Query 010264
Match_columns 514
No_of_seqs 164 out of 202
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 03:00:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010264.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010264hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vv5_A MSCS, small-conductance 99.0 2.3E-10 7.9E-15 113.9 6.2 77 432-508 128-204 (286)
2 3udc_A Small-conductance mecha 98.6 1.2E-07 4E-12 94.2 8.6 72 432-506 127-198 (285)
3 3kp9_A Vkorc1/thioredoxin doma 16.7 7.5E+02 0.026 24.3 10.2 31 218-248 97-127 (291)
4 3udc_A Small-conductance mecha 16.4 6.5E+02 0.022 24.2 9.6 20 263-282 67-86 (285)
5 3org_A CMCLC; transporter, tra 13.9 1.2E+02 0.004 32.9 3.8 20 185-204 5-24 (632)
6 1q0v_A Hydrophilic protein; ha 13.5 1.4E+02 0.0049 24.7 3.4 9 122-130 21-29 (81)
7 3qf4_B Uncharacterized ABC tra 12.0 1E+03 0.034 25.3 10.4 24 219-242 76-99 (598)
8 4f4c_A Multidrug resistance pr 11.3 1.1E+03 0.036 28.0 11.1 23 219-241 135-157 (1321)
9 2vv5_A MSCS, small-conductance 10.4 6.6E+02 0.023 24.2 7.7 56 223-282 32-87 (286)
10 1nei_A Hypothetical protein YO 10.2 92 0.0031 24.5 1.1 30 388-417 15-48 (60)
No 1
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=99.01 E-value=2.3e-10 Score=113.88 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=73.0
Q ss_pred CCCCccCeeEeccceeEEeeeeeeeeEEEeecCeEEEeeccccccccccceecCCCCcccEEEEEEecCCHHHHHHH
Q 010264 432 NEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVEFSIAFVTPVERIAML 508 (514)
Q Consensus 432 ~~~d~gD~~i~~e~e~vVeem~lL~TvF~r~dg~~v~~PNsvL~tk~I~N~~RS~~m~e~~~~~V~~~Tp~eki~~L 508 (514)
+||.+||++.+++.+-.|+||++.+|.++.+||+.+++||+.+.+.+|.|++|++.+...+++.|+++|+.+++.++
T Consensus 128 ~pf~vGD~I~i~g~~G~V~~I~l~~T~i~t~dg~~v~IPNs~l~~~~i~N~s~~~~~r~~~~v~v~y~~d~~~v~~~ 204 (286)
T 2vv5_A 128 RPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQI 204 (286)
T ss_dssp CSSCTTCEEESSSCEEEEEEECSSEEEEECTTSCEEEEEHHHHHTSCEEESSSSSEEEEEEEEEECTTSCHHHHHHH
T ss_pred CCccCCCEEEECCEEEEEEEEEeEEEEEEeCCCCEEEechHHHhhCceEECCCCCcEEEEEEEEEcCCCCHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999998888899999999999997654
No 2
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=98.56 E-value=1.2e-07 Score=94.24 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=65.4
Q ss_pred CCCCccCeeEeccceeEEeeeeeeeeEEEeecCeEEEeeccccccccccceecCCCCcccEEEEEEecCCHHHHH
Q 010264 432 NEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVEFSIAFVTPVERIA 506 (514)
Q Consensus 432 ~~~d~gD~~i~~e~e~vVeem~lL~TvF~r~dg~~v~~PNsvL~tk~I~N~~RS~~m~e~~~~~V~~~Tp~eki~ 506 (514)
.||.+||++.+++.+-.|+||++.+|..+.+||..+++||+.++ .|.|++|+. +...+++.|+++++.++..
T Consensus 127 ~pf~vGD~I~i~~~~G~V~~I~l~~T~i~t~d~~~v~iPN~~l~--~i~N~s~~~-~~~~~~v~v~~~~d~~~v~ 198 (285)
T 3udc_A 127 DQFSVGDYVTINGISGTVEEIGLRVTKIRGFSDGLHIIPNGEIK--MVTNLTKDS-MMAVVNIAFPIDEDVDKII 198 (285)
T ss_dssp TSCCTTCEEEETTEEEEEEEECSSEEEEEETTTEEEEEEGGGCS--CEEECSSSC-EEEEEEEEEETTSCHHHHH
T ss_pred CCccCCCEEEECCEEEEEEEeeeeEEEEecCCCCEEEecccccc--cccccCCCC-ceEEEEEeeecCCCHHHHH
Confidence 49999999999999999999999999999999999999999994 599999976 5556999999999999854
No 3
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=16.68 E-value=7.5e+02 Score=24.30 Aligned_cols=31 Identities=16% Similarity=0.431 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHhhhhhhhh
Q 010264 218 EIWKWCVLVLVIFCGMLVTNWFMHVIVFVIE 248 (514)
Q Consensus 218 ~LWkW~v~vlVl~~GrlVs~W~v~liv~lIe 248 (514)
+-|.|..+.....+|-..+.|++.+..+.|.
T Consensus 97 ~~~~~~~l~~~~~~~~~fs~yL~y~~~~vi~ 127 (291)
T 3kp9_A 97 KRWRWPALFGLVSAMTAFEMYMLYLMVAVLR 127 (291)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3355545555566677777788777766653
No 4
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=16.36 E-value=6.5e+02 Score=24.19 Aligned_cols=20 Identities=15% Similarity=0.059 Sum_probs=12.7
Q ss_pred chhhhHHHHHHHHHHHHHHH
Q 010264 263 GLKKSVQVFIWLALVLVTWV 282 (514)
Q Consensus 263 gLrk~v~~flWl~lvLiaW~ 282 (514)
-+++.+..++|.++++++..
T Consensus 67 ~~~~~~~~~i~~~~~~~~l~ 86 (285)
T 3udc_A 67 LTKNAVRYIIYFLAGASILK 86 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566667777776666554
No 5
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=13.91 E-value=1.2e+02 Score=32.93 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=15.2
Q ss_pred eehHHHHHHHHHHHHHHhhe
Q 010264 185 MDLIQWVAFLCNVGCLIVSL 204 (514)
Q Consensus 185 ~i~iew~~fv~il~lLl~sl 204 (514)
..+.+|++|.+++|++.+..
T Consensus 5 ~~~~r~~~~~~lvGi~~gl~ 24 (632)
T 3org_A 5 MYLLRLVCFLTLLGVTAALF 24 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45678999998888876544
No 6
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=13.54 E-value=1.4e+02 Score=24.73 Aligned_cols=9 Identities=22% Similarity=0.206 Sum_probs=5.2
Q ss_pred hhhhhhccC
Q 010264 122 SALSEQLGG 130 (514)
Q Consensus 122 ~~~~~~~~~ 130 (514)
..|+|..+.
T Consensus 21 LSL~Es~~~ 29 (81)
T 1q0v_A 21 LSLKESRNS 29 (81)
T ss_dssp HHHHCCCCC
T ss_pred HhHHHHcCC
Confidence 456676555
No 7
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=11.96 E-value=1e+03 Score=25.26 Aligned_cols=24 Identities=8% Similarity=0.247 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhh
Q 010264 219 IWKWCVLVLVIFCGMLVTNWFMHV 242 (514)
Q Consensus 219 LWkW~v~vlVl~~GrlVs~W~v~l 242 (514)
++.|++++.++++...+..|+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~ 99 (598)
T 3qf4_B 76 LPRYMLILGTIYALTSLLFWLQGK 99 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666555555555555555333
No 8
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=11.31 E-value=1.1e+03 Score=27.99 Aligned_cols=23 Identities=9% Similarity=0.013 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHh
Q 010264 219 IWKWCVLVLVIFCGMLVTNWFMH 241 (514)
Q Consensus 219 LWkW~v~vlVl~~GrlVs~W~v~ 241 (514)
+.+.++....+.+|.++..|+-.
T Consensus 135 ~~~~~~~~~~l~i~~~~~~~~~~ 157 (1321)
T 4f4c_A 135 VMNVVWSYAAMTVGMWAAGQITV 157 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555566666665533
No 9
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=10.36 E-value=6.6e+02 Score=24.17 Aligned_cols=56 Identities=13% Similarity=0.113 Sum_probs=28.4
Q ss_pred HHHHHHHHhhHHHHHHHHhhhhhhhhhhhHhhhhheeeeechhhhHHHHHHHHHHHHHHH
Q 010264 223 CVLVLVIFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALVLVTWV 282 (514)
Q Consensus 223 ~v~vlVl~~GrlVs~W~v~liv~lIernFll~kkVLYfv~gLrk~v~~flWl~lvLiaW~ 282 (514)
...+++++.|++++.|+.+++-.++++ ++..-....-+++-+..++|.++++++..
T Consensus 32 ~~~~~i~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~i~~i~~~~~l~ 87 (286)
T 2vv5_A 32 VAALAIIIVGLIIARMISNAVNRLMIS----RKIDATVADFLSALVRYGIIAFTLIAALG 87 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666676666665554443332 11111122335566666777766665543
No 10
>1nei_A Hypothetical protein YOAG; alpha/beta protein, homodimer, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Escherichia coli} SCOP: d.253.1.1
Probab=10.23 E-value=92 Score=24.49 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=22.4
Q ss_pred cccchhh----hhhccccccchHHHHHHHHHHhc
Q 010264 388 KIIDMGK----VHKMKQEKVSTWTMKLLVDAIMN 417 (514)
Q Consensus 388 ~~i~~~~----l~kl~~~~vSaW~mkrL~~~Vr~ 417 (514)
.++++|+ +-.|.-..++|=.+|.|+++||.
T Consensus 15 nGVSVdk~~~~~~el~~p~~aa~~vK~LvniVrg 48 (60)
T 1nei_A 15 NGVSVDYETETPMTLLVPEVAAEVIKDLVNTVRS 48 (60)
T ss_dssp TCCEEEEECCCSGGGTCHHHHHHHHHHHHHHHHH
T ss_pred CceEeecccCChHHhcCcHHHHHHHHHHHHHHhc
Confidence 3455554 45566777889999999999995
Done!