BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010265
(514 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1
Length = 809
Score = 296 bits (759), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 149/333 (44%), Positives = 205/333 (61%), Gaps = 16/333 (4%)
Query: 2 SVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGV 61
S L ++DE ++ SLNGCRV DQILKLVPN+ +F LRC+K WA RRG+YSN+ GFLGGV
Sbjct: 222 SFLKNIDEKSILSLNGCRVTDQILKLVPNIPNFRMALRCIKLWAIRRGIYSNILGFLGGV 281
Query: 62 NWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAE-LGFSVWDPRKNR 120
+WALL AR+CQLYPN+ PS ++ RFF+VY +W+WP P++LC I E LG VW+P +
Sbjct: 282 SWALLTARICQLYPNSAPSTIIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNP---K 338
Query: 121 RDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYL 180
RDK H MPIITPAYP MNS+YNVS STL++M +F G I ++E + W L E
Sbjct: 339 RDKAHLMPIITPAYPSMNSTYNVSKSTLQLMKSEFVRGAEITRKIETGECTWKNLLEKCD 398
Query: 181 FFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVD-- 238
FF Y Y+++D + N +D W+GW+ES+LR L +E K PYP + +
Sbjct: 399 FFTRYSFYIEIDCYSMNEEDSRKWEGWIESKLRFLISNLESTPKMKFAV-PYPKGFTNNL 457
Query: 239 --TSKPCAHC-AFFMGLQRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPG---MEIC 292
+ P C +FFMGL + D+ +V EF I ++ +P M+I
Sbjct: 458 HKANNPDQICTSFFMGLSFNFSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMDIK 517
Query: 293 VSHIRRKQIPPYVFPEGYKRTRHPRLASQQRSS 325
V +I++KQ+P +V EG P +++RSS
Sbjct: 518 VQYIKKKQLPAFVKDEG---PEEPVKTTKKRSS 547
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2
Length = 736
Score = 277 bits (708), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 143/331 (43%), Positives = 200/331 (60%), Gaps = 8/331 (2%)
Query: 2 SVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGV 61
S L +D +RSLNGCRV D+IL LVPN E F TLR +K WAKRRG+YSN+ GFLGGV
Sbjct: 187 SRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGV 246
Query: 62 NWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRR 121
+WA+LVAR CQLYPNA S LV +FF V++ W WPNPV+L +E+ L VWDPR N
Sbjct: 247 SWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPS 306
Query: 122 DKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLF 181
D+ H MPIITPAYP NS+YNVSTST VM+++F+ G + +E+ K+ WS L EP F
Sbjct: 307 DRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNF 366
Query: 182 FESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSK 241
F+ YR+Y+ + A+ ++ L W G VES++R L +ER+ + L H P + +
Sbjct: 367 FQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITL-AHVNPQSFPGNKE 425
Query: 242 PCAHCAF----FMGL---QRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVS 294
+ F+G+ + + E V +DI+ + N K GM+I +
Sbjct: 426 HHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKIEAT 485
Query: 295 HIRRKQIPPYVFPEGYKRTRHPRLASQQRSS 325
H+++KQ+ Y+ E ++ + L+ RSS
Sbjct: 486 HVKKKQLHHYLPAEILQKKKKQSLSDVNRSS 516
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1
Length = 739
Score = 273 bits (699), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 145/333 (43%), Positives = 201/333 (60%), Gaps = 13/333 (3%)
Query: 2 SVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGV 61
S L +D +RSLNGCRV D+IL LVPN E F TLR +K WAKRRG+YSN+ GFLGGV
Sbjct: 187 SRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGV 246
Query: 62 NWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRR 121
+WA+LVAR CQLYPNA S LV +FF V++ W WPNPV+L +E+ L VWDPR N
Sbjct: 247 SWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPS 306
Query: 122 DKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLF 181
D+ H MPIITPAYP NS+YNVSTST VM+++F+ G + +E+ K+ WS L EP F
Sbjct: 307 DRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNF 366
Query: 182 FESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSK 241
F+ YR+Y+ + A+ ++ L W G VES++R L +ER+ + L H P + +
Sbjct: 367 FQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITL-AHVNPQSFPGNKE 425
Query: 242 PCAHCA------FFMGL---QRKPGEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEIC 292
H A +F+G+ + + E V +DI+ + N K GM+I
Sbjct: 426 --HHKANNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKDGMKIE 483
Query: 293 VSHIRRKQIPPYVFPEGYKRTRHPRLASQQRSS 325
+H+++KQ+ Y+ P + + L+ RSS
Sbjct: 484 ATHVKKKQLHHYL-PAEILQKKKKSLSDVSRSS 515
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4
Length = 739
Score = 271 bits (693), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 143/324 (44%), Positives = 197/324 (60%), Gaps = 21/324 (6%)
Query: 6 DVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWAL 65
++D +RSLNGCRV D+IL LVPN+++F TLR +K WAKR +YSN+ GFLGGV+WA+
Sbjct: 192 NLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAM 251
Query: 66 LVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTH 125
LVAR CQLYPNA+ S LV +FF V++ W WPNPV+L +E L VWDPR N D+ H
Sbjct: 252 LVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYH 311
Query: 126 HMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESY 185
MPIITPAYP NS+YNVS ST VM+++F+ G I +E+ L+KA+WS LFE FF+ Y
Sbjct: 312 LMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKY 371
Query: 186 RNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDTS 240
++Y+ + A L W G VES++R L +E++ + L Q P P E D
Sbjct: 372 KHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKESPDRE 431
Query: 241 KPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEF-----KLSINMYMFWKPGMEICVSH 295
+ + +GL K E E D+ ++ F + +IN MF + M+I H
Sbjct: 432 E--FRTMWVIGLVFKKTE-NSENLSVDLTYDIQSFTDTVYRQAINSKMF-ELDMKIAAMH 487
Query: 296 IRRKQ----IPPYVFPEGYKRTRH 315
++RKQ +P +V KR +H
Sbjct: 488 VKRKQLHQLLPSHVL---QKRKKH 508
>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4
Length = 745
Score = 270 bits (690), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 139/306 (45%), Positives = 190/306 (62%), Gaps = 14/306 (4%)
Query: 6 DVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWAL 65
++D +RSLNGCRV D+IL LVPN+++F TLR +K WAKR +YSN+ GFLGGV+WA+
Sbjct: 192 NLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAM 251
Query: 66 LVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTH 125
LVAR CQLYPNA+ S LV +FF V++ W WPNPV+L +E L VWDPR N D+ H
Sbjct: 252 LVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYH 311
Query: 126 HMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESY 185
MPIITPAYP NS+YNVS ST VM+++F+ G I +E+ L+KA+WS LFE FF+ Y
Sbjct: 312 LMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKY 371
Query: 186 RNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDTS 240
++Y+ + A L W G VES++R L +E++ + L Q P P E D
Sbjct: 372 KHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPD-- 429
Query: 241 KPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEF-----KLSINMYMFWKPGMEICVSH 295
K + +GL K E E D+ ++ F + +IN MF + M+I H
Sbjct: 430 KEEFRTMWVIGLVFKKTE-NSENLSVDLTYDIQSFTDTVYRQAINSKMF-EVDMKIAAMH 487
Query: 296 IRRKQI 301
++RKQ+
Sbjct: 488 VKRKQL 493
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3
Length = 739
Score = 270 bits (690), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 139/306 (45%), Positives = 190/306 (62%), Gaps = 14/306 (4%)
Query: 6 DVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWAL 65
++D +RSLNGCRV D+IL LVPN+++F TLR +K WAKR +YSN+ GFLGGV+WA+
Sbjct: 192 NLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAM 251
Query: 66 LVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTH 125
LVAR CQLYPNA+ S LV +FF V++ W WPNPV+L +E L VWDPR N D+ H
Sbjct: 252 LVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYH 311
Query: 126 HMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESY 185
MPIITPAYP NS+YNVS ST VM+++F+ G I +E+ L+KA+WS LFE FF+ Y
Sbjct: 312 LMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKY 371
Query: 186 RNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDTS 240
++Y+ + A L W G VES++R L +E++ + L Q P P E D
Sbjct: 372 KHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPD-- 429
Query: 241 KPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEF-----KLSINMYMFWKPGMEICVSH 295
K + +GL K E E D+ ++ F + +IN MF + M+I H
Sbjct: 430 KEEFRTMWVIGLVFKKTE-NSENLSVDLTYDIQSFTDTVYRQAINSKMF-EVDMKIAAMH 487
Query: 296 IRRKQI 301
++RKQ+
Sbjct: 488 VKRKQL 493
>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1
Length = 636
Score = 269 bits (688), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 138/304 (45%), Positives = 193/304 (63%), Gaps = 10/304 (3%)
Query: 6 DVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWAL 65
++D +RSLNGCRV D+IL LVPN+++F TLR +K WAK +YSN+ GFLGGV+WA+
Sbjct: 192 NLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAM 251
Query: 66 LVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTH 125
LVAR CQLYPNAV S LV +FF V++ W WPNPV+L +E L VWDPR N D+ H
Sbjct: 252 LVARTCQLYPNAVASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYH 311
Query: 126 HMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESY 185
MPIITPAYP NS+YNVS ST VM+++F+ G I E+ L+KA+WS LFE FF+ Y
Sbjct: 312 LMPIITPAYPQQNSTYNVSISTRMVMIEEFKQGLAITHEILLSKAEWSKLFEAPSFFQKY 371
Query: 186 RNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDTS 240
++Y+ + A+ L W G VES++R L +E++ + L Q P P E D
Sbjct: 372 KHYIVLLASASTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDME 431
Query: 241 KPCAHCAFFMGLQRKP--GEVVQEGQQFDIRGSVEE-FKLSINMYMFWKPGMEICVSHIR 297
+ +GL +KP E++ +DI+ + ++ ++N MF + GM+I H+R
Sbjct: 432 EFRTMWVIGLGL-KKPDNSEILSIDLTYDIQSFTDTVYRQAVNSKMF-EMGMKITAMHLR 489
Query: 298 RKQI 301
RK++
Sbjct: 490 RKEL 493
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2
Length = 641
Score = 268 bits (684), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 139/305 (45%), Positives = 191/305 (62%), Gaps = 12/305 (3%)
Query: 6 DVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWAL 65
++D +RSLNGCRV D+IL LVPN++ F TLR +K WAK +YSN+ GFLGGV+WA+
Sbjct: 192 NLDIRCIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAM 251
Query: 66 LVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTH 125
LVAR CQLYPNA+ S LV +FF V++ W WPNPV+L +E L VWDPR N D+ H
Sbjct: 252 LVARTCQLYPNAIASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYH 311
Query: 126 HMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESY 185
MPIITPAYP NS+YNVS ST VM+++F+ G I E+ LNKA+WS LFE FF+ Y
Sbjct: 312 LMPIITPAYPQQNSTYNVSVSTRMVMIEEFKQGLAITHEILLNKAEWSKLFEAPSFFQKY 371
Query: 186 RNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDTS 240
++Y+ + A L W G VES++R L +E++ + L Q P P E D
Sbjct: 372 KHYIVLLASAPTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKETAD-- 429
Query: 241 KPCAHCAFFMGL-QRKP--GEVVQEGQQFDIRGSVEE-FKLSINMYMFWKPGMEICVSHI 296
K + +GL +KP E++ +DI+ + ++ +IN MF + M+I H+
Sbjct: 430 KEEFRTMWVIGLVLKKPENSEILSIDLTYDIQSFTDTVYRQAINSKMF-EMDMKIAAMHL 488
Query: 297 RRKQI 301
RRK++
Sbjct: 489 RRKEL 493
>sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a
PE=2 SV=1
Length = 715
Score = 268 bits (684), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 196/322 (60%), Gaps = 18/322 (5%)
Query: 6 DVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWAL 65
++D +RSLNGCRV D+IL LVPN++ F TLR +K WAKR +YSN+ GFLGGV+WA+
Sbjct: 174 NLDIRCIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAM 233
Query: 66 LVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTH 125
LVAR CQLYPNA+ S LV +FF V++ W WPNPV+L +E L VWDPR N D+ H
Sbjct: 234 LVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYH 293
Query: 126 HMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESY 185
MPIITPAYP NS+YNVS ST VM+++F+ G I +E+ L KA+WS LF+ FF+ Y
Sbjct: 294 LMPIITPAYPQQNSTYNVSVSTRAVMIEEFKQGLAITDEILLGKAEWSKLFDAPNFFQKY 353
Query: 186 RNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDTS 240
++Y+ + A L W G VES++R L +E++ + L + P P E ++
Sbjct: 354 KHYILLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPRSFPAPSENME-- 411
Query: 241 KPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEF-----KLSINMYMFWKPGMEICVSH 295
K + +GL K E E D+ ++ F + +IN MF + M+I H
Sbjct: 412 KEEFRTMWVIGLVFKKME-NSENLSVDLTYDIQSFTDTVDRQAINSKMF-ETEMKIAAMH 469
Query: 296 IRRKQI----PPYVFPEGYKRT 313
++RKQ+ P +V P+ K +
Sbjct: 470 VKRKQLHQLQPSHVSPKKKKHS 491
>sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1
Length = 558
Score = 239 bits (610), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 113/241 (46%), Positives = 162/241 (67%), Gaps = 6/241 (2%)
Query: 2 SVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGV 61
++L ++DE +RSLNG RV D+IL+LVP F LRC+K WA++R VY N+ GF GGV
Sbjct: 174 NLLKNLDEKDLRSLNGTRVTDEILQLVPKPTVFKHALRCIKLWAQQRAVYGNIFGFPGGV 233
Query: 62 NWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRR 121
WA+LVAR+CQLYPNAV S +V +FF +YT W WP PV+L +I++ L VW+PR
Sbjct: 234 AWAMLVARICQLYPNAVSSAIVEKFFNIYTKWNWPEPVLLKSIEDGPLQVRVWNPRLYPH 293
Query: 122 DKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLF 181
D+ H MP+ITPAYP M +++N+++ST +V++ + G++I +E+ K WS LFE + F
Sbjct: 294 DRLHRMPVITPAYPSMCATHNITSSTQKVILAELSRGSSIMQEIHAGKKTWSDLFEKHSF 353
Query: 182 FESYRNYLQVDIVAA---NADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVD 238
F Y+ YL V VAA +A++ W G++ES+LRQL L +E G HPY ++ +
Sbjct: 354 FYKYKFYLCV--VAASIDSAEEHKKWSGFIESKLRQLVLKLEV-AEGVEIAHPYVKDFSN 410
Query: 239 T 239
T
Sbjct: 411 T 411
>sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pla1 PE=2 SV=1
Length = 566
Score = 230 bits (586), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 149/231 (64%), Gaps = 1/231 (0%)
Query: 2 SVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGV 61
++L V+E V SLNG RV DQIL+LVPN F LR +KFWA+RR +Y+NV GF GGV
Sbjct: 174 NLLKGVEERCVLSLNGTRVTDQILQLVPNRAVFKHALRAIKFWAQRRAIYANVVGFPGGV 233
Query: 62 NWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRR 121
WA++VAR+CQLYPNAV S++V++FFR+ W WP P++L I++ L +W+P+
Sbjct: 234 AWAMMVARICQLYPNAVSSVIVAKFFRILHQWNWPQPILLKPIEDGPLQVRIWNPKLYPS 293
Query: 122 DKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLF 181
DK H MPIITPAYP M +++N++ ST +++ + I +++ + WSALF+ + F
Sbjct: 294 DKAHRMPIITPAYPSMCATHNITLSTQTIILREMVRAGEIADQIMVKALPWSALFQKHDF 353
Query: 182 FESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPY 232
F Y++YL + A A+ L W G VES+LR L +E L HP+
Sbjct: 354 FHRYKHYLTITAAAKTAEAQLKWAGLVESKLRHLVTRLELVDAIAL-AHPF 403
>sp|P51006|PAPO3_XENLA Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1
Length = 400
Score = 228 bits (582), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 106/193 (54%), Positives = 139/193 (72%), Gaps = 1/193 (0%)
Query: 6 DVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWAL 65
++D +RSLNGCRV D+IL LVPN++ F TLR +K WAKR +YSN+ GFLGGV+WA+
Sbjct: 189 NLDIRCIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAM 248
Query: 66 LVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTH 125
LVAR CQLYPNA+ S LV +FF V++ W WPNPV+L +E L VWDPR N D+ H
Sbjct: 249 LVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYH 308
Query: 126 HMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESY 185
MPIITPAYP NS+YNVS ST VM+++F+ G I +E+ L KA+WS LF+ FF+ Y
Sbjct: 309 LMPIITPAYPQQNSTYNVSVSTRAVMVEEFKQGLAITDEILLLKAEWSKLFDAPNFFQKY 368
Query: 186 RNYLQVDIVAANA 198
+ Y+ +++A A
Sbjct: 369 K-YVFYNLLAMFA 380
>sp|Q9UW26|PAPA_CANAL Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=PAPA PE=3 SV=1
Length = 555
Score = 221 bits (564), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 106/234 (45%), Positives = 152/234 (64%), Gaps = 6/234 (2%)
Query: 2 SVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGV 61
++L ++DE +R+LNG RV D+IL+LVP F LRC+K WA++R VY N+ GF GGV
Sbjct: 174 NLLKNIDEKDLRALNGTRVTDEILQLVPKPTVFKHALRCIKMWAQQRAVYGNIFGFPGGV 233
Query: 62 NWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRR 121
WA+LVAR+CQLYPNAV +++V +FF +Y+ W WP PV+L I++ L VW+PR
Sbjct: 234 AWAMLVARICQLYPNAVSAVIVEKFFHIYSQWAWPQPVLLKQIEDGPLQVRVWNPRLYAL 293
Query: 122 DKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLF 181
D+ H MP+ITPAYP M +++N+++ST +V++ +FQ G + ++ + K WS L E + F
Sbjct: 294 DRQHRMPVITPAYPSMCATHNITSSTQKVILSEFQRGIELMNDINVGKKSWSDLLERHDF 353
Query: 182 FESYRNYLQVDIVAANAD---DLLAWKGWVESRLRQLTLMIERDTYGKLQCHPY 232
F Y+ YL IVAA + L + G VES+LR L +E G HPY
Sbjct: 354 FFRYKFYLC--IVAATRSTYAEHLKYSGMVESKLRLLVQKLEL-VEGIELAHPY 404
>sp|P29468|PAP_YEAST Poly(A) polymerase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=PAP1 PE=1 SV=1
Length = 568
Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/236 (42%), Positives = 154/236 (65%), Gaps = 2/236 (0%)
Query: 2 SVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGV 61
++L ++DE +R+LNG RV D+IL+LVP F LR +K WA+RR VY+N+ GF GGV
Sbjct: 175 NLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGV 234
Query: 62 NWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRR 121
WA+LVAR+CQLYPNA +++++RFF + + W WP PV+L I++ L VW+P+ +
Sbjct: 235 AWAMLVARICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQ 294
Query: 122 DKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLF 181
D++H MP+ITPAYP M +++N++ ST +V++ +F G I ++ NK W+ LFE F
Sbjct: 295 DRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFEKNDF 354
Query: 182 FESYRNYLQVDIVAANADDL-LAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEY 236
F Y+ YL++ +D+ L W G VES++R L + +E K+ HP+ +
Sbjct: 355 FFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEVLAGIKI-AHPFTKPF 409
>sp|P51005|PAPO2_XENLA Poly(A) polymerase alpha-B OS=Xenopus laevis GN=papola-b PE=2 SV=1
Length = 484
Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/263 (39%), Positives = 150/263 (57%), Gaps = 18/263 (6%)
Query: 65 LLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKT 124
+LVAR CQLYPNA+ S LV +FF V++ W WPNPV+L +E L VWDPR N D+
Sbjct: 1 MLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRY 60
Query: 125 HHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFES 184
H MPIITPAYP NS+YNVS ST VM+++F+ G I +E+ L KA+WS LF+ FF+
Sbjct: 61 HLMPIITPAYPQQNSTYNVSVSTRAVMVEEFKQGLAITDEILLVKAEWSKLFDAPNFFQK 120
Query: 185 YRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKL-----QCHPYPHEYVDT 239
Y++Y+ + A L W G VES++R L +E++ + L Q P P E ++
Sbjct: 121 YKHYILLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPSPSE--NS 178
Query: 240 SKPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEF-----KLSINMYMFWKPGMEICVS 294
K + +GL K E E D+ ++ F + +IN MF + ++I
Sbjct: 179 EKEEFRTMWVIGLVFKKME-NSENLSVDLTYDIQSFTDTVYRQAINSKMF-ETEIKIAAM 236
Query: 295 HIRRKQ----IPPYVFPEGYKRT 313
H++RKQ +P +V P+ K +
Sbjct: 237 HVKRKQLHQLLPSHVLPKKKKHS 259
>sp|Q51D88|PAP_ENTHI Poly(A) polymerase OS=Entamoeba histolytica GN=16.t00038 PE=2 SV=1
Length = 522
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 108/218 (49%), Gaps = 15/218 (6%)
Query: 2 SVLNDVDEPTVRSLNGCRVADQILKLVPN--VEHFCTTLRCLKFWAKRRGVYSNVTGFLG 59
++L ++DE R++NG R D I VPN E F +R +K W K+RG+Y V FL
Sbjct: 151 NILKNMDELDTRAINGVRNTDIIDAFVPNHSEEAFRVMVRTIKLWTKKRGIYGYVYCFLN 210
Query: 60 GVNWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRW-PNPVMLCAIDEAELGFSVWDPRK 118
G++ +LVA+V L+ +FF+VY+ W W PVML D+
Sbjct: 211 GISIEILVAQVISENYQLDNVRLLEKFFQVYSSWDWLRTPVMLGTNDDF----------- 259
Query: 119 NRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQ-WSALFE 177
N + K + I+TPA P N++++++ +L ++ + + G I E W+ LF+
Sbjct: 260 NDKKKEGVIQILTPASPSENAAFSITKFSLEMIKRELKRGQEIVHEFSSEGVNDWAKLFK 319
Query: 178 PYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQL 215
P F Y +++ + +++ + L G ES L L
Sbjct: 320 PRHLFCGYYIFIEFIVTSSSLEGLTTTIGKFESGLVNL 357
>sp|P40971|LYS14_YEAST Lysine biosynthesis regulatory protein LYS14 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LYS14 PE=1
SV=2
Length = 790
Score = 35.8 bits (81), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 32/162 (19%)
Query: 345 SVDQDGPEKRQSISPQKQDSLSP--DHLAPSSVRSGTG--------SNVEPV--IPDKRV 392
++D++ PE R+ LSP +L+P+S+ SG+ S EP +P
Sbjct: 6 NLDENSPEDRELAK-----VLSPPGSYLSPASLDSGSSFTNSGTSTSCFEPKNNLPSLSF 60
Query: 393 LNQEIAEGGDVSNSSVITSVTSEVGSCEDVGNESVAGSSEGNNGSVEGSNNPVSSQSDCC 452
LN G + N +TS S ++G E+V ++ N+GS E + +P +S+ D
Sbjct: 61 LNARAGSLGGIFNHKQMTS-----PSNSNIGGENVESTTSSNDGSNENAGHPTTSEQD-Q 114
Query: 453 DADSQSLLENRHLDGNGAFQDRVHEELELNAGLGSVLQSTSG 494
+AD ++ D NG H L N + S + G
Sbjct: 115 NADHPTI---SQADDNG------HSSLTPNPAVTSTVTDKKG 147
>sp|Q9AJ64|SCA4_RICAU Antigenic heat-stable 120 kDa protein (Fragment) OS=Rickettsia
australis GN=sca4 PE=4 SV=1
Length = 991
Score = 32.7 bits (73), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 365 LSPDHLAPSSVRSGTGSNVEPVIPDKRVLNQEIAE--GGDVSNSSVITSVTSEVGSCEDV 422
++P+ SS+ + T + V P+ PD + L E A+ N +++ + T+ GS +D+
Sbjct: 350 ITPNQELKSSIETPTTTQVPPITPDSQPLQTETAQMPQSQQVNPNLLNAATALSGSMQDL 409
Query: 423 GNESVAGSSEGNNGSVEGSNNPVSSQSDCCDADSQSLLENRH 464
N AG ++ +G ++Q D +A + ++L N
Sbjct: 410 LNYVNAGLTKEKDG---------NTQIDLINAAATAILNNEK 442
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,121,824
Number of Sequences: 539616
Number of extensions: 8303461
Number of successful extensions: 21998
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 21728
Number of HSP's gapped (non-prelim): 324
length of query: 514
length of database: 191,569,459
effective HSP length: 122
effective length of query: 392
effective length of database: 125,736,307
effective search space: 49288632344
effective search space used: 49288632344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)