Query 010265
Match_columns 514
No_of_seqs 168 out of 376
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 03:02:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010265.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010265hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q79_A Poly(A) polymerase alph 100.0 4.8E-85 1.6E-89 698.1 26.9 315 2-317 188-509 (514)
2 2hhp_A Poly(A) polymerase; tem 100.0 3.3E-81 1.1E-85 670.6 27.7 308 2-313 175-529 (530)
3 4fh3_A Poly(A) RNA polymerase 99.9 1.1E-27 3.6E-32 241.2 12.9 169 9-178 132-348 (349)
4 2ikf_A RNA uridylyl transferas 99.9 1.9E-24 6.5E-29 220.2 7.6 152 11-163 158-349 (353)
5 4e8f_A Poly(A) RNA polymerase 99.9 2.7E-23 9.2E-28 216.3 13.1 172 13-185 164-383 (405)
6 3nyb_A Poly(A) RNA polymerase 99.9 6.3E-22 2.1E-26 200.0 9.9 149 11-164 137-298 (323)
7 2b4v_A RNA editing complex pro 99.7 1.2E-17 4.2E-22 177.1 7.4 151 15-167 253-442 (468)
8 3hj4_A Minor editosome-associa 99.4 1.7E-12 5.9E-17 134.9 15.1 163 14-178 134-379 (384)
9 3pq1_A Poly(A) RNA polymerase; 99.2 4.2E-11 1.4E-15 127.2 12.5 133 14-179 278-460 (464)
10 1r89_A TRNA nucleotidyltransfe 95.5 0.088 3E-06 55.8 11.8 212 20-277 133-360 (437)
11 1px5_A 2'-5'-oligoadenylate sy 90.2 1.9 6.4E-05 43.4 11.3 110 31-156 201-324 (349)
12 2kng_A Protein LSR2; DNA-bindi 21.5 43 0.0015 26.1 1.9 19 38-56 15-33 (55)
No 1
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=4.8e-85 Score=698.11 Aligned_cols=315 Identities=42% Similarity=0.745 Sum_probs=284.7
Q ss_pred CCcCCCChhhhhccchhhHHHHHHHhCCChHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHhhCCCCChHH
Q 010265 2 SVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAVPSM 81 (514)
Q Consensus 2 slL~nLDe~svRSLNG~RVtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSNv~GyLGGVsWAILVArVCQLyPnas~s~ 81 (514)
++|+|||++|++||||+|++|+|+++||+.+.||.++|+||+|||+||||+|++||||||+|+||||++||+|||+++++
T Consensus 188 ~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~~Ql~P~~s~~~ 267 (514)
T 1q79_A 188 SLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIAST 267 (514)
T ss_dssp GGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHHHSTTCCHHH
T ss_pred hhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCCccHHHHHHHHHHHHHhCCCCCHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCceeccccccccCCCcccCCCCCCCCCCCcceeecCCCCCcCcccccCcchHHHHHHHHHHHHhH
Q 010265 82 LVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTI 161 (514)
Q Consensus 82 Ll~~FF~vYS~W~Wp~PV~L~~i~~~~lg~~vW~P~~~~rdr~hlMPIITPayP~mNSt~NVS~STl~vI~~Ef~Rg~~I 161 (514)
||.+||.+|++|+|++||+|++++++.+++++|+|+.+++|+.|+||||||+||++|+|+|||++|+++|++||+||.+|
T Consensus 268 LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~N~~~nVs~st~~~I~~Ef~rA~~i 347 (514)
T 1q79_A 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAI 347 (514)
T ss_dssp HHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhcccchhhhcCCcchhhccccEEEEEEEeCChhhhhhhhhhhHHHHHHHHHHhhhccCCceeeccCCCCCCCCCC
Q 010265 162 CEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSK 241 (514)
Q Consensus 162 ~~~i~~~~~~W~~LFep~~FF~~Yk~YL~I~v~a~s~ed~~~w~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~~f~d~~~ 241 (514)
++++..++.+|++||+|++||.+|+|||+|++++.+++++.+|.||||||||.|+.+||+. +++..|||||++|.+...
T Consensus 348 l~~i~~~~~~w~~Lf~~~~ff~~y~~yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~~le~~-~~i~~a~~~P~~f~~~~~ 426 (514)
T 1q79_A 348 TDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPKE 426 (514)
T ss_dssp HHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHTS-TTEEEEEECSCCEECCCS
T ss_pred HHHHhcCCCCHHHHhCCcchhhhcceEEEEEEEECCHHHhhhheehhhhhHHHHHHHhccC-CCceeeecCccccCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999985 344559999999987643
Q ss_pred ----CCceeEEEEeeeeCC---CCccCCCceecchHHHHHHHHHHhhccccCCceEEEEEeeccCCCCCCcCCCCccccC
Q 010265 242 ----PCAHCAFFMGLQRKP---GEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIRRKQIPPYVFPEGYKRTR 314 (514)
Q Consensus 242 ----~~~~~~ffIGL~~~~---~~~~~~~~~~DL~~~v~eF~~~I~~~~~~~~gm~i~Vs~Vkr~~LP~~V~~~g~~r~~ 314 (514)
..|.++|||||.++. ....+.+.++||+.++++|++.|++|..|+++|+|+|+|||+++||++||++|++|+|
T Consensus 427 ~~~~~~~~~~~~iGL~~~~~~~~~~~~~~~~~di~~~~~~F~~~~~~~~~~~~~~~i~v~~vk~~~Lp~~v~~~~~~~~~ 506 (514)
T 1q79_A 427 NPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLLPSHVLQKKK 506 (514)
T ss_dssp CTTSCCEEEEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHTTCCCTTCEEEEEEEEHHHHGGGCC--------
T ss_pred cccCCceeEEEEEEEeecccccccccCcccccchHHHHHHHHHHHhhccccCCCcEEEEEEechHHCchhhcchhccCCC
Confidence 357899999999865 2222345679999999999999999999999999999999999999999999999888
Q ss_pred CCc
Q 010265 315 HPR 317 (514)
Q Consensus 315 ~~~ 317 (514)
+.+
T Consensus 507 ~~~ 509 (514)
T 1q79_A 507 KHS 509 (514)
T ss_dssp ---
T ss_pred CCC
Confidence 754
No 2
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=3.3e-81 Score=670.56 Aligned_cols=308 Identities=36% Similarity=0.716 Sum_probs=287.2
Q ss_pred CCcCCCChhhhhccchhhHHHHHHHhCCChHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHhhCCCCChHH
Q 010265 2 SVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAVPSM 81 (514)
Q Consensus 2 slL~nLDe~svRSLNG~RVtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSNv~GyLGGVsWAILVArVCQLyPnas~s~ 81 (514)
++|+|||++|+|||||+|++|+|+++||+.+.||.++|+||+|||+||||+|.+|||||++|+||||++||+|||+++++
T Consensus 175 ~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~~lQl~P~~s~~~ 254 (530)
T 2hhp_A 175 NLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLYPNACSAV 254 (530)
T ss_dssp GGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHSTTCCHHH
T ss_pred hhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHHHHhcCCCCCHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCceeccccccccCCCcccCCCCCCCCCCCcceeecCCCCCcCcccccCcchHHHHHHHHHHHHhH
Q 010265 82 LVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTI 161 (514)
Q Consensus 82 Ll~~FF~vYS~W~Wp~PV~L~~i~~~~lg~~vW~P~~~~rdr~hlMPIITPayP~mNSt~NVS~STl~vI~~Ef~Rg~~I 161 (514)
||.+||.+|++|+|++||+|++++++.+++++|+|+.|++|++|+|||+||+||++|+|+|||.+|+++|++||+||.++
T Consensus 255 LL~~FF~~y~~~dw~~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~~I~~Ef~rA~~l 334 (530)
T 2hhp_A 255 ILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQI 334 (530)
T ss_dssp HHHHHHHHHHHCCTTSCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCceEecccCCCCccccccCcccCCCCCccceeEECCCCCCCccCccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhcccchhhhcCCcchhhccccEEEEEEEeC-ChhhhhhhhhhhHHHHHHHHHHhhhccCCceeeccCCCCCCCC-
Q 010265 162 CEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAA-NADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDT- 239 (514)
Q Consensus 162 ~~~i~~~~~~W~~LFep~~FF~~Yk~YL~I~v~a~-s~ed~~~w~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~~f~d~- 239 (514)
++++..++.+|.+||+|++||.+|+|||+|+++++ +++++..|.||||||+|.|+.+||+ .+++..|||||++|.+.
T Consensus 335 l~~i~~~~~~w~~Lf~~~~ff~~y~~~l~i~~~~~g~~~~~~~w~G~veSr~r~Lv~~Le~-~~~i~~a~~~p~~f~~~~ 413 (530)
T 2hhp_A 335 TNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEV-LAGIKIAHPFTKPFESSY 413 (530)
T ss_dssp HHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHT-STTEEEEEECSSCEEEEE
T ss_pred HHHHhcCCCCHHHHcCCCChHHhcCeEEEEEEEecCCHHHHhhhcchHHHHHHHHHHHhhc-ccCceeeecCCcccCccc
Confidence 99998888999999999999999999999999998 9999999999999999999999998 55667799999998431
Q ss_pred ------------------------------------C------CCCceeEEEEeeeeCCCCccCCCceecchHHHHHHHH
Q 010265 240 ------------------------------------S------KPCAHCAFFMGLQRKPGEVVQEGQQFDIRGSVEEFKL 277 (514)
Q Consensus 240 ------------------------------------~------~~~~~~~ffIGL~~~~~~~~~~~~~~DL~~~v~eF~~ 277 (514)
+ ...+.++|||||+++.. +.++++||+.++++|++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igl~~~~~---~~~~~~di~~~~~~F~~ 490 (530)
T 2hhp_A 414 CCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIE---NKKEKVDIHIPCTEFVN 490 (530)
T ss_dssp ECCSSSHHHHHHHHCSCHHHHTTCCSCC---------------CEEEEEEEEEEEEEC-------CCCCCCHHHHHHHHH
T ss_pred cccchhhhhhhhccccccccccccccccccccccccccccccccceeeEEEEEEEeecCC---CCCceEeChhHHHHHHH
Confidence 0 12356899999998753 23568999999999999
Q ss_pred HHhhccc-cCCc-eE-EEEEeeccCCCCCCcCCCCcccc
Q 010265 278 SINMYMF-WKPG-ME-ICVSHIRRKQIPPYVFPEGYKRT 313 (514)
Q Consensus 278 ~I~~~~~-~~~g-m~-i~Vs~Vkr~~LP~~V~~~g~~r~ 313 (514)
.|++|.. |+++ |+ |.|+|||+++||++||++|++|+
T Consensus 491 ~~~~~~~~~~~~~~~~~~v~~v~~~~lp~~v~~~~~~~~ 529 (530)
T 2hhp_A 491 LCRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDENEKRP 529 (530)
T ss_dssp HHHHTSTTTTCSSSEEEEEEEEEGGGCCGGGSCTTSCCC
T ss_pred HHHhhhhhcccCCcceEEEEEechhhCCHhhccCCCcCC
Confidence 9999997 8876 89 99999999999999999999774
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=99.95 E-value=1.1e-27 Score=241.18 Aligned_cols=169 Identities=18% Similarity=0.187 Sum_probs=135.9
Q ss_pred hhhhhccchhhHHHHHHHhCCChHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHhh------CCC------
Q 010265 9 EPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQL------YPN------ 76 (514)
Q Consensus 9 e~svRSLNG~RVtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSNv~GyLGGVsWAILVArVCQL------yPn------ 76 (514)
+-|+...+|+|.++.|..+++....||.++++||+|||+||||++..|+|||++|+|||++.||. +|+
T Consensus 132 Dis~~~~~g~~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~ 211 (349)
T 4fh3_A 132 DIGFNNRLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPL 211 (349)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTT
T ss_pred ecCcCcchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhccc
Confidence 45778899999999999999999999999999999999999999999999999999999999984 343
Q ss_pred --------------------------CChHHHHHHHHHhhh-cCCCCCceeccccccccC---------CCcccCCCCCC
Q 010265 77 --------------------------AVPSMLVSRFFRVYT-MWRWPNPVMLCAIDEAEL---------GFSVWDPRKNR 120 (514)
Q Consensus 77 --------------------------as~s~Ll~~FF~vYS-~W~Wp~PV~L~~i~~~~l---------g~~vW~P~~~~ 120 (514)
.+.+.||..||++|+ .|+|+++|+......+.+ ....|++..+.
T Consensus 212 ~~~~~~~~~~~~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~~~~~~~~~ 291 (349)
T 4fh3_A 212 KQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQI 291 (349)
T ss_dssp CCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC------------
T ss_pred cccccccCcccccccchhhcccccCcccHHHHHHHHHHHhhhccCCCCceEEecCCCCccchHHhcccccccccCccccc
Confidence 356799999999998 799999987643222111 12334444445
Q ss_pred CCCCCcceeecCCCCCcCcccccCcchHHHHHHHHHHHHhHhHHhhhcccchhhhcCC
Q 010265 121 RDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEP 178 (514)
Q Consensus 121 rdr~hlMPIITPayP~mNSt~NVS~STl~vI~~Ef~Rg~~I~~~i~~~~~~W~~LFep 178 (514)
.+..++|+|++|++|.+|+|++|+..++..|++||+||++++.+.. .+.+|+.||+.
T Consensus 292 ~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~~-~~~~~~~lfe~ 348 (349)
T 4fh3_A 292 IKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS-YPIPYDSLFEE 348 (349)
T ss_dssp ---CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCCS-SSCCGGGGGSC
T ss_pred CCCCceEEEECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhCcc-cCCCHHHHhhc
Confidence 5667899999999999999999999999999999999999997643 35689999985
No 4
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=99.90 E-value=1.9e-24 Score=220.16 Aligned_cols=152 Identities=15% Similarity=0.129 Sum_probs=127.0
Q ss_pred hhhccchhhHHHHHHHhCCChHHHHHHHHHHHHHHHHhccccccc-ccchhHHHHHHHHHHHhh------CC--------
Q 010265 11 TVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVT-GFLGGVNWALLVARVCQL------YP-------- 75 (514)
Q Consensus 11 svRSLNG~RVtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSNv~-GyLGGVsWAILVArVCQL------yP-------- 75 (514)
|+...+|++.++.|..++.....||.++++||+|||+||||++.. |+|||++|+|||+++||. +|
T Consensus 158 s~~n~~g~~~t~ll~~~~~~~p~~r~l~~~iK~wa~~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~ 237 (353)
T 2ikf_A 158 TAYRRNGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSR 237 (353)
T ss_dssp EESCCHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGG
T ss_pred EecCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCcCccccChhh
Confidence 456789999999999999888899999999999999999999999 999999999999999984 33
Q ss_pred ----------------CCChHHHHHHHHHhhh-cCCCCCceeccccccccC--CCcccCCC------CCCCCCCCcceee
Q 010265 76 ----------------NAVPSMLVSRFFRVYT-MWRWPNPVMLCAIDEAEL--GFSVWDPR------KNRRDKTHHMPII 130 (514)
Q Consensus 76 ----------------nas~s~Ll~~FF~vYS-~W~Wp~PV~L~~i~~~~l--g~~vW~P~------~~~rdr~hlMPII 130 (514)
+.+.+.|+..||++|+ +|+|+++|+.-.. .+.+ ....|++. .++.++.+.|+|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~fd~~~~vIsi~~-~~~~~k~~~~w~~~~~~~~~~~~~~~~~~l~Ie 316 (353)
T 2ikf_A 238 VEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEFDSDKQVISLNR-PGITTKEELDWTKSAEDFARMNGEKVHYQWCIE 316 (353)
T ss_dssp SCSSCCCCCCCCCTTTTHHHHHHHHHHHHHHHHTSCTTTEEECSSS-SSCEEHHHHTCSHHHHTTCEETTEECCCSSEEB
T ss_pred ccCCCcCCccccCCCCcccHHHHHHHHHHHhccccCcCceEEEcCC-CcceechhhcccccccccccccCCCCcceEEEE
Confidence 2346799999999999 8999999774211 1111 12357742 2234467899999
Q ss_pred cCCCCCcCcccccCcchHHHHHHHHHHHHhHhH
Q 010265 131 TPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICE 163 (514)
Q Consensus 131 TPayP~mNSt~NVS~STl~vI~~Ef~Rg~~I~~ 163 (514)
+|+.|.+|++++|+.+++..|++||+||++++.
T Consensus 317 DP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~~ 349 (353)
T 2ikf_A 317 DPYELNLNVGRNVTPLKRDFLRRHLEKARDTAL 349 (353)
T ss_dssp CSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999873
No 5
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=99.89 E-value=2.7e-23 Score=216.30 Aligned_cols=172 Identities=18% Similarity=0.204 Sum_probs=138.4
Q ss_pred hccchhhHHHHHHHhCCChHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHH-hh-----CCC----------
Q 010265 13 RSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVC-QL-----YPN---------- 76 (514)
Q Consensus 13 RSLNG~RVtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSNv~GyLGGVsWAILVArVC-QL-----yPn---------- 76 (514)
-..+|++.+..|..++.....||.++++||+|||+||||++..|+|||++|+|||+++| |. +|+
T Consensus 164 ~n~~g~~~t~ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~ 243 (405)
T 4e8f_A 164 NNRLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEK 243 (405)
T ss_dssp SCHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCC
T ss_pred cccchHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCcCcCCCcChHHHHHHHHHHHHhccCCCcCCchhhccccccc
Confidence 34579999999988876668899999999999999999999999999999999999999 73 332
Q ss_pred ----------------------CChHHHHHHHHHhhh-cCCCCCceeccccccccCC--CcccCCCCC-------CCCCC
Q 010265 77 ----------------------AVPSMLVSRFFRVYT-MWRWPNPVMLCAIDEAELG--FSVWDPRKN-------RRDKT 124 (514)
Q Consensus 77 ----------------------as~s~Ll~~FF~vYS-~W~Wp~PV~L~~i~~~~lg--~~vW~P~~~-------~rdr~ 124 (514)
.+...||..||++|+ .|+|.+.|+......+.+. .+.|++..+ ..+.+
T Consensus 244 ~~~g~~~~f~~~l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIsir~~g~~~~K~~k~w~~~~~~~g~~~~~~~~~ 323 (405)
T 4e8f_A 244 IVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDR 323 (405)
T ss_dssp EETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBEECSSSTTCCCBHHHHTCCC-------------CC
T ss_pred ccCCeeeccccchhhhccccccccHHHHHHHHHHHHhcccCCCCcEEEEecCCcccccccccccccccccccccccccCC
Confidence 357899999999999 8999998775331111121 246875421 12457
Q ss_pred CcceeecCCCCCcCcccccCcchHHHHHHHHHHHHhHhHHhhhcccchhhhcCCcchhhcc
Q 010265 125 HHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESY 185 (514)
Q Consensus 125 hlMPIITPayP~mNSt~NVS~STl~vI~~Ef~Rg~~I~~~i~~~~~~W~~LFep~~FF~~Y 185 (514)
+.|+|.+|+.|.+|++++|+..+++.|++||+||.+++.... .+.+|++||+++++..+.
T Consensus 324 ~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~-~~~~w~~Lf~~~~~~~~~ 383 (405)
T 4e8f_A 324 YILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS-YPIPYDSLFEEAPIPPRR 383 (405)
T ss_dssp CSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSS-SSCCGGGGGSCCCCC---
T ss_pred ceEEEECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhc-cCCCHHHHhCcCCCcccc
Confidence 899999999999999999999999999999999999998854 257899999999998754
No 6
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.3e-22 Score=200.00 Aligned_cols=149 Identities=17% Similarity=0.228 Sum_probs=124.9
Q ss_pred hhhccchhhHHHHHHHhCCChHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHhhCCCC---------ChHH
Q 010265 11 TVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNA---------VPSM 81 (514)
Q Consensus 11 svRSLNG~RVtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSNv~GyLGGVsWAILVArVCQLyPna---------s~s~ 81 (514)
+.-.++|+|.++.|.++++....||.++++||+|||+||||++..|+|||++|++||+++||++|+. +...
T Consensus 137 s~~~~~g~~~t~li~~~~~~~~~~r~lv~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~lg~ 216 (323)
T 3nyb_A 137 SFERTNGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGV 216 (323)
T ss_dssp ESSCSSTTHHHHHHHHHHHSCTTHHHHHHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGCHHH
T ss_pred EecCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCccccHHH
Confidence 3445799999999999999999999999999999999999999999999999999999999999853 3578
Q ss_pred HHHHHHHhhh-cCCCCCceecccccccc---CCCcccCCCCCCCCCCCcceeecCCCCCcCcccccCcchHHHHHHHHHH
Q 010265 82 LVSRFFRVYT-MWRWPNPVMLCAIDEAE---LGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQY 157 (514)
Q Consensus 82 Ll~~FF~vYS-~W~Wp~PV~L~~i~~~~---lg~~vW~P~~~~rdr~hlMPIITPayP~mNSt~NVS~STl~vI~~Ef~R 157 (514)
||..||++|+ +|+|++.++- +..+. ..-..|+.. ++..+.+.|+|++|+.|..|.+.++ ..++.|++||++
T Consensus 217 LL~~Ff~~Y~~~Fd~~~~~Is--v~~g~~~~~~k~~~~~~-~~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~~~F~~ 291 (323)
T 3nyb_A 217 LLIEFFELYGKNFGYDDVALG--SSDGYPVYFPKSTWSAI-QPIKNPFSLAIQDPGDESNNISRGS--FNIRDIKKAFAG 291 (323)
T ss_dssp HHHHHHHHHHHTCCTTTEEEE--ESSSCEEEEEGGGCGGG-CSCSCSSSCCBEETTEEEEETTTTC--TTHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCcEEE--EecCCcceeeHHhcccc-cccCCCceEEEeCCCCCCcccccch--HHHHHHHHHHHH
Confidence 9999999999 9999997664 22221 122457542 2223468899999999999999985 468899999999
Q ss_pred HHhHhHH
Q 010265 158 GNTICEE 164 (514)
Q Consensus 158 g~~I~~~ 164 (514)
|.+++.+
T Consensus 292 A~~~L~~ 298 (323)
T 3nyb_A 292 AFDLLTN 298 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=99.69 E-value=1.2e-17 Score=177.11 Aligned_cols=151 Identities=15% Similarity=0.155 Sum_probs=116.8
Q ss_pred cchhhHHHHHHHhCCChHH-HHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHhhC-----------------CC
Q 010265 15 LNGCRVADQILKLVPNVEH-FCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLY-----------------PN 76 (514)
Q Consensus 15 LNG~RVtd~ILrlVPn~e~-FR~aLR~IKlWAKrRGIYSNv~GyLGGVsWAILVArVCQLy-----------------Pn 76 (514)
.+|++.++.|..++--... ||.+..+||+|||+|||++...|+||+++|++||.+..|.. |+
T Consensus 253 ~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ~~~~lP~v~P~vlP~lq~l~~ 332 (468)
T 2b4v_A 253 GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPR 332 (468)
T ss_dssp SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCS
T ss_pred hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHHhcCcCCCCCcccccchhhccc
Confidence 6999999988877654456 99999999999999999999999999999999999998753 21
Q ss_pred ------------CChHHHHHHHHHhhh-cCCCCCceecccccccc---CCCcccCCCCCC-CCCCCcceeecCCCC----
Q 010265 77 ------------AVPSMLVSRFFRVYT-MWRWPNPVMLCAIDEAE---LGFSVWDPRKNR-RDKTHHMPIITPAYP---- 135 (514)
Q Consensus 77 ------------as~s~Ll~~FF~vYS-~W~Wp~PV~L~~i~~~~---lg~~vW~P~~~~-rdr~hlMPIITPayP---- 135 (514)
.+...||..||++|+ .|+|.+.|+-- ..+. .....|+...+. ....+.|+|..|+.|
T Consensus 333 ~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vISi--r~g~~~~K~~~~w~~~~n~~~~~~~~L~IeDPfd~~~~~ 410 (468)
T 2b4v_A 333 YPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSL--NRNRRSYRSDIGWNFPQNKKGTFSYNFCIEDPYEDVGTG 410 (468)
T ss_dssp SCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCS--SSSSCEEHHHHTCCCGGGEETTEECSSCBBCSSTTTTTT
T ss_pred ccCCCcccccCccCHHHHHHHHHHHHccccCCCCcEEEe--cCCcceecccccccccccccCCCcceEEEECCCCCCCCC
Confidence 136789999999999 99999987632 2221 112357642221 122357999999999
Q ss_pred CcCcccccCcchHHHHHHHHHHHHhHhHHhhh
Q 010265 136 CMNSSYNVSTSTLRVMMDQFQYGNTICEEVEL 167 (514)
Q Consensus 136 ~mNSt~NVS~STl~vI~~Ef~Rg~~I~~~i~~ 167 (514)
..|++++|+..+++.|++||++|+++++....
T Consensus 411 ~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~~ 442 (468)
T 2b4v_A 411 GLNLVRHLHPAKFQLVKQEFLRAAQCMERFLP 442 (468)
T ss_dssp CCBTTTTCCHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999987543
No 8
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=99.41 E-value=1.7e-12 Score=134.89 Aligned_cols=163 Identities=15% Similarity=0.243 Sum_probs=123.0
Q ss_pred ccchhhHHHHHHHhCCC-hHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHhhC---CCC------------
Q 010265 14 SLNGCRVADQILKLVPN-VEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLY---PNA------------ 77 (514)
Q Consensus 14 SLNG~RVtd~ILrlVPn-~e~FR~aLR~IKlWAKrRGIYSNv~GyLGGVsWAILVArVCQLy---Pna------------ 77 (514)
..+|++.+..|..+.-- ...||.++++||+||++|||+++..|.||+++|++||+..+|.. |+-
T Consensus 134 n~~gi~ns~ll~~y~~~~p~rlr~LvllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~vLP~Lq~~~~~~~~~~~ 213 (384)
T 3hj4_A 134 NIGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTV 213 (384)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHHTSSCCCCCCCSTTSCCCH
T ss_pred ccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcCCCCCccccccccCCcccc
Confidence 45689999888877665 45799999999999999999999999999999999999999963 221
Q ss_pred ------------------------ChHHH----HHHHHHhhhcCCCCCcee-ccccccc-c---------C---C---Cc
Q 010265 78 ------------------------VPSML----VSRFFRVYTMWRWPNPVM-LCAIDEA-E---------L---G---FS 112 (514)
Q Consensus 78 ------------------------s~s~L----l~~FF~vYS~W~Wp~PV~-L~~i~~~-~---------l---g---~~ 112 (514)
+...| +..||+||+.|||.+-|+ |.++... . + | -+
T Consensus 214 ~~~~~~~~~~~l~~~~~~~s~N~~sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~~~~~~~~~~~~~~~~~~ 293 (384)
T 3hj4_A 214 ADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRL 293 (384)
T ss_dssp HHHHHHHTTCCCCGGGGGCSSCHHHHHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHhhhhhhcCCCCcCcCCCCcccHHHHHHHHHHHHHHHheecCCCCCEEEecCCcccccccchhhhhhhhhccchhhh
Confidence 12345 889999999999998654 3332211 0 0 0 12
Q ss_pred ccCC-----C-C----------------CCCCCCCcceeecCCCCCcCcccccCcchHHHHHHHHHHHHhHhHHhhhccc
Q 010265 113 VWDP-----R-K----------------NRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKA 170 (514)
Q Consensus 113 vW~P-----~-~----------------~~rdr~hlMPIITPayP~mNSt~NVS~STl~vI~~Ef~Rg~~I~~~i~~~~~ 170 (514)
.|.. . . -.+..+-++.|-. +--..|+++.|+.+....|++||+||++|+.+=+ ++.
T Consensus 294 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 371 (384)
T 3hj4_A 294 EWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQQEFNRLREMLIDKE-SEL 371 (384)
T ss_dssp HHHHHHHHSGGGCSCCHHHHHHHHHHHHHTSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHHHHHHHHHHHHTTTG-GGC
T ss_pred hhhhhhhccccCCCCCCCccccccCccccccccccceeeee-eccccccceecCccchhHHHHHHHHHHHHHhccc-ccc
Confidence 3431 0 0 1134567888888 8899999999999999999999999999987633 345
Q ss_pred chhhhcCC
Q 010265 171 QWSALFEP 178 (514)
Q Consensus 171 ~W~~LFep 178 (514)
..+++|..
T Consensus 372 ~~~~~~~~ 379 (384)
T 3hj4_A 372 KFDEVFRE 379 (384)
T ss_dssp CHHHHTCC
T ss_pred cHHHHhhh
Confidence 67777754
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=99.22 E-value=4.2e-11 Score=127.15 Aligned_cols=133 Identities=14% Similarity=0.235 Sum_probs=99.3
Q ss_pred ccchhhHHHHHHHhCCChHHHHHHHHHHHHHHHHhccccccccc-chhHHHHHHHHHHHhhC-----CC-----------
Q 010265 14 SLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGF-LGGVNWALLVARVCQLY-----PN----------- 76 (514)
Q Consensus 14 SLNG~RVtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSNv~Gy-LGGVsWAILVArVCQLy-----Pn----------- 76 (514)
-.+|++.+..|..+.--...||.+..+||.|||+|||.....|. ||+++|++||...+|.. |+
T Consensus 278 n~~gi~ns~ll~~y~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~ 357 (464)
T 3pq1_A 278 NRIALTSSELLYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAE 357 (464)
T ss_dssp CTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCSHHHHTTC
T ss_pred CCcHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcHHHHHHHHHHHHccCCCcCCChHHhccccCcc
Confidence 35699999999888776789999999999999999999999995 99999999999999974 21
Q ss_pred -------------------------CChHHHHHHHHHhhhcCCCCCceeccccccccCCCcccCCCCCCCCCCCcceeec
Q 010265 77 -------------------------AVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIIT 131 (514)
Q Consensus 77 -------------------------as~s~Ll~~FF~vYS~W~Wp~PV~L~~i~~~~lg~~vW~P~~~~rdr~hlMPIIT 131 (514)
.+...|+..||+||++|||.+-|+- |
T Consensus 358 ~~~~vdg~~~~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~FDf~~~vIs---------------------------I-- 408 (464)
T 3pq1_A 358 DKCVIEGNNCTFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAXXXXXXX---------------------------X-- 408 (464)
T ss_dssp ---------------------CCCCCCHHHHHHHHHHHGGGCCCCCCCCC---------------------------C--
T ss_pred cceeeccccccccccHhhcCCCCCcCCHHHHHHHHHHHHHhCCCcccccc---------------------------c--
Confidence 1347899999999999999876652 1
Q ss_pred CCCCCcCcccccCcchHHHHHHHHHHHHhHhHHhhh------cccchh--hhcCCc
Q 010265 132 PAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVEL------NKAQWS--ALFEPY 179 (514)
Q Consensus 132 PayP~mNSt~NVS~STl~vI~~Ef~Rg~~I~~~i~~------~~~~W~--~LFep~ 179 (514)
..|.+.||+.+.+..++.|+++|.-|++.-.. ...+|. .|+.|.
T Consensus 409 ----~~Nvs~nV~~~~~~r~~~~~r~a~~il~~~~~~~~~~~~~~~wgl~~ll~~~ 460 (464)
T 3pq1_A 409 ----XXXXXXXVSQSQLQKFVDLARESAWILQQEDTDRPSISSNRPWGLVSLLLPS 460 (464)
T ss_dssp ----C-------CHHHHHHHHHHHHHHHHHHHCC-----------CCTTGGGCC--
T ss_pred ----ccccccccCHHHHHHHHHHHHHHHHHHhhccccCcCCCCCCCcchHHHhccC
Confidence 79999999999999999999999999985332 234575 566553
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=95.48 E-value=0.088 Score=55.82 Aligned_cols=212 Identities=18% Similarity=0.186 Sum_probs=122.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhccccc--ccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHhhhcCCCCC
Q 010265 20 VADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSN--VTGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPN 97 (514)
Q Consensus 20 Vtd~ILrlVPn~e~FR~aLR~IKlWAKrRGIYSN--v~GyLGGVsWAILVArVCQLyPnas~s~Ll~~FF~vYS~W~Wp~ 97 (514)
-++++.+...+ +....|.+|.|.|.-|+|++ ..+-+.|+..=||+++. .+-..+|.. .+ +|..
T Consensus 133 H~~fv~~r~~~---~~~~VRLLK~f~k~~~~ygse~k~~gfSsYllELLv~~y------G~f~~vl~~----~~--~w~~ 197 (437)
T 1r89_A 133 HHKWLEGRIKG---KENEVRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFY------GSFLETVKN----AR--RWTR 197 (437)
T ss_dssp HHHHHTTTSTT---CHHHHHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHH------SSHHHHHHH----HT--TCCT
T ss_pred HHHHHHhhhhh---hhhHHHHHHHHHHhCCcCCCcccCCCCCHHHHHHHHHHH------cCHHHHHHH----HH--HhCC
Confidence 44555544433 88999999999999999988 45569999999999992 122233333 33 4544
Q ss_pred ceeccccccccCCCcccCCCCCCCCCCCcceeecCCCCCcCcccccCcchHHHHHHHHHHHHhHhHHhhhcccchhhhcC
Q 010265 98 PVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFE 177 (514)
Q Consensus 98 PV~L~~i~~~~lg~~vW~P~~~~rdr~hlMPIITPayP~mNSt~NVS~STl~vI~~Ef~Rg~~I~~~i~~~~~~W~~LFe 177 (514)
++.++- +. + ......++-||.|+-|..|.|.++|.-.+..+..+-+... .. +=.++|.
T Consensus 198 ~~~Id~-~~---~---------~~~~~~PlvViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l---~~------ps~~~f~ 255 (437)
T 1r89_A 198 RTVIDV-AK---G---------EVRKGEEFFVVDPVDEKRNVAANLSLDNLARFVHLCREFM---EA------PSLGFFK 255 (437)
T ss_dssp TEEEEG-GG---T---------EEEECSSCEEEETTEEEEETTTTCCHHHHHHHHHHHHHHH---HS------CCGGGGS
T ss_pred CeEEec-CC---C---------cccCCCCEEEECCCCCCCchhhcCCHHHHHHHHHHHHHHH---hC------ccHHhcC
Confidence 666532 10 0 1112357899999999999999999999888877655322 11 1223443
Q ss_pred Ccc--------hh---h-ccccEEEEEEEeCChhhhhhhhhhhHHHHHHHHHHhhhccCCceeeccCCCCCCCCCCCCce
Q 010265 178 PYL--------FF---E-SYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCHPYPHEYVDTSKPCAH 245 (514)
Q Consensus 178 p~~--------FF---~-~Yk~YL~I~v~a~s~ed~~~w~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~~f~d~~~~~~~ 245 (514)
|.+ +- . +=.+.+.|....++.-+-.- -|-++--.+.|...||+.....+... | .|.+. .
T Consensus 256 ~~~~~~~~~~~~~~~~~~r~t~~~~~~f~~p~~~~D~l-~pQl~k~~~~i~~~L~~~gF~v~~~~-~--~~~~~-----~ 326 (437)
T 1r89_A 256 PKHPLEIEPERLRKIVEERGTAVFAVKFRKPDIVDDNL-YPQLERASRKIFEFLERENFMPLRSA-F--KASEE-----F 326 (437)
T ss_dssp CCCCCCCCHHHHHHHHHHHTCEEEEEEEECCSCCHHHH-HHHHHHHHHHHHHHHHHTTCCEEEEE-E--EECSS-----E
T ss_pred CCCccccCHHHHHHHHHhCCcEEEEEEECCCCCCcccc-hHHHHHHHHHHHHHHHHCCCEEEEec-c--cccCC-----e
Confidence 321 11 1 12246666665555333333 37777777778888887655544333 1 12221 4
Q ss_pred eEEEEeeeeCCCC--ccCCCceecchHHHHHHHH
Q 010265 246 CAFFMGLQRKPGE--VVQEGQQFDIRGSVEEFKL 277 (514)
Q Consensus 246 ~~ffIGL~~~~~~--~~~~~~~~DL~~~v~eF~~ 277 (514)
|+.++=|...+-. ....+-.+.-..-.+.|..
T Consensus 327 ~~l~~e~~~~~lp~~~~~~GPpv~~~~~~~~F~~ 360 (437)
T 1r89_A 327 CYLLFECQIKEISRVFRRMGPQFEDERNVKKFLS 360 (437)
T ss_dssp EEEEEEESCSCCCSEEEEEEEETTCHHHHHHHHH
T ss_pred eEEEEEEcccccCCeeEeeCCCccchhhHHHHHH
Confidence 4444444322211 1112333444556778877
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=90.19 E-value=1.9 Score=43.42 Aligned_cols=110 Identities=12% Similarity=0.139 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHhhCCCCC---hHHHHHHHHHhhhcCCCCCceeccccccc
Q 010265 31 VEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAV---PSMLVSRFFRVYTMWRWPNPVMLCAIDEA 107 (514)
Q Consensus 31 ~e~FR~aLR~IKlWAKrRGIYSNv~GyLGGVsWAILVArVCQLyPnas---~s~Ll~~FF~vYS~W~Wp~PV~L~~i~~~ 107 (514)
...|+.+.|.+|.|-++.+. ......+.|+.+-+|++++....++.. ...-+.++|...++|. +..|.
T Consensus 201 ~~~~k~lIRLlK~W~~~~~~-~~~~~~~ssy~lELL~~~a~e~~~~~~~~~~~~~f~~vle~l~~~~-~~~i~------- 271 (349)
T 1px5_A 201 PTKLKSLIRLVKHWYQTCKK-THGNKLPPQYALELLTVYAWEQGSRKTDFSTAQGFQTVLELVLKHQ-KLCIF------- 271 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-TCSSCCCCHHHHHHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHTGG-GCEEC-------
T ss_pred cHHHHHHHHHHHHHHHHhhh-cccCCCCChHHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC-cccee-------
Confidence 46899999999999988774 223467899999999999987666543 4556788888888874 11222
Q ss_pred cCCCcccCCCCCCCC-----------CCCcceeecCCCCCcCcccccCcchHHHHHHHHH
Q 010265 108 ELGFSVWDPRKNRRD-----------KTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQ 156 (514)
Q Consensus 108 ~lg~~vW~P~~~~rd-----------r~hlMPIITPayP~mNSt~NVS~STl~vI~~Ef~ 156 (514)
|....+..+ +...--|+.|+-|.-|.+.. +.-....+..|-+
T Consensus 272 ------w~~~y~~~~~~~~~fl~~~l~~~~p~I~DP~dp~~NVa~~-~~~~~~~~~~~A~ 324 (349)
T 1px5_A 272 ------WEAYYDFTNPVVGRCMLQQLKKPRPVILDPADPTGNVGGG-DTHSWQRLAQEAR 324 (349)
T ss_dssp ------CCSSCCSSSHHHHHHHHHHHTSSSCEEBCTTCTTCBTTCS-CHHHHHHHHHHHH
T ss_pred ------eeccccccchhHHhhhhhhhcCCCCeeeCCCCCCCcccCC-chhhHHHHHHHHH
Confidence 321111111 01122599999999998876 6667777765443
No 12
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=21.45 E-value=43 Score=26.09 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcccccccc
Q 010265 38 LRCLKFWAKRRGVYSNVTG 56 (514)
Q Consensus 38 LR~IKlWAKrRGIYSNv~G 56 (514)
.++|+.||+..|+-=+--|
T Consensus 15 ~~aIR~WAr~nG~~VsdRG 33 (55)
T 2kng_A 15 SAAIREWARRNGHNVSTRG 33 (55)
T ss_dssp HHHHHHHHHHTTCCCCSSS
T ss_pred hHHHHHHHHHcCCcCCCCC
Confidence 6799999999987544333
Done!