BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010272
(514 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/484 (62%), Positives = 386/484 (79%), Gaps = 2/484 (0%)
Query: 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
M+KMLLD GGIV+TNDGNAILRE+ V HPAAKSMIE+SRTQDEEVGDGTTSVI+LAGEM
Sbjct: 34 MMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEM 93
Query: 61 LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
L VAE F+++ HPTV+ AY KAL+D ++ L KI++P+DT++R TML ++ S I TK
Sbjct: 94 LSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSNRDTMLNIINSSITTKVI 153
Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
S++ L ++A+DA TV + G +E+DIKKY +VEK+PGG +EDS VL+GVM NKDV
Sbjct: 154 SRWSSLACNIALDAVKTVQFE-ENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDV 212
Query: 181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240
P +MRR I NPRI+LLDS LEYKKGE+QT+ E+ +EED+ +L+MEEEYI+ LC I+
Sbjct: 213 THP-RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDII 271
Query: 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDV 300
+ KPD+VITEKG+SDLA HYL +A ++AIRR+RKTDNNRIA+ACGA IV+RP+EL+E DV
Sbjct: 272 QLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDV 331
Query: 301 GTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIK 360
GTGAGL E+KKIGDE+F FI +CKDPKACT+LLRGASK++L+EVERNLQDAM V RN++
Sbjct: 332 GTGAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLL 391
Query: 361 NPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTM 420
+P+LVPGGGA+E+ V+ L +KS ++ G+E+WPY A A A E IPRTL QNCG + IR +
Sbjct: 392 DPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLL 451
Query: 421 TALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 480
T+L+ KH G++G TG + DMKE IW+ VK QT+KTA+E A +LLRIDDIV
Sbjct: 452 TSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIV 511
Query: 481 SGIK 484
SG K
Sbjct: 512 SGHK 515
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 482 bits (1240), Expect = e-136, Method: Compositional matrix adjust.
Identities = 263/549 (47%), Positives = 353/549 (64%), Gaps = 64/549 (11%)
Query: 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
MLKMLLD GG+V+TNDG+AILRE+DVAHPAAKSM+ELSRTQDEEVGDGTT+VI+LAGE+
Sbjct: 44 MLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEI 103
Query: 61 L-HVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKF 119
L A I+KN HP +I +A KAL DA+ V+ +++ P+D + A M L+++ IGTK+
Sbjct: 104 LAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDVENDAAMKKLIQASIGTKY 163
Query: 120 TSQFGDLIADLAIDATTTVGVDLGQGLR-----EVDIKKYIKVEKVPGGQLEDSRVLKGV 174
+ + + +LA+DA TV DLGQ + E+DIK+Y++VEK+PGG + DSRVLKGV
Sbjct: 164 VIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGV 223
Query: 175 MFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIEN 234
+ NKDVV P KM R I NPR++LLD PLEYKKGE+QTN E+ KEEDW +L++EEE ++
Sbjct: 224 LLNKDVVHP-KMSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQL 282
Query: 235 LCMQILKFKPDLVITEKGLSDLA--------CHYLSK------------AGVSAIRRLRK 274
+C QIL +P LVITEKG+SDLA C L + G + + R+
Sbjct: 283 MCEQILAVRPTLVITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVED 342
Query: 275 TDNNRIAKACGAVIV--------NRPDELQESDVGTGAGL--FEV----KKIGDEFFAFI 320
+ + CG V + D +E G+G FE ++ F A
Sbjct: 343 LKESDVGTNCGLFKVEMIGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVS 402
Query: 321 VDCK----------------------DPKACTVLLRGASKDLLNEVERNLQDAMSVARNI 358
+ KACT++LRG SKD+LNE++RNLQDAM+VARN+
Sbjct: 403 AANRFKKISSSGALGSGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNV 462
Query: 359 IKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIR 418
+ +P L PGGGATE+ VS L +K+ +EGI++WPY+A A A E IPRTL QN G + IR
Sbjct: 463 MLSPSLSPGGGATEMAVSVKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQNAGGDPIR 522
Query: 419 TMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDD 478
++ L+ KHA G N GIDG+ G I DM IW+ +K Q+ KTAIE+AC+LLR+DD
Sbjct: 523 LLSQLRAKHAQG-NFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDD 581
Query: 479 IVSGIKKKQ 487
IVSG++K++
Sbjct: 582 IVSGVRKQE 590
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 338 bits (867), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 185/482 (38%), Positives = 301/482 (62%), Gaps = 5/482 (1%)
Query: 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
M KML+D+ G IVVTNDG IL ++D+ HPAAK M+E+++TQD+E GDGTT+ +V+AGE+
Sbjct: 48 MDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGEL 107
Query: 61 LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
L AEE +D+N HP++I + Y A E A +LD+IA+ +D +D T+L + + I K
Sbjct: 108 LRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNA 167
Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
+L+A LA++A V + G VD+ IK EK G +E+S +++GV+ +K+V
Sbjct: 168 ESHKELLAKLAVEAVKQVA-EKKDGKYVVDLDN-IKFEKKAGEGVEESELVRGVVIDKEV 225
Query: 181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240
V P +M +++ N +I L++ LE KK E + + L+ EE+ ++++ I
Sbjct: 226 VHP-RMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIA 284
Query: 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDV 300
+ ++V +KG+ DLA HYL+K G+ A+RR++K+D ++AKA GA IV +L D+
Sbjct: 285 QTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDL 344
Query: 301 GTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIK 360
G A + E +K+ E F+ CK+PKA T+L+RG ++ +++EVER L+DA+ V +++++
Sbjct: 345 GY-AEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVME 403
Query: 361 NPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTM 420
+ ++P GGA E+ ++ L + + + G E E A A + IP+TLA+N G++ + +
Sbjct: 404 DGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEML 463
Query: 421 TALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 480
+ +H N IGID G +DM E+ I + VK Q K+A EAA M+LRIDD++
Sbjct: 464 VKVISEHKN-RGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 522
Query: 481 SG 482
+
Sbjct: 523 AA 524
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 335 bits (858), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 184/482 (38%), Positives = 300/482 (62%), Gaps = 5/482 (1%)
Query: 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
M KML+D+ G IVVTND IL ++D+ HPAAK M+E+++TQD+E GDGTT+ +V+AGE+
Sbjct: 48 MDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGEL 107
Query: 61 LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
L AEE +D+N HP++I + Y A E A +LD+IA+ +D +D T+L + + I K
Sbjct: 108 LRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNA 167
Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
+L+A LA++A V + G VD+ IK EK G +E+S +++GV+ +K+V
Sbjct: 168 ESHKELLAKLAVEAVKQVA-EKKDGKYVVDLDN-IKFEKKAGEGVEESELVRGVVIDKEV 225
Query: 181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240
V P +M +++ N +I L++ LE KK E + + L+ EE+ ++++ I
Sbjct: 226 VHP-RMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIA 284
Query: 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDV 300
+ ++V +KG+ DLA HYL+K G+ A+RR++K+D ++AKA GA IV +L D+
Sbjct: 285 QTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDL 344
Query: 301 GTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIK 360
G A + E +K+ E F+ CK+PKA T+L+RG ++ +++EVER L+DA+ V +++++
Sbjct: 345 GY-AEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVME 403
Query: 361 NPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTM 420
+ ++P GGA E+ ++ L + + + G E E A A + IP+TLA+N G++ + +
Sbjct: 404 DGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEML 463
Query: 421 TALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 480
+ +H N IGID G +DM E+ I + VK Q K+A EAA M+LRIDD++
Sbjct: 464 VKVISEHKN-RGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 522
Query: 481 SG 482
+
Sbjct: 523 AA 524
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 334 bits (857), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 184/482 (38%), Positives = 300/482 (62%), Gaps = 5/482 (1%)
Query: 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
M KML+D+ G IVVTND IL ++D+ HPAAK M+E+++TQD+E GDGTT+ +V+AGE+
Sbjct: 48 MDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGEL 107
Query: 61 LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
L AEE +D+N HP++I + Y A E A +LD+IA+ +D +D T+L + + I K
Sbjct: 108 LRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNA 167
Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
+L+A LA++A V + G VD+ IK EK G +E+S +++GV+ +K+V
Sbjct: 168 ESHKELLAKLAVEAVKQVA-EKKDGKYVVDLDN-IKFEKKAGEGVEESELVRGVVIDKEV 225
Query: 181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240
V P +M +++ N +I L++ LE KK E + + L+ EE+ ++++ I
Sbjct: 226 VHP-RMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIA 284
Query: 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDV 300
+ ++V +KG+ DLA HYL+K G+ A+RR++K+D ++AKA GA IV +L D+
Sbjct: 285 QTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDL 344
Query: 301 GTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIK 360
G A + E +K+ E F+ CK+PKA T+L+RG ++ +++EVER L+DA+ V +++++
Sbjct: 345 GY-AEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVME 403
Query: 361 NPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTM 420
+ ++P GGA E+ ++ L + + + G E E A A + IP+TLA+N G++ + +
Sbjct: 404 DGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEML 463
Query: 421 TALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 480
+ +H N IGID G +DM E+ I + VK Q K+A EAA M+LRIDD++
Sbjct: 464 VKVISEHKN-RGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 522
Query: 481 SG 482
+
Sbjct: 523 AA 524
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 327 bits (838), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 182/490 (37%), Positives = 306/490 (62%), Gaps = 11/490 (2%)
Query: 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
M KML+D G +VVTNDG ILRE+ V HPAAK +IE+++TQ++EVGDGTT+ +V+AGE+
Sbjct: 44 MDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGEL 103
Query: 61 LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
L AEE +D+N HPT++ + Y A + A +L IA + D+ + + + I K
Sbjct: 104 LRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGA 163
Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
+ + +A++ ++A + V D G+ VD K IK+EK G ++D+ ++KGV+ +K+
Sbjct: 164 EKAKEKLAEIIVEAVSAVVDDEGK----VD-KDLIKIEKKSGASIDDTELIKGVLVDKER 218
Query: 181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVL--LKMEEEYIENLCMQ 238
V+ +M +K+ + +I LL+ +E K E +T+AE+ + +++ ++ EE+ ++++ +
Sbjct: 219 VS-AQMPKKVTDAKIALLNCAIEIK--ETETDAEIRITDPAKLMEFIEQEEKMLKDMVAE 275
Query: 239 ILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQES 298
I +++ +KG+ DLA HYL+K G+ A RR++K+D ++AKA GA ++ +L
Sbjct: 276 IKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQ 335
Query: 299 DVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNI 358
D+G AGL E +KI + F+ +CK PKA T+L+RG ++ ++ EV R + DA+ V
Sbjct: 336 DLGD-AGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCT 394
Query: 359 IKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIR 418
I++ ++V GGG+TE+ +S L++ + I G E+ A A A E IPRTLA+N G++ I
Sbjct: 395 IEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIE 454
Query: 419 TMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDD 478
+ ++ HA+ N G++ TGA+ DM E + + VK Q ++A E+ MLLRIDD
Sbjct: 455 ILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDD 514
Query: 479 IVSGIKKKQA 488
+++ K + A
Sbjct: 515 VIAAEKLRGA 524
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 327 bits (837), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 180/484 (37%), Positives = 303/484 (62%), Gaps = 11/484 (2%)
Query: 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
M KML+D G +VVTNDG ILRE+ V HPAAK +IE+++TQ++EVGDGTT+ +V+AGE+
Sbjct: 38 MDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGEL 97
Query: 61 LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
L AEE +D+N HPT++ + Y A + A +L IA + D+ + + + I K
Sbjct: 98 LRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGA 157
Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
+ + +A++ ++A + V D G+ VD K IK+EK G ++D+ ++KGV+ +K+
Sbjct: 158 EKAKEKLAEIIVEAVSAVVDDEGK----VD-KDLIKIEKKSGASIDDTELIKGVLVDKER 212
Query: 181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVL--LKMEEEYIENLCMQ 238
V+ +M +K+ + +I LL+ +E K E +T+AE+ + +++ ++ EE+ ++++ +
Sbjct: 213 VS-AQMPKKVTDAKIALLNCAIEIK--ETETDAEIRITDPAKLMEFIEQEEKMLKDMVAE 269
Query: 239 ILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQES 298
I +++ +KG+ DLA HYL+K G+ A RR++K+D ++AKA GA ++ +L
Sbjct: 270 IKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQ 329
Query: 299 DVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNI 358
D+G AGL E +KI + F+ +CK PKA T+L+RG ++ ++ EV R + DA+ V
Sbjct: 330 DLGD-AGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCT 388
Query: 359 IKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIR 418
I++ ++V GGG+TE+ +S L++ + I G E+ A A A E IPRTLA+N G++ I
Sbjct: 389 IEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIE 448
Query: 419 TMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDD 478
+ ++ HA+ N G++ TGA+ DM E + + VK Q ++A E+ MLLRIDD
Sbjct: 449 ILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDD 508
Query: 479 IVSG 482
+++
Sbjct: 509 VIAA 512
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 326 bits (836), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 184/481 (38%), Positives = 305/481 (63%), Gaps = 5/481 (1%)
Query: 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
M KML+D+ G IV+TNDG IL+E+DV HPAAK M+E+S+TQD VGDGTT+ +++AG +
Sbjct: 46 MDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGL 105
Query: 61 LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
L A+ I++N HPTVI Y A E+A V+D+I+ I +++A +L + ++ + +K
Sbjct: 106 LQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKSA 165
Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
S D +A+++ +A +V +L G VD I+V K GG ++D++++ G++ +K+
Sbjct: 166 SVAKDKLAEISYEAVKSVA-ELRDGKYYVDFDN-IQVVKKQGGAIDDTQLINGIIVDKEK 223
Query: 181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240
V PG M + + +I LLD+PLE KK E TN + + L EE + + +I
Sbjct: 224 VHPG-MPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIK 282
Query: 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDV 300
++VIT+KG+ D+A HYLS+AG+ A+RR++K+D +++AKA GA IV+ DE+ SD+
Sbjct: 283 SVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDL 342
Query: 301 GTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIK 360
GT + +V K+G+++ F+ CK+PKA ++L+RG ++ +++E+ER++ D++ V + ++
Sbjct: 343 GTAERVEQV-KVGEDYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALE 401
Query: 361 NPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTM 420
+ GGGAT ++ L+ + I G ++ E A A E IPR LA+N G++ I +
Sbjct: 402 DGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDIL 461
Query: 421 TALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 480
L+ +HA G + GI+ TG I DM + + + V Q ++A EAA M+LRIDD++
Sbjct: 462 LKLRAEHAKGNKTY-GINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI 520
Query: 481 S 481
+
Sbjct: 521 A 521
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 325 bits (833), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 182/490 (37%), Positives = 305/490 (62%), Gaps = 11/490 (2%)
Query: 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
M KML+D G +VVTNDG ILRE+ V HPAAK +IE+++TQ++EVGDGTT+ +V+AGE+
Sbjct: 44 MDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGEL 103
Query: 61 LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
L AEE +D+N HPT++ + Y A + A +L IA + D+ + + + I K
Sbjct: 104 LRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGA 163
Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
+ + +A++ ++A + V D G+ VD K IK+EK G ++D+ ++KGV+ +K+
Sbjct: 164 EKAKEKLAEIIVEAVSAVVDDEGK----VD-KDLIKIEKKSGASIDDTELIKGVLVDKER 218
Query: 181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVL--LKMEEEYIENLCMQ 238
V+ +M +K+ + +I LL+ +E K E +T+AE+ + +++ ++ EE+ ++++ +
Sbjct: 219 VS-AQMPKKVTDAKIALLNCAIEIK--ETETDAEIRITDPAKLMEFIEQEEKMLKDMVAE 275
Query: 239 ILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQES 298
I +++ +KG+ DLA HYL+K G+ A RR++K+D ++AKA GA ++ L
Sbjct: 276 IKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQ 335
Query: 299 DVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNI 358
D+G AGL E +KI + F+ +CK PKA T+L+RG ++ ++ EV R + DA+ V
Sbjct: 336 DLGD-AGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCT 394
Query: 359 IKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIR 418
I++ ++V GGG+TE+ +S L++ + I G E+ A A A E IPRTLA+N G++ I
Sbjct: 395 IEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIE 454
Query: 419 TMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDD 478
+ ++ HA+ N G++ TGA+ DM E + + VK Q ++A E+ MLLRIDD
Sbjct: 455 ILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDD 514
Query: 479 IVSGIKKKQA 488
+++ K + A
Sbjct: 515 VIAAEKLRGA 524
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 324 bits (830), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 180/484 (37%), Positives = 302/484 (62%), Gaps = 11/484 (2%)
Query: 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
M KML+D G +VVTNDG ILRE+ V HPAAK +IE+++TQ++EVGDGTT+ +V+AGE+
Sbjct: 38 MDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGEL 97
Query: 61 LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
L AEE +D+N HPT++ + Y A + A +L IA + D+ + + + I K
Sbjct: 98 LRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGA 157
Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
+ + +A++ ++A + V D G+ VD K IK+EK G ++D+ ++KGV+ +K+
Sbjct: 158 EKAKEKLAEIIVEAVSAVVDDEGK----VD-KDLIKIEKKSGASIDDTELIKGVLVDKER 212
Query: 181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVL--LKMEEEYIENLCMQ 238
V+ +M +K+ + +I LL+ +E K E +T+AE+ + +++ ++ EE+ ++++ +
Sbjct: 213 VS-AQMPKKVTDAKIALLNCAIEIK--ETETDAEIRITDPAKLMEFIEQEEKMLKDMVAE 269
Query: 239 ILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQES 298
I +++ +KG+ DLA HYL+K G+ A RR++K+D ++AKA GA ++ L
Sbjct: 270 IKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQ 329
Query: 299 DVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNI 358
D+G AGL E +KI + F+ +CK PKA T+L+RG ++ ++ EV R + DA+ V
Sbjct: 330 DLGD-AGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCT 388
Query: 359 IKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIR 418
I++ ++V GGG+TE+ +S L++ + I G E+ A A A E IPRTLA+N G++ I
Sbjct: 389 IEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIE 448
Query: 419 TMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDD 478
+ ++ HA+ N G++ TGA+ DM E + + VK Q ++A E+ MLLRIDD
Sbjct: 449 ILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDD 508
Query: 479 IVSG 482
+++
Sbjct: 509 VIAA 512
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 321 bits (823), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 176/502 (35%), Positives = 298/502 (59%), Gaps = 5/502 (0%)
Query: 4 MLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHV 63
ML+D+ G IV+TNDG IL+E+D+ HPAAK ++E+S+TQD EVGDGTT+ VL+GE+L
Sbjct: 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSK 60
Query: 64 AEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQF 123
AEE I K H T+I Y A E +L+ I + I +D A ++ + + I K +
Sbjct: 61 AEELIMKGVHSTIISEGYRHAAEKCREILETITIAISPDDEAALIKIAGTAITGKGAEAY 120
Query: 124 GDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAP 183
+ ++ L + A ++ + GL+ V++ + IK+EK GG ++DS ++ G++ +K+ P
Sbjct: 121 KEKLSALTVKAVRSIVEEEEDGLK-VNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHP 179
Query: 184 GKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFK 243
M K+ N +I+LL P+E++K E + ++ ++ L EE+ + + +++
Sbjct: 180 -NMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASG 238
Query: 244 PDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTG 303
++V +KG+ D+A +Y+ KAG+ A+RR++K+D R++K GA I+ D++ DVGT
Sbjct: 239 ANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGT- 297
Query: 304 AGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPK 363
AGL E K++ ++ C++ KA TVLL G ++ +++ ++ L DA+ V +I++ K
Sbjct: 298 AGLVEEKEVRGGKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGK 357
Query: 364 LVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTAL 423
+V GGG++E+ +S L + +S+++G E+ A A E IP LA+N G++ I M L
Sbjct: 358 VVVGGGSSEVELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVEL 417
Query: 424 QGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV-SG 482
+ +H G N G++ TG + DM E + + +K Q A+EA M+LRIDD+V S
Sbjct: 418 RSQHEKG-NKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVVASK 476
Query: 483 IKKKQAPGSGQTPSKPQIETEA 504
Q G G P P ++ +A
Sbjct: 477 GSANQGMGPGGLPDMPDLDMDA 498
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 319 bits (817), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 186/491 (37%), Positives = 292/491 (59%), Gaps = 9/491 (1%)
Query: 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
M KML+D+ G I+++NDG IL+E+DV HP AK ++E+S+ QD VGDGTT+ +VL+GE+
Sbjct: 47 MDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGEL 106
Query: 61 LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
L AE +D+ HPTVI Y A+ +A ++D+IA + D AT+ + + + K T
Sbjct: 107 LKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEK--STDDATLRKIALTALSGKNT 164
Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
D +ADL + A V ++ G VD IKV+K GG + D++ + G++ +K+
Sbjct: 165 GLSNDFLADLVVKAVNAVA-EVRDGKTIVDTAN-IKVDKKNGGSVNDTQFISGIVIDKEK 222
Query: 181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240
V KM + N +I L+DS LE KK E + ++ + L E + + +I
Sbjct: 223 V-HSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIK 281
Query: 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDV 300
K ++V+ +KG+ D+A HYL+K G+ A+RR++K+D ++AKA GA IV D+L S +
Sbjct: 282 KSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVL 341
Query: 301 GTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIK 360
G A E +KIGD+ F++ CK+PKA ++L+RG + +++EVER L DA+ V +
Sbjct: 342 GE-AETVEERKIGDDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKE 400
Query: 361 NPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTM 420
+ K + GGGA E ++ L + ++S+ G E+ EA A A E IPRTLA+N GI+ I T+
Sbjct: 401 DGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTL 460
Query: 421 TALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 480
L+ G +G+D + + DMK + + D VK ++A+E A M+LRIDD++
Sbjct: 461 IKLKADDEKGR-ISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI 519
Query: 481 SGIKKKQAPGS 491
+ KK P S
Sbjct: 520 AS--KKSTPPS 528
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 314 bits (805), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 178/488 (36%), Positives = 294/488 (60%), Gaps = 29/488 (5%)
Query: 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
M KML+D G +VVTNDG ILRE+ V HPAAK +IE+++TQ++EVGDGTT+ +V+AGE+
Sbjct: 44 MDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGEL 103
Query: 61 LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
L AEE +D+N HPT++ + Y A + A +L IA + D+ + + + I K
Sbjct: 104 LRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGA 163
Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
+ + +A++ ++A + V D G+ VD K IK+EK G ++D+ ++KGV+ +K+
Sbjct: 164 EKAKEKLAEIIVEAVSAVVDDEGK----VD-KDLIKIEKKSGASIDDTELIKGVLVDKER 218
Query: 181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240
V+ +M +K+ + +I LL+ +E +T +E++K ++ +I
Sbjct: 219 VS-AQMPKKVTDAKIALLNCAIE------ETASEMLK----------------DMVAEIK 255
Query: 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDV 300
+++ +KG+ DLA HYL+K G+ A RR++K+D ++AKA GA ++ +L D+
Sbjct: 256 ASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDL 315
Query: 301 GTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIK 360
G AGL E +KI + F+ +CK PKA T+L+RG ++ ++ EV R + DA+ V I+
Sbjct: 316 GD-AGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIE 374
Query: 361 NPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTM 420
+ ++V GGG+TE+ +S L++ + I G E+ A A A E IPRTLA+N G++ I +
Sbjct: 375 DGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEIL 434
Query: 421 TALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 480
++ HA+ N G++ TGA+ DM E + + VK Q ++A E+ MLLRIDD++
Sbjct: 435 VKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVI 494
Query: 481 SGIKKKQA 488
+ K + A
Sbjct: 495 AAEKLRGA 502
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 314 bits (804), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 176/481 (36%), Positives = 291/481 (60%), Gaps = 29/481 (6%)
Query: 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
M KML+D G +VVTNDG ILRE+ V HPAAK +IE+++TQ++EVGDGTT+ +V+AGE+
Sbjct: 38 MDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGEL 97
Query: 61 LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
L AEE +D+N HPT++ + Y A + A +L IA + D+ + + + I K
Sbjct: 98 LRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGA 157
Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
+ + +A++ ++A + V D G+ VD K IK+EK G ++D+ ++KGV+ +K+
Sbjct: 158 EKAKEKLAEIIVEAVSAVVDDEGK----VD-KDLIKIEKKSGASIDDTELIKGVLVDKER 212
Query: 181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240
V+ +M +K+ + +I LL+ +E +T +E++K ++ +I
Sbjct: 213 VSA-QMPKKVTDAKIALLNCAIE------ETASEMLK----------------DMVAEIK 249
Query: 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDV 300
+++ +KG+ DLA HYL+K G+ A RR++K+D ++AKA GA ++ +L D+
Sbjct: 250 ASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDL 309
Query: 301 GTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIK 360
G AGL E +KI + F+ +CK PKA T+L+RG ++ ++ EV R + DA+ V I+
Sbjct: 310 GD-AGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIE 368
Query: 361 NPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTM 420
+ ++V GGG+TE+ +S L++ + I G E+ A A A E IPRTLA+N G++ I +
Sbjct: 369 DGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEIL 428
Query: 421 TALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 480
++ HA+ N G++ TGA+ DM E + + VK Q ++A E+ MLLRIDD++
Sbjct: 429 VKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVI 488
Query: 481 S 481
+
Sbjct: 489 A 489
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 311 bits (798), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 176/481 (36%), Positives = 290/481 (60%), Gaps = 29/481 (6%)
Query: 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
M KML+D G +VVTNDG ILRE+ V HPAAK +IE+++TQ++EVGDGTT+ +V+AGE+
Sbjct: 38 MDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGEL 97
Query: 61 LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
L AEE +D+N HPT++ + Y A + A +L IA + D+ + + + I K
Sbjct: 98 LRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGA 157
Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
+ + +A++ ++A + V D G+ VD K IK+EK G ++D+ ++KGV+ +K+
Sbjct: 158 EKAKEKLAEIIVEAVSAVVDDEGK----VD-KDLIKIEKKSGASIDDTELIKGVLVDKER 212
Query: 181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240
V+ +M +K+ + +I LL+ +E +T +E++K ++ +I
Sbjct: 213 VSA-QMPKKVTDAKIALLNCAIE------ETASEMLK----------------DMVAEIK 249
Query: 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDV 300
+++ +KG+ DLA HYL+K G+ A RR++K+D ++AKA GA ++ L D+
Sbjct: 250 ASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDL 309
Query: 301 GTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIK 360
G AGL E +KI + F+ +CK PKA T+L+RG ++ ++ EV R + DA+ V I+
Sbjct: 310 GD-AGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIE 368
Query: 361 NPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTM 420
+ ++V GGG+TE+ +S L++ + I G E+ A A A E IPRTLA+N G++ I +
Sbjct: 369 DGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEIL 428
Query: 421 TALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 480
++ HA+ N G++ TGA+ DM E + + VK Q ++A E+ MLLRIDD++
Sbjct: 429 VKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVI 488
Query: 481 S 481
+
Sbjct: 489 A 489
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 311 bits (796), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 175/481 (36%), Positives = 290/481 (60%), Gaps = 29/481 (6%)
Query: 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
M KML+D G +VVTNDG ILRE+ V HPAAK +IE+++TQ++EVGDGTT+ +V+AGE+
Sbjct: 38 MDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGEL 97
Query: 61 LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
L AEE +D+N HPT++ + Y A + A +L IA + D+ + + + I K
Sbjct: 98 LRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGA 157
Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
+ + +A++ ++A + V D G+ VD K IK+EK G ++D+ ++KGV+ +K+
Sbjct: 158 EKAKEKLAEIIVEAVSAVVDDEGK----VD-KDLIKIEKKSGASIDDTELIKGVLVDKER 212
Query: 181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240
V+ +M +K+ + +I LL+ +E +T +E++K ++ +I
Sbjct: 213 VSA-QMPKKVTDAKIALLNCAIE------ETASEMLK----------------DMVAEIK 249
Query: 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDV 300
+++ +KG+ DLA HYL+K G+ A RR++K+D ++AKA GA ++ +L D+
Sbjct: 250 ASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDL 309
Query: 301 GTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIK 360
G AGL E +KI + F+ +CK PKA T+L+RG ++ ++ EV R + A+ V I+
Sbjct: 310 GD-AGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDAAVGVVGCTIE 368
Query: 361 NPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTM 420
+ ++V GGG+TE+ +S L++ + I G E+ A A A E IPRTLA+N G++ I +
Sbjct: 369 DGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEIL 428
Query: 421 TALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 480
++ HA+ N G++ TGA+ DM E + + VK Q ++A E+ MLLRIDD++
Sbjct: 429 VKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVI 488
Query: 481 S 481
+
Sbjct: 489 A 489
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 303 bits (775), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 171/501 (34%), Positives = 292/501 (58%), Gaps = 8/501 (1%)
Query: 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
M KML+D+ G I +TNDG IL ++D+ HPAAK ++++++ QDEE DGT + ++ +GE+
Sbjct: 55 MDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGEL 114
Query: 61 LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
+ AE+ + K+ HPT+I Y KA E A+ + ++A + ND + + + + +K
Sbjct: 115 VKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSINDTDLLRKIAMTSLSSKAV 174
Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
+ + IAD+ + A T V +L VD+ I++ K GG + D++++ G++ +K+V
Sbjct: 175 AGAREYIADIVVKAVTQVA-ELRGDKWYVDLDN-IQIVKKAGGSINDTQLVYGIVVDKEV 232
Query: 181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240
V PG M +++ N +I L+D+ LE +K E + + L EE I+ +IL
Sbjct: 233 VHPG-MPKRLENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKIL 291
Query: 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDV 300
+++I +KG+ ++A YL+K GV A+RR +K+D ++A+A G +V+ DE+ E D+
Sbjct: 292 ATGANVIICQKGIDEVAQSYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDL 351
Query: 301 GTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIK 360
G A L E +K+G++ F+ K+PK+ ++L+RG + L++E ER L+DA+ ++IK
Sbjct: 352 GY-ASLIEERKVGEDKMVFVEGAKNPKSISILIRGGLERLVDETERALRDALGTVADVIK 410
Query: 361 NPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTM 420
+ + + GGGA E+ ++ L++ + + G E+ EA A A E++ L +N G + I +
Sbjct: 411 DGRAIAGGGAVEIEIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLL 470
Query: 421 TALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 480
L+ H N N W GID G DM ++ + + VK K A EAA ++LRIDD+V
Sbjct: 471 MKLRSTHENENNKWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVV 530
Query: 481 SGIKK----KQAPGSGQTPSK 497
S KK + PG PS+
Sbjct: 531 SAGKKSGGESKTPGGANKPSE 551
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 274 bits (700), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 168/481 (34%), Positives = 275/481 (57%), Gaps = 10/481 (2%)
Query: 3 KMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLH 62
KM++D G + VTNDG IL +DV H AK M+ELS++QD+E+GDGTT V+VLAG +L
Sbjct: 37 KMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLE 96
Query: 63 VAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIA--MPIDTNDRATMLGLVKSCIGTKFT 120
AE+ +D+ HP I Y +A A+ LDKI+ + +D + ++ K+ +G+K
Sbjct: 97 EAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVV 156
Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
+ +A++A++A TV D+ + R+VD + IKVE GG+LED++++KGV+ +KD
Sbjct: 157 NSCHRQMAEIAVNAVLTVA-DMQR--RDVDFE-LIKVEGKVGGRLEDTKLIKGVIVDKDF 212
Query: 181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240
P +M +++ + +I +L P E K + + ++ ED++ L K E+E E + QI
Sbjct: 213 SHP-QMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIK 271
Query: 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDV 300
+ +L + + G D A H L + + A+R + + IA A G IV R EL +
Sbjct: 272 ETGANLAVCQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKL 331
Query: 301 GTGAGLFEVKKIG--DEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNI 358
G AGL + G + I CK+ +A T+ +RG +K ++ E +R+L DA+ V RN+
Sbjct: 332 GF-AGLVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNL 390
Query: 359 IKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIR 418
I++ ++V GGGA E++ + + Q++ +E++ A A A E IP LA+N G+N I+
Sbjct: 391 IRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQ 450
Query: 419 TMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDD 478
TMT ++ + N +GID +DMK + + + K Q A + M+L+IDD
Sbjct: 451 TMTEVRARQVKEVNPALGIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDD 510
Query: 479 I 479
I
Sbjct: 511 I 511
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 161/486 (33%), Positives = 260/486 (53%), Gaps = 16/486 (3%)
Query: 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
M K+++D G ++NDG IL+ LDV HPAAK++++++++QD EVGDGTTSV +LA E
Sbjct: 36 MDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEF 95
Query: 61 LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSC----IG 116
L + ++++ HP +I RA+ A + AV + +IA+ + D+ L++ C +
Sbjct: 96 LKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALS 155
Query: 117 TKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMF 176
+K SQ A + +DA + DL Q K I ++KV GG LE+S+++ GV F
Sbjct: 156 SKLISQQKAFFAKMVVDAVMMLD-DLLQ-------LKMIGIKKVQGGALEESQLVAGVAF 207
Query: 177 NKDVVAPG-KMR-RKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIEN 234
K G +M+ +K NP I LL+ LE K ++ + ED++ ++ E + +
Sbjct: 208 KKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYD 267
Query: 235 LCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDE 294
+I +V+++ + D+A Y + + R+ + D R ACG I +
Sbjct: 268 KLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNA 327
Query: 295 LQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSV 354
L SDV +FE +IG E + F C K CT++LRG ++ + E ER+L DA+ +
Sbjct: 328 L-SSDVLGRCQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMI 386
Query: 355 ARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGI 414
R IKN +V GGGA E+ +S L+ S +I G ++ A A A E IPR L N G
Sbjct: 387 VRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGF 446
Query: 415 NVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLL 474
+ + L+ +HA G W G+D NT I+D E +W+ V+ A EAAC+++
Sbjct: 447 DATNILNKLRARHAQG-GMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIV 505
Query: 475 RIDDIV 480
+D+ +
Sbjct: 506 SVDETI 511
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 123/173 (71%), Positives = 148/173 (85%), Gaps = 1/173 (0%)
Query: 165 LEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVL 224
+EDS VL+GVM NKDV P +MRR I NPRI+LLDS LEYKKGE+QT+ E+ +EED+ +
Sbjct: 1 MEDSCVLRGVMINKDVTHP-RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRI 59
Query: 225 LKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKAC 284
L+MEEEYI LC I++ KPD+VITEKG+SDLA HYL +A V+AIRR+RKTDNNRIA+AC
Sbjct: 60 LQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARAC 119
Query: 285 GAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGAS 337
GA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI DCKDPKACT+LLRGAS
Sbjct: 120 GARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGAS 172
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 261 bits (667), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 157/502 (31%), Positives = 277/502 (55%), Gaps = 19/502 (3%)
Query: 4 MLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHV 63
+++ ++ ++NDG IL+ LDV HPAAK+++++SR QD EVGDGTTSV +LAGE++
Sbjct: 52 LIVTSNQKTTISNDGATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKE 111
Query: 64 AEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQF 123
A+ F+++ +I + Y KA+ AV ++++A+ I T+++++ L++ C T +S+
Sbjct: 112 AKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDI-TSEKSSGRELLERCARTAMSSKL 170
Query: 124 ----GDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKD 179
D + +DA ++ + ++D K I ++K+PGG +E+S + GV F K
Sbjct: 171 IHNNADFFVKMCVDAVLSLDRN------DLD-DKLIGIKKIPGGAMEESLFINGVAFKKT 223
Query: 180 VVAPG--KMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCM 237
G + +K NP+I+ L+ LE K ++ + ED++ ++ E + I
Sbjct: 224 FSYAGFEQQPKKFNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLR 283
Query: 238 QILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQE 297
Q+ + ++V+++ + DLA + + + R+ D NR+ +A G I + +++
Sbjct: 284 QVEETGANIVLSKLPIGDLATQFFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKP 343
Query: 298 SDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARN 357
+GT A LFE +IG E + C K CT+LLRG ++ ++ EVER+L DA+ + +
Sbjct: 344 EHLGTCA-LFEEMQIGSERYNLFQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKR 402
Query: 358 IIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVI 417
++N +V GGGATE+ VS L+ S +I G ++ A A A E IPR L +N G + I
Sbjct: 403 ALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAI 462
Query: 418 RTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRID 477
+ L+ H+ GE W G+ T I D + +W+ VK +A EA ++L +D
Sbjct: 463 EILNKLRLAHSKGEK-WYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVD 521
Query: 478 DIVSGIKKKQAPGSGQTPSKPQ 499
+ ++ K ++ +G P PQ
Sbjct: 522 ETITN-KGSESANAGMMP--PQ 540
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 261 bits (666), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 159/487 (32%), Positives = 264/487 (54%), Gaps = 12/487 (2%)
Query: 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
M KM+ D G + +TNDG IL+++ V HPAA+ ++ELS+ QD E GDGTTSV+++AG +
Sbjct: 36 MDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSL 95
Query: 61 LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
L + + K HPT+I ++ KALE + +L ++ P++ +DR T+L + + +K
Sbjct: 96 LDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSDRETLLNSAATSLNSKVV 155
Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
SQ+ L++ +++DA V +D VD++ IK+ K GG ++D +++G++ + V
Sbjct: 156 SQYSSLLSPMSVDAVMKV-IDPATA-TSVDLRD-IKIVKKLGGTIDDCELVEGLVLTQKV 212
Query: 181 VAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240
G R + +I L+ L K + + + +L+ E YI NL QI
Sbjct: 213 ANSGITR--VEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIK 270
Query: 241 KFKPDLVITEK-----GLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDEL 295
K ++++ +K LSDLA H+L+K + ++ + + D I K G V D+
Sbjct: 271 KTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHVDQF 330
Query: 296 QESDVGTGAGLFEVKKIGDEFFAFIVDCKDP-KACTVLLRGASKDLLNEVERNLQDAMSV 354
+G+ EV G I C P K T+++RG++K ++ E ER++ DA+ V
Sbjct: 331 TADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCV 390
Query: 355 ARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGI 414
R ++K L+ GGGA E+ ++ L + S ++ G+E + A A A E IP TLA+N G+
Sbjct: 391 IRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGL 450
Query: 415 NVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLL 474
N I T+T L+ +HA GE GI+ G IS++ E + V A E +L
Sbjct: 451 NPISTVTELRNRHAQGEKTT-GINVRKGGISNILEELVVQPLLVSVSALTLATETVRSIL 509
Query: 475 RIDDIVS 481
+IDD+V+
Sbjct: 510 KIDDVVN 516
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 136/493 (27%), Positives = 264/493 (53%), Gaps = 28/493 (5%)
Query: 2 LKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEML 61
+KML+ +G I +T DGN +L E+ + HP A + +++ QD+ GDGTTS +++ GE+L
Sbjct: 36 MKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELL 95
Query: 62 HVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTS 121
A+ +I + HP +I + A E A+ L+++ + + DR T++ + ++ + TK +
Sbjct: 96 KQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEM-DRETLIDVARTSLRTKVHA 154
Query: 122 QFGDLIADLAIDATTTVG-----VDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMF 176
+ D++ + +D+ + +DL +++ ++ D+ +++G++
Sbjct: 155 ELADVLTEAVVDSILAIKKQDEPIDLF----------MVEIMEMKHKSETDTSLIRGLVL 204
Query: 177 NKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLC 236
+ P M++++ + I+ + LEY+K E + E+ E L+K E ++IE+
Sbjct: 205 DHGARHP-DMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRV 263
Query: 237 MQILKFKPDL---------VITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAV 287
+I++ K + VI +KG+ + L+K G+ A+RR ++ + R+ ACG +
Sbjct: 264 KKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRAKRRNMERLTLACGGI 323
Query: 288 IVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERN 347
+N D+L + AG++E +G+E F FI C +P++ T+L++G +K L +++
Sbjct: 324 ALNSLDDLNPDCLLGHAGVYEYT-LGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDA 382
Query: 348 LQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRT 407
++D + +N I + +VPG GA E+ ++ L + S++G + +A A A IP+
Sbjct: 383 IRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKV 442
Query: 408 LAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAI 467
LAQN G ++ T+ +Q +H+ +G+D NTG E IWD Y VK Q +
Sbjct: 443 LAQNSGFDLQETLVKVQAEHSES-GQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCT 501
Query: 468 EAACMLLRIDDIV 480
A +L +D+I+
Sbjct: 502 VIATNILLVDEIM 514
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 228 bits (580), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 149/491 (30%), Positives = 269/491 (54%), Gaps = 20/491 (4%)
Query: 3 KMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLH 62
K+L+ G I +TNDG IL ++++ + AK +++LS++QD+E+GDGTT V+VLA +L
Sbjct: 72 KILISPDGEITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLD 131
Query: 63 VAEEFIDKNYHPTVICRAYNKALEDAVAVL----DKIAMPIDTNDRATMLGLVKSCIGTK 118
A E I K HP I +++A + A++ L D I+ D R +L K+ +G+K
Sbjct: 132 QALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSK 191
Query: 119 FTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNK 178
S+ D A++A++A V + + ++VD IK++ GG + DS+++ GV+ +K
Sbjct: 192 IVSKDHDRFAEMAVEAVINV---MDKDRKDVDFD-LIKMQGRVGGSISDSKLINGVILDK 247
Query: 179 DVVAPGKMRRKIVNPR-------IILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEY 231
D P K V P+ + +L P E K + + ++ E+++ L E++
Sbjct: 248 DFSHP--QMPKCVLPKEGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDK 305
Query: 232 IENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNR 291
+ + + K D+VI + G D A H L + + A+R + + IA + IV R
Sbjct: 306 FKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPR 365
Query: 292 PDELQESDVGTGAGLFEVKKIG--DEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQ 349
+L + +GT + ++E ++ G + I K+ K T +RG++K +++E ER L
Sbjct: 366 FQDLSKDKLGTCSRIYE-QEFGTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALH 424
Query: 350 DAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLA 409
D++ V RN++K+ ++V GGGA E+T+S + +++ GI+++ + A A + IP TLA
Sbjct: 425 DSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLA 484
Query: 410 QNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEA 469
+N G++ I T++ L+ K + + IG+D +DMKE + D + K Q A +
Sbjct: 485 ENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQL 544
Query: 470 ACMLLRIDDIV 480
M+L+ID+++
Sbjct: 545 CRMILKIDNVI 555
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 153/491 (31%), Positives = 255/491 (51%), Gaps = 15/491 (3%)
Query: 3 KMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLH 62
KML+D G + +TNDG IL+ L+V HPAAK + EL+ QD+EVGDGTTSV+++A E+L
Sbjct: 37 KMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLK 96
Query: 63 VAEEFIDKNYHPTVICRAYNKALEDAVAVL-DKIAMPIDTNDRATMLGLVKSCIGTKFTS 121
A+E + + HPT + Y A ++AV + + + + D R ++ K+ + +K
Sbjct: 97 NADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKVIG 156
Query: 122 QFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVV 181
GD A+L +DA + +G + I V K G +S ++ G N VV
Sbjct: 157 INGDFFANLVVDAVLAIKYTDIRGQPRYPVNS-INVLKAHGRSQMESMLINGYALNC-VV 214
Query: 182 APGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILK 241
M ++IVN +I LD L+ K + + E + + + E + + +IL
Sbjct: 215 GSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILA 274
Query: 242 FKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVG 301
++++T G+ D+ Y +AG A+RR+ K D RIAKA GA +++ L+ +
Sbjct: 275 TGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETF 334
Query: 302 TGAGLFEV-----KKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVAR 356
+ L + ++I D+ I + K + +V+LRGA+ + +E+ER+L DA+ V +
Sbjct: 335 EASMLGQAEEVVQERICDDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVK 394
Query: 357 NIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINV 416
++++ +VPGGGA E +S L+ ++S+ E+ A + IP TLA N +
Sbjct: 395 RVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDS 454
Query: 417 IRTMTALQGKH----ANGEN---AWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEA 469
+ L+ H N E WIG+D G D K+ +++ VK ++ K A EA
Sbjct: 455 TDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEA 514
Query: 470 ACMLLRIDDIV 480
A +LRIDD++
Sbjct: 515 AITILRIDDLI 525
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 528
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 143/488 (29%), Positives = 262/488 (53%), Gaps = 16/488 (3%)
Query: 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
M KM+ + G I+++NDG+ IL+++ + HP A+ ++E+S QD E GDGTTSV++L G +
Sbjct: 44 MDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGAL 103
Query: 61 LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
L AE ++K HPT+I ++ A + +V +L ++ + +DR ++ + + +K
Sbjct: 104 LGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLSDREQLVRAASTSLSSKIV 163
Query: 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDV 180
SQ+ +A LA+D+ + + + VD+ V+KV GG ++D+ ++ GV+ +
Sbjct: 164 SQYSSFLAPLAVDSVLKIS---DENSKNVDLNDIRLVKKV-GGTIDDTEMIDGVVLTQTA 219
Query: 181 V--APGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQ 238
+ A G R++ +I L+ + K + + N + + +LK E Y+ N+C +
Sbjct: 220 IKSAGGPTRKE--KAKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKK 277
Query: 239 ILKFKPDLVITEKGL-----SDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPD 293
I K K ++++ +K + +DLA H+LSK + ++ + + + ++K G + +
Sbjct: 278 IKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIE 337
Query: 294 ELQESDVGTGAGLFEVKKIGDEFFAF--IVDCKDPKACTVLLRGASKDLLNEVERNLQDA 351
E + + + E+ G + I + +V++RGA+ +++E ER+L DA
Sbjct: 338 LFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDA 397
Query: 352 MSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQN 411
+ V R ++K L+ GGGA E+ +S L +++ S+EG++ + ++ A A E IP TLA+N
Sbjct: 398 LCVIRCLVKERGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAEN 457
Query: 412 CGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAAC 471
G+N I+ +T L+ KH NGE GI ++ E I V A E
Sbjct: 458 AGLNSIKVVTELRSKHENGE-LNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVK 516
Query: 472 MLLRIDDI 479
+LRIDDI
Sbjct: 517 SILRIDDI 524
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 148/521 (28%), Positives = 265/521 (50%), Gaps = 42/521 (8%)
Query: 3 KMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLH 62
K++++ G I++TND +LRELD+ HPA K ++ + Q ++GDGT V++LAGE+L+
Sbjct: 53 KIIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLN 112
Query: 63 VAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMP--IDTNDRATMLGLVKSCIGTKFT 120
V+E+ I I + YN A + + LD++ + D ND+ +L ++K I +K
Sbjct: 113 VSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMIKPVISSK-- 170
Query: 121 SQFG--DLIADLAIDATTTVGVDLGQGLREVDIKKY--IKVEKVPGGQLEDSRVLKGVMF 176
++G D++++L +A + V + + Q E+ I+V K+ GG L +S V+KG++F
Sbjct: 171 -KYGSEDILSELVSEAVSHV-LPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVF 228
Query: 177 NKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLC 236
N++ K + ++ + PL+ E + L ++ K EE+ I+ +
Sbjct: 229 NREPEGHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMM 288
Query: 237 MQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNR----- 291
+I + ++ G+ +LA HYL++ G+ ++ K + R+ + CGA + R
Sbjct: 289 KEIADMGVECIVAGAGVGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPT 348
Query: 292 PDELQESDVGTGAGLFEVKKI----GDEFFAFIVDCKD-PKACTVLLRGASKDLLNEVER 346
P+EL GL E K GD F + + + T++LRGA+++ L+++ER
Sbjct: 349 PEEL---------GLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIER 399
Query: 347 NLQDAMSVARNIIK--NPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAI 404
+ D ++ + ++K KL+PG GATE+ + + + + G+ + + A+AFE +
Sbjct: 400 AIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVV 459
Query: 405 PRTLAQNCGINVIRTMTALQGKHANGENA---------WIGIDGNTG-AISDMKERKIWD 454
PRTLA+ G++V + L H E + IDG + + D++E I+D
Sbjct: 460 PRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYD 519
Query: 455 AYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQTP 495
K A EAA +L ID I+ KK P + Q P
Sbjct: 520 MLATKKFAINVATEAATTVLSIDQIIMA-KKAGGPRAPQGP 559
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 145/498 (29%), Positives = 246/498 (49%), Gaps = 21/498 (4%)
Query: 3 KMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLH 62
KML+D G VTNDG IL LDV HPA K ++EL++ QD E+GDGTTSV+++A E+L
Sbjct: 51 KMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLK 110
Query: 63 VAEEFIDKNYHPTVICRAYNKALEDAVAVLDKI-AMPIDTNDRATMLGLVKSCIGTKFTS 121
A E + HPT I + AL +A+ ++++ + +DT + T++ + K+ + +K
Sbjct: 111 RANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKIIG 170
Query: 122 QFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVV 181
D +++ +DA V +G + +K + V K G +S ++ G N V
Sbjct: 171 ADSDFFSNMVVDALLAVKTQNSKGEIKYPVKA-VNVLKAHGKSATESLLVPGYALNC-TV 228
Query: 182 APGKMRRKIV--NPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQI 239
A M ++I N +I LD L+ + + E E + K E + +I
Sbjct: 229 ASQAMPKRIAGGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKI 288
Query: 240 LKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDEL--QE 297
+ +V+T KG+ DL +A + +RR +K D RIA+A GA +V+ L +E
Sbjct: 289 IDAGAQVVLTTKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEE 348
Query: 298 SDVGTGAGLFE---VKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSV 354
+ + GL + K D+ I + +++LRGA+ L+E+ER+L D++SV
Sbjct: 349 TFESSYLGLCDEVVQAKFSDDECILIKGTSKHSSSSIILRGANDYSLDEMERSLHDSLSV 408
Query: 355 ARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGI 414
+ +++ +VPGGG E ++ L ++++ E+ A A IP+TLA N
Sbjct: 409 VKRTLESGNVVPGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAK 468
Query: 415 NVIRTMTALQGKHANGENAW-----------IGIDGNTGAISDMKERKIWDAYNVKAQTF 463
+ + L+ HA + A G+D G I D + + K ++
Sbjct: 469 DSSELVAKLRSYHAASQMAKPEDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSL 528
Query: 464 KTAIEAACMLLRIDDIVS 481
K+A+EA +LRID +++
Sbjct: 529 KSALEACVAILRIDTMIT 546
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 152/487 (31%), Positives = 258/487 (52%), Gaps = 20/487 (4%)
Query: 1 MLKMLLDASGGI-VVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGE 59
M K+L AS +VTNDG IL+ + + +PAAK ++ +S+ QD+EVGDGTTSV VL+ E
Sbjct: 42 MDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAE 101
Query: 60 MLHVAEEFIDKN-YHPTVICRAYNKALEDAVAVLDKIAMPIDTND----RATMLGLVKSC 114
+L AE+ ID++ HP I Y A A+ L K A+ +++D R ++ + K+
Sbjct: 102 LLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVD-NSHDKTMFREDLIHIAKTT 160
Query: 115 IGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGV 174
+ +K SQ D A+LA +A + +G ++ +I++ K+ GG+L DS + +G
Sbjct: 161 LSSKILSQDKDHFAELATNAILRL-----KGSTNLE---HIQIIKILGGKLSDSFLDEGF 212
Query: 175 MFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGE-NQTNAELVKEEDWEVLLKMEEEYIE 233
+ K ++I N +I++ ++ L+ K + T ++ L K E E ++
Sbjct: 213 ILAKKF--GNNQPKRIENAKILIANTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMK 270
Query: 234 NLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPD 293
N +I KF + I + + D + G+++I R+A G +V+ D
Sbjct: 271 NKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHADFEGVERLALVTGGEVVSTFD 330
Query: 294 ELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMS 353
E + +G + E+ +G++ F CK +ACT++LRGA+ L+E ER+L DA+S
Sbjct: 331 EPSKCKLGECDVIEEIM-LGEQPFLKFSGCKAGEACTIVLRGATDQTLDEAERSLHDALS 389
Query: 354 VARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCG 413
V K + V GGG E+ +S + ++ +I+G + EA A A +P LA N G
Sbjct: 390 VLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAG 449
Query: 414 INVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACML 473
+ ++ L+ NG + G+D N G I+DM++ I ++Y +K +A EAA +L
Sbjct: 450 FDSSELVSKLRSSIYNGISTS-GLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVL 508
Query: 474 LRIDDIV 480
LR+D+I+
Sbjct: 509 LRVDNII 515
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 189 bits (479), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 130/498 (26%), Positives = 251/498 (50%), Gaps = 25/498 (5%)
Query: 2 LKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEML 61
LKML+D +G I +T DG +L E+ + P A + + QDE GDGTT+V+ L GE+L
Sbjct: 43 LKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELL 102
Query: 62 HVAEEFIDKNYHPTVICRAYNKALEDAVAVLD--KIAMPIDTNDRATMLGLVKSCIGTKF 119
A FI + HP +I + A ++++ LD KI+ +NDR +L + +S + TK
Sbjct: 103 RQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKV 162
Query: 120 TSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKD 179
+ +++ + DA +V D ++ + + ++++ + +D+ +KG++ +
Sbjct: 163 DADLTEVLTPIVTDAVLSV-YDAQADNLDLHMVEIMQMQHLSP---KDTTFIKGLVLDHG 218
Query: 180 VVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQI 239
P M ++ N +++L+ LEY+K E + + + L E ++++ +I
Sbjct: 219 GRHP-DMPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKI 277
Query: 240 LKFK-------PD---LVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIV 289
+ K PD ++I +KG+ ++ +K + A+RR ++ + R+ G
Sbjct: 278 IDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQ 337
Query: 290 NRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQ 349
N ++L +G +GL + IG+E F ++ + DPK+CT+L++G++ L + + ++
Sbjct: 338 NSVEDLSPQILGF-SGLVYQETIGEEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVR 396
Query: 350 DAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSS---IEGIEKWPYEAAAIAFEAIPR 406
D + N++K+ ++PG GA + +S L+ + + +G K EA A A IP+
Sbjct: 397 DGLRAVANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPK 456
Query: 407 TLAQNCGINVIRTMTALQGK----HANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQT 462
TL +N G + + + ++ + + E ++G+D N G D IWD+Y V
Sbjct: 457 TLVKNSGFDPLDVLAMVEDELDDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNA 516
Query: 463 FKTAIEAACMLLRIDDIV 480
A A LL D+++
Sbjct: 517 ITGATGIASNLLLCDELL 534
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 182 bits (461), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 146/497 (29%), Positives = 246/497 (49%), Gaps = 27/497 (5%)
Query: 1 MLKMLLDAS--GGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAG 58
M K+LL + ++VTNDG IL+ + V +PAAK ++++SR QD+EVGDGTTSV VLA
Sbjct: 35 MDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAA 94
Query: 59 EMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTND---RATMLGLVKSCI 115
E+L AE I K HP I + +A + A L A+ +++ R ++ + + +
Sbjct: 95 ELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTL 154
Query: 116 GTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVM 175
+K + D LA++A + G G E I V K GG L DS + +G +
Sbjct: 155 SSKLLTHHKDHFTKLAVEAVLRLK---GSGNLEA-----IHVIKKLGGSLADSYLDEGFL 206
Query: 176 FNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEE---EYI 232
+K + ++I N +I++ ++ ++ K + V+ + + ++E E +
Sbjct: 207 LDKKIGV--NQPKRIENAKILIANTGMDTDK--IKIFGSRVRVDSTAKVAEIEHAEKEKM 262
Query: 233 ENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRP 292
+ +ILK + I + + + AGV AI R+A G I +
Sbjct: 263 KEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGGEIASTF 322
Query: 293 DELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAM 352
D + +G+ L E IG++ +ACT++LRGA++ +L+E ER+L DA+
Sbjct: 323 DHPELVKLGS-CKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDAL 381
Query: 353 SVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNC 412
V +K+ + V GGG +E+ ++ + Q +S G E E+ A A +P +A N
Sbjct: 382 CVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNA 441
Query: 413 GINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACM 472
G + + L+ H+ G+ G+D G I DM I +++ VK Q +A EAA +
Sbjct: 442 GYDSADLVAQLRAAHSEGKTTA-GLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEV 500
Query: 473 LLRIDDIVSGIKKKQAP 489
+LR+D+I+ K AP
Sbjct: 501 ILRVDNII-----KAAP 512
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 175 bits (443), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 143/485 (29%), Positives = 245/485 (50%), Gaps = 16/485 (3%)
Query: 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 60
M KM+++ + VTND ILREL+V HPAAK ++ S Q++EVGDGT V+V AG +
Sbjct: 36 MNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGAL 95
Query: 61 LHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT 120
L +AEE + + + Y A + A +L + N R + V S + T
Sbjct: 96 LELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRD--VDEVSSLLHTSVM 153
Query: 121 S-QFGD--LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFN 177
S Q+G+ +A L A ++ D G VD I+V K+ G + S VL G++F
Sbjct: 154 SKQYGNEVFLAKLIAQACVSIFPDSGH--FNVD---NIRVCKILGSGVHSSSVLHGMVFK 208
Query: 178 KDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCM 237
K+ G + + + +I + P + E + + E+ K EE ++
Sbjct: 209 KE--TEGDVT-SVKDAKIAVYSCPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQVK 265
Query: 238 QILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQE 297
I ++V+T ++D+A HY +K + +R K D R+ K GA + R +
Sbjct: 266 AIADTGANVVVTGGRVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLNPPVL 325
Query: 298 SDVGTGAGLFEVKKIGD-EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVAR 356
++G ++ + ++GD + F + +D T++LRG++ +L++++ER + D ++ +
Sbjct: 326 EEMGHCDSVY-LSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFK 384
Query: 357 NIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINV 416
+ ++ +LVPGGGATE+ ++ + + G+E++ + A AFEAIPR LA+N G+
Sbjct: 385 VLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKA 444
Query: 417 IRTMTALQGKHANG-ENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLR 475
++ L H G +N + I+ A+ DM E + D Y K K A AA +LR
Sbjct: 445 NEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLR 504
Query: 476 IDDIV 480
+D I+
Sbjct: 505 VDQII 509
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 97/155 (62%), Gaps = 2/155 (1%)
Query: 171 LKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEE 230
+ G++ +K+ V PG M + + +I LLD+PLE KK E TN + + L EE
Sbjct: 1 MNGIIVDKEKVHPG-MPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEEN 59
Query: 231 YIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVN 290
+ + +I ++VIT+KG+ D+A HYLS+AG+ A+RR++K+D +++AKA GA IV+
Sbjct: 60 MLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVS 119
Query: 291 RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKD 325
DE+ SD+GT + +V K+G+++ F+ K+
Sbjct: 120 TIDEISSSDLGTAERVEQV-KVGEDYMTFVTGSKN 153
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 171 LKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEE 230
+ G++ +K+ V KM + N +I L+DS LE KK E + ++ + L E
Sbjct: 1 MSGIVIDKEKV-HSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETN 59
Query: 231 YIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVN 290
+ + +I K ++V+ +KG+ D+A HYL+K G+ A+RR++K+D ++AKA GA IV
Sbjct: 60 TFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVT 119
Query: 291 RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKD 325
D+L S +G A E +KIGD+ F++ CK+
Sbjct: 120 DLDDLTPSVLGE-AETVEERKIGDDRMTFVMGCKN 153
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 114/514 (22%), Positives = 203/514 (39%), Gaps = 80/514 (15%)
Query: 10 GGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAE 65
G +TNDG +I +E+++ P A+ + E+++ D+ GDGTT+ VLA ++
Sbjct: 2 GAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGL 61
Query: 66 EFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGD 125
+ +P + R KA+E L K A ++T ++ + + GD
Sbjct: 62 RNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKEQIAATAAISAG-----DQSIGD 116
Query: 126 LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEK--VPGGQLEDS---RVLKGVMFNKDV 180
LIA+ A+D GV I VE+ G QLE + R KG + V
Sbjct: 117 LIAE-AMDKVGNEGV--------------ITVEESNTFGLQLELTEGMRFDKGYISGYFV 161
Query: 181 VAPGKMRRKIVNPRIILLDSP----------LEYKKGENQTNAELVKEEDWEVLLKMEEE 230
P + + +P I+L+ S LE G + + ++ + E L +
Sbjct: 162 TDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVN 221
Query: 231 YIENLCMQILKFKP-----------DLVITEKG--LSDLACHYLSKAGVSAIRRLRKT-- 275
I + P D+ I G +S+ L A +S + + RK
Sbjct: 222 KIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVV 281
Query: 276 --DNNRIAKACGAV--IVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTV 331
D I + G I R ++++ ++ ++ +K+ + K V
Sbjct: 282 TKDETTIVEGAGDTDAIAGRVAQIRQ-EIENSDSDYDREKLQERL------AKLAGGVAV 334
Query: 332 LLRGASKDL-LNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIE 390
+ GA+ ++ L E + ++DA+ A+ ++ +V GGG T L + TL + +EG E
Sbjct: 335 IKAGAATEVELKERKHRIEDAVRNAKAAVEE-GIVAGGGVTLLQAAPTLDE--LKLEGDE 391
Query: 391 KWPYEAAAIAFEAIPRTLAQNCGIN---VIRTMTALQGKHANGENAWIGIDGNTGAISDM 447
+A EA + +A N G+ V + L H G++ TG D+
Sbjct: 392 ATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPAGH--------GLNAQTGVYEDL 443
Query: 448 KERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 481
+ D V + A A + L + +V+
Sbjct: 444 LAAGVADPVKVTRSALQNAASIAGLFLTTEAVVA 477
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 114/514 (22%), Positives = 203/514 (39%), Gaps = 80/514 (15%)
Query: 10 GGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAE 65
G +TNDG +I +E+++ P A+ + E+++ D+ GDGTT+ VLA ++
Sbjct: 44 GAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGL 103
Query: 66 EFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGD 125
+ +P + R KA+E L K A ++T ++ + + GD
Sbjct: 104 RNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKEQIAATAAISAG-----DQSIGD 158
Query: 126 LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEK--VPGGQLEDS---RVLKGVMFNKDV 180
LIA+ A+D GV I VE+ G QLE + R KG + V
Sbjct: 159 LIAE-AMDKVGNEGV--------------ITVEESNTFGLQLELTEGMRFDKGYISGYFV 203
Query: 181 VAPGKMRRKIVNPRIILLDSP----------LEYKKGENQTNAELVKEEDWEVLLKMEEE 230
P + + +P I+L+ S LE G + + ++ + E L +
Sbjct: 204 TDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVN 263
Query: 231 YIENLCMQILKFKP-----------DLVITEKG--LSDLACHYLSKAGVSAIRRLRKT-- 275
I + P D+ I G +S+ L A +S + + RK
Sbjct: 264 KIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVV 323
Query: 276 --DNNRIAKACGAV--IVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTV 331
D I + G I R ++++ ++ ++ +K+ + K V
Sbjct: 324 TKDETTIVEGAGDTDAIAGRVAQIRQ-EIENSDSDYDREKLQERL------AKLAGGVAV 376
Query: 332 LLRGASKDL-LNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIE 390
+ GA+ ++ L E + ++DA+ A+ ++ +V GGG T L + TL + +EG E
Sbjct: 377 IKAGAATEVELKERKHRIEDAVRNAKAAVEE-GIVAGGGVTLLQAAPTLDE--LKLEGDE 433
Query: 391 KWPYEAAAIAFEAIPRTLAQNCGIN---VIRTMTALQGKHANGENAWIGIDGNTGAISDM 447
+A EA + +A N G+ V + L H G++ TG D+
Sbjct: 434 ATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPAGH--------GLNAQTGVYEDL 485
Query: 448 KERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 481
+ D V + A A + L + +V+
Sbjct: 486 LAAGVADPVKVTRSALQNAASIAGLFLTTEAVVA 519
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 10/160 (6%)
Query: 336 ASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYE 395
A++ L E + +DA++ R ++ +VPGGG T L + +++ +EG E +
Sbjct: 382 ATETELKEKKHRFEDALNATRAAVEE-GIVPGGGVTLLRAISAVEELIKKLEGDEATGAK 440
Query: 396 AAAIAFEAIPRTLAQNCGI--NVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIW 453
A E R +A+N G +VI +Q A +N G + TG DM E I
Sbjct: 441 IVRRALEEPARQIAENAGYEGSVI-----VQQILAETKNPRYGFNAATGEFVDMVEAGIV 495
Query: 454 DAYNVKAQTFKTAIEAACMLLRIDDIVSGI--KKKQAPGS 491
D V + A ++L + +V+ KK+ P S
Sbjct: 496 DPAKVTRSALQNAASIGALILTTEAVVAEKPEKKESTPAS 535
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 10 GGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAE 65
G +T DG + +E+++ + A+ + E++ ++ GDGTT+ VLA ++
Sbjct: 44 GSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGL 103
Query: 66 EFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPID 100
+ + +P + R KA+E AV + +A+P++
Sbjct: 104 KNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVE 138
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 91/185 (49%), Gaps = 25/185 (13%)
Query: 4 MLLDAS-GGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQDEEVGDGTTSVIVLAG 58
++LD S G +T DG ++ RE+++ + A+ + E++ ++ GDGTT+ VLA
Sbjct: 37 VVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQ 96
Query: 59 EMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTK 118
++ + + +P + R +KA+ AV L +++P C +K
Sbjct: 97 AIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVP---------------CSDSK 141
Query: 119 FTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNK 178
+Q G + A ++ TVG + + + +V + I VE G Q ++ V++G+ F++
Sbjct: 142 AIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGLQ-DELDVVEGMQFDR 196
Query: 179 DVVAP 183
++P
Sbjct: 197 GYLSP 201
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 91/185 (49%), Gaps = 25/185 (13%)
Query: 4 MLLDAS-GGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQDEEVGDGTTSVIVLAG 58
++LD S G +T DG ++ RE+++ + A+ + E++ ++ GDGTT+ VLA
Sbjct: 37 VVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQ 96
Query: 59 EMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTK 118
++ + + +P + R +KA+ AV L +++P C +K
Sbjct: 97 AIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVP---------------CSDSK 141
Query: 119 FTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNK 178
+Q G + A ++ TVG + + + +V + I VE G Q ++ V++G+ F++
Sbjct: 142 AIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGLQ-DELDVVEGMQFDR 196
Query: 179 DVVAP 183
++P
Sbjct: 197 GYLSP 201
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 91/185 (49%), Gaps = 25/185 (13%)
Query: 4 MLLDAS-GGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQDEEVGDGTTSVIVLAG 58
++LD S G +T DG ++ RE+++ + A+ + E++ ++ GDGTT+ VLA
Sbjct: 37 VVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQ 96
Query: 59 EMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTK 118
++ + + +P + R +KA+ AV L +++P C +K
Sbjct: 97 AIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVP---------------CSDSK 141
Query: 119 FTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNK 178
+Q G + A ++ TVG + + + +V + I VE G Q ++ V++G+ F++
Sbjct: 142 AIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGLQ-DELDVVEGMQFDR 196
Query: 179 DVVAP 183
++P
Sbjct: 197 GYLSP 201
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 91/185 (49%), Gaps = 25/185 (13%)
Query: 4 MLLDAS-GGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQDEEVGDGTTSVIVLAG 58
++LD S G +T DG ++ RE+++ + A+ + E++ ++ GDGTT+ VLA
Sbjct: 38 VVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQ 97
Query: 59 EMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTK 118
++ + + +P + R +KA+ AV L +++P C +K
Sbjct: 98 AIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVP---------------CSDSK 142
Query: 119 FTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNK 178
+Q G + A ++ TVG + + + +V + I VE G Q ++ V++G+ F++
Sbjct: 143 AIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGLQ-DELDVVEGMQFDR 197
Query: 179 DVVAP 183
++P
Sbjct: 198 GYLSP 202
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 91/185 (49%), Gaps = 25/185 (13%)
Query: 4 MLLDAS-GGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQDEEVGDGTTSVIVLAG 58
++LD S G +T DG ++ RE+++ + A+ + E++ ++ GDGTT+ VLA
Sbjct: 37 VVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQ 96
Query: 59 EMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTK 118
++ + + +P + R +KA+ AV L +++P C +K
Sbjct: 97 AIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVP---------------CSDSK 141
Query: 119 FTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNK 178
+Q G + A ++ TVG + + + +V + I VE G Q ++ V++G+ F++
Sbjct: 142 AIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGLQ-DELDVVEGMQFDR 196
Query: 179 DVVAP 183
++P
Sbjct: 197 GYLSP 201
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 91/185 (49%), Gaps = 25/185 (13%)
Query: 4 MLLDAS-GGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQDEEVGDGTTSVIVLAG 58
++LD S G +T DG ++ RE+++ + A+ + E++ ++ GDGTT+ VLA
Sbjct: 37 VVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQ 96
Query: 59 EMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTK 118
++ + + +P + R +KA+ AV L +++P C +K
Sbjct: 97 AIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVP---------------CSDSK 141
Query: 119 FTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNK 178
+Q G + A ++ TVG + + + +V + I VE G Q ++ V++G+ F++
Sbjct: 142 AIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGLQ-DELDVVEGMQFDR 196
Query: 179 DVVAP 183
++P
Sbjct: 197 GYLSP 201
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|B Chain B, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|C Chain C, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|D Chain D, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|E Chain E, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|F Chain F, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|G Chain G, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|H Chain H, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|I Chain I, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|J Chain J, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|K Chain K, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|L Chain L, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|M Chain M, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|N Chain N, Crystal Structure Of The Chaperonin Groel-E461k
Length = 548
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 91/185 (49%), Gaps = 25/185 (13%)
Query: 4 MLLDAS-GGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQDEEVGDGTTSVIVLAG 58
++LD S G +T DG ++ RE+++ + A+ + E++ ++ GDGTT+ VLA
Sbjct: 38 VVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQ 97
Query: 59 EMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTK 118
++ + + +P + R +KA+ AV L +++P C +K
Sbjct: 98 AIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVP---------------CSDSK 142
Query: 119 FTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNK 178
+Q G + A ++ TVG + + + +V + I VE G Q ++ V++G+ F++
Sbjct: 143 AIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGLQ-DELDVVEGMQFDR 197
Query: 179 DVVAP 183
++P
Sbjct: 198 GYLSP 202
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 91/185 (49%), Gaps = 25/185 (13%)
Query: 4 MLLDAS-GGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQDEEVGDGTTSVIVLAG 58
++LD S G +T DG ++ RE+++ + A+ + E++ ++ GDGTT+ VLA
Sbjct: 38 VVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQ 97
Query: 59 EMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTK 118
++ + + +P + R +KA+ AV L +++P C +K
Sbjct: 98 AIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP---------------CSDSK 142
Query: 119 FTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNK 178
+Q G + A ++ TVG + + + +V + I VE G Q ++ V++G+ F++
Sbjct: 143 AIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGLQ-DELDVVEGMQFDR 197
Query: 179 DVVAP 183
++P
Sbjct: 198 GYLSP 202
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 91/185 (49%), Gaps = 25/185 (13%)
Query: 4 MLLDAS-GGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQDEEVGDGTTSVIVLAG 58
++LD S G +T DG ++ RE+++ + A+ + E++ ++ GDGTT+ VLA
Sbjct: 37 VVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQ 96
Query: 59 EMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTK 118
++ + + +P + R +KA+ AV L +++P C +K
Sbjct: 97 AIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP---------------CSDSK 141
Query: 119 FTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNK 178
+Q G + A ++ TVG + + + +V + I VE G Q ++ V++G+ F++
Sbjct: 142 AIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGLQ-DELDVVEGMQFDR 196
Query: 179 DVVAP 183
++P
Sbjct: 197 GYLSP 201
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 91/185 (49%), Gaps = 25/185 (13%)
Query: 4 MLLDAS-GGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQDEEVGDGTTSVIVLAG 58
++LD S G +T DG ++ RE+++ + A+ + E++ ++ GDGTT+ VLA
Sbjct: 37 VVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQ 96
Query: 59 EMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTK 118
++ + + +P + R +KA+ AV L +++P C +K
Sbjct: 97 AIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP---------------CSDSK 141
Query: 119 FTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNK 178
+Q G + A ++ TVG + + + +V + I VE G Q ++ V++G+ F++
Sbjct: 142 AIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGLQ-DELDVVEGMQFDR 196
Query: 179 DVVAP 183
++P
Sbjct: 197 GYLSP 201
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 91/185 (49%), Gaps = 25/185 (13%)
Query: 4 MLLDAS-GGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQDEEVGDGTTSVIVLAG 58
++LD S G +T DG ++ RE+++ + A+ + E++ ++ GDGTT+ VLA
Sbjct: 37 VVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQ 96
Query: 59 EMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTK 118
++ + + +P + R +KA+ AV L +++P C +K
Sbjct: 97 AIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP---------------CSDSK 141
Query: 119 FTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNK 178
+Q G + A ++ TVG + + + +V + I VE G Q ++ V++G+ F++
Sbjct: 142 AIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGLQ-DELDVVEGMQFDR 196
Query: 179 DVVAP 183
++P
Sbjct: 197 GYLSP 201
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 91/185 (49%), Gaps = 25/185 (13%)
Query: 4 MLLDAS-GGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQDEEVGDGTTSVIVLAG 58
++LD S G +T DG ++ RE+++ + A+ + E++ ++ GDGTT+ VLA
Sbjct: 37 VVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQ 96
Query: 59 EMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTK 118
++ + + +P + R +KA+ AV L +++P C +K
Sbjct: 97 AIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP---------------CSDSK 141
Query: 119 FTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNK 178
+Q G + A ++ TVG + + + +V + I VE G Q ++ V++G+ F++
Sbjct: 142 AIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGLQ-DELDVVEGMQFDR 196
Query: 179 DVVAP 183
++P
Sbjct: 197 GYLSP 201
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 91/185 (49%), Gaps = 25/185 (13%)
Query: 4 MLLDAS-GGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQDEEVGDGTTSVIVLAG 58
++LD S G +T DG ++ RE+++ + A+ + E++ ++ GDGTT+ VLA
Sbjct: 37 VVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQ 96
Query: 59 EMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTK 118
++ + + +P + R +KA+ AV L +++P C +K
Sbjct: 97 AIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP---------------CSDSK 141
Query: 119 FTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNK 178
+Q G + A ++ TVG + + + +V + I VE G Q ++ V++G+ F++
Sbjct: 142 AIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGLQ-DELDVVEGMQFDR 196
Query: 179 DVVAP 183
++P
Sbjct: 197 GYLSP 201
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 91/185 (49%), Gaps = 25/185 (13%)
Query: 4 MLLDAS-GGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQDEEVGDGTTSVIVLAG 58
++LD S G +T DG ++ RE+++ + A+ + E++ ++ GDGTT+ VLA
Sbjct: 37 VVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQ 96
Query: 59 EMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTK 118
++ + + +P + R +KA+ AV L +++P C +K
Sbjct: 97 AIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP---------------CSDSK 141
Query: 119 FTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNK 178
+Q G + A ++ TVG + + + +V + I VE G Q ++ V++G+ F++
Sbjct: 142 AIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGLQ-DELDVVEGMQFDR 196
Query: 179 DVVAP 183
++P
Sbjct: 197 GYLSP 201
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 80/174 (45%), Gaps = 24/174 (13%)
Query: 14 VTNDGNAILRELDVA----HPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFID 69
+T DG ++ +E++++ + A+ + E++ ++E GDGTT+ VLA ++ + +
Sbjct: 49 ITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVA 108
Query: 70 KNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIAD 129
+P + R + A V + A P++ + +G + S G F
Sbjct: 109 AGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSSEVAQVGTI-SANGESF---------- 157
Query: 130 LAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAP 183
+G + + ++ V + I VE+ G + E V++G+ F++ ++P
Sbjct: 158 --------IGQQIAEAMQRVGNEGVITVEENKGMETE-VEVVEGMQFDRGYLSP 202
>pdb|1SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With Dana
pdb|1SLL|A Chain A, Sialidase L From Leech Macrobdella Decora
pdb|2SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With 2,7-
Anhydro-Neu5ac, The Reaction Product
pdb|3SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With 2,7-
Anhydro-Neu5ac Prepared By Soaking With 3'-Sialyllactose
pdb|4SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With 2-
Propenyl-Neu5ac, An Inactive Substrate Analogue
Length = 679
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 126 LIADLAIDATTTVGVDLGQGLREVDIKKYIKV--EKVPGGQLEDSRVLKGVMFNKDVVAP 183
L ADL + +G G +EV+ KKY+K+ K G + + KGV++N P
Sbjct: 309 LFADLMPAGIGSSNASVGSGFKEVNGKKYLKLRWHKDAGRAYDYTIREKGVIYNDATNQP 368
Query: 184 GKMR 187
+ R
Sbjct: 369 TEFR 372
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 115 IGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLED-----SR 169
+G + +GD + T G +L + REV ++K IK+ K PG +L D
Sbjct: 108 VGAVYQGLYGDAAVTYIVGETDERGKELVRVTREV-LEKAIKMIK-PGIRLGDVSHCIQE 165
Query: 170 VLKGVMFN--KDVVAPGKMRRKIVNPRIILLDSP---LEYKKGENQTNAELVKEEDWEVL 224
++ V FN +D V G R +P+I +P + +KG +V E DW V+
Sbjct: 166 TVESVGFNVIRDYVGHGVGRELHEDPQIPNYGTPGTGVVLRKGMTLAIEPMVSEGDWRVV 225
Query: 225 LK 226
+K
Sbjct: 226 VK 227
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 349 QDAMSVA---RNIIKNPKLVPGGGATELTVSATL---KQKSSSIEGIEKWPYEAAAIAFE 402
++A+ VA R+I+ K G G T V TL K K + I+ + P A+
Sbjct: 49 EEAIPVAITGRDILARAK--NGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTS 106
Query: 403 AIPRTLAQNCGINVIRTM--TALQGKHANGENAWIGIDGNTGAISDMKERKIWD------ 454
+ RTL ++CGI+ + T T L+ + G G + D+ RK+ D
Sbjct: 107 QVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSL 166
Query: 455 -----AYNVKAQTFKTAIEAACMLL 474
A + ++ FKT IE L
Sbjct: 167 FIMDEADKMLSRDFKTIIEQILSFL 191
>pdb|1A87|A Chain A, Colicin N
Length = 321
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 62 HVAEEFID--KNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKF 119
+VA+E + KN+H I R+YN+A+ VL M ++ +D+ ++ K
Sbjct: 154 NVAKEVANDIKNFHGRNI-RSYNEAMASLNKVLANPKMKVNKSDKDAIVNAWKQVNAKDM 212
Query: 120 TSQFGDL-----IADLAI 132
++ G+L +ADLAI
Sbjct: 213 ANKIGNLGKAFKVADLAI 230
>pdb|2GLJ|A Chain A, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|B Chain B, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|C Chain C, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|D Chain D, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|E Chain E, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|F Chain F, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|G Chain G, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|H Chain H, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|I Chain I, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|J Chain J, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|K Chain K, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|L Chain L, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|M Chain M, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|N Chain N, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|O Chain O, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|P Chain P, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|Q Chain Q, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|R Chain R, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|S Chain S, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|T Chain T, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|U Chain U, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|V Chain V, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|W Chain W, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|X Chain X, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
Length = 461
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 306 LFEVKKIGDEFFAFIVDCKDPKAC-TVLLRGASKDLLNEVERNLQDAMS 353
L EV +GD F FI +CK + C T L++ A K RN++D ++
Sbjct: 17 LKEVFALGDRFKNFISNCKTERECVTELIKTAEKSGY----RNIEDILA 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,175,485
Number of Sequences: 62578
Number of extensions: 635161
Number of successful extensions: 1843
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1660
Number of HSP's gapped (non-prelim): 74
length of query: 514
length of database: 14,973,337
effective HSP length: 103
effective length of query: 411
effective length of database: 8,527,803
effective search space: 3504927033
effective search space used: 3504927033
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)