BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010268
         (514 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Xylose
 pdb|4GBZ|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Glucose
 pdb|4GC0|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To
           6-Bromo-6-Deoxy-D-Glucose
          Length = 491

 Score = 32.3 bits (72), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 180 GWRWXXXXXXXXXXXXXXXXXVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLV 239
           GWR+                   PESPR+L  +G+  +A  +L KI    G  L +   V
Sbjct: 198 GWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIM---GNTLAT-QAV 253

Query: 240 SDWEHELQN 248
            + +H L +
Sbjct: 254 QEIKHSLDH 262


>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
           (Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
           2.80 A Resolution
          Length = 876

 Score = 29.3 bits (64), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 270 EDSISEAKEMK--SEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYG 327
           +D+I+   E K   +DS  +L ++ +G +T  +  +S  + + T L  + F  + F+Y  
Sbjct: 405 QDAINRNPEXKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDN 464

Query: 328 LVLLTTELNNGQNKCVSNE 346
           + +   + N+   K   NE
Sbjct: 465 IAVDWEDANSDYAKQYENE 483


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,055,062
Number of Sequences: 62578
Number of extensions: 464691
Number of successful extensions: 764
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 6
length of query: 514
length of database: 14,973,337
effective HSP length: 103
effective length of query: 411
effective length of database: 8,527,803
effective search space: 3504927033
effective search space used: 3504927033
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)