Query 010270
Match_columns 514
No_of_seqs 427 out of 2979
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 22:33:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010270.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010270hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0697 Protein phosphatase 1B 100.0 2.7E-34 5.9E-39 278.9 14.6 198 298-513 21-236 (379)
2 PLN03145 Protein phosphatase 2 100.0 2.2E-33 4.8E-38 292.7 21.1 192 299-514 65-276 (365)
3 PF00481 PP2C: Protein phospha 100.0 6.1E-34 1.3E-38 283.6 13.9 187 313-514 8-208 (254)
4 KOG0698 Serine/threonine prote 100.0 6E-33 1.3E-37 287.0 17.9 188 313-514 48-250 (330)
5 PTZ00224 protein phosphatase 2 100.0 3.9E-30 8.4E-35 269.5 20.6 187 298-514 21-216 (381)
6 KOG0700 Protein phosphatase 2C 100.0 1.4E-28 3.1E-33 251.9 16.2 188 318-514 84-337 (390)
7 KOG0699 Serine/threonine prote 100.0 1.5E-28 3.3E-33 246.0 11.8 104 401-513 331-442 (542)
8 COG0631 PTC1 Serine/threonine 99.9 7.5E-27 1.6E-31 234.3 14.7 190 298-514 7-202 (262)
9 cd00143 PP2Cc Serine/threonine 99.9 7.8E-23 1.7E-27 200.8 21.0 185 313-514 9-202 (254)
10 smart00332 PP2Cc Serine/threon 99.9 1.8E-22 3.9E-27 199.1 20.5 183 313-514 14-205 (255)
11 PRK14559 putative protein seri 99.9 3.3E-22 7.1E-27 221.0 16.6 189 297-514 373-580 (645)
12 KOG1323 Serine/threonine phosp 99.9 6.6E-21 1.4E-25 189.7 16.7 212 291-514 68-415 (493)
13 PF00498 FHA: FHA domain; Int 99.7 1.3E-16 2.9E-21 127.0 8.6 68 204-280 1-68 (68)
14 cd00060 FHA Forkhead associate 99.5 4.2E-13 9.1E-18 114.0 12.6 92 177-281 1-93 (102)
15 PLN02927 antheraxanthin epoxid 99.4 2.3E-13 5E-18 151.9 9.4 114 159-283 512-638 (668)
16 TIGR03354 VI_FHA type VI secre 99.4 6.5E-13 1.4E-17 140.6 11.8 94 179-288 2-103 (396)
17 PF13672 PP2C_2: Protein phosp 99.3 9.5E-12 2E-16 120.1 13.0 160 313-488 6-176 (212)
18 COG1716 FOG: FHA domain [Signa 99.3 8.3E-12 1.8E-16 118.7 10.6 70 203-284 90-159 (191)
19 KOG0618 Serine/threonine phosp 99.3 6.3E-12 1.4E-16 140.3 10.3 196 296-514 519-722 (1081)
20 KOG1881 Anion exchanger adapto 99.3 1.2E-11 2.7E-16 134.4 10.8 121 162-294 141-270 (793)
21 smart00240 FHA Forkhead associ 99.2 4.4E-11 9.4E-16 89.8 6.0 50 205-255 2-52 (52)
22 COG3456 Predicted component of 99.1 3.9E-10 8.5E-15 117.0 8.5 95 178-288 3-104 (430)
23 KOG1379 Serine/threonine prote 99.0 1.6E-09 3.4E-14 109.1 11.0 161 317-497 89-266 (330)
24 KOG1882 Transcriptional regula 99.0 3.7E-10 8E-15 108.9 6.0 108 167-286 163-282 (293)
25 smart00331 PP2C_SIG Sigma fact 98.9 4.8E-08 1.1E-12 92.8 14.4 140 317-488 15-158 (193)
26 KOG1880 Nuclear inhibitor of p 98.5 7.3E-08 1.6E-12 95.9 4.0 114 165-291 5-120 (337)
27 TIGR02500 type_III_yscD type I 98.0 1.8E-05 3.9E-10 84.8 9.5 94 178-288 1-95 (410)
28 TIGR02865 spore_II_E stage II 98.0 0.00011 2.4E-09 84.5 16.2 156 296-489 549-707 (764)
29 KOG0615 Serine/threonine prote 97.5 0.00017 3.7E-09 75.6 6.1 77 203-288 65-154 (475)
30 PF07228 SpoIIE: Stage II spor 97.0 0.019 4.1E-07 54.1 13.8 125 334-488 3-133 (193)
31 KOG0245 Kinesin-like protein [ 96.6 0.006 1.3E-07 70.1 8.3 77 191-283 471-550 (1221)
32 KOG1892 Actin filament-binding 95.9 0.032 7E-07 63.7 9.4 95 177-288 356-455 (1629)
33 KOG2293 Daxx-interacting prote 95.7 0.029 6.3E-07 60.6 7.6 93 179-288 432-531 (547)
34 TIGR01663 PNK-3'Pase polynucle 94.5 0.071 1.5E-06 59.0 6.5 79 190-284 25-103 (526)
35 KOG0241 Kinesin-like protein [ 88.6 1 2.2E-05 52.2 6.8 71 203-285 468-538 (1714)
36 PF15102 TMEM154: TMEM154 prot 82.7 1.3 2.8E-05 40.7 3.4 27 13-39 68-94 (146)
37 PRK15367 type III secretion sy 75.6 15 0.00033 39.2 9.1 90 176-287 3-92 (395)
38 PF12273 RCR: Chitin synthesis 63.2 3.4 7.5E-05 37.1 1.0 18 10-27 4-21 (130)
39 PF15176 LRR19-TM: Leucine-ric 61.3 5.4 0.00012 34.3 1.8 31 9-39 22-52 (102)
40 PF13275 S4_2: S4 domain; PDB: 54.0 9.1 0.0002 30.5 1.9 32 246-286 33-64 (65)
41 cd01324 cbb3_Oxidase_CcoQ Cyto 50.7 21 0.00046 26.6 3.3 23 9-31 13-35 (48)
42 PRK11507 ribosome-associated p 50.1 22 0.00048 28.7 3.5 32 246-286 37-68 (70)
43 PRK10693 response regulator of 48.7 2.2E+02 0.0047 29.0 11.6 49 386-437 209-259 (303)
44 PF01479 S4: S4 domain; Inter 47.8 13 0.00028 26.9 1.8 23 246-277 26-48 (48)
45 PF12273 RCR: Chitin synthesis 47.8 17 0.00037 32.6 2.9 31 6-36 3-33 (130)
46 TIGR02988 YaaA_near_RecF S4 do 47.6 18 0.00039 27.6 2.6 25 246-279 34-58 (59)
47 PF06679 DUF1180: Protein of u 47.2 19 0.00042 33.9 3.2 27 8-34 95-121 (163)
48 PF11027 DUF2615: Protein of u 46.7 19 0.00041 31.3 2.8 26 8-33 53-78 (103)
49 PF07423 DUF1510: Protein of u 42.7 23 0.00049 35.0 3.1 20 9-28 17-36 (217)
50 PF08114 PMP1_2: ATPase proteo 41.1 13 0.00028 26.7 0.8 25 7-31 10-34 (43)
51 COG2501 S4-like RNA binding pr 39.1 44 0.00096 27.2 3.7 33 246-287 37-69 (73)
52 PF13253 DUF4044: Protein of u 36.1 48 0.001 23.2 2.9 22 4-25 9-30 (35)
53 PF02439 Adeno_E3_CR2: Adenovi 36.0 48 0.001 23.6 2.9 26 6-31 7-32 (38)
54 COG4736 CcoQ Cbb3-type cytochr 35.5 49 0.0011 26.0 3.3 27 7-33 10-36 (60)
55 KOG1110 Putative steroid membr 35.2 61 0.0013 31.0 4.5 61 10-74 9-69 (183)
56 PF12911 OppC_N: N-terminal TM 35.1 40 0.00088 25.2 2.8 22 5-26 14-35 (56)
57 COG5025 Transcription factor o 34.7 27 0.00058 39.6 2.4 68 218-292 124-192 (610)
58 smart00363 S4 S4 RNA-binding d 34.5 50 0.0011 23.7 3.2 28 245-281 25-52 (60)
59 PRK06531 yajC preprotein trans 33.3 34 0.00073 30.3 2.3 7 109-115 61-67 (113)
60 PF05545 FixQ: Cbb3-type cytoc 33.1 56 0.0012 24.1 3.2 23 9-31 12-34 (49)
61 PRK01777 hypothetical protein; 31.7 39 0.00085 28.9 2.5 28 241-279 46-73 (95)
62 KOG1094 Discoidin domain recep 29.2 93 0.002 35.3 5.3 24 12-35 397-420 (807)
63 PF14575 EphA2_TM: Ephrin type 28.8 63 0.0014 26.3 3.1 18 11-28 7-24 (75)
64 PF05393 Hum_adeno_E3A: Human 26.0 96 0.0021 26.2 3.7 28 9-36 37-64 (94)
65 PHA00007 E cell lysis protein 25.1 90 0.002 25.8 3.3 22 5-26 7-28 (91)
66 TIGR00847 ccoS cytochrome oxid 25.1 85 0.0018 23.8 2.9 9 44-52 30-38 (51)
67 cd01764 Urm1 Urm1-like ubuitin 23.3 66 0.0014 27.3 2.4 26 248-279 62-87 (94)
68 PF14316 DUF4381: Domain of un 23.3 52 0.0011 30.0 1.9 23 10-32 25-47 (146)
69 PF07172 GRP: Glycine rich pro 23.2 77 0.0017 27.1 2.8 8 15-22 11-18 (95)
70 cd00165 S4 S4/Hsp/ tRNA synthe 22.4 92 0.002 23.0 2.9 28 245-281 25-52 (70)
71 PF01102 Glycophorin_A: Glycop 21.6 70 0.0015 28.7 2.3 17 17-33 78-94 (122)
72 PF15102 TMEM154: TMEM154 prot 21.4 64 0.0014 29.8 2.0 32 10-41 62-93 (146)
No 1
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-34 Score=278.90 Aligned_cols=198 Identities=27% Similarity=0.348 Sum_probs=165.2
Q ss_pred eeeeeeecchhhhhcCCccCCCCceEEEEcCCC-CCCCceEEEEecCCCchHHHHHHHHHHHHHHHHHHhhhhhhh--hh
Q 010270 298 PFGVGVASDPMALRRGAKKLPMEDVCYYHWPLP-GVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRE--RL 374 (514)
Q Consensus 298 ~~~vG~as~~~~~~r~G~R~~nED~~~v~~~~~-~~~~~~lfgVfDGHGG~~aa~~as~~l~~~L~~~l~~~~~~e--~~ 374 (514)
.+.+|++|= +|||.+|||++.....++ +-.+|.||||||||.|+.+|.+++++|.+.+.+. ...+. +.
T Consensus 21 glryg~SSM------QGWR~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~ss---e~F~~~~k~ 91 (379)
T KOG0697|consen 21 GLRYGVSSM------QGWRVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISS---EEFRGMTKN 91 (379)
T ss_pred ceeeeeccc------cchhhhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhh---HHHhhhccC
Confidence 456677665 599999999998776554 3578999999999999999999999998887642 22111 11
Q ss_pred cccccHHHHHHHHHHHHHHHhhhc--------cCCCceEEEEEEecCCCceEEEEEEeccceEEEEeCCeEEEcCCCCCC
Q 010270 375 LSQCDASDVLRDAFFQTEASMNHH--------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRI 446 (514)
Q Consensus 375 ~~~~~i~~~L~~af~~~d~~i~~~--------~~G~TAtv~li~~~~~~~~~l~vANvGDSRa~L~r~g~~~~LT~DH~~ 446 (514)
-+.++.+.-|+..|.++|+.+... .+||||+++++.... +|++|+|||||++||+|.++.-|.||+|
T Consensus 92 gsv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h-----~y~~NcGDSRavl~rng~~~f~TqDHKP 166 (379)
T KOG0697|consen 92 GSVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTH-----IYIINCGDSRAVLCRNGEVVFSTQDHKP 166 (379)
T ss_pred CcHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCce-----EEEEecCcchhheecCCceEEeccCCCC
Confidence 234578899999999999988653 589999999997665 8999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCcccCcccccc-ccccccCCCEEeeecCC------Ccccccceeeeeeecccccceeeec
Q 010270 447 ASYSERLRIQETGEPLKDGETRLCG-LNLARMLGDKFLKQQDA------RFSAEPYISPVVHIDQASKAFALLA 513 (514)
Q Consensus 447 ~~~~E~~RI~~agg~v~~g~~Rv~G-L~vsRslGD~~lK~~dg------~v~seP~I~~~~~i~~~~~efLILA 513 (514)
.++.|++||+.+||.+. +.|++| |++||+|||+.+|+.++ .++++|+|... .-... ++|+|||
T Consensus 167 ~~p~EkeRIqnAGGSVM--IqRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~-~R~ee-deFivlA 236 (379)
T KOG0697|consen 167 YLPKEKERIQNAGGSVM--IQRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYII-ERSEE-DEFIVLA 236 (379)
T ss_pred CChHHHHHHhcCCCeEE--EEEecceeeeehhccCcccccCCCCCchhcccCCCCceEEe-ecccc-CcEEEEE
Confidence 99999999999999998 459999 99999999999999876 89999999833 33333 3499998
No 2
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=2.2e-33 Score=292.74 Aligned_cols=192 Identities=31% Similarity=0.444 Sum_probs=160.7
Q ss_pred eeeeeecchhhhhcCCccCCCCceEEEEcCCC--------CCCCceEEEEecCCCchHHHHHHHHHHHHHHHHHHhhhhh
Q 010270 299 FGVGVASDPMALRRGAKKLPMEDVCYYHWPLP--------GVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLK 370 (514)
Q Consensus 299 ~~vG~as~~~~~~r~G~R~~nED~~~v~~~~~--------~~~~~~lfgVfDGHGG~~aa~~as~~l~~~L~~~l~~~~~ 370 (514)
+.+|..+++ |.|+.|||++++..++. +.....||||||||||+.+|++|++++++.+.+...
T Consensus 65 ~~~~~~s~~------G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~---- 134 (365)
T PLN03145 65 VRSGAWADI------GSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDED---- 134 (365)
T ss_pred eEEEEEccc------cCCCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhc----
Confidence 467888884 78999999998754431 123468999999999999999999999998865211
Q ss_pred hhhhcccccHHHHHHHHHHHHHHHhhhc-------cCCCceEEEEEEecCCCceEEEEEEeccceEEEEeCCeEEEcCCC
Q 010270 371 RERLLSQCDASDVLRDAFFQTEASMNHH-------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSED 443 (514)
Q Consensus 371 ~e~~~~~~~i~~~L~~af~~~d~~i~~~-------~~G~TAtv~li~~~~~~~~~l~vANvGDSRa~L~r~g~~~~LT~D 443 (514)
+ ..++.++|.++|..+|..+.+. .+|||++++++..+. +|||||||||||++++|++++||+|
T Consensus 135 ----~-~~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~-----l~vaNvGDSRayl~r~g~~~~LT~D 204 (365)
T PLN03145 135 ----F-PREIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRS-----LVVANAGDCRAVLCRRGKAIEMSRD 204 (365)
T ss_pred ----c-chhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCe-----EEEEecCCceEEEEcCCeEEEecCC
Confidence 0 2357888999999999998653 479999999997554 9999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHcCCCcccCcccccc-ccccccCCCEEeeecC----CCcccccceeeeeeecccccceeeecC
Q 010270 444 HRIASYSERLRIQETGEPLKDGETRLCG-LNLARMLGDKFLKQQD----ARFSAEPYISPVVHIDQASKAFALLAR 514 (514)
Q Consensus 444 H~~~~~~E~~RI~~agg~v~~g~~Rv~G-L~vsRslGD~~lK~~d----g~v~seP~I~~~~~i~~~~~efLILA~ 514 (514)
|++.++.|++||++.||.+..+ |+.| +++||++||..+|..+ +.++++|+|. .+.+++.++ ||||||
T Consensus 205 H~~~~~~E~~RI~~~Gg~v~~g--~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~-~~~l~~~D~-fLILaS 276 (365)
T PLN03145 205 HKPMCSKERKRIEASGGYVYDG--YLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELM-TTQLTEEDE-FLIIGC 276 (365)
T ss_pred CCCCCHHHHHHHHHcCCceecc--eECCccccccccccccccccccccCCCcceEEEEE-EEECCCCCE-EEEEeC
Confidence 9999999999999999999877 8899 9999999999887542 2488999998 568887755 999986
No 3
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=6.1e-34 Score=283.62 Aligned_cols=187 Identities=37% Similarity=0.499 Sum_probs=151.4
Q ss_pred CCccCCCCceEEEEcCCC---CCCCceEEEEecCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccHHHHHHHHHH
Q 010270 313 GAKKLPMEDVCYYHWPLP---GVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFF 389 (514)
Q Consensus 313 ~G~R~~nED~~~v~~~~~---~~~~~~lfgVfDGHGG~~aa~~as~~l~~~L~~~l~~~~~~e~~~~~~~i~~~L~~af~ 389 (514)
+|+|..|||++++..++. +..+..+|||||||||+.+++++++.+++.+.+.+..... .++.++|..+|.
T Consensus 8 ~g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~-------~~~~~al~~a~~ 80 (254)
T PF00481_consen 8 QGVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDG-------NDIEEALRQAFL 80 (254)
T ss_dssp ECTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTC-------HHHHHHHHHHHH
T ss_pred CCCCCcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccc-------cchhhcccceee
Confidence 699999999999987553 4568899999999999999999999999888776554332 157889999999
Q ss_pred H-HHHHhhh-------ccCCCceEEEEEEecCCCceEEEEEEeccceEEEEeCCeEE-EcCCCCCCCCHHHHHHHHHcCC
Q 010270 390 Q-TEASMNH-------HYEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQI-KMSEDHRIASYSERLRIQETGE 460 (514)
Q Consensus 390 ~-~d~~i~~-------~~~G~TAtv~li~~~~~~~~~l~vANvGDSRa~L~r~g~~~-~LT~DH~~~~~~E~~RI~~agg 460 (514)
. ++..+.. ..+||||+++++..+. +||||||||||||++++... +||+||+|.++.|+.||+++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~-----l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg 155 (254)
T PF00481_consen 81 AFTDESLYSDSENNESSKSGSTATVALIDGNK-----LYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGG 155 (254)
T ss_dssp HHHHHHHHHHHHHHTHTTSEEEEEEEEEETTE-----EEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-
T ss_pred ecccccccccccccccccccccccccccccce-----eEEEeeeeeeeeeeeccccccccccccccchhhccceeecccc
Confidence 9 8877764 3889999999997654 99999999999999999988 9999999999999999999999
Q ss_pred CcccCcccccc-ccccccCCCEEeeecCC-CcccccceeeeeeecccccceeeecC
Q 010270 461 PLKDGETRLCG-LNLARMLGDKFLKQQDA-RFSAEPYISPVVHIDQASKAFALLAR 514 (514)
Q Consensus 461 ~v~~g~~Rv~G-L~vsRslGD~~lK~~dg-~v~seP~I~~~~~i~~~~~efLILA~ 514 (514)
.+.. ..|+.| |++||+|||..+|..++ .++++|+|. .+.++++ ++||||||
T Consensus 156 ~v~~-~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~-~~~l~~~-d~flvlaS 208 (254)
T PF00481_consen 156 RVSE-NGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDIS-EVDLTPD-DEFLVLAS 208 (254)
T ss_dssp GEEE-TEEETTTBSSSB-EE-GGGTTCTSSSSB---EEE-EEEEBTT-EEEEEEE-
T ss_pred cccc-chhhhhccccccccccccccccccceeeeecccc-ccccccc-ceEEEEEc
Confidence 9984 459999 89999999999998332 599999998 6789998 45999996
No 4
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=6e-33 Score=286.99 Aligned_cols=188 Identities=35% Similarity=0.455 Sum_probs=157.8
Q ss_pred CCccCCCCceEEEEcCCC----CCC-CceEEEEecCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccHHHHHHHH
Q 010270 313 GAKKLPMEDVCYYHWPLP----GVD-KFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDA 387 (514)
Q Consensus 313 ~G~R~~nED~~~v~~~~~----~~~-~~~lfgVfDGHGG~~aa~~as~~l~~~L~~~l~~~~~~e~~~~~~~i~~~L~~a 387 (514)
+|+|+.|||++.....+. +.. +..+|||||||||+.+|+|+.++++..+.+.+...... ..++++++++
T Consensus 48 ~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~------~~~~~a~~~~ 121 (330)
T KOG0698|consen 48 RGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDR------QDVKDALRRA 121 (330)
T ss_pred CCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccch------HHHHHHHHHH
Confidence 699999999998876533 223 68999999999999999999999999998765543321 3579999999
Q ss_pred HH-HHHHHhhh-----ccCCCceEEEEEEecCCCceEEEEEEeccceEEEEeCC-eEEEcCCCCCCCCHHHHHHHHHcCC
Q 010270 388 FF-QTEASMNH-----HYEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDG-KQIKMSEDHRIASYSERLRIQETGE 460 (514)
Q Consensus 388 f~-~~d~~i~~-----~~~G~TAtv~li~~~~~~~~~l~vANvGDSRa~L~r~g-~~~~LT~DH~~~~~~E~~RI~~agg 460 (514)
|. ++|..+.. ...|+||+++++.... + |||||+||||||||+.| .+++||.||+|..+.|+.||+++||
T Consensus 122 F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~-~---l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG 197 (330)
T KOG0698|consen 122 FLTKTDSEFLEKREDNRSGGSTAVVALIKKGR-K---LYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGG 197 (330)
T ss_pred HHHHHHHHHHhhccCCCCCcceeeeeeEecCC-E---EEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCC
Confidence 99 69999986 3677888887776442 2 99999999999999766 8999999999999999999999999
Q ss_pred CcccC--cccccc-ccccccCCCEEeeecCCCcccccceeeeeeecccccceeeecC
Q 010270 461 PLKDG--ETRLCG-LNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLAR 514 (514)
Q Consensus 461 ~v~~g--~~Rv~G-L~vsRslGD~~lK~~dg~v~seP~I~~~~~i~~~~~efLILA~ 514 (514)
.+... .+|++| |++||+|||+.+|... ++++|+|. ...+++.++ |||||+
T Consensus 198 ~v~~~~~~~Rv~G~LavsRa~GD~~~k~~~--v~a~Pei~-~~~~~~~de-FLiLas 250 (330)
T KOG0698|consen 198 RVSNWGGVWRVNGVLAVSRAFGDVELKSQG--VIAEPEIQ-QVKINSDDE-FLILAS 250 (330)
T ss_pred EEEEcCCcceEeceEEEeeecCCHHhcCCc--EecCCceE-EEEcCCCCc-EEEEeC
Confidence 99743 579999 9999999999999644 99999998 456666555 999996
No 5
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.97 E-value=3.9e-30 Score=269.46 Aligned_cols=187 Identities=25% Similarity=0.377 Sum_probs=153.5
Q ss_pred eeeeeeecchhhhhcCCccCCCCceEEEEcCCCCCCCceEEEEecCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 010270 298 PFGVGVASDPMALRRGAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQ 377 (514)
Q Consensus 298 ~~~vG~as~~~~~~r~G~R~~nED~~~v~~~~~~~~~~~lfgVfDGHGG~~aa~~as~~l~~~L~~~l~~~~~~e~~~~~ 377 (514)
.+.+|.+++ .|+|++|||++++.. .++..+|||||||||.++|+++++.+++.+.+...
T Consensus 21 ~~~~g~~s~------~G~R~~nED~~~v~~----~~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~----------- 79 (381)
T PTZ00224 21 IFRCASACV------NGYRESMEDAHLLYL----TDDWGFFGVFDGHVNDECSQYLARAWPQALEKEPE----------- 79 (381)
T ss_pred cEEEEEEeC------CCCCCCCCCeeEecc----CCCceEEEEEeCCCcHHHHHHHHHHHHHHHHhccc-----------
Confidence 567888888 489999999987642 23557999999999999999999999876643110
Q ss_pred ccHHHHHHHHHHHHHHHhhhc--cCCCceEEEEEEecCCCceEEEEEEeccceEEEEeCCeEEEcCCCCCCCCHHHHHHH
Q 010270 378 CDASDVLRDAFFQTEASMNHH--YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLRI 455 (514)
Q Consensus 378 ~~i~~~L~~af~~~d~~i~~~--~~G~TAtv~li~~~~~~~~~l~vANvGDSRa~L~r~g~~~~LT~DH~~~~~~E~~RI 455 (514)
....+.|+++|..+|..+.+. .+|||++++++..+. + +|||||||||||++++|++++||+||++.++.|+.||
T Consensus 80 ~~~~~~l~~a~~~~d~~i~~~~~~~GsTatv~lI~~~~-~---l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI 155 (381)
T PTZ00224 80 PMTDERMEELCLEIDEEWMDSGREGGSTGTFCVIMKDV-H---LQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRI 155 (381)
T ss_pred cccHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEECC-E---EEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHH
Confidence 112345888999999988765 579999998886442 2 8999999999999999999999999999999999999
Q ss_pred HHcCCCcccCcccccc-ccccccCCCEEeeecCC------CcccccceeeeeeecccccceeeecC
Q 010270 456 QETGEPLKDGETRLCG-LNLARMLGDKFLKQQDA------RFSAEPYISPVVHIDQASKAFALLAR 514 (514)
Q Consensus 456 ~~agg~v~~g~~Rv~G-L~vsRslGD~~lK~~dg------~v~seP~I~~~~~i~~~~~efLILA~ 514 (514)
++.||.+..+ |++| +.+||+|||..+|..+. .++++|+|. .+.+.+. + ||||||
T Consensus 156 ~~~gg~v~~~--Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~-~~~l~~~-D-~llLaS 216 (381)
T PTZ00224 156 EACGGRVVSN--RVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVT-HLTCQSN-D-FIILAC 216 (381)
T ss_pred HHccCEeccc--cccCceeeecccCCcccccccccccccCcceeeeEEE-EEECCCC-C-EEEEEC
Confidence 9999998866 9999 99999999998887641 377999998 4677754 3 999996
No 6
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.96 E-value=1.4e-28 Score=251.90 Aligned_cols=188 Identities=30% Similarity=0.385 Sum_probs=150.2
Q ss_pred CCCceEEEEcCCCCCCCceEEEEecCCCchHHHHHHHHHHHHHHHHHHhhhh-------hhhh-----------------
Q 010270 318 PMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSL-------KRER----------------- 373 (514)
Q Consensus 318 ~nED~~~v~~~~~~~~~~~lfgVfDGHGG~~aa~~as~~l~~~L~~~l~~~~-------~~e~----------------- 373 (514)
.-||+..+... ..+.+.|+||||||||++++++++++|...+...+.... .++.
T Consensus 84 ~~edrv~~~~s--~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~ 161 (390)
T KOG0700|consen 84 AEEDRVSVAVS--EENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSS 161 (390)
T ss_pred cccCcceeeee--ccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccc
Confidence 45677665433 257789999999999999999999999999986554421 1110
Q ss_pred hcc-cccHHHHHHHHHHHHHHHhhhc------------cCCCceEEEEEEecCCCceEEEEEEeccceEEEEe---CC--
Q 010270 374 LLS-QCDASDVLRDAFFQTEASMNHH------------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNV---DG-- 435 (514)
Q Consensus 374 ~~~-~~~i~~~L~~af~~~d~~i~~~------------~~G~TAtv~li~~~~~~~~~l~vANvGDSRa~L~r---~g-- 435 (514)
... ...+.++|.+||.++++.+... .+|+||+|.++.... |||||+|||||||.+ ++
T Consensus 162 ~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~-----LyVaN~GDSRAVLG~~~~~~~~ 236 (390)
T KOG0700|consen 162 ADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGD-----LYVANVGDSRAVLGVVENNGSW 236 (390)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCe-----EEEEecCcchhhhceecCCCCe
Confidence 001 3568899999999999999643 679999999887554 999999999999963 33
Q ss_pred -eEEEcCCCCCCCCHHHHHHHHHcCC----CcccCcccccc-ccccccCCCEEeeecC------------------CCcc
Q 010270 436 -KQIKMSEDHRIASYSERLRIQETGE----PLKDGETRLCG-LNLARMLGDKFLKQQD------------------ARFS 491 (514)
Q Consensus 436 -~~~~LT~DH~~~~~~E~~RI~~agg----~v~~g~~Rv~G-L~vsRslGD~~lK~~d------------------g~v~ 491 (514)
.++|||.||+..+++|++||+.... .+.+..||+.| |.+||+|||.+||.+. ++++
T Consensus 237 ~~A~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~Pylt 316 (390)
T KOG0700|consen 237 LVAVQLSTDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLT 316 (390)
T ss_pred EEEEecChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCcee
Confidence 5799999999999999999977654 23344589999 9999999999999553 4899
Q ss_pred cccceeeeeeecccccceeeecC
Q 010270 492 AEPYISPVVHIDQASKAFALLAR 514 (514)
Q Consensus 492 seP~I~~~~~i~~~~~efLILA~ 514 (514)
++|+|+ ..+|+++|+ |||||+
T Consensus 317 aeP~i~-~HrL~p~Dk-FLIlAS 337 (390)
T KOG0700|consen 317 AEPSIT-HHKLTPNDK-FLILAS 337 (390)
T ss_pred ccceEE-EEEcCCCCe-EEEEec
Confidence 999999 679999976 999996
No 7
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.95 E-value=1.5e-28 Score=246.01 Aligned_cols=104 Identities=39% Similarity=0.601 Sum_probs=96.9
Q ss_pred CCceEEEEEEecCCCceEEEEEEeccceEEEEeCCeEEEcCCCCCCCCHHHHHHHHHcCCCcc-cCcccccc-ccccccC
Q 010270 401 GCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLRIQETGEPLK-DGETRLCG-LNLARML 478 (514)
Q Consensus 401 G~TAtv~li~~~~~~~~~l~vANvGDSRa~L~r~g~~~~LT~DH~~~~~~E~~RI~~agg~v~-~g~~Rv~G-L~vsRsl 478 (514)
||||+||++..++ |||||.||||||++|+|+++-|+.||+|..+.|..||.++||.|. +| ||+| |+++|+|
T Consensus 331 GtTAvVcLv~g~~-----liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDG--RVNGGLNLSRA~ 403 (542)
T KOG0699|consen 331 GTTAVVCLVGGDK-----LIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDG--RVNGGLNLSRAF 403 (542)
T ss_pred CceEEEEEecCce-----EEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecc--eecCccchhhhh
Confidence 8999999997665 999999999999999999999999999999999999999999997 88 9999 9999999
Q ss_pred CCEEeeecCC------Ccccccceeeeeeecccccceeeec
Q 010270 479 GDKFLKQQDA------RFSAEPYISPVVHIDQASKAFALLA 513 (514)
Q Consensus 479 GD~~lK~~dg------~v~seP~I~~~~~i~~~~~efLILA 513 (514)
||.+||...- .|++-|+|. ++-|++.++ |+|+|
T Consensus 404 GDHaYK~N~~Lp~eEQMIsALPDiK-~l~lTpedE-FmVvA 442 (542)
T KOG0699|consen 404 GDHAYKKNQELPLEEQMISALPDIK-ILALTPEDE-FMVVA 442 (542)
T ss_pred hhhhhhcccCCChHHHHhhhcccce-eEeecCccc-EEEEE
Confidence 9999997653 789999998 888999876 99998
No 8
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.94 E-value=7.5e-27 Score=234.27 Aligned_cols=190 Identities=27% Similarity=0.364 Sum_probs=148.4
Q ss_pred eeeeeeecchhhhhcCCccCCCCceEEEEcCCCCCCCceEEEEecCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 010270 298 PFGVGVASDPMALRRGAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQ 377 (514)
Q Consensus 298 ~~~vG~as~~~~~~r~G~R~~nED~~~v~~~~~~~~~~~lfgVfDGHGG~~aa~~as~~l~~~L~~~l~~~~~~e~~~~~ 377 (514)
.+.++..++. ++.|.+|||++++.....+.. ..||+||||||||.++++||+.+++.|.+.+.........
T Consensus 7 ~~~~~~~s~~-----g~~R~~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~--- 77 (262)
T COG0631 7 SLKVAGLSDV-----GTVRKHNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLN--- 77 (262)
T ss_pred eeeeeeeccC-----CCccCCCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccc---
Confidence 3445555663 788999999999875333333 6799999999999999999999999999887765432210
Q ss_pred ccHHHHHHHHHHHHHHHhhhc------cCCCceEEEEEEecCCCceEEEEEEeccceEEEEeCCeEEEcCCCCCCCCHHH
Q 010270 378 CDASDVLRDAFFQTEASMNHH------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSE 451 (514)
Q Consensus 378 ~~i~~~L~~af~~~d~~i~~~------~~G~TAtv~li~~~~~~~~~l~vANvGDSRa~L~r~g~~~~LT~DH~~~~~~E 451 (514)
..+.+.|.+++..++..+... ..||++|++++...+++ +|||||||||||++++|..++||.||++.++.|
T Consensus 78 ~~~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~---l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~ 154 (262)
T COG0631 78 ESLEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNK---LYVANVGDSRAYLLRDGELKQLTEDHSLVNRLE 154 (262)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCe---EEEEEccCCeEEEEcCCceEEeccCCcHHHHHH
Confidence 116889999999999988764 35676666666666655 999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcccCccccccccccccCCCEEeeecCCCcccccceeeeeeecccccceeeecC
Q 010270 452 RLRIQETGEPLKDGETRLCGLNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLAR 514 (514)
Q Consensus 452 ~~RI~~agg~v~~g~~Rv~GL~vsRslGD~~lK~~dg~v~seP~I~~~~~i~~~~~efLILA~ 514 (514)
++|+...++...+. |.+ .+||++|+... .+|++. ...+.+. + |+|||+
T Consensus 155 ~~~~~~~~~~~~~~--~~~--~ltralG~~~~--------~~p~~~-~~~~~~~-d-~llL~S 202 (262)
T COG0631 155 QRGIITPEEARSHP--RRN--ALTRALGDFDL--------LEPDIT-ELELEPG-D-FLLLCS 202 (262)
T ss_pred HhcCCCHHHHHhCc--cch--hhhhhcCCCcc--------cceeEE-EEEcCCC-C-EEEEEC
Confidence 99886655555443 443 79999999865 568887 5677777 4 999986
No 9
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.91 E-value=7.8e-23 Score=200.80 Aligned_cols=185 Identities=36% Similarity=0.560 Sum_probs=147.6
Q ss_pred CCccCCCCceEEEEcCCCCCCCceEEEEecCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHH
Q 010270 313 GAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTE 392 (514)
Q Consensus 313 ~G~R~~nED~~~v~~~~~~~~~~~lfgVfDGHGG~~aa~~as~~l~~~L~~~l~~~~~~e~~~~~~~i~~~L~~af~~~d 392 (514)
+|.|..|||++++...... .+..+|+|||||||+..++++++.+.+.+.+.+..... .....+...|+++|..++
T Consensus 9 ~g~r~~neD~~~~~~~~~~-~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~~~~ 83 (254)
T cd00143 9 GGDRKTNEDAVVIKPNLNN-EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLT----LSEEDIEEALRKAFLRAD 83 (254)
T ss_pred CCCCCCCcceEEEeccCCC-CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccc----cchHHHHHHHHHHHHHHH
Confidence 6899999999998643211 36789999999999999999999999999887654431 112457788999999999
Q ss_pred HHhhhc--------cCCCceEEEEEEecCCCceEEEEEEeccceEEEEeCCeEEEcCCCCCCCCHHHHHHHHHcCCCccc
Q 010270 393 ASMNHH--------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLRIQETGEPLKD 464 (514)
Q Consensus 393 ~~i~~~--------~~G~TAtv~li~~~~~~~~~l~vANvGDSRa~L~r~g~~~~LT~DH~~~~~~E~~RI~~agg~v~~ 464 (514)
..+... ..|||++++++..+ . ++++|+||||+|++++++.+++|.||++.++.|+.||...++++..
T Consensus 84 ~~l~~~~~~~~~~~~~gtT~~~~~~~~~--~---l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~ 158 (254)
T cd00143 84 EEILEEAQDEPDDARSGTTAVVALIRGN--K---LYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSN 158 (254)
T ss_pred HHHHHhhhhccCCCCCCCcEEEEEEECC--E---EEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEEe
Confidence 988653 55777777777543 3 9999999999999999999999999999999999999999987642
Q ss_pred Ccccccc-ccccccCCCEEeeecCCCcccccceeeeeeecccccceeeecC
Q 010270 465 GETRLCG-LNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLAR 514 (514)
Q Consensus 465 g~~Rv~G-L~vsRslGD~~lK~~dg~v~seP~I~~~~~i~~~~~efLILA~ 514 (514)
. +..+ ..++|++|+..+|.. +..+|++. ...+.+..+ +++|+|
T Consensus 159 ~--~~~~~~~~t~~lG~~~~~~~---~~~~~~~~-~~~l~~~~d-~ill~S 202 (254)
T cd00143 159 G--RVPGVLAVTRALGDFDLKPG---VSAEPDVT-VVKLTEDDD-FLILAS 202 (254)
T ss_pred C--EEcCceeeccccCCccccCC---EEcCCeEE-EEEeCCCCc-EEEEEC
Confidence 2 4445 789999999988833 68889998 557733344 888876
No 10
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.90 E-value=1.8e-22 Score=199.10 Aligned_cols=183 Identities=38% Similarity=0.566 Sum_probs=148.2
Q ss_pred CCccCCCCceEEEEcCCCCCCCceEEEEecCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHH
Q 010270 313 GAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTE 392 (514)
Q Consensus 313 ~G~R~~nED~~~v~~~~~~~~~~~lfgVfDGHGG~~aa~~as~~l~~~L~~~l~~~~~~e~~~~~~~i~~~L~~af~~~d 392 (514)
+|.|..|||++++...+ ..+..+|+|||||||+.+|+++++.+.+.+.+........ ...+...|+++|..++
T Consensus 14 ~~~r~~neD~~~~~~~~--~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~ 86 (255)
T smart00332 14 QGVRKPMEDAHVITPDL--SDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDE-----LEDVEEALRKAFLKTD 86 (255)
T ss_pred CCCCCCCcceEEEeccC--CCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccc-----hhHHHHHHHHHHHHHH
Confidence 79999999999886432 2567899999999999999999999998887643322211 1347888999999999
Q ss_pred HHhhhc--------cCCCceEEEEEEecCCCceEEEEEEeccceEEEEeCCeEEEcCCCCCCCCHHHHHHHHHcCCCccc
Q 010270 393 ASMNHH--------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLRIQETGEPLKD 464 (514)
Q Consensus 393 ~~i~~~--------~~G~TAtv~li~~~~~~~~~l~vANvGDSRa~L~r~g~~~~LT~DH~~~~~~E~~RI~~agg~v~~ 464 (514)
.++... ..|||++++++..+. +|++|+||||+|++++++..++|+||++.++.|..||...++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-----l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~ 161 (255)
T smart00332 87 EEILEELESLEEDAGSGSTAVVALISGNK-----LYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVIN 161 (255)
T ss_pred HHHHHhhhhccCCCCCCccEEEEEEECCE-----EEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEEC
Confidence 988764 447777777776443 9999999999999999999999999999999999999999998765
Q ss_pred Ccccccc-ccccccCCCEEeeecCCCcccccceeeeeeecccccceeeecC
Q 010270 465 GETRLCG-LNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLAR 514 (514)
Q Consensus 465 g~~Rv~G-L~vsRslGD~~lK~~dg~v~seP~I~~~~~i~~~~~efLILA~ 514 (514)
+ +..+ ..+||++|+..+|.. ++++|++. ...+.+..+ +|||+|
T Consensus 162 ~--~~~~~~~lt~~~g~~~~~~~---i~~~p~~~-~~~~~~~~d-~ill~S 205 (255)
T smart00332 162 G--RVNGVLALSRAIGDFFLKPY---VSAEPDVT-VVELTEKDD-FLILAS 205 (255)
T ss_pred C--eECCeEecccccCCHhhcCC---eEeeeEEE-EEEecCCCc-EEEEEC
Confidence 5 6777 899999999888744 88999998 456533334 888876
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.88 E-value=3.3e-22 Score=220.95 Aligned_cols=189 Identities=21% Similarity=0.302 Sum_probs=131.9
Q ss_pred eeeeeeeecchhhhhcCCccCCCCceEEEEcCC-----CCC---CCceEEEEecCCCchHHHHHHHHHHHHHHHHHHhhh
Q 010270 297 IPFGVGVASDPMALRRGAKKLPMEDVCYYHWPL-----PGV---DKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDS 368 (514)
Q Consensus 297 ~~~~vG~as~~~~~~r~G~R~~nED~~~v~~~~-----~~~---~~~~lfgVfDGHGG~~aa~~as~~l~~~L~~~l~~~ 368 (514)
+.+.++.+++. |++|..|||++.+...+ +.. ....+|+|||||||+.+++.||+.+.+.|.+.+...
T Consensus 373 ~~l~~a~~Td~-----G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~ 447 (645)
T PRK14559 373 VSLEDAGRTDV-----GRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQH 447 (645)
T ss_pred eeEEEEEECCC-----CCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhh
Confidence 34667778884 45799999998765321 111 235799999999999999999999999988776643
Q ss_pred hhhhhhcccccHHHHHHHHHHHHHHHhhhc----------cCCCceEEEEEEecCCCceEEEEEEeccceEEEE-eCCeE
Q 010270 369 LKRERLLSQCDASDVLRDAFFQTEASMNHH----------YEGCTATVLLVWADGNANIFAQCANVGDSACVMN-VDGKQ 437 (514)
Q Consensus 369 ~~~e~~~~~~~i~~~L~~af~~~d~~i~~~----------~~G~TAtv~li~~~~~~~~~l~vANvGDSRa~L~-r~g~~ 437 (514)
...+ ...++.|+++|..+|..+.+. .+|||++++++..+ + +|+|||||||+|++ ++|+.
T Consensus 448 ~~~~-----~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~--~---l~ianVGDSRaYli~r~g~l 517 (645)
T PRK14559 448 WQDE-----LPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDT--Q---VAVAHVGDSRLYRVTRKGGL 517 (645)
T ss_pred hccc-----ccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECC--E---EEEEEecCceEEEEecCCeE
Confidence 2111 123567888999988888542 35777777777543 3 99999999999987 67899
Q ss_pred EEcCCCCCCCCHHHHHHHHHcCCCcccCccccccccccccCCCEEeeecCCCcccccceeeeeeecccccceeeecC
Q 010270 438 IKMSEDHRIASYSERLRIQETGEPLKDGETRLCGLNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLAR 514 (514)
Q Consensus 438 ~~LT~DH~~~~~~E~~RI~~agg~v~~g~~Rv~GL~vsRslGD~~lK~~dg~v~seP~I~~~~~i~~~~~efLILA~ 514 (514)
++||+||++.++..++.+.. .....|..+..+||++|+...+. .+|++. .+.+.++ + |++|||
T Consensus 518 ~QLT~DHs~~~~lv~~Gi~~-----~~a~~~p~~~~LTrALG~~~~~~------l~Pdi~-~~~L~~g-D-~lLLCS 580 (645)
T PRK14559 518 EQLTVDHEVGQREIQRGVEP-----QIAYARPDAYQLTQALGPRDNSA------IQPDIQ-FLEIEED-T-LLLLCS 580 (645)
T ss_pred EEeCCCCCHHHHHHHhCCCH-----HHHhcCcccceeeeccCCCCCCc------ccceEE-EEEcCCC-C-EEEEEC
Confidence 99999999876543333211 01111334467899999864332 358887 4677654 3 888875
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.86 E-value=6.6e-21 Score=189.73 Aligned_cols=212 Identities=27% Similarity=0.382 Sum_probs=160.5
Q ss_pred ccceeeeeeeeeeecchhhhhcCCccCCCCceEEEEcC------------------------------------CCCCCC
Q 010270 291 SETVSQIPFGVGVASDPMALRRGAKKLPMEDVCYYHWP------------------------------------LPGVDK 334 (514)
Q Consensus 291 ~~nq~~~~~~vG~as~~~~~~r~G~R~~nED~~~v~~~------------------------------------~~~~~~ 334 (514)
+.....+|+.+|+|..+++ |+...|||...+... +....+
T Consensus 68 ~r~~~rmp~~~gyae~ina----gkt~~nedqas~~~l~~~~~~gs~t~~~n~n~~~~~~~l~~g~~~~~k~~~~a~~~~ 143 (493)
T KOG1323|consen 68 PRFPHRMPLYVGYAEAINA----GKTVQNEDQASAKMLVLTQHQGSETRKRNSNENDDDPMLTPGGDDTVKSSMFAPRAD 143 (493)
T ss_pred cCccccCchhhhHHHHhhc----CccccccccccceEEEEecccCccccCCCCCccccCcCCCCCCCcchhhcccCCCCc
Confidence 3455678999999999987 999999998765310 011236
Q ss_pred ceEEEEecCCCchHHHHHHHHHHHHHHHHHHhhhhhh------------------------------hhhcc-cccHHHH
Q 010270 335 FGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKR------------------------------ERLLS-QCDASDV 383 (514)
Q Consensus 335 ~~lfgVfDGHGG~~aa~~as~~l~~~L~~~l~~~~~~------------------------------e~~~~-~~~i~~~ 383 (514)
..+|.+||||.|+.+|-.|++.+++.+.+.+.+.... |+-+. ..-+..+
T Consensus 144 ~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LViGA 223 (493)
T KOG1323|consen 144 GALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVIGA 223 (493)
T ss_pred ceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhhHHH
Confidence 6899999999999999999999999988876543221 00011 1125679
Q ss_pred HHHHHHHHHHHhhhc------cCCCceEEEEEEecCCCceEEEEEEeccceEEEEeCCeEEEcCCCCCCCCHHHHHHHHH
Q 010270 384 LRDAFFQTEASMNHH------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLRIQE 457 (514)
Q Consensus 384 L~~af~~~d~~i~~~------~~G~TAtv~li~~~~~~~~~l~vANvGDSRa~L~r~g~~~~LT~DH~~~~~~E~~RI~~ 457 (514)
|+.||..+|+.|..+ ..||||++++....+ +|+||.|||||++.|+++.++|+++.+|. .||+|++.
T Consensus 224 lEsAFqemDeqiarer~~~~~~GGCtalvvi~llGK-----lYvaNAGDsRAIlVrndeirplS~efTPe--tERqRlQ~ 296 (493)
T KOG1323|consen 224 LESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGK-----LYVANAGDSRAILVRNDEIRPLSKEFTPE--TERQRLQE 296 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccc-----eEEccCCCceEEEEecCCeeecccccCcH--HHHHHHHH
Confidence 999999999999765 679999988887665 99999999999999999999999999887 58888843
Q ss_pred c--------CCCcc---------------------------------------------cCcccccc-ccccccCCCEEe
Q 010270 458 T--------GEPLK---------------------------------------------DGETRLCG-LNLARMLGDKFL 483 (514)
Q Consensus 458 a--------gg~v~---------------------------------------------~g~~Rv~G-L~vsRslGD~~l 483 (514)
. |+... .-..|+.+ +.+||.+||..|
T Consensus 297 Laf~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~L 376 (493)
T KOG1323|consen 297 LAFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHL 376 (493)
T ss_pred HhhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCccee
Confidence 2 22111 00236677 899999999999
Q ss_pred eecCC------Ccccccceeeeeeeccc---ccceeeecC
Q 010270 484 KQQDA------RFSAEPYISPVVHIDQA---SKAFALLAR 514 (514)
Q Consensus 484 K~~dg------~v~seP~I~~~~~i~~~---~~efLILA~ 514 (514)
|..|. .+++.|+|+ +.++++- .|..+|+||
T Consensus 377 kv~dsnl~iKPFLssvPeV~-V~dl~q~e~~~DdVvilat 415 (493)
T KOG1323|consen 377 KVVDSNLSIKPFLSSVPEVR-VYDLRQYEHLTDDVVILAT 415 (493)
T ss_pred eeecCCcccchhhhcCCeeE-EEehhhhccCCCcEEEEec
Confidence 98774 789999998 6777643 123899986
No 13
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.68 E-value=1.3e-16 Score=126.99 Aligned_cols=68 Identities=38% Similarity=0.728 Sum_probs=62.0
Q ss_pred EEEcCCCCCCeEeCCcccccceeEEEEeCCcceEEEEeCCCCCceeeCCeecCCCCCCCCCCCCcEEccCCCeeeec
Q 010270 204 LTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLG 280 (514)
Q Consensus 204 ~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~Dl~StNGT~vNg~~i~~p~~~~~~~g~~~~L~~GD~I~lG 280 (514)
++|||++.|||+|+++.||++||.|.++.+ +.|+|+|++|+|||||||+++.+ ++++.|++||+|+||
T Consensus 1 ~~iGR~~~~di~l~~~~iSr~Ha~i~~~~~-~~~~i~d~~s~ngt~vng~~l~~--------~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCDIVLPDPSISRRHARISFDDD-GQFYIEDLGSTNGTFVNGQRLGP--------GEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSSEEETSTTSSTTSEEEEEETT-EEEEEEESSSSS-EEETTEEESS--------TSEEEE-TTEEEEET
T ss_pred CEEcCCCCCCEEECCHheeeeeeEEEEece-eeEEEEeCCCCCcEEECCEEcCC--------CCEEECCCCCEEEcC
Confidence 589999999999999999999999999986 46999999999999999999986 678999999999998
No 14
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.49 E-value=4.2e-13 Score=113.95 Aligned_cols=92 Identities=38% Similarity=0.643 Sum_probs=81.1
Q ss_pred eEEEEEEeCCCCCeEEEcccCCCCCCcEEEcCCCCC-CeEeCCcccccceeEEEEeCCcceEEEEeCCCCCceeeCCeec
Q 010270 177 CLSLEVVSGPSRGIRCSVQSANASRLPLTLGRVSPS-DVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPI 255 (514)
Q Consensus 177 ~~~L~v~~G~~~g~~~~l~~~~~~~~~~~IGR~~~~-di~l~d~~VSr~Ha~I~~~~~~~~~~l~Dl~StNGT~vNg~~i 255 (514)
++.|.+..++..+..+.|.... .++|||++.| ++.++++.||+.||.|.++.+ ..|++.|..|+|||+||++++
T Consensus 1 ~~~L~~~~~~~~~~~~~l~~~~----~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~-~~~~~~~~~s~~g~~vn~~~~ 75 (102)
T cd00060 1 VPRLVVLSGDASGRRYYLDPGG----TYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGD-GGVVLIDLGSTNGTFVNGQRV 75 (102)
T ss_pred CeEEEEecCCCceeEEEECCCC----eEEECcCCCcCCEEcCCCCeeCcceEEEEcCC-CCEEEEECCCCCCeEECCEEC
Confidence 3678888887778899998831 7999999999 999999999999999999983 269999999999999999999
Q ss_pred CCCCCCCCCCCCcEEccCCCeeeecc
Q 010270 256 NHPDSGSRHWGKPMELTSGDIITLGT 281 (514)
Q Consensus 256 ~~p~~~~~~~g~~~~L~~GD~I~lG~ 281 (514)
.. +.+..|.+||.|.+|.
T Consensus 76 ~~--------~~~~~l~~gd~i~ig~ 93 (102)
T cd00060 76 SP--------GEPVRLRDGDVIRLGN 93 (102)
T ss_pred CC--------CCcEECCCCCEEEECC
Confidence 85 4679999999999995
No 15
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.43 E-value=2.3e-13 Score=151.90 Aligned_cols=114 Identities=22% Similarity=0.302 Sum_probs=86.7
Q ss_pred cccCCCCCCcccccCC---CceEEEEEEeCCCC-CeEEEcccCCCCCCcEEEcCCCCCCe-----EeCCcccccceeEEE
Q 010270 159 GIDRFPEFLPKAIADQ---RSCLSLEVVSGPSR-GIRCSVQSANASRLPLTLGRVSPSDV-----LLKDSEVSGKHALIN 229 (514)
Q Consensus 159 ~~~~~~~~~p~~~~~~---~~~~~L~v~~G~~~-g~~~~l~~~~~~~~~~~IGR~~~~di-----~l~d~~VSr~Ha~I~ 229 (514)
.++++..|+-.+.+.. ...|+|+....... ...+.|... +..|++|||.+.||+ +|+++.||+.||+|.
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~l~~~--~~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~ 589 (668)
T PLN02927 512 ADDRLREWFEDDDALERTIKGEWYLIPHGDDCCVSETLCLTKD--EDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVI 589 (668)
T ss_pred hhHHHHHHhcccHHHHHhhcCCeEEEecCCCCcccceeeeecC--CCCCeEecCCCCcCCCCceEEecCCccChhHeEEE
Confidence 3455555665555333 34599999754433 245777432 234999999999995 999999999999999
Q ss_pred EeCCcceEEEEeCCCCCceeeCCee---cC-CCCCCCCCCCCcEEccCCCeeeeccce
Q 010270 230 WNPNKLKWELVDMGSLNGTLLNSQP---IN-HPDSGSRHWGKPMELTSGDIITLGTTS 283 (514)
Q Consensus 230 ~~~~~~~~~l~Dl~StNGT~vNg~~---i~-~p~~~~~~~g~~~~L~~GD~I~lG~~~ 283 (514)
++++ .|+|+||+|+|||||||++ +. .| +.++.|++||+|.||+..
T Consensus 590 ~~~~--~~~~~Dl~S~nGT~v~~~~~~r~~~~p-------~~~~~l~~~d~I~~g~~~ 638 (668)
T PLN02927 590 YKDG--AFFLMDLRSEHGTYVTDNEGRRYRATP-------NFPARFRSSDIIEFGSDK 638 (668)
T ss_pred EECC--EEEEEECCCCCccEEeCCCCceEecCC-------CCceEeCCCCEEEeCCCc
Confidence 9976 6999999999999997766 54 12 567999999999999953
No 16
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.43 E-value=6.5e-13 Score=140.57 Aligned_cols=94 Identities=33% Similarity=0.526 Sum_probs=81.1
Q ss_pred EEEEEeC----CCCCeEEEcccCCCCCCcEEEcCCCCCCeEeCCcc--cccceeEEEEeCCcceEEEEeCCCCCceeeC-
Q 010270 179 SLEVVSG----PSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSE--VSGKHALINWNPNKLKWELVDMGSLNGTLLN- 251 (514)
Q Consensus 179 ~L~v~~G----~~~g~~~~l~~~~~~~~~~~IGR~~~~di~l~d~~--VSr~Ha~I~~~~~~~~~~l~Dl~StNGT~vN- 251 (514)
.|.|+.. +..+..+.+... ..+|||+++|+++|+|+. ||++||+|.++++ .|+|+|+ |+||||||
T Consensus 2 ~L~v~n~~~l~~g~~~~~~f~~~-----~~~IGR~~~~d~~l~d~~~~VS~~Ha~I~~~~g--~~~l~Dl-StNGT~VN~ 73 (396)
T TIGR03354 2 VLTVLNAHQLTPGIAAQKTFGTN-----GGTIGRSEDCDWVLPDPERHVSGRHARIRYRDG--AYLLTDL-STNGVFLNG 73 (396)
T ss_pred EEEEeccccCCCCcceEEEECCC-----CEEEecCCCCCEEeCCCCCCcchhhcEEEEECC--EEEEEEC-CCCCeEECC
Confidence 4555533 335678888887 689999999999999998 9999999999975 6999999 99999999
Q ss_pred -CeecCCCCCCCCCCCCcEEccCCCeeeeccceeEEEe
Q 010270 252 -SQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQ 288 (514)
Q Consensus 252 -g~~i~~p~~~~~~~g~~~~L~~GD~I~lG~~~~~~~~ 288 (514)
|+++.+ +.++.|++||+|+||.+.+++..
T Consensus 74 sg~~l~~--------~~~~~L~~GD~I~iG~~~lrv~~ 103 (396)
T TIGR03354 74 SGSPLGR--------GNPVRLEQGDRLRLGDYEIRVSL 103 (396)
T ss_pred CCCCCCC--------CCceEcCCCCEEEECCEEEEEEe
Confidence 888885 56799999999999999988765
No 17
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.34 E-value=9.5e-12 Score=120.07 Aligned_cols=160 Identities=19% Similarity=0.208 Sum_probs=86.0
Q ss_pred CCccCCCCceEEEEcCCCCCCCceEEEEecCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHH-
Q 010270 313 GAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQT- 391 (514)
Q Consensus 313 ~G~R~~nED~~~v~~~~~~~~~~~lfgVfDGHGG~~aa~~as~~l~~~L~~~l~~~~~~e~~~~~~~i~~~L~~af~~~- 391 (514)
.|++.+|||++.+... .+..+++|+||+||...++.+|+.+.+.+.+.+......+.......+...+.+.....
T Consensus 6 ~~~~~~nqD~~~~~~~----~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (212)
T PF13672_consen 6 RGRGAPNQDAFGIRTD----DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEILSIV 81 (212)
T ss_dssp -TTSSS--EEEEEE-T----CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCEEeeeC----CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 5888999999986532 44567799999999999999999999999888776554332110111222222222211
Q ss_pred ----HH---HhhhccCCCceEEEEEEecCCCceEEEEEEeccceEE-EEeCCeEEEcCCCCCCCCHHHHHHHHHcCCCcc
Q 010270 392 ----EA---SMNHHYEGCTATVLLVWADGNANIFAQCANVGDSACV-MNVDGKQIKMSEDHRIASYSERLRIQETGEPLK 463 (514)
Q Consensus 392 ----d~---~i~~~~~G~TAtv~li~~~~~~~~~l~vANvGDSRa~-L~r~g~~~~LT~DH~~~~~~E~~RI~~agg~v~ 463 (514)
.. .......+||++++++. .+. ++++|+||||+| +.++|+...+|.+|+.....+ -....
T Consensus 82 ~~~~~~~~~~~~~~~~~tTl~~~v~~--~~~---~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~~~~~-------~~~~~ 149 (212)
T PF13672_consen 82 RAFQSAKQADLELRDYGTTLLALVID--PDK---VYIFNIGDSRIYVIRRNGEIQQLTDDHSGEYPNQ-------TRSLT 149 (212)
T ss_dssp ----HHHHHSGGGTT-EE-EEEEEEE--TTE---EEEEEESS-EEEEEEETTEEEE-S---BHHHHHC-------TTSCC
T ss_pred hhhhhhhhccccccccCceEEEEEEE--CCE---EEEEEECCCeEEEEECCCEEEEcCCCccchhhhh-------hhccC
Confidence 01 11111445666666654 333 899999999996 469999999999997221111 11111
Q ss_pred -cCcccccc-ccccccCCCEEeeecCC
Q 010270 464 -DGETRLCG-LNLARMLGDKFLKQQDA 488 (514)
Q Consensus 464 -~g~~Rv~G-L~vsRslGD~~lK~~dg 488 (514)
.....-.- -.+...-||.++.|+||
T Consensus 150 ~~~~~~~~~~~~~~~~~~d~ilL~SDG 176 (212)
T PF13672_consen 150 GDDPEPDVQYGSIPLEEGDVILLCSDG 176 (212)
T ss_dssp HHCCCTETEEEEEE--TT-EEEEE-HH
T ss_pred ccccccCCeEEEEEcCCCCEEEEECcC
Confidence 00000011 12345779999999999
No 18
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.32 E-value=8.3e-12 Score=118.74 Aligned_cols=70 Identities=37% Similarity=0.544 Sum_probs=65.8
Q ss_pred cEEEcCCCCCCeEeCCcccccceeEEEEeCCcceEEEEeCCCCCceeeCCeecCCCCCCCCCCCCcEEccCCCeeeeccc
Q 010270 203 PLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTT 282 (514)
Q Consensus 203 ~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~Dl~StNGT~vNg~~i~~p~~~~~~~g~~~~L~~GD~I~lG~~ 282 (514)
.++|||++++++++++..|||+||.|.++++ .|+++|++|+|||||||+++.+ ...|++||.|.||..
T Consensus 90 ~~tigr~~~~~i~~~~~~vSR~Ha~l~~~~~--~~~~~d~~S~nGt~vn~~~v~~----------~~~l~~gd~i~i~~~ 157 (191)
T COG1716 90 VTTIGRDPDNDIVLDDDVVSRRHAELRREGN--EVFLEDLGSTNGTYVNGEKVRQ----------RVLLQDGDVIRLGGT 157 (191)
T ss_pred eEEeccCCCCCEEcCCCccccceEEEEEeCC--ceEEEECCCCcceEECCeEccC----------cEEcCCCCEEEECcc
Confidence 5899999999999999999999999999987 5999999999999999999983 389999999999999
Q ss_pred ee
Q 010270 283 SS 284 (514)
Q Consensus 283 ~~ 284 (514)
..
T Consensus 158 ~~ 159 (191)
T COG1716 158 LA 159 (191)
T ss_pred ce
Confidence 87
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.30 E-value=6.3e-12 Score=140.31 Aligned_cols=196 Identities=17% Similarity=0.248 Sum_probs=152.5
Q ss_pred eeeeeeeeecchhhhhcCCccCCCCceEEEEcCCCCCCCceEEEEecCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 010270 296 QIPFGVGVASDPMALRRGAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLL 375 (514)
Q Consensus 296 ~~~~~vG~as~~~~~~r~G~R~~nED~~~v~~~~~~~~~~~lfgVfDGHGG~~aa~~as~~l~~~L~~~l~~~~~~e~~~ 375 (514)
..-+.+|++.. .|+|-.+-=+......|. .+....||.|||-+-.....++...+..++.+.++....
T Consensus 519 ~~~~t~Gv~~~------~gqrnk~c~~~~~v~nf~-~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~----- 586 (1081)
T KOG0618|consen 519 AFLWTYGVAGV------SGQRNKVCSRAVWVENFF-LNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGN----- 586 (1081)
T ss_pred eeheeeccchh------cccccchhhhhhhhhhcc-cCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccC-----
Confidence 34566777765 366655443333222332 245679999999999999999999999998887765542
Q ss_pred ccccHHHHHHHHHHHHHHHhhhc--cCCCceEEEEEEecC---CCceEEEEEEeccceEEEEeCCeEEEcCCCC-CCCCH
Q 010270 376 SQCDASDVLRDAFFQTEASMNHH--YEGCTATVLLVWADG---NANIFAQCANVGDSACVMNVDGKQIKMSEDH-RIASY 449 (514)
Q Consensus 376 ~~~~i~~~L~~af~~~d~~i~~~--~~G~TAtv~li~~~~---~~~~~l~vANvGDSRa~L~r~g~~~~LT~DH-~~~~~ 449 (514)
-.+.|+.+|...+.++.+. ..|..++.+.+..+. ....++.+||+|+|.+++|++|+..++|+-. -...+
T Consensus 587 ----et~~mr~~fl~~~rklg~~g~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~ 662 (1081)
T KOG0618|consen 587 ----ETEQMRNTFLRLNRKLGEEGQVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDR 662 (1081)
T ss_pred ----hHHHHHHHHHHHhhhhhhhhccccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCH
Confidence 2344999999999999776 667777777776543 1223478999999999999999999998775 45599
Q ss_pred HHHHHHHHcCCCcc-cCcccccc-ccccccCCCEEeeecCCCcccccceeeeeeecccccceeeecC
Q 010270 450 SERLRIQETGEPLK-DGETRLCG-LNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLAR 514 (514)
Q Consensus 450 ~E~~RI~~agg~v~-~g~~Rv~G-L~vsRslGD~~lK~~dg~v~seP~I~~~~~i~~~~~efLILA~ 514 (514)
+|.+||...+|++. ++ +++| ...||++|..++.+. +.+.|+|. .+.+++.+| |||+|.
T Consensus 663 eE~~RI~~~~g~i~ed~--k~ngvt~~tR~iG~~~l~P~---v~p~Phv~-~~~Lt~qdE-~LIvgn 722 (1081)
T KOG0618|consen 663 EEYKRIVDSKGFITEDN--KLNGVTSSTRAIGPFSLFPH---VLPDPHVS-VVILTEQDE-FLIVGN 722 (1081)
T ss_pred HHHHHHHHhcCeecCCC--eeeceeeeeeeccccccccc---ccCCCcee-eEecccCce-EEEEcc
Confidence 99999999999998 55 8999 899999999999887 99999998 567888766 999984
No 20
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=99.28 E-value=1.2e-11 Score=134.42 Aligned_cols=121 Identities=21% Similarity=0.334 Sum_probs=101.2
Q ss_pred CCCCCCcccccCCCceEEEEEEeCCCCCeEEEcccCCCCCCcEEEcCCCCCCeEeCCcccccceeEEEEeCCcce-----
Q 010270 162 RFPEFLPKAIADQRSCLSLEVVSGPSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLK----- 236 (514)
Q Consensus 162 ~~~~~~p~~~~~~~~~~~L~v~~G~~~g~~~~l~~~~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~----- 236 (514)
+..+.+|.|.+++...+.|+++.+...-..+.+.... .+++||...||+.+.++.|||.||.+.+...+..
T Consensus 141 ~~py~vppw~~P~~~~~~lEvlKeg~iiet~~l~~~~----~~~fgr~~~cD~~~eHpsISr~h~vlQy~~~~~~~p~~s 216 (793)
T KOG1881|consen 141 AAPYEVPPWSGPPAAIFQLEVLKEGAIIETEDLKGAA----ACLFGRLGGCDVALEHPSISRFHAVLQYKASGPDDPCAS 216 (793)
T ss_pred CCcccCCCCCCCcccchhhhhhccCceeeeeecccce----eEEecccCCCccccccCcccccceeeeccCCCCCccccC
Confidence 5577888888888888999999776655566666542 7899999999999999999999999999654433
Q ss_pred ----EEEEeCCCCCceeeCCeecCCCCCCCCCCCCcEEccCCCeeeeccceeEEEeeeccce
Q 010270 237 ----WELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQITSETV 294 (514)
Q Consensus 237 ----~~l~Dl~StNGT~vNg~~i~~p~~~~~~~g~~~~L~~GD~I~lG~~~~~~~~~~~~nq 294 (514)
|+|.|||||+|||+|..++.+ +.| ..++-|++++||+.++.|..-.+.++
T Consensus 217 ~~~g~~i~dlgsThgt~~NK~rvpp-----k~y---ir~~Vg~v~~fggsTrl~i~Qgp~eD 270 (793)
T KOG1881|consen 217 NGEGWYIYDLGSTHGTFLNKDRVPP-----KVY---IRDRVGHVARFGGSTRLYIFQGPEED 270 (793)
T ss_pred CCCceEEeeccccccceeccccCCC-----cch---hhhhHHHHHHhcCceEEEEeeCCCcC
Confidence 999999999999999999985 344 88999999999999988877666554
No 21
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=99.18 E-value=4.4e-11 Score=89.85 Aligned_cols=50 Identities=38% Similarity=0.648 Sum_probs=46.6
Q ss_pred EEcCCC-CCCeEeCCcccccceeEEEEeCCcceEEEEeCCCCCceeeCCeec
Q 010270 205 TLGRVS-PSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPI 255 (514)
Q Consensus 205 ~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~Dl~StNGT~vNg~~i 255 (514)
+|||.+ .|+++++++.||+.||.|.++.++ .|+|.|++|+|||||||+++
T Consensus 2 ~iGr~~~~~~i~~~~~~vs~~H~~i~~~~~~-~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 2 TIGRSSEDCDIQLPGPSISRRHAEIVYDGGG-RFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred EeCCCCCCCCEEeCCCCcchhHcEEEECCCC-eEEEEECCCCCCeeECCEEC
Confidence 799999 999999999999999999998863 59999999999999999875
No 22
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.05 E-value=3.9e-10 Score=117.03 Aligned_cols=95 Identities=25% Similarity=0.311 Sum_probs=75.5
Q ss_pred EEEEEEeCCC----CCeEEEcccCCCCCCcEEEcCCCCCCeEeCCc--ccccceeEEEEeCCcceEEEEeCCCCCceeeC
Q 010270 178 LSLEVVSGPS----RGIRCSVQSANASRLPLTLGRVSPSDVLLKDS--EVSGKHALINWNPNKLKWELVDMGSLNGTLLN 251 (514)
Q Consensus 178 ~~L~v~~G~~----~g~~~~l~~~~~~~~~~~IGR~~~~di~l~d~--~VSr~Ha~I~~~~~~~~~~l~Dl~StNGT~vN 251 (514)
+.|.++.... .-.+..+..+ ..+|||+++||.+|+|+ .||+.||+|.++++ .|+|.|. |.||||||
T Consensus 3 lsL~vtn~~~l~sG~~aq~~f~~~-----~g~IGrs~dcdW~i~D~~~~VS~~Hc~I~~~dg--~f~L~Dt-S~g~l~VN 74 (430)
T COG3456 3 LSLQVTNAQKLESGKAAQKLFDRG-----GGVIGRSPDCDWQIDDPERFVSKQHCTISYRDG--GFCLTDT-SNGGLLVN 74 (430)
T ss_pred eEEEEeccccCCCchhhhhhhhcC-----CcccccCCCCCccccCcccccchhheEEEecCC--eEEEEec-CCCceeec
Confidence 4566654322 2235555555 56999999999999975 69999999999986 5999998 79999999
Q ss_pred CeecCCCCCCCCCCCCc-EEccCCCeeeeccceeEEEe
Q 010270 252 SQPINHPDSGSRHWGKP-MELTSGDIITLGTTSSIHVQ 288 (514)
Q Consensus 252 g~~i~~p~~~~~~~g~~-~~L~~GD~I~lG~~~~~~~~ 288 (514)
|..+.. |.. .+|+.||+|.||.+.+++.-
T Consensus 75 gs~~~~--------g~~~~RLqqGd~i~iG~y~i~V~l 104 (430)
T COG3456 75 GSDLPL--------GEGSARLQQGDEILIGRYIIRVHL 104 (430)
T ss_pred ccccCC--------CCCccccccCCEEeeccEEEEEEe
Confidence 988765 555 89999999999999877643
No 23
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.02 E-value=1.6e-09 Score=109.08 Aligned_cols=161 Identities=20% Similarity=0.216 Sum_probs=103.6
Q ss_pred CCCCceEEEEcCCCCCCCceEEEEecCCCchHH-----HHHHHHHHHHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHH
Q 010270 317 LPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAA-----AKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQT 391 (514)
Q Consensus 317 ~~nED~~~v~~~~~~~~~~~lfgVfDGHGG~~a-----a~~as~~l~~~L~~~l~~~~~~e~~~~~~~i~~~L~~af~~~ 391 (514)
..-||++++.. .....+.|||||.||+.- +.| |+.|.....+..+... +...++...|.+||.++
T Consensus 89 ~~GEDa~Fvss----~~~~~v~GVADGVGGWa~~GiDpg~f-S~eLM~~ce~~v~~~~-----~~~~~P~~lL~~ay~~l 158 (330)
T KOG1379|consen 89 KGGEDAWFVSS----NPHAIVMGVADGVGGWAEYGIDPGAF-SRELMSNCERLVQNSD-----FNPSDPVNLLEKAYAEL 158 (330)
T ss_pred CCCCcceeecc----CcccceEEEccccchHhhcCcCHHHH-HHHHHHHHHHHhcccc-----cCCCChHHHHHHHHHHH
Confidence 35689999853 256789999999999873 333 4444444444433332 22347888999999777
Q ss_pred HHHhhhccCCCceEEEEEEecCCCceEEEEEEeccceEEEEeCCeEEEcCCCCC--CCCH-------HHHHHHHHcCCCc
Q 010270 392 EASMNHHYEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHR--IASY-------SERLRIQETGEPL 462 (514)
Q Consensus 392 d~~i~~~~~G~TAtv~li~~~~~~~~~l~vANvGDSRa~L~r~g~~~~LT~DH~--~~~~-------~E~~RI~~agg~v 462 (514)
-+.-.-....|||+++++.....+ ||+||+|||...+.|+|++++-|.... ..-+ ++. ..++
T Consensus 159 ~~~~~~~vGSSTAcI~~l~~~~~~---Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQLs~~p~~~------~~~~ 229 (330)
T KOG1379|consen 159 KSQKVPIVGSSTACILALDRENGK---LHTANLGDSGFLVVREGKVVFRSPEQQHYFNTPYQLSSPPEGY------SSYI 229 (330)
T ss_pred hhcCCCCCCcceeeeeeeecCCCe---EEEeeccCcceEEEECCEEEEcCchheeccCCceeeccCCccc------cccc
Confidence 664433356788888888754444 999999999999999999988877532 2111 111 1112
Q ss_pred ccCcccccc-ccccccCCCEEeeecCCCc--cccccee
Q 010270 463 KDGETRLCG-LNLARMLGDKFLKQQDARF--SAEPYIS 497 (514)
Q Consensus 463 ~~g~~Rv~G-L~vsRslGD~~lK~~dg~v--~seP~I~ 497 (514)
.+. ++.-. ..+.-..||..+..+||.+ +++-+|.
T Consensus 230 ~d~-p~~ad~~~~~v~~GDvIilATDGlfDNl~e~~Il 266 (330)
T KOG1379|consen 230 SDV-PDSADVTSFDVQKGDVIILATDGLFDNLPEKEIL 266 (330)
T ss_pred cCC-ccccceEEEeccCCCEEEEecccccccccHHHHH
Confidence 221 11111 4556778999999999933 3344443
No 24
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=99.01 E-value=3.7e-10 Score=108.87 Aligned_cols=108 Identities=22% Similarity=0.244 Sum_probs=84.1
Q ss_pred CcccccCCCceEEEEEEeCCCCCeEEEcccCCCCCCcEEEcCCC-CCCeEeCCcccccceeEEEEeCCc-----------
Q 010270 167 LPKAIADQRSCLSLEVVSGPSRGIRCSVQSANASRLPLTLGRVS-PSDVLLKDSEVSGKHALINWNPNK----------- 234 (514)
Q Consensus 167 ~p~~~~~~~~~~~L~v~~G~~~g~~~~l~~~~~~~~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~----------- 234 (514)
-|..+..+...|.|...++...+....+.... .+.+||.. -.||.+++++.|++||+|.+..-.
T Consensus 163 eppearkP~kRwrLy~fk~~e~l~~l~iHrqs----~yL~gRerkIaDi~idhpScSKQHaviQyR~v~~~r~dGt~grr 238 (293)
T KOG1882|consen 163 EPPEARKPKKRWRLYPFKCYEVLPVLYIHRQS----CYLDGRERKIADIPIDHPSCSKQHAVIQYRLVEFTRADGTVGRR 238 (293)
T ss_pred CCchhcCchhheecccccCCcccchheeeeee----eeecCceeeeeccCCCCccccccceeeeeeecccccCCCcccee
Confidence 45555556667999999887777555565543 58999965 688999999999999999985321
Q ss_pred ceEEEEeCCCCCceeeCCeecCCCCCCCCCCCCcEEccCCCeeeeccceeEE
Q 010270 235 LKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIH 286 (514)
Q Consensus 235 ~~~~l~Dl~StNGT~vNg~~i~~p~~~~~~~g~~~~L~~GD~I~lG~~~~~~ 286 (514)
-..||.||+|+||||||.+.|.+ ..-++|..+|+|+||-..-.+
T Consensus 239 vkpYiiDLgS~NgTfLNnk~Iep--------qRYyEL~ekDvlkfgfs~rEy 282 (293)
T KOG1882|consen 239 VKPYIIDLGSGNGTFLNNKVIEP--------QRYYELREKDVLKFGFSSREY 282 (293)
T ss_pred eeeEEEecCCCCcceecCcccCc--------hheeeeecCceeeeccchHHH
Confidence 24789999999999999999984 234899999999999554333
No 25
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=98.86 E-value=4.8e-08 Score=92.79 Aligned_cols=140 Identities=19% Similarity=0.073 Sum_probs=89.5
Q ss_pred CCCCceEEEEcCCCCCCCceEEEEecCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHHHhh
Q 010270 317 LPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTEASMN 396 (514)
Q Consensus 317 ~~nED~~~v~~~~~~~~~~~lfgVfDGHGG~~aa~~as~~l~~~L~~~l~~~~~~e~~~~~~~i~~~L~~af~~~d~~i~ 396 (514)
....|.|.+... .++..+|+|+||||+...|.+++..+...+.+.+.... . +..++..++..+.
T Consensus 15 ~~~GD~~~~~~~---~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~---------~----~~~~l~~~n~~l~ 78 (193)
T smart00331 15 QVGGDFYDVVKL---PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGI---------S----LSQILERLNRAIY 78 (193)
T ss_pred hcCccEEEEEEe---CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCC---------C----HHHHHHHHHHHHH
Confidence 356688876543 34478999999999988999999999888876544321 1 3334455555554
Q ss_pred hc---cCCCceEEEEEEecCCCceEEEEEEeccceEEEEe-CCeEEEcCCCCCCCCHHHHHHHHHcCCCcccCccccccc
Q 010270 397 HH---YEGCTATVLLVWADGNANIFAQCANVGDSACVMNV-DGKQIKMSEDHRIASYSERLRIQETGEPLKDGETRLCGL 472 (514)
Q Consensus 397 ~~---~~G~TAtv~li~~~~~~~~~l~vANvGDSRa~L~r-~g~~~~LT~DH~~~~~~E~~RI~~agg~v~~g~~Rv~GL 472 (514)
.. ..|||++++.+....++ ++++|+||+++|+++ ++..++.+.+..+ .-|...+. .+.--
T Consensus 79 ~~~~~~~~~T~~~~~id~~~~~---l~~~~~Gd~~~~~~~~~~~~~~~~~~~~~-----------~lG~~~~~--~~~~~ 142 (193)
T smart00331 79 ENGEDGMFATLFLALYDFAGGT---LSYANAGHSPPYLLRADGGLVEDLDDLGA-----------PLGLEPDV--EVDVR 142 (193)
T ss_pred hcCCCCcEEEEEEEEEECCCCE---EEEEeCCCCceEEEECCCCeEEEcCCCCc-----------eeeeCCCC--cceeE
Confidence 43 45677766666444444 889999999999998 6666666665211 00111000 01112
Q ss_pred cccccCCCEEeeecCC
Q 010270 473 NLARMLGDKFLKQQDA 488 (514)
Q Consensus 473 ~vsRslGD~~lK~~dg 488 (514)
...-.-||.++.++||
T Consensus 143 ~~~l~~gd~l~l~TDG 158 (193)
T smart00331 143 ELTLEPGDLLLLYTDG 158 (193)
T ss_pred EEeeCCCCEEEEECCC
Confidence 3346679999999998
No 26
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=98.51 E-value=7.3e-08 Score=95.95 Aligned_cols=114 Identities=22% Similarity=0.299 Sum_probs=92.9
Q ss_pred CCCcccccCCCceEEEEEEeCCCCC-eEEEcccCCCCCCcEEEcCCC-CCCeEeCCcccccceeEEEEeCCcceEEEEeC
Q 010270 165 EFLPKAIADQRSCLSLEVVSGPSRG-IRCSVQSANASRLPLTLGRVS-PSDVLLKDSEVSGKHALINWNPNKLKWELVDM 242 (514)
Q Consensus 165 ~~~p~~~~~~~~~~~L~v~~G~~~g-~~~~l~~~~~~~~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~Dl 242 (514)
..+|+|+..++..+.|.+..+...- ..+.+.+. .+.+||.. .||++|++..+||.||.+.+......++|.||
T Consensus 5 ~~~p~wA~kpp~g~hldv~k~d~li~kl~iddkr-----~y~Fgrn~q~~df~idh~scSrvhaa~vyhkhl~~~~lidl 79 (337)
T KOG1880|consen 5 FDPPSWAGKPPAGLHLDVVKGDKLIQKLIIDDKR-----RYLFGRNHQTCDFVIDHASCSRVHAALVYHKHLSRIFLIDL 79 (337)
T ss_pred CCCCCcccCCCCCCceeeeecchhHHHHHhhhhh-----hhhhccCCCccceEeecchhhhhHhhhhhhhccceEEEEEc
Confidence 3578888888888899888775432 33333333 68999987 89999999999999999999877667999999
Q ss_pred CCCCceeeCCeecCCCCCCCCCCCCcEEccCCCeeeeccceeEEEeeec
Q 010270 243 GSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQITS 291 (514)
Q Consensus 243 ~StNGT~vNg~~i~~p~~~~~~~g~~~~L~~GD~I~lG~~~~~~~~~~~ 291 (514)
+|++|||+-..++.. .+++.|..|..+.||.++..+..-..
T Consensus 80 ~s~hgtf~g~~rL~~--------~~p~~l~i~~~~~fgasTr~y~lr~k 120 (337)
T KOG1880|consen 80 GSTHGTFLGNERLEP--------HKPVQLEIGSTFHFGASTRIYLLREK 120 (337)
T ss_pred cCCcceeeeeeeecc--------CCCccccCCceEEEeccceeeeeecc
Confidence 999999999999975 47899999999999998877654443
No 27
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=98.03 E-value=1.8e-05 Score=84.79 Aligned_cols=94 Identities=19% Similarity=0.292 Sum_probs=78.4
Q ss_pred EEEEEEeCCCCCeEEEcccCCCCCCcEEEc-CCCCCCeEeCCcccccceeEEEEeCCcceEEEEeCCCCCceeeCCeecC
Q 010270 178 LSLEVVSGPSRGIRCSVQSANASRLPLTLG-RVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPIN 256 (514)
Q Consensus 178 ~~L~v~~G~~~g~~~~l~~~~~~~~~~~IG-R~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~Dl~StNGT~vNg~~i~ 256 (514)
|.|.++.|+..|..++|..+ .++|| +.++|||++.|+.||++|++|.++.+ .+.+.+ +..+.++||.++.
T Consensus 1 ~~lrvl~G~~~G~~~~L~~g-----~~~iG~~~~~~di~L~d~~~~~~h~~l~v~~~--~~~l~~--~~~~~~~~g~~~~ 71 (410)
T TIGR02500 1 WKLRVLSGPHRGAELPLPEG-----NLVLGTDAADCDIVLSDGGIAAVHVSLHVRLE--GVTLAG--AVEPAWEEGGVLP 71 (410)
T ss_pred CEEEEecCCCCCcEEECCCC-----ceEeccCCCCcEEEeCCCCccchheEEEEcCc--eEEEec--CCcceeECCcccc
Confidence 47899999999999999998 78999 99999999999999999999999976 477876 4677899994443
Q ss_pred CCCCCCCCCCCcEEccCCCeeeeccceeEEEe
Q 010270 257 HPDSGSRHWGKPMELTSGDIITLGTTSSIHVQ 288 (514)
Q Consensus 257 ~p~~~~~~~g~~~~L~~GD~I~lG~~~~~~~~ 288 (514)
. .+...|..+-.+.+|+..|.+..
T Consensus 72 ~--------~~g~~l~~~~~l~~g~~~~~~g~ 95 (410)
T TIGR02500 72 D--------EEGTPLPSGTPLLVAGVAFALGE 95 (410)
T ss_pred c--------CCCCccCCCCceecceeEEeccC
Confidence 2 23456888888999988887744
No 28
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=98.02 E-value=0.00011 Score=84.54 Aligned_cols=156 Identities=14% Similarity=0.083 Sum_probs=99.4
Q ss_pred eeeeeeeeecchhhhhcCCccCCCCceEEEEcCCCCCCCceEEEEecCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 010270 296 QIPFGVGVASDPMALRRGAKKLPMEDVCYYHWPLPGVDKFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLL 375 (514)
Q Consensus 296 ~~~~~vG~as~~~~~~r~G~R~~nED~~~v~~~~~~~~~~~lfgVfDGHGG~~aa~~as~~l~~~L~~~l~~~~~~e~~~ 375 (514)
+....+|++... ++.+..+.|.|.+... .+...+++|+||+|....|..++..+.+.+.+.+.....
T Consensus 549 ~~~~~~g~a~~~-----k~g~~vsGD~y~~~~l---~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~----- 615 (764)
T TIGR02865 549 KYHVSTGVARAA-----KDGELVSGDSYSFGKL---SAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGFD----- 615 (764)
T ss_pred ceeehhhHHHhc-----CCCCcccCceEEEEEE---CCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCCC-----
Confidence 444555555442 4677789999987543 244578999999997777777788887777665443221
Q ss_pred ccccHHHHHHHHHHHHHHHhhhc---cCCCceEEEEEEecCCCceEEEEEEeccceEEEEeCCeEEEcCCCCCCCCHHHH
Q 010270 376 SQCDASDVLRDAFFQTEASMNHH---YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSER 452 (514)
Q Consensus 376 ~~~~i~~~L~~af~~~d~~i~~~---~~G~TAtv~li~~~~~~~~~l~vANvGDSRa~L~r~g~~~~LT~DH~~~~~~E~ 452 (514)
. ..++..+|..+... ...+|+.++++.....+ +.++|+|+++.|+.|+++..+++..+-|.
T Consensus 616 ----~----~~ai~~lN~~L~~~~~~~~faTl~l~~IDl~~g~---~~~~~aG~~p~~i~r~~~v~~i~s~~lPl----- 679 (764)
T TIGR02865 616 ----R----EVAIKTVNSILSLRSTDEKFSTLDLSVIDLYTGQ---AEFVKVGAVPSFIKRGAKVEVIRSSNLPI----- 679 (764)
T ss_pred ----H----HHHHHHHHHHHHhCCCCCeEEEEEEEEEECCCCe---EEEEecCCCceEEEECCEEEEecCCCcee-----
Confidence 1 33555556555432 23455555555433333 78999999999999999998887654442
Q ss_pred HHHHHcCCCcccCccccccccccccCCCEEeeecCCC
Q 010270 453 LRIQETGEPLKDGETRLCGLNLARMLGDKFLKQQDAR 489 (514)
Q Consensus 453 ~RI~~agg~v~~g~~Rv~GL~vsRslGD~~lK~~dg~ 489 (514)
|...+. .+.-....-.-||..+.++||.
T Consensus 680 -------Gil~~~--~~~~~~~~L~~GD~Lll~SDGv 707 (764)
T TIGR02865 680 -------GILDEV--DVELVRKKLKNGDLIVMVSDGV 707 (764)
T ss_pred -------EeccCC--ccceEEEEeCCCCEEEEECCCC
Confidence 111111 1111234567899999999994
No 29
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=0.00017 Score=75.64 Aligned_cols=77 Identities=31% Similarity=0.321 Sum_probs=63.7
Q ss_pred cEEEcCCCCCCeEeCCcccccceeEEEEe-------------CCcceEEEEeCCCCCceeeCCeecCCCCCCCCCCCCcE
Q 010270 203 PLTLGRVSPSDVLLKDSEVSGKHALINWN-------------PNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPM 269 (514)
Q Consensus 203 ~~~IGR~~~~di~l~d~~VSr~Ha~I~~~-------------~~~~~~~l~Dl~StNGT~vNg~~i~~p~~~~~~~g~~~ 269 (514)
.++.||.+.||..+....+|.+|..|..- .....+++.|. |+||||||...+.. +...
T Consensus 65 ~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~Dh-S~nGT~VN~e~i~k--------~~~r 135 (475)
T KOG0615|consen 65 EFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDH-SRNGTFVNDEMIGK--------GLSR 135 (475)
T ss_pred eEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEec-ccCcccccHhHhhc--------cccc
Confidence 79999999999999988888888877543 22356999998 89999999999986 6678
Q ss_pred EccCCCeeeeccceeEEEe
Q 010270 270 ELTSGDIITLGTTSSIHVQ 288 (514)
Q Consensus 270 ~L~~GD~I~lG~~~~~~~~ 288 (514)
.|++||+|.||......+.
T Consensus 136 ~lkN~dei~is~p~~~~~v 154 (475)
T KOG0615|consen 136 ILKNGDEISISIPALKIFV 154 (475)
T ss_pred cccCCCEEEeccchhheee
Confidence 8999999999987655443
No 30
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=96.97 E-value=0.019 Score=54.10 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=73.1
Q ss_pred CceEEEEecCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHHHhhhc----cCCCceEEEEE
Q 010270 334 KFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTEASMNHH----YEGCTATVLLV 409 (514)
Q Consensus 334 ~~~lfgVfDGHGG~~aa~~as~~l~~~L~~~l~~~~~~e~~~~~~~i~~~L~~af~~~d~~i~~~----~~G~TAtv~li 409 (514)
+..++.|+|+.|-.-.|...+..+...+........ ++ ...+..+++.+... ...+|++++.+
T Consensus 3 ~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~---------~p----~~~l~~ln~~l~~~~~~~~~~~t~~~~~~ 69 (193)
T PF07228_consen 3 GRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGL---------DP----EELLEALNRRLYRDLKGDNRYATACYAII 69 (193)
T ss_dssp TEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTT---------SH----HHHHHHHHHHHHHHTTTTSTTEEEEEEEE
T ss_pred CEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCC---------CH----HHHHHHHHHHHHHHhhhccccceEEEEEe
Confidence 456788999999555666666666666665543222 12 33444455555322 24455555555
Q ss_pred EecCCCceEEEEEEeccceEEEEeC--CeEEEcCCCCCCCCHHHHHHHHHcCCCcccCccccccccccccCCCEEeeecC
Q 010270 410 WADGNANIFAQCANVGDSACVMNVD--GKQIKMSEDHRIASYSERLRIQETGEPLKDGETRLCGLNLARMLGDKFLKQQD 487 (514)
Q Consensus 410 ~~~~~~~~~l~vANvGDSRa~L~r~--g~~~~LT~DH~~~~~~E~~RI~~agg~v~~g~~Rv~GL~vsRslGD~~lK~~d 487 (514)
....+. ++++|+|++.++++++ +....+.....+- |...+. .+.-..+.-.-||..+.++|
T Consensus 70 d~~~~~---l~~~~aG~~~~l~~~~~~~~~~~~~~~~~~l------------G~~~~~--~~~~~~~~l~~gd~l~l~TD 132 (193)
T PF07228_consen 70 DPETGT---LTYANAGHPPPLLLRPGGREIEQLESEGPPL------------GIFEDI--DYQEQEIQLEPGDRLLLYTD 132 (193)
T ss_dssp ETTTTE---EEEEEESSSEEEEEETTCTEEEEETCSSBBC------------SSSCTT--CEEEEEEE--TTEEEEEECH
T ss_pred cccceE---EEEeCCCCCCEEEEeccccceeecccCccce------------eeeccc--cccceEEEeccccEEEEeCC
Confidence 444433 8899999999999998 4555554444332 111111 11113455667999999999
Q ss_pred C
Q 010270 488 A 488 (514)
Q Consensus 488 g 488 (514)
|
T Consensus 133 G 133 (193)
T PF07228_consen 133 G 133 (193)
T ss_dssp H
T ss_pred C
Confidence 8
No 31
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.59 E-value=0.006 Score=70.09 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=61.8
Q ss_pred EEEcccCCCCCCcEEEcCCC---CCCeEeCCcccccceeEEEEeCCcceEEEEeCCCCCceeeCCeecCCCCCCCCCCCC
Q 010270 191 RCSVQSANASRLPLTLGRVS---PSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGK 267 (514)
Q Consensus 191 ~~~l~~~~~~~~~~~IGR~~---~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~Dl~StNGT~vNg~~i~~p~~~~~~~g~ 267 (514)
.+.|..+ ..+|||.+ ..||+|....|--+||.|.-+++.+-+.|.-. --.-|||||+.|..
T Consensus 471 lY~ikeG-----~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~~g~~~vtl~p~-e~aetyVNGk~v~e---------- 534 (1221)
T KOG0245|consen 471 LYYIKEG-----ETRVGREDASSRQDIVLSGQLIREQHCSIRNEGGNDVVTLEPC-EDAETYVNGKLVTE---------- 534 (1221)
T ss_pred EEEeccC-----ceecCCCCcccCCceEecchhhhhhceEEEecCCCceEEeccC-CccceeEccEEcCC----------
Confidence 5566666 56999965 78999999999999999999876432445544 35679999999984
Q ss_pred cEEccCCCeeeeccce
Q 010270 268 PMELTSGDIITLGTTS 283 (514)
Q Consensus 268 ~~~L~~GD~I~lG~~~ 283 (514)
|..|++||+|.+|+..
T Consensus 535 p~qL~~GdRiilG~~H 550 (1221)
T KOG0245|consen 535 PTQLRSGDRIILGGNH 550 (1221)
T ss_pred cceeccCCEEEEcCce
Confidence 5899999999999964
No 32
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=95.94 E-value=0.032 Score=63.74 Aligned_cols=95 Identities=18% Similarity=0.155 Sum_probs=74.2
Q ss_pred eEEEEEE--eCCCCCeEEEcccCCCCCCcEEEcCCC--CCCeEeCCcccccceeEEEEeCCcceEEEEeCCCCCceeeCC
Q 010270 177 CLSLEVV--SGPSRGIRCSVQSANASRLPLTLGRVS--PSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNS 252 (514)
Q Consensus 177 ~~~L~v~--~G~~~g~~~~l~~~~~~~~~~~IGR~~--~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~Dl~StNGT~vNg 252 (514)
..+|+.+ +|....+.+.|..+ +.-+|... ++.|.|..+.|-.+||.|..-.+ ...+.-..--.-|||||
T Consensus 356 lPvLve~s~dG~~s~~ri~L~~~-----vtEVGs~~~~~~~iqLfGP~IqprHc~it~meG--VvTvTP~~~DA~t~VnG 428 (1629)
T KOG1892|consen 356 LPVLVELSPDGSDSRKRIRLQLS-----VTEVGSEKLDDNSIQLFGPGIQPRHCDITNMEG--VVTVTPRSMDAETYVNG 428 (1629)
T ss_pred CcEEEEEcCCCCCcceeEEeccC-----ceeccccccCCcceeeeCCCCCccccchhhccc--eEEecccccchhhhccc
Confidence 3456666 45555578888887 67899987 45799999999999999998764 67788774446799999
Q ss_pred eecCCCCCCCCCCCCcEEccCCCeeeeccc-eeEEEe
Q 010270 253 QPINHPDSGSRHWGKPMELTSGDIITLGTT-SSIHVQ 288 (514)
Q Consensus 253 ~~i~~p~~~~~~~g~~~~L~~GD~I~lG~~-~~~~~~ 288 (514)
.+|.+ +..|++|+.|.||.. .|+|+.
T Consensus 429 h~isq----------ttiL~~G~~v~fGa~hsfkF~d 455 (1629)
T KOG1892|consen 429 HRISQ----------TTILQSGMKVQFGASHSFKFVD 455 (1629)
T ss_pred eecch----------hhhhccCCEEEeccceeEEecC
Confidence 99985 478999999999986 445544
No 33
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=95.71 E-value=0.029 Score=60.65 Aligned_cols=93 Identities=18% Similarity=0.310 Sum_probs=73.1
Q ss_pred EEEEEeCCCCCeEEEcccCCCCCCcEEEcCCC-CCCeEeC------CcccccceeEEEEeCCcceEEEEeCCCCCceeeC
Q 010270 179 SLEVVSGPSRGIRCSVQSANASRLPLTLGRVS-PSDVLLK------DSEVSGKHALINWNPNKLKWELVDMGSLNGTLLN 251 (514)
Q Consensus 179 ~L~v~~G~~~g~~~~l~~~~~~~~~~~IGR~~-~~di~l~------d~~VSr~Ha~I~~~~~~~~~~l~Dl~StNGT~vN 251 (514)
.+-++.|.. .++.+.+. .+++||+. ++.|-|+ ...|||+.|.|...++ |.|+|..+| .--.|||
T Consensus 432 AiAvL~Gr~--skh~mrk~-----EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~-GsF~IkNlG-K~~I~vn 502 (547)
T KOG2293|consen 432 AIAVLYGRF--SKHYMRKK-----EVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKND-GSFFIKNLG-KRSILVN 502 (547)
T ss_pred eeEEEechh--hHhhhcCc-----ceEeeccCCCcceeeeccccCccceeeccceeEEeccC-CcEEeccCc-ceeEEeC
Confidence 455666652 24556665 78999987 4444443 3469999999999887 489999997 6889999
Q ss_pred CeecCCCCCCCCCCCCcEEccCCCeeeeccceeEEEe
Q 010270 252 SQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQ 288 (514)
Q Consensus 252 g~~i~~p~~~~~~~g~~~~L~~GD~I~lG~~~~~~~~ 288 (514)
|.++-+ |+.+.|++..+|++-+-+|.|..
T Consensus 503 g~~l~~--------gq~~~L~~nclveIrg~~FiF~~ 531 (547)
T KOG2293|consen 503 GGELDR--------GQKVILKNNCLVEIRGLRFIFEI 531 (547)
T ss_pred CccccC--------CceEEeccCcEEEEccceEEEee
Confidence 999987 88899999999999999887754
No 34
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=94.52 E-value=0.071 Score=59.03 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=65.4
Q ss_pred eEEEcccCCCCCCcEEEcCCCCCCeEeCCcccccceeEEEEeCCcceEEEEeCCCCCceeeCCeecCCCCCCCCCCCCcE
Q 010270 190 IRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPM 269 (514)
Q Consensus 190 ~~~~l~~~~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~Dl~StNGT~vNg~~i~~p~~~~~~~g~~~ 269 (514)
..+.|..+ .++|||.++-.| .|...||+..++..+-+++.+.+.-|| .|.+-|||+.+.+ |...
T Consensus 25 ~~~~~~~~-----~~~~gr~pet~i--~d~~cs~~qv~l~a~~~~~~v~~k~lg-~np~~~~~~~~~~--------~~~~ 88 (526)
T TIGR01663 25 HFIHLDAG-----ALFLGRGPETGI--RDRKCSKRQIELQADLEKATVALKQLG-VNPCGTGGLELKP--------GGEG 88 (526)
T ss_pred CeeccCCC-----ceEEccCccccc--chhhhchhhheeeecccCceEEEEEcc-CCCcccCceEecC--------CCee
Confidence 45555554 688999987654 599999999999998887778899997 6999999999987 7889
Q ss_pred EccCCCeeeecccee
Q 010270 270 ELTSGDIITLGTTSS 284 (514)
Q Consensus 270 ~L~~GD~I~lG~~~~ 284 (514)
.|++||.+.|=.-..
T Consensus 89 ~l~~g~~l~~v~~~~ 103 (526)
T TIGR01663 89 ELGHGDLLEIVNGLH 103 (526)
T ss_pred eecCCCEEEEecccc
Confidence 999999998865443
No 35
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=88.60 E-value=1 Score=52.17 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=60.9
Q ss_pred cEEEcCCCCCCeEeCCcccccceeEEEEeCCcceEEEEeCCCCCceeeCCeecCCCCCCCCCCCCcEEccCCCeeeeccc
Q 010270 203 PLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTT 282 (514)
Q Consensus 203 ~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~Dl~StNGT~vNg~~i~~p~~~~~~~g~~~~L~~GD~I~lG~~ 282 (514)
...||-..+-||++..-.+=++||.|..+.++ ..++.-+.++ -+||||..+.. +..|.+||.|-.|.-
T Consensus 468 ~tlig~~~~~~i~l~glgi~p~h~vidI~~dg-~l~~~p~~~~-R~~VNGs~v~~----------~t~L~~GdRiLwGnn 535 (1714)
T KOG0241|consen 468 HTLIGLFKSQDIQLSGLGIQPKHCVIDIESDG-ELRLTPLLNA-RSCVNGSLVCS----------TTQLWHGDRILWGNN 535 (1714)
T ss_pred ceeeccccCcceeeecCcccCccceeeeccCC-cEEecccccc-eeeecCceecc----------ccccccCceEEeccc
Confidence 46899888999999999999999999999874 5888888554 89999998873 489999999999998
Q ss_pred eeE
Q 010270 283 SSI 285 (514)
Q Consensus 283 ~~~ 285 (514)
.|.
T Consensus 536 HFF 538 (1714)
T KOG0241|consen 536 HFF 538 (1714)
T ss_pred ceE
Confidence 653
No 36
>PF15102 TMEM154: TMEM154 protein family
Probab=82.73 E-value=1.3 Score=40.70 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhcccCccCCCCCCC
Q 010270 13 LLMLILILLFIFIACKPWRFFFPSYRS 39 (514)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (514)
+..||++++++++.||+||.-..|++.
T Consensus 68 LvlLLl~vV~lv~~~kRkr~K~~~ss~ 94 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYYKRKRTKQEPSSQ 94 (146)
T ss_pred HHHHHHHHHHheeEEeecccCCCCccc
Confidence 334445556777779999976544333
No 37
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=75.62 E-value=15 Score=39.22 Aligned_cols=90 Identities=11% Similarity=0.144 Sum_probs=65.6
Q ss_pred ceEEEEEEeCCCCCeEEEcccCCCCCCcEEEcCCCCCCeEeCCcccccceeEEEEeCCcceEEEEeCCCCCceeeCCeec
Q 010270 176 SCLSLEVVSGPSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPI 255 (514)
Q Consensus 176 ~~~~L~v~~G~~~g~~~~l~~~~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~Dl~StNGT~vNg~~i 255 (514)
..++|..+.|+..|+...+..+ .+++|- .+|||.++=+. ..-..+..+++ +.++.- +.--++|||.+-
T Consensus 3 ~~~Klr~Lng~L~GrEl~Lp~G-----~~tlG~-~gcDi~lpL~~--~~~~~L~i~e~--gi~l~~--~~~~vwVnG~~~ 70 (395)
T PRK15367 3 SSWKIRFLGHVLQGREVWLNEG-----NLSLGE-KGCDICIPLTI--NEKIILREQAD--SLFVDA--GKARVRVNGRRF 70 (395)
T ss_pred cceeeeecCCcccCcEEecCCC-----ceeecC-CCceEEEECCC--CCEEEEEEcCC--cEEEec--CCceEEECCEEc
Confidence 3689999999999999999998 799997 45999987544 44444566655 355531 234678999877
Q ss_pred CCCCCCCCCCCCcEEccCCCeeeeccceeEEE
Q 010270 256 NHPDSGSRHWGKPMELTSGDIITLGTTSSIHV 287 (514)
Q Consensus 256 ~~p~~~~~~~g~~~~L~~GD~I~lG~~~~~~~ 287 (514)
.. + ..|--+-.|.+.+..|.+-
T Consensus 71 ~~--------~--~~LPl~q~Ie~aG~~~vlG 92 (395)
T PRK15367 71 NP--------N--KPLPSSGVLQVAGVAIAFG 92 (395)
T ss_pred CC--------C--CCCCCcchhhhcceEEEec
Confidence 53 2 3477777888888877663
No 38
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=63.25 E-value=3.4 Score=37.10 Aligned_cols=18 Identities=11% Similarity=0.665 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 010270 10 FTVLLMLILILLFIFIAC 27 (514)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~ 27 (514)
||++|+++++|+|++|+|
T Consensus 4 l~~iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYC 21 (130)
T ss_pred eHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 39
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=61.28 E-value=5.4 Score=34.34 Aligned_cols=31 Identities=23% Similarity=0.499 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccCccCCCCCCC
Q 010270 9 VFTVLLMLILILLFIFIACKPWRFFFPSYRS 39 (514)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (514)
.|++..+++.+|+++..-|.-||.++.|++-
T Consensus 22 GVv~~al~~SlLIalaaKC~~~~k~~~SY~H 52 (102)
T PF15176_consen 22 GVVVTALVTSLLIALAAKCPVWYKYLASYRH 52 (102)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhcccc
Confidence 3444444445555555559999988777643
No 40
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=53.98 E-value=9.1 Score=30.46 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=19.1
Q ss_pred CceeeCCeecCCCCCCCCCCCCcEEccCCCeeeeccceeEE
Q 010270 246 NGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIH 286 (514)
Q Consensus 246 NGT~vNg~~i~~p~~~~~~~g~~~~L~~GD~I~lG~~~~~~ 286 (514)
+..+|||+...+ ....|++||+|.+++..+.+
T Consensus 33 g~V~VNGe~e~r---------rg~Kl~~GD~V~~~~~~~~V 64 (65)
T PF13275_consen 33 GEVKVNGEVETR---------RGKKLRPGDVVEIDGEEYRV 64 (65)
T ss_dssp HHHEETTB-------------SS----SSEEEEETTEEEEE
T ss_pred CceEECCEEccc---------cCCcCCCCCEEEECCEEEEE
Confidence 457899987764 34789999999998887654
No 41
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=50.69 E-value=21 Score=26.56 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccCc
Q 010270 9 VFTVLLMLILILLFIFIACKPWR 31 (514)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (514)
.+.+++|+++.++++++||+|=+
T Consensus 13 ~~~l~~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 13 SWGLLYLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCc
Confidence 35566777888999999998865
No 42
>PRK11507 ribosome-associated protein; Provisional
Probab=50.08 E-value=22 Score=28.73 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=24.8
Q ss_pred CceeeCCeecCCCCCCCCCCCCcEEccCCCeeeeccceeEE
Q 010270 246 NGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIH 286 (514)
Q Consensus 246 NGT~vNg~~i~~p~~~~~~~g~~~~L~~GD~I~lG~~~~~~ 286 (514)
+...|||+.-.+ ....|++||+|.+.+..+.+
T Consensus 37 g~V~VNGeve~r---------RgkKl~~GD~V~~~g~~~~v 68 (70)
T PRK11507 37 GQVKVDGAVETR---------KRCKIVAGQTVSFAGHSVQV 68 (70)
T ss_pred CceEECCEEecc---------cCCCCCCCCEEEECCEEEEE
Confidence 568899986654 33679999999999977654
No 43
>PRK10693 response regulator of RpoS; Provisional
Probab=48.72 E-value=2.2e+02 Score=29.04 Aligned_cols=49 Identities=8% Similarity=-0.052 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhhc-cC-CCceEEEEEEecCCCceEEEEEEeccceEEEEeCCeE
Q 010270 386 DAFFQTEASMNHH-YE-GCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQ 437 (514)
Q Consensus 386 ~af~~~d~~i~~~-~~-G~TAtv~li~~~~~~~~~l~vANvGDSRa~L~r~g~~ 437 (514)
..+..+|..+... .. ..|++.+++....+. +..+|.|-...++..++..
T Consensus 209 ~~l~~lN~~l~~~~~~~~~t~~~~~~d~~~~~---l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 209 ALLKQVNHLLRQANLPGQFPLLVGYYHRELKN---LILVSAGLNATLNTGEHQV 259 (303)
T ss_pred HHHHHHHHHHHhcCCCceeeEEEEEEEcCCCe---EEEEeCCCCCEEecCCeEE
Confidence 3445556665554 11 245554554433333 7788999999886444433
No 44
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=47.84 E-value=13 Score=26.93 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=18.7
Q ss_pred CceeeCCeecCCCCCCCCCCCCcEEccCCCee
Q 010270 246 NGTLLNSQPINHPDSGSRHWGKPMELTSGDII 277 (514)
Q Consensus 246 NGT~vNg~~i~~p~~~~~~~g~~~~L~~GD~I 277 (514)
++.+|||+.+..|. ..+++||+|
T Consensus 26 g~V~VNg~~v~~~~---------~~v~~~d~I 48 (48)
T PF01479_consen 26 GRVKVNGKVVKDPS---------YIVKPGDVI 48 (48)
T ss_dssp TTEEETTEEESSTT---------SBESTTEEE
T ss_pred CEEEECCEEEcCCC---------CCCCCcCCC
Confidence 57899999998643 788899986
No 45
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=47.82 E-value=17 Score=32.58 Aligned_cols=31 Identities=13% Similarity=0.278 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCccCCCC
Q 010270 6 SIVVFTVLLMLILILLFIFIACKPWRFFFPS 36 (514)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (514)
.++++|+++.||+|++++++.-|+=|....+
T Consensus 3 ~l~~iii~~i~l~~~~~~~~~rRR~r~G~~P 33 (130)
T PF12273_consen 3 VLFAIIIVAILLFLFLFYCHNRRRRRRGLQP 33 (130)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 4678889999999999999999998876555
No 46
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=47.59 E-value=18 Score=27.61 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=19.7
Q ss_pred CceeeCCeecCCCCCCCCCCCCcEEccCCCeeee
Q 010270 246 NGTLLNSQPINHPDSGSRHWGKPMELTSGDIITL 279 (514)
Q Consensus 246 NGT~vNg~~i~~p~~~~~~~g~~~~L~~GD~I~l 279 (514)
+..+|||+.+.+| ...|+.||.|.+
T Consensus 34 G~V~VNg~~~~~~---------~~~l~~Gd~v~i 58 (59)
T TIGR02988 34 NEVLVNGELENRR---------GKKLYPGDVIEI 58 (59)
T ss_pred CCEEECCEEccCC---------CCCCCCCCEEEe
Confidence 5688999988543 278999999975
No 47
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=47.22 E-value=19 Score=33.85 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCccCC
Q 010270 8 VVFTVLLMLILILLFIFIACKPWRFFF 34 (514)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (514)
...|.||+.+..++++.|++|-||.--
T Consensus 95 ~R~~~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 95 KRALYVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345667777777777777777777553
No 48
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=46.75 E-value=19 Score=31.34 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCccC
Q 010270 8 VVFTVLLMLILILLFIFIACKPWRFF 33 (514)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (514)
...+++.|+.+++.+++|++||-++-
T Consensus 53 ~~~~~~~~~w~~~A~~ly~~RP~s~R 78 (103)
T PF11027_consen 53 NSMFMMMMLWMVLAMALYLLRPSSLR 78 (103)
T ss_pred ccHHHHHHHHHHHHHHHHHcCchhhc
Confidence 34677888888889999999986543
No 49
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=42.73 E-value=23 Score=34.97 Aligned_cols=20 Identities=10% Similarity=0.235 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 010270 9 VFTVLLMLILILLFIFIACK 28 (514)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (514)
-+++.+++|||++++.++|-
T Consensus 17 NiaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 17 NIAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred HHHHHHHHHHHHHHhhhhee
Confidence 37777777888777777653
No 50
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=41.11 E-value=13 Score=26.75 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCc
Q 010270 7 IVVFTVLLMLILILLFIFIACKPWR 31 (514)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (514)
.+++|.+.-+..+.++.+|++|.|-
T Consensus 10 VIlVF~lVglv~i~iva~~iYRKw~ 34 (43)
T PF08114_consen 10 VILVFCLVGLVGIGIVALFIYRKWQ 34 (43)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHH
Confidence 3457777778888999999999995
No 51
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=39.07 E-value=44 Score=27.24 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=25.9
Q ss_pred CceeeCCeecCCCCCCCCCCCCcEEccCCCeeeeccceeEEE
Q 010270 246 NGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHV 287 (514)
Q Consensus 246 NGT~vNg~~i~~p~~~~~~~g~~~~L~~GD~I~lG~~~~~~~ 287 (514)
+..+|||+.-.+ ....|.+||+|.+.+..+.+.
T Consensus 37 g~V~vNGe~EtR---------RgkKlr~gd~V~i~~~~~~v~ 69 (73)
T COG2501 37 GEVKVNGEVETR---------RGKKLRDGDVVEIPGQRYQVV 69 (73)
T ss_pred CeEEECCeeeec---------cCCEeecCCEEEECCEEEEEE
Confidence 578999987664 336899999999999876543
No 52
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=36.13 E-value=48 Score=23.18 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=14.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHh
Q 010270 4 RESIVVFTVLLMLILILLFIFI 25 (514)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~ 25 (514)
-|.+..++.++|+++.++-+++
T Consensus 9 fekiT~v~v~lM~i~tvg~v~~ 30 (35)
T PF13253_consen 9 FEKITMVVVWLMLILTVGSVVA 30 (35)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777888777665554
No 53
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=35.99 E-value=48 Score=23.59 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCc
Q 010270 6 SIVVFTVLLMLILILLFIFIACKPWR 31 (514)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (514)
+|++-+++-|.++++.+..|||..-|
T Consensus 7 aIIv~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45666667777777888888876444
No 54
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=35.54 E-value=49 Score=25.97 Aligned_cols=27 Identities=11% Similarity=0.258 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCccC
Q 010270 7 IVVFTVLLMLILILLFIFIACKPWRFF 33 (514)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (514)
+-++.++.|.+.++..++||++|-+..
T Consensus 10 a~a~~t~~~~l~fiavi~~ayr~~~K~ 36 (60)
T COG4736 10 ADAWGTIAFTLFFIAVIYFAYRPGKKG 36 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 345777778888888999999998855
No 55
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=35.19 E-value=61 Score=31.00 Aligned_cols=61 Identities=25% Similarity=0.306 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhhcccCccCCCCCCCCcccccCcccCCccccchhhhccccCccccccCCC
Q 010270 10 FTVLLMLILILLFIFIACKPWRFFFPSYRSRSIIKSGELERPLVSDDEALVRDQSNDLTRNYDLE 74 (514)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (514)
+++.|-++++++.++.+.|=|||++...+..+..+.++..++...... .-+-+..|.||+.
T Consensus 9 ~~tpl~~al~~~~l~~~~kl~~~~~r~~~~~~~~~~~~~P~~~~P~~~----dfT~eEL~~ydGs 69 (183)
T KOG1110|consen 9 FFTPLALALLIFLLFVGLKLSRFKFRRDSEKSDGSTEEPPKESLPKVR----DFTVEELRQYDGS 69 (183)
T ss_pred hhhhHHHHHHHHHHHhheeeeeeeccccccccccCCCCCCccCCCccc----ccCHHHHHhcCCC
Confidence 344444445555556778888886665566666666655443222211 2223445667766
No 56
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=35.09 E-value=40 Score=25.19 Aligned_cols=22 Identities=18% Similarity=0.461 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh
Q 010270 5 ESIVVFTVLLMLILILLFIFIA 26 (514)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (514)
.+..+++.++++++++++++|+
T Consensus 14 ~nk~a~~gl~il~~~vl~ai~~ 35 (56)
T PF12911_consen 14 RNKLAVIGLIILLILVLLAIFA 35 (56)
T ss_pred hCchHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777776
No 57
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=34.68 E-value=27 Score=39.59 Aligned_cols=68 Identities=19% Similarity=0.058 Sum_probs=54.0
Q ss_pred CcccccceeEEEEeCCcceEEEEeCCCCCceeeCCeecCC-CCCCCCCCCCcEEccCCCeeeeccceeEEEeeecc
Q 010270 218 DSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINH-PDSGSRHWGKPMELTSGDIITLGTTSSIHVQITSE 292 (514)
Q Consensus 218 d~~VSr~Ha~I~~~~~~~~~~l~Dl~StNGT~vNg~~i~~-p~~~~~~~g~~~~L~~GD~I~lG~~~~~~~~~~~~ 292 (514)
...+++.|+.|.++...++|++.+.+ .||..++|++..- |. ..+..|+.|-+...+...+.+.....+
T Consensus 124 ~k~~~~~~~sIr~Nls~~~a~~~i~g-~~g~~~~g~~~~igP~------~~~~~l~~g~~~~~~~~~~~~~~p~~~ 192 (610)
T COG5025 124 AKVVSRWQNSIRHNLSLNDAFIKIEG-RNGAKVKGHFWSIGPG------HETQFLKSGLRLDGGGKQMMFTLPSST 192 (610)
T ss_pred ccccchhhhhhhcccccCceEEEEec-cCCccccceeeccCCC------ccceeeccccccccccccccccCcccc
Confidence 46799999999999877789999997 6999999987642 11 235789999999999998877655443
No 58
>smart00363 S4 S4 RNA-binding domain.
Probab=34.52 E-value=50 Score=23.70 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=20.6
Q ss_pred CCceeeCCeecCCCCCCCCCCCCcEEccCCCeeeecc
Q 010270 245 LNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGT 281 (514)
Q Consensus 245 tNGT~vNg~~i~~p~~~~~~~g~~~~L~~GD~I~lG~ 281 (514)
.++.+|||+.+..| ...+..||.|.+-.
T Consensus 25 ~g~i~vng~~~~~~---------~~~l~~gd~i~~~~ 52 (60)
T smart00363 25 QGRVKVNGKKVTKP---------SYIVKPGDVISVRG 52 (60)
T ss_pred cCCEEECCEEecCC---------CeEeCCCCEEEEcc
Confidence 35688999988432 36789999987744
No 59
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=33.27 E-value=34 Score=30.30 Aligned_cols=7 Identities=57% Similarity=0.980 Sum_probs=3.1
Q ss_pred CeEEEEe
Q 010270 109 DSVVLDV 115 (514)
Q Consensus 109 ~~~~~~~ 115 (514)
+..++++
T Consensus 61 ~~v~le~ 67 (113)
T PRK06531 61 KTIVLDV 67 (113)
T ss_pred CEEEEEE
Confidence 3444443
No 60
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=33.15 E-value=56 Score=24.12 Aligned_cols=23 Identities=13% Similarity=0.392 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccCc
Q 010270 9 VFTVLLMLILILLFIFIACKPWR 31 (514)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (514)
.+.+++|++.++++++++++|=|
T Consensus 12 ~~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 12 SIGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHcccc
Confidence 46667777777888888888765
No 61
>PRK01777 hypothetical protein; Validated
Probab=31.71 E-value=39 Score=28.86 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=21.9
Q ss_pred eCCCCCceeeCCeecCCCCCCCCCCCCcEEccCCCeeee
Q 010270 241 DMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITL 279 (514)
Q Consensus 241 Dl~StNGT~vNg~~i~~p~~~~~~~g~~~~L~~GD~I~l 279 (514)
|+ +++-..|||+.+.. ...|++||.|.|
T Consensus 46 ~~-~~~~vgI~Gk~v~~----------d~~L~dGDRVeI 73 (95)
T PRK01777 46 DL-AKNKVGIYSRPAKL----------TDVLRDGDRVEI 73 (95)
T ss_pred cc-ccceEEEeCeECCC----------CCcCCCCCEEEE
Confidence 44 45778899998863 378999999976
No 62
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=29.19 E-value=93 Score=35.34 Aligned_cols=24 Identities=17% Similarity=0.497 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhcccCccCCC
Q 010270 12 VLLMLILILLFIFIACKPWRFFFP 35 (514)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~ 35 (514)
++.|.|+++++|+...++||+...
T Consensus 397 f~~if~iva~ii~~~L~R~rr~~~ 420 (807)
T KOG1094|consen 397 FVAIFLIVALIIALMLWRWRRLLS 420 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444445566998865
No 63
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=28.80 E-value=63 Score=26.31 Aligned_cols=18 Identities=39% Similarity=0.742 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 010270 11 TVLLMLILILLFIFIACK 28 (514)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~ 28 (514)
+..+++++++++++++|+
T Consensus 7 ~~g~~~ll~~v~~~~~~~ 24 (75)
T PF14575_consen 7 IVGVLLLLVLVIIVIVCF 24 (75)
T ss_dssp HHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhheeEEEEE
Confidence 333444444444555554
No 64
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=26.03 E-value=96 Score=26.20 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccCccCCCC
Q 010270 9 VFTVLLMLILILLFIFIACKPWRFFFPS 36 (514)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (514)
.+.+.+|.++++++-|.-||--|+-.+|
T Consensus 37 ~lvI~~iFil~VilwfvCC~kRkrsRrP 64 (94)
T PF05393_consen 37 FLVICGIFILLVILWFVCCKKRKRSRRP 64 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 3444555555555555566665554444
No 65
>PHA00007 E cell lysis protein
Probab=25.10 E-value=90 Score=25.76 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh
Q 010270 5 ESIVVFTVLLMLILILLFIFIA 26 (514)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (514)
-.|.+|+++|-||+=.++|.|+
T Consensus 7 ~~~LAFLLLLSLlLPSLLImFI 28 (91)
T PHA00007 7 SDTLAFLLLLSLLLPSLLIMFI 28 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4577888999898888888887
No 66
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=25.07 E-value=85 Score=23.82 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=5.7
Q ss_pred ccCcccCCc
Q 010270 44 KSGELERPL 52 (514)
Q Consensus 44 ~~~~~~~~~ 52 (514)
|-+|+++|.
T Consensus 30 QfDDle~~a 38 (51)
T TIGR00847 30 QYDDLKGAA 38 (51)
T ss_pred CCCCCccHH
Confidence 447777763
No 67
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=23.32 E-value=66 Score=27.29 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=19.1
Q ss_pred eeeCCeecCCCCCCCCCCCCcEEccCCCeeee
Q 010270 248 TLLNSQPINHPDSGSRHWGKPMELTSGDIITL 279 (514)
Q Consensus 248 T~vNg~~i~~p~~~~~~~g~~~~L~~GD~I~l 279 (514)
.+|||+.+... .|..+.|++||.|.|
T Consensus 62 VlvN~~di~~l------~g~~t~L~dgD~v~i 87 (94)
T cd01764 62 VLINDTDWELL------GEEDYILEDGDHVVF 87 (94)
T ss_pred EEECCcccccc------CCcccCCCCcCEEEE
Confidence 57799887531 145689999999876
No 68
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=23.26 E-value=52 Score=30.00 Aligned_cols=23 Identities=26% Similarity=0.722 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhcccCcc
Q 010270 10 FTVLLMLILILLFIFIACKPWRF 32 (514)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~ 32 (514)
++++++++++++++++..|+|++
T Consensus 25 ll~~lll~~~~~~~~~~~r~~~~ 47 (146)
T PF14316_consen 25 LLLALLLLLLILLLWRLWRRWRR 47 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45555556666666777777765
No 69
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=23.23 E-value=77 Score=27.09 Aligned_cols=8 Identities=38% Similarity=0.733 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 010270 15 MLILILLF 22 (514)
Q Consensus 15 ~~~~~~~~ 22 (514)
++|+++||
T Consensus 11 l~LA~lLl 18 (95)
T PF07172_consen 11 LLLAALLL 18 (95)
T ss_pred HHHHHHHH
Confidence 33333333
No 70
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=22.39 E-value=92 Score=23.01 Aligned_cols=28 Identities=21% Similarity=0.494 Sum_probs=20.6
Q ss_pred CCceeeCCeecCCCCCCCCCCCCcEEccCCCeeeecc
Q 010270 245 LNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGT 281 (514)
Q Consensus 245 tNGT~vNg~~i~~p~~~~~~~g~~~~L~~GD~I~lG~ 281 (514)
.++.+|||+.+..| ...+..||.|.+..
T Consensus 25 ~g~V~vn~~~~~~~---------~~~v~~~d~i~i~~ 52 (70)
T cd00165 25 HGHVLVNGKVVTKP---------SYKVKPGDVIEVDG 52 (70)
T ss_pred cCCEEECCEEccCC---------ccCcCCCCEEEEcC
Confidence 46788999988432 26788899887764
No 71
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.58 E-value=70 Score=28.70 Aligned_cols=17 Identities=29% Similarity=0.227 Sum_probs=9.0
Q ss_pred HHHHHHHHhhcccCccC
Q 010270 17 ILILLFIFIACKPWRFF 33 (514)
Q Consensus 17 ~~~~~~~~~~~~~~~~~ 33 (514)
+++++||+|.|||-|--
T Consensus 78 Ig~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 34456666777665544
No 72
>PF15102 TMEM154: TMEM154 protein family
Probab=21.37 E-value=64 Score=29.85 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHhhcccCccCCCCCCCCc
Q 010270 10 FTVLLMLILILLFIFIACKPWRFFFPSYRSRS 41 (514)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (514)
++.++.|+++|++++|+..-+|+-..-..+.+
T Consensus 62 lIP~VLLvlLLl~vV~lv~~~kRkr~K~~~ss 93 (146)
T PF15102_consen 62 LIPLVLLVLLLLSVVCLVIYYKRKRTKQEPSS 93 (146)
T ss_pred eHHHHHHHHHHHHHHHheeEEeecccCCCCcc
Confidence 34445556677788888888877665533333
Done!