Query 010268
Match_columns 514
No_of_seqs 486 out of 1346
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 03:06:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010268.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010268hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 2.9E-41 9.7E-46 338.5 28.6 422 25-506 8-475 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 2.9E-40 9.9E-45 327.5 27.6 399 24-494 23-434 (451)
3 3o7q_A L-fucose-proton symport 100.0 3.9E-38 1.3E-42 311.0 35.3 373 24-488 21-427 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 8.7E-34 3E-38 284.1 29.7 416 37-500 21-478 (491)
5 2gfp_A EMRD, multidrug resista 100.0 1.4E-34 4.8E-39 279.4 14.7 351 32-477 3-360 (375)
6 2cfq_A Lactose permease; trans 100.0 1.1E-31 3.7E-36 262.4 15.1 383 39-502 17-408 (417)
7 2xut_A Proton/peptide symporte 100.0 8.3E-30 2.9E-34 257.3 22.1 163 39-201 22-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.6 1.2E-13 4.1E-18 136.1 20.0 169 34-202 257-433 (451)
9 3o7q_A L-fucose-proton symport 99.6 4E-14 1.4E-18 139.0 15.2 153 309-471 26-182 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.5 7.2E-14 2.4E-18 139.4 14.3 180 310-493 14-196 (491)
11 2cfq_A Lactose permease; trans 99.5 3E-13 1E-17 131.7 16.2 145 62-206 257-404 (417)
12 2gfp_A EMRD, multidrug resista 99.5 4.1E-14 1.4E-18 135.9 5.7 176 315-500 6-181 (375)
13 2xut_A Proton/peptide symporte 99.4 8.5E-13 2.9E-17 132.7 11.6 179 311-493 14-198 (524)
14 4gc0_A D-xylose-proton symport 99.3 6.3E-11 2.2E-15 118.0 19.6 174 33-206 281-467 (491)
15 2g9p_A Antimicrobial peptide l 60.7 4.8 0.00016 19.4 1.5 14 83-96 2-15 (26)
16 4dve_A Biotin transporter BIOY 23.7 1.8E+02 0.0061 23.9 6.2 25 70-94 99-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=2.9e-41 Score=338.49 Aligned_cols=422 Identities=19% Similarity=0.258 Sum_probs=312.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--------CcchhHHHHHHHHHHHHHhhhhHHhhhhhhCChHH
Q 010268 25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHL--------SPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKG 96 (514)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~G~r~~ 96 (514)
++.+.+.++..++.+..+++...++..+|.+.++++. +..+.|++.+++.+|.+++++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4455555666778888999999999999998887743 34567999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHHhhhccch-hhHHHHHHhhcCCCchhHHHHHH
Q 010268 97 FLITAIVTSAAGLLSA------------------FAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIF 157 (514)
Q Consensus 97 l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~ 157 (514)
++++.+++.++.++++ +++|++.++++|+++|++.|.. +....++.|+.|+++|++..++.
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 9999999999999988 4789999999999999999998 77789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcc--------cchHHHHHHhHHHHHHHHHHHHHccCChhhhhccCCchHHHHHHHHHHHHh
Q 010268 158 QTFWTVGTILEAGIAWLVMPR--------LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKIN 229 (514)
Q Consensus 158 ~~~~~~G~~~~~~i~~~l~~~--------~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (514)
+.+..+|.++++.++..+... .+||..+.+..++.++..+..+++||+|+++..+++.+++.+.+++....+
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~ 247 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT 247 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence 999999999999988776542 358888888888888888888999999999999999988888777654321
Q ss_pred CCCCCCCCCCCchhhhhhhhhcccCCCCCCCCCccccccCCCchhHhhhhccCCccccccccccchhhHHHHhhChhHHH
Q 010268 230 GTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIK 309 (514)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 309 (514)
.. +.+..+. .+...++++. ......++.+ +
T Consensus 248 ~~-----------~~~~~~~-----------------------~~~~~~~~~~--------------~~~~~~~~~~--~ 277 (491)
T 4gc0_A 248 LA-----------TQAVQEI-----------------------KHSLDHGRKT--------------GGRLLMFGVG--V 277 (491)
T ss_dssp HH-----------HHHHHHH-----------------------HHHHHHHHHH--------------TTHHHHSCCT--H
T ss_pred hh-----------HHHHHHH-----------------------HHHHHhhhhh--------------hhHHHHhccc--H
Confidence 10 0000000 0000000000 0111112211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccCCCcccCcccchhhhhhchhhHHHHHHHHHHHHhhHHHHHH
Q 010268 310 STLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSS 389 (514)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~ 389 (514)
..+......+......+....+.+.+....+ .+.........+.++..+++.++++++.||+|||+.+..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~ 347 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTLG----------ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII 347 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSS----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcchHHHHhcC----------CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhcc
Confidence 2233333344444455556666666654332 344344555667788899999999999999999999988
Q ss_pred HHHHHHHHhhhhhc---ccCc-chhHHHHHH-HHhhhcccccceeeccccccCcchhhHHHHHHHHHHHHhHhHHHHHHH
Q 010268 390 MFFCCCIFLVPLLF---QQPK-GLTTGLLFG-ARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAV 464 (514)
Q Consensus 390 ~~~~~~~~~~~~~~---~~~~-~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~p~i~g 464 (514)
+...+.++++.+.. .... +...+..++ ......+..++.+.+.+|++|++.|+++.|+.+.++++++++++.+.+
T Consensus 348 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p 427 (491)
T 4gc0_A 348 GALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFP 427 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred chHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777776655432 1222 222222222 222333445777889999999999999999999999999999999887
Q ss_pred HHHh------hcCchhHHHHHHHHHHHHHHHhhcccccccCcCCCCCC
Q 010268 465 ALVH------GCHQTAALILFELVILLSGISVLLFPFETTGRGLSDSL 506 (514)
Q Consensus 465 ~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (514)
.+.+ ..+....+++++++++++.++.+++.||||++++||.+
T Consensus 428 ~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~ 475 (491)
T 4gc0_A 428 MMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE 475 (491)
T ss_dssp HHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence 7644 23455678889999999999999999999999988754
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2.9e-40 Score=327.52 Aligned_cols=399 Identities=16% Similarity=0.163 Sum_probs=311.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHHHHHhhhhHHhhhhhhCChHHHHHHHHH
Q 010268 24 GKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIV 103 (514)
Q Consensus 24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~G~r~~l~~~~~~ 103 (514)
++.++..+..++++.+...++...+.+..|.+.+++ .|..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 345677778888888999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----hhhHHHHHHHHHHHhhhccch-hhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010268 104 TSAAGLLSAF----APNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPR 178 (514)
Q Consensus 104 ~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~l~~~ 178 (514)
.+++.+++++ +++++.++++|++.|++.+.. +...+++.|++|+++|++++++.+.+.++|.+++|.+++.+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999987 77789999999999999999999999999999999999998888
Q ss_pred cc-hHHHHHHhHHHHHHHHH-HHHHccCChhhhhccCCchHHHHHHHHHHHHhCCCCCCCCCCCchhhhhhhhhcccCCC
Q 010268 179 LG-WRWLLGLSAFPSSLLLL-LYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSS 256 (514)
Q Consensus 179 ~g-w~~~f~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (514)
.| ||+.|++.+++.++..+ .++++||+|+....++..+.
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 222 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY--------------------------------------- 222 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT---------------------------------------
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh---------------------------------------
Confidence 88 99999999888777654 45677887642111000000
Q ss_pred CCCCCCccccccCCCchhHhhhhccCCccccccccccchhhHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010268 257 NEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELN 336 (514)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (514)
+++ .+++.++ +++++. ..+....+.++++ +.++...+..++....++....+.|.+.
T Consensus 223 -~~~--------~~~~~~~-~~~~~~----------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (451)
T 1pw4_A 223 -KND--------YPDDYNE-KAEQEL----------TAKQIFMQYVLPN---KLLWYIAIANVFVYLLRYGILDWSPTYL 279 (451)
T ss_dssp -CCC--------------------------------CCTHHHHHHTSSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHB
T ss_pred -ccc--------ccccchh-hhhccc----------ccccchHHHHHcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000000 000000 0000113444544 3344445555566666777778888887
Q ss_pred cCccccccccccCCCcccCcccchhhhhhchhhHHHHHHHHHHHH--hhHHHHHHHHHHHH-HHhhhhhccc--CcchhH
Q 010268 337 NGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL--GRKLSMSSMFFCCC-IFLVPLLFQQ--PKGLTT 411 (514)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~--g~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~ 411 (514)
++. .+.+....+.......++.++++++.+++.||+ ++|+.+..+..+.. ++++.+.... +.+...
T Consensus 280 ~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (451)
T 1pw4_A 280 KEV---------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM 350 (451)
T ss_dssp TTB---------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHH
T ss_pred HHh---------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence 652 236777778888899999999999999999999 99988877776665 5555555442 445556
Q ss_pred HHHHHHHhhhcccccceeeccccccCcchhhHHHHHHHHHHHH-hHhHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHh
Q 010268 412 GLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRI-GGMVCPLVAVALVHGCHQTAALILFELVILLSGISV 490 (514)
Q Consensus 412 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~p~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 490 (514)
...++.|++.+...+....+..|.+|++.|++++|+.+.+..+ |..++|.+.|.+.+..|+...+++.+++.+++.++.
T Consensus 351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 351 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 6677778888888888889999999999999999999999999 999999999999999998888888888777777666
Q ss_pred hccc
Q 010268 491 LLFP 494 (514)
Q Consensus 491 ~~~~ 494 (514)
.+..
T Consensus 431 ~~~~ 434 (451)
T 1pw4_A 431 IVVM 434 (451)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=3.9e-38 Score=310.97 Aligned_cols=373 Identities=14% Similarity=0.090 Sum_probs=293.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHHHHHhhhhHHhhhhhhCChHHHHHHHHH
Q 010268 24 GKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIV 103 (514)
Q Consensus 24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~G~r~~l~~~~~~ 103 (514)
+++++..+..+++.++..++.....+++.|.+.+++|.|..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 34556666777778888889889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---hhhhhHHHHHHHHHHHhhhccch-hhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-cc
Q 010268 104 TSAAGLLS---AFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVM-PR 178 (514)
Q Consensus 104 ~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~l~-~~ 178 (514)
.+++.++. .++++++.++++|++.|++.+.. +...+++.|++|+++|++++++.+.+.++|.+++|.+++.+. +.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999 88899999999999999999988 777899999999999999999999999999999999999988 55
Q ss_pred cc-------------------------hHHHHHHhHHHHHHHHHHHHHc--cCChhhhhccCCchHHHHHHHHHHHHhCC
Q 010268 179 LG-------------------------WRWLLGLSAFPSSLLLLLYSVT--PESPRYLCLKGRTAEARHVLEKIAKINGT 231 (514)
Q Consensus 179 ~g-------------------------w~~~f~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (514)
.+ ||+.|++.+++.++..++.++. ||+++.. +++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~---------------- 241 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HSD---------------- 241 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CCC----------------
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---ccc----------------
Confidence 54 9999988877776665554443 3322100 000
Q ss_pred CCCCCCCCCchhhhhhhhhcccCCCCCCCCCccccccCCCchhHhhhhccCCccccccccccchhhHHHHhhChhHHHHH
Q 010268 232 KLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKST 311 (514)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 311 (514)
++ .+.....++++++++..
T Consensus 242 ------------------------------------~~----------------------~~~~~~~~~~~~~~~~~--- 260 (438)
T 3o7q_A 242 ------------------------------------AK----------------------QGSFSASLSRLARIRHW--- 260 (438)
T ss_dssp ------------------------------------SS----------------------TTSHHHHHHHHTTCSHH---
T ss_pred ------------------------------------cc----------------------ccchhhhHHHHHhChHH---
Confidence 00 00011145555555333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hcCccccccccccCCCcccCcccchhhhhhchhhHHHHHHHHHHHHhhHHHHHHH
Q 010268 312 LLLWLVFFGNAFSYYGLVLLTTEL-NNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSM 390 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~ 390 (514)
+...+..++....++....+.|.+ .++. .+.+...++.......++.++++++.+++.||++||+.+..+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~ 331 (438)
T 3o7q_A 261 RWAVLAQFCYVGAQTACWSYLIRYAVEEI---------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAY 331 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS---------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc---------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 333334444445555666677766 5433 136777778888889999999999999999999999999998
Q ss_pred HHHHHHHhhhhhcccCcchhHHHHHHHHhhhcccccceeeccccccCcchhhHHHHHHHHHHHHhHhHHHHHHHHHHhhc
Q 010268 391 FFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGC 470 (514)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~p~i~g~l~~~~ 470 (514)
.++.++.++.+.+.++.+. ....++.+++.+..++..+++..|.+|++ ++++.++.. ...+|+.++|.+.|.+.|..
T Consensus 332 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 332 ALIAMALCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 8888887777766655443 44457778888888899999989999966 888888877 67799999999999999998
Q ss_pred C-chhHHHHHHHHHHHHHH
Q 010268 471 H-QTAALILFELVILLSGI 488 (514)
Q Consensus 471 g-~~~~~~~~~~~~~~~~~ 488 (514)
| +...+.+.+++.++..+
T Consensus 409 g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 409 GNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp TSSGGGGHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 8 77777765554444433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=8.7e-34 Score=284.08 Aligned_cols=416 Identities=12% Similarity=0.003 Sum_probs=267.8
Q ss_pred HHHHHHHHHHHH-HHHHHHhhhh-----cCCCcchhHHHHHHHHHHHHHhhhhHHhhhhh-hCChHHHHHHHHHHHHHHH
Q 010268 37 GWISEAMEMMLL-SFVGPAVQSL-----WHLSPNQESLITSVVFAGMLVGAYSWGIVSDN-FGRRKGFLITAIVTSAAGL 109 (514)
Q Consensus 37 ~~~~~~~~~~~~-~~~~~~~~~~-----~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr-~G~r~~l~~~~~~~~~~~~ 109 (514)
..+...+..... ....+++.++ +|.|..+.|++.+++.++..++++++|+++|| +|||+++..+.++.+++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (491)
T 4aps_A 21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHI 100 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 334444444444 3333444555 99999999999999999999999999999999 8999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhhhccch-hhHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Q 010268 110 LSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPN--RGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLG 186 (514)
Q Consensus 110 ~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~i~~~l~~~~gw~~~f~ 186 (514)
+++++++++.++++|++.|++.+.. +...+++.|++|+++ |+.++++++.+.++|..++|.+++.+.+..|||+.|+
T Consensus 101 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~ 180 (491)
T 4aps_A 101 VLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFS 180 (491)
T ss_dssp HHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 9999999999999999999999988 777899999999988 7788888999999999999999999999899999999
Q ss_pred HhHHHHHHHHHHHHHc-cCChhh----hhccCCchHHHHHHHH-------------HHHHhCCCCCCCCCCCchhhhhhh
Q 010268 187 LSAFPSSLLLLLYSVT-PESPRY----LCLKGRTAEARHVLEK-------------IAKINGTKLPSGNLVSDWEHELQN 248 (514)
Q Consensus 187 ~~~~~~~i~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
+.++..++..+..++. ++..+. ...+.+.++.++..+. .....+.. +. +.......
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~-~~-----~~~~~~~~ 254 (491)
T 4aps_A 181 LAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWN-SL-----PAYINLLT 254 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSC-CT-----THHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCc-cc-----ccchhhhh
Confidence 9887777665554332 221110 0001111111111111 00000000 00 00000000
Q ss_pred hhcccCCCCCCCCCccccccCCCchhHhhhhccCCccccccccccchhhHHHHhhChhHHHHHHHHHHHHHHHHHHHHHH
Q 010268 249 KSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGL 328 (514)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (514)
.. .............++. ...... ++.....+..++..+.....+...
T Consensus 255 ~~-----------------~~~~~~~~~~~~~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 302 (491)
T 4aps_A 255 IV-----------------AIAIPVFYFAWMISSV--------------KVTSTE-HLRVVSYIPLFIAAVLFWAIEEQG 302 (491)
T ss_dssp HH-----------------HHHHHHHHHHHHC---------------------------CTTHHHHHHHHHHHHHHHGGG
T ss_pred HH-----------------HHHHHHHHHHHHhhcc--------------cccHHH-HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 00 0000000000000000 000000 000011222222233333333334
Q ss_pred HHHHHHhhcCccccccccccCCCcccCcccchhhhhhchhhHHHHHHHHHHHHhhHHHHH-----HHHHHHHHHhhhhhc
Q 010268 329 VLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMS-----SMFFCCCIFLVPLLF 403 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~-----~~~~~~~~~~~~~~~ 403 (514)
..+.+.+..+.. +.+....+.......+..+++.++.+++.||++||+... .+..+.+++++.+..
T Consensus 303 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 373 (491)
T 4aps_A 303 SVVLATFAAERV---------DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAI 373 (491)
T ss_dssp GTHHHHHHHHSC---------CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHH
T ss_pred cHHHHHHHHHHh---------ccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH
Confidence 444444443211 133345677778888899999999999999999886544 666666666555543
Q ss_pred c---------cCcchhHHHHHHHHhhhcccccceeeccccccCcchhhHHHHHHHHHHHHhHhHHHHHHHHHHhhcCchh
Q 010268 404 Q---------QPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTA 474 (514)
Q Consensus 404 ~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~p~i~g~l~~~~g~~~ 474 (514)
. .+.+......++.+++.+...+..+.+..|.+|++.|+++.|+.+....+|..++|.+.+.+.+. ++..
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~ 452 (491)
T 4aps_A 374 PGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVA 452 (491)
T ss_dssp HHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTH
T ss_pred HHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHH
Confidence 2 24455666777888888888899999999999999999999999999999999999999887664 5666
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCc
Q 010268 475 ALILFELVILLSGISVLLFPFETTGR 500 (514)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (514)
.+..++++.+++.++.++..++.+++
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 453 YFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776666555444
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=1.4e-34 Score=279.38 Aligned_cols=351 Identities=14% Similarity=0.055 Sum_probs=271.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHHHHHhhhhHHhhhhhhCChHHHHHHHHHHHHHHHHH
Q 010268 32 AYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLS 111 (514)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~G~r~~l~~~~~~~~~~~~~~ 111 (514)
..+++..+...+....+.+..|.+.+++|.|..+.|++.+.+.++..++++++|+++||+|||++++++..+.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 34556677788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhhhccch-hhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHH
Q 010268 112 AFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAF 190 (514)
Q Consensus 112 ~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~l~~~~gw~~~f~~~~~ 190 (514)
.++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|..++|.+++++.+..|||..|++.++
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLV 162 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999999999987 77779999999999999999999999999999999999999988899999999888
Q ss_pred HHHHHHH-HHHHccCChhhhhccCCchHHHHHHHHHHHHhCCCCCCCCCCCchhhhhhhhhcccCCCCCCCCCccccccC
Q 010268 191 PSSLLLL-LYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARD 269 (514)
Q Consensus 191 ~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (514)
..++..+ ..+++||+++... +++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~---~~~----------------------------------------------------- 186 (375)
T 2gfp_A 163 LCAGVTFSMARWMPETRPVDA---PRT----------------------------------------------------- 186 (375)
T ss_dssp HHHHHHCCCCCSSCCCSTTTC---CCC-----------------------------------------------------
T ss_pred HHHHHHHHHHHHCcccCCCCc---ccc-----------------------------------------------------
Confidence 8777665 4555676543100 000
Q ss_pred CCchhHhhhhccCCccccccccccchhhHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccC
Q 010268 270 EDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQS 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (514)
+ ....+++++++ +.++...+..+......+....+.|.+.++. .
T Consensus 187 -----------~-------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 230 (375)
T 2gfp_A 187 -----------R-------------LLTSYKTLFGN---SGFNCYLLMLIGGLAGIAAFEACSGVLMGAV---------L 230 (375)
T ss_dssp -----------C-------------TTTCSTHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH---------H
T ss_pred -----------c-------------HHHHHHHHhcC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------h
Confidence 0 00012222322 2333344444455555556666666665431 1
Q ss_pred CCcccCcccchhhhhhchhhHHHHHHHHHHHHhhHHHHHHHHHH-HHHHhhh--hhc--ccCcchhHHHHHHHHhhhccc
Q 010268 350 GKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFC-CCIFLVP--LLF--QQPKGLTTGLLFGARICITVT 424 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~-~~~~~~~--~~~--~~~~~~~~~~~~~~g~~~~~~ 424 (514)
+.++...+.......++.++++++.+++.||++++. ..+..+ ...+... ... ..+.+...+..++.+++.+..
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 308 (375)
T 2gfp_A 231 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGML 308 (375)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHh
Confidence 256666678888888999999999999999998832 222222 2222221 111 124445556677788888888
Q ss_pred ccceeeccccccCcchhhHHHHHHHHHHHHhHhHHHHHHHHHHhhcCchhHHH
Q 010268 425 FTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALI 477 (514)
Q Consensus 425 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~p~i~g~l~~~~g~~~~~~ 477 (514)
.+...++..|..| +.|+++.|+.+....+|..++|.+.|.+.+..++...+.
T Consensus 309 ~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~ 360 (375)
T 2gfp_A 309 FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLL 360 (375)
T ss_dssp SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 9999999999998 899999999999999999999999999988765544443
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.97 E-value=1.1e-31 Score=262.41 Aligned_cols=383 Identities=14% Similarity=0.053 Sum_probs=244.0
Q ss_pred HHHHHHHHHHHHHHHHh-hhhcCCCcchhHHHHHHHHHHHHHhhhhHHhhhhhhCChHHHHHHHHHHHHHH---HHHhhh
Q 010268 39 ISEAMEMMLLSFVGPAV-QSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAG---LLSAFA 114 (514)
Q Consensus 39 ~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~G~r~~l~~~~~~~~~~~---~~~~~~ 114 (514)
+..........+..|.+ .+++|.|+.+.|++.+.+.++..++++++|+++||+|||++++++..+.+++. ....++
T Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~ 96 (417)
T 2cfq_A 17 FFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG 96 (417)
T ss_dssp HHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666665 45689999999999999999999999999999999999999998887765432 222333
Q ss_pred hhHH-HHHHHHHHHhhhccch-hhHHHHHHhhcCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHH
Q 010268 115 PNYY-LLLFFRCLVGLGLGGG-PVLASWFLEFIPA--PNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAF 190 (514)
Q Consensus 115 ~~~~-~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~i~~~l~~~~gw~~~f~~~~~ 190 (514)
+... .++..+++.|++.+.. +...+.+.++.++ ++|+...+.......+|..++|.+++++.+ .+||..|++.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~ 175 (417)
T 2cfq_A 97 PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSG 175 (417)
T ss_dssp HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHH
Confidence 3221 2344566666655543 2222333333322 356777788888899999999999999887 589999988777
Q ss_pred HHHHHHHHHHHccCChhhhhccCCchHHHHHHHHHHHHhCCCCCCCCCCCchhhhhhhhhcccCCCCCCCCCccccccCC
Q 010268 191 PSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDE 270 (514)
Q Consensus 191 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (514)
..++..+..++.+++++. +.+.+ ++ ++
T Consensus 176 ~~~~~~~~~~~~~~~~~~---~~~~~-----------------------------------------~~---------~~ 202 (417)
T 2cfq_A 176 CALILAVLLFFAKTDAPS---SATVA-----------------------------------------NA---------VG 202 (417)
T ss_dssp TTTTHHHHSCSSCCCCSC---SSCSS-----------------------------------------SS---------SS
T ss_pred HHHHHHHHHHHcCccccc---ccccc-----------------------------------------cc---------cc
Confidence 655554444444433210 00000 00 00
Q ss_pred CchhHhhhhccCCccccccccccchhhHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccCC
Q 010268 271 DSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSG 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (514)
+ ++ .+.....++.+++++..+..+. ..+.....++....+.|.+..+... ..+
T Consensus 203 ~--------~~----------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 255 (417)
T 2cfq_A 203 A--------NH----------SAFSLKLALELFRQPKLWFLSL---YVIGVSCTYDVFDQQFANFFTSFFA------TGE 255 (417)
T ss_dssp S--------CC----------CCCCHHHHHHHTTCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTSS------SHH
T ss_pred c--------cc----------ccccHHHHHHHhcCCchhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHh------ccC
Confidence 0 00 0000113344444332222222 2222222333333334444321110 000
Q ss_pred CcccCcccchhhhhhchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhcccCcchhHHHHHHHHhhhcccccceee
Q 010268 351 KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYV 430 (514)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 430 (514)
.+....+....+..++.+++.++.+++.||+|||+.+..+..+.++..+.+.+..+.+...+..++.+++.+...+..+.
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222355566667788899999999999999999988888877776666655555555555555556665555566678
Q ss_pred ccccccCcchhhHHHHHH-HHHHHHhHhHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhcccccccCcCC
Q 010268 431 YAPEIYPTSVRTTGVGVA-SSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGL 502 (514)
Q Consensus 431 ~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~p~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (514)
+..|.+|++.|+++.|+. +...++|++++|.+.|.+.+..|+...+.+.+++.+++.++.++..+|+++.++
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 999999999999999995 778889999999999999998887777888888877777776666666555443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=8.3e-30 Score=257.27 Aligned_cols=163 Identities=14% Similarity=0.164 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHHH-HHhhhhcC------CCcchhHHHHHHHHHHHHHhhhhHHhhhhhh-CChHHHHHHHHHHHHHHHH
Q 010268 39 ISEAMEMMLLSFVG-PAVQSLWH------LSPNQESLITSVVFAGMLVGAYSWGIVSDNF-GRRKGFLITAIVTSAAGLL 110 (514)
Q Consensus 39 ~~~~~~~~~~~~~~-~~~~~~~~------~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~-G~r~~l~~~~~~~~~~~~~ 110 (514)
++..+......+.+ +.+.+++| .|..+.|++.+++.++..++++++|+++||+ |||+++.++.++.+++.++
T Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~ 101 (524)
T 2xut_A 22 ACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAF 101 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 33334433333444 45677899 9999999999999999999999999999999 9999999999999999999
Q ss_pred Hhhhh-hHHHHHHHHHHHhhhccch-hhHHHHHHhhcCCCchhHHHHH---HHHHHHHHHHHHHHHHHHHhcccchHHHH
Q 010268 111 SAFAP-NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVI---FQTFWTVGTILEAGIAWLVMPRLGWRWLL 185 (514)
Q Consensus 111 ~~~~~-~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~i~~~l~~~~gw~~~f 185 (514)
.++++ +++.+++.|++.|++.+.. +...+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+.+..|||+.|
T Consensus 102 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 181 (524)
T 2xut_A 102 LAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF 181 (524)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 99998 9999999999999999988 7778999999999999876666 99999999999999999999889999999
Q ss_pred HHhHHHHHHHHHHHHH
Q 010268 186 GLSAFPSSLLLLLYSV 201 (514)
Q Consensus 186 ~~~~~~~~i~~~~~~~ 201 (514)
++.+++.++..+..++
T Consensus 182 ~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 182 GIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988877766555444
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.57 E-value=1.2e-13 Score=136.11 Aligned_cols=169 Identities=15% Similarity=0.098 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh-cCCCcchhHHHHHHHHHHHHHhhhhHHhhhhhh--CChHHHHHHHHHHH-HHHH
Q 010268 34 AGMGWISEAMEMMLLSFVGPAVQSL-WHLSPNQESLITSVVFAGMLVGAYSWGIVSDNF--GRRKGFLITAIVTS-AAGL 109 (514)
Q Consensus 34 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~--G~r~~l~~~~~~~~-~~~~ 109 (514)
..+..+.............|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (451)
T 1pw4_A 257 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI 336 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 3344445555555566677777666 899999999999999999999999999999999 99999888877766 6777
Q ss_pred HHhhh--hhHHHHHHHHHHHhhhccch-hhHHHHHHhhcCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHhcccchHHHH
Q 010268 110 LSAFA--PNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTV-GTILEAGIAWLVMPRLGWRWLL 185 (514)
Q Consensus 110 ~~~~~--~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~i~~~l~~~~gw~~~f 185 (514)
+..+. .+.+.+.+..++.|++.+.. +....++.|.+|+++|++++|+.+....+ |..++|.+.+.+.+..||+..|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 416 (451)
T 1pw4_A 337 VYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF 416 (451)
T ss_dssp HTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHH
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 76666 36777888888999988777 66678999999999999999999999999 9999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHc
Q 010268 186 GLSAFPSSLLLLLYSVT 202 (514)
Q Consensus 186 ~~~~~~~~i~~~~~~~~ 202 (514)
++.++..++..++.+++
T Consensus 417 ~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 417 MVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99888887776665544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.55 E-value=4e-14 Score=139.00 Aligned_cols=153 Identities=14% Similarity=0.033 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccCCCcccCcccchhhhhhchhhHHHHHHHHHHHHhhHHHHH
Q 010268 309 KSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMS 388 (514)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~ 388 (514)
+.++..++.++...+.........|.+.++.+ .+..+.++..+...++..++.++.|+++||+|||+.+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----------~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~ 95 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFT----------LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGII 95 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----------CCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHH
Confidence 44455555566666665666667777765544 77778899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh---hcccCcchhHHHHHHHHhhhcccccceeeccccccCcchhhHHHHHHHHHHHHhHhHHHHHHHH
Q 010268 389 SMFFCCCIFLVPL---LFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVA 465 (514)
Q Consensus 389 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~p~i~g~ 465 (514)
.+.++.+++.++. ...++.+.+.+..++.|++.+...+...+++.|.+|+++|++++|+.+....+|..++|.+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 96 TGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888877 6777888888888999999999999999999999999999999999999999999999999999
Q ss_pred HH-hhcC
Q 010268 466 LV-HGCH 471 (514)
Q Consensus 466 l~-~~~g 471 (514)
+. +..+
T Consensus 176 l~~~~~~ 182 (438)
T 3o7q_A 176 LILSNVP 182 (438)
T ss_dssp HHHTSSC
T ss_pred HHhcccc
Confidence 98 5554
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.52 E-value=7.2e-14 Score=139.38 Aligned_cols=180 Identities=13% Similarity=0.055 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccCCCcccCcccchhhhhhchhhHHHHHHHHHHH-HhhHHHHH
Q 010268 310 STLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDR-LGRKLSMS 388 (514)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~ 388 (514)
.++..+...++..+.++....+.+.+..+.. ...+.+.+..+.++..+...++..++.++.|+++|| +|||+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~ 89 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLI----STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 4445555666666666666666665553310 000124777788899999999999999999999999 89999999
Q ss_pred HHHHHHHHHhhhhhcccCcchhHHHHHHHHhhhcccccceeeccccccCcch--hhHHHHHHHHHHHHhHhHHHHHHHHH
Q 010268 389 SMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSV--RTTGVGVASSIGRIGGMVCPLVAVAL 466 (514)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~p~i~g~l 466 (514)
.+.++.+++.+...+.++.+.+.+..++.|++.+...+...+++.|.+|++. |++++++.+....+|..++|.+.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 169 (491)
T 4aps_A 90 WGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAA 169 (491)
T ss_dssp HHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888888888888899999999999999999999999888 78888889999999999999999999
Q ss_pred HhhcCchhHHHHHHHHHHHHHHHhhcc
Q 010268 467 VHGCHQTAALILFELVILLSGISVLLF 493 (514)
Q Consensus 467 ~~~~g~~~~~~~~~~~~~~~~~~~~~~ 493 (514)
.+..||...+++.++..+++.++..+.
T Consensus 170 ~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 170 QEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988888777666666555444
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.50 E-value=3e-13 Score=131.69 Aligned_cols=145 Identities=10% Similarity=0.027 Sum_probs=121.4
Q ss_pred CcchhHHHHHHHHHHHHHhhhhHHhhhhhhCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccch-hhHHHH
Q 010268 62 SPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASW 140 (514)
Q Consensus 62 s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~ 140 (514)
+....|+..++..++..++.++.|+++||+|||+.+..+..+.+++.++.++.++.+.+++..++.+++.+.. +....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556688888888888999999999999999999999998888888888888888888888888888876655 555688
Q ss_pred HHhhcCCCchhHHHHH-HHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHH-HHHccCCh
Q 010268 141 FLEFIPAPNRGFWMVI-FQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLL-YSVTPESP 206 (514)
Q Consensus 141 i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~i~~~l~~~~gw~~~f~~~~~~~~i~~~~-~~~~~~~~ 206 (514)
+.|.+|++.|+++.++ ++....+|..++|.+++.+.+..|++..|.+.+++.++..++ ++..||++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 588888999999999999988889999999888887777655 34455543
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.45 E-value=4.1e-14 Score=135.86 Aligned_cols=176 Identities=9% Similarity=-0.021 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccccccccccCCCcccCcccchhhhhhchhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q 010268 315 WLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCC 394 (514)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~ 394 (514)
+...+.............|.+.++.+ .+..+.+...+...++..++.++.|+++||+|||+.+..+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~g----------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 75 (375)
T 2gfp_A 6 VLLVAVGQMAQTIYIPAIADMARDLN----------VREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIF 75 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSS----------STTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHcC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 33344444444444555666665444 77777788999999999999999999999999999999999998
Q ss_pred HHHhhhhhcccCcchhHHHHHHHHhhhcccccceeeccccccCcchhhHHHHHHHHHHHHhHhHHHHHHHHHHhhcCchh
Q 010268 395 CIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTA 474 (514)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~p~i~g~l~~~~g~~~ 474 (514)
++..+.....++.+...+..++.|++.+...+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+|..
T Consensus 76 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 155 (375)
T 2gfp_A 76 MLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRA 155 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHH
Confidence 88888887777778888888889999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCc
Q 010268 475 ALILFELVILLSGISVLLFPFETTGR 500 (514)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (514)
.+.+.+++.++..+...+..||++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 156 CYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 88888887777776566666665443
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.40 E-value=8.5e-13 Score=132.71 Aligned_cols=179 Identities=12% Similarity=0.045 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCc-cccccccccCCCcccCcccchhhhhhchhhHHHHHHHHHHHH-hhHHHHH
Q 010268 311 TLLLWLVFFGNAFSYYGLVLLTTELNNGQ-NKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRL-GRKLSMS 388 (514)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~ 388 (514)
++..++..++..+.++....+.+.+..+. +.. .+.+.+....++..+...++..++.++.|+++||+ |||+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 14 IPYIIASEACERFSFYGMRNILTPFLMTALLLS----IPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC----CSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 33444555556666666666666554321 100 00115677778889999999999999999999999 9999999
Q ss_pred HHHHHHHHHhhhhhccc-CcchhHHHHHHHHhhhcccccceeeccccccCcchhhHHHHH---HHHHHHHhHhHHHHHHH
Q 010268 389 SMFFCCCIFLVPLLFQQ-PKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGV---ASSIGRIGGMVCPLVAV 464 (514)
Q Consensus 389 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~p~i~g 464 (514)
.+.++.+++.+.+.+.. +.+.+.+..++.|++.+...+...+++.|.+|++.|++..+. .+....+|..++|.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~ 169 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMP 169 (524)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888887777 777777888889999999999999999999999999766655 88889999999999999
Q ss_pred HHHhhcCchhHHHHHHHHHHHHHHHhhcc
Q 010268 465 ALVHGCHQTAALILFELVILLSGISVLLF 493 (514)
Q Consensus 465 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 493 (514)
.+.+..||...+.+.+++.+++.++..+.
T Consensus 170 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 170 LLLKNFGAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998899888888877766665555443
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.32 E-value=6.3e-11 Score=117.96 Aligned_cols=174 Identities=16% Similarity=0.086 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHHHHHhhhhHHhhhhhhCChHHHHHHHHHHHHHHHHHh
Q 010268 33 YAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSA 112 (514)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~G~r~~l~~~~~~~~~~~~~~~ 112 (514)
......+........+....|.+.+..+.+............+...++.++.+++.||+|||+.++.+.....++.+..+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~ 360 (491)
T 4gc0_A 281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG 360 (491)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHH
Confidence 33334444444455566667888888888888888888888899999999999999999999999998888887776654
Q ss_pred hhh-----hHHH-HHHHHHHHhhhccchhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc------ccc
Q 010268 113 FAP-----NYYL-LLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP------RLG 180 (514)
Q Consensus 113 ~~~-----~~~~-l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~l~~------~~g 180 (514)
... +... +.+..+..+++.+..+....+.+|.+|.+.|++++|+......+|..+++.+...+.+ ..+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~ 440 (491)
T 4gc0_A 361 TAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH 440 (491)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT
T ss_pred HHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 331 1222 2222333344444446777899999999999999999999999999998877765533 345
Q ss_pred hHHHHHHhHHHHHHHHH-HHHHccCCh
Q 010268 181 WRWLLGLSAFPSSLLLL-LYSVTPESP 206 (514)
Q Consensus 181 w~~~f~~~~~~~~i~~~-~~~~~~~~~ 206 (514)
+...|++.++++++..+ .++++||+.
T Consensus 441 ~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 441 NGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred hhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 66778888887777755 467899984
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=60.66 E-value=4.8 Score=19.44 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=11.4
Q ss_pred hHHhhhhhhCChHH
Q 010268 83 SWGIVSDNFGRRKG 96 (514)
Q Consensus 83 ~~G~l~Dr~G~r~~ 96 (514)
+.|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=23.74 E-value=1.8e+02 Score=23.92 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhhhHHhhhhhhCCh
Q 010268 70 TSVVFAGMLVGAYSWGIVSDNFGRR 94 (514)
Q Consensus 70 ~s~~~~~~~i~~~~~G~l~Dr~G~r 94 (514)
..-|.+++.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3567888889999999999987543
Done!