Query 010272
Match_columns 514
No_of_seqs 149 out of 1499
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 22:35:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010272.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010272hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02344 chap_CCT_gamma T-com 100.0 4E-100 9E-105 814.6 56.0 483 1-484 41-523 (525)
2 TIGR02339 thermosome_arch ther 100.0 2.4E-99 5E-104 807.7 56.6 477 1-481 41-518 (519)
3 cd03335 TCP1_alpha TCP-1 (CTT 100.0 9.7E-99 2E-103 803.7 56.7 481 1-484 33-527 (527)
4 TIGR02347 chap_CCT_zeta T-comp 100.0 3.5E-98 8E-103 796.1 57.7 478 1-486 41-529 (531)
5 cd03343 cpn60 cpn60 chaperonin 100.0 5.1E-98 1E-102 798.4 56.4 477 1-482 40-516 (517)
6 cd03336 TCP1_beta TCP-1 (CTT o 100.0 2.3E-97 5E-102 790.6 57.7 473 1-485 38-516 (517)
7 cd03339 TCP1_epsilon TCP-1 (CT 100.0 1.9E-97 4E-102 793.6 55.7 475 1-481 48-526 (526)
8 TIGR02342 chap_CCT_delta T-com 100.0 2.8E-97 6E-102 790.0 56.2 477 1-482 34-516 (517)
9 TIGR02340 chap_CCT_alpha T-com 100.0 9.6E-97 2E-101 789.2 58.6 481 1-484 37-531 (536)
10 PTZ00212 T-complex protein 1 s 100.0 7.8E-97 2E-101 788.6 57.4 472 1-484 47-527 (533)
11 cd03340 TCP1_eta TCP-1 (CTT or 100.0 7.7E-97 2E-101 788.9 57.2 474 1-483 41-520 (522)
12 TIGR02343 chap_CCT_epsi T-comp 100.0 5.2E-97 1E-101 789.0 55.4 476 1-482 52-531 (532)
13 cd03338 TCP1_delta TCP-1 (CTT 100.0 2.2E-96 5E-101 784.9 56.1 475 1-481 33-514 (515)
14 KOG0361 Chaperonin complex com 100.0 2.3E-98 5E-103 714.5 36.0 480 1-490 45-530 (543)
15 TIGR02341 chap_CCT_beta T-comp 100.0 1.9E-95 4E-100 774.8 57.6 473 1-485 39-517 (519)
16 TIGR02345 chap_CCT_eta T-compl 100.0 9E-96 2E-100 779.3 54.8 472 1-482 43-519 (522)
17 TIGR02346 chap_CCT_theta T-com 100.0 2.6E-95 6E-100 775.7 57.7 474 1-484 43-521 (531)
18 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 4.3E-94 9.3E-99 759.0 53.1 445 1-482 37-482 (484)
19 cd03337 TCP1_gamma TCP-1 (CTT 100.0 5.3E-94 1.1E-98 758.3 49.8 438 1-481 41-479 (480)
20 cd03341 TCP1_theta TCP-1 (CTT 100.0 9.3E-90 2E-94 724.5 51.1 434 1-482 33-471 (472)
21 KOG0358 Chaperonin complex com 100.0 3.3E-91 7.2E-96 664.3 31.6 476 1-482 51-533 (534)
22 cd00309 chaperonin_type_I_II c 100.0 4.8E-89 1E-93 721.0 50.7 432 1-481 33-464 (464)
23 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 5.4E-88 1.2E-92 720.3 50.1 470 1-484 14-485 (485)
24 COG0459 GroL Chaperonin GroEL 100.0 3.9E-88 8.4E-93 708.5 46.9 474 1-487 36-518 (524)
25 KOG0363 Chaperonin complex com 100.0 6.5E-88 1.4E-92 638.9 36.5 478 1-490 43-526 (527)
26 KOG0364 Chaperonin complex com 100.0 1.1E-88 2.4E-93 658.1 28.1 482 1-487 44-525 (527)
27 PRK12849 groEL chaperonin GroE 100.0 5.6E-84 1.2E-88 686.3 49.4 431 1-487 35-527 (542)
28 PRK00013 groEL chaperonin GroE 100.0 5.9E-84 1.3E-88 686.1 48.9 432 1-486 35-527 (542)
29 PRK12851 groEL chaperonin GroE 100.0 1.6E-83 3.4E-88 683.5 50.0 431 1-486 36-527 (541)
30 PRK12850 groEL chaperonin GroE 100.0 1.5E-82 3.3E-87 676.4 50.2 431 1-486 36-527 (544)
31 PTZ00114 Heat shock protein 60 100.0 2E-82 4.3E-87 677.9 50.7 434 1-488 47-545 (555)
32 PRK12852 groEL chaperonin GroE 100.0 6E-82 1.3E-86 673.5 49.4 431 1-486 36-528 (545)
33 cd03344 GroEL GroEL_like type 100.0 6.4E-82 1.4E-86 669.0 48.6 425 1-481 33-519 (520)
34 TIGR02348 GroEL chaperonin Gro 100.0 1.8E-81 4E-86 666.8 47.9 427 1-483 34-522 (524)
35 CHL00093 groEL chaperonin GroE 100.0 1.2E-80 2.5E-85 661.5 45.5 431 1-484 35-526 (529)
36 KOG0360 Chaperonin complex com 100.0 4E-82 8.6E-87 618.1 28.1 483 1-487 44-540 (545)
37 PLN03167 Chaperonin-60 beta su 100.0 3.1E-80 6.7E-85 661.3 44.3 432 1-484 91-582 (600)
38 PRK14104 chaperonin GroEL; Pro 100.0 1.9E-79 4.1E-84 652.2 48.7 433 1-488 36-530 (546)
39 KOG0362 Chaperonin complex com 100.0 1.2E-78 2.6E-83 597.8 42.8 471 1-487 51-525 (537)
40 KOG0359 Chaperonin complex com 100.0 6.3E-78 1.4E-82 582.5 30.5 468 2-482 43-514 (520)
41 KOG0357 Chaperonin complex com 100.0 8.8E-62 1.9E-66 457.1 20.4 343 1-484 53-397 (400)
42 KOG0356 Mitochondrial chaperon 100.0 3.6E-55 7.8E-60 438.5 27.1 428 5-490 53-544 (550)
43 cd03334 Fab1_TCP TCP-1 like do 100.0 1.2E-40 2.7E-45 323.6 27.0 235 121-365 17-257 (261)
44 cd03333 chaperonin_like chaper 100.0 3.8E-36 8.2E-41 284.8 24.6 208 105-361 2-209 (209)
45 KOG0230 Phosphatidylinositol-4 99.9 1.4E-23 3E-28 231.0 17.0 239 122-370 332-575 (1598)
46 PF02579 Nitro_FeMo-Co: Dinitr 62.0 26 0.00057 27.7 6.0 38 235-273 45-82 (94)
47 COG1433 Uncharacterized conser 54.9 55 0.0012 27.9 6.8 51 235-286 57-107 (121)
48 cd00851 MTH1175 This uncharact 53.7 40 0.00087 27.1 5.9 38 235-273 55-92 (103)
49 cd00562 NifX_NifB This CD repr 43.5 73 0.0016 25.5 5.9 37 236-273 54-90 (102)
50 PF00841 Protamine_P2: Sperm h 37.9 21 0.00046 27.7 1.6 30 482-511 8-37 (91)
51 KOG1481 Cysteine synthase [Ami 36.5 14 0.0003 36.0 0.5 57 311-369 46-102 (391)
52 TIGR03659 IsdE heme ABC transp 34.1 1.1E+02 0.0023 30.2 6.4 50 237-286 85-140 (289)
53 TIGR00129 fdhD_narQ formate de 33.4 65 0.0014 30.9 4.6 41 235-275 184-224 (237)
54 cd01143 YvrC Periplasmic bindi 33.1 1.4E+02 0.003 27.0 6.7 50 237-286 54-110 (195)
55 cd01144 BtuF Cobalamin binding 31.5 1.4E+02 0.0031 28.2 6.7 51 237-287 51-108 (245)
56 PRK00724 formate dehydrogenase 31.3 72 0.0015 31.2 4.5 42 234-275 212-253 (263)
57 PRK07283 hypothetical protein; 30.9 2.1E+02 0.0046 23.2 6.6 50 234-286 25-78 (98)
58 PRK09534 btuF corrinoid ABC tr 28.8 1.5E+02 0.0032 30.4 6.6 51 236-286 112-169 (359)
59 COG3962 Acetolactate synthase 28.7 50 0.0011 34.7 3.0 41 345-386 216-256 (617)
60 COG1526 FdhD Uncharacterized p 28.2 82 0.0018 30.8 4.2 43 234-276 212-254 (266)
61 cd00852 NifB NifB belongs to a 25.5 2.3E+02 0.005 23.0 6.1 31 242-273 64-94 (106)
62 PRK13602 putative ribosomal pr 24.9 2.5E+02 0.0053 22.0 5.7 51 234-287 18-72 (82)
63 TIGR03151 enACPred_II putative 24.4 3E+02 0.0066 27.4 7.8 54 234-287 78-131 (307)
64 PRK07714 hypothetical protein; 24.3 3.3E+02 0.0072 22.0 6.7 50 234-286 25-78 (100)
65 PF02634 FdhD-NarQ: FdhD/NarQ 24.2 96 0.0021 29.7 4.0 41 234-274 183-223 (236)
66 cd04743 NPD_PKS 2-Nitropropane 24.1 2.8E+02 0.006 28.0 7.3 53 234-287 73-125 (320)
67 smart00574 POX domain associat 22.9 1.3E+02 0.0028 26.2 4.0 46 339-384 84-129 (140)
68 KOG1593 Asparaginase [Amino ac 22.8 1.4E+02 0.003 28.9 4.5 36 345-380 105-142 (349)
69 PRK03379 vitamin B12-transport 22.2 2.3E+02 0.0049 27.3 6.3 50 237-286 66-122 (260)
70 PF02603 Hpr_kinase_N: HPr Ser 21.8 88 0.0019 26.7 2.9 46 227-272 65-112 (127)
71 PRK06683 hypothetical protein; 21.5 3.9E+02 0.0084 20.9 6.2 50 235-287 19-72 (82)
72 PRK04175 rpl7ae 50S ribosomal 21.1 3.7E+02 0.008 22.8 6.5 50 233-285 36-90 (122)
73 PRK13600 putative ribosomal pr 20.6 4.3E+02 0.0094 20.9 6.5 51 233-286 19-73 (84)
74 cd00853 NifX NifX belongs to a 20.2 1.8E+02 0.0039 23.5 4.4 31 242-273 60-90 (102)
75 cd01138 FeuA Periplasmic bindi 20.1 2.5E+02 0.0055 26.5 6.1 49 237-286 60-112 (248)
76 cd01141 TroA_d Periplasmic bin 20.1 1.4E+02 0.003 26.9 4.1 34 236-269 62-96 (186)
No 1
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.3e-100 Score=814.56 Aligned_cols=483 Identities=71% Similarity=1.129 Sum_probs=463.3
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|||||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||||+|+|+++||+++.+|+++|+||..|++|
T Consensus 41 ~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g 120 (525)
T TIGR02344 41 MLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRA 120 (525)
T ss_pred CCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEEe
Q 010272 81 YNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKV 160 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~i 160 (514)
|+.|++.++++|++++++++..+.+.|.++++|+++||+.++|.+.+++++++|+..++++..++...+|+..+|+|+++
T Consensus 121 ~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki 200 (525)
T TIGR02344 121 YKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKI 200 (525)
T ss_pred HHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEe
Confidence 99999999999999999998777888999999999999999999999999999999998642122346787777999999
Q ss_pred cCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHH
Q 010272 161 PGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240 (514)
Q Consensus 161 ~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i~ 240 (514)
+|++++||++++|++|++++.++ .|+++++||||++++++|++.+++.++++.+.+++++.+++++|++++++++++|.
T Consensus 201 ~Gg~~~dS~lv~Gvvi~k~~~~~-~m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~ 279 (525)
T TIGR02344 201 PGGDIEDSCVLKGVMINKDVTHP-KMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDII 279 (525)
T ss_pred cCCChHhcCcccceEEecccCCC-CCccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEE
Q 010272 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFI 320 (514)
Q Consensus 241 ~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l 320 (514)
+.|++||++++++++.+++||.++||++++++++++|+|||++|||+++++++++++.++|+.|+.|+++++|+++|++|
T Consensus 280 ~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~ 359 (525)
T TIGR02344 280 AVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFF 359 (525)
T ss_pred hcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999997699999999999999999
Q ss_pred EcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHHHHh
Q 010272 321 VDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIA 400 (514)
Q Consensus 321 ~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~a 400 (514)
++|.+++.|||+|||+|+.+++|+||+++||+++++++++++++|||||++|++||.+|+++++..++.+++++++|++|
T Consensus 360 ~g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~a 439 (525)
T TIGR02344 360 TECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADA 439 (525)
T ss_pred EcCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred hhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhhhh
Q 010272 401 FEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 480 (514)
Q Consensus 401 L~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii 480 (514)
|+.||++||+|||+|+.+++.+|+..|.++++.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|
T Consensus 440 l~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii 519 (525)
T TIGR02344 440 LEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIV 519 (525)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence 99999999999999999999999999987644789999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 010272 481 SGIK 484 (514)
Q Consensus 481 ~~~~ 484 (514)
...|
T Consensus 520 ~~~~ 523 (525)
T TIGR02344 520 SGVK 523 (525)
T ss_pred hcCC
Confidence 7765
No 2
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=2.4e-99 Score=807.74 Aligned_cols=477 Identities=40% Similarity=0.680 Sum_probs=458.9
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|||||+++.|+++|||||+||+++|+++||+++|+++++++|++++||||||+++|+++||+++.+++++|+||..|++|
T Consensus 41 ~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~qd~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g 120 (519)
T TIGR02339 41 MDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEG 120 (519)
T ss_pred CCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccc-cchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEE
Q 010272 81 YNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT-SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEK 159 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~-~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~ 159 (514)
|+.|++.++++|++++++++..+++.|.++++|+++||+. +.+.++|++++++|+..+++..++|...+|++ +|+|++
T Consensus 121 ~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~-~I~i~k 199 (519)
T TIGR02339 121 YRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLD-NIKIEK 199 (519)
T ss_pred HHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHH-HeEEEE
Confidence 9999999999999999999876788999999999999998 78899999999999999975322455467775 699999
Q ss_pred ecCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHH
Q 010272 160 VPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQI 239 (514)
Q Consensus 160 i~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i 239 (514)
++|++.++|++++|++|++++.++ .|+++++||||++++++|++++++.+.++.+++.+++.+++++|++++++++++|
T Consensus 200 ~~Ggs~~ds~lv~G~vi~~~~~~~-~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i 278 (519)
T TIGR02339 200 KTGGSIDDTELVEGIVVDKEPVHP-GMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKI 278 (519)
T ss_pred ccCcChhcceeEeeEEEecCCCCC-CCccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEE
Q 010272 240 LKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAF 319 (514)
Q Consensus 240 ~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~ 319 (514)
++.|++||+++++|++.+++||.++||++++++++++|+||+++|||+++++++++++..+|+ |+.++++++|+++|++
T Consensus 279 ~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~-~~~v~~~~ig~~~~~~ 357 (519)
T TIGR02339 279 ADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLARATGAKIVSSIKEITESDLGY-AGLVEERKVGDDKMTF 357 (519)
T ss_pred HhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEeCchhhCChhhccC-CceEEEEEECCeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred EEcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 010272 320 IVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAI 399 (514)
Q Consensus 320 l~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~ 399 (514)
|++|..+..|||+|||+|+.+++|.+|+++||++++++++++|++|||||++|++|+.+|++++...++++++++++|++
T Consensus 358 ~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~ 437 (519)
T TIGR02339 358 VEGCKNPKAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFAD 437 (519)
T ss_pred EEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 99998899999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred hhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhhh
Q 010272 400 AFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDI 479 (514)
Q Consensus 400 aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~i 479 (514)
||+.||++|++|||+|+.+++.+|+..|..++ .++|+|+.+|+++||++.|||||+.||+++|+.|+|+|++|||||++
T Consensus 438 aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~-~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~i 516 (519)
T TIGR02339 438 ALEEIPRILAENAGLDPIDALVELRAKHEKGN-KNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDV 516 (519)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHccC-CceeEEcCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHH
Confidence 99999999999999999999999999887664 68999999999999999999999999999999999999999999999
Q ss_pred hc
Q 010272 480 VS 481 (514)
Q Consensus 480 i~ 481 (514)
|+
T Consensus 517 i~ 518 (519)
T TIGR02339 517 IA 518 (519)
T ss_pred hh
Confidence 85
No 3
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9.7e-99 Score=803.74 Aligned_cols=481 Identities=31% Similarity=0.493 Sum_probs=456.0
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|||||+++.|+++|||||+||+++|+++||+++|++++|++|++++||||||+|+|+++||+++.+|+++|+||..|++|
T Consensus 33 ~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g 112 (527)
T cd03335 33 LDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISG 112 (527)
T ss_pred CceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh-ccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEE
Q 010272 81 YNKALEDAVAVLDK-IAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEK 159 (514)
Q Consensus 81 ~~~a~~~~l~~L~~-~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~ 159 (514)
|+.|++.+++.|++ +++|++..+++.|.++++|+++||+.+++.+.+++++++|+..++....+|...+|++ +|+|++
T Consensus 113 ~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~-~I~i~~ 191 (527)
T cd03335 113 YRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIK-AVNILK 191 (527)
T ss_pred HHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHH-HeEEEE
Confidence 99999999999986 8999876578899999999999999888889999999999999963222344457775 599999
Q ss_pred ecCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHH
Q 010272 160 VPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQI 239 (514)
Q Consensus 160 i~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i 239 (514)
+.|+++.+|++++|++|++++.++ .|++.++||||++++++|++.+++.+..+.+++.+++..+.+.|++++++++++|
T Consensus 192 ~~Ggs~~~s~li~Givi~~~~~~~-~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i 270 (527)
T cd03335 192 AHGKSAKESYLVNGYALNCTRASQ-GMPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKI 270 (527)
T ss_pred ecCcChhhcceeeeEEEecccCCC-CCcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCC------CCCccCCccceEEEEEEC
Q 010272 240 LKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDEL------QESDVGTGAGLFEVKKIG 313 (514)
Q Consensus 240 ~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l------~~~~lG~~~~~v~~~~ig 313 (514)
.+.|++||+++++|++.+++||.++||++++++++++|+|||++|||+++++++++ ++.++|+ |+.++++++|
T Consensus 271 ~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~-~~~v~~~~ig 349 (527)
T cd03335 271 LAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGE-AEEVVQERIG 349 (527)
T ss_pred HHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCcc-CceEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999988665 3447999 9999999999
Q ss_pred CeEEEEEEcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHH
Q 010272 314 DEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWP 393 (514)
Q Consensus 314 ~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~ 393 (514)
+++|++|.+|+++++|||+|||+|+.+++|++|+++||++++++++++|++|||||++|++|+.+|+++++..+++++++
T Consensus 350 ~~~~~~i~g~~~~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~ 429 (527)
T cd03335 350 DDELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLA 429 (527)
T ss_pred CeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred HHHHHHhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCC-------CceEEEeCCCCccccccccccccchHHHHHHHHHH
Q 010272 394 YEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGE-------NAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTA 466 (514)
Q Consensus 394 ~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~-------~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A 466 (514)
+++|++||+.||++||+|||+|+.+++.+|+..|.++. ++++|+|+.+|+++||++.|||||+.+|+++|++|
T Consensus 430 i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A 509 (527)
T cd03335 430 IAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFA 509 (527)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCCcccchhhccceecHHHHHHHHHHH
Confidence 99999999999999999999999999999999998663 46899999999999999999999999999999999
Q ss_pred HHHHHHHhchhhhhcCCc
Q 010272 467 IEAACMLLRIDDIVSGIK 484 (514)
Q Consensus 467 ~e~a~~iL~id~ii~~~~ 484 (514)
+|+|++|||||++|...|
T Consensus 510 ~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 510 TEAAITILRIDDLIKLNP 527 (527)
T ss_pred HHHHHHHHhhcceeecCC
Confidence 999999999999997644
No 4
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.5e-98 Score=796.08 Aligned_cols=478 Identities=30% Similarity=0.563 Sum_probs=456.3
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|||||+++.|+++|||||+||+++|+++||+++|++++|++|++++||||||+++|+++||+++.+|+++|+||..|++|
T Consensus 41 ~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g 120 (531)
T TIGR02347 41 TLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQDDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEG 120 (531)
T ss_pred cceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCC-CCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEE
Q 010272 81 YNKALEDAVAVLDKIAMPID-TNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEK 159 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~~v~-~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~ 159 (514)
|+.|++.++++|+++++++. ..+.+.|.++++|+++||+.++++++|++++++|+..+++ ++. .+|++ +|++.+
T Consensus 121 ~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~---~~~-~i~~~-~I~i~k 195 (531)
T TIGR02347 121 FEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKK---DGE-QIDLF-MVEIME 195 (531)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhh---cCC-CCChh-HeEEEE
Confidence 99999999999999998763 4578899999999999999999999999999999999975 232 46665 489999
Q ss_pred ecCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHH
Q 010272 160 VPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQI 239 (514)
Q Consensus 160 i~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i 239 (514)
..|++.++|++++|++|++++.++ .|+++++||+|++++++|++.+++.+..+.+.+.+++..++..|++++++++++|
T Consensus 196 ~~g~s~~ds~~v~Giv~~~~~~~~-~~~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I 274 (531)
T TIGR02347 196 MKHKSATDTTLIRGLVLDHGARHP-DMPRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKI 274 (531)
T ss_pred ecCCCccccEEEeeEEEecCcCCC-CCceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHcC-------Cc---EEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEE
Q 010272 240 LKFK-------PD---LVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEV 309 (514)
Q Consensus 240 ~~~~-------~~---lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~ 309 (514)
++.+ ++ ||+++++|++.+++||.++||++++++++++|+|||++|||+++++++++++.++|+ |+.+++
T Consensus 275 ~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~-~~~v~~ 353 (531)
T TIGR02347 275 IELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAKRRNMERLTLACGGEALNSVEDLTPECLGW-AGLVYE 353 (531)
T ss_pred HHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCCHHHHHHHHHHhCCEEecccccCCcccccc-ceEEEE
Confidence 9866 25 999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEECCeEEEEEEcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCc
Q 010272 310 KKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGI 389 (514)
Q Consensus 310 ~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~ 389 (514)
+.+|+++|++|++|.+++.|||+|||+|+.+++|++|+++||++++++++++|++|||||++|++|+.+|++++...+++
T Consensus 354 ~~ig~~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~ 433 (531)
T TIGR02347 354 TSIGEEKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGK 433 (531)
T ss_pred EEECCeEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCH
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999998888899
Q ss_pred chHHHHHHHHhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHH
Q 010272 390 EKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEA 469 (514)
Q Consensus 390 ~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~ 469 (514)
+++++++|++||+.||++|++|||+|+.+++.+|+..|.++. .++|+|+.+|+++||++.|||||+.+|+++|++|+|+
T Consensus 434 ~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~-~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~ 512 (531)
T TIGR02347 434 AKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGG-EVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVI 512 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccC-CceeeeccCCCccchhhccCEEcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999897765 6899999999999999999999999999999999999
Q ss_pred HHHHhchhhhhcCCccC
Q 010272 470 ACMLLRIDDIVSGIKKK 486 (514)
Q Consensus 470 a~~iL~id~ii~~~~~~ 486 (514)
|++|||||++|+..|+.
T Consensus 513 a~~iLrID~ii~~~~~~ 529 (531)
T TIGR02347 513 ASQLLLVDEVMRAGRSM 529 (531)
T ss_pred HHHHHhHHHHHhCcccc
Confidence 99999999999886653
No 5
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=5.1e-98 Score=798.45 Aligned_cols=477 Identities=42% Similarity=0.699 Sum_probs=458.2
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++||||||+++|+++|++++.++++.|+||..|++|
T Consensus 40 ~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g 119 (517)
T cd03343 40 MDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEG 119 (517)
T ss_pred CCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEEe
Q 010272 81 YNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKV 160 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~i 160 (514)
|++|++.+++.|++++++++..+.+.|.++++|+++||+.+.+.+.+++++++|+..++.+. .+...+|++ +|+|.++
T Consensus 120 ~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~-~~~~~~~~~-~I~i~k~ 197 (517)
T cd03343 120 YRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKR-DGKYVVDLD-NIKIEKK 197 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhcc-CCCccccHH-HeeEEee
Confidence 99999999999999999987667889999999999999999999999999999999997521 122467775 6999999
Q ss_pred cCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHH
Q 010272 161 PGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240 (514)
Q Consensus 161 ~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i~ 240 (514)
+|+++++|++++|++|++++.++ .|++.++||||++++++|++.+++.++++.+++.+++.+++++|++++++++++|.
T Consensus 198 ~Ggs~~ds~lv~G~v~~~~~~~~-~m~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~ 276 (517)
T cd03343 198 TGGSVDDTELIRGIVIDKEVVHP-GMPKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIA 276 (517)
T ss_pred cCcCHHHcceeeeEEEeccCCCC-CCccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEE
Q 010272 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFI 320 (514)
Q Consensus 241 ~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l 320 (514)
+.|++||+++++|++.+++||.++||++++++++++|+|||++|||+++++++++++.++|+ |+.++++++|+++|++|
T Consensus 277 ~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~tGa~ii~~~~~l~~~~LG~-~~~v~~~~ig~~~~~~~ 355 (517)
T cd03343 277 DTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGE-AELVEERKVGDDKMVFV 355 (517)
T ss_pred hcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHHHhCCEEecchhhCChhhCCc-cceEEEEEECCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred EcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHHHHh
Q 010272 321 VDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIA 400 (514)
Q Consensus 321 ~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~a 400 (514)
++|.++..|||+|||+|+.+++|++|+++||++++|+++++|++|||||++|++++.+|++++...++++++++++|++|
T Consensus 356 ~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~a 435 (517)
T cd03343 356 EGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADA 435 (517)
T ss_pred EcCCCCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 99998999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred hhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhhhh
Q 010272 401 FEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 480 (514)
Q Consensus 401 L~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii 480 (514)
|+.||++|++|||+|+.+++.+|+..|..+. .++|+|+.+|++.||++.|||||+.+|+++|++|+|+|++|||||++|
T Consensus 436 L~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~-~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii 514 (517)
T cd03343 436 LEEIPRTLAENAGLDPIDTLVELRAAHEKGN-KNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVI 514 (517)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHccC-CceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence 9999999999999999999999998887664 789999999999999999999999999999999999999999999999
Q ss_pred cC
Q 010272 481 SG 482 (514)
Q Consensus 481 ~~ 482 (514)
+.
T Consensus 515 ~~ 516 (517)
T cd03343 515 AA 516 (517)
T ss_pred hC
Confidence 64
No 6
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.3e-97 Score=790.61 Aligned_cols=473 Identities=31% Similarity=0.479 Sum_probs=451.4
Q ss_pred CceeeecC--CCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHH
Q 010272 1 MLKMLLDA--SGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVIC 78 (514)
Q Consensus 1 ~~Kmi~~~--~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~ 78 (514)
|||||+++ +|+++|||||+||+++|+++||+++|+++++++|++++||||||+|+|+++||+++.+++++|+||..|+
T Consensus 38 ~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~ 117 (517)
T cd03336 38 MDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTII 117 (517)
T ss_pred CceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 79999998 5999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCC---cHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccce
Q 010272 79 RAYNKALEDAVAVLDKIAMPIDTN---DRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYI 155 (514)
Q Consensus 79 ~g~~~a~~~~l~~L~~~s~~v~~~---~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I 155 (514)
+||+.|.+.++++|++++++++.. +.+.|.++++|+++||+.++++++|++++++|+..++. .+|++ +|
T Consensus 118 ~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~-------~~~~~-~i 189 (517)
T cd03336 118 EGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKG-------SGNLD-AI 189 (517)
T ss_pred HHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhc-------cCCcc-ce
Confidence 999999999999999999988532 36789999999999999999999999999999999852 23443 59
Q ss_pred eEEEecCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccc-cceEEecCHHHHHHHHHHHHHHHHH
Q 010272 156 KVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGEN-QTNAELVKEEDWEVLLKMEEEYIEN 234 (514)
Q Consensus 156 ~i~~i~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~-~~~~~i~~~~~l~~~~~~E~~~~~~ 234 (514)
++++++|+++++|++++|+++++++.+ .|+++++||||++++++|++++++. +.++.+++.+++..+...|++++++
T Consensus 190 ~i~ki~G~s~~ds~l~~G~v~~~~~~~--~~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~ 267 (517)
T cd03336 190 QIIKKLGGSLKDSYLDEGFLLDKKIGV--NQPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKN 267 (517)
T ss_pred eEEEccCCCccceEEEeeEEEecccCC--CCCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999866 4799999999999999999999886 7889999999999999999999999
Q ss_pred HHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECC
Q 010272 235 LCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD 314 (514)
Q Consensus 235 ~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~ 314 (514)
+++.|++.|++++++++.|++.+++||.++||++++++++++|+||+++|||+++++++++++.++|+ |+.++...+|+
T Consensus 268 ~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~tGa~ii~~l~~~~~~~LG~-~~~v~~~~ig~ 346 (517)
T cd03336 268 KVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVTGGEIASTFDHPELVKLGT-CKLIEEIMIGE 346 (517)
T ss_pred HHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecccCCCCcccccc-cceEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred eEEEEEEcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHH
Q 010272 315 EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPY 394 (514)
Q Consensus 315 ~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~ 394 (514)
++|.+|++|++++.|||+|||+|+.+++|.+|+++||++++++++++|++|||||++|++++.+|+++++..++++++++
T Consensus 347 ~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i 426 (517)
T cd03336 347 DKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAI 426 (517)
T ss_pred eEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred HHHHHhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHh
Q 010272 395 EAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLL 474 (514)
Q Consensus 395 ~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL 474 (514)
++|++||+.||++|++|||+|+.+++.+|+..|.+++ .++|+|+.+|+++||++.|||||+.||+++|+.|+|+|++||
T Consensus 427 ~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~-~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL 505 (517)
T cd03336 427 EAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGN-TTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMIL 505 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998775 789999999999999999999999999999999999999999
Q ss_pred chhhhhcCCcc
Q 010272 475 RIDDIVSGIKK 485 (514)
Q Consensus 475 ~id~ii~~~~~ 485 (514)
|||++|...|+
T Consensus 506 ~id~ii~~~~~ 516 (517)
T cd03336 506 RVDDIIKCAPR 516 (517)
T ss_pred hHhHHhhcCCC
Confidence 99999988663
No 7
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.9e-97 Score=793.58 Aligned_cols=475 Identities=34% Similarity=0.586 Sum_probs=452.1
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|||||+++.|+++|||||+||+++|+++||+++|+++++++|++++||||||+++|+++||+++.+|+++|+||..|++|
T Consensus 48 ~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g 127 (526)
T cd03339 48 MDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADG 127 (526)
T ss_pred CcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCC--CcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEE
Q 010272 81 YNKALEDAVAVLDKIAMPIDT--NDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVE 158 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~~v~~--~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~ 158 (514)
|+.|++.+++.|+++++|++. .+.+.|.++++|++++|+.+.+.+.|++++++|+..+... ....+|++ +|+|+
T Consensus 128 ~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~---~~~~~d~~-~I~i~ 203 (526)
T cd03339 128 YEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADL---ERKDVNFE-LIKVE 203 (526)
T ss_pred HHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhc---CCCccchH-HeEEE
Confidence 999999999999999998753 3578899999999999998888999999999999988631 11245554 59999
Q ss_pred EecCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHH
Q 010272 159 KVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQ 238 (514)
Q Consensus 159 ~i~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~ 238 (514)
+++||+++||++++|++|++++.++ .|++.++||||++++++|++++.+.+.++.+++.+++..+.++|++++++++++
T Consensus 204 ki~Ggs~~dS~~v~Givi~~~~~~~-~m~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~ 282 (526)
T cd03339 204 GKVGGRLEDTKLVKGIVIDKDFSHP-QMPKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQ 282 (526)
T ss_pred EecCcCHHHcceeeeEEEecccCCC-CCCceecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 899999999999999999999998889999999999999999999999999999
Q ss_pred HHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECC--eE
Q 010272 239 ILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD--EF 316 (514)
Q Consensus 239 i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~--~~ 316 (514)
+.+.|++||+++++|++.+++||.++||++++++++++|+|||++|||.++++++++++..+|+ |+.|+++.+|. ++
T Consensus 283 i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~LG~-~~~v~~~~ig~~~~~ 361 (526)
T cd03339 283 VKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGK-AGLVREISFGTTKDK 361 (526)
T ss_pred HHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHHHHHhCCEEecchhhCChhhccc-CceEEEEEecCCCcE
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999985 68
Q ss_pred EEEEEcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHH
Q 010272 317 FAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEA 396 (514)
Q Consensus 317 ~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~ 396 (514)
|++|++|++++.|||+|||+|+.+++|++|+++||++++++++++|++|||||++|++++.+|++++...++.+++++++
T Consensus 362 ~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~ 441 (526)
T cd03339 362 MLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRA 441 (526)
T ss_pred EEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred HHHhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhch
Q 010272 397 AAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRI 476 (514)
Q Consensus 397 ~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 476 (514)
|++||+.||++|++|||+|+.+++.+|+..|..+++.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++||||
T Consensus 442 ~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~i 521 (526)
T cd03339 442 FADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKI 521 (526)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999997543478999999999999999999999999999999999999999999
Q ss_pred hhhhc
Q 010272 477 DDIVS 481 (514)
Q Consensus 477 d~ii~ 481 (514)
|++|.
T Consensus 522 D~ii~ 526 (526)
T cd03339 522 DDVIV 526 (526)
T ss_pred ceecC
Confidence 99873
No 8
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.8e-97 Score=789.98 Aligned_cols=477 Identities=33% Similarity=0.556 Sum_probs=455.9
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|||||+++.|+++|||||+|||++|+++||+++|++++|++|++++||||||+++|+++||+++.+|+++|+||..|++|
T Consensus 34 ~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g 113 (517)
T TIGR02342 34 MDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGTTSVVILAGALLGACETLLERGIHPTTISES 113 (517)
T ss_pred CcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEEe
Q 010272 81 YNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKV 160 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~i 160 (514)
|+.|++.+++.|+++++|++..+++.|.++++|++++|+.+.+.++|++++++|+..++.+..+ ..+|++ +|+|.++
T Consensus 114 ~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~--~~~~~~-~i~i~k~ 190 (517)
T TIGR02342 114 FQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPEND--KNVDLN-DIKVVKK 190 (517)
T ss_pred HHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccccC--CccCHH-HeeEEec
Confidence 9999999999999999998766788999999999999999999999999999999999753212 356765 5999999
Q ss_pred cCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHH
Q 010272 161 PGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240 (514)
Q Consensus 161 ~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i~ 240 (514)
.|++.++|++++|++|++++.++.+||+.++||||++++++|++.+++....+.+.+.++++.++++|+++++++++++.
T Consensus 191 ~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~ 270 (517)
T TIGR02342 191 LGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIK 270 (517)
T ss_pred cCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999984389999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEeCCCC-----CHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCe
Q 010272 241 KFKPDLVITEKGL-----SDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDE 315 (514)
Q Consensus 241 ~~~~~lVi~~~~i-----~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~~ 315 (514)
+.|++||+++++| ++.+++||.++||++++++++++|+|||++|||+++++++++++.++|+ |+.+++.++|++
T Consensus 271 ~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tGa~ii~~~~~l~~~~LG~-~~~v~~~~~~~~ 349 (517)
T TIGR02342 271 KTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIGCKPIASIDHFTADKLGS-AELVEEVTTDGG 349 (517)
T ss_pred hcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHCCEEEcchhhcCcccCcC-CceEEEEEECCe
Confidence 9999999999998 9999999999999999999999999999999999999999999999999 999999999999
Q ss_pred EEEEEEcCCC-CCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHH
Q 010272 316 FFAFIVDCKD-PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPY 394 (514)
Q Consensus 316 ~~~~l~~~~~-~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~ 394 (514)
+|.++++|+. ++.|||+|||+|+.+++|.+|+++||+++++++++++++|||||++|++++.+|+++++..++.+++++
T Consensus 350 ~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i 429 (517)
T TIGR02342 350 KIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCV 429 (517)
T ss_pred EEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 9999999987 489999999999999999999999999999999999889999999999999999999888889999999
Q ss_pred HHHHHhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHh
Q 010272 395 EAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLL 474 (514)
Q Consensus 395 ~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL 474 (514)
++|++||+.||++|++|||+|+.+++.+|+..|.+++ .++|+|+.+|+++||++.|||||+.||+++|++|+|+|++||
T Consensus 430 ~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~-~~~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL 508 (517)
T TIGR02342 430 RAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGE-KYAGISVRKGGITDMLEEEVLQPLLVTTSAVTLASETVRMIL 508 (517)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CccceecCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998775 789999999999999999999999999999999999999999
Q ss_pred chhhhhcC
Q 010272 475 RIDDIVSG 482 (514)
Q Consensus 475 ~id~ii~~ 482 (514)
|||++|..
T Consensus 509 ~iD~ii~~ 516 (517)
T TIGR02342 509 KIDDIVFT 516 (517)
T ss_pred cccceeec
Confidence 99999864
No 9
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9.6e-97 Score=789.15 Aligned_cols=481 Identities=32% Similarity=0.497 Sum_probs=455.2
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++||||||+++|+++||+++.+++++|+||..|++|
T Consensus 37 ~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g 116 (536)
T TIGR02340 37 LDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDGTTSVVIIAAELLKRADELIKRKVHPTSIISG 116 (536)
T ss_pred CceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh-ccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEE
Q 010272 81 YNKALEDAVAVLDK-IAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEK 159 (514)
Q Consensus 81 ~~~a~~~~l~~L~~-~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~ 159 (514)
|+.|++.+++.|++ +++|++..+.+.|.++++|+++||+.+.+++.|++++++|+..++....+|...+|++ +|++++
T Consensus 117 ~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~-~I~i~k 195 (536)
T TIGR02340 117 YRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIK-AVNILK 195 (536)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchH-HeEEEE
Confidence 99999999999987 4888876568889999999999999999999999999999999964222454457775 599999
Q ss_pred ecCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHH
Q 010272 160 VPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQI 239 (514)
Q Consensus 160 i~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i 239 (514)
+.|++.++|++++|++|++++.++ +|+++++||||++++++|++.+++.+.++.+++.+++..+.+.|++++++.++.|
T Consensus 196 ~~G~s~~~s~~i~Gi~i~~~~~~~-~m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I 274 (536)
T TIGR02340 196 AHGGSARESYLVKGYALNCTRASQ-QMPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKI 274 (536)
T ss_pred ecCCCccccEEEEEEEEecccCCC-CCcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCC------CCCccCCccceEEEEEEC
Q 010272 240 LKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDEL------QESDVGTGAGLFEVKKIG 313 (514)
Q Consensus 240 ~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l------~~~~lG~~~~~v~~~~ig 313 (514)
.+.|++||+++++|++.+++||.++||++++++++++|+|||++|||++++++.++ ++.++|+ |+.++++++|
T Consensus 275 ~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~-~~~v~~~~ig 353 (536)
T TIGR02340 275 LKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGF-ADEVVEERIA 353 (536)
T ss_pred HHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecchhhcCcccccccccccc-CceEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999988655 3455999 9999999999
Q ss_pred CeEEEEEEcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHH
Q 010272 314 DEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWP 393 (514)
Q Consensus 314 ~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~ 393 (514)
+++|++|++|+.+++|||+|||+|+.+++|++|+++||++++++++++|++|||||++|++++.+|+++++..+++++++
T Consensus 354 ~~~~~~i~~~~~~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~ 433 (536)
T TIGR02340 354 DDECILIKGTKGRKSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLA 433 (536)
T ss_pred CeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHH
Confidence 99999999999889999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred HHHHHHhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCC-------CceEEEeCCCCccccccccccccchHHHHHHHHHH
Q 010272 394 YEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGE-------NAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTA 466 (514)
Q Consensus 394 ~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~-------~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A 466 (514)
+++|++||+.||++|++|||+|+.+++.+|+..|.+++ +.++|+|+.+|++.||++.|||||+.+|+++|+.|
T Consensus 434 ~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A 513 (536)
T TIGR02340 434 IAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFA 513 (536)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCCccccchhccceecHHHHHHHHHHH
Confidence 99999999999999999999999999999999887652 35799999999999999999999999999999999
Q ss_pred HHHHHHHhchhhhhcCCc
Q 010272 467 IEAACMLLRIDDIVSGIK 484 (514)
Q Consensus 467 ~e~a~~iL~id~ii~~~~ 484 (514)
+|+|++|||||++|...|
T Consensus 514 ~e~a~~iL~ID~ii~~~~ 531 (536)
T TIGR02340 514 TEAAITILRIDDLIKLNP 531 (536)
T ss_pred HHHHHHHHhhhhhhhcCC
Confidence 999999999999998765
No 10
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=7.8e-97 Score=788.57 Aligned_cols=472 Identities=33% Similarity=0.518 Sum_probs=450.8
Q ss_pred CceeeecC-----CCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChh
Q 010272 1 MLKMLLDA-----SGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPT 75 (514)
Q Consensus 1 ~~Kmi~~~-----~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~ 75 (514)
|||||+++ .|+++|||||+||+++|+++||+++|++++|++|++++||||||+|+|+++||+++.+|+++|+||.
T Consensus 47 ~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~ 126 (533)
T PTZ00212 47 MDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQ 126 (533)
T ss_pred cceEeecCCCcccCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 79999999 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhccccCCCCc---HHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcc
Q 010272 76 VICRAYNKALEDAVAVLDKIAMPIDTND---RATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIK 152 (514)
Q Consensus 76 ~I~~g~~~a~~~~l~~L~~~s~~v~~~~---~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~ 152 (514)
.|++||+.|++.++++|++++++++..+ .++|.++++|+++||+.+.+.+.|++++++|+..+.. .+|++
T Consensus 127 ~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~-------~~~~~ 199 (533)
T PTZ00212 127 TIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKG-------SGNLD 199 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhc-------cCCcc
Confidence 9999999999999999999999986533 6789999999999999999999999999999998853 13443
Q ss_pred cceeEEEecCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccc-cceEEecCHHHHHHHHHHHHHH
Q 010272 153 KYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGEN-QTNAELVKEEDWEVLLKMEEEY 231 (514)
Q Consensus 153 ~~I~i~~i~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~-~~~~~i~~~~~l~~~~~~E~~~ 231 (514)
+|++++++|++++||++++|+++++++.+ .|+++++||||++++++|++++++. +.++.+++.+++..+.+.|+++
T Consensus 200 -~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~--~~~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~ 276 (533)
T PTZ00212 200 -YIQIIKKPGGTLRDSYLEDGFILEKKIGV--GQPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEK 276 (533)
T ss_pred -ceEEEEecCcCccccEEEEeEEEecccCC--CCCccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999876 5899999999999999999999987 7889999999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEE
Q 010272 232 IENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKK 311 (514)
Q Consensus 232 ~~~~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ 311 (514)
++++++.|++.|+++++++++|++.+++||.++||++++++++++++||+++|||+++++++++++.++|+ |+.|++..
T Consensus 277 i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~~l~rIa~~tGa~iis~l~~~~~~~LG~-~~~v~~~~ 355 (533)
T PTZ00212 277 MKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGH-CDLIEEIM 355 (533)
T ss_pred HHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEeecCCCCCHHHccC-CceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ECCeEEEEEEcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcch
Q 010272 312 IGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK 391 (514)
Q Consensus 312 ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~ 391 (514)
+|+++|++|++|..++.|||+|||+|+.+++|.||+++||++++|+++++|++|||||++|++++.+|+++++..+++++
T Consensus 356 ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~ 435 (533)
T PTZ00212 356 IGEDKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKS 435 (533)
T ss_pred ECCeEEEEEEccCCCCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred HHHHHHHHhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHH
Q 010272 392 WPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAAC 471 (514)
Q Consensus 392 ~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~ 471 (514)
+++++|++||+.||++|++|||+|+.+++.+|+..|.+++ .++|+|+.+|+++||++.|||||+.||+++|+.|+|+|+
T Consensus 436 ~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~-~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~ 514 (533)
T PTZ00212 436 LAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGN-KTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAE 514 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-CccceeccCCcccchhhccceecHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998775 789999999999999999999999999999999999999
Q ss_pred HHhchhhhhcCCc
Q 010272 472 MLLRIDDIVSGIK 484 (514)
Q Consensus 472 ~iL~id~ii~~~~ 484 (514)
+|||||++|...|
T Consensus 515 ~iL~id~ii~~~~ 527 (533)
T PTZ00212 515 MILRVDDIIRCAP 527 (533)
T ss_pred HHHhhhHhhhcCC
Confidence 9999999998753
No 11
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.7e-97 Score=788.92 Aligned_cols=474 Identities=35% Similarity=0.629 Sum_probs=452.7
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|||||+++.|+++|||||+||+++|+++||+++|+++++++|++++||||||+|+|+++||+++.+++++|+||..|++|
T Consensus 41 ~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g 120 (522)
T cd03340 41 MDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRG 120 (522)
T ss_pred CceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHhHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCC----cHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCccccee
Q 010272 81 YNKALEDAVAVLDKIAMPIDTN----DRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIK 156 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~~v~~~----~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~ 156 (514)
|+.|++.+++.|++++++++.. +++.|.++++|+++||+.+++.++|++++++|+..+++ ++|.+ +|+
T Consensus 121 ~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~-------~~~~~-~I~ 192 (522)
T cd03340 121 YRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDD-------DLDLD-MIG 192 (522)
T ss_pred HHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcc-------cCChh-Hhe
Confidence 9999999999999999988653 36779999999999999999999999999999999964 13332 599
Q ss_pred EEEecCCCCCCceeEeeEEEecccCCCC--CCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHH
Q 010272 157 VEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIEN 234 (514)
Q Consensus 157 i~~i~G~~~~ds~li~Giv~~~~~~~~~--~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~ 234 (514)
|+++.|+++.||++++|++|++++.++. .|++.++||+|++++++|++.+++.+..+.+.+++++..+.+.|++++++
T Consensus 193 i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~ 272 (522)
T cd03340 193 IKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYD 272 (522)
T ss_pred EeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998762 46899999999999999999999988999999999999999999999999
Q ss_pred HHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECC
Q 010272 235 LCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD 314 (514)
Q Consensus 235 ~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~ 314 (514)
+++.+.+.|+++|+++++|++.+++||.++||++++++++++|+|||++|||+++++++++++..+|+ |+.|+++++|+
T Consensus 273 ~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~tGa~ii~~l~~l~~~~LG~-~~~v~~~~ig~ 351 (522)
T cd03340 273 KLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGT-CGLFEERQVGG 351 (522)
T ss_pred HHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEeeccccCCcccccc-ceEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred eEEEEEEcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHH
Q 010272 315 EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPY 394 (514)
Q Consensus 315 ~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~ 394 (514)
++|++|++|+.++.|||+|||+++..++|.+|+++||++++++++++|++|||||++|++++.+|+++++..++++++++
T Consensus 352 ~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~ 431 (522)
T cd03340 352 ERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVI 431 (522)
T ss_pred EEEEEEECCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred HHHHHhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHh
Q 010272 395 EAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLL 474 (514)
Q Consensus 395 ~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL 474 (514)
++|++||+.||++|++|||+|+.+++.+|+..|..++..++|+|+.+|+++||++.|||||+.||+++++.|+|+|++||
T Consensus 432 ~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL 511 (522)
T cd03340 432 NAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAACLIL 511 (522)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999987642589999999999999999999999999999999999999999
Q ss_pred chhhhhcCC
Q 010272 475 RIDDIVSGI 483 (514)
Q Consensus 475 ~id~ii~~~ 483 (514)
|||++|+..
T Consensus 512 ~id~ii~~~ 520 (522)
T cd03340 512 SVDETIKNP 520 (522)
T ss_pred hhhhheeCC
Confidence 999999763
No 12
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.2e-97 Score=788.96 Aligned_cols=476 Identities=36% Similarity=0.579 Sum_probs=453.3
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|||||+++.|+++|||||+||+++|+++||+++|+++++++|++++||||||+++|+++||+++.+|+++|+||..|++|
T Consensus 52 ~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g 131 (532)
T TIGR02343 52 MDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEG 131 (532)
T ss_pred CeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCC--CCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEE
Q 010272 81 YNKALEDAVAVLDKIAMPID--TNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVE 158 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~~v~--~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~ 158 (514)
|+.|++.++++|++++++++ ..+++.|.++++|++++|+.+.+.+.|++++++|+..+... ....+|++ +|+|+
T Consensus 132 ~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~---~~~~~d~~-~I~i~ 207 (532)
T TIGR02343 132 FEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADM---ERRDVDFD-LIKVE 207 (532)
T ss_pred HHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhc---CCCcCCHH-HeeEE
Confidence 99999999999999999874 34578899999999999998888999999999999988531 11356765 69999
Q ss_pred EecCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHH
Q 010272 159 KVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQ 238 (514)
Q Consensus 159 ~i~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~ 238 (514)
+++|++++||++++|++|++++.++ .|++.++||||++++++|++++.+.+..+.+++.+++..+.+.|++++++++++
T Consensus 208 ki~Ggs~~ds~~v~Gi~i~~~~~~~-~m~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~ 286 (532)
T TIGR02343 208 GKVGGSLEDTKLIKGIIIDKDFSHP-QMPKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDD 286 (532)
T ss_pred EecCCCcccceeEeeEEEecCcCCC-CCCeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 899999999999999999999998889999999999999999999999999999
Q ss_pred HHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECC--eE
Q 010272 239 ILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD--EF 316 (514)
Q Consensus 239 i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~--~~ 316 (514)
|++.|++||+++++|++.+++||.++||++++++++++|+|||++|||+++++++++++.++|+ |+.++++.+|+ ++
T Consensus 287 i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~Ia~~tGa~~i~~l~~~~~~~LG~-a~~v~~~~ig~~~~~ 365 (532)
T TIGR02343 287 IKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELELIAIATGGRIVPRFEELSEDKLGK-AGLVREISFGTTKDR 365 (532)
T ss_pred HHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHHHHHHHHhCCEEecccccCCHhHCcc-cceEEEEEecCCcce
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999987 48
Q ss_pred EEEEEcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHH
Q 010272 317 FAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEA 396 (514)
Q Consensus 317 ~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~ 396 (514)
|++|++|++++.|||+|||+|+.+++|.+|+++||+++++++++++++|||||++|++|+++|++++...++.+++++++
T Consensus 366 ~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~ 445 (532)
T TIGR02343 366 MLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRA 445 (532)
T ss_pred EEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 99999999899999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred HHHhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhch
Q 010272 397 AAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRI 476 (514)
Q Consensus 397 ~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 476 (514)
|++||+.||++|++|||+|+.+++.+|+..|..+.+.++|+|+.+|+++||++.|||||+.||+++|+.|+|+|++||||
T Consensus 446 fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~i 525 (532)
T TIGR02343 446 FADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKI 525 (532)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999887553478999999999999999999999999999999999999999999
Q ss_pred hhhhcC
Q 010272 477 DDIVSG 482 (514)
Q Consensus 477 d~ii~~ 482 (514)
|++|.+
T Consensus 526 d~ii~~ 531 (532)
T TIGR02343 526 DDVISP 531 (532)
T ss_pred hhhccC
Confidence 999853
No 13
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.2e-96 Score=784.90 Aligned_cols=475 Identities=35% Similarity=0.572 Sum_probs=454.8
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|||||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||||+++|+++|++++.+++++|+||..|++|
T Consensus 33 ~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g 112 (515)
T cd03338 33 MDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISES 112 (515)
T ss_pred CCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCC-cccCcccceeEEE
Q 010272 81 YNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGL-REVDIKKYIKVEK 159 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~-~~~d~~~~I~i~~ 159 (514)
|++|.+.+++.|++++++++..+.+.|.++++|+++||+.+.+++++++++++|+.+++.+ +. ..+|++ +|.|.+
T Consensus 113 ~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~---~~~~~~d~~-~i~i~~ 188 (515)
T cd03338 113 FQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDP---ATATNVDLK-DIRIVK 188 (515)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcc---cccCcCCHH-HeEEEE
Confidence 9999999999999999998766788999999999999999999999999999999999863 22 467775 599999
Q ss_pred ecCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHH
Q 010272 160 VPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQI 239 (514)
Q Consensus 160 i~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i 239 (514)
+.|+++++|++++|++|++++.++..||+.++||++++++|+|++.+.+.+..+.+++.+++..++.+|+++++.++++|
T Consensus 189 ~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i 268 (515)
T cd03338 189 KLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKI 268 (515)
T ss_pred ecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999733599999999999999999999988888889999999999999999999999999
Q ss_pred HHcCCcEEEeCCCC-----CHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECC
Q 010272 240 LKFKPDLVITEKGL-----SDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD 314 (514)
Q Consensus 240 ~~~~~~lVi~~~~i-----~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~ 314 (514)
++.|++||+++++| ++.+++||.++||++++++++++|+|||++|||+++++++++++.++|+ |+.|+++++|+
T Consensus 269 ~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~tGa~ii~sl~~l~~~~LG~-~~~v~~~~~g~ 347 (515)
T cd03338 269 KKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGS-ADLVEEVSLGD 347 (515)
T ss_pred HhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHHHCCEEecccccCCHhhCCC-CceEEEEEECC
Confidence 99999999999997 8999999999999999999999999999999999999999999999999 99999999999
Q ss_pred eEEEEEEcCCC-CCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHH
Q 010272 315 EFFAFIVDCKD-PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWP 393 (514)
Q Consensus 315 ~~~~~l~~~~~-~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~ 393 (514)
++|.+|++|++ ++.|||+|||+|+.+++|.+|+++||++++++++++|++|||||++|++|+.+|++++...+++++++
T Consensus 348 ~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~ 427 (515)
T cd03338 348 GKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQYC 427 (515)
T ss_pred eEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHHHH
Confidence 99999999987 69999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred HHHHHHhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHH
Q 010272 394 YEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACML 473 (514)
Q Consensus 394 ~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~i 473 (514)
+++|++||+.||++|++|||+|+.+++.+|+..|.+++ .++|+|+.+|++.||++.|||||+.+|++++++|+|+|++|
T Consensus 428 ~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~-~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~i 506 (515)
T cd03338 428 VRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGE-KNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMI 506 (515)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC-CccceeccCCCccchhhcCceecHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998765 78999999999999999999999999999999999999999
Q ss_pred hchhhhhc
Q 010272 474 LRIDDIVS 481 (514)
Q Consensus 474 L~id~ii~ 481 (514)
||||++|+
T Consensus 507 L~ID~ii~ 514 (515)
T cd03338 507 LKIDDIVL 514 (515)
T ss_pred hccchhhc
Confidence 99999986
No 14
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-98 Score=714.53 Aligned_cols=480 Identities=35% Similarity=0.622 Sum_probs=460.7
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|||+|+++.|+++|||||+||||-|++-||+|+.+++++++||.++||||||+|+|++++|+++-.+++.|+||..|+++
T Consensus 45 mDkLivd~~g~~tIsNDGATIlKlldivhPaaktlVdia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~ 124 (543)
T KOG0361|consen 45 MDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLVDIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRA 124 (543)
T ss_pred cceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHHHHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCc----HHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCccccee
Q 010272 81 YNKALEDAVAVLDKIAMPIDTND----RATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIK 156 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~~v~~~~----~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~ 156 (514)
|++|...|++.++++++.++..+ ++.|.+.+.|+++||+.+++..+|+++++||+..+.. ..+. ++|-
T Consensus 125 ~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~-------~l~~-~mIG 196 (543)
T KOG0361|consen 125 YRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDN-------DLDL-NMIG 196 (543)
T ss_pred HHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcc-------ccch-hhcc
Confidence 99999999999999999887432 5678999999999999999999999999999998852 1222 3699
Q ss_pred EEEecCCCCCCceeEeeEEEecccCCCC--CCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHH
Q 010272 157 VEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIEN 234 (514)
Q Consensus 157 i~~i~G~~~~ds~li~Giv~~~~~~~~~--~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~ 234 (514)
|+|++||.++||.+++|+-|.+.|++.+ +.|+++.||||+++|..|+.+..+.++++.+.+.++++..+..||.++.+
T Consensus 197 IKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~ 276 (543)
T KOG0361|consen 197 IKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYD 276 (543)
T ss_pred eeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999998863 77999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECC
Q 010272 235 LCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD 314 (514)
Q Consensus 235 ~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~ 314 (514)
.+++|...|+|||++.-.|.|.|.+||.+++|.+.+|++.++|.|+..++|++|.++..++.+..+|. |..|+++++|.
T Consensus 277 KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~Rv~~acGGsi~tt~~~i~~~~LG~-C~~FeE~QvG~ 355 (543)
T KOG0361|consen 277 KLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLNRVMQACGGSIQTTVSDIKEEVLGT-CALFEERQVGG 355 (543)
T ss_pred HHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHHHHHHhcCcchhhhhhhcchhhcch-hhhHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred eEEEEEEcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHH
Q 010272 315 EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPY 394 (514)
Q Consensus 315 ~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~ 394 (514)
+||-+|+||+..+.||++|||+.++.++|.+|++|||++++|.++++..+|+|||++||++|++|++|+.+..+++|+.+
T Consensus 356 eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i 435 (543)
T KOG0361|consen 356 ERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFI 435 (543)
T ss_pred hhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHh
Q 010272 395 EAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLL 474 (514)
Q Consensus 395 ~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL 474 (514)
.+|++|||.||++||+|+|+|..+++++||..|++|. .|+|+|.++..+.|+++.+||||..||++++..|+|+|++||
T Consensus 436 ~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~-~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIl 514 (543)
T KOG0361|consen 436 NAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGE-KWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLIL 514 (543)
T ss_pred HHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCC-ceeeeeecccchhhHHHhhccChHHHHHHHHHHHHHhhhheE
Confidence 9999999999999999999999999999999999996 999999999999999999999999999999999999999999
Q ss_pred chhhhhcCCccCCCCC
Q 010272 475 RIDDIVSGIKKKQAPG 490 (514)
Q Consensus 475 ~id~ii~~~~~~~~~~ 490 (514)
.+|+.|+.+++.++|+
T Consensus 515 svDeTikn~~S~~~~p 530 (543)
T KOG0361|consen 515 SVDETIKNPKSQSAPP 530 (543)
T ss_pred ehhhhhcCCcccCCCC
Confidence 9999998877665543
No 15
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.9e-95 Score=774.82 Aligned_cols=473 Identities=31% Similarity=0.493 Sum_probs=450.4
Q ss_pred CceeeecCC--CCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHH
Q 010272 1 MLKMLLDAS--GGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVIC 78 (514)
Q Consensus 1 ~~Kmi~~~~--g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~ 78 (514)
|||||+++. |+++|||||+|||++|+++||+++|++++|++|++++||||||+|+|+++||+++.+++++|+||..|+
T Consensus 39 ~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii 118 (519)
T TIGR02341 39 MDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTII 118 (519)
T ss_pred CceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHhHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 799999995 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCC---cHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccce
Q 010272 79 RAYNKALEDAVAVLDKIAMPIDTN---DRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYI 155 (514)
Q Consensus 79 ~g~~~a~~~~l~~L~~~s~~v~~~---~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I 155 (514)
+||+.|++.+++.|++++++++.. +.++|.++++|++++|+.+.+.+.|++++++|+..+.. + .|.+ +|
T Consensus 119 ~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~----~---~~~~-~i 190 (519)
T TIGR02341 119 SGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKG----S---GNLD-AI 190 (519)
T ss_pred HHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhcc----C---CChh-he
Confidence 999999999999999999998532 36789999999999999999999999999999999842 1 2333 49
Q ss_pred eEEEecCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccc-cceEEecCHHHHHHHHHHHHHHHHH
Q 010272 156 KVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGEN-QTNAELVKEEDWEVLLKMEEEYIEN 234 (514)
Q Consensus 156 ~i~~i~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~-~~~~~i~~~~~l~~~~~~E~~~~~~ 234 (514)
++.+++|+++++|++++|+++++.+.+ .|++.++||+|++++++|++.+++. ++++.+++.+++..+...|++++++
T Consensus 191 ~i~k~~G~s~~~s~l~~G~v~~~~~~~--~~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~ 268 (519)
T TIGR02341 191 QIIKKLGGSLNDSYLDEGFLLEKKIGV--NQPKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKE 268 (519)
T ss_pred EEEEccCCCcccceEEeeEEEeccCCC--CCceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876 5799999999999999999998886 7889999999999999999999999
Q ss_pred HHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECC
Q 010272 235 LCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD 314 (514)
Q Consensus 235 ~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~ 314 (514)
+++.|++.|++++++++.|++.+++||.++||++++++++.+|+||+++|||+++++++++++.++|+ |+.+++..+|+
T Consensus 269 ~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~tGa~ii~~~~~~~~~~lG~-~~~v~~~~ig~ 347 (519)
T TIGR02341 269 KVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLALVTGGEIVSTFDHPELVKLGS-CDLIEEIMIGE 347 (519)
T ss_pred HHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecccccCCcccccc-CceEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred eEEEEEEcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHH
Q 010272 315 EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPY 394 (514)
Q Consensus 315 ~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~ 394 (514)
++|.+|++|+.++.|||+|||+|+.+++|.+|+++||+++++++++++++||||||+|++|+.+|+++++..++++++++
T Consensus 348 ~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i 427 (519)
T TIGR02341 348 DKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAV 427 (519)
T ss_pred EEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999899999999999999999998888889999999
Q ss_pred HHHHHhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHh
Q 010272 395 EAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLL 474 (514)
Q Consensus 395 ~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL 474 (514)
++|++||+.||++|++|||+|+.+++.+|+..|..+. .++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++||
T Consensus 428 ~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~-~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL 506 (519)
T TIGR02341 428 EAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGN-HTMGLDMEEGEIADMRKLGIIESYKVKRAVVSSAAEAAEVIL 506 (519)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-CccceecCCCcccchhhccceEcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998775 689999999999999999999999999999999999999999
Q ss_pred chhhhhcCCcc
Q 010272 475 RIDDIVSGIKK 485 (514)
Q Consensus 475 ~id~ii~~~~~ 485 (514)
|||++|+..|+
T Consensus 507 ~id~ii~~~~~ 517 (519)
T TIGR02341 507 RVDNIIKAAPR 517 (519)
T ss_pred hHHHHHhcCCC
Confidence 99999998774
No 16
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9e-96 Score=779.29 Aligned_cols=472 Identities=36% Similarity=0.646 Sum_probs=450.9
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|||||+++.| ++|||||+||+++|+++||+++|+++++++|++++||||||+|+|+++||+++.+++++|+||..|++|
T Consensus 43 ~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g 121 (522)
T TIGR02345 43 MDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRC 121 (522)
T ss_pred CceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHH
Confidence 7999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCC---CcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeE
Q 010272 81 YNKALEDAVAVLDKIAMPIDT---NDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKV 157 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~~v~~---~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i 157 (514)
|+.|++.+++.|+++++|++. .+.+.|.++++|+++||+.++++++|++++++|+..++++ .+|++ +|+|
T Consensus 122 ~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~------~~~~~-~I~i 194 (522)
T TIGR02345 122 YREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDID------DLDLK-LIGV 194 (522)
T ss_pred HHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhc------cCChh-HheE
Confidence 999999999999999999862 2457899999999999999999999999999999999741 35554 5999
Q ss_pred EEecCCCCCCceeEeeEEEecccCCCC--CCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHH
Q 010272 158 EKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENL 235 (514)
Q Consensus 158 ~~i~G~~~~ds~li~Giv~~~~~~~~~--~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~ 235 (514)
.++.|++++||++++|++|++++.++. .|++.++||+|++++++|++.+.+.+..+.+.+.+++..+.+.|+++++++
T Consensus 195 ~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~ 274 (522)
T TIGR02345 195 KKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRK 274 (522)
T ss_pred EeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998762 468999999999999999999888888999999999999999999999999
Q ss_pred HHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCe
Q 010272 236 CMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDE 315 (514)
Q Consensus 236 v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~~ 315 (514)
++++++.|+++|++++++++.+++||.++||+++++++++++++++++|||+++++++++++..+|+ |+.+++++++++
T Consensus 275 i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~tga~ii~~~~~l~~~~LG~-~~~ie~~~~~~~ 353 (522)
T TIGR02345 275 LEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRVVKACGGSIQSTTSDLEADVLGT-CALFEERQIGSE 353 (522)
T ss_pred HHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCeEEcchhhCChhhccC-CceEEEEEECCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred EEEEEEcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHH
Q 010272 316 FFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYE 395 (514)
Q Consensus 316 ~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~ 395 (514)
+|.+|++|+++++|||+|||+|+.+++|.+|+++||+++++++++++++|||||++|++++.+|++++...+++++++++
T Consensus 354 r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~ 433 (522)
T TIGR02345 354 RYNYFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQLIIE 433 (522)
T ss_pred EEEEEEcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 99999999889999999999999999999999999999999999998899999999999999999988888899999999
Q ss_pred HHHHhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhc
Q 010272 396 AAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLR 475 (514)
Q Consensus 396 ~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ 475 (514)
+|++||+.||++|++|||+|+.+++.+|+..|..++ .++|+|+.+|++.||++.|||||+.||+++|++|+|+|++|||
T Consensus 434 ~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~-~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ 512 (522)
T TIGR02345 434 AFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGG-KWYGVDINTEDIGDNFENFVWEPLLVKKNALKAAFEAACTILS 512 (522)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-CccceeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999887664 7899999999999999999999999999999999999999999
Q ss_pred hhhhhcC
Q 010272 476 IDDIVSG 482 (514)
Q Consensus 476 id~ii~~ 482 (514)
||++|+.
T Consensus 513 id~ii~~ 519 (522)
T TIGR02345 513 IDETIMN 519 (522)
T ss_pred HHHHHhC
Confidence 9999976
No 17
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.6e-95 Score=775.66 Aligned_cols=474 Identities=32% Similarity=0.528 Sum_probs=449.8
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|||||++++|+++|||||+||+++|+++||+++|+++++++|++++||||||+|+|+++||+++.+++++|+||..|++|
T Consensus 43 ~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g 122 (531)
T TIGR02346 43 MNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKG 122 (531)
T ss_pred CCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccc-cC-CCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEE
Q 010272 81 YNKALEDAVAVLDKIAM-PI-DTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVE 158 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~-~v-~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~ 158 (514)
|+.|++.+++.|+++++ ++ +..+.+.|.++++|+++||+.++ +++|++++++|+..++++ +.+.+|++ .|+|+
T Consensus 123 ~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~-~~~ls~l~~~Ai~~v~~~---~~~~~~~~-~I~i~ 197 (531)
T TIGR02346 123 YEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGN-EDFLAQLVAKACSTVMPK---NPENFNVD-NIRVS 197 (531)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCch-HHHHHHHHHHHHHHHhhc---CCCcCChh-HeeEE
Confidence 99999999999999886 66 33467889999999999999877 999999999999999852 32357775 59999
Q ss_pred EecCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHH
Q 010272 159 KVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQ 238 (514)
Q Consensus 159 ~i~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~ 238 (514)
++.|++.++|++++|++|++++. .|++.++||||+++++++++.+++.+..+.+++++++..+...|+++++++++.
T Consensus 198 ki~G~s~~ds~li~Gi~~~~~~~---~~~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~ 274 (531)
T TIGR02346 198 KIMGGSISNSEVLKGMVFNREAE---GSVKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKA 274 (531)
T ss_pred EecCCChhhceeEeeeEEeccCC---CCceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999954 468899999999999999999999899999999999999999999999999999
Q ss_pred HHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEE
Q 010272 239 ILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFA 318 (514)
Q Consensus 239 i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~ 318 (514)
+++.|++||+++++|++.+++||.++||+++++++..+|+|||.+|||+++++++++++.++|+ |+.++++++|+++|.
T Consensus 275 i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~tGa~ii~~l~~~~~~~LG~-a~~v~~~~ig~~~~~ 353 (531)
T TIGR02346 275 IADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCKTVGATPLARLGAPQPEEIGY-VDSVYVSEIGGQKVT 353 (531)
T ss_pred HHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHHHCCEEecccccCCHhHccc-cceEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred EEEcCC-CCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHH
Q 010272 319 FIVDCK-DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAA 397 (514)
Q Consensus 319 ~l~~~~-~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~ 397 (514)
+|++|. .++.+||+|||+|+.+++|++|+++||++++++++++|++|||||++|++++.+|+++++..++.+++++++|
T Consensus 354 ~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~ 433 (531)
T TIGR02346 354 VFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKF 433 (531)
T ss_pred EEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 999887 5899999999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred HHhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCc--cccccccccccchHHHHHHHHHHHHHHHHHhc
Q 010272 398 AIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGA--ISDMKERKIWDAYNVKAQTFKTAIEAACMLLR 475 (514)
Q Consensus 398 a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~--i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ 475 (514)
++||+.||++|++|||+|+.+++.+|+..|..++ .++|+|+.+|+ ++||++.|||||+.||+++|+.|+|+|++|||
T Consensus 434 a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~-~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ 512 (531)
T TIGR02346 434 AEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGN-TSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLR 512 (531)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-CccceeeeCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999997665 68999999999 59999999999999999999999999999999
Q ss_pred hhhhhcCCc
Q 010272 476 IDDIVSGIK 484 (514)
Q Consensus 476 id~ii~~~~ 484 (514)
||++|...|
T Consensus 513 id~ii~~~~ 521 (531)
T TIGR02346 513 VDQIIMAKP 521 (531)
T ss_pred hhHhhccCC
Confidence 999998754
No 18
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.3e-94 Score=758.99 Aligned_cols=445 Identities=31% Similarity=0.573 Sum_probs=424.4
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|||||+++.|+++|||||+|||++|+++||+++|++++|++|++++||||||+++|+++|++++.++++.|+||..|++|
T Consensus 37 ~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g 116 (484)
T cd03342 37 TLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEG 116 (484)
T ss_pred CceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhHhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCC-CcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEE
Q 010272 81 YNKALEDAVAVLDKIAMPIDT-NDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEK 159 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~~v~~-~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~ 159 (514)
|++|.+.++++|++++.+++. .+.+.+.++++|++++|+.+.+.+.|++++++|+..++++ + ..+|++ +|+|++
T Consensus 117 ~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~---~-~~~~~~-~I~i~k 191 (484)
T cd03342 117 FELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKP---D-EPIDLH-MVEIMQ 191 (484)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhc---C-CccChh-HeEEEE
Confidence 999999999999999999864 4688999999999999999999999999999999999852 3 257775 599999
Q ss_pred ecCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHH
Q 010272 160 VPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQI 239 (514)
Q Consensus 160 i~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i 239 (514)
+.|++.++|++++|++|++++.++ .|+++++||||++++++|++.+++.+..+.+.
T Consensus 192 i~ggs~~ds~~i~G~~~~~~~~~~-~m~~~~~n~~Ill~~~~le~~~~~~~~~~~~~----------------------- 247 (484)
T cd03342 192 MQHKSDSDTKLIRGLVLDHGARHP-DMPKRVENAYILTCNVSLEYEKTEVNSGFFYS----------------------- 247 (484)
T ss_pred ecCCChhhceEEeeEEEecCCCCC-CCCccccCceEEEEeCCCCCCccccCcEEEEE-----------------------
Confidence 999999999999999999999998 89999999999999999999887766655432
Q ss_pred HHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEE
Q 010272 240 LKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAF 319 (514)
Q Consensus 240 ~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~ 319 (514)
||+++++|++.+++||.++||++++++++++|+|||++|||+++++++++++.++|+ |+.++++.+|+++|++
T Consensus 248 ------lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa~ii~~l~~~~~~~LG~-~~~v~~~~ig~~~~~~ 320 (484)
T cd03342 248 ------VVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAMNSVDDLSPECLGY-AGLVYERTLGEEKYTF 320 (484)
T ss_pred ------EEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCEEecccccCChhhCcc-cceEEEEEECCeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred EEcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 010272 320 IVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAI 399 (514)
Q Consensus 320 l~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~ 399 (514)
|++|+.++.|||+|||+|+.+++|.+|+++||++++++++++|++|||||++|++|+.+|+++++..++++++++++|++
T Consensus 321 i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~ 400 (484)
T cd03342 321 IEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFAD 400 (484)
T ss_pred EECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred hhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhhh
Q 010272 400 AFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDI 479 (514)
Q Consensus 400 aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~i 479 (514)
||+.||++|++|||+|+.+++.+|+..|.++. +++|+|+.+|+++||++.|||||+.+|+++|++|+|+|++|||||++
T Consensus 401 Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~-~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~i 479 (484)
T cd03342 401 ALLVIPKTLAENSGLDVQETLVKLQDEYAEGG-QVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEI 479 (484)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHccC-CceeeeCCCCcccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHh
Confidence 99999999999999999999999998888775 68999999999999999999999999999999999999999999999
Q ss_pred hcC
Q 010272 480 VSG 482 (514)
Q Consensus 480 i~~ 482 (514)
|+.
T Consensus 480 i~~ 482 (484)
T cd03342 480 IRA 482 (484)
T ss_pred hhc
Confidence 865
No 19
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.3e-94 Score=758.28 Aligned_cols=438 Identities=75% Similarity=1.160 Sum_probs=418.7
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|||||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||||+++|+++||+++.+++++|+||..|++|
T Consensus 41 ~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g 120 (480)
T cd03337 41 MLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKA 120 (480)
T ss_pred CceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhHHHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCC-cccCcccceeEEE
Q 010272 81 YNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGL-REVDIKKYIKVEK 159 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~-~~~d~~~~I~i~~ 159 (514)
|+.|++.++++|++++++++..+.+.|.++++|+++||+.++|.+.+++++++|+..++++. .+. +++|+.++|+|++
T Consensus 121 ~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~-~~~~~~id~~~~I~i~k 199 (480)
T cd03337 121 YRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEE-NGRKKEIDIKRYAKVEK 199 (480)
T ss_pred HHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhcccc-CCCCCcCChhhceEEEE
Confidence 99999999999999999998777899999999999999999999999999999999998632 122 3578777799999
Q ss_pred ecCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHH
Q 010272 160 VPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQI 239 (514)
Q Consensus 160 i~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i 239 (514)
++|++.+||++++|++|++++.++ .|+++++||||++++++|++
T Consensus 200 i~Ggs~~ds~li~Gvvi~k~~~~~-~m~~~~~n~kIlll~~~Le~----------------------------------- 243 (480)
T cd03337 200 IPGGEIEDSRVLDGVMLNKDVTHP-KMRRRIENPRIVLLDCPLEY----------------------------------- 243 (480)
T ss_pred ecCCCHHhcccccceEEeccCCCC-CCCcEecCCCEEEEecCcce-----------------------------------
Confidence 999999999999999999999998 89999999999999999875
Q ss_pred HHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEE
Q 010272 240 LKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAF 319 (514)
Q Consensus 240 ~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~ 319 (514)
||+++++|++.+++||.++||++++++++++|+|||++|||++++++++++++.+|+.|+.++++++++++|++
T Consensus 244 ------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~ 317 (480)
T cd03337 244 ------LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTF 317 (480)
T ss_pred ------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999967888888999999999
Q ss_pred EEcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHHHH
Q 010272 320 IVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAI 399 (514)
Q Consensus 320 l~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~ 399 (514)
|++|++++.|||+|||+|+.+++|.||+++||+++++++++++++|||||++|++++.+|+++++..++++++++++|++
T Consensus 318 i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~ 397 (480)
T cd03337 318 ITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVAS 397 (480)
T ss_pred EEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888999999999999
Q ss_pred hhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhhh
Q 010272 400 AFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDI 479 (514)
Q Consensus 400 aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~i 479 (514)
||+.||++|++|||+|+.+++.+|+..|.++++.++|+|+.+|+++||++.|||||+.+|+++|++|+|+|++|||||++
T Consensus 398 al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~i 477 (480)
T cd03337 398 ALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDI 477 (480)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhhe
Confidence 99999999999999999999999999998773478999999999999999999999999999999999999999999998
Q ss_pred hc
Q 010272 480 VS 481 (514)
Q Consensus 480 i~ 481 (514)
|.
T Consensus 478 i~ 479 (480)
T cd03337 478 VS 479 (480)
T ss_pred ec
Confidence 74
No 20
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9.3e-90 Score=724.51 Aligned_cols=434 Identities=33% Similarity=0.563 Sum_probs=409.4
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|||||++++|+++|||||+||+++|+++||+++|+++++++|++++||||||+++|+++||+++.+++++|+||..|++|
T Consensus 33 ~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g 112 (472)
T cd03341 33 MNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEG 112 (472)
T ss_pred CceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccc-C-CCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEE
Q 010272 81 YNKALEDAVAVLDKIAMP-I-DTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVE 158 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~~-v-~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~ 158 (514)
|+.|++.++++|++++++ + +..+.+.+.++++|+++||+.+ +++++++++++|+..++++. .| .+|++ +|+|+
T Consensus 113 ~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~-~~~~l~~l~~~a~~~~~~~~-~~--~~~~~-~i~i~ 187 (472)
T cd03341 113 YEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYG-NEDFLSPLVAEACISVLPEN-IG--NFNVD-NIRVV 187 (472)
T ss_pred HHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHHhhcc-CC--cCChh-HeEEE
Confidence 999999999999999876 4 4456788999999999999876 78999999999999998631 13 46665 59999
Q ss_pred EecCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHH
Q 010272 159 KVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQ 238 (514)
Q Consensus 159 ~i~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~ 238 (514)
+++|++.+||++++|++|++.+. .++++++||+|++++++|++
T Consensus 188 ki~Gg~~~ds~lv~Giv~~~~~~---~~~~~~~n~~Ili~~~~Le~---------------------------------- 230 (472)
T cd03341 188 KILGGSLEDSKVVRGMVFKREPE---GSVKRVKKAKVAVFSCPFDI---------------------------------- 230 (472)
T ss_pred EecCCCcccceEEeeEEEccccC---CCceeccCCcEEEEeccccC----------------------------------
Confidence 99999999999999999988654 34588999999999999885
Q ss_pred HHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEE
Q 010272 239 ILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFA 318 (514)
Q Consensus 239 i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~ 318 (514)
|++||+++++|++.+++||+++||++++++++++|+||+++|||+++++++++++.++|+ |+.|+++++|+++|+
T Consensus 231 ----g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~ig~~~~~ 305 (472)
T cd03341 231 ----GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAPTPEEIGY-CDSVYVEEIGDTKVV 305 (472)
T ss_pred ----CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCHhHCCC-ceEEEEEEECCeeEE
Confidence 899999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred EEEcCCC-CCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHH
Q 010272 319 FIVDCKD-PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAA 397 (514)
Q Consensus 319 ~l~~~~~-~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~ 397 (514)
+|++|.. +++|||+|||+|+.+++|+||+++||++++++++++|++|||||++|++++.+|++++...++++++++++|
T Consensus 306 ~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~ 385 (472)
T cd03341 306 VFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKF 385 (472)
T ss_pred EEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 9999987 899999999999999999999999999999999999999999999999999999998888888999999999
Q ss_pred HHhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCC--ccccccccccccchHHHHHHHHHHHHHHHHHhc
Q 010272 398 AIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTG--AISDMKERKIWDAYNVKAQTFKTAIEAACMLLR 475 (514)
Q Consensus 398 a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~--~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ 475 (514)
++||+.||++|++|||+|+.+++.+|+..|.+++ .++|+|+.+| +++||++.|||||+.||+++|++|+|+|++|||
T Consensus 386 a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~-~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ 464 (472)
T cd03341 386 AEAFEVVPRTLAENAGLDATEVLSELYAAHQKGN-KSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLR 464 (472)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC-CeeeeeccCCCCCccChhhccceecHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999897765 6899999999 999999999999999999999999999999999
Q ss_pred hhhhhcC
Q 010272 476 IDDIVSG 482 (514)
Q Consensus 476 id~ii~~ 482 (514)
||++|..
T Consensus 465 id~ii~~ 471 (472)
T cd03341 465 VDQIIMA 471 (472)
T ss_pred hcceeec
Confidence 9999854
No 21
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-91 Score=664.33 Aligned_cols=476 Identities=34% Similarity=0.562 Sum_probs=455.1
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|||||....|+++|||||+|||+.|++-||+++|+++++..||.++||||||+|+|+++||+.+.+|+++|+||+.|...
T Consensus 51 mDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsds 130 (534)
T KOG0358|consen 51 MDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDS 130 (534)
T ss_pred hhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEEe
Q 010272 81 YNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKV 160 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~i 160 (514)
|+.|.+..+++|.+++.|++.+|++.|.+-+.|+|+||+.++|+..++.+.++|+.++.. +....++|++ +|+|.|.
T Consensus 131 fq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~d--p~~~~nvdlk-dIkivkk 207 (534)
T KOG0358|consen 131 FQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVID--PENATNVDLK-DIKIVKK 207 (534)
T ss_pred HHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccC--cccccccchh-hhhhHHh
Confidence 999999999999999999999999999999999999999999999999999999998753 2333567876 5999999
Q ss_pred cCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHH
Q 010272 161 PGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240 (514)
Q Consensus 161 ~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i~ 240 (514)
.||.++|+++++|++|+...... .-|++++++||-++.|-|+++++.....+.++++.+|+..++.|+.|+..++++|.
T Consensus 208 lGgtvdDte~i~glvl~~~~~~~-~gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIK 286 (534)
T KOG0358|consen 208 LGGTVDDTELIKGLVLTQKASKS-AGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIK 286 (534)
T ss_pred hCCccchhhhhcceEEeeecccC-CCcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987765 47889999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEeCCCC-----CHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEE-EECC
Q 010272 241 KFKPDLVITEKGL-----SDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVK-KIGD 314 (514)
Q Consensus 241 ~~~~~lVi~~~~i-----~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~-~ig~ 314 (514)
+.|+||+++|++| +|.+++||.+.+|++++++.+++++.+++..|+.++.+++.+++..+|+ ++.+++. ..|+
T Consensus 287 k~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick~l~c~Pia~id~f~~d~Lg~-adlveE~~~~G~ 365 (534)
T KOG0358|consen 287 KAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTLGCKPIADIDHFTADKLGS-ADLVEETDSSGE 365 (534)
T ss_pred hcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcCCeecchhhhcChhhcCc-chhhhhcccCCC
Confidence 9999999999985 8999999999999999999999999999999999999999999999999 9999887 4466
Q ss_pred eEEEEEEcCCC-CCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHH
Q 010272 315 EFFAFIVDCKD-PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWP 393 (514)
Q Consensus 315 ~~~~~l~~~~~-~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~ 393 (514)
.+++.+.++.+ +..|||++||.+.-.++|.+|++|||||++|++++...++||||+.|+.++..|..++.+..+.+.++
T Consensus 366 gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~yc 445 (534)
T KOG0358|consen 366 GKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEAYC 445 (534)
T ss_pred ccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchhHH
Confidence 69999999876 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHH
Q 010272 394 YEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACML 473 (514)
Q Consensus 394 ~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~i 473 (514)
+++||+|||.||.+||+|||++|+.++.+||..|++|+ ++.|++.+.|.+.||++..|+.|+.|-.++++.|+|++.+|
T Consensus 446 ~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge-~~aGInVRkg~~tni~ee~VvQPllVs~SaitlA~Etvr~I 524 (534)
T KOG0358|consen 446 WRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGE-KNAGINVRKGGITNILEENVVQPLLVSISAITLATETVRSI 524 (534)
T ss_pred HHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCC-cccceeeecccchhhHHHhcccceeeeHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred hchhhhhcC
Q 010272 474 LRIDDIVSG 482 (514)
Q Consensus 474 L~id~ii~~ 482 (514)
|+||+|+..
T Consensus 525 LKIDDIv~a 533 (534)
T KOG0358|consen 525 LKIDDIVNA 533 (534)
T ss_pred hhhhhhccc
Confidence 999999853
No 22
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.8e-89 Score=721.05 Aligned_cols=432 Identities=48% Similarity=0.759 Sum_probs=414.3
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|+|||+++.|++++||||+||+++|+++||+++++++++++|++++||||||+++|+++|++++.+++++|+||..|++|
T Consensus 33 ~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g 112 (464)
T cd00309 33 MDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRG 112 (464)
T ss_pred CcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEEe
Q 010272 81 YNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKV 160 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~i 160 (514)
|+.|++.+++.|++++++++..+.+.|.++++|+++||+.+.|++.+++++++|+..++++. . .+|.. +|+|+++
T Consensus 113 ~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~--~--~~~~~-~I~i~k~ 187 (464)
T cd00309 113 YEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKEN--G--DVDLG-VIRVEKK 187 (464)
T ss_pred HHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccchHHHHHHHHHHHHHhcccc--C--ccccc-eEEEEec
Confidence 99999999999999999976667899999999999999999999999999999999998632 1 34443 5999999
Q ss_pred cCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHH
Q 010272 161 PGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240 (514)
Q Consensus 161 ~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i~ 240 (514)
+||++.+|++++|++|++++.++ .|++.++||||++++++|++
T Consensus 188 ~gg~~~ds~li~Gi~~~~~~~~~-~m~~~~~n~~Ili~~~~Le~------------------------------------ 230 (464)
T cd00309 188 KGGSLEDSELVVGMVFDKGYLSP-YMPKRLENAKILLLDCKLEY------------------------------------ 230 (464)
T ss_pred CCCCcccceeeeeEEEecCCCCC-CCceeecCceEEEEecCcce------------------------------------
Confidence 99999999999999999999998 89999999999999999985
Q ss_pred HcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEE
Q 010272 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFI 320 (514)
Q Consensus 241 ~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l 320 (514)
||+++++|++.+++||.++||++++++++++|+||+++||+.++++++++++..+|+ |+.+++.++|+++|++|
T Consensus 231 -----lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~~~~~~~lG~-~~~v~~~~~g~~~~~~~ 304 (464)
T cd00309 231 -----VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPEDLGT-AGLVEETKIGDEKYTFI 304 (464)
T ss_pred -----EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCcccCcc-ccEEEEEEEcCeeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred EcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHHHHh
Q 010272 321 VDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIA 400 (514)
Q Consensus 321 ~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~a 400 (514)
.+|..++.|||+|||+|+.+++|+||+++||++++|++++++++|||||++|++++++|++++...++.+++++++|++|
T Consensus 305 ~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~a 384 (464)
T cd00309 305 EGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADA 384 (464)
T ss_pred EecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 99988999999999999999999999999999999999999889999999999999999999888889999999999999
Q ss_pred hhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhhhh
Q 010272 401 FEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 480 (514)
Q Consensus 401 L~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii 480 (514)
|+.||++|++|||+|+.+++.+|+..|.++. .++|+|+.+|++.||.+.|||||+.||+++++.|+|+|++|||||++|
T Consensus 385 L~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~-~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii 463 (464)
T cd00309 385 LEVIPRTLAENAGLDPIEVVTKLRAKHAEGG-GNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDII 463 (464)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhccC-CCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 9999999999999999999999999887765 689999999999999999999999999999999999999999999997
Q ss_pred c
Q 010272 481 S 481 (514)
Q Consensus 481 ~ 481 (514)
+
T Consensus 464 ~ 464 (464)
T cd00309 464 V 464 (464)
T ss_pred C
Confidence 4
No 23
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=5.4e-88 Score=720.26 Aligned_cols=470 Identities=40% Similarity=0.678 Sum_probs=447.5
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|+|||+++.|++++||||+||+++|+++||+++++++++++|++++||||||+++|+++|++++.+++++|+||..|++|
T Consensus 14 ~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~I~~~ 93 (485)
T PF00118_consen 14 RDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKLIKKGIHPQEIIRG 93 (485)
T ss_dssp -EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred CeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhhhhccccccchhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEEe
Q 010272 81 YNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKV 160 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~i 160 (514)
|+.+++.+++.|++++++++..+ +.+.++++|++++|+.++|.+.+++++++|+..+.. ++|+. ++.+.++
T Consensus 94 ~~~~~~~~~~~l~~~s~~~~~~~-~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~-------~~~~~-~i~i~~i 164 (485)
T PF00118_consen 94 LQEALKIILEYLEKISIPINNDD-ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKS-------NFDLD-NIKIIKI 164 (485)
T ss_dssp HHHHHHHHHHHHHHHSEESTSTS-HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTT-------THHGG-GEEEEEE
T ss_pred hhhhhhhhhhhhhhhhccccccc-hhhhhhhcccccccccccchhhhhhhHHHHHHhhcc-------ccccc-chhhhhh
Confidence 99999999999999999987533 889999999999999999999999999999954432 14444 3899999
Q ss_pred cCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHH
Q 010272 161 PGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240 (514)
Q Consensus 161 ~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i~ 240 (514)
.|++.+||++++|++|++++.++ +|+++++||+|++++++|++.++ .+.++.+++.+++..+.++|+++++++++++.
T Consensus 165 ~g~~~~dS~li~Giv~~~~~~~~-~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~ 242 (485)
T PF00118_consen 165 PGGSISDSELINGIVLDKGFSSP-NMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQEKKYLKKILEKII 242 (485)
T ss_dssp ESSSSGGEEEESEEEESSSBSST-TSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccceeeecccccc-ccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhhhhhhccccceEe
Confidence 99999999999999999999998 89999999999999999999988 89999999999999999999999999999999
Q ss_pred HcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEE
Q 010272 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFI 320 (514)
Q Consensus 241 ~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l 320 (514)
+.|+++|+++++|++.++++|.++||.+++++++++|++|+++||+.++++++++++..+|+ |+.++++.+++++|++|
T Consensus 243 ~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~-~~~v~~~~i~~~~~~~~ 321 (485)
T PF00118_consen 243 NLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGF-CKSVEEREIGNKKYIFI 321 (485)
T ss_dssp TTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEE-EEEEEEEEETSSEEEEE
T ss_pred eeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhh-hhhhhhccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999988999 99999999999999999
Q ss_pred E--cCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHHH
Q 010272 321 V--DCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAA 398 (514)
Q Consensus 321 ~--~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a 398 (514)
+ +|..++.+||+|||+++.+++|++++++||+++++++++++++|||||++|++|+++|++++++.++++++++++|+
T Consensus 322 ~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a 401 (485)
T PF00118_consen 322 EGIGCLSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQLAIEAFA 401 (485)
T ss_dssp EEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHH
T ss_pred ccccccccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchhhhHHHHH
Confidence 9 58889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhh
Q 010272 399 IAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDD 478 (514)
Q Consensus 399 ~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ 478 (514)
+||+.||++|++|||+|+.+++.+|+..|.++ .++|+|+.+|++.||.+.|||||+.+|+++|+.|+|+|++|||||+
T Consensus 402 ~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~--~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~ 479 (485)
T PF00118_consen 402 DALESIPKTLAQNAGLDSSEVISKLKSFHNNG--NNYGIDLDTGEIVDMKEAGILDPLLVKISALKSAVEIASLILRIDE 479 (485)
T ss_dssp HHTTHHHHHHHHHTTSTHHHHHHHHHHHHHST--TTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEE
T ss_pred HHHHHhhhhhhhccCCCceeeehhhHhhhccc--cccCcCccCCceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988655 4899999999999999999999999999999999999999999999
Q ss_pred hhcCCc
Q 010272 479 IVSGIK 484 (514)
Q Consensus 479 ii~~~~ 484 (514)
+|...|
T Consensus 480 iI~~~~ 485 (485)
T PF00118_consen 480 IIMAKP 485 (485)
T ss_dssp EEEESS
T ss_pred HHhcCC
Confidence 997654
No 24
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-88 Score=708.49 Aligned_cols=474 Identities=37% Similarity=0.564 Sum_probs=442.0
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|||||+++.|+++|||||+||+++|+++||+|+|++++|++||+++||||||++||+++||+++.+++++|+||+.|++|
T Consensus 36 ~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G 115 (524)
T COG0459 36 RNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRG 115 (524)
T ss_pred CceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 79999999779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEEe
Q 010272 81 YNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKV 160 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~i 160 (514)
|++|.+.++++|++++++++..+.+. +++.|++++|+.+++ +++++++++|+.+++... . |++ .|.+.+.
T Consensus 116 ~~~A~~~~~e~l~~~a~~v~~~~~~~--~~~~t~v~sk~~~~~-~~i~~lv~~Av~~v~~~~----~--d~~-~i~~vk~ 185 (524)
T COG0459 116 YRLAVEKAVEELKEIAKPVSDSEEEL--KIAITSVASKSANSD-EEIGELVVEAVEKVGKEQ----S--DLD-GIIIVKE 185 (524)
T ss_pred HHHHHHHHHHHHHHhhccCCcchhhh--hhhhheeeeeeccCh-HHHHHHHHHHHHHhcccc----c--ccC-CeEEEEe
Confidence 99999999999999999988644444 889999999987766 999999999999998531 1 333 5888899
Q ss_pred cCCCCCCceeEeeEEEecccCCCCCCc-ccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHH-HHHHHHHHH
Q 010272 161 PGGQLEDSRVLKGVMFNKDVVAPGKMR-RKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEE-EYIENLCMQ 238 (514)
Q Consensus 161 ~G~~~~ds~li~Giv~~~~~~~~~~~~-~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~-~~~~~~v~~ 238 (514)
.|+..+++++++||+|++++.++..|| +.++||+|+++|++|++.+++.+.++.+.++.+|..+.+.|+ +.+..++.+
T Consensus 186 ~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~n 265 (524)
T COG0459 186 SGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVN 265 (524)
T ss_pred cCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEccccccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999665555899 899999999999999999999999999999999999999998 999999999
Q ss_pred HHHcCCc-EEEeCCCCCHHHHHHHHHcCCeEEecCChhHH-HHHHHHhCCeeccCCCCCCCCccCC-ccceEEEEEECCe
Q 010272 239 ILKFKPD-LVITEKGLSDLACHYLSKAGVSAIRRLRKTDN-NRIAKACGAVIVNRPDELQESDVGT-GAGLFEVKKIGDE 315 (514)
Q Consensus 239 i~~~~~~-lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l-~~i~~~tGa~ii~~~~~l~~~~lG~-~~~~v~~~~ig~~ 315 (514)
+.+.++| +++++++++|.+++||.+.+|++++++.++++ ++|++++||++++.++++++..+|. .|+.++..+++++
T Consensus 266 i~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~ 345 (524)
T COG0459 266 ILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDY 345 (524)
T ss_pred HHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHccCceEEeecccCceeecCccccceEEEeeccch
Confidence 9999999 99999999999999999999999999999999 8999999999999999999988883 2888999999999
Q ss_pred EEEEEEcCCC--CCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCC-cchH
Q 010272 316 FFAFIVDCKD--PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG-IEKW 392 (514)
Q Consensus 316 ~~~~l~~~~~--~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~-~~~~ 392 (514)
++.+|++|+. ++.|||+|||+|+.+++|.+|+++|||+++|+++++|++|||||++|++++.+|++++.+.++ ++|+
T Consensus 346 ~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~ 425 (524)
T COG0459 346 DMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQL 425 (524)
T ss_pred hhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHHH
Confidence 9999999985 889999999999999999999999999999999999999999999999999999987444555 8999
Q ss_pred HHHHHHHhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCcc-ccccccccccchHHHHHHHHHHHHHHH
Q 010272 393 PYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAI-SDMKERKIWDAYNVKAQTFKTAIEAAC 471 (514)
Q Consensus 393 ~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i-~d~~~~gI~dp~~vk~~~l~~A~e~a~ 471 (514)
++++|++||+.||++|++|||+|+.+++.+|++.|. .+++|+|+.+|++ .||++.|||||+.||+++|++|+|+|+
T Consensus 426 ~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~---~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~ 502 (524)
T COG0459 426 GIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA---TTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAG 502 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccc---CCccceeccCCccccchHhccCcChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999874 2569999999999 779999999999999999999999999
Q ss_pred HHhchhhhhcCCccCC
Q 010272 472 MLLRIDDIVSGIKKKQ 487 (514)
Q Consensus 472 ~iL~id~ii~~~~~~~ 487 (514)
++||+|++|...|++.
T Consensus 503 llL~~d~iI~~~~~~~ 518 (524)
T COG0459 503 LLLTIDDIIAAKPEEK 518 (524)
T ss_pred HHHHHHHhhccCCccc
Confidence 9999999999887764
No 25
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-88 Score=638.92 Aligned_cols=478 Identities=31% Similarity=0.493 Sum_probs=452.3
Q ss_pred CceeeecC--CCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHH
Q 010272 1 MLKMLLDA--SGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVIC 78 (514)
Q Consensus 1 ~~Kmi~~~--~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~ 78 (514)
||||+... .|.+.+||||+|||+++.+.+|+||++++.++.||+++||||||+++|+++||+++.+|+.+.+||..|+
T Consensus 43 MdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii 122 (527)
T KOG0363|consen 43 MDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTII 122 (527)
T ss_pred HHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheeccccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHH
Confidence 89999775 4789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCC---CcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccce
Q 010272 79 RAYNKALEDAVAVLDKIAMPIDT---NDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYI 155 (514)
Q Consensus 79 ~g~~~a~~~~l~~L~~~s~~v~~---~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I 155 (514)
.||+.|.+.+++.|.+.++.-.. .-+++|.++++|.|+||+.++..++|++|+++|+.++. |..+++ .|
T Consensus 123 ~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLk-----Gs~nL~---~I 194 (527)
T KOG0363|consen 123 SGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLK-----GSTNLE---AI 194 (527)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc-----CCCCcc---ce
Confidence 99999999999999887765321 12778999999999999999999999999999999985 444444 49
Q ss_pred eEEEecCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccc-cceEEecCHHHHHHHHHHHHHHHHH
Q 010272 156 KVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGEN-QTNAELVKEEDWEVLLKMEEEYIEN 234 (514)
Q Consensus 156 ~i~~i~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~-~~~~~i~~~~~l~~~~~~E~~~~~~ 234 (514)
+|.|..||.+.||++-+|+++++.+-. +.|+.++|+|||+-|.+++..+.+- .+.+.+.+...+..+...|++.++.
T Consensus 195 qIIK~~Gg~l~dSfLDeGFlL~K~igv--~qpkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~ 272 (527)
T KOG0363|consen 195 QIIKKLGGKLEDSFLDEGFLLDKKIGV--NQPKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKE 272 (527)
T ss_pred eeehhcCCccccccccccceeccccCC--CCcccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999998766 6799999999999999999887764 4689999999999999999999999
Q ss_pred HHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECC
Q 010272 235 LCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD 314 (514)
Q Consensus 235 ~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~ 314 (514)
.+++|..+|+|+.+...-|.++-.++|.+.||+++...+-+-++|++.+||+.|++.+++++...+|+ |+.+++..+|+
T Consensus 273 KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiERLalvtGGeI~STFd~p~~~klG~-C~~IeeimiGe 351 (527)
T KOG0363|consen 273 KVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIERLALVTGGEIVSTFDNPELVKLGE-CDLIEEIMIGE 351 (527)
T ss_pred HHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHHHHhhcccceeeeccCCcchhcccc-chhhHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred eEEEEEEcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHH
Q 010272 315 EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPY 394 (514)
Q Consensus 315 ~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~ 394 (514)
+++.+|+||+.+..|||++||+|.++++|.+|++|||||++...+++.+++.||||.||.++..+.+++...++++..++
T Consensus 352 d~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~Ai 431 (527)
T KOG0363|consen 352 DKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAI 431 (527)
T ss_pred cceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHh
Q 010272 395 EAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLL 474 (514)
Q Consensus 395 ~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL 474 (514)
++|++||..+|.+||.|+|+|+.+++.+||+.|.+|. ..+|+|..+|++.||.+.||+|++.+|.+.+.+|.|+|.|||
T Consensus 432 eAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~-~t~Gld~~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~il 510 (527)
T KOG0363|consen 432 EAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGR-TTMGLDVRNGEIGDMRELGIVESLKVKQAVVSSASEAAEMIL 510 (527)
T ss_pred HHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCC-cccccccccCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999999999999999999999999999987 899999999999999999999999999999999999999999
Q ss_pred chhhhhcCCccCCCCC
Q 010272 475 RIDDIVSGIKKKQAPG 490 (514)
Q Consensus 475 ~id~ii~~~~~~~~~~ 490 (514)
|+|.||...|.+..++
T Consensus 511 rvD~Iik~aPR~r~~~ 526 (527)
T KOG0363|consen 511 RVDNIIKAAPRERERD 526 (527)
T ss_pred hhhhhhhcCCcccccC
Confidence 9999999998887553
No 26
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-88 Score=658.07 Aligned_cols=482 Identities=70% Similarity=1.076 Sum_probs=468.8
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|.||+.++.|.+..||||..|++.+++.||.|+-+.+++.+||+++||||||+++|++++|.++..++++|+||..|+++
T Consensus 44 m~kmlld~~g~i~~tndg~ailrei~Vahpaaksmiel~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka 123 (527)
T KOG0364|consen 44 MLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKA 123 (527)
T ss_pred HHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhhhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEEe
Q 010272 81 YNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKV 160 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~i 160 (514)
|.+|++.++..++++++|+|.++...++.++.+++.+|+.+.|++.++++..+|+..++.+ +|. ++|+.++.+++|+
T Consensus 124 ~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~--~g~-e~dik~y~kveKv 200 (527)
T KOG0364|consen 124 YIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVE--NGR-EIDIKRYAKVEKV 200 (527)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhc--cCc-eechhhhcccccc
Confidence 9999999999999999999998899999999999999999999999999999999999874 453 8999999999999
Q ss_pred cCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHH
Q 010272 161 PGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240 (514)
Q Consensus 161 ~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i~ 240 (514)
+||.+.+|++++|+.+++.+.|| .|++.++||||+++||+|+|.+.++...+++...++|...++-|++++..+++.|+
T Consensus 201 pgg~l~~s~vl~Gv~~nkdv~Hp-kmrr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii 279 (527)
T KOG0364|consen 201 PGGLLEDSCVLKGVMINKDVTHP-KMRRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVII 279 (527)
T ss_pred CcccccccceecceeeccccCcH-HHHHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEE
Q 010272 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFI 320 (514)
Q Consensus 241 ~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l 320 (514)
...++||++++++++.+++||.+.||++++++++++..|++++|||.++++.+++.+.+.|+.|+.|+.+++|+++|.||
T Consensus 280 ~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~ 359 (527)
T KOG0364|consen 280 AVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFF 359 (527)
T ss_pred eecccEEEeccchhHHHHHHHHhcCchhhhhhhccccchhhhhcCceeccChhhCchhccCcccceeeeeccCchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred EcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHHHHh
Q 010272 321 VDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIA 400 (514)
Q Consensus 321 ~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~a 400 (514)
..|+.++.|||++|||+..+++|.+|.+.||+.++|+.+-+|+++||||++||.+|+.|.+.+...++-+++.+.+.|.|
T Consensus 360 ~~Ck~pkaCtillrg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~A 439 (527)
T KOG0364|consen 360 TDCKEPKACTILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGA 439 (527)
T ss_pred hhcCCCcceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred hhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhhhh
Q 010272 401 FEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 480 (514)
Q Consensus 401 L~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii 480 (514)
|+.+||+|++|+|.+++..+..++..|..|. ..+|+|+++|.++||.+.++|+|+.+|.+..++|+|.++++||+|+|+
T Consensus 440 lEviPrtliqncGan~Ir~lTalr~kh~~G~-~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIv 518 (527)
T KOG0364|consen 440 LEVIPRTLIQNCGANPIRALTALRAKHKEGQ-RVWGIDGETGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIV 518 (527)
T ss_pred ceeccHHHHhhcCccHHHHHHHHHHHhcCcc-eeecccCceeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhcee
Confidence 9999999999999999999999999999887 788999999999999999999999999999999999999999999999
Q ss_pred cCCccCC
Q 010272 481 SGIKKKQ 487 (514)
Q Consensus 481 ~~~~~~~ 487 (514)
.+..++.
T Consensus 519 sg~kk~v 525 (527)
T KOG0364|consen 519 SGKKKRV 525 (527)
T ss_pred eeeeecc
Confidence 8876653
No 27
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.6e-84 Score=686.29 Aligned_cols=431 Identities=23% Similarity=0.342 Sum_probs=394.7
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccCh----HHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhh
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTV 76 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~ 76 (514)
|||||+++.|+++|||||+||+++|+++|| +|+|++++|++|++++||||||+++|+++||+++.++++.|+||..
T Consensus 35 ~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~ 114 (542)
T PRK12849 35 RNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMD 114 (542)
T ss_pred CCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHH
Confidence 799999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCccccee
Q 010272 77 ICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIK 156 (514)
Q Consensus 77 I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~ 156 (514)
|++||+.|++.+++.|+++++|++ +.+.|.++++|+. ++++++++++++|+..++. ++. +.
T Consensus 115 I~~G~~~A~~~~~~~L~~~s~~~~--~~~~l~~va~ts~------~~~~~l~~lv~~Av~~v~~---~g~--------i~ 175 (542)
T PRK12849 115 LKRGIDKAVEAVVEELKALARPVS--GSEEIAQVATISA------NGDEEIGELIAEAMEKVGK---DGV--------IT 175 (542)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhc------CChHHHHHHHHHHHHHhcc---CCc--------Ee
Confidence 999999999999999999999986 5778999999884 4789999999999999975 332 44
Q ss_pred EEEecCCCCCC-ceeEeeEEEecccCCCC------CCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHH
Q 010272 157 VEKVPGGQLED-SRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEE 229 (514)
Q Consensus 157 i~~i~G~~~~d-s~li~Giv~~~~~~~~~------~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~ 229 (514)
+. .|+..+| +++++|++|++++.++. .|++.++||+|+++|+.+ .+.+++.+
T Consensus 176 i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i-------------~~~~~~~~------ 234 (542)
T PRK12849 176 VE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKI-------------SSLQDLLP------ 234 (542)
T ss_pred EE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCc-------------CCHHHHHH------
Confidence 43 5888775 79999999999998872 368999999999999964 34455444
Q ss_pred HHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHc------CCeEEecCC-----hhHHHHHHHHhCCeecc-----CCC
Q 010272 230 EYIENLCMQILKFKPDLVITEKGLSDLACHYLSKA------GVSAIRRLR-----KTDNNRIAKACGAVIVN-----RPD 293 (514)
Q Consensus 230 ~~~~~~v~~i~~~~~~lVi~~~~i~~~al~~l~~~------~I~~v~~v~-----~~~l~~i~~~tGa~ii~-----~~~ 293 (514)
+++++.+.|++|||++++|++.|+++|..+ +|+++++.+ +++|+|||.+|||++++ +++
T Consensus 235 -----~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~ 309 (542)
T PRK12849 235 -----LLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLE 309 (542)
T ss_pred -----HHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcc
Confidence 678999999999999999999999999999 899999777 56699999999999999 689
Q ss_pred CCCCCccCCccceEEEEEECCeEEEEEEcCCCC-----------------------------------CeeEEEEccCCH
Q 010272 294 ELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP-----------------------------------KACTVLLRGASK 338 (514)
Q Consensus 294 ~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~-----------------------------------~~~TIll~G~t~ 338 (514)
++++.++|+ |+.+++.+ ++++++++|.++ +.|||+|||+|+
T Consensus 310 ~~~~~~LG~-~~~v~~~~---~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~ 385 (542)
T PRK12849 310 EVTLDDLGR-AKRVTITK---DNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATE 385 (542)
T ss_pred cCCHHHCce-eeEEEEee---eeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCH
Confidence 999899999 99998764 888999888654 589999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHHHHhhhhhHHHHHHhcCCCHHH
Q 010272 339 DLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIR 418 (514)
Q Consensus 339 ~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~ 418 (514)
.+++|++|+++||++++++++++| +|||||++|++++.+|.+++ ..++++++++++|++||+.||++||+|||+|+.+
T Consensus 386 ~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~-~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~ 463 (542)
T PRK12849 386 VELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELA-GLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSV 463 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Confidence 999999999999999999999998 99999999999999999988 7889999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhhhhcCCccCC
Q 010272 419 TMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQ 487 (514)
Q Consensus 419 ~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~ 487 (514)
++.+|+..| .++|+|+.+|+++||++.|||||+.+|.++|+.|+|+|++||++|++|...|++.
T Consensus 464 vi~~L~~~~-----~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~ 527 (542)
T PRK12849 464 VVAKVLELE-----DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEEE 527 (542)
T ss_pred HHHHHHhhC-----CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCccC
Confidence 999998775 5799999999999999999999999999999999999999999999998766443
No 28
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.9e-84 Score=686.11 Aligned_cols=432 Identities=24% Similarity=0.352 Sum_probs=398.0
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccCh----HHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhh
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTV 76 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~ 76 (514)
|+|||+++.|+++|||||+||+++|+++|| +++|+++++++|++++||||||+++|+++||+++.++++.|+||..
T Consensus 35 ~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~ 114 (542)
T PRK00013 35 RNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMD 114 (542)
T ss_pred CCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 799999999999999999999999999999 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCccccee
Q 010272 77 ICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIK 156 (514)
Q Consensus 77 I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~ 156 (514)
|++||+.|++.++++|+++++|++ +.++|.+++.|++ ++++.+++++++|+..++. ++. |.
T Consensus 115 I~~G~~~A~~~~~~~L~~~a~~~~--~~~~l~~va~ts~------~~~~~ls~lv~~Av~~v~~---~g~--------i~ 175 (542)
T PRK00013 115 LKRGIDKAVEAAVEELKKISKPVE--DKEEIAQVATISA------NGDEEIGKLIAEAMEKVGK---EGV--------IT 175 (542)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHhcc------cchHHHHHHHHHHHHHhCc---CCc--------EE
Confidence 999999999999999999999986 5788999998874 4789999999999999974 332 77
Q ss_pred EEEecCCCCCCceeEeeEEEecccCCCC------CCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHH
Q 010272 157 VEKVPGGQLEDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEE 230 (514)
Q Consensus 157 i~~i~G~~~~ds~li~Giv~~~~~~~~~------~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~ 230 (514)
|++..| ...++++++|++|++++.++. .|++.++||+|+++|+.+ .+.+++.
T Consensus 176 i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i-------------~~~~~l~-------- 233 (542)
T PRK00013 176 VEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKI-------------SNIQDLL-------- 233 (542)
T ss_pred EEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCcc-------------CCHHHHH--------
Confidence 877777 778999999999999998872 358899999999999964 4455544
Q ss_pred HHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcC------CeEEecCC-----hhHHHHHHHHhCCeecc-----CCCC
Q 010272 231 YIENLCMQILKFKPDLVITEKGLSDLACHYLSKAG------VSAIRRLR-----KTDNNRIAKACGAVIVN-----RPDE 294 (514)
Q Consensus 231 ~~~~~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~------I~~v~~v~-----~~~l~~i~~~tGa~ii~-----~~~~ 294 (514)
++++++.+.|++||+++++|++.++++|..++ |+++++.+ +++|+||+.+||+++++ ++++
T Consensus 234 ---~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~ 310 (542)
T PRK00013 234 ---PVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLED 310 (542)
T ss_pred ---HHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCccc
Confidence 46788999999999999999999999999996 88988776 88999999999999999 7999
Q ss_pred CCCCccCCccceEEEEEECCeEEEEEEcCCCCC-----------------------------------eeEEEEccCCHh
Q 010272 295 LQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPK-----------------------------------ACTVLLRGASKD 339 (514)
Q Consensus 295 l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~-----------------------------------~~TIll~G~t~~ 339 (514)
+++.++|+ |+.+++.. ++|++|++|.+++ .+||+|||+|+.
T Consensus 311 ~~~~~LG~-~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~ 386 (542)
T PRK00013 311 ATLEDLGQ-AKKVVVTK---DNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEV 386 (542)
T ss_pred CCHHHCCe-eeEEEEec---CEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHH
Confidence 99999999 99998764 8899999886654 789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHHHHhhhhhHHHHHHhcCCCHHHH
Q 010272 340 LLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRT 419 (514)
Q Consensus 340 ~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~ 419 (514)
+++|++|+++||++++++++++| +|||||++|++++.+|+++ ...++.+++++++|++||+.||++||+|||+|+.++
T Consensus 387 ~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v 464 (542)
T PRK00013 387 EMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEAL-KGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVV 464 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 99999999999999999999998 9999999999999999988 677889999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhhhhcCCccC
Q 010272 420 MTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK 486 (514)
Q Consensus 420 ~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~ 486 (514)
+.+|+..| ++++|+|+.+|++.||++.|||||+.||.++|+.|+++|++||++|++|...|++
T Consensus 465 l~~l~~~~----~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~ 527 (542)
T PRK00013 465 VEKVKNGK----GKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPEK 527 (542)
T ss_pred HHHHHhhc----CCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99998877 3689999999999999999999999999999999999999999999999876643
No 29
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.6e-83 Score=683.52 Aligned_cols=431 Identities=22% Similarity=0.319 Sum_probs=395.3
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccCh----HHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhh
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTV 76 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~ 76 (514)
|+|||+++.|+++|||||+||+++|+++|| +|+|++++|++|++++||||||+++|+++||+++.+++++|+||..
T Consensus 36 ~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~ 115 (541)
T PRK12851 36 RNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMD 115 (541)
T ss_pred CCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 799999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCccccee
Q 010272 77 ICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIK 156 (514)
Q Consensus 77 I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~ 156 (514)
|++||+.|++.++++|+++++|++ +.+.+.++++++. ++++.+++++++|+..++. +|. +.
T Consensus 116 I~~G~~~a~~~~~~~L~~~s~~~~--~~~~l~~va~~s~------~~~~~l~~lv~~Av~~vg~---~g~--------i~ 176 (541)
T PRK12851 116 LKRGIDRAVAAVVEELKANARPVT--TNAEIAQVATISA------NGDAEIGRLVAEAMEKVGN---EGV--------IT 176 (541)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhc------cChHHHHHHHHHHHHHhcc---cCc--------eE
Confidence 999999999999999999999986 5778999998773 5789999999999999975 342 56
Q ss_pred EEEecCCCCCCceeEeeEEEecccCCCC------CCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHH
Q 010272 157 VEKVPGGQLEDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEE 230 (514)
Q Consensus 157 i~~i~G~~~~ds~li~Giv~~~~~~~~~------~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~ 230 (514)
|.+.. +...++++++|++|++++.++. .|+++++||+|+++|++++ +.++
T Consensus 177 i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~-------------~~~~---------- 232 (541)
T PRK12851 177 VEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKIS-------------NLQD---------- 232 (541)
T ss_pred EEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcC-------------cHHH----------
Confidence 66655 4667899999999999999873 4899999999999999853 2222
Q ss_pred HHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCC------eEEec-----CChhHHHHHHHHhCCeecc-----CCCC
Q 010272 231 YIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGV------SAIRR-----LRKTDNNRIAKACGAVIVN-----RPDE 294 (514)
Q Consensus 231 ~~~~~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I------~~v~~-----v~~~~l~~i~~~tGa~ii~-----~~~~ 294 (514)
+.++++.+.+.|++|||++++|++.++++|..+|| +++++ +++++|+||+.+|||++++ ++++
T Consensus 233 -i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~ 311 (541)
T PRK12851 233 -LLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLEN 311 (541)
T ss_pred -HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCc
Confidence 44678899999999999999999999999999997 77775 9999999999999999999 7888
Q ss_pred CCCCccCCccceEEEEEECCeEEEEEEcCCCC-----------------------------------CeeEEEEccCCHh
Q 010272 295 LQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP-----------------------------------KACTVLLRGASKD 339 (514)
Q Consensus 295 l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~-----------------------------------~~~TIll~G~t~~ 339 (514)
+++.++|+ |+.+++.+ ++|+++.+|.++ ..+||+|||+|+.
T Consensus 312 ~~~~~LG~-~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~ 387 (541)
T PRK12851 312 VTLEQLGR-AKKVVVEK---ENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEV 387 (541)
T ss_pred CCHHHcCC-ccEEEEEc---ceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHH
Confidence 98889999 99998876 888999887654 3889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHHHHhhhhhHHHHHHhcCCCHHHH
Q 010272 340 LLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRT 419 (514)
Q Consensus 340 ~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~ 419 (514)
+++|++|+++||++++++++++| +|||||++|+++|.+|++++.. ++++++++++|++||+.||++||+|||+|+.++
T Consensus 388 ~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v 465 (541)
T PRK12851 388 EVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLETA-NGDQRTGVEIVRRALEAPVRQIAENAGAEGSVV 465 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 99999999999999999999998 9999999999999999998875 889999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhhhhcCCccC
Q 010272 420 MTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK 486 (514)
Q Consensus 420 ~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~ 486 (514)
+.+|+..| .++|+|+.+|+++||++.|||||+.||.++|+.|+|+|++||++|++|...|++
T Consensus 466 l~~l~~~~-----~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~ 527 (541)
T PRK12851 466 VGKLREKP-----GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKK 527 (541)
T ss_pred HHHHHhhC-----CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCC
Confidence 99998876 579999999999999999999999999999999999999999999999886644
No 30
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.5e-82 Score=676.43 Aligned_cols=431 Identities=22% Similarity=0.319 Sum_probs=390.9
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChH----HHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhh
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPA----AKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTV 76 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~----a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~ 76 (514)
|+|||+++.|+++|||||+||+++|+++||+ ++|++++|++|++++||||||+++|+++||+++.++++.|+||..
T Consensus 36 ~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~ 115 (544)
T PRK12850 36 RNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMD 115 (544)
T ss_pred CCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHH
Confidence 7999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCccccee
Q 010272 77 ICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIK 156 (514)
Q Consensus 77 I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~ 156 (514)
|++||+.|++.++++|++++++++ +.+.|.+++++++ +.++.+++++++|+..++. +|. ++
T Consensus 116 I~~G~~~a~~~~~~~L~~~s~~v~--~~~~l~~va~~s~------~~~~~l~~lv~eAv~~vg~---~g~--i~------ 176 (544)
T PRK12850 116 LKRGIDLAVAAVVDELKKIAKKVT--SSKEIAQVATISA------NGDESIGEMIAEAMDKVGK---EGV--IT------ 176 (544)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhc------CCHHHHHHHHHHHHHHhcc---cCc--ee------
Confidence 999999999999999999999986 5788999998874 3478999999999999975 342 33
Q ss_pred EEEecCCCCCCceeEeeEEEecccCCCC------CCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHH
Q 010272 157 VEKVPGGQLEDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEE 230 (514)
Q Consensus 157 i~~i~G~~~~ds~li~Giv~~~~~~~~~------~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~ 230 (514)
+..... .-.++++++|++|++++.++. .|++.++||+|+++|+.++ +.++
T Consensus 177 v~~~~~-~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~-------------~~~~---------- 232 (544)
T PRK12850 177 VEEAKT-LGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKIS-------------NLQD---------- 232 (544)
T ss_pred eEEccc-cCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccC-------------CHHH----------
Confidence 322211 226889999999999999872 2588999999999999753 2222
Q ss_pred HHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCC------eEEec-----CChhHHHHHHHHhCCeecc-----CCCC
Q 010272 231 YIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGV------SAIRR-----LRKTDNNRIAKACGAVIVN-----RPDE 294 (514)
Q Consensus 231 ~~~~~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I------~~v~~-----v~~~~l~~i~~~tGa~ii~-----~~~~ 294 (514)
+.++++++.+.|++|||++++|++.++++|..+|| +++++ +++++|+||+++||+++++ ++++
T Consensus 233 -i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~ 311 (544)
T PRK12850 233 -LLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLEN 311 (544)
T ss_pred -HHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCccc
Confidence 55678899999999999999999999999999999 88876 8999999999999999999 7899
Q ss_pred CCCCccCCccceEEEEEECCeEEEEEEcCCCC-----------------------------------CeeEEEEccCCHh
Q 010272 295 LQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP-----------------------------------KACTVLLRGASKD 339 (514)
Q Consensus 295 l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~-----------------------------------~~~TIll~G~t~~ 339 (514)
+++.++|+ |+.+++.+ ++|+++.+|.++ +.+||+|||+|+.
T Consensus 312 ~~~~~LG~-~~~v~~~~---~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~ 387 (544)
T PRK12850 312 VTLDMLGR-AKRVLITK---ENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEV 387 (544)
T ss_pred CCHHHcCC-CcEEEEEe---eeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHH
Confidence 99889999 99998775 788999888653 4899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHHHHhhhhhHHHHHHhcCCCHHHH
Q 010272 340 LLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRT 419 (514)
Q Consensus 340 ~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~ 419 (514)
+++|++|+++||++++++++++| ||||||++|++++.+|+++ ...++++|+++++|++||+.||++||+|||+|+.++
T Consensus 388 ~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v 465 (544)
T PRK12850 388 EVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRARSALRGL-KGANADETAGIDIVRRALEEPLRQIATNAGFEGSVV 465 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 99999999999999999999997 9999999999999999988 667889999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhhhhcCCccC
Q 010272 420 MTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK 486 (514)
Q Consensus 420 ~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~ 486 (514)
+.+|+..| .++|+|+.+|++.||++.|||||+.||.++|++|+++|++||++|++|...|..
T Consensus 466 ~~~l~~~~-----~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~ 527 (544)
T PRK12850 466 VGKVAELP-----GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKK 527 (544)
T ss_pred HHHHHhhC-----CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccCCCC
Confidence 99998876 579999999999999999999999999999999999999999999999887653
No 31
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=2e-82 Score=677.85 Aligned_cols=434 Identities=21% Similarity=0.320 Sum_probs=394.5
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccCh----HHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhh
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTV 76 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~ 76 (514)
|||||+++.|+++|||||+||+++|+++|| +++|++++|++|++++||||||+|+|+++||+++.++++.|+||..
T Consensus 47 ~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~ 126 (555)
T PTZ00114 47 RNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMD 126 (555)
T ss_pred CcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHH
Confidence 799999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCccccee
Q 010272 77 ICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIK 156 (514)
Q Consensus 77 I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~ 156 (514)
|++||+.|.+.+++.|+++++|++ +.+.|.++++|++ ++++++++++++|+..++. +|.
T Consensus 127 I~~G~~~A~~~~~~~L~~~s~~v~--~~~~l~~va~ts~------~~~~~l~~li~eAv~~vg~---~g~---------- 185 (555)
T PTZ00114 127 LKRGIDLAVKVVLESLKEQSRPVK--TKEDILNVATISA------NGDVEIGSLIADAMDKVGK---DGT---------- 185 (555)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHHc------CChHHHHHHHHHHHHHhCc---CCc----------
Confidence 999999999999999999999986 5778999999885 3478899999999999974 332
Q ss_pred EEEecCCCCCCc-eeEeeEEEecccCCCC------CCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHH
Q 010272 157 VEKVPGGQLEDS-RVLKGVMFNKDVVAPG------KMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEE 229 (514)
Q Consensus 157 i~~i~G~~~~ds-~li~Giv~~~~~~~~~------~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~ 229 (514)
|.+..|+...+| ++++|++|++++.++. .|++.++||+|+++|++|+ +.++
T Consensus 186 I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~-------------~~~~--------- 243 (555)
T PTZ00114 186 ITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKIS-------------SIQS--------- 243 (555)
T ss_pred EEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCC-------------CHHH---------
Confidence 455789999998 7999999999998872 3689999999999999986 2333
Q ss_pred HHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcC------CeEEec-----CChhHHHHHHHHhCCeeccCC------
Q 010272 230 EYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAG------VSAIRR-----LRKTDNNRIAKACGAVIVNRP------ 292 (514)
Q Consensus 230 ~~~~~~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~------I~~v~~-----v~~~~l~~i~~~tGa~ii~~~------ 292 (514)
+..+++++.+.|++|+|++++|++.++++|..++ |+++++ +++++|+|||.+||++++++.
T Consensus 244 --i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l 321 (555)
T PTZ00114 244 --ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKL 321 (555)
T ss_pred --HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCc
Confidence 3356788999999999999999999999999986 888865 778999999999999999997
Q ss_pred CCCCCCccCCccceEEEEEECCeEEEEEEcCC-----------------------------------CCCeeEEEEccCC
Q 010272 293 DELQESDVGTGAGLFEVKKIGDEFFAFIVDCK-----------------------------------DPKACTVLLRGAS 337 (514)
Q Consensus 293 ~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~-----------------------------------~~~~~TIll~G~t 337 (514)
+++++.++|+ |+.+++++ +++.++.++. +++.|||+|||+|
T Consensus 322 ~~~~~~~LG~-a~~v~~~~---~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t 397 (555)
T PTZ00114 322 DDFDPSMLGS-AKKVTVTK---DETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGAS 397 (555)
T ss_pred ccCCHHHcCC-CceEEEEe---ceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCC
Confidence 7788888999 99999887 4556666554 6789999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhcc--CCCCcchHHHHHHHHhhhhhHHHHHHhcCCC
Q 010272 338 KDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSS--SIEGIEKWPYEAAAIAFEAIPRTLAQNCGIN 415 (514)
Q Consensus 338 ~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~--~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~ 415 (514)
+.+++|++|+++||++++++++++| +|||||++|+++|.+|++++. ..++++++++++|++||+.||++||+|||+|
T Consensus 398 ~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d 476 (555)
T PTZ00114 398 EVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVE 476 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999988 999999999999999998875 5778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhhhhcCCccCCC
Q 010272 416 VIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQA 488 (514)
Q Consensus 416 ~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~~ 488 (514)
+.+++.+|+. .+ ++++|+|+.+|++.||++.|||||+.||+++|++|+++|++||++|++|...|.+..
T Consensus 477 ~~~v~~~l~~---~~-~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~~~ 545 (555)
T PTZ00114 477 GAVVVEKILE---KK-DPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKEKK 545 (555)
T ss_pred HHHHHHHHHh---cC-CCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhCCcccc
Confidence 9999999976 23 378999999999999999999999999999999999999999999999998765543
No 32
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=6e-82 Score=673.53 Aligned_cols=431 Identities=20% Similarity=0.296 Sum_probs=391.9
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccc----cChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhh
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDV----AHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTV 76 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~----~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~ 76 (514)
|+|||+++.|+++|||||+||+++|++ +||+++|+++++++|++++||||||+++|+++||+++.++++.|+||..
T Consensus 36 ~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~ 115 (545)
T PRK12852 36 RNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMD 115 (545)
T ss_pred CCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 799999999999999999999999999 5999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCccccee
Q 010272 77 ICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIK 156 (514)
Q Consensus 77 I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~ 156 (514)
|++||++|++.+++.|+++++|++. .+++.++++++. +.++.+++++++|+..+++ ++. |.
T Consensus 116 I~~G~~~A~~~~l~~L~~~s~~v~~--~~~l~~va~~s~------~~~~~l~~li~eA~~~vg~---~g~--------i~ 176 (545)
T PRK12852 116 LKRGIDIAVAAVVKDIEKRAKPVAS--SAEIAQVGTISA------NGDAAIGKMIAQAMQKVGN---EGV--------IT 176 (545)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCC--HHHHHHHHhhhc------CChHHHHHHHHHHHHHhcc---CCc--------ee
Confidence 9999999999999999999999873 566999998774 3478899999999999975 343 45
Q ss_pred EEEecCCCC-CCceeEeeEEEecccCCCC------CCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHH
Q 010272 157 VEKVPGGQL-EDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEE 229 (514)
Q Consensus 157 i~~i~G~~~-~ds~li~Giv~~~~~~~~~------~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~ 229 (514)
+. .|+.. .++++++|++|++++.+|. .|++.++||+|+++++.++ +.++
T Consensus 177 v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~-------------~~~~--------- 232 (545)
T PRK12852 177 VE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLS-------------GLQA--------- 232 (545)
T ss_pred ee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccC-------------CHHH---------
Confidence 54 36665 6999999999999999873 4889999999999998643 3333
Q ss_pred HHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHc------CCeEEecCC-----hhHHHHHHHHhCCeecc-----CCC
Q 010272 230 EYIENLCMQILKFKPDLVITEKGLSDLACHYLSKA------GVSAIRRLR-----KTDNNRIAKACGAVIVN-----RPD 293 (514)
Q Consensus 230 ~~~~~~v~~i~~~~~~lVi~~~~i~~~al~~l~~~------~I~~v~~v~-----~~~l~~i~~~tGa~ii~-----~~~ 293 (514)
+..+++.+.+.|++|||++++|++.++++|..| +|+++++.+ +++|+||+.+|||++++ +++
T Consensus 233 --i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~ 310 (545)
T PRK12852 233 --MLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLE 310 (545)
T ss_pred --HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcC
Confidence 445779999999999999999999999999886 799998655 89999999999999999 789
Q ss_pred CCCCCccCCccceEEEEEECCeEEEEEEcCCC-----------------------------------CCeeEEEEccCCH
Q 010272 294 ELQESDVGTGAGLFEVKKIGDEFFAFIVDCKD-----------------------------------PKACTVLLRGASK 338 (514)
Q Consensus 294 ~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~-----------------------------------~~~~TIll~G~t~ 338 (514)
++++.++|+ |+.+++.+ ++++++.++.. ++++||+|||+|+
T Consensus 311 ~~~~~~lG~-~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~ 386 (545)
T PRK12852 311 NVTLKMLGR-AKKVVIDK---ENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATE 386 (545)
T ss_pred CCCHHHCCC-CcEEEEEc---cEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCH
Confidence 999989999 99998877 68888988765 3789999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHHHHhhhhhHHHHHHhcCCCHHH
Q 010272 339 DLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIR 418 (514)
Q Consensus 339 ~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~ 418 (514)
.+++|++|+++||++++++++++| +|||||++|++++.+|.+++.. ++.+|+++++|++||+.||++||+|||+|+.+
T Consensus 387 ~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~ 464 (545)
T PRK12852 387 VEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINND-NADVQAGINIVLKALEAPIRQIAENAGVEGSI 464 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 999999999999999999999998 9999999999999999998876 77899999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhhhhcCCccC
Q 010272 419 TMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK 486 (514)
Q Consensus 419 ~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~ 486 (514)
++.+|+..| ++++|||+.+|+++||++.|||||+.||+++|++|+|+|++||++|++|...|++
T Consensus 465 vl~~l~~~~----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~ 528 (545)
T PRK12852 465 VVGKILENK----SETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKK 528 (545)
T ss_pred HHHHHHhhc----CCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcCCCC
Confidence 999998877 3789999999999999999999999999999999999999999999999876654
No 33
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=6.4e-82 Score=669.03 Aligned_cols=425 Identities=25% Similarity=0.366 Sum_probs=391.9
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccCh----HHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhh
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTV 76 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~ 76 (514)
|+|||+++.|+++|||||+||+++|+++|| +++|+++++++|++++||||||+++|+++||+++.++++.|+||..
T Consensus 33 ~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~ 112 (520)
T cd03344 33 RNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMD 112 (520)
T ss_pred CcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhccccCCCcchHHHHHHHHHHHHHHHHhCCCCchH
Confidence 799999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCccccee
Q 010272 77 ICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIK 156 (514)
Q Consensus 77 I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~ 156 (514)
|++||+.|.+.++++|+++++|++ +.++|.++++|+++ .++++++++++|+..++. ++. |.
T Consensus 113 I~~G~~~a~~~~~~~L~~~~~~i~--~~~~l~~va~ts~~------~~~~l~~lv~~A~~~v~~---~~~--------i~ 173 (520)
T cd03344 113 LKRGIEKAVEAVVEELKKLSKPVK--TKEEIAQVATISAN------GDEEIGELIAEAMEKVGK---DGV--------IT 173 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhcC------ChHHHHHHHHHHHHHhcc---CCc--------EE
Confidence 999999999999999999999986 68899999999864 478999999999999874 232 54
Q ss_pred EEEecCCCCCC-ceeEeeEEEecccCCCC------CCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHH
Q 010272 157 VEKVPGGQLED-SRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEE 229 (514)
Q Consensus 157 i~~i~G~~~~d-s~li~Giv~~~~~~~~~------~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~ 229 (514)
+ .+|+...| +++++|++|++++.++. .|+++++||+|+++|++|+ +++++.+
T Consensus 174 v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~-------------~~~~l~~------ 232 (520)
T cd03344 174 V--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKIS-------------SIQELLP------ 232 (520)
T ss_pred E--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCC-------------CHHHHHH------
Confidence 5 47888888 79999999999998872 2457899999999999953 4445444
Q ss_pred HHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCC------eEEecC-----ChhHHHHHHHHhCCeecc-----CCC
Q 010272 230 EYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGV------SAIRRL-----RKTDNNRIAKACGAVIVN-----RPD 293 (514)
Q Consensus 230 ~~~~~~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I------~~v~~v-----~~~~l~~i~~~tGa~ii~-----~~~ 293 (514)
+++.+.+.|++||+++++|++.++++|..+|+ +++++. ++++++||+++|||++++ +++
T Consensus 233 -----~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~ 307 (520)
T cd03344 233 -----ILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLE 307 (520)
T ss_pred -----HHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcc
Confidence 67889999999999999999999999999998 776654 899999999999999999 889
Q ss_pred CCCCCccCCccceEEEEEECCeEEEEEEcCCCC-----------------------------------CeeEEEEccCCH
Q 010272 294 ELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP-----------------------------------KACTVLLRGASK 338 (514)
Q Consensus 294 ~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~-----------------------------------~~~TIll~G~t~ 338 (514)
+++++++|+ |+.+++.+ ++|+++++|..+ +.|||+|||+|+
T Consensus 308 ~~~~~~LG~-~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~ 383 (520)
T cd03344 308 DVTLEDLGR-AKKVVVTK---DDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATE 383 (520)
T ss_pred cCCHHHCCc-ceEEEEee---ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcH
Confidence 999889999 99999876 788899887654 699999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHHHHhhhhhHHHHHHhcCCCHHH
Q 010272 339 DLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIR 418 (514)
Q Consensus 339 ~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~ 418 (514)
.+++|++|+++||++++++++++| +|||||++|++++.+|++++. .++++++++++|++||+.||++|++|||+|+.+
T Consensus 384 ~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~-~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~ 461 (520)
T cd03344 384 VELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKA-LNGDEKLGIEIVRRALEAPLRQIAENAGVDGSV 461 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 999999999999999999999998 999999999999999999987 889999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhhhhc
Q 010272 419 TMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 481 (514)
Q Consensus 419 ~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 481 (514)
++.+|+..| .++|+|+.+|+++||++.|||||+.||.++|+.|+++|++||++|.+|.
T Consensus 462 vi~~l~~~~-----~~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~ 519 (520)
T cd03344 462 VVEKVLESP-----DGFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV 519 (520)
T ss_pred HHHHHHhhc-----CCEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence 999999877 3899999999999999999999999999999999999999999999885
No 34
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=1.8e-81 Score=666.83 Aligned_cols=427 Identities=23% Similarity=0.345 Sum_probs=388.2
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccCh----HHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhh
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTV 76 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~ 76 (514)
|+|||+++.|+++|||||+||+++|+++|| +++|+++++++|++++||||||+++|+++||+++.++++.|+||..
T Consensus 34 ~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~ 113 (524)
T TIGR02348 34 RNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIE 113 (524)
T ss_pred CcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHH
Confidence 799999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCccccee
Q 010272 77 ICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIK 156 (514)
Q Consensus 77 I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~ 156 (514)
|++||+.|++.++++|+++++|++ +.+.|.++++|+. ++++++++++++|+..+++ ++. |.
T Consensus 114 Ii~G~~~A~~~~l~~L~~~s~~~~--~~~~l~~va~ts~------~~~~~l~~lv~~A~~~v~~---~~~--------i~ 174 (524)
T TIGR02348 114 LKRGIEKAVEAAVEELKKLSKPVK--GKKEIAQVATISA------NNDEEIGSLIAEAMEKVGK---DGV--------IT 174 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhc------cChHHHHHHHHHHHHHhCc---CCc--------Ee
Confidence 999999999999999999999986 5788999999874 4689999999999999975 332 44
Q ss_pred EEEecCCCC-CCceeEeeEEEecccCCCC------CCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHH
Q 010272 157 VEKVPGGQL-EDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEE 229 (514)
Q Consensus 157 i~~i~G~~~-~ds~li~Giv~~~~~~~~~------~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~ 229 (514)
|.. |+.. +++++++|++|++++.++. .|++.++||+|+++++.++ +++++
T Consensus 175 v~~--g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~-------------~~~~i-------- 231 (524)
T TIGR02348 175 VEE--SKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKIS-------------NIKDL-------- 231 (524)
T ss_pred eec--CCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcC-------------CHHHH--------
Confidence 543 5555 6799999999999999872 2588999999999999744 44454
Q ss_pred HHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHc------CCeEEecCC-----hhHHHHHHHHhCCeecc-----CCC
Q 010272 230 EYIENLCMQILKFKPDLVITEKGLSDLACHYLSKA------GVSAIRRLR-----KTDNNRIAKACGAVIVN-----RPD 293 (514)
Q Consensus 230 ~~~~~~v~~i~~~~~~lVi~~~~i~~~al~~l~~~------~I~~v~~v~-----~~~l~~i~~~tGa~ii~-----~~~ 293 (514)
.++++.+.+.|++||+++++|++.++++|..+ +|+++++.+ +++|+|||.+||+++++ +++
T Consensus 232 ---~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~ 308 (524)
T TIGR02348 232 ---LPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLE 308 (524)
T ss_pred ---HHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcC
Confidence 45778999999999999999999999999887 788997664 48999999999999999 899
Q ss_pred CCCCCccCCccceEEEEEECCeEEEEEEcCCCCC-----------------------------------eeEEEEccCCH
Q 010272 294 ELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPK-----------------------------------ACTVLLRGASK 338 (514)
Q Consensus 294 ~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~-----------------------------------~~TIll~G~t~ 338 (514)
++++.++|+ |+.+++.+ ++++++.++..++ .+||+|||+|+
T Consensus 309 ~~~~~~LG~-~~~v~~~~---~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~ 384 (524)
T TIGR02348 309 EVTLDDLGK-AKKVTVDK---DNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATE 384 (524)
T ss_pred cCCHHHCCC-ceEEEEee---cEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCH
Confidence 999999999 99998775 7888998875433 78999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHHHHhhhhhHHHHHHhcCCCHHH
Q 010272 339 DLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIR 418 (514)
Q Consensus 339 ~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~ 418 (514)
.+++|++|+++||++++|+++++| ||||||++|++++.+|.+ +...++.+++++++|++||+.||++|++|||+|+.+
T Consensus 385 ~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~-~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~ 462 (524)
T TIGR02348 385 TEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALEG-LKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAV 462 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999998 999999999999999998 777888999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhhhhcCC
Q 010272 419 TMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGI 483 (514)
Q Consensus 419 ~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 483 (514)
++.+|+.. . .++|||+.+|++.||++.|||||+.||.++|++|+++|++||++|++|...
T Consensus 463 v~~~l~~~--~---~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~~ 522 (524)
T TIGR02348 463 VAEKVKES--K---GNFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADK 522 (524)
T ss_pred HHHHHHhc--C---CCeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhcC
Confidence 99999754 2 249999999999999999999999999999999999999999999999754
No 35
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=1.2e-80 Score=661.46 Aligned_cols=431 Identities=23% Similarity=0.320 Sum_probs=384.1
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHH----HHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhh
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAA----KSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTV 76 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a----~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~ 76 (514)
|+|||+++.|+++|||||+||+++|+++||++ +|++++++++++++||||||+++|+++||+++.++++.|+||..
T Consensus 35 ~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~ 114 (529)
T CHL00093 35 RNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPIS 114 (529)
T ss_pred CcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
Confidence 89999999999999999999999999999998 58888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCccccee
Q 010272 77 ICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIK 156 (514)
Q Consensus 77 I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~ 156 (514)
|++||+.|.+.+++.|+++++|++ +.+.|.++++++. ++++.+++++++|+..+++ +|. |.
T Consensus 115 I~~G~~~A~~~~l~~L~~~s~~v~--d~~~L~~VA~ts~------~~~~~l~~lv~eAv~~vg~---~g~--------i~ 175 (529)
T CHL00093 115 LKRGIEKATQYVVSQIAEYARPVE--DIQAITQVASISA------GNDEEVGSMIADAIEKVGR---EGV--------IS 175 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHhc------cChHHHHHHHHHHHHHhcc---CCc--------ee
Confidence 999999999999999999999987 5788999999874 4789999999999999975 342 44
Q ss_pred EEEecCCCCCCceeEeeEEEecccCCCC------CCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHH
Q 010272 157 VEKVPGGQLEDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEE 230 (514)
Q Consensus 157 i~~i~G~~~~ds~li~Giv~~~~~~~~~------~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~ 230 (514)
++. .++...++++++|++|+++|.+|+ .|+.+++||+|++++++|++.+ .+
T Consensus 176 ~~~-g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~------------~~---------- 232 (529)
T CHL00093 176 LEE-GKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQ------------QD---------- 232 (529)
T ss_pred ecC-CCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchH------------HH----------
Confidence 422 223456789999999999999873 3334699999999999998532 12
Q ss_pred HHHHHHHHHHHcCCcEEEeCCCCCHHHHHHH--HH----cCCeEEecCC-----hhHHHHHHHHhCCeecc-----CCCC
Q 010272 231 YIENLCMQILKFKPDLVITEKGLSDLACHYL--SK----AGVSAIRRLR-----KTDNNRIAKACGAVIVN-----RPDE 294 (514)
Q Consensus 231 ~~~~~v~~i~~~~~~lVi~~~~i~~~al~~l--~~----~~I~~v~~v~-----~~~l~~i~~~tGa~ii~-----~~~~ 294 (514)
+..+++.+.+.++++|+++++|++.++.+| ++ ++|+++++.+ +++|+|||.+|||++++ ++++
T Consensus 233 -i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~ 311 (529)
T CHL00093 233 -LLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLET 311 (529)
T ss_pred -HHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCC
Confidence 445778999999999999999999777766 66 4899999884 48899999999999999 7999
Q ss_pred CCCCccCCccceEEEEEECCeEEEEEEc---------CCC-------------------------CCeeEEEEccCCHhH
Q 010272 295 LQESDVGTGAGLFEVKKIGDEFFAFIVD---------CKD-------------------------PKACTVLLRGASKDL 340 (514)
Q Consensus 295 l~~~~lG~~~~~v~~~~ig~~~~~~l~~---------~~~-------------------------~~~~TIll~G~t~~~ 340 (514)
+++.++|+ |+.+++.+ ++++++++ |.. +..+||+|||+|+.+
T Consensus 312 ~~~~~LG~-~~~v~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~ 387 (529)
T CHL00093 312 IQLDLLGQ-ARRIIVTK---DSTTIIADGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETE 387 (529)
T ss_pred CCHHHCCc-ceEEEEec---CEEEEEecCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHH
Confidence 99999999 99998775 67788873 221 148889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhcc-CCCCcchHHHHHHHHhhhhhHHHHHHhcCCCHHHH
Q 010272 341 LNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSS-SIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRT 419 (514)
Q Consensus 341 l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~-~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~ 419 (514)
++|.+|+++||++++|+++++| +|||||++|++||.+|++++. ..++++++++++|++||+.||++||+|||+|+.++
T Consensus 388 l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v 466 (529)
T CHL00093 388 MKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVI 466 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 9999999999999999999998 999999999999999999876 78889999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhhhhcCCc
Q 010272 420 MTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK 484 (514)
Q Consensus 420 ~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 484 (514)
+.+++.. +.++|||+.+|+++||++.|||||+.||.++|+.|+|+|++||++|++|...|
T Consensus 467 ~~~l~~~-----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~~ 526 (529)
T CHL00093 467 IEKVQEQ-----DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKK 526 (529)
T ss_pred HHHHHcc-----CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999653 26899999999999999999999999999999999999999999999998765
No 36
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-82 Score=618.09 Aligned_cols=483 Identities=32% Similarity=0.471 Sum_probs=452.4
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
+|||++++.|++.+||||+|||+.|.++||++|++++.++.|++++|||||++++++++|++++.+|+..++||..|+.|
T Consensus 44 ldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~g 123 (545)
T KOG0360|consen 44 LDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISG 123 (545)
T ss_pred hhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhccccccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-hccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEE
Q 010272 81 YNKALEDAVAVLD-KIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEK 159 (514)
Q Consensus 81 ~~~a~~~~l~~L~-~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~ 159 (514)
|+.|+..+++++. .++.|++...+..|.++++|+++||+.....+++++++++|+..+..-..+|.....+. .++|.|
T Consensus 124 yr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~-~vnILk 202 (545)
T KOG0360|consen 124 YRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPIN-SVNILK 202 (545)
T ss_pred HHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceecccc-ceeEEe
Confidence 9999999999995 47888988889999999999999999999999999999999998765333454333343 489999
Q ss_pred ecCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHH
Q 010272 160 VPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQI 239 (514)
Q Consensus 160 i~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i 239 (514)
..|.+..+|.++.|+.++....+. .|+..++|+||+++++.|...+.+....+.+.+++.++.+.+.|....++.+++|
T Consensus 203 ahG~s~~eS~l~~GyaLnc~~asq-~m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kI 281 (545)
T KOG0360|consen 203 AHGKSQIESMLLPGYALNCSVASQ-MMPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKI 281 (545)
T ss_pred cCCccchhheeecceeeeccHhhh-ccccccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHH
Confidence 999999999999999999998886 8999999999999999999999999889999999999999999999999999999
Q ss_pred HHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCC------CCCCccCCccceEEEEEEC
Q 010272 240 LKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDE------LQESDVGTGAGLFEVKKIG 313 (514)
Q Consensus 240 ~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~------l~~~~lG~~~~~v~~~~ig 313 (514)
...|+|||+++++|||+++.||.+.|+++++|+++++|++|+++||+++++++.+ +.+..+|+ |+.|.+.+|+
T Consensus 282 l~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~-a~evvqeri~ 360 (545)
T KOG0360|consen 282 LATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGS-ADEVVQERIG 360 (545)
T ss_pred HhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCCeeeehhhccccccccChhhccc-hhHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999985 45678999 9999999999
Q ss_pred CeEEEEEEcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHH
Q 010272 314 DEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWP 393 (514)
Q Consensus 314 ~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~ 393 (514)
++.++.+.+.+.. .|+|++||++++.++|++|.++||+|+++..++++++||||||+|.+++-+|++++.+..++|+++
T Consensus 361 dde~ilikg~ka~-~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~la 439 (545)
T KOG0360|consen 361 DDELILIKGTKAT-SASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQLA 439 (545)
T ss_pred cceeEEeccCccc-eeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHHHH
Confidence 9999999987755 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHhcCCCHHHHHHHHHHHHhC--C-----CCceEEEeCCCCccccccccccccchHHHHHHHHHH
Q 010272 394 YEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHAN--G-----ENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTA 466 (514)
Q Consensus 394 ~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~--~-----~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A 466 (514)
+.-|+.||..+|++|+-|++.|+.+++.+++..|+. . ..+|+|+|+.+|++.|.++.|+++|..+|..+|+.|
T Consensus 440 iaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~a 519 (545)
T KOG0360|consen 440 IAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFA 519 (545)
T ss_pred HHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhhCccccccEeecceeeeeeccceeehhhhHHH
Confidence 999999999999999999999999999999988851 1 126899999999999999999999999999999999
Q ss_pred HHHHHHHhchhhhhcCCccCC
Q 010272 467 IEAACMLLRIDDIVSGIKKKQ 487 (514)
Q Consensus 467 ~e~a~~iL~id~ii~~~~~~~ 487 (514)
+|.+..+||+|+.+.-.|..+
T Consensus 520 teaaitiLriD~li~l~~~~~ 540 (545)
T KOG0360|consen 520 TEAAITILRIDDLIKLLPELQ 540 (545)
T ss_pred HHhhhhhcchhhhhhcCcccc
Confidence 999999999999997655444
No 37
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=3.1e-80 Score=661.34 Aligned_cols=432 Identities=21% Similarity=0.314 Sum_probs=387.2
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccCh----HHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhh
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTV 76 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~ 76 (514)
|+|||+++.|+++|||||+||+|+|+++|| +|+|++++|++|++++||||||+++|+++||+++.++++.|+||..
T Consensus 91 ~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~ 170 (600)
T PLN03167 91 RNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQ 170 (600)
T ss_pred CCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 799999999999999999999999999999 5999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCccccee
Q 010272 77 ICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIK 156 (514)
Q Consensus 77 I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~ 156 (514)
|++||+.|.+.+++.|+++++|++ + +.|.+++++++ ++++.|++|+++|+..+++ +|. |.
T Consensus 171 I~~G~~~A~~~~~~~L~~~s~~v~--d-~~L~~vA~tS~------~~~~~i~~liaeAv~~Vg~---~g~--------i~ 230 (600)
T PLN03167 171 ITRGIEKTAKALVKELKKMSKEVE--D-SELADVAAVSA------GNNYEVGNMIAEAMSKVGR---KGV--------VT 230 (600)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC--H-HHHHHHHHHhc------cCcHHHHHHHHHHHHHhcc---CCc--------EE
Confidence 999999999999999999999886 3 56999999885 4577899999999999975 343 44
Q ss_pred EEEecCCCCCCc-eeEeeEEEecccCCCC------CCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHH
Q 010272 157 VEKVPGGQLEDS-RVLKGVMFNKDVVAPG------KMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEE 229 (514)
Q Consensus 157 i~~i~G~~~~ds-~li~Giv~~~~~~~~~------~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~ 229 (514)
+ ..|++.+|+ ++++|++|+++|.+|+ .|+++++||+|+++|+. +.+.+++.+
T Consensus 231 v--~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~-------------i~~~~~l~~------ 289 (600)
T PLN03167 231 L--EEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKK-------------ITNARDLIG------ 289 (600)
T ss_pred e--ccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccc-------------cCCHHHHHH------
Confidence 4 368888887 8999999999999863 78999999999999986 445667666
Q ss_pred HHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHH------HcCCeEEecCC-----hhHHHHHHHHhCCeecc-----CCC
Q 010272 230 EYIENLCMQILKFKPDLVITEKGLSDLACHYLS------KAGVSAIRRLR-----KTDNNRIAKACGAVIVN-----RPD 293 (514)
Q Consensus 230 ~~~~~~v~~i~~~~~~lVi~~~~i~~~al~~l~------~~~I~~v~~v~-----~~~l~~i~~~tGa~ii~-----~~~ 293 (514)
+++.+.+.++++|+++++|++.++++|. ..+|+++++.+ +++|+||+.+||+++++ +++
T Consensus 290 -----~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~ 364 (600)
T PLN03167 290 -----ILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLD 364 (600)
T ss_pred -----HHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcc
Confidence 4467888999999999999999999998 66799999885 88999999999999999 788
Q ss_pred CCCCCccCCccceEEEEE-----ECC--------eEEEEEEcCC------------C------CCeeEEE-EccCCHhHH
Q 010272 294 ELQESDVGTGAGLFEVKK-----IGD--------EFFAFIVDCK------------D------PKACTVL-LRGASKDLL 341 (514)
Q Consensus 294 ~l~~~~lG~~~~~v~~~~-----ig~--------~~~~~l~~~~------------~------~~~~TIl-l~G~t~~~l 341 (514)
++++.++|+ |+.+++++ +|+ +|+.+|+++. . ++.+|++ |||+|+.++
T Consensus 365 ~~~~~~LG~-a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l 443 (600)
T PLN03167 365 KVGKEVLGT-AAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETEL 443 (600)
T ss_pred cCCHHHCce-eeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHH
Confidence 898889999 99999887 665 4777776653 0 1245555 999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcch-HHHHHHHHhhhhhHHHHHHhcCCCHHHHH
Q 010272 342 NEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEK-WPYEAAAIAFEAIPRTLAQNCGINVIRTM 420 (514)
Q Consensus 342 ~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~-~~~~~~a~aL~~ip~~L~~NaG~~~~~~~ 420 (514)
+|+||+++||++++|+++++| +|||||++|++++.+|++++...++.+| .++++|++||+.||++||+|||+|+.+++
T Consensus 444 ~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv 522 (600)
T PLN03167 444 KEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVS 522 (600)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHH
Confidence 999999999999999999999 9999999999999999998877777776 45999999999999999999999999999
Q ss_pred HHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhhhhcCCc
Q 010272 421 TALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK 484 (514)
Q Consensus 421 ~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 484 (514)
.+|+..+ ++++|||+.+|+++||++.|||||+.||+++|+.|+++|++||++|++|...|
T Consensus 523 ~~L~~~~----~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~ 582 (600)
T PLN03167 523 EKVLSND----NPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIK 582 (600)
T ss_pred HHHHhcC----CCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9997432 37899999999999999999999999999999999999999999999998764
No 38
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=1.9e-79 Score=652.16 Aligned_cols=433 Identities=22% Similarity=0.296 Sum_probs=388.5
Q ss_pred CceeeecCCCCEEEecCHHHHhhccccc----ChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhh
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTV 76 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~----hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~ 76 (514)
|+|||.++.|+++|||||+||+++|+++ ||+++|+++++++|++++||||||+|+|+++||+++.++++.|+||..
T Consensus 36 ~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~ 115 (546)
T PRK14104 36 RNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMD 115 (546)
T ss_pred CceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHCCCCccH
Confidence 7999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCccccee
Q 010272 77 ICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIK 156 (514)
Q Consensus 77 I~~g~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~ 156 (514)
|++||++|++.+++.|+++++|++. .+.+.++++++. ++++.+++++++|+..++. +|. |.
T Consensus 116 I~~G~~~A~~~~~~~L~~~a~~v~~--~~~l~~va~~s~------~~d~~i~~lv~~Av~~vg~---~g~--------i~ 176 (546)
T PRK14104 116 LKRGIDLAVEAVVADLVKNSKKVTS--NDEIAQVGTISA------NGDAEIGKFLADAMKKVGN---EGV--------IT 176 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCC--HHHHHHHHHHHh------cCchHHHHHHHHHHHHhcc---CCc--------ee
Confidence 9999999999999999999999974 467999998874 3467899999999999975 343 55
Q ss_pred EEEecCCCC-CCceeEeeEEEecccCCCC------CCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHH
Q 010272 157 VEKVPGGQL-EDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEE 229 (514)
Q Consensus 157 i~~i~G~~~-~ds~li~Giv~~~~~~~~~------~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~ 229 (514)
+..+ +.. .++++++|++|++++.+|. .++.+++||+|++++..+ .+.++
T Consensus 177 v~~~--~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i-------------~~~~~--------- 232 (546)
T PRK14104 177 VEEA--KSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKL-------------SSLNE--------- 232 (546)
T ss_pred eEec--ccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhh-------------cCHHH---------
Confidence 6543 345 5899999999999998871 346789999999998553 33344
Q ss_pred HHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHH------cCCeEEecCC-----hhHHHHHHHHhCCeeccC-----CC
Q 010272 230 EYIENLCMQILKFKPDLVITEKGLSDLACHYLSK------AGVSAIRRLR-----KTDNNRIAKACGAVIVNR-----PD 293 (514)
Q Consensus 230 ~~~~~~v~~i~~~~~~lVi~~~~i~~~al~~l~~------~~I~~v~~v~-----~~~l~~i~~~tGa~ii~~-----~~ 293 (514)
+..+++.+.+.|++|||++++|++.|+++|.. .+|+++++.+ +++|+||+.+||++++++ ++
T Consensus 233 --i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~ 310 (546)
T PRK14104 233 --LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLE 310 (546)
T ss_pred --HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcC
Confidence 33578999999999999999999999999985 4678886665 899999999999999998 89
Q ss_pred CCCCCccCCccceEEEEEECCeEEEEEEcCCCC-----------------------------------CeeEEEEccCCH
Q 010272 294 ELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP-----------------------------------KACTVLLRGASK 338 (514)
Q Consensus 294 ~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~-----------------------------------~~~TIll~G~t~ 338 (514)
++++.++|+ |+.+++ ++++++++.+|..+ +.+||+|||+|+
T Consensus 311 ~~~~~~LG~-a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~ 386 (546)
T PRK14104 311 NVTLQMLGR-AKKVMI---DKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATE 386 (546)
T ss_pred cCCHHHCCc-eeEEEE---cCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCH
Confidence 999889999 998874 56889999988764 899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHHHHhhhhhHHHHHHhcCCCHHH
Q 010272 339 DLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIR 418 (514)
Q Consensus 339 ~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~ 418 (514)
.+++|++|+++||++++++++++| +|||||++|++++..|+++. ..++++++++++|++||+.||++|++|||+|+.+
T Consensus 387 ~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~-~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~ 464 (546)
T PRK14104 387 VEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIK-TKNDDQKTGVEIVRKALSAPARQIAINAGEDGSV 464 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHH
Confidence 999999999999999999999998 99999999999999999874 3577899999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhhhhcCCccCCC
Q 010272 419 TMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQA 488 (514)
Q Consensus 419 ~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~~ 488 (514)
++.+|+..| ++++|+|+.+|+++||++.|||||+.||+++|++|+++|++||++|++|...|++..
T Consensus 465 v~~~l~~~~----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I~~~~~~~~ 530 (546)
T PRK14104 465 IVGKILEKE----QYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGG 530 (546)
T ss_pred HHHHHHhcC----CCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCC
Confidence 999997654 367999999999999999999999999999999999999999999999987665443
No 39
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-78 Score=597.78 Aligned_cols=471 Identities=29% Similarity=0.470 Sum_probs=438.4
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|+||++|+.|++.+|||.+||+++|+++||+||+++++++.|+++.||||+++|+|+++||++|.+|+..|++|..|+.|
T Consensus 51 ~nK~vvnh~~k~~~TndaatIlrelev~HPaakllv~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~g 130 (537)
T KOG0362|consen 51 RNKMVVNHLGKTFVTNDAATILRELEVEHPAAKLLVEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEG 130 (537)
T ss_pred cceeeecccceEEEcCChHHHHHHhhccCcHHHHHHHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccc--CCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEE
Q 010272 81 YNKALEDAVAVLDKIAMP--IDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVE 158 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~~--v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~ 158 (514)
|++|.+.+++.|+++.+. .+.+|.+ .+++++++||... ..+++++++++|+..+.+. +. |+.+ +|+|+
T Consensus 131 y~~A~~~~~e~l~~lv~~~~~d~~d~~---~~~rs~i~skq~~-~ed~l~~lVa~ac~si~p~---~~--Fnvd-nIrVc 200 (537)
T KOG0362|consen 131 YETATKEALEILPELVVQSIGDLEDKE---WALRSVIMSKQYG-NEDFLTKLVAKACVSILPL---MS--FNVD-NIRVC 200 (537)
T ss_pred HHHHHHHHHHHhHHHHHHhcccccChH---HHHHHHHHHhhcc-hHHHHHHHHHHHHHhhccc---cc--cccc-ceEEE
Confidence 999999999999987553 2333444 7889999998654 4788999999999999873 33 4444 59999
Q ss_pred EecCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHH
Q 010272 159 KVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQ 238 (514)
Q Consensus 159 ~i~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~ 238 (514)
|+.|+.+++|+++.|++|++.... . ++.-+.+||++++||++...++++.++.+++++++..|.+.|+..++..++.
T Consensus 201 Ki~Gg~l~~S~Vv~GmVfkr~~eG--~-v~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~ 277 (537)
T KOG0362|consen 201 KILGGGLEDSCVVCGMVFKRDPEG--E-VKSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKA 277 (537)
T ss_pred EEecCCcccceeeEEEEeccccCC--c-ccccccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHH
Confidence 999999999999999999998764 2 3777899999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEE
Q 010272 239 ILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFA 318 (514)
Q Consensus 239 i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~ 318 (514)
|+..|+++|++.+.+++++++||++.+|++++--++.+|+|+++..||.+++++..+.+..+|+ |++++..++|+++++
T Consensus 278 Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcrtvGA~~l~rl~~P~~~~lG~-~d~V~~~EiG~~~v~ 356 (537)
T KOG0362|consen 278 IADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCRTVGATALPRLFPPAPEELGY-CDSVSTQEIGDTLVV 356 (537)
T ss_pred HHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHHHHHHcCCccchhccCCCCccccc-cceeeeeecCCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999998
Q ss_pred EEEc-CCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHH
Q 010272 319 FIVD-CKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAA 397 (514)
Q Consensus 319 ~l~~-~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~ 397 (514)
.|.. +..+++.|++|||++...+|+.||++.|++++.+...++++++||+|++|++|+..|.+++...++..|++++.|
T Consensus 357 vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~f 436 (537)
T KOG0362|consen 357 VFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKF 436 (537)
T ss_pred EEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHH
Confidence 7775 446789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCC-ccccccccccccchHHHHHHHHHHHHHHHHHhch
Q 010272 398 AIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTG-AISDMKERKIWDAYNVKAQTFKTAIEAACMLLRI 476 (514)
Q Consensus 398 a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~-~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 476 (514)
++||+.+|++|++|+|++..+++.++...|..| .+.|+|+.-. ...|+.++||||-+.+|+++++.|+|+|+++|++
T Consensus 437 a~Ale~~PktlaEnagl~~~evia~ly~~h~~g--~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~v 514 (537)
T KOG0362|consen 437 AEALEVLPKTLAENAGLAVTEVIAKLYAVHQGG--KNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTV 514 (537)
T ss_pred HHHhccccHhHHHhcCCcHHHHHHHHHHhhcCC--CcceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeeh
Confidence 999999999999999999999999999999744 4578887666 5899999999999999999999999999999999
Q ss_pred hhhhcCCccCC
Q 010272 477 DDIVSGIKKKQ 487 (514)
Q Consensus 477 d~ii~~~~~~~ 487 (514)
|+||+..+..+
T Consensus 515 Dqiimak~agg 525 (537)
T KOG0362|consen 515 DQIIMAKKAGG 525 (537)
T ss_pred hheeEecccCC
Confidence 99999877744
No 40
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-78 Score=582.45 Aligned_cols=468 Identities=29% Similarity=0.537 Sum_probs=446.4
Q ss_pred ceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010272 2 LKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAY 81 (514)
Q Consensus 2 ~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g~ 81 (514)
-||++++.|++.+|+||.+.+.+|.++||-+-++..++..|++..||||||+|+|+++|+++|..++..|+||..|+.||
T Consensus 43 ~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tGDGttS~VlligEllkqa~~~i~eGlhprii~~gf 122 (520)
T KOG0359|consen 43 EKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGF 122 (520)
T ss_pred HHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEEec
Q 010272 82 NKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVP 161 (514)
Q Consensus 82 ~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~i~ 161 (514)
+.|.+.++++|+..+.+++ ++.|..+++|++.+|+...--+.++.++++|+..+.. ....+|+. ++.+++-.
T Consensus 123 e~a~~~~l~~L~k~~~~~~---~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~----~~~~idl~-mveim~mq 194 (520)
T KOG0359|consen 123 EAAKNKALEFLEKVSREVD---RETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRR----QEEPIDLF-MVEIMEMQ 194 (520)
T ss_pred HHHHHHHHhhhhccccchh---HHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeecc----CCCCcchh-HHHhhhhc
Confidence 9999999999997777765 8899999999999999888889999999999998872 22457876 78888888
Q ss_pred CCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHH
Q 010272 162 GGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILK 241 (514)
Q Consensus 162 G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i~~ 241 (514)
.++..|+.+++|++++++..|| .||+.++|++||++|-+|||++++-++.+.++++++.+.+...|++++.+.+.+|++
T Consensus 195 ~~s~~dT~~v~glvLdhg~rHp-dmp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiie 273 (520)
T KOG0359|consen 195 HKSLHDTSLVQGLVLDHGARHP-DMPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIE 273 (520)
T ss_pred cCchhhhHHhhhhhccCCCCCc-ccccchhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999 999999999999999999999999999999999999999999999999999999997
Q ss_pred cCC----cEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEE
Q 010272 242 FKP----DLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFF 317 (514)
Q Consensus 242 ~~~----~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~ 317 (514)
++- =+||++++|||..++.|.+.||++++|.++..|||+..+||+..++++++|+|+.+|+ |+.+++.++|+++|
T Consensus 274 lk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~nsvddLtp~~LG~-aglVye~tlGEEkf 352 (520)
T KOG0359|consen 274 LKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAVNSVDDLTPDYLGY-AGLVYEYTLGEEKF 352 (520)
T ss_pred HhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhhccceecccccCChhhccc-cceeEEeeccceee
Confidence 653 3888999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEEEcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHH
Q 010272 318 AFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAA 397 (514)
Q Consensus 318 ~~l~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~ 397 (514)
+|+++|++++.|||+++||+.+.+.+.|++++|++++++++++++.++||+|++|..++++|+...++.+++.++++++|
T Consensus 353 TFIE~~~~p~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~af 432 (520)
T KOG0359|consen 353 TFIEKCNNPSSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAF 432 (520)
T ss_pred EeeecCCCCcceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred HHhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchh
Q 010272 398 AIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRID 477 (514)
Q Consensus 398 a~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id 477 (514)
++||..+|++|++|+|+|.++.+.+|...|..+ .+|+|+.+|+.++....||||.+.||+++|.++.-+|+.||-+|
T Consensus 433 a~all~ipk~La~nsg~D~qe~l~~l~~e~~~~---~~g~dl~~g~~~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvD 509 (520)
T KOG0359|consen 433 ANALLVIPKTLAKNSGLDEQETLVSLKKEHEVT---LRGLDLFRGEECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVD 509 (520)
T ss_pred HhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhh---hcccccccCCccchhhccccchHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999988654 46999999999999999999999999999999999999999999
Q ss_pred hhhcC
Q 010272 478 DIVSG 482 (514)
Q Consensus 478 ~ii~~ 482 (514)
+|+..
T Consensus 510 Ei~rA 514 (520)
T KOG0359|consen 510 EIIRA 514 (520)
T ss_pred HHHHc
Confidence 99965
No 41
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-62 Score=457.09 Aligned_cols=343 Identities=37% Similarity=0.580 Sum_probs=325.4
Q ss_pred CceeeecCCCCEEEecCHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 1 MLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 1 ~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
||||+..+.|++.+|||| .|++++++...+..++.+.|||||.+++|++.+++++.+++.+|+||..|.+|
T Consensus 53 lDK~l~~pdgditvtndg---------d~~IakLmv~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g 123 (400)
T KOG0357|consen 53 LDKMLVSPDGDITVTNDG---------VHQIAKLIVILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQG 123 (400)
T ss_pred cccccccCCCCceeeecc---------chHHHHHHHHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHh
Confidence 799999999999999999 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEEe
Q 010272 81 YNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKV 160 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~i 160 (514)
|..+...+++.|++++.+++
T Consensus 124 ~e~~~~~av~~l~~i~~~~e------------------------------------------------------------ 143 (400)
T KOG0357|consen 124 YEKAKVVAVEHLDEISDPFE------------------------------------------------------------ 143 (400)
T ss_pred hhhHHHhhhhhhhhhccccc------------------------------------------------------------
Confidence 99999888888776655432
Q ss_pred cCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHH
Q 010272 161 PGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQIL 240 (514)
Q Consensus 161 ~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i~ 240 (514)
+..+++++.
T Consensus 144 -----------------------------------------------------------------------f~emi~~vK 152 (400)
T KOG0357|consen 144 -----------------------------------------------------------------------FEEMIQQIK 152 (400)
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 224678999
Q ss_pred HcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEEC--CeEEE
Q 010272 241 KFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIG--DEFFA 318 (514)
Q Consensus 241 ~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig--~~~~~ 318 (514)
+.|+++++|+|++||+|.++|-+|+..+++||+-.++|.||..||++|++++.+|++..+|+ |+.+++..|| ++++.
T Consensus 153 ~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~-aglVrE~sfgttkdkml 231 (400)
T KOG0357|consen 153 ETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGF-AGLVREISFGTTKDKML 231 (400)
T ss_pred hhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccc-cceEEEEecccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999998 58999
Q ss_pred EEEcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHHH
Q 010272 319 FIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAA 398 (514)
Q Consensus 319 ~l~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a 398 (514)
.+++|++++.+||.+||.+.-+++|.||++|||||++|+++++.++|.|||++|+.||-++.+.+..+++.+|+++++|+
T Consensus 232 viEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa 311 (400)
T KOG0357|consen 232 VIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFA 311 (400)
T ss_pred EEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHhcCCCHHHHHHHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhh
Q 010272 399 IAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDD 478 (514)
Q Consensus 399 ~aL~~ip~~L~~NaG~~~~~~~~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ 478 (514)
+||++||.+|++|||++|++.++++++.+-...++++|+||.-..-.||.+.+++|++..|++.+..|++++.|+|+||+
T Consensus 312 ~ale~ipmalaensgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKidd 391 (400)
T KOG0357|consen 312 DALESIPMALAENSGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDD 391 (400)
T ss_pred HHHhhcchhhhhccCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999887654458999999988899999999999999999999999999999999999
Q ss_pred hhcCCc
Q 010272 479 IVSGIK 484 (514)
Q Consensus 479 ii~~~~ 484 (514)
|+....
T Consensus 392 v~~~~~ 397 (400)
T KOG0357|consen 392 VRKPGE 397 (400)
T ss_pred eecCCC
Confidence 986543
No 42
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-55 Score=438.46 Aligned_cols=428 Identities=24% Similarity=0.314 Sum_probs=370.9
Q ss_pred eecCCCCEEEecCHHHHhhcccccCh----HHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 010272 5 LLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 80 (514)
Q Consensus 5 i~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGTtt~viL~~~Ll~~~~~li~~gi~p~~I~~g 80 (514)
|-..+|.|.|||||+|+++++.+.++ +|+++++.+.+.++.+||||||+++|++++..++.+-+.+|.+|..|.+|
T Consensus 53 ieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrG 132 (550)
T KOG0356|consen 53 IEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRG 132 (550)
T ss_pred cccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhh
Confidence 44568999999999999999998755 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCcHHHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEEe
Q 010272 81 YNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKV 160 (514)
Q Consensus 81 ~~~a~~~~l~~L~~~s~~v~~~~~~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~i 160 (514)
+..+.+.+.+.|++++++++. .+++.+++..+ ++++.++++++.+|+.++++ +|. |.| .
T Consensus 133 i~~av~~vv~~L~k~sk~Vtt--~eeIaqVAtiS------AngD~~ig~li~~a~~kvG~---~GV--------Itv--~ 191 (550)
T KOG0356|consen 133 IMLAVDAVVDELKKMSKPVTT--PEEIAQVATIS------ANGDKEIGNLISDAMKKVGR---KGV--------ITV--K 191 (550)
T ss_pred HHHHHHHHHHHHHHhCCCCCC--HHHHHHHHhhh------cCCcHHHHHHHHHHHHHhCc---CCe--------EEe--e
Confidence 999999999999999999985 78899999865 67899999999999999987 565 777 4
Q ss_pred cCCCCC-CceeEeeEEEecccCCCC------CCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHH
Q 010272 161 PGGQLE-DSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIE 233 (514)
Q Consensus 161 ~G~~~~-ds~li~Giv~~~~~~~~~------~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~ 233 (514)
.|.... +.++++||-|+++|.+|. ....+++||++++.+.+++ +..++.+
T Consensus 192 ~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~-------------~v~~ivp---------- 248 (550)
T KOG0356|consen 192 DGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKIS-------------SVQSIVP---------- 248 (550)
T ss_pred cCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhh-------------HHHHHhH----------
Confidence 577765 557999999999999863 3456789999999887743 4445444
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCC-----------eEEecCChhHHHHHHHHhCCeecc------CCCCCC
Q 010272 234 NLCMQILKFKPDLVITEKGLSDLACHYLSKAGV-----------SAIRRLRKTDNNRIAKACGAVIVN------RPDELQ 296 (514)
Q Consensus 234 ~~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I-----------~~v~~v~~~~l~~i~~~tGa~ii~------~~~~l~ 296 (514)
.++.-.+...++++.+.+++.++|..|.-|+. ..|++.++..+.+++.+||+.++. +++..+
T Consensus 249 -~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~ 327 (550)
T KOG0356|consen 249 -ALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAK 327 (550)
T ss_pred -HHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccccCc
Confidence 44555566778999999999999999988742 345778889999999999998876 455667
Q ss_pred CCccCCccceEEEEEEC------------------------------------CeEEEEEEcCCCCCeeEEEEccCCHhH
Q 010272 297 ESDVGTGAGLFEVKKIG------------------------------------DEFFAFIVDCKDPKACTVLLRGASKDL 340 (514)
Q Consensus 297 ~~~lG~~~~~v~~~~ig------------------------------------~~~~~~l~~~~~~~~~TIll~G~t~~~ 340 (514)
+.++|. +..+...+-. ++|...|. .++++|.++|.++.+
T Consensus 328 ~~dLG~-~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls----~gvavi~vGg~se~E 402 (550)
T KOG0356|consen 328 LEDLGE-VGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLS----GGVAVIKVGGHSEVE 402 (550)
T ss_pred hhhcCc-ceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhc----CCeEEEEecCcchhh
Confidence 788998 8887665420 12333333 479999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCCCCcchHHHHHHHHhhhhhHHHHHHhcCCCHHHHH
Q 010272 341 LNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTM 420 (514)
Q Consensus 341 l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~ 420 (514)
++|++.+++||++++++++++| +|||||++.++|+..|.......+..++.+++++.+||..|..+|+.|||.++..++
T Consensus 403 v~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv 481 (550)
T KOG0356|consen 403 VNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVV 481 (550)
T ss_pred hhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHH
Confidence 9999999999999999999999 999999999999999998766444567788999999999999999999999999999
Q ss_pred HHHHHHHhCCCCceEEEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHhchhhhhcCCccCCCCC
Q 010272 421 TALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPG 490 (514)
Q Consensus 421 ~~l~~~~~~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~~~~ 490 (514)
.+++. ..+|||..+|+++||++.||+||+.|.+.+|..|..+|+++++++.+|...|+++++.
T Consensus 482 ~Kv~~-------~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk~~~~~ 544 (550)
T KOG0356|consen 482 EKVLN-------DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKEEAGN 544 (550)
T ss_pred HHHHh-------hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEeccccccCC
Confidence 99982 2699999999999999999999999999999999999999999999999999888443
No 43
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=1.2e-40 Score=323.62 Aligned_cols=235 Identities=32% Similarity=0.583 Sum_probs=216.1
Q ss_pred cchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEEecCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEec
Q 010272 121 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDS 200 (514)
Q Consensus 121 ~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~i~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~ 200 (514)
+.|.++|++++++|+..+.+...++ +.+|+.++|+|++++||++.||++++|++|++.+.++ .||+.++||||+++++
T Consensus 17 ~~~~~~ls~l~v~Av~~v~~~~~~~-~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~-~m~~~i~n~kIlll~~ 94 (261)
T cd03334 17 ESWLDILLPLVWKAASNVKPDVRAG-DDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHK-RMPSKIKNPRILLLQG 94 (261)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccC-CccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCc-cCCcccCCCcEEEEee
Confidence 4588999999999999986432112 3678776799999999999999999999999999998 8999999999999999
Q ss_pred cCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHH
Q 010272 201 PLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRI 280 (514)
Q Consensus 201 ~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i 280 (514)
+|++++++. +.+++..+++.|++++++++++|++.|+|||+++++|++.+++||.++||++++++++++|+||
T Consensus 95 ~Le~~~~~~-------~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~rI 167 (261)
T cd03334 95 PLEYQRVEN-------KLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERI 167 (261)
T ss_pred eeccccccC-------CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHHH
Confidence 999988764 4578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeeccCC-CCCCCCccCCccceEEEEEECC-----eEEEEEEcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHH
Q 010272 281 AKACGAVIVNRP-DELQESDVGTGAGLFEVKKIGD-----EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSV 354 (514)
Q Consensus 281 ~~~tGa~ii~~~-~~l~~~~lG~~~~~v~~~~ig~-----~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~ 354 (514)
+++|||.+++++ +++++..+|+ |+.|+++++|+ ++|++|++|..++.|||+|||+|++.++|.||+++||+++
T Consensus 168 a~~tGa~ii~~i~~~~~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLRG~t~~~lde~eR~i~Dal~v 246 (261)
T cd03334 168 SRCTGADIISSMDDLLTSPKLGT-CESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVVEFMVFA 246 (261)
T ss_pred HHHhCCEEecChhhhcCcccCcC-cceEEEEEecCcCCCceeEEEEecCCCCceeEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 999999999995 5889999999 99999999996 6999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEE
Q 010272 355 ARNIIKNPKLV 365 (514)
Q Consensus 355 ~~~~l~~g~vv 365 (514)
++++..++.++
T Consensus 247 ~~~~~le~~~~ 257 (261)
T cd03334 247 AYHLKLETSFL 257 (261)
T ss_pred HHHHHHhHHHH
Confidence 99999887443
No 44
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=3.8e-36 Score=284.77 Aligned_cols=208 Identities=46% Similarity=0.765 Sum_probs=195.6
Q ss_pred HHHHHHHHHhhhcccccchhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEEecCCCCCCceeEeeEEEecccCCCC
Q 010272 105 ATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG 184 (514)
Q Consensus 105 ~~l~~v~~t~l~sk~~~~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~i~G~~~~ds~li~Giv~~~~~~~~~ 184 (514)
+.|.++++|+++||+ ++|.+.+++++++|+..++++. + .++. ++|+|++++||++.+|++++|++|++++.++
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~--~--~~~~-~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~- 74 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDN--R--MDDL-GVIKVEKIPGGSLEDSELVVGVVFDKGYASP- 74 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccC--C--CCch-HHEEEEEecCcChhhceeEeeEEEeccccCC-
Confidence 468999999999999 9999999999999999998631 1 2333 4699999999999999999999999999998
Q ss_pred CCcccccCCeEEEEeccCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHc
Q 010272 185 KMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKA 264 (514)
Q Consensus 185 ~~~~~~~n~kIll~~~~L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lVi~~~~i~~~al~~l~~~ 264 (514)
.|++.++||||++++++|++ +|+++++|++.+++||.++
T Consensus 75 ~m~~~~~n~~Ill~~~~le~-----------------------------------------vii~~~~I~~~al~~l~~~ 113 (209)
T cd03333 75 YMPKRLENAKILLLDCPLEY-----------------------------------------VVIAEKGIDDLALHYLAKA 113 (209)
T ss_pred CCCeEcCCCcEEEEeCCeeE-----------------------------------------EEEecCcccHHHHHHHHHC
Confidence 89999999999999999986 9999999999999999999
Q ss_pred CCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCccCCccceEEEEEECCeEEEEEEcCCCCCeeEEEEccCCHhHHHHH
Q 010272 265 GVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEV 344 (514)
Q Consensus 265 ~I~~v~~v~~~~l~~i~~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~ 344 (514)
||++++++++++|+||+++|||.++++++++++..+|+ |+.+++.++|+++|++|++|..+..|||+|||+|+.+++|+
T Consensus 114 ~I~~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~-~~~v~~~~~~~~~~~~~~~~~~~~~~tIllrG~t~~~l~e~ 192 (209)
T cd03333 114 GIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDLGT-AELVEETKIGEEKLTFIEGCKGGKAATILLRGATEVELDEV 192 (209)
T ss_pred CCEEEEeCCHHHHHHHHHHHCCEEecccccCChhhcee-eeEEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHhHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999999989999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 010272 345 ERNLQDAMSVARNIIKN 361 (514)
Q Consensus 345 ~~~i~dal~~~~~~l~~ 361 (514)
||+++||++++++++++
T Consensus 193 kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 193 KRSLHDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999999864
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.91 E-value=1.4e-23 Score=230.99 Aligned_cols=239 Identities=33% Similarity=0.535 Sum_probs=215.5
Q ss_pred chhHHHHHHHHHHhhhccccCCCCCcccCcccceeEEEecCCCCCCceeEeeEEEecccCCCCCCcccccCCeEEEEecc
Q 010272 122 QFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSP 201 (514)
Q Consensus 122 ~~~~~l~~li~~a~~~v~~~~~~g~~~~d~~~~I~i~~i~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~ 201 (514)
.|.+.+..|+.+|...+.++.+.| +.+|+..+|+|+++.||...||+++.|+++.+..+++ .|..++++|||+++.++
T Consensus 332 ~W~~ii~~L~~eaa~~~kp~~~~~-~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k-~M~~~~e~prilll~g~ 409 (1598)
T KOG0230|consen 332 EWLDIITSLCWEAANLLKPDTDSG-GLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHK-RMATKYENPRILLLGGP 409 (1598)
T ss_pred hHHHHHHHHHHHHHHhcCcCcccC-CCcCcccceEEEEecCCCcccceeeeEEEeecchhhh-hhhhhccCCceEEEecc
Confidence 578889999999999998764423 4577888999999999999999999999999999998 99999999999999999
Q ss_pred CccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHH
Q 010272 202 LEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIA 281 (514)
Q Consensus 202 L~~~~~~~~~~~~i~~~~~l~~~~~~E~~~~~~~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~ 281 (514)
|+|.+-..+ ...+..++++|.++++..|.+|...++++++++++|++.|+++|...+|.++-++++.-|+||+
T Consensus 410 leyqrisn~-------lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIs 482 (1598)
T KOG0230|consen 410 LEYQRISNQ-------LSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERIS 482 (1598)
T ss_pred hhhhhhhcc-------ccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHH
Confidence 999865433 2356677778999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeeccCCCCCCCCccCCccceEEEEEEC-----CeEEEEEEcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHH
Q 010272 282 KACGAVIVNRPDELQESDVGTGAGLFEVKKIG-----DEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVAR 356 (514)
Q Consensus 282 ~~tGa~ii~~~~~l~~~~lG~~~~~v~~~~ig-----~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~ 356 (514)
++|||.|+++++.++...+|+ |+.|++.+.. .+.++||++|+....|||++||....++.++|+.+..++.+++
T Consensus 483 R~tga~I~~siDslt~~klg~-C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay 561 (1598)
T KOG0230|consen 483 RCTGADIVPSVDSLTSQKLGY-CELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAAY 561 (1598)
T ss_pred HHhcCceecchhhhhccccCC-CccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 9999887764 4678999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEeCCCH
Q 010272 357 NIIKNPKLVPGGGA 370 (514)
Q Consensus 357 ~~l~~g~vvpGGG~ 370 (514)
+..-+..++.-=|+
T Consensus 562 ~l~LE~SflaDe~a 575 (1598)
T KOG0230|consen 562 HLALETSFLADEGA 575 (1598)
T ss_pred HHHHhhhhhhccCC
Confidence 88766656655555
No 46
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=61.96 E-value=26 Score=27.69 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=31.6
Q ss_pred HHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCC
Q 010272 235 LCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLR 273 (514)
Q Consensus 235 ~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~ 273 (514)
..+.+...++++|++ +.+.+.+...|..+||.++....
T Consensus 45 ~~~~l~~~~v~~li~-~~iG~~~~~~L~~~gI~v~~~~~ 82 (94)
T PF02579_consen 45 IAKFLAEEGVDVLIC-GGIGEGAFRALKEAGIKVYQGAG 82 (94)
T ss_dssp HHHHHHHTTESEEEE-SCSCHHHHHHHHHTTSEEEESTS
T ss_pred HHHHHHHcCCCEEEE-eCCCHHHHHHHHHCCCEEEEcCC
Confidence 334566789999999 57999999999999999998733
No 47
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=54.88 E-value=55 Score=27.88 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=39.1
Q ss_pred HHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCC
Q 010272 235 LCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGA 286 (514)
Q Consensus 235 ~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa 286 (514)
..+.|++.|+++|++ ..+.+-+.++|...||-++.-.+.+.=+.|-....+
T Consensus 57 ~a~~l~~~gvdvvi~-~~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 57 IAELLVDEGVDVVIA-SNIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred HHHHHHHcCCCEEEE-CccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 456788999999999 589999999999999998877664444444444444
No 48
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=53.74 E-value=40 Score=27.12 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=32.3
Q ss_pred HHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCC
Q 010272 235 LCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLR 273 (514)
Q Consensus 235 ~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~ 273 (514)
..+.|...++++|++. ++.+.+...|...||.++....
T Consensus 55 ~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 55 AAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 4456667899999994 7999999999999999987665
No 49
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=43.49 E-value=73 Score=25.45 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=31.5
Q ss_pred HHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCC
Q 010272 236 CMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLR 273 (514)
Q Consensus 236 v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~ 273 (514)
.+.+...++++|++. ++.+.+...|.+.||.++....
T Consensus 54 ~~~l~~~~v~~vi~~-~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 54 ARLLALEGCDAVLVG-GIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHCCCcEEEEc-ccCccHHHHHHHcCCEEEEcCC
Confidence 345667899999996 6999999999999999987665
No 50
>PF00841 Protamine_P2: Sperm histone P2; InterPro: IPR000492 Protamines P1 and P2 form a family of small basic peptides that represent the major sperm proteins in placental mammals. In human and mouse protamine P2 is one of the most abundant sperm proteins. Protamine 2 (PRM2) is a low molecular weight arginine-rich protein which is present in haploid spermatogenic cells of human, mouse and other primates. The protamine P2 gene codes for a P2 precursor, pro-P2 which is later processed by proteolytic cleavages in its N-terminal region to form the mature P2 protamines []. Protamines substitute for histones in the chromatin of sperm during the haploid phase of spermatogenesis. They compact sperm DNA into a highly condensed, stable and inactive complex.; GO: 0003677 DNA binding, 0007283 spermatogenesis, 0000786 nucleosome, 0005634 nucleus
Probab=37.87 E-value=21 Score=27.74 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=22.3
Q ss_pred CCccCCCCCCCCCCCCCccccccccCcccc
Q 010272 482 GIKKKQAPGSGQTPSKPQIETEADADSEQI 511 (514)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (514)
.++..+..+++|+...+.+++||.-.||.+
T Consensus 8 SpSe~p~~g~~qq~~~q~q~qeq~l~pE~v 37 (91)
T PF00841_consen 8 SPSERPHQGYGQQHEGQEQGQEQGLSPEDV 37 (91)
T ss_pred CCccCCCccchhhccccccchhccCCcccc
Confidence 455566667788777778888888888875
No 51
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=36.48 E-value=14 Score=35.99 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=34.8
Q ss_pred EECCeEEEEEEcCCCCCeeEEEEccCCHhHHHHHHHHHHHHHHHHHHHhcCCcEEeCCC
Q 010272 311 KIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGG 369 (514)
Q Consensus 311 ~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG 369 (514)
-||+..++++....+...|.|+-+..--.--.-.|++ -|++++|.+.+.|.++|||-
T Consensus 46 ~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDR--vAl~iir~Aee~GkL~~gg~ 102 (391)
T KOG1481|consen 46 AIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDR--VALYIIRTAEEKGKLVRGGT 102 (391)
T ss_pred hhCCCceEEeeccccccccchhhhhhccCCCCChhhh--hHHHHHHHHHHcCCcccCce
Confidence 3566667777665556666665432111100112333 28999999999999999973
No 52
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=34.11 E-value=1.1e+02 Score=30.16 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=38.8
Q ss_pred HHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEe-cC-C----hhHHHHHHHHhCC
Q 010272 237 MQILKFKPDLVITEKGLSDLACHYLSKAGVSAIR-RL-R----KTDNNRIAKACGA 286 (514)
Q Consensus 237 ~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~-~v-~----~~~l~~i~~~tGa 286 (514)
|.|+..+|+|||.....++...+.|.+.||.++- .. . .+.++.++.++|.
T Consensus 85 E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~ 140 (289)
T TIGR03659 85 EKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGR 140 (289)
T ss_pred HHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCC
Confidence 6799999999999888888888889999986642 11 1 2457888888885
No 53
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=33.36 E-value=65 Score=30.93 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=36.3
Q ss_pred HHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChh
Q 010272 235 LCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKT 275 (514)
Q Consensus 235 ~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~ 275 (514)
++.+.++.|+++|++-..-...+.++..+.||..++.++..
T Consensus 184 mv~Ka~~aGIpvlvS~sapT~lavelA~~~giTLigf~R~~ 224 (237)
T TIGR00129 184 MVQKAARCGVPIIASKSAPTDLAIEVAEESNITLIGFARNG 224 (237)
T ss_pred HHHHHHHcCCCEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 67889999999999999999999999999999998877654
No 54
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=33.15 E-value=1.4e+02 Score=26.96 Aligned_cols=50 Identities=28% Similarity=0.327 Sum_probs=35.0
Q ss_pred HHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEe-c-CC-h----hHHHHHHHHhCC
Q 010272 237 MQILKFKPDLVITEKGLSDLACHYLSKAGVSAIR-R-LR-K----TDNNRIAKACGA 286 (514)
Q Consensus 237 ~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~-~-v~-~----~~l~~i~~~tGa 286 (514)
|.|+..+|+||+......+...+.|.+.|+.++- . -. . +.++.++.++|-
T Consensus 54 E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 54 EKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 6788999999998766666677889999995432 2 21 1 346677777764
No 55
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=31.48 E-value=1.4e+02 Score=28.16 Aligned_cols=51 Identities=25% Similarity=0.339 Sum_probs=36.9
Q ss_pred HHHHHcCCcEEEeCCCCCHH-HHHHHHHcCCeEEecC--C----hhHHHHHHHHhCCe
Q 010272 237 MQILKFKPDLVITEKGLSDL-ACHYLSKAGVSAIRRL--R----KTDNNRIAKACGAV 287 (514)
Q Consensus 237 ~~i~~~~~~lVi~~~~i~~~-al~~l~~~~I~~v~~v--~----~~~l~~i~~~tGa~ 287 (514)
|.|+..+|+|||.....++. ..+.|.+.|+.++-.- . .+.++.|+.++|..
T Consensus 51 E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 51 ERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 68999999999997655444 4788999998655321 1 24578888888863
No 56
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=31.31 E-value=72 Score=31.17 Aligned_cols=42 Identities=10% Similarity=0.125 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChh
Q 010272 234 NLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKT 275 (514)
Q Consensus 234 ~~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~ 275 (514)
+++.+.+..|+++|++-..-...+.++..+.||..++.++..
T Consensus 212 emv~Ka~~aGipvivS~saPT~lAVelA~~~giTLiGf~R~~ 253 (263)
T PRK00724 212 EMVQKAAMAGIPILVAVSAPTSLAVELAEELGLTLVGFARGG 253 (263)
T ss_pred HHHHHHHHcCCcEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 377889999999999999999999999999999998877654
No 57
>PRK07283 hypothetical protein; Provisional
Probab=30.93 E-value=2.1e+02 Score=23.16 Aligned_cols=50 Identities=12% Similarity=0.039 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHH----HHHHHcCCeEEecCChhHHHHHHHHhCC
Q 010272 234 NLCMQILKFKPDLVITEKGLSDLAC----HYLSKAGVSAIRRLRKTDNNRIAKACGA 286 (514)
Q Consensus 234 ~~v~~i~~~~~~lVi~~~~i~~~al----~~l~~~~I~~v~~v~~~~l~~i~~~tGa 286 (514)
+..+.|.+-.+.+||.+.+.++... +.+..++|.++....+++ |..++|-
T Consensus 25 ~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~e---LG~a~Gk 78 (98)
T PRK07283 25 LVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTLE---LSAAVGK 78 (98)
T ss_pred HHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHH---HHHHhCC
Confidence 3456666677899999999998877 555567999887776654 6777773
No 58
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=28.84 E-value=1.5e+02 Score=30.37 Aligned_cols=51 Identities=18% Similarity=0.330 Sum_probs=37.5
Q ss_pred HHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecC---Ch----hHHHHHHHHhCC
Q 010272 236 CMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRL---RK----TDNNRIAKACGA 286 (514)
Q Consensus 236 v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v---~~----~~l~~i~~~tGa 286 (514)
+|.|+.++|+|||......+...+.|.+.||.++..- +. +.++.+++++|-
T Consensus 112 ~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~ 169 (359)
T PRK09534 112 VEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGN 169 (359)
T ss_pred HHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 4789999999999976656667888999999876432 11 445677777775
No 59
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=28.66 E-value=50 Score=34.69 Aligned_cols=41 Identities=29% Similarity=0.467 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhccCC
Q 010272 345 ERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSI 386 (514)
Q Consensus 345 ~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~~~ 386 (514)
++.+.+|+.++|++ +.+-+|.|||+-+-.+...|..++++.
T Consensus 216 ~~eL~~A~~lik~a-k~PlIvaGGGv~YS~A~~~L~af~E~~ 256 (617)
T COG3962 216 ERELADAAALIKSA-KKPLIVAGGGVLYSGAREALRAFAETH 256 (617)
T ss_pred HHHHHHHHHHHHhc-CCCEEEecCceeechHHHHHHHHHHhc
Confidence 35567788888887 557799999998888888888777643
No 60
>COG1526 FdhD Uncharacterized protein required for formate dehydrogenase activity [Energy production and conversion]
Probab=28.21 E-value=82 Score=30.77 Aligned_cols=43 Identities=9% Similarity=0.106 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhH
Q 010272 234 NLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTD 276 (514)
Q Consensus 234 ~~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~ 276 (514)
+++++.+..|++++++-..-...+.+...+.||+.++.++...
T Consensus 212 EmV~Kaa~~Gipil~S~SAPT~Lai~~Ae~~~iTLvgf~R~~~ 254 (266)
T COG1526 212 EMVQKAAMAGIPILASVSAPTSLAIEAAERLGLTLVGFVRGGR 254 (266)
T ss_pred HHHHHHHHhCCcEEEEcccchHHHHHHHHHcCCEEEEEecCCc
Confidence 3778899999999999999999999999999999988777543
No 61
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=25.55 E-value=2.3e+02 Score=23.00 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=27.0
Q ss_pred cCCcEEEeCCCCCHHHHHHHHHcCCeEEecCC
Q 010272 242 FKPDLVITEKGLSDLACHYLSKAGVSAIRRLR 273 (514)
Q Consensus 242 ~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~ 273 (514)
.+|++|++ +++.+.+...|.+.||.++..-.
T Consensus 64 ~~~~vvi~-~~iG~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 64 SDCDAVLC-AKIGDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred cCCcEEee-hhhCccHHHHHHHCCCEEEEecC
Confidence 69999999 68999999999999999985544
No 62
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=24.94 E-value=2.5e+02 Score=21.97 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHH----HHHHcCCeEEecCChhHHHHHHHHhCCe
Q 010272 234 NLCMQILKFKPDLVITEKGLSDLACH----YLSKAGVSAIRRLRKTDNNRIAKACGAV 287 (514)
Q Consensus 234 ~~v~~i~~~~~~lVi~~~~i~~~al~----~l~~~~I~~v~~v~~~~l~~i~~~tGa~ 287 (514)
+.++.|.+-.+.+|+.+.+.++.... ++..++|.++.--++.+ |..++|-.
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~e---LG~a~G~~ 72 (82)
T PRK13602 18 QTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKK---LGKACGIE 72 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHHH---HHHHHCCC
Confidence 35566777788999999999887554 45778998877666644 66777743
No 63
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=24.42 E-value=3e+02 Score=27.44 Aligned_cols=54 Identities=20% Similarity=0.168 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCe
Q 010272 234 NLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAV 287 (514)
Q Consensus 234 ~~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ 287 (514)
+.++.+.+.++++|.+..+.+......+.+.|+.++..+..-+.-+-+.-.|+.
T Consensus 78 ~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD 131 (307)
T TIGR03151 78 ELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGAD 131 (307)
T ss_pred HHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCC
Confidence 356677788999999988888778888999999888777664444444444554
No 64
>PRK07714 hypothetical protein; Provisional
Probab=24.29 E-value=3.3e+02 Score=22.02 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=36.1
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHHHH----HHcCCeEEecCChhHHHHHHHHhCC
Q 010272 234 NLCMQILKFKPDLVITEKGLSDLACHYL----SKAGVSAIRRLRKTDNNRIAKACGA 286 (514)
Q Consensus 234 ~~v~~i~~~~~~lVi~~~~i~~~al~~l----~~~~I~~v~~v~~~~l~~i~~~tGa 286 (514)
+..+.+.+-.+.+||.+.+.++....-+ ..++|.++...++++ |..++|-
T Consensus 25 ~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk~e---LG~a~Gk 78 (100)
T PRK07714 25 LVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQQ---LGHAIGK 78 (100)
T ss_pred HHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCHHH---HHHHhCC
Confidence 4556677777899999999987665544 556898887766654 5666774
No 65
>PF02634 FdhD-NarQ: FdhD/NarQ family; InterPro: IPR003786 Formate dehydrogenase is required for nitrate inducible formate dehydrogenase activity. In Wolinella succinogenes it is a membranous molybdo-enzyme which is involved in phosphorylative electron transport. The functional formate dehydrogenase may be made up of three or four different subunits []. In Escherichia coli, FdhD is required for the formation of active formate dehydrogenases.; GO: 0008863 formate dehydrogenase (NAD+) activity, 0009326 formate dehydrogenase complex; PDB: 2PW9_D.
Probab=24.20 E-value=96 Score=29.70 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCCh
Q 010272 234 NLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRK 274 (514)
Q Consensus 234 ~~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~ 274 (514)
+++.+.++.|+++|++-..-...+.++..+.||..++.++.
T Consensus 183 emv~Ka~~aGipvivS~sapT~~av~~A~~~gitLigf~R~ 223 (236)
T PF02634_consen 183 EMVQKAARAGIPVIVSRSAPTSLAVELARKLGITLIGFARG 223 (236)
T ss_dssp HHHHHHHHHT-SEEEESS-B-HHHHHHHHHHT-EEEEEEET
T ss_pred HHHHHHHHcCCCEEEEcccccHHHHHHHHHhCCEEEEEecC
Confidence 36678888888888888888888888888888888876654
No 66
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=24.14 E-value=2.8e+02 Score=28.00 Aligned_cols=53 Identities=17% Similarity=0.170 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCe
Q 010272 234 NLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAV 287 (514)
Q Consensus 234 ~~v~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~i~~~tGa~ 287 (514)
+.++.+.+.++++|++..+.+.. .+.|.+.||.++..+..-..-+.+.-.|+.
T Consensus 73 ~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD 125 (320)
T cd04743 73 AQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGAR 125 (320)
T ss_pred HHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCC
Confidence 35677778899999999887776 478999999999888765444445555654
No 67
>smart00574 POX domain associated with HOX domains.
Probab=22.90 E-value=1.3e+02 Score=26.23 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHhhcc
Q 010272 339 DLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSS 384 (514)
Q Consensus 339 ~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~E~~l~~~L~~~~~ 384 (514)
.+++|++++.+-...-++.++..=..|+|+|++-.+.+-+|+..+.
T Consensus 84 ~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~Sr 129 (140)
T smart00574 84 SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTISR 129 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 3566777766665555444443322678999988888777775543
No 68
>KOG1593 consensus Asparaginase [Amino acid transport and metabolism]
Probab=22.76 E-value=1.4e+02 Score=28.94 Aligned_cols=36 Identities=33% Similarity=0.530 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhcCC--cEEeCCCHHHHHHHHHHH
Q 010272 345 ERNLQDAMSVARNIIKNP--KLVPGGGATELTVSATLK 380 (514)
Q Consensus 345 ~~~i~dal~~~~~~l~~g--~vvpGGG~~E~~l~~~L~ 380 (514)
-|+++||+++++..++-- .++.|-|++++.-+--+.
T Consensus 105 lrrIkdai~vA~~Vleht~HTlLvGe~At~FA~smGf~ 142 (349)
T KOG1593|consen 105 LRRIKDAIRVARHVLEHTQHTLLVGESATAFANSMGFK 142 (349)
T ss_pred HHHHHHHHHHHHHHHhhhheeeeecccHHHHHHhcCCC
Confidence 478999999999988753 389999999988766554
No 69
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=22.24 E-value=2.3e+02 Score=27.33 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=34.2
Q ss_pred HHHHHcCCcEEEeCCC-CCHHHHHHHHHcCCeEEecC--Ch----hHHHHHHHHhCC
Q 010272 237 MQILKFKPDLVITEKG-LSDLACHYLSKAGVSAIRRL--RK----TDNNRIAKACGA 286 (514)
Q Consensus 237 ~~i~~~~~~lVi~~~~-i~~~al~~l~~~~I~~v~~v--~~----~~l~~i~~~tGa 286 (514)
|.|+.++|+||+...+ ......+.|.+.||.++.-- .. +.++.+++++|.
T Consensus 66 E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~i~~lg~~~g~ 122 (260)
T PRK03379 66 ERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQ 122 (260)
T ss_pred HHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 6789999999998643 34567788899998765432 11 345666666664
No 70
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=21.82 E-value=88 Score=26.72 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEeCCCC--CHHHHHHHHHcCCeEEecC
Q 010272 227 MEEEYIENLCMQILKFKPDLVITEKGL--SDLACHYLSKAGVSAIRRL 272 (514)
Q Consensus 227 ~E~~~~~~~v~~i~~~~~~lVi~~~~i--~~~al~~l~~~~I~~v~~v 272 (514)
...+..++.++++...+++.||++.+. ++..++.+.++++.+++--
T Consensus 65 l~~~~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~ 112 (127)
T PF02603_consen 65 LDEEERKERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRTP 112 (127)
T ss_dssp S-HHHHCCHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEES
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEcC
Confidence 334455677888988998888887764 6889999999999988743
No 71
>PRK06683 hypothetical protein; Provisional
Probab=21.48 E-value=3.9e+02 Score=20.89 Aligned_cols=50 Identities=10% Similarity=-0.008 Sum_probs=36.7
Q ss_pred HHHHHHHcCCcEEEeCCCCCHHHHHH----HHHcCCeEEecCChhHHHHHHHHhCCe
Q 010272 235 LCMQILKFKPDLVITEKGLSDLACHY----LSKAGVSAIRRLRKTDNNRIAKACGAV 287 (514)
Q Consensus 235 ~v~~i~~~~~~lVi~~~~i~~~al~~----l~~~~I~~v~~v~~~~l~~i~~~tGa~ 287 (514)
.++.|.+-.+.+|+.+.+.++...+- +..++|.++..-++.+ |..++|-.
T Consensus 19 v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~~e---LG~A~G~~ 72 (82)
T PRK06683 19 TLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRK---LGKVAGIQ 72 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCHHH---HHHHhCCc
Confidence 45667677899999999999876554 5677998877666544 67777753
No 72
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=21.14 E-value=3.7e+02 Score=22.80 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCcEEEeCCCCCHH-H----HHHHHHcCCeEEecCChhHHHHHHHHhC
Q 010272 233 ENLCMQILKFKPDLVITEKGLSDL-A----CHYLSKAGVSAIRRLRKTDNNRIAKACG 285 (514)
Q Consensus 233 ~~~v~~i~~~~~~lVi~~~~i~~~-a----l~~l~~~~I~~v~~v~~~~l~~i~~~tG 285 (514)
++.++.|.+-.+.+|+.+.++++. . ..++.+++|..+..-++.+ |..++|
T Consensus 36 ~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~e---LG~a~G 90 (122)
T PRK04175 36 NETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKKD---LGKAAG 90 (122)
T ss_pred HHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHH---HHHHhC
Confidence 445566666678899999999763 2 2335667888766665544 555555
No 73
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=20.56 E-value=4.3e+02 Score=20.85 Aligned_cols=51 Identities=10% Similarity=0.021 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCcEEEeCCCCCHHHHH----HHHHcCCeEEecCChhHHHHHHHHhCC
Q 010272 233 ENLCMQILKFKPDLVITEKGLSDLACH----YLSKAGVSAIRRLRKTDNNRIAKACGA 286 (514)
Q Consensus 233 ~~~v~~i~~~~~~lVi~~~~i~~~al~----~l~~~~I~~v~~v~~~~l~~i~~~tGa 286 (514)
++.++.|.+-.+.+|+.++++++.... ++.+.||..+.--++.+| -++||.
T Consensus 19 kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~L---GkAcgi 73 (84)
T PRK13600 19 KETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHAL---GKHVGI 73 (84)
T ss_pred HHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHH---HHHhCC
Confidence 456667777778999999999977654 456779988777666665 445553
No 74
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=20.24 E-value=1.8e+02 Score=23.47 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=27.2
Q ss_pred cCCcEEEeCCCCCHHHHHHHHHcCCeEEecCC
Q 010272 242 FKPDLVITEKGLSDLACHYLSKAGVSAIRRLR 273 (514)
Q Consensus 242 ~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~ 273 (514)
.++++||+ +++.+.+...|.+.||.++....
T Consensus 60 ~~~~vvi~-~~iG~~a~~~L~~~GI~v~~~~~ 90 (102)
T cd00853 60 EDCAILYC-AAIGGPAAARLVRAGIHPIKVPE 90 (102)
T ss_pred CCCcEEEE-hhcChhHHHHHHHcCCEEEEcCC
Confidence 58999988 68999999999999999986554
No 75
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=20.13 E-value=2.5e+02 Score=26.47 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=34.0
Q ss_pred HHHHHcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCC----hhHHHHHHHHhCC
Q 010272 237 MQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLR----KTDNNRIAKACGA 286 (514)
Q Consensus 237 ~~i~~~~~~lVi~~~~i~~~al~~l~~~~I~~v~~v~----~~~l~~i~~~tGa 286 (514)
|.|+.++|+||++.....+ ..+.|.+.+..++-... .+.++.++.++|.
T Consensus 60 E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~ 112 (248)
T cd01138 60 EKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNK 112 (248)
T ss_pred HHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCc
Confidence 6788999999999876655 66777777644432211 3567788888875
No 76
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=20.08 E-value=1.4e+02 Score=26.86 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=26.3
Q ss_pred HHHHHHcCCcEEEeCCCCCHH-HHHHHHHcCCeEE
Q 010272 236 CMQILKFKPDLVITEKGLSDL-ACHYLSKAGVSAI 269 (514)
Q Consensus 236 v~~i~~~~~~lVi~~~~i~~~-al~~l~~~~I~~v 269 (514)
+|.|+..+|+||+......+. ..+.|.+.||.++
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv 96 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQLGIPVL 96 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEE
Confidence 468889999999986655553 7788999998553
Done!