BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010273
         (514 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Xylose
 pdb|4GBZ|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Glucose
 pdb|4GC0|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To
           6-Bromo-6-Deoxy-D-Glucose
          Length = 491

 Score =  196 bits (498), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 146/509 (28%), Positives = 247/509 (48%), Gaps = 85/509 (16%)

Query: 42  KYVLACAFFASLNSVLLGYDVGVMSGAI-----IFIKEDLKITEVQQEVLVGILSIISLF 96
            Y+ +    A+L  +L GYD  V+SG +     +F+     ++E     L+G     +L 
Sbjct: 8   SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQ-NLSESAANSLLGFCVASALI 66

Query: 97  GSLAGGK----TSDVLGRKWTIALAAIVF---QAGAA-----IMTLAPSFAV-------- 136
           G + GG      S+  GR+ ++ +AA++F     G+A       ++ P   V        
Sbjct: 67  GCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYV 126

Query: 137 --LIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFS 194
              +I R++ G+G+G   M++P+YIAE++P+  RG L SF +  I  G LL Y  NY  +
Sbjct: 127 PEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186

Query: 195 RL--PAHIN---WRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSK---- 245
           R    + +N   WR M     +P++   + L+ +PESPRWL+ +G+ ++A  +L K    
Sbjct: 187 RSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246

Query: 246 --TNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQ 303
               ++V+E++  L         D+  K   + +   +         +++ G  +  FQQ
Sbjct: 247 TLATQAVQEIKHSL---------DHGRKTGGRLLMFGV--------GVIVIGVMLSIFQQ 289

Query: 304 ITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTXXXXXXXXXXDKVGRKPLLYVS 363
             GI+  +YY+P +FK  G   +  LL  T+ VG              DK GRKPL  + 
Sbjct: 290 FVGINVVLYYAPEVFKTLGASTDIALL-QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIG 348

Query: 364 TIGMTICXXXXXXXXTFLGNGQLGIAL--------AILSVCGNVAFFSVGIGPVCWVLSS 415
            +GM I            G   LG A         A+LS+   VA F++  GPVCWVL S
Sbjct: 349 ALGMAI------------GMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLS 396

Query: 416 EIFPLRLRAQASALGAVGSRVSSGAIAMSF-------LSVSHAITVGGTFFVFSLISALS 468
           EIFP  +R +A A+      +++  ++ +F         V+H    G +++++  +  L+
Sbjct: 397 EIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAH-FHNGFSYWIYGCMGVLA 455

Query: 469 VAFVYKCVPETKGKSLEQIEMLFQDERER 497
             F++K VPETKGK+LE++E L++ E ++
Sbjct: 456 ALFMWKFVPETKGKTLEELEALWEPETKK 484


>pdb|1PII|A Chain A, Three-Dimensional Structure Of The Bifunctional Enzyme
           Phosphoribosylanthranilate Isomerase:
           Indoleglycerolphosphate Synthase From Escherichia Coli
           Refined At 2.0 Angstroms Resolution
          Length = 452

 Score = 28.9 bits (63), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 59  GYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAA 118
            YD G + G +IF+    +   V+Q   V   + +   G       +DV+ +   ++LAA
Sbjct: 271 AYDAGAIYGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVLSLAA 330

Query: 119 I 119
           +
Sbjct: 331 V 331


>pdb|2KZH|A Chain A, Three-Dimensional Structure Of A Truncated
           Phosphoribosylanthranilate Isomerase (Residues 255-384)
           From Escherichia Coli
          Length = 140

 Score = 28.5 bits (62), Expect = 8.5,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 59  GYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAA 118
            YD G + G +IF+    +   V+Q   V   + +   G       +DV+ +   ++LAA
Sbjct: 18  AYDAGAIYGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVLSLAA 77

Query: 119 I 119
           +
Sbjct: 78  V 78


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,310,351
Number of Sequences: 62578
Number of extensions: 509888
Number of successful extensions: 1164
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1149
Number of HSP's gapped (non-prelim): 8
length of query: 514
length of database: 14,973,337
effective HSP length: 103
effective length of query: 411
effective length of database: 8,527,803
effective search space: 3504927033
effective search space used: 3504927033
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)