Query 010264
Match_columns 514
No_of_seqs 164 out of 202
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 22:29:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4629 Predicted mechanosensi 100.0 2.1E-70 4.6E-75 600.6 28.2 465 17-513 1-624 (714)
2 PF00924 MS_channel: Mechanose 99.3 3.9E-12 8.6E-17 120.0 5.9 82 432-513 59-141 (206)
3 PRK11465 putative mechanosensi 98.7 1.4E-06 3.1E-11 98.7 22.9 74 432-508 572-645 (741)
4 PRK11281 hypothetical protein; 98.7 4E-07 8.7E-12 107.0 18.7 77 432-508 937-1014(1113)
5 PRK10929 putative mechanosensi 98.7 1.1E-06 2.4E-11 103.2 20.7 77 432-508 934-1011(1109)
6 PRK10334 mechanosensitive chan 98.6 9.5E-08 2.1E-12 97.3 8.4 80 432-511 128-207 (286)
7 COG0668 MscS Small-conductance 98.5 3.2E-07 6.8E-12 91.2 8.5 81 432-512 146-227 (316)
8 COG3264 Small-conductance mech 97.6 0.0014 3E-08 75.3 15.4 76 433-508 660-736 (835)
9 PRK11281 hypothetical protein; 88.6 1.5 3.3E-05 53.0 8.7 96 186-284 788-898 (1113)
10 KOG1923 Rac1 GTPase effector F 59.6 72 0.0016 37.7 10.7 19 158-176 387-405 (830)
11 PF11368 DUF3169: Protein of u 49.6 2E+02 0.0044 28.8 11.1 11 307-317 224-234 (248)
12 COG2177 FtsX Cell division pro 48.2 62 0.0013 33.9 7.4 17 321-337 280-296 (297)
13 PRK10263 DNA translocase FtsK; 47.8 4.6E+02 0.01 33.3 15.4 19 327-345 178-196 (1355)
14 COG3256 NorB Nitric oxide redu 44.9 2.3E+02 0.005 33.1 11.5 151 180-333 477-666 (717)
15 KOG1053 Glutamate-gated NMDA-t 44.3 79 0.0017 38.2 8.0 39 274-312 611-652 (1258)
16 PF02674 Colicin_V: Colicin V 42.3 2.5E+02 0.0055 25.1 10.6 34 218-251 20-53 (146)
17 PRK10747 putative protoheme IX 39.4 88 0.0019 33.2 7.1 31 216-246 38-68 (398)
18 PF10329 DUF2417: Region of un 36.8 3.9E+02 0.0085 27.4 10.8 31 296-326 176-207 (232)
19 KOG3012 Uncharacterized conser 36.5 2.5E+02 0.0055 29.0 9.3 68 193-265 84-159 (259)
20 KOG1924 RhoA GTPase effector D 35.5 97 0.0021 37.0 6.9 12 196-207 703-714 (1102)
21 PF14965 BRI3BP: Negative regu 34.7 2.3E+02 0.0051 28.0 8.4 29 223-251 77-105 (177)
22 COG4818 Predicted membrane pro 34.6 1.9E+02 0.0041 26.2 7.1 44 237-285 14-58 (105)
23 TIGR00870 trp transient-recept 32.1 6.7E+02 0.015 28.9 13.1 32 300-331 585-616 (743)
24 TIGR00540 hemY_coli hemY prote 31.6 1.4E+02 0.0029 31.8 7.0 33 215-247 37-69 (409)
25 KOG3817 Uncharacterized conser 31.4 4.1E+02 0.0089 29.3 10.3 38 294-331 251-291 (452)
26 COG3071 HemY Uncharacterized e 31.1 2.7E+02 0.0059 30.7 9.1 42 300-341 40-81 (400)
27 PF05552 TM_helix: Conserved T 29.3 60 0.0013 25.1 2.9 24 226-249 22-45 (53)
28 PF12794 MscS_TM: Mechanosensi 28.2 7.4E+02 0.016 26.2 13.5 74 264-341 192-265 (340)
29 PRK11598 putative metal depend 27.8 8.8E+02 0.019 27.6 12.8 9 268-276 121-129 (545)
30 PF07086 DUF1352: Protein of u 27.4 6.2E+02 0.013 25.1 12.4 25 179-203 34-58 (186)
31 KOG0559 Dihydrolipoamide succi 27.1 92 0.002 34.1 4.7 10 29-38 143-152 (457)
32 KOG4812 Golgi-associated prote 27.0 3.2E+02 0.0068 28.5 8.2 28 72-101 76-103 (262)
33 COG4589 Predicted CDP-diglycer 26.2 6.3E+02 0.014 26.7 10.2 93 218-311 41-150 (303)
34 PF14752 RBP_receptor: Retinol 26.0 2.4E+02 0.0051 32.8 8.0 15 298-312 488-502 (617)
35 PLN02400 cellulose synthase 25.8 1.3E+02 0.0029 36.9 6.2 47 231-286 1017-1063(1085)
36 TIGR00869 sec62 protein transl 25.7 1.6E+02 0.0034 30.2 5.9 63 187-252 117-179 (232)
37 PF06679 DUF1180: Protein of u 25.3 25 0.00054 34.0 0.2 15 157-171 142-158 (163)
38 COG3336 Predicted membrane pro 24.5 8.9E+02 0.019 25.9 12.0 55 266-325 159-213 (299)
39 PF05297 Herpes_LMP1: Herpesvi 24.1 26 0.00055 37.1 0.0 123 192-325 29-162 (381)
40 PLN02953 phosphatidate cytidyl 24.1 9.2E+02 0.02 26.8 11.6 44 160-204 71-116 (403)
41 PF11833 DUF3353: Protein of u 22.7 1E+02 0.0022 30.4 3.9 44 195-239 121-164 (194)
42 KOG0253 Synaptic vesicle trans 22.6 60 0.0013 36.2 2.4 38 213-250 106-143 (528)
43 PF12273 RCR: Chitin synthesis 21.6 32 0.00069 31.2 0.1 9 221-229 1-9 (130)
44 PF06166 DUF979: Protein of un 21.5 1.2E+02 0.0026 32.3 4.2 48 203-251 17-64 (308)
45 PF03839 Sec62: Translocation 21.3 1.4E+02 0.003 30.3 4.6 21 232-252 151-171 (224)
46 KOG3088 Secretory carrier memb 21.2 1.6E+02 0.0035 31.2 5.1 47 182-234 135-181 (313)
47 KOG3402 Predicted membrane pro 20.9 4.9E+02 0.011 23.4 7.2 54 259-316 18-71 (101)
48 KOG1924 RhoA GTPase effector D 20.7 2.9E+02 0.0062 33.3 7.3 11 104-114 591-601 (1102)
49 PLN02915 cellulose synthase A 20.5 1.5E+02 0.0032 36.4 5.2 22 265-286 1002-1023(1044)
50 KOG0510 Ankyrin repeat protein 20.5 9.5E+02 0.021 29.3 11.4 51 175-234 586-636 (929)
51 PF12805 FUSC-like: FUSC-like 20.4 9.1E+02 0.02 24.5 12.7 17 271-287 82-98 (284)
52 PLN02638 cellulose synthase A 20.2 1.5E+02 0.0034 36.4 5.3 47 231-286 1012-1058(1079)
53 PRK11560 phosphoethanolamine t 20.1 1.3E+03 0.029 26.4 12.6 9 268-276 121-129 (558)
No 1
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=2.1e-70 Score=600.59 Aligned_cols=465 Identities=38% Similarity=0.612 Sum_probs=374.7
Q ss_pred eeecccCCCCceEEEcCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCcccchhhccccccC
Q 010264 17 ISEKKISNGSEVVIKIASEESPSVSTEKVTNGFESNSVPPVSCPSPEPEGARFTRSHTKPPKIPTTNDAVLIRRRSLARS 96 (514)
Q Consensus 17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~r~ 96 (514)
|.|.+.+||.|+.++..+++.++++ |.. +++..+| .| |+ ++ +|++.|-+. ...||+++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~l~~~--~~-p~--------~~-~~~~~~~~~--~~~~~~~~~~~ 61 (714)
T KOG4629|consen 1 MNEHRRSNGQELSYNVWDEEKSRAS----QIA-ESSLDIE--SP-PN--------SS-SPIFTPVSR--GRVRRRSLPYI 61 (714)
T ss_pred CCcccccCCCCCccccCCccccccc----hhh-heeccCC--CC-CC--------CC-CCceeeccc--chhhhccccce
Confidence 5678889999999999999777632 222 4555555 34 55 22 677777665 58999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccchhhhhhccCC-CCCCcCCCCCccccCCCCcccccc-CCCCCCCCchhHhhhhhhh
Q 010264 97 VYSKPKSRFGEPSYNDPNMIVEDDDSALSEQLGGN-SLSRTSCNTSKRSISSSRTNSIAT-KMSSIASDDEEEIYNKVEL 174 (514)
Q Consensus 97 ~~skpksr~~e~~~p~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ddde~~~~~~~~ 174 (514)
.||+++.||.|+-+-.--+..++...... -.... .--++.+| ++ +.-..+.+..+. ..+ -+.|+||++|..+.+
T Consensus 62 ~~~~~~~~~~~~~~~v~~t~~~~~~~~~~-~~~~s~~f~p~~~~-~~-n~~~~~~~~~s~~~a~-~~~~~e~~~~~~~~l 137 (714)
T KOG4629|consen 62 LYSQEELRRTEYGETVRCTSRKMPSMIFF-ASKRSRDFDPAEPN-NR-NRFSNSGETTSGELAP-SEKDEEESIFSEEKL 137 (714)
T ss_pred ecccccccccCCcceEEeccccChHhhhh-hhhcccccCCCCCC-CC-CcccCccccccccccC-Ccccccccccchhcc
Confidence 99999999999865433333333211111 11111 11133333 11 111011111100 011 223777888999999
Q ss_pred HHHh-hccCCceehHHHHHHHHHHHHHHhheeccccCCceeehhhHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhhhHh
Q 010264 175 IKEK-RKRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETNFLL 253 (514)
Q Consensus 175 ~~~~-~~~~~~~i~iew~~fv~il~lLl~slti~~l~~~~lwgl~LWkW~v~vlVl~~GrlVs~W~v~liv~lIernFll 253 (514)
+++. +.+.+++.+++|+.++++++.|+|+|+|+......+|.+..|+|++.+++++||++++.|++.+++|++++||++
T Consensus 138 ~~~~~~~~~~~~~~i~~I~~~~iv~~lv~~l~i~~~~~~~~~~~~~~kw~~~~~v~~~~~lv~~~~~~~vvf~~~~n~~~ 217 (714)
T KOG4629|consen 138 PDETRRSLLSSITVITWILLVLIVSSLVCSLGIHVHRLVTLWSLILWKWLVTLLVRITAVLVSSWFAALVVFLIESNFLR 217 (714)
T ss_pred chhhhhcccccHHHHHHHHHHHHHHHHHhhhhhheecccceEEEEeeeehhhhHHHHHHHHHHhhHHHHHHHHhhhhHHH
Confidence 9776 588999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhheeeeechhhhHHHHHHHH-HHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 010264 254 RKKVLYFVHGLKKSVQVFIWLA-LVLVTWVLLFNHGVKRSEVATKVLHYITWTLVTFLIGAFLWLLKTLSLKILASNFHV 332 (514)
Q Consensus 254 ~kkVLYfv~gLrk~v~~flWl~-lvLiaW~~Lf~~~v~rs~~t~~~l~~V~kvL~~llv~a~l~LlKklLVKlIAsSFH~ 332 (514)
+++++||++|+++.+|.|+|++ +++++|+.+|+..+.+....+ .+.+++++ +|+++.+++|++|++++|++|++||+
T Consensus 218 r~~~l~~v~~~~~~vq~~~~l~~lv~law~~l~d~~v~~~~r~~-~l~~~~~~-i~lli~~~~~lv~ti~~kv~as~f~~ 295 (714)
T KOG4629|consen 218 RKKVLYFVYGLRKFVQTGIWLGKLVLLAWIFLFDKIVFRKTRAK-FLAFVTML-ITLLITEFMWLVKTILMKVIASSFHR 295 (714)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhh-hhhhhhhh-hhhhHHHHHhhchhhhhHHHHHHHhH
Confidence 9999999999999999999999 999999999999887766555 78999999 99999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCchhhhhhcCCCCCCCccccccccCCccccccccchhhhhhccccccchHHHHHHH
Q 010264 333 NRFFDRIQESVFHQYVLQTLSGPPLIEEDERVGRAPSFGQLSIRSNKKGKEAKETKIIDMGKVHKMKQEKVSTWTMKLLV 412 (514)
Q Consensus 333 rtYfdRIqeSlf~qyvL~tLSgPpl~e~~e~~g~~~~~G~~s~~~~~~~~~~~~~~~i~~~~l~kl~~~~vSaW~mkrL~ 412 (514)
++|++||||++|+||+|++|||||+ +|++|+. +.++..+.+.+...+ ...|+++++|+|++.++|||+|+++|
T Consensus 296 s~~~~rI~e~~f~q~~l~~Lsg~p~---~e~~gr~-s~~~~~~s~~~~r~~---s~~i~~~~l~~~~~~~~sa~~~~~~~ 368 (714)
T KOG4629|consen 296 STYFSRIQESVFTQEVLETLSGPPR---EEDVGRE-STFRAIFSPGLSRSG---SAKIGMDKLHKIKKKNVSAWNMRRLM 368 (714)
T ss_pred HHHHhhcchhhhhHHHHHHhcCCcc---ccccccc-ccceeeccccccchh---hcccccchhhhhhHhhhcHhhhhHHH
Confidence 9999999999999999999999998 4556664 334444443322122 22289999999999999999999999
Q ss_pred HHHhcCCccccc--------------------------------------------------------------------
Q 010264 413 DAIMNSRLSTIS-------------------------------------------------------------------- 424 (514)
Q Consensus 413 ~~Vr~~~LsTls-------------------------------------------------------------------- 424 (514)
+.++.+++||++
T Consensus 369 ~~~~~~~~t~l~~~~~~s~~~~~~~~~i~s~~~a~~aA~~iF~nv~~p~~~~i~ld~~~~f~~~E~a~~~~slfe~~~~~ 448 (714)
T KOG4629|consen 369 TILAAGGLTTLSPGFQLSTSKDSSIIEIRSEKEAKIAARKIFKNVAKPGVILIDLDDLLRFMGDEEAERAFSLFEGASDE 448 (714)
T ss_pred HHHhccCcccCCccccccccccchhhhhhhhhhHHHHHHHHHhccCCCCccchhhhhhhhcCCHHHHHHHHHhhhhhccc
Confidence 998877666554
Q ss_pred --------------------------------------------------------------------------------
Q 010264 425 -------------------------------------------------------------------------------- 424 (514)
Q Consensus 425 -------------------------------------------------------------------------------- 424 (514)
T Consensus 449 ~Itrs~~~~~iv~~~~ERk~L~~tL~d~~taV~kL~~il~~Iv~vv~~~i~lil~~i~~~~~l~~~~sq~v~l~fif~~~ 528 (714)
T KOG4629|consen 449 NITRSSFKEWIVNIYRERKALARTLNDTKTAVNKLDRILNFIVAVVLLVIWLILLGINTSKLLLVISSQLVGLAFIFGNI 528 (714)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeeeeecccceeeeeehhhH
Confidence
Q ss_pred --hhhhcc---c--CCCCccCeeEeccceeEEeeeeeeeeEEEeecCeEEEeeccccccccccceecCCCCcccEEEEEE
Q 010264 425 --NTLDES---V--NEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVEFSIA 497 (514)
Q Consensus 425 --~~l~~~---~--~~~d~gD~~i~~e~e~vVeem~lL~TvF~r~dg~~v~~PNsvL~tk~I~N~~RS~~m~e~~~~~V~ 497 (514)
+.++++ | ||||+|||+.+|+.+|+|+|||||+|||.++||++|+|||++|++|+|.|+||||+|+|.++|+|+
T Consensus 529 ~k~~~esiIFlfv~HPyDvGDRv~VDg~~~vVeemnLlsTvF~~~dg~kI~~PNS~L~~k~I~N~rRS~~~~~~v~f~i~ 608 (714)
T KOG4629|consen 529 VKELLESIIFLFVMHPYDVGDRVVVDGVNLVVEEMNLLSTVFLRVDGRKIFIPNSVLWTKAISNYRRSPDMGDEVEFLIS 608 (714)
T ss_pred HHHHHHHHhheeecCCCCCCCeEEEeceEEEEEEeccceEEEEEECCeEEEeecHHHHhhhhhhhhcCccccccEEEEec
Confidence 011222 1 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHh
Q 010264 498 FVTPVERIAMLKEKIK 513 (514)
Q Consensus 498 ~~Tp~eki~~Lk~~i~ 513 (514)
++||+|||+.||+||.
T Consensus 609 ~~T~~~Ki~~Lk~rI~ 624 (714)
T KOG4629|consen 609 SSTPFEKIERLKERIA 624 (714)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999999986
No 2
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=99.28 E-value=3.9e-12 Score=119.98 Aligned_cols=82 Identities=33% Similarity=0.370 Sum_probs=67.8
Q ss_pred CCCCccCeeEeccceeEEeeeeeeeeEEEeecCeEEEeeccccccccccceec-CCCCcccEEEEEEecCCHHHHHHHHH
Q 010264 432 NEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNR-SPDMGDTVEFSIAFVTPVERIAMLKE 510 (514)
Q Consensus 432 ~~~d~gD~~i~~e~e~vVeem~lL~TvF~r~dg~~v~~PNsvL~tk~I~N~~R-S~~m~e~~~~~V~~~Tp~eki~~Lk~ 510 (514)
.||++||++.+++.+..|++|++++|.++.+||+.+++||+.|.++.|.|++| ++.++..++|.|+++++.++++.+.+
T Consensus 59 ~pf~vGD~I~i~~~~G~V~~I~l~~t~l~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~v~~~v~~~~~~~~~~~~~~ 138 (206)
T PF00924_consen 59 RPFKVGDRIEIGGVEGRVEEIGLRSTRLRTWDGEIVIIPNSKLISSPIVNYSRSSPYRRVVVEIPVDYDTDPEKIEELRE 138 (206)
T ss_dssp -SS-TT-EEESSS-EEEEEEE-SSEEEEEETTS-EEEEEHHHHHCS-EEETTT-SSEEEEEEEEEE-TTS----HHHHHH
T ss_pred CCccCCCEEEEEEeehHHHhcCcceeeeecCCCCEEEEEchheeeEEEEEeeccCCceeeeeeeeEecCCCchHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999 99999999999999999999999888
Q ss_pred HHh
Q 010264 511 KIK 513 (514)
Q Consensus 511 ~i~ 513 (514)
++.
T Consensus 139 ~i~ 141 (206)
T PF00924_consen 139 KIE 141 (206)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 3
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=98.73 E-value=1.4e-06 Score=98.66 Aligned_cols=74 Identities=15% Similarity=0.106 Sum_probs=66.3
Q ss_pred CCCCccCeeEeccceeEEeeeeeeeeEEEeecCeEEEeeccccccccccceecCCCCcccEEEEEEecCCHHHHHHH
Q 010264 432 NEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVEFSIAFVTPVERIAML 508 (514)
Q Consensus 432 ~~~d~gD~~i~~e~e~vVeem~lL~TvF~r~dg~~v~~PNsvL~tk~I~N~~RS~~m~e~~~~~V~~~Tp~eki~~L 508 (514)
.||.+||.+.+++.+=.||+|++-+|..+.+||..+++||+.+.+ |.|+.|. .+.-.+++.|+++|..||...+
T Consensus 572 ~pf~vGD~I~v~g~~GtVe~I~lRsT~iRt~dg~~i~IPNs~i~~--v~N~Sr~-~~~~~v~v~V~Y~~Didka~~i 645 (741)
T PRK11465 572 NGMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITT--FANFVRG-IGSVVANYDVDRHEDADKANQA 645 (741)
T ss_pred CCcCCCCEEEECCeEEEEEEEeeeEEEEEcCCCCEEEEECCccee--eEEeccC-ceEEEEEEEeCCCCCHHHHHHH
Confidence 499999999999999999999999999999999999999999986 9999987 3356678999999999985544
No 4
>PRK11281 hypothetical protein; Provisional
Probab=98.72 E-value=4e-07 Score=106.99 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=71.8
Q ss_pred CCCCccCeeEeccceeEEeeeeeeeeEEEeecCeEEEeeccccccccccceecCCC-CcccEEEEEEecCCHHHHHHH
Q 010264 432 NEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPD-MGDTVEFSIAFVTPVERIAML 508 (514)
Q Consensus 432 ~~~d~gD~~i~~e~e~vVeem~lL~TvF~r~dg~~v~~PNsvL~tk~I~N~~RS~~-m~e~~~~~V~~~Tp~eki~~L 508 (514)
.||.+||.+.+++.+=.|+||++.+|.-+.+||..|++||+.+.+..|.|+.+++. +.-.+++.|.++++.++...+
T Consensus 937 RPfrIGD~I~I~~~~G~V~~I~lRsT~Irt~D~~~ViIPNs~~~t~~IiN~S~~~~~~Rv~i~vgV~Y~sDi~~v~~i 1014 (1113)
T PRK11281 937 RPVRIGDTVTIGTFSGTVSKIRIRATTITDFDRKEVIVPNKAFVTERLINWSLSDTVTRVVIKVGVAYGSDLEKVREL 1014 (1113)
T ss_pred CCcCCCCEEEECCEEEEEEEEEeEEEEEEcCCCCEEEEechhhhcCceEeCCCCCcceEEEEEEEeCCCCCHHHHHHH
Confidence 39999999999998899999999999999999999999999999999999999986 689999999999999986644
No 5
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=98.68 E-value=1.1e-06 Score=103.19 Aligned_cols=77 Identities=16% Similarity=0.162 Sum_probs=71.4
Q ss_pred CCCCccCeeEeccceeEEeeeeeeeeEEEeecCeEEEeeccccccccccceecCCC-CcccEEEEEEecCCHHHHHHH
Q 010264 432 NEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPD-MGDTVEFSIAFVTPVERIAML 508 (514)
Q Consensus 432 ~~~d~gD~~i~~e~e~vVeem~lL~TvF~r~dg~~v~~PNsvL~tk~I~N~~RS~~-m~e~~~~~V~~~Tp~eki~~L 508 (514)
.||.+||.+.+++.+=.|++|++.+|..+.+||..|++||+.+.+..|.|+.+++. +.-.+++.|+++|..++...+
T Consensus 934 rPfrVGD~I~I~~~~GtV~~I~lRsT~Irt~Dg~~IiIPNs~~it~~IiN~S~~d~~~Rv~i~VgV~Y~sDie~v~~i 1011 (1109)
T PRK10929 934 KPIRIGDTVTIRDLTGSVTKINTRATTISDWDRKEIIVPNKAFITEQFINWSLSDSVTRVVLTIPAPADANSEEVTEI 1011 (1109)
T ss_pred CCCCCCCEEEECCEEEEEEEEeeeEEEEEeCCCCEEEEEChhhhcCceEecCCCCcceEEEEEEEeCCCCCHHHHHHH
Confidence 48999999999999899999999999999999999999999999999999999986 477899999999999987654
No 6
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=98.62 E-value=9.5e-08 Score=97.27 Aligned_cols=80 Identities=15% Similarity=0.228 Sum_probs=74.3
Q ss_pred CCCCccCeeEeccceeEEeeeeeeeeEEEeecCeEEEeeccccccccccceecCCCCcccEEEEEEecCCHHHHHHHHHH
Q 010264 432 NEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVEFSIAFVTPVERIAMLKEK 511 (514)
Q Consensus 432 ~~~d~gD~~i~~e~e~vVeem~lL~TvF~r~dg~~v~~PNsvL~tk~I~N~~RS~~m~e~~~~~V~~~Tp~eki~~Lk~~ 511 (514)
.||.+||.+.+++.+=.|++|++.+|..+..||..|++||+.+.+..|.|++|.+.....+++.|+++++.++...+=.+
T Consensus 128 rpf~vGD~I~i~~~~G~V~~I~~r~T~i~t~d~~~v~IPNs~~~~~~i~N~s~~~~rr~~~~v~V~y~~d~~~~~~il~~ 207 (286)
T PRK10334 128 RPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTN 207 (286)
T ss_pred CCCCCCCEEEECCEEEEEEEEEeEEEEEEcCCCCEEEEcchHhcCCeeEEcCCCCeEEEEEEEEecCCCCHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999988888999999999999997665433
No 7
>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=98.51 E-value=3.2e-07 Score=91.19 Aligned_cols=81 Identities=23% Similarity=0.333 Sum_probs=75.5
Q ss_pred CCCCccCeeEec-cceeEEeeeeeeeeEEEeecCeEEEeeccccccccccceecCCCCcccEEEEEEecCCHHHHHHHHH
Q 010264 432 NEGEHADMEITN-EMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVEFSIAFVTPVERIAMLKE 510 (514)
Q Consensus 432 ~~~d~gD~~i~~-e~e~vVeem~lL~TvF~r~dg~~v~~PNsvL~tk~I~N~~RS~~m~e~~~~~V~~~Tp~eki~~Lk~ 510 (514)
+||.+||.+.+. +.+=.|++|++.+|..+.+||..+.+||+.+.+..|.|+.|++.....+++.|.++++.++...+-.
T Consensus 146 ~~f~vGD~I~i~~~~~G~V~~i~~~~T~ir~~dg~~v~iPNs~i~~~~i~N~s~~~~~~~~~~v~v~~~~~~~~~~~i~~ 225 (316)
T COG0668 146 RPFKVGDWIEIGSGVEGTVEDIGLRSTTIRTLDGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYDSDLEKALKILK 225 (316)
T ss_pred cCcCcCCEEEECCCceEEEEEEEEEEEEEEcCCCCEEEccchhhccCceEeCCCCCcEEEEEEEeeccCCCHHHHHHHHH
Confidence 489999999999 6899999999999999999999999999999999999999999988999999999999999777665
Q ss_pred HH
Q 010264 511 KI 512 (514)
Q Consensus 511 ~i 512 (514)
++
T Consensus 226 ~~ 227 (316)
T COG0668 226 EV 227 (316)
T ss_pred HH
Confidence 44
No 8
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=97.58 E-value=0.0014 Score=75.28 Aligned_cols=76 Identities=16% Similarity=0.217 Sum_probs=69.5
Q ss_pred CCCccCeeEeccceeEEeeeeeeeeEEEeecCeEEEeeccccccccccceecCC-CCcccEEEEEEecCCHHHHHHH
Q 010264 433 EGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSP-DMGDTVEFSIAFVTPVERIAML 508 (514)
Q Consensus 433 ~~d~gD~~i~~e~e~vVeem~lL~TvF~r~dg~~v~~PNsvL~tk~I~N~~RS~-~m~e~~~~~V~~~Tp~eki~~L 508 (514)
|+-+||.+-+.+.+=+|.||++=.|+-..+||+.|.+||+.+-|..+.|..=++ ...-.+.+.+.|+|..|+.-.+
T Consensus 660 pvkvGD~It~g~~~G~V~~I~vRAT~I~~fd~~~vIVPNs~fI~~qV~NWs~~~~~~R~~i~v~vay~sD~~~V~~~ 736 (835)
T COG3264 660 PVKVGDTVTIGTVSGTVRKISVRATTIRTFDRKEVIVPNSAFITEQVINWSLRDTTTRLVIPVGVAYGSDPELVREL 736 (835)
T ss_pred CcccCCEEEECCceEEEEEEEeeEEEEEeCCCCeEEeccHHHHhhheeeeeccCceEEEEEEecccCCCCHHHHHHH
Confidence 899999999999999999999999999999999999999999999999997776 4557899999999999986544
No 9
>PRK11281 hypothetical protein; Provisional
Probab=88.55 E-value=1.5 Score=53.02 Aligned_cols=96 Identities=10% Similarity=0.227 Sum_probs=48.8
Q ss_pred ehHHHHHHHHHHHHHHhhe--eccccCCceeehh-------------hHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhh
Q 010264 186 DLIQWVAFLCNVGCLIVSL--TVNKWENFMIWGL-------------EIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETN 250 (514)
Q Consensus 186 i~iew~~fv~il~lLl~sl--ti~~l~~~~lwgl-------------~LWkW~v~vlVl~~GrlVs~W~v~liv~lIern 250 (514)
-++.|++|++.+-.++.-+ .++.+.+.++|+. .++.-...+++++.+++++.++.+++-.++...
T Consensus 788 ~~~~~~~~~~~~~~~w~~~~~~~~~l~~i~l~~~~~~~~~~~~~~~itl~~Ll~allIl~i~~~l~r~l~~ll~~~~~~r 867 (1113)
T PRK11281 788 DLLLFALFFVMFYWVWSDLITVFSYLDSITLWHYTTTTAGGAVVESITLGNLLFALIILVVTYVLVRNLPGLLEVLVLSR 867 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhccccccccceeeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444333333111 3456668887754 355555555555555655555444333222222
Q ss_pred hHhhhhheeeeechhhhHHHHHHHHHHHHHHHHH
Q 010264 251 FLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLL 284 (514)
Q Consensus 251 Fll~kkVLYfv~gLrk~v~~flWl~lvLiaW~~L 284 (514)
+.+.....|+ +.+-+..++|++++++++..+
T Consensus 868 l~l~~~~~~~---i~~li~y~I~~i~iliaL~~l 898 (1113)
T PRK11281 868 LNLRQGTSYA---ITTLLTYIIIAVGAVTAFSTL 898 (1113)
T ss_pred ccCCchHHHH---HHHHHHHHHHHHHHHHHHHHc
Confidence 2222333333 456667778888887777654
No 10
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=59.65 E-value=72 Score=37.68 Aligned_cols=19 Identities=11% Similarity=0.326 Sum_probs=12.9
Q ss_pred CCCCCCchhHhhhhhhhHH
Q 010264 158 SSIASDDEEEIYNKVELIK 176 (514)
Q Consensus 158 ~~~~~ddde~~~~~~~~~~ 176 (514)
+.=.+++||-++++.|+.+
T Consensus 387 tvf~~~~De~Il~~lD~~~ 405 (830)
T KOG1923|consen 387 TVFHELNDEKILEALDFSR 405 (830)
T ss_pred chhhhhhHHHHHHhhhHHH
Confidence 3355788888888766653
No 11
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=49.59 E-value=2e+02 Score=28.76 Aligned_cols=11 Identities=18% Similarity=0.791 Sum_probs=6.0
Q ss_pred HHHHHHHHHHH
Q 010264 307 VTFLIGAFLWL 317 (514)
Q Consensus 307 ~~llv~a~l~L 317 (514)
.++++.+++|+
T Consensus 224 la~lvl~~I~i 234 (248)
T PF11368_consen 224 LAILVLIIIWI 234 (248)
T ss_pred HHHHHHHHHHH
Confidence 44455556665
No 12
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=48.21 E-value=62 Score=33.95 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=12.7
Q ss_pred HHHHHHhhcchhhhHHH
Q 010264 321 LSLKILASNFHVNRFFD 337 (514)
Q Consensus 321 lLVKlIAsSFH~rtYfd 337 (514)
.++-++++.+|.|.|.+
T Consensus 280 ~~~~~l~s~~~lR~f~~ 296 (297)
T COG2177 280 VLIAWLASLRHLRRFLR 296 (297)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45667888899987754
No 13
>PRK10263 DNA translocase FtsK; Provisional
Probab=47.85 E-value=4.6e+02 Score=33.31 Aligned_cols=19 Identities=0% Similarity=0.109 Sum_probs=10.0
Q ss_pred hhcchhhhHHHHHHHHHHH
Q 010264 327 ASNFHVNRFFDRIQESVFH 345 (514)
Q Consensus 327 AsSFH~rtYfdRIqeSlf~ 345 (514)
...+....+++++...+.+
T Consensus 178 lTglSwlsIleriG~~v~~ 196 (1355)
T PRK10263 178 FTGWSWVTIAEKLGGWILN 196 (1355)
T ss_pred HHhhHHHHHHHHHHHHHHH
Confidence 3334455666777554433
No 14
>COG3256 NorB Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]
Probab=44.88 E-value=2.3e+02 Score=33.11 Aligned_cols=151 Identities=19% Similarity=0.175 Sum_probs=85.0
Q ss_pred ccCCceehHHHHHHHHHHHHHHhhe-ec--cccCCce----------------------eehhhHHHHHH-------HHH
Q 010264 180 KRMTPMDLIQWVAFLCNVGCLIVSL-TV--NKWENFM----------------------IWGLEIWKWCV-------LVL 227 (514)
Q Consensus 180 ~~~~~~i~iew~~fv~il~lLl~sl-ti--~~l~~~~----------------------lwgl~LWkW~v-------~vl 227 (514)
..++.+....|...+..+.++=+.+ |. ..+-|.- +--+++|+|-- ..+
T Consensus 477 g~V~rs~a~~a~~v~~~l~l~sGiiGT~HHyYf~G~P~~wm~iGAvfSaLEVvPl~~l~~~af~~~~r~~~~~~~~r~~~ 556 (717)
T COG3256 477 GGVDRSVAEKALYVIAALALFSGIIGTLHHYYFIGTPGYWMWIGAVFSALEVVPLFLLGLEAFELWKRGEGRDWPNRARL 556 (717)
T ss_pred CCcCHHHHHHHHHHHHHHHHHcCccCccceeeecCCchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccchhhhHHH
Confidence 4556677778887776666654333 11 1111211 11345566541 233
Q ss_pred HHHhhHHHHHHHHhhhhhhhhhhhHhhhhheeeeechhhhH------HHHHHHHHHHHHHHHHHhcCCCCccchhhHHHH
Q 010264 228 VIFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSV------QVFIWLALVLVTWVLLFNHGVKRSEVATKVLHY 301 (514)
Q Consensus 228 Vl~~GrlVs~W~v~liv~lIernFll~kkVLYfv~gLrk~v------~~flWl~lvLiaW~~Lf~~~v~rs~~t~~~l~~ 301 (514)
.+-|+-=+..|+++..++.+-.|.- -|+||++|++.-. .+-.|..+.+..|..-+..--.......+-+..
T Consensus 557 ~~~~~~Av~~wfvGAgv~Gflin~p---ivnYY~hG~q~TaaHaHlAffgvYgml~i~mm~~Al~~l~~~~~~~~kl~~~ 633 (717)
T COG3256 557 PWSCFVAVGAWFVGAGVFGFLINPP---IVNYYTHGLQTTAAHAHLAFFGVYGMLALAMMLYALRELRPIGEAPDKLLRW 633 (717)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccch---hHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHH
Confidence 3445555667788887777555554 6789999997543 233566666666666665432112222334555
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhhcchhh
Q 010264 302 ITWTLVTFLIGAF-LWLLKTLSLKILASNFHVN 333 (514)
Q Consensus 302 V~kvL~~llv~a~-l~LlKklLVKlIAsSFH~r 333 (514)
...++..-|+..+ +-|.=.-.+|+-++.-|--
T Consensus 634 afw~m~~gl~~m~~~sL~~aG~~Q~~~s~~~G~ 666 (717)
T COG3256 634 AFWLMNGGLVLMTAISLLPAGVVQAWLSITHGY 666 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5555555555444 6666667888888876654
No 15
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=44.26 E-value=79 Score=38.21 Aligned_cols=39 Identities=15% Similarity=0.405 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCC--CCcc-chhhHHHHHHHHHHHHHHH
Q 010264 274 LALVLVTWVLLFNHGV--KRSE-VATKVLHYITWTLVTFLIG 312 (514)
Q Consensus 274 l~lvLiaW~~Lf~~~v--~rs~-~t~~~l~~V~kvL~~llv~ 312 (514)
.-++|+.|..+|++.| +-.+ +++++|..|+-+..-+|++
T Consensus 611 gkaiwllwaLvFnnsVpv~nPKgtTskiMv~VWAfFavifLA 652 (1258)
T KOG1053|consen 611 GKAIWLLWALVFNNSVPVENPKGTTSKIMVLVWAFFAVIFLA 652 (1258)
T ss_pred hhHHHHHHHHHhCCCcCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 3356778999999874 4333 5667776665555544544
No 16
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=42.26 E-value=2.5e+02 Score=25.05 Aligned_cols=34 Identities=9% Similarity=0.160 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhhh
Q 010264 218 EIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETNF 251 (514)
Q Consensus 218 ~LWkW~v~vlVl~~GrlVs~W~v~liv~lIernF 251 (514)
.+++=.+-+..+++|.+++.|....+.-.+.+++
T Consensus 20 G~~~~~~~l~~~i~a~~~a~~~~~~~~~~l~~~~ 53 (146)
T PF02674_consen 20 GFIRELFSLIGLIVALFVAFLFYPPLAPFLSNYF 53 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4666556666677777888877777777777765
No 17
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=39.35 E-value=88 Score=33.18 Aligned_cols=31 Identities=6% Similarity=0.323 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHhhhhhh
Q 010264 216 GLEIWKWCVLVLVIFCGMLVTNWFMHVIVFV 246 (514)
Q Consensus 216 gl~LWkW~v~vlVl~~GrlVs~W~v~liv~l 246 (514)
.+++|-.++++.+++.+.++..|+++.+..+
T Consensus 38 e~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (398)
T PRK10747 38 ETSVTGLAIILILAMVVLFAIEWLLRRIFRT 68 (398)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5688888777777777777777777766554
No 18
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=36.76 E-value=3.9e+02 Score=27.36 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 010264 296 TKVLHYITWTLVTFLIGAFLWLL-KTLSLKIL 326 (514)
Q Consensus 296 ~~~l~~V~kvL~~llv~a~l~Ll-KklLVKlI 326 (514)
+.|+....+.++++++..+++|+ =+++++.+
T Consensus 176 ~Ew~~i~~~~i~~~~l~v~~~l~tltl~L~a~ 207 (232)
T PF10329_consen 176 REWFAILLRTIIKLVLLVVVILITLTLILRAF 207 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888887776666654 34444443
No 19
>KOG3012 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.50 E-value=2.5e+02 Score=28.97 Aligned_cols=68 Identities=18% Similarity=0.387 Sum_probs=36.7
Q ss_pred HHHHHHHHHhheec--cccCCceeeh-hhHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhhhHhhh-----hheeeeech
Q 010264 193 FLCNVGCLIVSLTV--NKWENFMIWG-LEIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETNFLLRK-----KVLYFVHGL 264 (514)
Q Consensus 193 fv~il~lLl~slti--~~l~~~~lwg-l~LWkW~v~vlVl~~GrlVs~W~v~liv~lIernFll~k-----kVLYfv~gL 264 (514)
|++++.+++|.-+| ...-+.+.+| +...-|.+++.+++.|-.+|- +..++.+.++.++ -.+.+.|..
T Consensus 84 FlVl~s~~l~vssi~~a~~~~ls~~g~v~~~~~vvfvdf~~vG~iiAT-----~~wfi~Nryl~k~~~s~d~~vEW~YcF 158 (259)
T KOG3012|consen 84 FLVLLSLLLVVSSIGWAYVLDLSFIGFVKFLVWVVFVDFIIVGVIIAT-----LFWFISNRYLRKRKSSRDYDVEWGYCF 158 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhHHHHhhccccccceeeeeee
Confidence 44444444432222 2333444454 466778888888887776654 4455666665432 234555554
Q ss_pred h
Q 010264 265 K 265 (514)
Q Consensus 265 r 265 (514)
-
T Consensus 159 D 159 (259)
T KOG3012|consen 159 D 159 (259)
T ss_pred e
Confidence 3
No 20
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=35.48 E-value=97 Score=37.00 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=7.6
Q ss_pred HHHHHHhheecc
Q 010264 196 NVGCLIVSLTVN 207 (514)
Q Consensus 196 il~lLl~slti~ 207 (514)
-++.+++|+-.+
T Consensus 703 nLsIflgS~rmp 714 (1102)
T KOG1924|consen 703 NLSIFLGSFRMP 714 (1102)
T ss_pred HHHHHHhhccCC
Confidence 566677777544
No 21
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=34.69 E-value=2.3e+02 Score=27.96 Aligned_cols=29 Identities=7% Similarity=0.128 Sum_probs=18.9
Q ss_pred HHHHHHHHhhHHHHHHHHhhhhhhhhhhh
Q 010264 223 CVLVLVIFCGMLVTNWFMHVIVFVIETNF 251 (514)
Q Consensus 223 ~v~vlVl~~GrlVs~W~v~liv~lIernF 251 (514)
..|.++...|+|+--++.++++.++.|.|
T Consensus 77 llw~~~aL~~YW~LSllLgl~~~lLgR~f 105 (177)
T PF14965_consen 77 LLWGAVALLAYWFLSLLLGLLFALLGRVF 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566676777777777777777774433
No 22
>COG4818 Predicted membrane protein [Function unknown]
Probab=34.59 E-value=1.9e+02 Score=26.19 Aligned_cols=44 Identities=14% Similarity=0.520 Sum_probs=27.1
Q ss_pred HHHHhhhhhhhhhhhHhhhhheeeeechhhhH-HHHHHHHHHHHHHHHHH
Q 010264 237 NWFMHVIVFVIETNFLLRKKVLYFVHGLKKSV-QVFIWLALVLVTWVLLF 285 (514)
Q Consensus 237 ~W~v~liv~lIernFll~kkVLYfv~gLrk~v-~~flWl~lvLiaW~~Lf 285 (514)
+|+.+++..++||.-.+.| -|+++--+ -.-+|+++.+++|-|-+
T Consensus 14 gwitGllFlllEre~~FVr-----FHAmQS~ltF~~l~~l~ill~~iP~I 58 (105)
T COG4818 14 GWITGLLFLLLERESKFVR-----FHAMQSFLTFLGLWLLIILLAFIPYI 58 (105)
T ss_pred HHHHHHHHHHhhccCccee-----ehhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5899999999998433321 12222221 14578888888887643
No 23
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=32.12 E-value=6.7e+02 Score=28.89 Aligned_cols=32 Identities=9% Similarity=0.232 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 010264 300 HYITWTLVTFLIGAFLWLLKTLSLKILASNFH 331 (514)
Q Consensus 300 ~~V~kvL~~llv~a~l~LlKklLVKlIAsSFH 331 (514)
..+..++.+++...+..++=.+||=++..+|-
T Consensus 585 ~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~ 616 (743)
T TIGR00870 585 EFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQ 616 (743)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34566666666666666666777777776654
No 24
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=31.57 E-value=1.4e+02 Score=31.81 Aligned_cols=33 Identities=6% Similarity=0.172 Sum_probs=20.1
Q ss_pred ehhhHHHHHHHHHHHHhhHHHHHHHHhhhhhhh
Q 010264 215 WGLEIWKWCVLVLVIFCGMLVTNWFMHVIVFVI 247 (514)
Q Consensus 215 wgl~LWkW~v~vlVl~~GrlVs~W~v~liv~lI 247 (514)
..+++|--++++.+++...++..|+++.+..+-
T Consensus 37 ie~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~p 69 (409)
T TIGR00540 37 IEMSITGLAIFFIIALAIIFAFEWGLRRFFRLG 69 (409)
T ss_pred EEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 356777766666666666656666666555444
No 25
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.45 E-value=4.1e+02 Score=29.31 Aligned_cols=38 Identities=8% Similarity=-0.102 Sum_probs=25.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhcch
Q 010264 294 VATKVLHYITWTLVTFLIGAFLWLLKT---LSLKILASNFH 331 (514)
Q Consensus 294 ~t~~~l~~V~kvL~~llv~a~l~LlKk---lLVKlIAsSFH 331 (514)
....++..+.+.+..+|+-+.++..+. ++|++|...+|
T Consensus 251 RS~~ilmWtLqli~lvl~Yfsvq~p~~a~A~iI~~lc~~~l 291 (452)
T KOG3817|consen 251 RSQTILMWTLQLIGLVLAYFSVQHPSAAIAAIIMVLCFVAL 291 (452)
T ss_pred chhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 335678888888888887666666543 35666666555
No 26
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=31.12 E-value=2.7e+02 Score=30.72 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHH
Q 010264 300 HYITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQE 341 (514)
Q Consensus 300 ~~V~kvL~~llv~a~l~LlKklLVKlIAsSFH~rtYfdRIqe 341 (514)
++.+-+++.+++..++.+++.++..++..++|.+.||.+=+.
T Consensus 40 Sl~~lv~~~ii~lvv~~~l~~~l~~v~~~~~~~~~w~~~rKr 81 (400)
T COG3071 40 SLTTLVIFLIIALVVLYLLEWLLRRVLRTPAHTRGWFSRRKR 81 (400)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344556666677778889999999999999999999985443
No 27
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=29.28 E-value=60 Score=25.10 Aligned_cols=24 Identities=17% Similarity=0.477 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHhhhhhhhhh
Q 010264 226 VLVIFCGMLVTNWFMHVIVFVIET 249 (514)
Q Consensus 226 vlVl~~GrlVs~W~v~liv~lIer 249 (514)
+.+++.|+|++.|+.+++-.++++
T Consensus 22 ilIl~vG~~va~~v~~~~~~~l~~ 45 (53)
T PF05552_consen 22 ILILIVGWWVAKFVRKLVRRLLEK 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 28
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=28.24 E-value=7.4e+02 Score=26.24 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=48.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHH
Q 010264 264 LKKSVQVFIWLALVLVTWVLLFNHGVKRSEVATKVLHYITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQE 341 (514)
Q Consensus 264 Lrk~v~~flWl~lvLiaW~~Lf~~~v~rs~~t~~~l~~V~kvL~~llv~a~l~LlKklLVKlIAsSFH~rtYfdRIqe 341 (514)
-.+-+...+|.+++++....+.---. +-. -..+....+...++.++.+.+++..++.-.+...-++=+ ++|.++
T Consensus 192 ~~~~~~~l~~~~li~~Pl~li~la~~-GY~--yTA~~L~~~l~~sl~l~~~~~l~~~l~~Rwl~v~~RRLA-~~Ra~~ 265 (340)
T PF12794_consen 192 WIHRLRYLWWPLLILAPLALIVLALL-GYY--YTALQLLERLILSLYLLLGWLLVYQLILRWLLVARRRLA-YERAKE 265 (340)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 33445566666666554443322110 111 234567889999999999999999999999999766665 466665
No 29
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=27.85 E-value=8.8e+02 Score=27.65 Aligned_cols=9 Identities=44% Similarity=1.110 Sum_probs=5.3
Q ss_pred HHHHHHHHH
Q 010264 268 VQVFIWLAL 276 (514)
Q Consensus 268 v~~flWl~l 276 (514)
+.+++|+++
T Consensus 121 ~~~~~~~l~ 129 (545)
T PRK11598 121 PQMLLWLGL 129 (545)
T ss_pred HHHHHHHHH
Confidence 455666664
No 30
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=27.36 E-value=6.2e+02 Score=25.09 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=19.2
Q ss_pred hccCCceehHHHHHHHHHHHHHHhh
Q 010264 179 RKRMTPMDLIQWVAFLCNVGCLIVS 203 (514)
Q Consensus 179 ~~~~~~~i~iew~~fv~il~lLl~s 203 (514)
|.++++.+++..+++++.++-+.+.
T Consensus 34 Ks~lk~l~~~h~ll~l~~~a~v~~~ 58 (186)
T PF07086_consen 34 KSRLKKLILFHALLWLLMAAKVSVD 58 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788889999998888877665533
No 31
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=27.11 E-value=92 Score=34.11 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=5.0
Q ss_pred EEEcCCCCCC
Q 010264 29 VIKIASEESP 38 (514)
Q Consensus 29 ~~~~~~~~~~ 38 (514)
+-.|+....+
T Consensus 143 la~i~~gaAp 152 (457)
T KOG0559|consen 143 LAKISPGAAP 152 (457)
T ss_pred eEEecCCCCC
Confidence 5556554333
No 32
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=27.01 E-value=3.2e+02 Score=28.49 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCcccchhhccccccCCCCCC
Q 010264 72 SHTKPPKIPTTNDAVLIRRRSLARSVYSKP 101 (514)
Q Consensus 72 ~~~~~p~~p~~~~~~~~~~~~~~r~~~skp 101 (514)
.|+.=-|+|++.+ ..--+.+.-++|++|
T Consensus 76 ~p~~~~ki~~~ss--~~~d~~~~d~vfp~~ 103 (262)
T KOG4812|consen 76 LPPPYSKIPQESS--DIQDGAMFDSVFPNL 103 (262)
T ss_pred CCCccccccccch--hhhchhhccccCCCC
Confidence 3444446676653 444556666788776
No 33
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=26.22 E-value=6.3e+02 Score=26.69 Aligned_cols=93 Identities=19% Similarity=0.255 Sum_probs=45.3
Q ss_pred hHHHHHH--HHHHHHhhHHHHHHHHhhhhhhhhhhhHhh----h-h-----heeeeechhhhHHHHHHHHHHHHH---HH
Q 010264 218 EIWKWCV--LVLVIFCGMLVTNWFMHVIVFVIETNFLLR----K-K-----VLYFVHGLKKSVQVFIWLALVLVT---WV 282 (514)
Q Consensus 218 ~LWkW~v--~vlVl~~GrlVs~W~v~liv~lIernFll~----k-k-----VLYfv~gLrk~v~~flWl~lvLia---W~ 282 (514)
+-|||.+ +.++.+.|+|...-+..++.|+--|-|+.- + + .+|+...++..+-..-|-....+. +.
T Consensus 41 ~aWW~mv~i~~~~~~l~~~~~l~lF~~iSflalrEfltl~ptr~~d~~~l~~~Y~~lplqy~~i~i~wy~mf~ifipvY~ 120 (303)
T COG4589 41 RAWWVMVIIFSLVISLPRWMTLTLFGLISFLALREFLTLIPTRRPDHLALVWFYWVLPLQYLLIGIDWYEMFIIFIPVYG 120 (303)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCccchhhhhhhhhHhHHHhhhHHHHHHHHHHHHHH
Confidence 4477654 345556666666655666665555555421 1 1 246666666555555555332221 11
Q ss_pred HHHh--cCCCCccchhhHHHHHHHHHHHHHH
Q 010264 283 LLFN--HGVKRSEVATKVLHYITWTLVTFLI 311 (514)
Q Consensus 283 ~Lf~--~~v~rs~~t~~~l~~V~kvL~~llv 311 (514)
+++- ..+=. ..++..+..+.++-.++++
T Consensus 121 fL~Lp~l~~L~-gdt~gFl~~~s~i~wg~ml 150 (303)
T COG4589 121 FLILPILMVLV-GDTSGFLHRVSAIQWGWML 150 (303)
T ss_pred HHHHHHHHHHh-cchhhHHHHhHHHHHHHHH
Confidence 1221 11101 1235566666666666555
No 34
>PF14752 RBP_receptor: Retinol binding protein receptor
Probab=25.96 E-value=2.4e+02 Score=32.78 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHH
Q 010264 298 VLHYITWTLVTFLIG 312 (514)
Q Consensus 298 ~l~~V~kvL~~llv~ 312 (514)
.+..+.|++.+.+.+
T Consensus 488 l~~~~~R~l~s~l~~ 502 (617)
T PF14752_consen 488 LLSCLWRLLKSALFG 502 (617)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345667777777766
No 35
>PLN02400 cellulose synthase
Probab=25.81 E-value=1.3e+02 Score=36.93 Aligned_cols=47 Identities=15% Similarity=0.338 Sum_probs=27.1
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHhhhhheeeeechhhhHHHHHHHHHHHHHHHHHHh
Q 010264 231 CGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLLFN 286 (514)
Q Consensus 231 ~GrlVs~W~v~liv~lIernFll~kkVLYfv~gLrk~v~~flWl~lvLiaW~~Lf~ 286 (514)
.+.+.+.|++-++.-|++-.|. |+ =|.|...++|+++..+.+..|.-
T Consensus 1017 ~~~~~~~wvvv~l~Pf~kgL~g-R~--------~r~P~~v~~~s~lla~~~~l~~v 1063 (1085)
T PLN02400 1017 GKLFFAIWVIAHLYPFLKGLLG-RQ--------NRTPTIVIVWSILLASIFSLLWV 1063 (1085)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-cC--------CCCceeHHHHHHHHHHHHHHHhe
Confidence 3444455554444444443322 22 25688889999888777776643
No 36
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=25.67 E-value=1.6e+02 Score=30.18 Aligned_cols=63 Identities=14% Similarity=0.305 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHhheeccccCCceeehhhHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhhhH
Q 010264 187 LIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETNFL 252 (514)
Q Consensus 187 ~iew~~fv~il~lLl~slti~~l~~~~lwgl~LWkW~v~vlVl~~GrlVs~W~v~liv~lIernFl 252 (514)
..+|+..++++.+.++...+|-++. .....+|.-|+.++.++ |-+++.-++|+++|+|-..+.
T Consensus 117 ~~~~l~~~~~~~~ila~~lFPlWP~--~~r~gv~YlS~~~lgll-~~~~~laivRlilF~i~~~~~ 179 (232)
T TIGR00869 117 YMDYLIVILVVSIILALVLFPLWPR--FMRRGSWYLSLGALGII-GGFFAVAILRLILFVLTLIVV 179 (232)
T ss_pred HHHHHHHHHHHHHHHHHhhcccChH--HHhHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444554442 12446676555444443 344455678888888876664
No 37
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=25.35 E-value=25 Score=33.99 Aligned_cols=15 Identities=13% Similarity=0.485 Sum_probs=8.0
Q ss_pred CCCCCCCchhH--hhhh
Q 010264 157 MSSIASDDEEE--IYNK 171 (514)
Q Consensus 157 ~~~~~~ddde~--~~~~ 171 (514)
+|+++|||||| .|+.
T Consensus 142 ~pL~~ddedeD~TvFd~ 158 (163)
T PF06679_consen 142 APLEEDDEDEDSTVFDA 158 (163)
T ss_pred cccCCCccccccceeee
Confidence 45555555554 6653
No 38
>COG3336 Predicted membrane protein [Function unknown]
Probab=24.47 E-value=8.9e+02 Score=25.89 Aligned_cols=55 Identities=9% Similarity=0.107 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010264 266 KSVQVFIWLALVLVTWVLLFNHGVKRSEVATKVLHYITWTLVTFLIGAFLWLLKTLSLKI 325 (514)
Q Consensus 266 k~v~~flWl~lvLiaW~~Lf~~~v~rs~~t~~~l~~V~kvL~~llv~a~l~LlKklLVKl 325 (514)
+.+.++.-++..++.|-.++....+.. -+.+..|....+..+.+.-.+=++++..
T Consensus 159 H~lm~~~~f~~aylfww~mI~~dpg~r-----~ls~~~Rl~~l~~~~~~~~~~~~~im~s 213 (299)
T COG3336 159 HLLMNLLFFLSAYLFWWAMIGPDPGPR-----RLSYLMRLGYLFAAMPLHAFFGALIMFS 213 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCc-----cchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666777778888888888887632211 2356677776666666555555555543
No 39
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=24.13 E-value=26 Score=37.13 Aligned_cols=123 Identities=19% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhheec-cccCCceeehhhHHHHHHHHHHHHhhHHHHH----------HHHhhhhhhhhhhhHhhhhheee
Q 010264 192 AFLCNVGCLIVSLTV-NKWENFMIWGLEIWKWCVLVLVIFCGMLVTN----------WFMHVIVFVIETNFLLRKKVLYF 260 (514)
Q Consensus 192 ~fv~il~lLl~slti-~~l~~~~lwgl~LWkW~v~vlVl~~GrlVs~----------W~v~liv~lIernFll~kkVLYf 260 (514)
++++++|+|++-..| ..++....--+.-+. .+++.+++..++.-+ -+.-++++++....-+.-.+|+.
T Consensus 29 ~llll~ail~w~~iimsd~t~~a~~vl~sfA-vvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~ 107 (381)
T PF05297_consen 29 LLLLLVAILVWFFIIMSDLTQGALTVLYSFA-VVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFV 107 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHH-HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHH
Q ss_pred eechhhhHHHHHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010264 261 VHGLKKSVQVFIWLALVLVTWVLLFNHGVKRSEVATKVLHYITWTLVTFLIGAFLWLLKTLSLKI 325 (514)
Q Consensus 261 v~gLrk~v~~flWl~lvLiaW~~Lf~~~v~rs~~t~~~l~~V~kvL~~llv~a~l~LlKklLVKl 325 (514)
--+.+|+..++++..|..|.--+-..... ..+.-+-.+++++-+++.+-.+|=|.
T Consensus 108 -----Gi~~l~l~~lLaL~vW~Ym~lLr~~GAs~-----WtiLaFcLAF~LaivlLIIAv~L~qa 162 (381)
T PF05297_consen 108 -----GIVILFLCCLLALGVWFYMWLLRELGASF-----WTILAFCLAFLLAIVLLIIAVLLHQA 162 (381)
T ss_dssp -----------------------------------------------------------------
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
No 40
>PLN02953 phosphatidate cytidylyltransferase
Probab=24.07 E-value=9.2e+02 Score=26.80 Aligned_cols=44 Identities=14% Similarity=-0.048 Sum_probs=21.4
Q ss_pred CCCCchhHhhhhhhhHH--HhhccCCceehHHHHHHHHHHHHHHhhe
Q 010264 160 IASDDEEEIYNKVELIK--EKRKRMTPMDLIQWVAFLCNVGCLIVSL 204 (514)
Q Consensus 160 ~~~ddde~~~~~~~~~~--~~~~~~~~~i~iew~~fv~il~lLl~sl 204 (514)
++||+.||+.+-.++++ +|.++-+ ....|.++=+++++++++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~RIiSglvl~~l~l~vV 116 (403)
T PLN02953 71 GDDDHAKEIDRIHDLQNVEDKQKKAS-QLKKRVIFGIGIGLPVGCVV 116 (403)
T ss_pred cCCCccchhhhhcccccccccccccc-cHHHHHHHHHHHHHHHHhee
Confidence 44555555555555552 2212211 23466666666666655554
No 41
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=22.71 E-value=1e+02 Score=30.42 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=23.3
Q ss_pred HHHHHHHhheeccccCCceeehhhHHHHHHHHHHHHhhHHHHHHH
Q 010264 195 CNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNWF 239 (514)
Q Consensus 195 ~il~lLl~slti~~l~~~~lwgl~LWkW~v~vlVl~~GrlVs~W~ 239 (514)
+.+|+..|...+. -++.++|.--+|--..++..+++|.++..|+
T Consensus 121 Lal~~~~~iyfl~-~K~~~~~rA~~~~~~~L~~G~~lGs~l~~~l 164 (194)
T PF11833_consen 121 LALGLGACIYFLN-RKERKLGRAFLWTLGGLVVGLILGSLLASWL 164 (194)
T ss_pred HHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444333 2566666666665444555555565555554
No 42
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=22.60 E-value=60 Score=36.17 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=29.9
Q ss_pred eeehhhHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhh
Q 010264 213 MIWGLEIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETN 250 (514)
Q Consensus 213 ~lwgl~LWkW~v~vlVl~~GrlVs~W~v~liv~lIern 250 (514)
.+|+.+-=+-.++-.+++||++++.|+..++.--+-|.
T Consensus 106 ~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr 143 (528)
T KOG0253|consen 106 EVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRR 143 (528)
T ss_pred hhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcc
Confidence 45778777778899999999999999987766555443
No 43
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=21.60 E-value=32 Score=31.24 Aligned_cols=9 Identities=22% Similarity=1.136 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 010264 221 KWCVLVLVI 229 (514)
Q Consensus 221 kW~v~vlVl 229 (514)
||.+|++++
T Consensus 1 RW~l~~iii 9 (130)
T PF12273_consen 1 RWVLFAIII 9 (130)
T ss_pred CeeeHHHHH
Confidence 465544444
No 44
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=21.54 E-value=1.2e+02 Score=32.29 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=37.2
Q ss_pred heeccccCCceeehhhHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhhh
Q 010264 203 SLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETNF 251 (514)
Q Consensus 203 slti~~l~~~~lwgl~LWkW~v~vlVl~~GrlVs~W~v~liv~lIernF 251 (514)
..++.+-+|.+=++..++ |.++-++...|.++..|.+++++.++--.-
T Consensus 17 ~~~~~Dk~np~R~gt~lF-W~llg~~F~~G~~lp~~~~G~lvl~m~~la 64 (308)
T PF06166_consen 17 VRSLRDKTNPKRIGTALF-WGLLGLIFIFGDYLPPFVVGILVLVMALLA 64 (308)
T ss_pred HHHHcCCCCCcccchHHH-HHHHHHHHHcCccchhHHHHHHHHHHHHHH
Confidence 334455556778888888 799999999999999999998887765433
No 45
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=21.35 E-value=1.4e+02 Score=30.33 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=12.8
Q ss_pred hHHHHHHHHhhhhhhhhhhhH
Q 010264 232 GMLVTNWFMHVIVFVIETNFL 252 (514)
Q Consensus 232 GrlVs~W~v~liv~lIernFl 252 (514)
|-+++.-++|+++|++-+.+.
T Consensus 151 ~~~~~laivRlilf~i~w~~~ 171 (224)
T PF03839_consen 151 GLFFALAIVRLILFLITWFFT 171 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444567777777766665
No 46
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.23 E-value=1.6e+02 Score=31.22 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=30.1
Q ss_pred CCceehHHHHHHHHHHHHHHhheeccccCCceeehhhHHHHHHHHHHHHhhHH
Q 010264 182 MTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGML 234 (514)
Q Consensus 182 ~~~~i~iew~~fv~il~lLl~slti~~l~~~~lwgl~LWkW~v~vlVl~~Grl 234 (514)
.-.|.+.-..+|+-++|||.+- | .-.+.+.|+|.+.+ +++-+.|+++
T Consensus 135 yylwm~~~~tL~~Niia~la~~--i-~g~~~~~f~Laii~---fllftPcsyV 181 (313)
T KOG3088|consen 135 YYLWMGLVLTLLWNIIACLAWW--I-KGGGGTIFGLAIIW---FLLFTPCSYV 181 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--H-cCCCchhhHHHHHH---HHHhCCceee
Confidence 3455555666677788888865 2 34577788888874 2345566654
No 47
>KOG3402 consensus Predicted membrane protein [Function unknown]
Probab=20.90 E-value=4.9e+02 Score=23.38 Aligned_cols=54 Identities=13% Similarity=0.373 Sum_probs=36.9
Q ss_pred eeeechhhhHHHHHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHHHHH
Q 010264 259 YFVHGLKKSVQVFIWLALVLVTWVLLFNHGVKRSEVATKVLHYITWTLVTFLIGAFLW 316 (514)
Q Consensus 259 Yfv~gLrk~v~~flWl~lvLiaW~~Lf~~~v~rs~~t~~~l~~V~kvL~~llv~a~l~ 316 (514)
||+.|. ++.-++|++=.+-.|...|..... ...+++-+||.+-.+++....+++
T Consensus 18 yyl~Gf--afLP~lW~VN~FwFf~~af~~pa~--~~r~QIr~YVvrSavGf~fw~ivL 71 (101)
T KOG3402|consen 18 YYLFGF--AFLPWLWFVNCFWFFPVAFHSPAF--PHRRQIRNYVVRSAVGFSFWTIVL 71 (101)
T ss_pred HHHhhH--HHHHHHHHHHHHHHhHHHHcCccc--chHHHHHHHHHHHHHHHHHHHHHH
Confidence 555553 667788998888888888876432 123567788888887776654443
No 48
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=20.65 E-value=2.9e+02 Score=33.34 Aligned_cols=11 Identities=27% Similarity=0.443 Sum_probs=4.3
Q ss_pred CCCCCCCCCCC
Q 010264 104 RFGEPSYNDPN 114 (514)
Q Consensus 104 r~~e~~~p~~~ 114 (514)
+-|-||.||+.
T Consensus 591 ~~Gg~ppPP~~ 601 (1102)
T KOG1924|consen 591 FLGGPPPPPPP 601 (1102)
T ss_pred CCCCCCCCCCC
Confidence 33444443333
No 49
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=20.52 E-value=1.5e+02 Score=36.41 Aligned_cols=22 Identities=18% Similarity=0.481 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh
Q 010264 265 KKSVQVFIWLALVLVTWVLLFN 286 (514)
Q Consensus 265 rk~v~~flWl~lvLiaW~~Lf~ 286 (514)
|.|...++|+++..+.+..|.-
T Consensus 1002 r~P~~v~v~s~lla~~~~ll~v 1023 (1044)
T PLN02915 1002 RTPTIVVLWSILLASIFSLVWV 1023 (1044)
T ss_pred CCCeeehHHHHHHHHHHHHHHh
Confidence 5688888998887777766643
No 50
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=20.49 E-value=9.5e+02 Score=29.26 Aligned_cols=51 Identities=10% Similarity=0.276 Sum_probs=27.0
Q ss_pred HHHhhccCCceehHHHHHHHHHHHHHHhheeccccCCceeehhhHHHHHHHHHHHHhhHH
Q 010264 175 IKEKRKRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGML 234 (514)
Q Consensus 175 ~~~~~~~~~~~i~iew~~fv~il~lLl~slti~~l~~~~lwgl~LWkW~v~vlVl~~Grl 234 (514)
+++++..+++.-++||+++.. |+..|- +... -...=|.|.+-+.+++.||.
T Consensus 586 qqk~~Y~~~i~Nimew~iyts--~li~v~---~~~~----~~~~~~Q~~laa~aV~l~W~ 636 (929)
T KOG0510|consen 586 QQKRHYFMDIENIMEWFIYTS--ALITVY---PLFF----EITAHLQWVLAAFAVLLGWM 636 (929)
T ss_pred HHHHHHHhhhHHHHHHHHHhh--hhheee---hhhh----hhHHHHHHHHHHHHHHHHHH
Confidence 355577788888888875543 222211 1111 11133667666666666653
No 51
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=20.41 E-value=9.1e+02 Score=24.50 Aligned_cols=17 Identities=24% Similarity=0.428 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhc
Q 010264 271 FIWLALVLVTWVLLFNH 287 (514)
Q Consensus 271 flWl~lvLiaW~~Lf~~ 287 (514)
.+|.++.-+.|.+++..
T Consensus 82 glwy~~lsl~~~~l~p~ 98 (284)
T PF12805_consen 82 GLWYLLLSLLWWPLRPY 98 (284)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 46666666666666654
No 52
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=20.15 E-value=1.5e+02 Score=36.37 Aligned_cols=47 Identities=15% Similarity=0.318 Sum_probs=27.7
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHhhhhheeeeechhhhHHHHHHHHHHHHHHHHHHh
Q 010264 231 CGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLLFN 286 (514)
Q Consensus 231 ~GrlVs~W~v~liv~lIernFll~kkVLYfv~gLrk~v~~flWl~lvLiaW~~Lf~ 286 (514)
.+.+.+.|++-++.-|++-.| +|+ =|.|...++|+++..+++..|.-
T Consensus 1012 ~~~~~~~wvv~~l~Pf~kgl~-gR~--------~r~P~~v~v~s~ll~~~~~l~~v 1058 (1079)
T PLN02638 1012 GKLFFAFWVIVHLYPFLKGLM-GRQ--------NRTPTIVVVWSILLASIFSLLWV 1058 (1079)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccC--------CCCCeeehHHHHHHHHHHHHHHh
Confidence 344455555555544444333 233 15688888898887777776643
No 53
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=20.14 E-value=1.3e+03 Score=26.36 Aligned_cols=9 Identities=22% Similarity=0.888 Sum_probs=4.8
Q ss_pred HHHHHHHHH
Q 010264 268 VQVFIWLAL 276 (514)
Q Consensus 268 v~~flWl~l 276 (514)
+..++|+++
T Consensus 121 ~~~~~~~l~ 129 (558)
T PRK11560 121 LHFILWLVA 129 (558)
T ss_pred HHHHHHHHH
Confidence 345566554
Done!