligned_cols=53 Identities=23% Similarity=0.470 Sum_probs=42.9
Q ss_pred cccccccccccccCC---------------eeEEeCCCCcccHHHHHHHHHh----cCCCCCccccCcCCCC
Q 010258 456 VAQCYICLLEYEEGD---------------SVRVLPCHHEFHKTCVDKWLKE----IHRVCPLCRGDICKPD 508 (514)
Q Consensus 456 ~~EC~ICLEefe~gd---------------~VrvLPCgHvFH~eCIdkWLke----~~~TCPLCRa~V~e~~ 508 (514)
+.+|+||++.|..+. .++.++|+|.||..||..||.. .+.+||+||..+....
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 458999999997653 3458899999999999999952 3678999999886543
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.38 E-value=2.3e-13 Score=105.48 Aligned_cols=57 Identities=30% Similarity=0.594 Sum_probs=48.8
Q ss_pred cccccccccccccccC----CeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCC
Q 010258 454 EEVAQCYICLLEYEEG----DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 511 (514)
Q Consensus 454 ee~~EC~ICLEefe~g----d~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~P 511 (514)
++..+|+||++.|..+ +.++.++|||.||..||.+|++. +.+||+||..+...+..+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 68 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHP 68 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheee
Confidence 4567899999998764 55689999999999999999996 789999999998776654
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.37 E-value=4e-13 Score=99.62 Aligned_cols=50 Identities=40% Similarity=0.812 Sum_probs=43.4
Q ss_pred ccccccccccccccC-CeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcC
Q 010258 455 EVAQCYICLLEYEEG-DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 505 (514)
Q Consensus 455 e~~EC~ICLEefe~g-d~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~ 505 (514)
+..+|+||++.|..+ +.++.++|+|.||..||.+|++. ..+||+||..|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 456799999999654 45788999999999999999997 689999999874
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.7e-13 Score=102.71 Aligned_cols=52 Identities=31% Similarity=0.632 Sum_probs=44.6
Q ss_pred cccccccccccccccC----CeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCC
Q 010258 454 EEVAQCYICLLEYEEG----DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 506 (514)
Q Consensus 454 ee~~EC~ICLEefe~g----d~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e 506 (514)
.+..+|+||++.|... ..++.++|+|.||..||..|++. +.+||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 4567899999999864 34588999999999999999996 8899999998864
No 11
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.33 E-value=4.2e-13 Score=101.63 Aligned_cols=54 Identities=30% Similarity=0.594 Sum_probs=46.4
Q ss_pred cccccccccccccC----CeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCC
Q 010258 456 VAQCYICLLEYEEG----DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL 510 (514)
Q Consensus 456 ~~EC~ICLEefe~g----d~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~ 510 (514)
..+|+||++.|..+ +.++.++|||.||..||.+|++. +.+||+||..+...+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYH 60 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEE
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCcccee
Confidence 46799999999764 45688999999999999999996 88999999998776543
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.31 E-value=1.4e-12 Score=112.44 Aligned_cols=51 Identities=33% Similarity=0.634 Sum_probs=43.3
Q ss_pred cccccccccccccccCC---------------eeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcC
Q 010258 454 EEVAQCYICLLEYEEGD---------------SVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 505 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd---------------~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~ 505 (514)
.+++.|+||++.|.... .++.++|+|.||..||.+||+. +.+||+||+++.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 35678999999998541 3678899999999999999996 889999999854
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=3.5e-12 Score=100.31 Aligned_cols=56 Identities=21% Similarity=0.472 Sum_probs=47.1
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 512 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn 512 (514)
.+...|+||++.|.++ +..++|+|.||..||..|++. +..||+||..+...+..++
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 13 TPYILCSICKGYLIDA--TTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CGGGSCTTTSSCCSSC--EECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred CCCCCCCCCChHHHCc--CEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 4467899999998874 333499999999999999986 7899999999988877655
No 14
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=9.6e-13 Score=106.88 Aligned_cols=51 Identities=37% Similarity=0.888 Sum_probs=40.5
Q ss_pred cccccccccccccc-----------CCeeEEeC-CCCcccHHHHHHHHHhcCCCCCccccCcCC
Q 010258 455 EVAQCYICLLEYEE-----------GDSVRVLP-CHHEFHKTCVDKWLKEIHRVCPLCRGDICK 506 (514)
Q Consensus 455 e~~EC~ICLEefe~-----------gd~VrvLP-CgHvFH~eCIdkWLke~~~TCPLCRa~V~e 506 (514)
++.+|+||++.|.. ++.++.++ |+|.||..||.+||+. +.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 34568888888754 34455665 9999999999999996 7899999998754
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.24 E-value=3.6e-12 Score=98.42 Aligned_cols=49 Identities=31% Similarity=0.845 Sum_probs=42.6
Q ss_pred ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCC
Q 010258 455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 506 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e 506 (514)
...+|+||++.+.. .++.++|||.||..||..|++. +.+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 45679999999865 3688999999999999999996 7899999998854
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=7.5e-12 Score=100.41 Aligned_cols=54 Identities=28% Similarity=0.620 Sum_probs=45.5
Q ss_pred cccccccccccccccCCe-eEEeCCCCcccHHHHHHHHHhc--CCCCCccccCcCCC
Q 010258 454 EEVAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLKEI--HRVCPLCRGDICKP 507 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~-VrvLPCgHvFH~eCIdkWLke~--~~TCPLCRa~V~e~ 507 (514)
.+..+|+||++.|...+. .+.++|||.||..||..|++.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 456789999999988654 6888999999999999999962 37899999987654
No 17
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=7.2e-12 Score=103.16 Aligned_cols=56 Identities=30% Similarity=0.786 Sum_probs=45.8
Q ss_pred cccccccccccccccCCeeEEeCCC-----CcccHHHHHHHHHhcC-CCCCccccCcCCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCH-----HEFHKTCVDKWLKEIH-RVCPLCRGDICKPDSL 510 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCg-----HvFH~eCIdkWLke~~-~TCPLCRa~V~e~~s~ 510 (514)
.+..+|.||+++|.+++.+ ++||+ |.||..||++||...+ .+||+||..+.....+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~ 74 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKL 74 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCS
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCccc
Confidence 4567899999999877766 69996 9999999999999632 5899999998654443
No 18
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=6.3e-12 Score=97.17 Aligned_cols=53 Identities=25% Similarity=0.521 Sum_probs=44.5
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDS 509 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s 509 (514)
.+...|+||++.+..+ +.++|||.||..||.+|++.....||+||..+...+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 4467899999998875 4489999999999999996446789999999877654
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=2.8e-12 Score=100.63 Aligned_cols=51 Identities=33% Similarity=0.558 Sum_probs=43.5
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD 508 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~ 508 (514)
.+..+|+||++.+... +.++|+|.||..||..|++. +..||+||..|....
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPEDF 63 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHHH
T ss_pred CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHhh
Confidence 4467899999998764 77899999999999999996 789999999886543
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.22 E-value=1.2e-11 Score=98.13 Aligned_cols=54 Identities=28% Similarity=0.657 Sum_probs=44.9
Q ss_pred cccccccccccccccCCeeEEeC-CCCcccHHHHHHHHHhc-CCCCCccccCcCCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEI-HRVCPLCRGDICKPDSL 510 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLP-CgHvFH~eCIdkWLke~-~~TCPLCRa~V~e~~s~ 510 (514)
.+...|+||++.|.++ +.++ |||.||..||..|++.. ...||+||..+...+.+
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 68 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTT
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcccc
Confidence 4467899999999875 6799 99999999999999852 26899999987666554
No 21
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.9e-12 Score=99.72 Aligned_cols=52 Identities=35% Similarity=0.926 Sum_probs=45.0
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL 510 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~ 510 (514)
.+..+|+||++.+.. +.++|+|.||..||.+|++. +..||+||..+...+..
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGANES 64 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCCcc
Confidence 346789999999876 78999999999999999995 88999999999766543
No 22
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.21 E-value=4.9e-12 Score=100.28 Aligned_cols=56 Identities=20% Similarity=0.488 Sum_probs=47.6
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 512 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn 512 (514)
.+...|+||++.|.++ +.++|||.||..||..|++..+.+||+||..+...+..|+
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n 61 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEEC
T ss_pred cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccC
Confidence 4467899999998875 6789999999999999998547889999999987766655
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1e-11 Score=96.89 Aligned_cols=52 Identities=27% Similarity=0.552 Sum_probs=43.4
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh--cCCCCCccccCcCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE--IHRVCPLCRGDICKPD 508 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke--~~~TCPLCRa~V~e~~ 508 (514)
.+..+|+||++.|..+ +.++|||.||..||..|++. ....||+||..+...+
T Consensus 18 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred ccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 4467899999998863 67799999999999999972 3568999999987654
No 24
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.19 E-value=1.8e-12 Score=114.28 Aligned_cols=52 Identities=33% Similarity=0.638 Sum_probs=1.4
Q ss_pred cccccccccccccccC-------------C--eeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCC
Q 010258 454 EEVAQCYICLLEYEEG-------------D--SVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 506 (514)
Q Consensus 454 ee~~EC~ICLEefe~g-------------d--~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e 506 (514)
.+++.|+||++.|... + .+..++|+|.||..||.+||+. +.+||+||+++..
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 112 (117)
T ss_dssp CCC-----------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeeee
Confidence 3457899999999753 2 2445689999999999999996 8899999998643
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.19 E-value=1.5e-11 Score=97.37 Aligned_cols=56 Identities=27% Similarity=0.520 Sum_probs=46.6
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhc-----CCCCCccccCcCCCCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI-----HRVCPLCRGDICKPDSLPS 512 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~-----~~TCPLCRa~V~e~~s~Pn 512 (514)
.+..+|+||++.|..+ +.++|+|.||..||..|++.. ...||+||..+...+..++
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n 77 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPN 77 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEEC
T ss_pred ccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcC
Confidence 3456899999998875 578999999999999999862 5689999999887665544
No 26
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=99.29 Aligned_cols=48 Identities=23% Similarity=0.581 Sum_probs=42.1
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 505 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~ 505 (514)
.+...|+||++.|..+ ++++|+|.||..||..|++. ...||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 3456899999998764 57999999999999999986 789999999885
No 27
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=1.4e-11 Score=94.91 Aligned_cols=56 Identities=23% Similarity=0.411 Sum_probs=45.5
Q ss_pred ccccccccc-ccccCCe-eEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCC
Q 010258 456 VAQCYICLL-EYEEGDS-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 511 (514)
Q Consensus 456 ~~EC~ICLE-efe~gd~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~P 511 (514)
...|+||++ .|..+.. ++.++|||.||..||.+|+.+....||+||..+...+..+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccccee
Confidence 457999999 7777643 3568999999999999998764678999999997766543
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.3e-11 Score=96.30 Aligned_cols=56 Identities=29% Similarity=0.546 Sum_probs=46.9
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh-----cCCCCCccccCcCCCCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE-----IHRVCPLCRGDICKPDSLPS 512 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke-----~~~TCPLCRa~V~e~~s~Pn 512 (514)
.+..+|+||++.|..+ +.++|+|.||..||..|++. ....||+||..+...+..++
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n 77 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN 77 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCS
T ss_pred cCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCcc
Confidence 3457899999998775 56799999999999999985 26789999999987776665
No 29
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.16 E-value=7.5e-12 Score=110.27 Aligned_cols=48 Identities=38% Similarity=0.871 Sum_probs=42.0
Q ss_pred ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCC
Q 010258 455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 506 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e 506 (514)
+...|+||++.|..+ +.+||||.||..||..|+.. +.+||+||.++..
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKR-KIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCC
Confidence 345799999998764 78999999999999999996 7899999998854
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.14 E-value=8.4e-12 Score=104.62 Aligned_cols=55 Identities=25% Similarity=0.662 Sum_probs=44.5
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL 510 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~ 510 (514)
.+...|+||++.|..+ +..++|||.||..||..|++.....||+||..+...+..
T Consensus 20 ~~~~~C~IC~~~~~~p--~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~ 74 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA--RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV 74 (100)
T ss_dssp HHHTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE
T ss_pred CCCCCCccCCccccCc--cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhH
Confidence 3467899999998763 333899999999999999997337999999998665543
No 31
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.14 E-value=1.9e-11 Score=105.28 Aligned_cols=55 Identities=27% Similarity=0.459 Sum_probs=45.1
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCC-CCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK-PDSLP 511 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e-~~s~P 511 (514)
.+...|+||++.|..+ +.++|||.||..||..|+......||+||..+.. ....+
T Consensus 50 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 105 (124)
T 3fl2_A 50 EETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQV 105 (124)
T ss_dssp HHHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCC
T ss_pred ccCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCC
Confidence 3456899999999875 6789999999999999998545599999999977 33334
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.14 E-value=6e-12 Score=99.33 Aligned_cols=56 Identities=27% Similarity=0.483 Sum_probs=46.1
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhc------CCCCCccccCcCCCCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI------HRVCPLCRGDICKPDSLPS 512 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~------~~TCPLCRa~V~e~~s~Pn 512 (514)
.+..+|+||++.|..+ +.++|||.||..||..|++.. ...||+||..+...+..++
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n 71 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQAN 71 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTC
T ss_pred ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcC
Confidence 4567899999998775 558999999999999999852 5689999999977655554
No 33
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.12 E-value=2.6e-11 Score=102.95 Aligned_cols=55 Identities=29% Similarity=0.581 Sum_probs=46.7
Q ss_pred cccccccccccccccC----CeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCC
Q 010258 454 EEVAQCYICLLEYEEG----DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDS 509 (514)
Q Consensus 454 ee~~EC~ICLEefe~g----d~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s 509 (514)
.+..+|+||++.|.++ +.++.++|||.||..||.+||+. +.+||+||..+.....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCccccc
Confidence 3457899999999764 45689999999999999999996 7799999998876544
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.10 E-value=1.6e-11 Score=101.74 Aligned_cols=53 Identities=25% Similarity=0.686 Sum_probs=43.9
Q ss_pred ccccccccccccccCCeeEEe-CCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCC
Q 010258 455 EVAQCYICLLEYEEGDSVRVL-PCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 511 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvL-PCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~P 511 (514)
+...|+||++.|..+ +.+ +|||.||..||..|+.. +..||+||..+...+..+
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~ 74 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKN 74 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEE
T ss_pred CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCc
Confidence 456899999998874 455 89999999999999995 789999999887654443
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.10 E-value=6e-11 Score=96.73 Aligned_cols=50 Identities=24% Similarity=0.594 Sum_probs=42.4
Q ss_pred cccccccccccccccCCeeEEeC-CCCcccHHHHHHHHHhc-CCCCCccccCcCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEI-HRVCPLCRGDICK 506 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLP-CgHvFH~eCIdkWLke~-~~TCPLCRa~V~e 506 (514)
.+...|+||++.|.++ +.++ |||.||..||..|+... +..||+||..+..
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 62 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 62 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCC
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCC
Confidence 4567899999999875 7889 99999999999999752 3689999999743
No 36
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=7.7e-11 Score=90.06 Aligned_cols=44 Identities=30% Similarity=0.614 Sum_probs=37.7
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh--cCCCCCcc
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE--IHRVCPLC 500 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke--~~~TCPLC 500 (514)
.+..+|+||++.|.++ +.++|||.||..||.+|++. ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4567899999998875 67899999999999999984 35689998
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.06 E-value=4e-11 Score=101.78 Aligned_cols=56 Identities=29% Similarity=0.559 Sum_probs=47.2
Q ss_pred cccccccccccccccC----CeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCC
Q 010258 454 EEVAQCYICLLEYEEG----DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL 510 (514)
Q Consensus 454 ee~~EC~ICLEefe~g----d~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~ 510 (514)
++..+|+||++.|... ..++.++|||.||..||.+||+. +.+||+||..+...+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYH 129 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcce
Confidence 4567899999998763 34588999999999999999996 78999999999776543
No 38
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=5.7e-11 Score=99.41 Aligned_cols=55 Identities=36% Similarity=0.646 Sum_probs=44.6
Q ss_pred ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhc--CCCCCccccCcCCCCCCCC
Q 010258 455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI--HRVCPLCRGDICKPDSLPS 512 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~--~~TCPLCRa~V~e~~s~Pn 512 (514)
+..+|+||++.|..+ +.++|||.||..||..|+... ...||+||..+......++
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES 76 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCC
T ss_pred CCCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCcc
Confidence 356799999998775 558999999999999999852 2489999999887665543
No 39
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.04 E-value=6e-11 Score=100.94 Aligned_cols=54 Identities=26% Similarity=0.498 Sum_probs=45.2
Q ss_pred ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCC
Q 010258 455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 511 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~P 511 (514)
+...|+||++.+.++ +.++|||.||..||..|++.....||+||..+...+..+
T Consensus 22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75 (116)
T ss_dssp HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBC
T ss_pred CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccc
Confidence 456899999998764 568999999999999999964678999999987665443
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=9.1e-11 Score=87.51 Aligned_cols=44 Identities=32% Similarity=0.881 Sum_probs=37.2
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh--cCCCCCcc
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE--IHRVCPLC 500 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke--~~~TCPLC 500 (514)
.+...|+||++.|..+ +.++|+|.||..||..|++. .+..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3467899999999875 56899999999999999653 46789998
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.03 E-value=9.5e-11 Score=105.71 Aligned_cols=50 Identities=24% Similarity=0.489 Sum_probs=43.3
Q ss_pred ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCC
Q 010258 455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKP 507 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ 507 (514)
+...|+||++.|..+ +.++|||.||..||..|+......||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 456899999998875 66899999999999999996445899999999876
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.02 E-value=1.2e-10 Score=98.03 Aligned_cols=51 Identities=25% Similarity=0.707 Sum_probs=43.0
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKP 507 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ 507 (514)
.+...|+||++.|.++ +..++|||.||..||..|++. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCc--CEeCCCCChhhHHHHHHHHHh-CCcCcCCCcccccc
Confidence 4567899999998764 444499999999999999996 78999999998764
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.02 E-value=7.5e-11 Score=106.16 Aligned_cols=51 Identities=25% Similarity=0.566 Sum_probs=42.6
Q ss_pred ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCC
Q 010258 455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKP 507 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ 507 (514)
+...|+||++.|..+ +..++|||.||..||..|++..+..||+||..+...
T Consensus 53 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 53 SELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 456899999998863 444599999999999999996577899999988543
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.01 E-value=1.2e-10 Score=99.81 Aligned_cols=55 Identities=29% Similarity=0.634 Sum_probs=45.6
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 511 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~P 511 (514)
.+...|+||++.+..+ +.++|||.||..||..|++.....||+||..+...+..+
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhccc
Confidence 4567899999998875 678999999999999999964559999999987655443
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.97 E-value=6.2e-11 Score=100.69 Aligned_cols=50 Identities=30% Similarity=0.672 Sum_probs=42.8
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 506 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e 506 (514)
.+...|+||++.|..+ +.++|||.||..||..|+......||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3467899999998875 7789999999999999998656789999998753
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.94 E-value=2.8e-10 Score=93.61 Aligned_cols=55 Identities=11% Similarity=0.048 Sum_probs=48.1
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 512 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn 512 (514)
.+...|+||++.|.++ ++++|||.|+..||..||.. +.+||+|+..+...+..|+
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn 66 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPV 66 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEEC
T ss_pred chheECcccCchhcCC---eECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchH
Confidence 3467899999999986 88999999999999999996 8899999999877666655
No 47
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=4e-10 Score=92.30 Aligned_cols=51 Identities=25% Similarity=0.539 Sum_probs=41.3
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhc-CCCCCccccCcCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI-HRVCPLCRGDICK 506 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~-~~TCPLCRa~V~e 506 (514)
+...+|+||++.+..++ ....|+|.||..||.+||+.. +.+||+||.+...
T Consensus 13 ~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 44678999999998763 233799999999999999862 2789999998743
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.91 E-value=4e-10 Score=95.73 Aligned_cols=55 Identities=11% Similarity=0.062 Sum_probs=48.8
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 512 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn 512 (514)
.+...|+||++.|.++ ++++|||.|+..||..||.. +.+||+|+..+...+..|+
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn 81 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPV 81 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEEC
T ss_pred cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceEC
Confidence 4567899999999987 88999999999999999995 8899999999988777665
No 49
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.91 E-value=4e-10 Score=106.35 Aligned_cols=56 Identities=13% Similarity=0.265 Sum_probs=47.8
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 512 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn 512 (514)
.+...|+||++.|.++ +++||||.||..||..|+.....+||+||.++...+..||
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n 261 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPN 261 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEEC
T ss_pred CcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCccc
Confidence 3467899999999986 7899999999999999999645569999999977766665
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.91 E-value=4.8e-10 Score=94.94 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=48.5
Q ss_pred cccccccccccccccCCeeEEeCCC-CcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCH-HEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 512 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCg-HvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn 512 (514)
.+...|+||++.|.++ ++++|| |.|+..||..||.. +.+||+||..+...+..|+
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn 75 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPN 75 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEEC
T ss_pred cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEc
Confidence 3467899999999987 789999 99999999999996 7899999999988777665
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.89 E-value=6.9e-10 Score=90.69 Aligned_cols=55 Identities=20% Similarity=0.511 Sum_probs=43.4
Q ss_pred cccccccccccccccCCeeEEe--CCCCcccHHHHHHHHHhcCCCCCccccCcCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVL--PCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDS 509 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvL--PCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s 509 (514)
++..+|+||++.+...+. ..+ +|||.||..||..|+......||+||..+.....
T Consensus 9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 456789999999865433 344 4999999999999987556789999998876544
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.88 E-value=4.9e-10 Score=100.24 Aligned_cols=50 Identities=18% Similarity=0.305 Sum_probs=42.7
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 506 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e 506 (514)
++...|+||++.+.++ +.++|||.||..||..|++.....||+||.++..
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 4567899999999876 6689999999999999998644589999997643
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=4.6e-10 Score=96.13 Aligned_cols=53 Identities=26% Similarity=0.501 Sum_probs=44.2
Q ss_pred cccccccccccccccCCeeEEe-CCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVL-PCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 512 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvL-PCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn 512 (514)
.+...|+||++.|..+ +.+ +|||.||..||..|+. ..||+||..+...+..++
T Consensus 20 ~~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n 73 (117)
T 1jm7_B 20 EKLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKIN 73 (117)
T ss_dssp HHTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCC
T ss_pred hhCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcccccccc
Confidence 3467899999999875 566 9999999999999997 689999999876655554
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.78 E-value=1e-09 Score=83.28 Aligned_cols=49 Identities=22% Similarity=0.532 Sum_probs=41.0
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDS 509 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s 509 (514)
.+...|+||++.|..+ +.|+|||.||..||..| ...||+||+.+..+..
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGAD 52 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSS
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC----CCCCCcCCcEeecCCc
Confidence 4567899999999875 77999999999999884 4689999999876544
No 55
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.76 E-value=2.9e-09 Score=83.28 Aligned_cols=48 Identities=29% Similarity=0.583 Sum_probs=39.9
Q ss_pred cccccccccccccccCCeeEEe--CCCCc-ccHHHHHHHHHhcCCCCCccccCcC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVL--PCHHE-FHKTCVDKWLKEIHRVCPLCRGDIC 505 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvL--PCgHv-FH~eCIdkWLke~~~TCPLCRa~V~ 505 (514)
++..+|.||++.+.+. +.+ ||||. |+..|+..|++. +..||+||++|.
T Consensus 6 ~~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 3456799999986653 444 99999 899999999985 789999999874
No 56
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=2.6e-09 Score=88.98 Aligned_cols=56 Identities=20% Similarity=0.376 Sum_probs=44.6
Q ss_pred cccccccccccccccCCeeEEeC-CCCcccHHHHHHHHHhc-----CCCCCc--cccC-cCCCCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEI-----HRVCPL--CRGD-ICKPDSLPS 512 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLP-CgHvFH~eCIdkWLke~-----~~TCPL--CRa~-V~e~~s~Pn 512 (514)
.+...|+||++.|.++ ++++ |||.|+..||..||... ..+||+ |+.. +...+..|+
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn 69 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQD 69 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEEC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCC
Confidence 3457899999999986 7776 99999999999999863 258999 9876 655555554
No 57
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.75 E-value=3.8e-09 Score=109.49 Aligned_cols=50 Identities=28% Similarity=0.752 Sum_probs=42.8
Q ss_pred cccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCC
Q 010258 456 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD 508 (514)
Q Consensus 456 ~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~ 508 (514)
..+|+||++.+.. ++.+||||.||..||..|+......||+||..+....
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 4689999999866 4889999999999999999844789999999886543
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.74 E-value=3.4e-09 Score=95.62 Aligned_cols=55 Identities=29% Similarity=0.634 Sum_probs=45.9
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 511 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~P 511 (514)
.+...|+||++.|.++ +.++|||.||..||.+|++.....||+||..+...+.++
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhh
Confidence 4567899999998875 668999999999999999864569999999987655443
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.68 E-value=7.3e-09 Score=80.75 Aligned_cols=48 Identities=21% Similarity=0.525 Sum_probs=39.4
Q ss_pred cccccccccccccccCCeeEEe--CCCCc-ccHHHHHHHHHhcCCCCCccccCcC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVL--PCHHE-FHKTCVDKWLKEIHRVCPLCRGDIC 505 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvL--PCgHv-FH~eCIdkWLke~~~TCPLCRa~V~ 505 (514)
+...+|.||++...+. ..+ ||||. ||..|+..|.+. ...||+||++|.
T Consensus 5 ~~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 3456799999986552 444 99998 999999999985 689999999884
No 60
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.67 E-value=6.9e-09 Score=97.41 Aligned_cols=56 Identities=13% Similarity=0.255 Sum_probs=47.4
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 512 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn 512 (514)
.+...|+||++.|.++ +++||||.|+..||..||.....+||+|+.++...+..||
T Consensus 104 p~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN 159 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPN 159 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred cHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcch
Confidence 3467799999999986 7889999999999999998633479999999887776665
No 61
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.66 E-value=4.3e-09 Score=84.01 Aligned_cols=44 Identities=30% Similarity=0.609 Sum_probs=37.9
Q ss_pred ccccccccccccccCCeeEEeCCCCc-ccHHHHHHHHHhcCCCCCccccCcCC
Q 010258 455 EVAQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDICK 506 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~e 506 (514)
+...|+||++.+.+ .+.+||||. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 45679999998766 478899999 999999998 589999998754
No 62
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.47 E-value=1e-07 Score=74.61 Aligned_cols=49 Identities=29% Similarity=0.725 Sum_probs=38.3
Q ss_pred cccccccccccccccCCeeEEeCCC--C---cccHHHHHHHHHh-cCCCCCccccCcC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCH--H---EFHKTCVDKWLKE-IHRVCPLCRGDIC 505 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCg--H---vFH~eCIdkWLke-~~~TCPLCRa~V~ 505 (514)
++...|.||+++. ++.+ ++||. | .||..||.+|+.. .+.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4567899999984 3334 68955 4 9999999999984 3678999998764
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=3e-08 Score=79.03 Aligned_cols=45 Identities=29% Similarity=0.596 Sum_probs=37.0
Q ss_pred ccccccccccccccCCeeEEeCCCCc-ccHHHHHHHHHhcCCCCCccccCcCCC
Q 010258 455 EVAQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDICKP 507 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~e~ 507 (514)
+..+|+||++.+.. ++.+||||. ||..|+.. ...||+||..+...
T Consensus 24 ~~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC-----CCCCccCCceecCc
Confidence 45679999998766 467899999 99999953 36899999988653
No 64
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.46 E-value=2.2e-08 Score=103.04 Aligned_cols=52 Identities=27% Similarity=0.751 Sum_probs=40.5
Q ss_pred cccccccccccccccCCee----E-EeCCCCcccHHHHHHHHHhcC----------CCCCccccCcC
Q 010258 454 EEVAQCYICLLEYEEGDSV----R-VLPCHHEFHKTCVDKWLKEIH----------RVCPLCRGDIC 505 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~V----r-vLPCgHvFH~eCIdkWLke~~----------~TCPLCRa~V~ 505 (514)
+...+|+||++.+.++..+ . .+.|+|.||..||.+||+... ..||+||++|.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 4567899999998873322 1 346999999999999998522 47999999875
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.43 E-value=8.4e-08 Score=79.15 Aligned_cols=49 Identities=22% Similarity=0.548 Sum_probs=39.8
Q ss_pred ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh----c---CCCCCc--cccC
Q 010258 455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE----I---HRVCPL--CRGD 503 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke----~---~~TCPL--CRa~ 503 (514)
+..+|+||++.+..++.+...+|+|.||..||..|++. . ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35679999999887765566689999999999999973 1 237999 9987
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.37 E-value=8.3e-08 Score=75.13 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=45.0
Q ss_pred ccccccccccccCCeeEEe-CCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258 457 AQCYICLLEYEEGDSVRVL-PCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 512 (514)
Q Consensus 457 ~EC~ICLEefe~gd~VrvL-PCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn 512 (514)
..|+||++.+.++ +++ +|||.|.+.||.+||++ +.+||+++.++...+..|+
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~ 56 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEI 56 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEEC
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEEC
Confidence 4699999999975 666 89999999999999996 6789999999988777664
No 67
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=3.1e-07 Score=72.86 Aligned_cols=46 Identities=28% Similarity=0.694 Sum_probs=38.0
Q ss_pred cccccccccccccccCCeeEEeCCCCc-ccHHHHHHHHHhcCCCCCccccCcCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDICKP 507 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~e~ 507 (514)
.+...|.||++.... ++.+||+|. ||..|+.. ...||+||..|...
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc-----CCCCCCCCcchhce
Confidence 346789999998655 688999999 99999983 46899999988653
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.32 E-value=1e-07 Score=77.58 Aligned_cols=44 Identities=27% Similarity=0.714 Sum_probs=36.8
Q ss_pred ccccccccccccccCCeeEEeCCCCc-ccHHHHHHHHHhcCCCCCccccCcCC
Q 010258 455 EVAQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDICK 506 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~e 506 (514)
+...|.||++.+.. ++.+||||. ||..|+..| ..||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 35679999998665 588999999 999999876 389999998753
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.25 E-value=1.6e-07 Score=93.37 Aligned_cols=57 Identities=23% Similarity=0.452 Sum_probs=45.4
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh-cCCCCCc--cccCcCCCCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE-IHRVCPL--CRGDICKPDSLPS 512 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke-~~~TCPL--CRa~V~e~~s~Pn 512 (514)
.....|+||++.|.++ |+.+.|||.|++.||..|++. ....||+ |+..+...+..|+
T Consensus 179 ~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN 238 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRD 238 (267)
T ss_dssp BCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEEC
T ss_pred ceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcC
Confidence 3466899999999875 555689999999999999985 2357999 9998876655544
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.16 E-value=3.1e-07 Score=93.49 Aligned_cols=45 Identities=33% Similarity=0.756 Sum_probs=38.5
Q ss_pred cccccccccccccccCCeeEEeCCCCc-ccHHHHHHHHHhcCCCCCccccCcCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDICK 506 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~e 506 (514)
.+...|+||++.+.. .+.+||||. ||..|+..| ..||+||..|..
T Consensus 293 ~~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 345789999999876 478899999 999999988 589999998854
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.99 E-value=4.1e-06 Score=72.76 Aligned_cols=46 Identities=28% Similarity=0.599 Sum_probs=39.4
Q ss_pred ccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCC
Q 010258 459 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 506 (514)
Q Consensus 459 C~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e 506 (514)
|.+|--++.. ..+.+||+|+||.+|+..|.++...+||.|+.+|..
T Consensus 4 C~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 4 CDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred cCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 7888777655 579999999999999999998667899999998753
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.34 E-value=8.9e-05 Score=71.96 Aligned_cols=51 Identities=25% Similarity=0.503 Sum_probs=39.9
Q ss_pred ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhc-CCCCCccccCcCCC
Q 010258 455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI-HRVCPLCRGDICKP 507 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~-~~TCPLCRa~V~e~ 507 (514)
...+|.||.+-+..+ ++.-.|+|.||..|+.+|++.. +..||.|+......
T Consensus 179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 467899999998876 2222399999999999999852 35899999876544
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.53 E-value=0.047 Score=44.93 Aligned_cols=35 Identities=11% Similarity=0.365 Sum_probs=26.7
Q ss_pred cccccccccccccCCeeEEeCCCCcccHHHHHH-HH
Q 010258 456 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDK-WL 490 (514)
Q Consensus 456 ~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdk-WL 490 (514)
+..|.||++.|..+....-+.|+|.||..|+.. |.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 457999998754433344489999999999998 54
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=88.61 E-value=0.2 Score=39.85 Aligned_cols=47 Identities=28% Similarity=0.439 Sum_probs=33.4
Q ss_pred ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhc---CCCCCccccCc
Q 010258 455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI---HRVCPLCRGDI 504 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~---~~TCPLCRa~V 504 (514)
....|.||.+. ++.+.--.|...||..|+...|... .-.||.|....
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 35679999753 3333333399999999999988753 23799997653
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=87.00 E-value=0.29 Score=42.39 Aligned_cols=50 Identities=20% Similarity=0.476 Sum_probs=38.9
Q ss_pred ccccccccccccccCCeeEEeCC-CCcccHHHHHHHHHhcCCCCCccccCcCCCCCC
Q 010258 455 EVAQCYICLLEYEEGDSVRVLPC-HHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL 510 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLPC-gHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~ 510 (514)
.-.-|-.|+-.... .+.| .|.+|..|+...|.. ...||+|+.+++.+-.+
T Consensus 27 G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 27 GPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCCSCT
T ss_pred CcccChhhccccCC-----eeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcceec
Confidence 34569999987553 4445 699999999999985 77899999988766544
No 76
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=86.14 E-value=0.33 Score=55.72 Aligned_cols=55 Identities=13% Similarity=0.159 Sum_probs=47.6
Q ss_pred cccccccccccccccCCeeEEeCCC-CcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCH-HEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 512 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCg-HvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn 512 (514)
.+...|+|-++-+.++ +++|-| +.|-+.+|.+||.. +.+||+=|.++......||
T Consensus 889 P~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN 944 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPN 944 (968)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEEC
T ss_pred cHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCccccccc
Confidence 3456799999999987 889987 68999999999996 8899999999987777776
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.08 E-value=0.12 Score=39.89 Aligned_cols=50 Identities=24% Similarity=0.402 Sum_probs=35.0
Q ss_pred cccccccccccccccCCee-EEeCCCCcccHHHHHHHHHh----cCCCCCccccC
Q 010258 454 EEVAQCYICLLEYEEGDSV-RVLPCHHEFHKTCVDKWLKE----IHRVCPLCRGD 503 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~V-rvLPCgHvFH~eCIdkWLke----~~~TCPLCRa~ 503 (514)
++...|+||...+.++..+ .--.|...||..|+.--... ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4456799999998654433 33449999999998753321 25689999764
No 78
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=83.35 E-value=0.24 Score=39.42 Aligned_cols=53 Identities=21% Similarity=0.414 Sum_probs=35.3
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh---cCCCCCccccCcCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRGDICK 506 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa~V~e 506 (514)
.+...|.||.........+.--.|.-.||..|+..-+.. ..-.||.|+..+..
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 345569999887542223333339999999999865542 24579999876643
No 79
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=79.72 E-value=0.93 Score=42.56 Aligned_cols=48 Identities=21% Similarity=0.437 Sum_probs=33.9
Q ss_pred ccccccccccccCCe---eEE-eCCCCcccHHHHHH------HHHh----cCCCCCccccCc
Q 010258 457 AQCYICLLEYEEGDS---VRV-LPCHHEFHKTCVDK------WLKE----IHRVCPLCRGDI 504 (514)
Q Consensus 457 ~EC~ICLEefe~gd~---Vrv-LPCgHvFH~eCIdk------WLke----~~~TCPLCRa~V 504 (514)
.-|+||...|.+++. ++. --|...||..|+.- -+.. ....||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 359999999988762 333 34999999999853 1210 157999998753
No 80
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=78.81 E-value=0.31 Score=41.84 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=34.6
Q ss_pred ccccccccccccCCeeEEe--CCCCcccHHHHHHHH---H------hcCCCCCccccCcC
Q 010258 457 AQCYICLLEYEEGDSVRVL--PCHHEFHKTCVDKWL---K------EIHRVCPLCRGDIC 505 (514)
Q Consensus 457 ~EC~ICLEefe~gd~VrvL--PCgHvFH~eCIdkWL---k------e~~~TCPLCRa~V~ 505 (514)
..|.||...|.+...++.- .|...||..|+.-=. + .....||.|+....
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 4699999998766555554 499999999986221 1 12568999986543
No 81
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=72.09 E-value=0.58 Score=36.18 Aligned_cols=52 Identities=21% Similarity=0.474 Sum_probs=34.0
Q ss_pred cccccccccccccccCC-ee-EEeCCCCcccHHHHHHHHH------hcCCCCCccccCcC
Q 010258 454 EEVAQCYICLLEYEEGD-SV-RVLPCHHEFHKTCVDKWLK------EIHRVCPLCRGDIC 505 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd-~V-rvLPCgHvFH~eCIdkWLk------e~~~TCPLCRa~V~ 505 (514)
.+...|.||.......+ .+ .--.|.-.||..|+..=|. +..-.||.|.....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 34567999998754322 22 2233999999999986442 12457999976543
No 82
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=71.45 E-value=1.2 Score=33.29 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=30.3
Q ss_pred cccccccccccCCeeEEe--CCCCcccHHHHHHHHH---hcCCCCCccc
Q 010258 458 QCYICLLEYEEGDSVRVL--PCHHEFHKTCVDKWLK---EIHRVCPLCR 501 (514)
Q Consensus 458 EC~ICLEefe~gd~VrvL--PCgHvFH~eCIdkWLk---e~~~TCPLCR 501 (514)
.|.||..++.+++.++.- .|...||..|+.--.. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 478999988665544443 4999999999863221 2467899985
No 83
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.09 E-value=3.6 Score=33.08 Aligned_cols=48 Identities=23% Similarity=0.446 Sum_probs=31.7
Q ss_pred cccccccccccccCCee-EEeCCCCcccHHHHHHHHHh----cCCCCCccccCc
Q 010258 456 VAQCYICLLEYEEGDSV-RVLPCHHEFHKTCVDKWLKE----IHRVCPLCRGDI 504 (514)
Q Consensus 456 ~~EC~ICLEefe~gd~V-rvLPCgHvFH~eCIdkWLke----~~~TCPLCRa~V 504 (514)
..-| ||...+..+..+ .--.|...||..|+.--... ....||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3446 999887644333 33349999999999632221 256899998643
No 84
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=70.69 E-value=2.7 Score=33.24 Aligned_cols=48 Identities=25% Similarity=0.495 Sum_probs=32.1
Q ss_pred cccccccccccccccCCeeEEe--CCCCcccHHHHHHHH------H-h--cCCCCCccc
Q 010258 454 EEVAQCYICLLEYEEGDSVRVL--PCHHEFHKTCVDKWL------K-E--IHRVCPLCR 501 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvL--PCgHvFH~eCIdkWL------k-e--~~~TCPLCR 501 (514)
+....|.+|..+|.+++.++.- .|.-.||..|+---. . + ..-.||.|.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 4456799999998876655444 599999999985322 1 0 134688885
No 85
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=69.57 E-value=1.4 Score=32.54 Aligned_cols=45 Identities=27% Similarity=0.578 Sum_probs=30.0
Q ss_pred cccccccccccCCeeEEeCCCCcccHHHHHHHHHh---cCCCCCcccc
Q 010258 458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRG 502 (514)
Q Consensus 458 EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa 502 (514)
.|.||...-..++.+.--.|...||..|+.+=|.+ ..-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48999876443333333449999999999764443 1336999964
No 86
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=69.02 E-value=2.3 Score=36.28 Aligned_cols=32 Identities=22% Similarity=0.717 Sum_probs=23.7
Q ss_pred cccccccccccccccCCeeEEeC---CCCcccHHHHHHH
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLP---CHHEFHKTCVDKW 489 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLP---CgHvFH~eCIdkW 489 (514)
..+..|.||-. |... ..+| |+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~~-~t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-cccc---ceeccccccccccHhhcccc
Confidence 34678999953 4443 3556 8999999999986
No 87
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=67.95 E-value=1.4 Score=39.70 Aligned_cols=47 Identities=26% Similarity=0.461 Sum_probs=31.5
Q ss_pred ccccccccccccccCCeeEE-eCCCCcccHHHHHHHHH----hcCCCCCcccc
Q 010258 455 EVAQCYICLLEYEEGDSVRV-LPCHHEFHKTCVDKWLK----EIHRVCPLCRG 502 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~Vrv-LPCgHvFH~eCIdkWLk----e~~~TCPLCRa 502 (514)
+..-| ||...+..+..++. -.|...||..|+.--.. ...-.||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 45568 99988764443333 34999999999953222 12568999975
No 88
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=66.96 E-value=1.1 Score=37.98 Aligned_cols=48 Identities=23% Similarity=0.484 Sum_probs=31.7
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh---cCCCCCccc
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCR 501 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCR 501 (514)
..+..|.||.+.-+..+.+.--.|...||..||..++.. ..-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 345679999886443333444459999999999887652 233566653
No 89
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=65.69 E-value=2.1 Score=33.06 Aligned_cols=47 Identities=21% Similarity=0.609 Sum_probs=32.3
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh---cCCCCCccccC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRGD 503 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa~ 503 (514)
.....|.||... ++.+.--.|...||..|+..-|.+ ..-.||.|...
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 445679999873 333333349999999999986543 23479999753
No 90
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=64.15 E-value=1.2 Score=34.56 Aligned_cols=50 Identities=24% Similarity=0.525 Sum_probs=33.2
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh---cCCCCCccccCcCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRGDICK 506 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa~V~e 506 (514)
.....|.||... ++.+.--.|...||..|+..-|.+ ..-.||.|.....+
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~k 59 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK 59 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCT
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchhc
Confidence 345679999863 332333339999999999875553 23369999875543
No 91
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=64.00 E-value=1.2 Score=37.58 Aligned_cols=47 Identities=23% Similarity=0.500 Sum_probs=31.5
Q ss_pred ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhc--CCCCCcccc
Q 010258 455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI--HRVCPLCRG 502 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~--~~TCPLCRa 502 (514)
+...| ||-.....+..|.--.|.-.||..|+..=+... ...||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34557 898776655444444499999999997533321 357999974
No 92
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=60.51 E-value=1.2 Score=41.53 Aligned_cols=47 Identities=28% Similarity=0.469 Sum_probs=31.7
Q ss_pred ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh---cCCCCCccccCc
Q 010258 455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRGDI 504 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa~V 504 (514)
.+..|.||... ++.+..=.|...||..|+.+.|.. ..-.||.|+..-
T Consensus 6 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45679999754 221222228999999999887764 234799998643
No 93
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.88 E-value=2.7 Score=33.41 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=30.8
Q ss_pred ccccccccccccCCeeEEeCCCCcccHHHHHHHHH--------hcCCCCCccccC
Q 010258 457 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK--------EIHRVCPLCRGD 503 (514)
Q Consensus 457 ~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLk--------e~~~TCPLCRa~ 503 (514)
.-| ||...+..+..|.--.|...||..|+.--.. .....||.|+..
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 446 8988876444444445999999999852211 136789999754
No 94
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.84 E-value=0.75 Score=34.87 Aligned_cols=46 Identities=26% Similarity=0.585 Sum_probs=31.2
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh---cCCCCCcccc
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRG 502 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa 502 (514)
..+..|.||... ++.+.--.|...||..|+.+-|.. ..-.||.|..
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 446679999874 333333349999999999875553 1235888854
No 95
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=58.87 E-value=1 Score=37.39 Aligned_cols=51 Identities=18% Similarity=0.408 Sum_probs=33.7
Q ss_pred ccccccccccccccCCeeEEeC--CCCcccHHHHHHHHHh-------cCCCCCccccCcC
Q 010258 455 EVAQCYICLLEYEEGDSVRVLP--CHHEFHKTCVDKWLKE-------IHRVCPLCRGDIC 505 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLP--CgHvFH~eCIdkWLke-------~~~TCPLCRa~V~ 505 (514)
....|.||...-...+...++- |...||..|+.+-|.. ..-.||.|.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4567999998644322223332 9999999999876541 2347999976443
No 96
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=57.52 E-value=2.2 Score=34.42 Aligned_cols=49 Identities=24% Similarity=0.347 Sum_probs=31.9
Q ss_pred ccccccccccccccCCeeEEe--CCCCcccHHHHHHHHHh--------cCCCCCccccCc
Q 010258 455 EVAQCYICLLEYEEGDSVRVL--PCHHEFHKTCVDKWLKE--------IHRVCPLCRGDI 504 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvL--PCgHvFH~eCIdkWLke--------~~~TCPLCRa~V 504 (514)
+...| ||-.....+..|.-= .|...||..|+.---.. .+..||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 34457 888875555444444 59999999998632111 256899997644
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=56.71 E-value=8.8 Score=32.67 Aligned_cols=46 Identities=22% Similarity=0.550 Sum_probs=28.3
Q ss_pred cccccccccccc-----cCCe-eEEeCCCCcccHHHHHH------HHHhcCCCCCccc
Q 010258 456 VAQCYICLLEYE-----EGDS-VRVLPCHHEFHKTCVDK------WLKEIHRVCPLCR 501 (514)
Q Consensus 456 ~~EC~ICLEefe-----~gd~-VrvLPCgHvFH~eCIdk------WLke~~~TCPLCR 501 (514)
...|.||+..-. .++. +.--.|+..||..||.. .+.+..-.||-|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 456999987631 1222 33344999999999953 2333344677764
No 98
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=56.65 E-value=2.5 Score=35.12 Aligned_cols=56 Identities=21% Similarity=0.414 Sum_probs=34.7
Q ss_pred cccccccccccccccC-CeeEEe-CCCCcccHHHHHHHHH-hcCCCCCccccCcCCCCC
Q 010258 454 EEVAQCYICLLEYEEG-DSVRVL-PCHHEFHKTCVDKWLK-EIHRVCPLCRGDICKPDS 509 (514)
Q Consensus 454 ee~~EC~ICLEefe~g-d~VrvL-PCgHvFH~eCIdkWLk-e~~~TCPLCRa~V~e~~s 509 (514)
+++..|.||...-... +.+..- .|.-.||..|+..-+. ...-.||.|......+..
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~~ 81 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPAL 81 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC-
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhhh
Confidence 3457899998764222 222222 2899999999985332 224479999876554443
No 99
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=56.49 E-value=14 Score=31.68 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=38.8
Q ss_pred cccccccccccccCC---e-eEEeCCCCcccHHHHHHHHHhcCCCCCccccCcC
Q 010258 456 VAQCYICLLEYEEGD---S-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 505 (514)
Q Consensus 456 ~~EC~ICLEefe~gd---~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~ 505 (514)
...|.||-+++.... . |..-.|+--.|+.|.+-=.++.+..||.|+...-
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 457999999865432 2 2333488889999999988888899999998774
No 100
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=53.41 E-value=6 Score=33.43 Aligned_cols=46 Identities=28% Similarity=0.588 Sum_probs=29.3
Q ss_pred ccccccccccccccCCeeEEeC--CC-CcccHHHHHHHHHh---cCCCCCccccCc
Q 010258 455 EVAQCYICLLEYEEGDSVRVLP--CH-HEFHKTCVDKWLKE---IHRVCPLCRGDI 504 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLP--Cg-HvFH~eCIdkWLke---~~~TCPLCRa~V 504 (514)
+..-| ||..... ++.|.-=. |. ..||..||. |.. .+-.||.|+..-
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34456 9988653 43333333 55 689999998 443 245799997644
No 101
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=52.36 E-value=5.3 Score=32.00 Aligned_cols=47 Identities=28% Similarity=0.561 Sum_probs=29.3
Q ss_pred ccccccccccccccCCeeEEeC--CC-CcccHHHHHHHHHh---cCCCCCccccCcC
Q 010258 455 EVAQCYICLLEYEEGDSVRVLP--CH-HEFHKTCVDKWLKE---IHRVCPLCRGDIC 505 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLP--Cg-HvFH~eCIdkWLke---~~~TCPLCRa~V~ 505 (514)
+..-| ||..... ++.|.-=. |. ..||..||. |.. .+-.||.|+..-.
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 34457 8988643 43222222 55 689999998 443 2457999976543
No 102
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=50.66 E-value=2.4 Score=33.17 Aligned_cols=50 Identities=22% Similarity=0.483 Sum_probs=33.3
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh---cCCCCCccccCcCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRGDICK 506 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa~V~e 506 (514)
..+..|.||... ++.+.--.|...||..|+.+-|.. ..-.||.|...-..
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 58 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQ 58 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCC
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcccc
Confidence 345679999864 333333349999999999865543 23369999765433
No 103
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.49 E-value=1.3 Score=37.15 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=32.8
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh---cCCCCCccccC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRGD 503 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa~ 503 (514)
.+...|.||...-.....+.--.|...||..|+.+=|.. ..-.||.|...
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 445679999887543322333339999999999854442 13369999764
No 104
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=50.45 E-value=3.6 Score=35.13 Aligned_cols=47 Identities=26% Similarity=0.598 Sum_probs=30.6
Q ss_pred cccccccccccccCCeeEE-eCCCCcccHHHHHHHHHhc---CCCCCcccc
Q 010258 456 VAQCYICLLEYEEGDSVRV-LPCHHEFHKTCVDKWLKEI---HRVCPLCRG 502 (514)
Q Consensus 456 ~~EC~ICLEefe~gd~Vrv-LPCgHvFH~eCIdkWLke~---~~TCPLCRa 502 (514)
-..|.||...-.+++.+.. -.|...||..|+.+-|.+. .-.||.|+.
T Consensus 61 C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3468888875323223322 3399999999998766532 337999975
No 105
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=48.70 E-value=6.1 Score=33.30 Aligned_cols=47 Identities=28% Similarity=0.529 Sum_probs=32.1
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh---cCCCCCccccC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRGD 503 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa~ 503 (514)
.....|.||... ++.+.--.|.-.||..|+.+=|.+ ..-.||.|...
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 445679999864 332333338899999999876653 23369999754
No 106
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=45.96 E-value=12 Score=38.94 Aligned_cols=49 Identities=22% Similarity=0.367 Sum_probs=32.8
Q ss_pred ccccccccccccCCeeEEeCCCCc--ccHHHHHHHHHh-cCCCCCccccCcCCC
Q 010258 457 AQCYICLLEYEEGDSVRVLPCHHE--FHKTCVDKWLKE-IHRVCPLCRGDICKP 507 (514)
Q Consensus 457 ~EC~ICLEefe~gd~VrvLPCgHv--FH~eCIdkWLke-~~~TCPLCRa~V~e~ 507 (514)
..|+|=+..+..+ ++-..|.|. |...-+.....+ ..-.||+|...+...
T Consensus 250 L~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp SBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred ecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHH
Confidence 4699888876664 888889998 555444333332 244799998876543
No 107
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=45.65 E-value=1.1 Score=34.23 Aligned_cols=48 Identities=25% Similarity=0.580 Sum_probs=32.3
Q ss_pred ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh---cCCCCCccccCcC
Q 010258 455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRGDIC 505 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa~V~ 505 (514)
.+..|.||... ++.+.--.|...||..|+.+=|.. ..-.||.|.....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 35679999874 333333349999999999965543 2336999976543
No 108
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.57 E-value=3.1 Score=33.89 Aligned_cols=45 Identities=22% Similarity=0.535 Sum_probs=29.0
Q ss_pred cccccccccccCCeeEEeCCCCcccHHHHHHHHHhc----CCCCCcccc
Q 010258 458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI----HRVCPLCRG 502 (514)
Q Consensus 458 EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~----~~TCPLCRa 502 (514)
.|.||...-..++.+.--.|...||..|+.+=|... .=.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 678887643333223323399999999998655431 236999975
No 109
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=44.29 E-value=18 Score=32.81 Aligned_cols=45 Identities=27% Similarity=0.525 Sum_probs=30.7
Q ss_pred ccccccccccccccCCeeEEeCCCCcccHHHHHHHHH----------hcCCCCCcccc
Q 010258 455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK----------EIHRVCPLCRG 502 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLk----------e~~~TCPLCRa 502 (514)
.+..|.||.+. ++-+.-=.|-..||..||.+-|. ...-.||+|..
T Consensus 62 ~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 45679999874 22222234999999999997652 12346999974
No 110
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=43.20 E-value=5 Score=40.33 Aligned_cols=51 Identities=18% Similarity=0.408 Sum_probs=0.0
Q ss_pred ccccccccccccccCCe-eEEeCCCCcccHHHHHHHHH------hcCCCCCccccCcC
Q 010258 455 EVAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLK------EIHRVCPLCRGDIC 505 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~-VrvLPCgHvFH~eCIdkWLk------e~~~TCPLCRa~V~ 505 (514)
+...|.+|...|..-.. ...-.||++||..|...++. .....|-.|-..+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 35579999998874321 12233999999999987652 12457888866543
No 111
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=42.72 E-value=14 Score=38.28 Aligned_cols=49 Identities=16% Similarity=0.361 Sum_probs=33.5
Q ss_pred ccccccccccccCCeeEEeCCCCc--ccHHHHHHHHHh-cCCCCCccccCcCCC
Q 010258 457 AQCYICLLEYEEGDSVRVLPCHHE--FHKTCVDKWLKE-IHRVCPLCRGDICKP 507 (514)
Q Consensus 457 ~EC~ICLEefe~gd~VrvLPCgHv--FH~eCIdkWLke-~~~TCPLCRa~V~e~ 507 (514)
..|+|=+..+..+ ++-..|.|. |...-+..+..+ ..-.||+|...+...
T Consensus 216 L~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp SBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH
Confidence 4599888777664 788889998 555544443332 234799999877543
No 112
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=41.61 E-value=6.9 Score=33.51 Aligned_cols=44 Identities=30% Similarity=0.523 Sum_probs=27.5
Q ss_pred ccccccccccc----C---CeeEEeCCCCcccHHHHHHHH------HhcCCCCCccc
Q 010258 458 QCYICLLEYEE----G---DSVRVLPCHHEFHKTCVDKWL------KEIHRVCPLCR 501 (514)
Q Consensus 458 EC~ICLEefe~----g---d~VrvLPCgHvFH~eCIdkWL------ke~~~TCPLCR 501 (514)
.|.||+..-.. + +.+.--.|+..||..||..++ .+..-.||.|+
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 59999876421 1 223334499999999998652 23344676663
No 113
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=41.51 E-value=3.1 Score=33.97 Aligned_cols=46 Identities=28% Similarity=0.628 Sum_probs=27.1
Q ss_pred cccccccccccCCeeEEeCCCCcccHHHHHHHHHhc---C-CCCCccccC
Q 010258 458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI---H-RVCPLCRGD 503 (514)
Q Consensus 458 EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~---~-~TCPLCRa~ 503 (514)
.|.||...-..+..+.--.|...||..|+.+-|... . =.||.|+.+
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 466665543222112222389999999999766631 2 479999753
No 114
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=41.48 E-value=12 Score=33.55 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=23.6
Q ss_pred cccccccccccccc-cCC-eeEEeCCCCcccHHHHH
Q 010258 454 EEVAQCYICLLEYE-EGD-SVRVLPCHHEFHKTCVD 487 (514)
Q Consensus 454 ee~~EC~ICLEefe-~gd-~VrvLPCgHvFH~eCId 487 (514)
.....|.+|..+|. ... ...-.-|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 34567999999994 322 23344499999998854
No 115
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=40.97 E-value=5.7 Score=42.27 Aligned_cols=44 Identities=23% Similarity=0.407 Sum_probs=28.9
Q ss_pred ccccccccccCCee-EEeCCCCcccHHHHHHHHHh----cCCCCCcccc
Q 010258 459 CYICLLEYEEGDSV-RVLPCHHEFHKTCVDKWLKE----IHRVCPLCRG 502 (514)
Q Consensus 459 C~ICLEefe~gd~V-rvLPCgHvFH~eCIdkWLke----~~~TCPLCRa 502 (514)
..||...+..+..+ ..-.|.-.||..|+.---.. ....||.|+.
T Consensus 39 yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 39 YCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp ETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred EEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 34998887544433 33349999999999532221 2468999974
No 116
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=40.93 E-value=4.1 Score=39.69 Aligned_cols=46 Identities=28% Similarity=0.628 Sum_probs=26.0
Q ss_pred cccccccccccCCeeEEeCCCCcccHHHHHHHHHhc----CCCCCccccC
Q 010258 458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI----HRVCPLCRGD 503 (514)
Q Consensus 458 EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~----~~TCPLCRa~ 503 (514)
.|.||...-..+..+..=.|...||..|+.+=|... .=.||.|..+
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 588887643222223223399999999999655531 2369999753
No 117
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=38.94 E-value=4.7 Score=31.17 Aligned_cols=44 Identities=32% Similarity=0.622 Sum_probs=27.5
Q ss_pred ccccccccccccccCCeeEEeC--CC-CcccHHHHHHHHHh---cCCCCCcccc
Q 010258 455 EVAQCYICLLEYEEGDSVRVLP--CH-HEFHKTCVDKWLKE---IHRVCPLCRG 502 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLP--Cg-HvFH~eCIdkWLke---~~~TCPLCRa 502 (514)
+..-| ||..... ++.+.-=. |. ..||..||. |.. .+-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34456 9988643 43232233 65 699999998 443 2447999965
No 118
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=38.21 E-value=17 Score=31.41 Aligned_cols=49 Identities=22% Similarity=0.548 Sum_probs=32.2
Q ss_pred cccccccccccccccCCeeEEe---CCCCcccHHHHHHHHHh---cCCCCCccccCcCCCC
Q 010258 454 EEVAQCYICLLEYEEGDSVRVL---PCHHEFHKTCVDKWLKE---IHRVCPLCRGDICKPD 508 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvL---PCgHvFH~eCIdkWLke---~~~TCPLCRa~V~e~~ 508 (514)
..+..|.||.+ .+ .++.- .|-..||..|+. |.. ..-.||.|.-.+..+.
T Consensus 13 ~~~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k~ 67 (107)
T 4gne_A 13 MHEDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSSA 67 (107)
T ss_dssp SSCSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCSB
T ss_pred CCCCCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCCC
Confidence 44567999984 23 33333 388999999998 553 1235998876666554
No 119
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=38.04 E-value=31 Score=29.30 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=29.3
Q ss_pred ccccccccccccccCCeeEEeC--CCCcccHHHHHHHHHh
Q 010258 455 EVAQCYICLLEYEEGDSVRVLP--CHHEFHKTCVDKWLKE 492 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLP--CgHvFH~eCIdkWLke 492 (514)
....|.+|.+.+++- .-++.| =.|.||..|-...++.
T Consensus 14 a~l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHh
Confidence 356799999998875 344555 5899999999999985
No 120
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=37.83 E-value=5.2 Score=31.86 Aligned_cols=46 Identities=28% Similarity=0.628 Sum_probs=27.6
Q ss_pred cccccccccccCCeeEEeCCCCcccHHHHHHHHHhc----CCCCCccccC
Q 010258 458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI----HRVCPLCRGD 503 (514)
Q Consensus 458 EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~----~~TCPLCRa~ 503 (514)
.|.||...-..++.+.--.|...||..|+.+=|.+. .=.||.|+.+
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 456776542222222222299999999998655532 3369999753
No 121
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=37.35 E-value=4.9 Score=31.03 Aligned_cols=43 Identities=28% Similarity=0.594 Sum_probs=26.3
Q ss_pred cccccccccccccCCeeEEeC--CC-CcccHHHHHHHHHh---cCCCCCcccc
Q 010258 456 VAQCYICLLEYEEGDSVRVLP--CH-HEFHKTCVDKWLKE---IHRVCPLCRG 502 (514)
Q Consensus 456 ~~EC~ICLEefe~gd~VrvLP--Cg-HvFH~eCIdkWLke---~~~TCPLCRa 502 (514)
..-| ||..... ++.+.-=. |. ..||..||. |.. ..-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4446 9988643 32222222 54 689999998 543 2447999964
No 122
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=35.05 E-value=21 Score=29.46 Aligned_cols=49 Identities=22% Similarity=0.527 Sum_probs=31.7
Q ss_pred ccccccccccccccCCe-eEEeCCCCcccHHHHHHHHH-----hcCCCCCccccC
Q 010258 455 EVAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLK-----EIHRVCPLCRGD 503 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~-VrvLPCgHvFH~eCIdkWLk-----e~~~TCPLCRa~ 503 (514)
+...|.+|...|..-.. .---.||++||..|...++. +....|-.|-..
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~ 73 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYET 73 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHH
Confidence 45679999999875432 22233999999999876542 123456666543
No 123
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.70 E-value=16 Score=28.05 Aligned_cols=39 Identities=21% Similarity=0.451 Sum_probs=25.8
Q ss_pred ccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCC
Q 010258 457 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 506 (514)
Q Consensus 457 ~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e 506 (514)
..|+.|-+.+..++.+. .-+..||.+| ..|-.|...|..
T Consensus 10 ~~C~~C~~~I~~~~~v~--a~~~~~H~~C---------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVS--SLGKDWHKFC---------LKCERCSKTLTP 48 (76)
T ss_dssp CBCTTTCCBCCTTTEEE--ETTEEEETTT---------CBCSSSCCBCCT
T ss_pred CCCcCCCCEeECCeEEE--ECCeEeeCCC---------CCCCCCCCccCC
Confidence 45888888877655443 3467788765 567777766653
No 124
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=34.56 E-value=27 Score=31.23 Aligned_cols=45 Identities=29% Similarity=0.577 Sum_probs=29.4
Q ss_pred ccccccccccccccCCeeEEeCCCCcccHHHHHHH-----HHhc-----CCCCCcccc
Q 010258 455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKW-----LKEI-----HRVCPLCRG 502 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkW-----Lke~-----~~TCPLCRa 502 (514)
.+..|.||-+. ++-+--=.|-..||..||.+- |+++ .=.|++|..
T Consensus 56 ~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 35569999865 211111238999999999975 3222 247999964
No 125
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=34.53 E-value=12 Score=29.35 Aligned_cols=43 Identities=26% Similarity=0.607 Sum_probs=28.3
Q ss_pred ccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCcc
Q 010258 457 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLC 500 (514)
Q Consensus 457 ~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLC 500 (514)
..|.-|...+.......--.|++.||.+| +..+-+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 35999999986432122233999999999 44444333479988
No 126
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=34.11 E-value=21 Score=31.20 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=24.4
Q ss_pred ccccccccccccccCCee-EEeCCCCcccHHHHHHH
Q 010258 455 EVAQCYICLLEYEEGDSV-RVLPCHHEFHKTCVDKW 489 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~V-rvLPCgHvFH~eCIdkW 489 (514)
+...|.+|...|.....- ---.||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 355799999998754221 12239999999996643
No 127
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=33.40 E-value=18 Score=27.75 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=25.5
Q ss_pred ccccccccccccccCCeeEEeCCCCcccH-HHHHHHHHhcCCCCCcccc
Q 010258 455 EVAQCYICLLEYEEGDSVRVLPCHHEFHK-TCVDKWLKEIHRVCPLCRG 502 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~-eCIdkWLke~~~TCPLCRa 502 (514)
+-..|..|...+..+.-. ..=+..||. .|..+-+ ...|-.|..
T Consensus 26 ~CF~C~~C~~~L~~~~~~--~~~g~~yC~~~cy~~~f---~~~C~~C~~ 69 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHA--EHEGKPYCNHPCYSAMF---GPKGFGRGG 69 (76)
T ss_dssp TTCBCTTTCCBCCTTTEE--EETTEEEETTTHHHHHS---SCCCSSCCC
T ss_pred CCCCccccCccCCCCceE--CcCCeEeeCHHHHHHHh---CccCCCcCC
Confidence 456788888777654221 224566777 5765533 346777754
No 128
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=33.13 E-value=29 Score=27.71 Aligned_cols=50 Identities=22% Similarity=0.428 Sum_probs=31.7
Q ss_pred ccccccccccccc-ccCCeeEEe-CCCCcccHHHHHHHHH-hcCCCCCccccC
Q 010258 454 EEVAQCYICLLEY-EEGDSVRVL-PCHHEFHKTCVDKWLK-EIHRVCPLCRGD 503 (514)
Q Consensus 454 ee~~EC~ICLEef-e~gd~VrvL-PCgHvFH~eCIdkWLk-e~~~TCPLCRa~ 503 (514)
.+...|.||...- .+.+.+..- .|.-.||..|+..-+. +..-.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4466799998764 222233322 3999999999975321 223469998654
No 129
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=32.64 E-value=22 Score=28.70 Aligned_cols=52 Identities=27% Similarity=0.512 Sum_probs=32.1
Q ss_pred cccccccccccccccCCeeE-EeCCCCcccHHHHHHHHH-----hcCCCCCccccCcC
Q 010258 454 EEVAQCYICLLEYEEGDSVR-VLPCHHEFHKTCVDKWLK-----EIHRVCPLCRGDIC 505 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~Vr-vLPCgHvFH~eCIdkWLk-----e~~~TCPLCRa~V~ 505 (514)
.+...|.+|...|.....-- --.||.+||..|....+. +....|-.|-..+.
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 34567999999998642211 223999999999765431 11235666655443
No 130
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=32.20 E-value=12 Score=29.71 Aligned_cols=46 Identities=26% Similarity=0.458 Sum_probs=30.1
Q ss_pred cccccccccccCCeeE-EeCCCCcccHHHHHHHHHh----cCCCCCccccC
Q 010258 458 QCYICLLEYEEGDSVR-VLPCHHEFHKTCVDKWLKE----IHRVCPLCRGD 503 (514)
Q Consensus 458 EC~ICLEefe~gd~Vr-vLPCgHvFH~eCIdkWLke----~~~TCPLCRa~ 503 (514)
...||...+..+..++ --.|.-.||..|+.--... ....||.|+..
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 3458988775443333 3349999999999643221 24679999764
No 131
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=31.72 E-value=6.8 Score=32.98 Aligned_cols=47 Identities=23% Similarity=0.441 Sum_probs=30.0
Q ss_pred cccccccccccCCeeEEeCCCCcccHHHHHHHHHh---cCCCCCccccCc
Q 010258 458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRGDI 504 (514)
Q Consensus 458 EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa~V 504 (514)
.|.||...-.+...+.--.|...||..|+.+=|.. ..-.||.|..-.
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 57777765433222333349999999999865543 234699996644
No 132
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=30.91 E-value=25 Score=29.09 Aligned_cols=51 Identities=18% Similarity=0.408 Sum_probs=32.3
Q ss_pred cccccccccccccccCCee-EEeCCCCcccHHHHHHHHH------hcCCCCCccccCc
Q 010258 454 EEVAQCYICLLEYEEGDSV-RVLPCHHEFHKTCVDKWLK------EIHRVCPLCRGDI 504 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~V-rvLPCgHvFH~eCIdkWLk------e~~~TCPLCRa~V 504 (514)
.+...|.+|...|..-..- ---.||++||..|....+. +....|-.|-..+
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 4456799999998764221 1223999999999765321 1234677775543
No 133
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=30.84 E-value=26 Score=28.43 Aligned_cols=53 Identities=19% Similarity=0.316 Sum_probs=33.6
Q ss_pred cccccccccccccccCCeeE-EeCCCCcccHHHHHHHHH-------hcCCCCCccccCcCC
Q 010258 454 EEVAQCYICLLEYEEGDSVR-VLPCHHEFHKTCVDKWLK-------EIHRVCPLCRGDICK 506 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~Vr-vLPCgHvFH~eCIdkWLk-------e~~~TCPLCRa~V~e 506 (514)
.+...|.+|...|..-..-- --.||++||..|....+. +....|-.|-..+..
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~ 79 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRS 79 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHT
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhh
Confidence 34567999999997643211 223999999999765421 123467777554433
No 134
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=30.44 E-value=15 Score=28.84 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=31.5
Q ss_pred ccccccccccccccCCe-eEEeCCCCcccHHHHHHHHH---hcCCCCCccccC
Q 010258 455 EVAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLK---EIHRVCPLCRGD 503 (514)
Q Consensus 455 e~~EC~ICLEefe~gd~-VrvLPCgHvFH~eCIdkWLk---e~~~TCPLCRa~ 503 (514)
....| ||...+..++. |.--.|...||..|+.--.. .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 34558 79887766543 33344999999999874321 125679999753
No 135
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=28.18 E-value=14 Score=39.10 Aligned_cols=47 Identities=23% Similarity=0.361 Sum_probs=30.9
Q ss_pred ccccccccccccCCeeEE-eCCCCcccHHHHHHHHHh----cCCCCCccccC
Q 010258 457 AQCYICLLEYEEGDSVRV-LPCHHEFHKTCVDKWLKE----IHRVCPLCRGD 503 (514)
Q Consensus 457 ~EC~ICLEefe~gd~Vrv-LPCgHvFH~eCIdkWLke----~~~TCPLCRa~ 503 (514)
..+.||...+..+..++. -.|.-.||..|+.---.. ....||.|+..
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVL 56 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHH
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccc
Confidence 346699888754443433 349999999999522111 24689999763
No 136
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=27.99 E-value=23 Score=33.19 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=23.9
Q ss_pred cccccccccccccCCeeEE-eCCCCcccHHHHHHH
Q 010258 456 VAQCYICLLEYEEGDSVRV-LPCHHEFHKTCVDKW 489 (514)
Q Consensus 456 ~~EC~ICLEefe~gd~Vrv-LPCgHvFH~eCIdkW 489 (514)
+..|.+|...|..-..--. -.||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 4689999999875422112 239999999997653
No 137
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.93 E-value=27 Score=28.25 Aligned_cols=35 Identities=14% Similarity=0.349 Sum_probs=24.2
Q ss_pred cccccccccccccccCCee-EEeCCCCcccHHHHHH
Q 010258 454 EEVAQCYICLLEYEEGDSV-RVLPCHHEFHKTCVDK 488 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~V-rvLPCgHvFH~eCIdk 488 (514)
.+...|.+|...|..-..- ---.||.+||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3456799999998754211 1223999999999654
No 138
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=27.64 E-value=9.3 Score=29.80 Aligned_cols=43 Identities=33% Similarity=0.656 Sum_probs=26.6
Q ss_pred cccccccccccccCCeeEEeC--CC-CcccHHHHHHHHHh---cCCCCCcccc
Q 010258 456 VAQCYICLLEYEEGDSVRVLP--CH-HEFHKTCVDKWLKE---IHRVCPLCRG 502 (514)
Q Consensus 456 ~~EC~ICLEefe~gd~VrvLP--Cg-HvFH~eCIdkWLke---~~~TCPLCRa 502 (514)
..-| ||..... ++.+.-=. |. ..||..||. |.. .+-.||.|+.
T Consensus 11 ~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 4446 9988632 43222223 54 899999998 332 2457999965
No 139
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.17 E-value=25 Score=33.38 Aligned_cols=49 Identities=20% Similarity=0.495 Sum_probs=31.3
Q ss_pred cccccccccccccCCeeE-EeCCCCcccHHHHHHHHH-------hcCCCCCccccCc
Q 010258 456 VAQCYICLLEYEEGDSVR-VLPCHHEFHKTCVDKWLK-------EIHRVCPLCRGDI 504 (514)
Q Consensus 456 ~~EC~ICLEefe~gd~Vr-vLPCgHvFH~eCIdkWLk-------e~~~TCPLCRa~V 504 (514)
+..|.+|...|..-..-- .-.||++||..|-..++. .....|-.|-..+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l 220 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 220 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHH
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHh
Confidence 457999999988642212 223999999999775432 1134677775544
No 140
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=26.78 E-value=7.5 Score=34.33 Aligned_cols=46 Identities=24% Similarity=0.544 Sum_probs=29.8
Q ss_pred cccccccccccccCCe-eEEeCCCCcccHHHHHHHHHhcCCCCCcccc
Q 010258 456 VAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRG 502 (514)
Q Consensus 456 ~~EC~ICLEefe~gd~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa 502 (514)
...|.+|-..|..-.. ----.||.+||..|....+.. ...|-.|-.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-vRVC~~C~~ 65 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-PRLCLLCQR 65 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-ceECHHHHH
Confidence 4579999999875322 222349999999998776652 567877754
No 141
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.72 E-value=28 Score=27.37 Aligned_cols=39 Identities=23% Similarity=0.509 Sum_probs=26.4
Q ss_pred cccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcC
Q 010258 456 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 505 (514)
Q Consensus 456 ~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~ 505 (514)
...|+.|-..+..++.+.. -+..||.+| ..|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a--~~~~wH~~C---------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA--LDKQWHVSC---------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE--TTEEECTTT---------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE--CCccccccc---------CCcCcCCCCcC
Confidence 3468888888776655444 367788765 56777776664
No 142
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=26.58 E-value=7.6 Score=28.87 Aligned_cols=42 Identities=21% Similarity=0.489 Sum_probs=26.7
Q ss_pred ccccccccCCeeEEeCCCCcccHHHHHHHHHh--cCCCCCcccc
Q 010258 461 ICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE--IHRVCPLCRG 502 (514)
Q Consensus 461 ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke--~~~TCPLCRa 502 (514)
||...+..+..+.--.|...||..|+.--... ....||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 67776553233333449999999998642221 2567999864
No 143
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=26.03 E-value=27 Score=31.81 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=23.8
Q ss_pred ccccccccccccccCC--eeEEeCCCCcccHHHH
Q 010258 455 EVAQCYICLLEYEEGD--SVRVLPCHHEFHKTCV 486 (514)
Q Consensus 455 e~~EC~ICLEefe~gd--~VrvLPCgHvFH~eCI 486 (514)
....|.+|..+|..-. .....-|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 4568999999875432 3444459999999997
No 144
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=25.24 E-value=38 Score=26.74 Aligned_cols=32 Identities=16% Similarity=0.349 Sum_probs=22.6
Q ss_pred ccccccccccccCCeeE-EeCCCCcccHHHHHH
Q 010258 457 AQCYICLLEYEEGDSVR-VLPCHHEFHKTCVDK 488 (514)
Q Consensus 457 ~EC~ICLEefe~gd~Vr-vLPCgHvFH~eCIdk 488 (514)
..|.+|...|..-..-- --.||++||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 46999999987642111 123999999999754
No 145
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=24.74 E-value=23 Score=27.95 Aligned_cols=48 Identities=21% Similarity=0.527 Sum_probs=30.8
Q ss_pred cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh--cCCCCCcccc
Q 010258 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE--IHRVCPLCRG 502 (514)
Q Consensus 454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke--~~~TCPLCRa 502 (514)
.+..-| ||...+.....|.--.|...||..|+.--... ....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 344557 99887653223444449999999998742211 2457999964
No 146
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=23.32 E-value=4.1 Score=34.91 Aligned_cols=49 Identities=18% Similarity=0.407 Sum_probs=31.5
Q ss_pred ccccccccccccCCeeEEeCCCCcccHHHHHHHHHh---cCCCCCccccCcC
Q 010258 457 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRGDIC 505 (514)
Q Consensus 457 ~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa~V~ 505 (514)
..|.||...-..++.+.--.|...||..|+.+=|.. ..-.||.|...+.
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 358888775434433333349999999999864443 1335999876543
No 147
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=22.72 E-value=32 Score=30.02 Aligned_cols=12 Identities=50% Similarity=1.262 Sum_probs=11.1
Q ss_pred ccHHHHHHHHHh
Q 010258 481 FHKTCVDKWLKE 492 (514)
Q Consensus 481 FH~eCIdkWLke 492 (514)
||..|+.+|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999984
No 148
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=22.61 E-value=32 Score=30.04 Aligned_cols=12 Identities=33% Similarity=1.221 Sum_probs=11.1
Q ss_pred ccHHHHHHHHHh
Q 010258 481 FHKTCVDKWLKE 492 (514)
Q Consensus 481 FH~eCIdkWLke 492 (514)
||..|+.+|++.
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999984
No 149
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.09 E-value=74 Score=24.43 Aligned_cols=41 Identities=24% Similarity=0.418 Sum_probs=26.9
Q ss_pred ccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCC
Q 010258 457 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKP 507 (514)
Q Consensus 457 ~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ 507 (514)
..|+.|-..+..++.++ ..-+..||.+| ..|-.|...|...
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~C---------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNV-EYKGTVWHKDC---------FTCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEE-ECSSCEEETTT---------CCCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEE-EECcccccccc---------CchhhCCCccCCC
Confidence 46888888887655432 23477888765 5677777766543
No 150
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.73 E-value=38 Score=26.65 Aligned_cols=39 Identities=21% Similarity=0.416 Sum_probs=25.2
Q ss_pred cccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcC
Q 010258 456 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 505 (514)
Q Consensus 456 ~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~ 505 (514)
...|+.|-..+...+.+. .-+..||..| ..|-.|...|.
T Consensus 15 ~~~C~~C~~~I~~~e~v~--a~~~~wH~~C---------F~C~~C~~~L~ 53 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC--VNGHFFHRSC---------FRCHTCEATLW 53 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC--BTTBCCBTTT---------CBCSSSCCBCC
T ss_pred CCCCcccCCCcccceEEE--ECCCeeCCCc---------CEEcCCCCCcC
Confidence 346999998887655443 3477888877 34555555443
No 151
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.58 E-value=1e+02 Score=24.37 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=12.1
Q ss_pred cccccccccccCCeeEEeCCCCcccHHH
Q 010258 458 QCYICLLEYEEGDSVRVLPCHHEFHKTC 485 (514)
Q Consensus 458 EC~ICLEefe~gd~VrvLPCgHvFH~eC 485 (514)
.|+.|-..+...+.+ ..-+..||..|
T Consensus 17 ~C~~C~~~I~~~~~v--~a~~~~~H~~C 42 (91)
T 2d8y_A 17 TCVECQKTVYPMERL--LANQQVFHISC 42 (91)
T ss_dssp BCTTTCCBCCTTSEE--ECSSSEEETTT
T ss_pred cCccCCCccCCceeE--EECCCEECCCC
Confidence 455555555443322 23444555544
No 152
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.21 E-value=52 Score=26.07 Aligned_cols=40 Identities=15% Similarity=0.329 Sum_probs=27.1
Q ss_pred cccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCC
Q 010258 456 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKP 507 (514)
Q Consensus 456 ~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~ 507 (514)
...|+.|-..+. ++.+ ..-+..||.+| ..|-.|+..|...
T Consensus 25 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~C---------F~C~~C~~~L~~~ 64 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFL--VALGKSWHPEE---------FNCAHCKNTMAYI 64 (90)
T ss_dssp CCBBSSSCCBCC-SCEE--EETTEEECTTT---------CBCSSSCCBCSSS
T ss_pred CCCCccCCCEec-ceEE--EECCccccccC---------CccCCCCCCCCCC
Confidence 456999988885 3323 34578888866 5788887776543
No 153
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.77 E-value=53 Score=24.63 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=16.8
Q ss_pred cccccccccccccCCeeEEeCCCCcccHHHHHHHHH
Q 010258 456 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK 491 (514)
Q Consensus 456 ~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLk 491 (514)
-..|..|...+.. .. -...=+..||..|..+.+.
T Consensus 33 CF~C~~C~~~L~~-~~-~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 33 CFVCSTCRAQLRG-QH-FYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TCBCSSSCCBCTT-SC-EEESSSCEEEHHHHHHHHH
T ss_pred CCcccccCCcCCc-Cc-CEeeCCeEECHHHHHHHHc
Confidence 4556666655532 11 1222455666666655554
No 154
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.02 E-value=71 Score=23.85 Aligned_cols=38 Identities=24% Similarity=0.468 Sum_probs=20.0
Q ss_pred cccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcC
Q 010258 458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 505 (514)
Q Consensus 458 EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~ 505 (514)
.|+.|-..+...+.++.. -+..||.+| ..|-.|...+.
T Consensus 7 ~C~~C~~~I~~~~~~~~a-~~~~~H~~C---------F~C~~C~~~L~ 44 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKMEY-KGSSWHETC---------FICHRCQQPIG 44 (72)
T ss_dssp CBSSSCCCCCSSSCEEEE-TTEEEETTT---------TCCSSSCCCCC
T ss_pred CCccCCCcccCCceEEEE-CcCeecccC---------CcccccCCccC
Confidence 467776666654322221 355666654 45556655543
Done!