Query 010273
Match_columns 514
No_of_seqs 470 out of 1344
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 03:12:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010273.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010273hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 5.3E-47 1.8E-51 375.7 35.5 441 39-495 5-482 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 8.7E-41 3E-45 327.5 13.6 401 41-475 23-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 2.3E-38 7.9E-43 309.0 26.9 371 46-469 26-426 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 3.6E-34 1.2E-38 283.5 22.8 403 67-480 35-476 (491)
5 2gfp_A EMRD, multidrug resista 100.0 2E-35 6.8E-40 281.9 5.1 357 49-460 3-361 (375)
6 2cfq_A Lactose permease; trans 100.0 7.1E-31 2.4E-35 253.5 7.7 372 61-480 22-404 (417)
7 2xut_A Proton/peptide symporte 100.0 3E-29 1E-33 250.3 13.0 153 67-222 34-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.5 5.6E-14 1.9E-18 137.0 12.2 160 61-223 267-433 (451)
9 3o7q_A L-fucose-proton symport 99.4 2.1E-12 7.1E-17 125.3 12.9 153 65-223 277-432 (438)
10 2cfq_A Lactose permease; trans 99.4 4.1E-13 1.4E-17 129.2 6.9 146 79-227 257-404 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.3 4.1E-13 1.4E-17 132.4 3.2 168 299-475 21-196 (491)
12 2gfp_A EMRD, multidrug resista 99.3 2.7E-12 9.3E-17 121.7 7.5 164 307-480 16-179 (375)
13 2xut_A Proton/peptide symporte 99.3 5.4E-12 1.9E-16 125.4 9.1 161 306-474 27-197 (524)
14 4gc0_A D-xylose-proton symport 99.3 5.5E-11 1.9E-15 117.1 14.3 165 62-227 293-467 (491)
15 2g9p_A Antimicrobial peptide l 58.0 5.5 0.00019 18.9 1.4 14 100-113 2-15 (26)
16 2dw3_A Intrinsic membrane prot 21.7 1.2E+02 0.004 20.0 3.6 30 453-482 31-60 (77)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=5.3e-47 Score=375.69 Aligned_cols=441 Identities=30% Similarity=0.549 Sum_probs=340.1
Q ss_pred CCchhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhcccc--------ChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q 010273 39 STRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKI--------TEVQQEVLVGILSIISLFGSLAGGKTSDVLGR 110 (514)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr 110 (514)
.++++.+.+.++++++.++.++|.+.++.++|.+.++++. +..+.|++.+++.+|..++++++|+++||+||
T Consensus 5 ~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GR 84 (491)
T 4gc0_A 5 YNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGR 84 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCH
T ss_pred cChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456677777788889999999999999999999887743 34678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH------------------hhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccc
Q 010273 111 KWTIALAAIVFQAGAAIMT------------------LAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLT 172 (514)
Q Consensus 111 r~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 172 (514)
|++++++.+++.+++++++ +++|+++++++|+++|++.|+..+....+++|+.|+++|++..
T Consensus 85 k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~ 164 (491)
T 4gc0_A 85 RDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV 164 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence 9999999999999999998 4789999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhcccCC-----CCccchhhHhhchHHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhc
Q 010273 173 SFPEIFINLGILLGYISNYAFSRLP-----AHINWRVMLGVGILPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTN 247 (514)
Q Consensus 173 ~~~~~~~~~g~~~g~~~~~~~~~~~-----~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
++.+.+..+|.++++.++..+.... ...+||+.+.+..++.++..+..+++||+|+|+..+++.|++.+.+++..
T Consensus 165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~ 244 (491)
T 4gc0_A 165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIM 244 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhc
Confidence 9999999999999988887654322 23578889999999988888889999999999999999999999887765
Q ss_pred cChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCch
Q 010273 248 ESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNN 327 (514)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (514)
.+....++..+.... ..+.++.......++ +++.........+....+.+.+.+|.|.+.+..+....
T Consensus 245 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 312 (491)
T 4gc0_A 245 GNTLATQAVQEIKHS------LDHGRKTGGRLLMFG-----VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTD- 312 (491)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHTTHHHHSC-----CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHH-
T ss_pred CCchhHHHHHHHHHH------HHhhhhhhhHHHHhc-----ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCcc-
Confidence 443332222111110 011111111112222 12333444455556666677777888888877765544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccc
Q 010273 328 ELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIG 407 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (514)
.........++..+++.++++++.||+|||+.+..+.....++.+.+......... . ...+.........+..+..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~ 388 (491)
T 4gc0_A 313 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP--G--IVALLSMLFYVAAFAMSWG 388 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC--H--HHHHHHHHHHHHHHHTTTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc--h--HHHHHHHHHHHHHHHhHHH
Confidence 34445566788899999999999999999999998888887777666554432211 1 2223333334445556667
Q ss_pred cccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhcCcEehhhHHHHHHHHHHhhhccccCCC
Q 010273 408 PVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSH------AITVGGTFFVFSLISALSVAFVYKCVPETKG 481 (514)
Q Consensus 408 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (514)
|+.+.+.+|.+|++.|+++.|+.+..+++++++++.+.+.+.+ ..+....+++++++++++.++.++++||+|+
T Consensus 389 ~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 389 PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 8888999999999999999999999999999999888776543 3345567888999999999988999999999
Q ss_pred CCHHHHHHHhhhcc
Q 010273 482 KSLEQIEMLFQDER 495 (514)
Q Consensus 482 ~~~~~~~~~~~~~~ 495 (514)
|+.+|+++..+++.
T Consensus 469 ~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 469 KTLEELEALWEPET 482 (491)
T ss_dssp CCHHHHGGGTC---
T ss_pred CCHHHHHHHhCCCC
Confidence 99998877665443
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=8.7e-41 Score=327.49 Aligned_cols=401 Identities=15% Similarity=0.074 Sum_probs=296.5
Q ss_pred chhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHH
Q 010273 41 RKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIV 120 (514)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~ 120 (514)
++.++..+..+++..+..+++...+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 344566677777788888889999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----hhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccC
Q 010273 121 FQAGAAIMTL----APSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRL 196 (514)
Q Consensus 121 ~~~~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 196 (514)
.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-- 179 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM-- 179 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH--
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999999998743
Q ss_pred CCCcc-chhhHhhchHHHHHHHH-HHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhH
Q 010273 197 PAHIN-WRVMLGVGILPSVFIAL-ALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEE 274 (514)
Q Consensus 197 ~~~~~-Wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (514)
+..+ ||+.|++.+++.++..+ .++++||+|+....+++.++ +.. .+.+. .. ..+++...+
T Consensus 180 -~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--~~~~~---~~---~~~~~~~~~ 241 (451)
T 1pw4_A 180 -AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY---------KND--YPDDY---NE---KAEQELTAK 241 (451)
T ss_dssp -HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT---------CCC---------------------CCT
T ss_pred -HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh---------ccc--ccccc---hh---hhhcccccc
Confidence 3467 99999998877766554 46778888753211110000 000 00000 00 000001111
Q ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010273 275 KAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKV 354 (514)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 354 (514)
+...++.++ ++.++...+..+...........+.|.++++..+.+....+.......++.+++.++.|++.||+
T Consensus 242 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 315 (451)
T 1pw4_A 242 QIFMQYVLP------NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 315 (451)
T ss_dssp HHHHHHTSS------CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111333333 23344444444444555566778899999886556666677777778899999999999999999
Q ss_pred --CCchhhhhhhHHHH-HHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHH
Q 010273 355 --GRKPLLYVSTIGMT-ICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGA 431 (514)
Q Consensus 355 --~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 431 (514)
+||+.+..+..+.. ++.+++... .+... +. ........+++..+..+....+..|.+|++.|++++|+.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 388 (451)
T 1pw4_A 316 FRGNRGATGVFFMTLVTIATIVYWMN----PAGNP--TV-DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTG 388 (451)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHTTSC----CTTCH--HH-HHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHh----cccCH--HH-HHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHH
Confidence 99888776655544 333332211 11111 22 2222222333333444566688899999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhc
Q 010273 432 VGSRV-SSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKC 475 (514)
Q Consensus 432 ~~~~~-g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 475 (514)
...++ |..++|.+.|.+.+..|+...+++.+++.+++.++.+..
T Consensus 389 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 389 LFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999898888888888777777665443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=2.3e-38 Score=309.00 Aligned_cols=371 Identities=11% Similarity=0.070 Sum_probs=278.9
Q ss_pred HHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHH
Q 010273 46 ACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGA 125 (514)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 125 (514)
..+.++++..+..+++....++..|.+.+++|++..+.|++.+.+.+++.++++++|+++||+|||++++.+.++++++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 105 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 33445556667777788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH---HhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcc-cCCCC--
Q 010273 126 AIM---TLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFS-RLPAH-- 199 (514)
Q Consensus 126 ~~~---~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~~~-- 199 (514)
+++ +++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+. .....
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 185 (438)
T 3o7q_A 106 ALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS 185 (438)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCC
T ss_pred HHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999 888999999999999999999999999999999999999999999999999999999999998865 32111
Q ss_pred --------------------ccchhhHhhchHHHHHHHHHHhh--ccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHH
Q 010273 200 --------------------INWRVMLGVGILPSVFIALALFV--IPESPRWLVMQGRIDEARLVLSKTNESVKEVEERL 257 (514)
Q Consensus 200 --------------------~~Wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (514)
.+||+.|++.++..++..+..++ .||+++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---------------------------- 237 (438)
T 3o7q_A 186 QDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---------------------------- 237 (438)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT----------------------------
T ss_pred ccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc----------------------------
Confidence 01999998866665555544333 4555420
Q ss_pred HHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHH-hhhcCCCCchHHHHHHHHH
Q 010273 258 AEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTI-FKGAGIKGNNELLAATVAV 336 (514)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 336 (514)
..+++++++.+..+++.++.+. ++...+..+...........+.|.| +++..+.+....+......
T Consensus 238 -------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 304 (438)
T 3o7q_A 238 -------NHSDAKQGSFSASLSRLARIRH------WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGT 304 (438)
T ss_dssp -------CCCCSSTTSHHHHHHHHTTCSH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred -------ccccccccchhhhHHHHHhChH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHH
Confidence 0011122233445566666333 2222222233333344566788988 8887566666777777778
Q ss_pred HHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeee
Q 010273 337 GFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSE 416 (514)
Q Consensus 337 ~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (514)
.++.+++.++.|++.||++||+.+..+.++..++.+++..... ....+.. ...+++.....|..+++..|
T Consensus 305 ~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~g~~~~~~~~~~~~~~~~ 374 (438)
T 3o7q_A 305 MVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG---------HVGLIAL-TLCSAFMSIQYPTIFSLGIK 374 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH---------HHHHHHH-HHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC---------cHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999988887777666555443221 1111111 22333344455777788888
Q ss_pred ccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCcEehhhHHHHHHHH
Q 010273 417 IFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAIT-VGGTFFVFSLISALSV 469 (514)
Q Consensus 417 ~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~ 469 (514)
.+|++ ++.+.++.. ...+++.++|.+.|.+.+..| ++..+.+.+++.++..
T Consensus 375 ~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 375 NLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp SCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred hcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 88866 888888877 677999999999999999998 8877776655544433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=3.6e-34 Score=283.52 Aligned_cols=403 Identities=13% Similarity=0.039 Sum_probs=254.0
Q ss_pred hhHhhhhhc-----cccChhHHHHHHHHHHHHHHHHHHhHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 010273 67 GAIIFIKED-----LKITEVQQEVLVGILSIISLFGSLAGGKTSDV-LGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIG 140 (514)
Q Consensus 67 ~~~~~i~~~-----~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (514)
...+++.++ +|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++
T Consensus 35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (491)
T 4aps_A 35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGS 114 (491)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHH
T ss_pred HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344455555 99999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHhccccccccchhhhhhhcccccc--ccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHH
Q 010273 141 RLLAGVGIGFGVMIAPLYIAEISPSIA--RGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIAL 218 (514)
Q Consensus 141 r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~ 218 (514)
|+++|++.+...+...+++.|++|+++ |+.++++++.+.++|..++|.+++.+. ++.+||+.|++.++..++..+
T Consensus 115 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~g~~~~f~~~~~~~~~~~~ 191 (491)
T 4aps_A 115 IILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ---EAAGYHVAFSLAAIGMFIGLL 191 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 777888899999999999999999854 457999999997766665555
Q ss_pred HHhhc-cCCh----hHHHHcCCHHHHHHHHHH-----------------hccChhhHHHHHHHH---HHHhccchhhhhh
Q 010273 219 ALFVI-PESP----RWLVMQGRIDEARLVLSK-----------------TNESVKEVEERLAEI---QVAAGSDNAEKNE 273 (514)
Q Consensus 219 ~~~~~-~e~~----~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 273 (514)
..++. ++.. +....+.+.++.++..+. .+....+........ ...........+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (491)
T 4aps_A 192 VYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISS 271 (491)
T ss_dssp HHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhc
Confidence 43322 2111 000011122333222211 000000000000000 0000000000000
Q ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010273 274 EKAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDK 353 (514)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 353 (514)
......+ + ++..+ .+......+.....+.....+.|.+.++....+....+.......+..+++.++.+++.||
T Consensus 272 ~~~~~~~--~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 345 (491)
T 4aps_A 272 VKVTSTE--H-LRVVS---YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA 345 (491)
T ss_dssp -------------CTT---HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHH--H-HHHHH---HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH
Confidence 0000000 0 00011 1111122222222233445567777776544442334445555778888889999999999
Q ss_pred cCCchhhh-----hhhHHHHHHHHHHHHHHHHhcCc-chhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHH
Q 010273 354 VGRKPLLY-----VSTIGMTICLLSLSLSLTFLGNG-QLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQAS 427 (514)
Q Consensus 354 ~~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 427 (514)
++||+... .+..+..++..++.......... ....+. ........+.......+..+.+..|.+|++.|+++.
T Consensus 346 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~ 424 (491)
T 4aps_A 346 WKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLW-LVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMM 424 (491)
T ss_dssp TTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHH-HHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSST
T ss_pred HhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHH-HHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHH
Confidence 99987655 55555555555544433221111 111122 222222233333344567778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhccccCC
Q 010273 428 ALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETK 480 (514)
Q Consensus 428 g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (514)
|+.+...++|..+++.+.+.+.+. ++...+.+.+++++++.++.+...++.+
T Consensus 425 g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 425 SMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998877654 5667778888777777777666555444
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=2e-35 Score=281.92 Aligned_cols=357 Identities=16% Similarity=0.086 Sum_probs=263.6
Q ss_pred HHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 010273 49 FFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIM 128 (514)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 128 (514)
.++++..+..+++...+.+..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 34455566777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhh
Q 010273 129 TLAPSFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGV 208 (514)
Q Consensus 129 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~ 208 (514)
+++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++. +.++.+||+.|++
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGL---LDTMWNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHH---SSCHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHhccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 5556799999999
Q ss_pred chHHHHHHHH-HHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHH
Q 010273 209 GILPSVFIAL-ALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPA 287 (514)
Q Consensus 209 ~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (514)
.++..++..+ ..+++||+++.. +++++.+..+ ++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~------~~~ 195 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPVD--------------------------------------APRTRLLTSY------KTL 195 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTTT--------------------------------------CCCCCTTTCS------THH
T ss_pred HHHHHHHHHHHHHHHCcccCCCC--------------------------------------cccccHHHHH------HHH
Confidence 8877777666 466678876410 0000001111 123
Q ss_pred HHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHH-
Q 010273 288 VRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIG- 366 (514)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~- 366 (514)
++++.++...+..+...........+.|.++++..+.+....+.......++.+++.++.+++.||++++ ...+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~ 273 (375)
T 2gfp_A 196 FGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICC 273 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 3344444444444444445555667778887774444555667777778888899999999999988762 2222222
Q ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010273 367 MTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFL 446 (514)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 446 (514)
..++...+....... ...+. ........++......+....+..|..| ++|+++.|+.+...++|..++|.+.+
T Consensus 274 ~~~~~~~~~~~~~~~----~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g 347 (375)
T 2gfp_A 274 LLAGLLMWIPDWFGV----MNVWT-LLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSA 347 (375)
T ss_dssp HHTSSSSSHHHHHHH----HHHHH-HHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCT
T ss_pred HHHHHHHHHHhhhcc----ccHHH-HHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 222222111111000 00111 1112222223333445677788889988 89999999999999999999999999
Q ss_pred HHHhhhhcCcEehh
Q 010273 447 SVSHAITVGGTFFV 460 (514)
Q Consensus 447 ~~~~~~g~~~~~~~ 460 (514)
.+.+..++...+.+
T Consensus 348 ~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 348 MLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhcCCcccHHHHH
Confidence 99887776554444
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.96 E-value=7.1e-31 Score=253.47 Aligned_cols=372 Identities=13% Similarity=0.117 Sum_probs=230.9
Q ss_pred hhhhcchhHh-hhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHH---HHHHhhhhH-H
Q 010273 61 DVGVMSGAII-FIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGA---AIMTLAPSF-A 135 (514)
Q Consensus 61 ~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~---~~~~~~~~~-~ 135 (514)
......+.+| ++++++|+|+.+.|++.+.+.+++.++++++|+++||+|||++++.+..+++++. ....+++.. .
T Consensus 22 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (417)
T 2cfq_A 22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101 (417)
T ss_dssp HHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566 4677899999999999999999999999999999999999999999988876532 222333322 1
Q ss_pred HHHHHHHHHhccccccccchhhhhhhcccc--ccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHH
Q 010273 136 VLIIGRLLAGVGIGFGVMIAPLYIAEISPS--IARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPS 213 (514)
Q Consensus 136 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~ 213 (514)
.++..+++.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++.+.+ .+||+.|++.++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCA 177 (417)
T ss_dssp TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHH
Confidence 245567777777766665555666666544 355767777777778888899988887543 48999999877666
Q ss_pred HHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHHHHHHH
Q 010273 214 VFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAVRRMLI 293 (514)
Q Consensus 214 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (514)
++..+..++.+|+++. +.+.+ ++. +.++++.....+++.+++ +......
T Consensus 178 ~~~~~~~~~~~~~~~~---~~~~~-----------~~~---------------~~~~~~~~~~~~~~~~~~-~~~~~~~- 226 (417)
T 2cfq_A 178 LILAVLLFFAKTDAPS---SATVA-----------NAV---------------GANHSAFSLKLALELFRQ-PKLWFLS- 226 (417)
T ss_dssp TTHHHHSCSSCCCCSC---SSCSS-----------SSS---------------SSCCCCCCHHHHHHHTTC-HHHHHHH-
T ss_pred HHHHHHHHHcCccccc---ccccc-----------ccc---------------ccccccccHHHHHHHhcC-CchhhHH-
Confidence 5555554454443310 00000 000 000001111233445542 2221111
Q ss_pred HHHHHHHHhhhccceeeccchHHHhhhcCCC---CchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHH
Q 010273 294 TGCGIQCFQQITGIDATVYYSPTIFKGAGIK---GNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTIC 370 (514)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~ 370 (514)
+..+.....+.....+.|.|+.+.... +....+.......++.+++.++.++++||++||+.+..+..+..++
T Consensus 227 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~ 302 (417)
T 2cfq_A 227 ----LYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVR 302 (417)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 111111111222233466666554321 1233345555566778889999999999999999887776665554
Q ss_pred HHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 010273 371 LLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALG-AVGSRVSSGAIAMSFLSVS 449 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~~~~~ 449 (514)
...+... + .. +.... .....+.......+..+.+..|.+|++.|+++.|+. +....+|+.++|.+.|.+.
T Consensus 303 ~~~~~~~-----~-~~--~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~ 373 (417)
T 2cfq_A 303 IIGSSFA-----T-SA--LEVVI-LKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp HHHHTTC-----C-SH--HHHHH-HTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred HHHHHHh-----c-cH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence 4333211 1 11 11111 111111111122233457889999999999999994 8888999999999999999
Q ss_pred hhhhcCcEehhhHHHHHHHHHHhhhccccCC
Q 010273 450 HAITVGGTFFVFSLISALSVAFVYKCVPETK 480 (514)
Q Consensus 450 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (514)
+..|+...|.+.+++.+++.++.+...+|++
T Consensus 374 ~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 374 ESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9888877888888887777776555555544
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=3e-29 Score=250.27 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=136.5
Q ss_pred hhHhhhhhccc------cChhHHHHHHHHHHHHHHHHHHhHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHhhh-hHHHHH
Q 010273 67 GAIIFIKEDLK------ITEVQQEVLVGILSIISLFGSLAGGKTSDVL-GRKWTIALAAIVFQAGAAIMTLAP-SFAVLI 138 (514)
Q Consensus 67 ~~~~~i~~~~~------~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 138 (514)
...+++.+++| .+..+.+++.+++.++..++++++|+++||+ |||+++..+.++.+++.+++++++ +++.++
T Consensus 34 ~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (524)
T 2xut_A 34 ILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFY 113 (524)
T ss_dssp HHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 34446788899 9999999999999999999999999999999 999999999999999999999999 999999
Q ss_pred HHHHHHhccccccccchhhhhhhccccccccccchh---hHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHH
Q 010273 139 IGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSF---PEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVF 215 (514)
Q Consensus 139 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~ 215 (514)
+.|++.|++.+...+...+++.|++|+++|+++.+. ...+.++|..++|.+++.+. +..+||+.|++.++..++
T Consensus 114 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~---~~~g~~~~f~~~~~~~~~ 190 (524)
T 2xut_A 114 TGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL---KNFGAAVAFGIPGVLMFV 190 (524)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH---HTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876666 88999999999999998854 356999999998777666
Q ss_pred HHHHHhh
Q 010273 216 IALALFV 222 (514)
Q Consensus 216 ~~~~~~~ 222 (514)
..+..++
T Consensus 191 ~~~~~~~ 197 (524)
T 2xut_A 191 ATVFFWL 197 (524)
T ss_dssp HHHHHHS
T ss_pred HHHHHHH
Confidence 5555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.51 E-value=5.6e-14 Score=136.97 Aligned_cols=160 Identities=18% Similarity=0.095 Sum_probs=133.7
Q ss_pred hhhhcchhHhhhh-hccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhh--hhHHHHHHHHHHHH-HHHHHHHhh--hhH
Q 010273 61 DVGVMSGAIIFIK-EDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVL--GRKWTIALAAIVFQ-AGAAIMTLA--PSF 134 (514)
Q Consensus 61 ~~~~~~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~~~~~~~~~-~~~~~~~~~--~~~ 134 (514)
.........|.+. +.+|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.
T Consensus 267 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (451)
T 1pw4_A 267 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNP 346 (451)
T ss_dssp HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCH
Confidence 3444455666544 45999999999999999999999999999999999 99999988887777 666666666 367
Q ss_pred HHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHH-HHHHHHHHhhhcccCCCCccchhhHhhchHHH
Q 010273 135 AVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINL-GILLGYISNYAFSRLPAHINWRVMLGVGILPS 213 (514)
Q Consensus 135 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~ 213 (514)
+.+.+..++.|++.+...+....++.|.+|+++|++++++......+ |..++|.+.+.+. +..||+..|++.++..
T Consensus 347 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~---~~~g~~~~~~~~~~~~ 423 (451)
T 1pw4_A 347 TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV---DFFGWDGGFMVMIGGS 423 (451)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCcHHHHHHHHHHH
Confidence 78888889999998888888899999999999999999999999999 9999999998844 4568999999987777
Q ss_pred HHHHHHHhhc
Q 010273 214 VFIALALFVI 223 (514)
Q Consensus 214 ~~~~~~~~~~ 223 (514)
++..+..+++
T Consensus 424 ~~~~~~~~~~ 433 (451)
T 1pw4_A 424 ILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7666655443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.39 E-value=2.1e-12 Score=125.31 Aligned_cols=153 Identities=12% Similarity=-0.089 Sum_probs=123.7
Q ss_pred cchhHh-h-hhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 010273 65 MSGAII-F-IKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRL 142 (514)
Q Consensus 65 ~~~~~~-~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 142 (514)
.....| + +++.+|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.++..+.++.+.++.. +
T Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 355 (438)
T 3o7q_A 277 CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-T 355 (438)
T ss_dssp HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-H
T ss_pred HHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-H
Confidence 333444 4 556679999999999999999999999999999999999999999999999999999988887765554 8
Q ss_pred HHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCcc-chhhHhhchHHHHHHHHHHh
Q 010273 143 LAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHIN-WRVMLGVGILPSVFIALALF 221 (514)
Q Consensus 143 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-Wr~~f~~~~~~~~~~~~~~~ 221 (514)
+.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.+.+. +..| ++..|++.++..++..+..+
T Consensus 356 ~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~---~~~g~~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3o7q_A 356 LCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVS---DAAGNIPTAELIPALCFAVIFIFAR 430 (438)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHH---HHHTSSGGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHH---HHhcchHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999865 888888776 55689999999998854 4556 99988876655554444433
Q ss_pred hc
Q 010273 222 VI 223 (514)
Q Consensus 222 ~~ 223 (514)
+.
T Consensus 431 ~~ 432 (438)
T 3o7q_A 431 FR 432 (438)
T ss_dssp TC
T ss_pred HH
Confidence 33
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.37 E-value=4.1e-13 Score=129.17 Aligned_cols=146 Identities=12% Similarity=0.034 Sum_probs=121.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccchhhh
Q 010273 79 TEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVGIGFGVMIAPLY 158 (514)
Q Consensus 79 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~ 158 (514)
+....++..+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888888999999999999999999999999999998888888888888888888888888877677777889
Q ss_pred hhhccccccccccchh-hHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHH-HhhccCCh
Q 010273 159 IAEISPSIARGSLTSF-PEIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALA-LFVIPESP 227 (514)
Q Consensus 159 i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~-~~~~~e~~ 227 (514)
+.|.+|++.|+++.++ ++....+|..++|.+++.+. +..|++..|.+.++..++..+. +++.||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~---~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY---ESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH---HHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 47888899999999998843 3467888888877776666555 44566654
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.32 E-value=4.1e-13 Score=132.37 Aligned_cols=168 Identities=8% Similarity=-0.036 Sum_probs=122.0
Q ss_pred HHHhhhccceeeccchHHHhhhc-----CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhhhhhHHHHHHHH
Q 010273 299 QCFQQITGIDATVYYSPTIFKGA-----GIKGNNELLAATVAVGFTKTIFILIAIILIDK-VGRKPLLYVSTIGMTICLL 372 (514)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~r~~~~~~~~~~~~~~~ 372 (514)
..+.....++....+.+.|+++. .+.+....++......++..++.++.|+++|| +|||+.+..+.++..++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (491)
T 4aps_A 21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHI 100 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 33333444455556777777764 55566677777788899999999999999999 8999999998888777766
Q ss_pred HHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010273 373 SLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRL--RAQASALGAVGSRVSSGAIAMSFLSVSH 450 (514)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~~~~~~ 450 (514)
+..... +. +. ++......+.......+...+++.|.+|++. |+.+.++.+...++|..++|.+.+.+.+
T Consensus 101 ~~~~~~------~~--~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 171 (491)
T 4aps_A 101 VLALPF------GA--SA-LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE 171 (491)
T ss_dssp HHHSCC------ST--TH-HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhh------hH--HH-HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 654321 11 11 1122222333333445677788999999888 7888888999999999999999999999
Q ss_pred hhhcCcEehhhHHHHHHHHHHhhhc
Q 010273 451 AITVGGTFFVFSLISALSVAFVYKC 475 (514)
Q Consensus 451 ~~g~~~~~~~~~~~~~~~~~~~~~~ 475 (514)
..||+..|++.++..+++.+...+.
T Consensus 172 ~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 172 AAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998888777666666554433
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.30 E-value=2.7e-12 Score=121.71 Aligned_cols=164 Identities=13% Similarity=0.096 Sum_probs=124.1
Q ss_pred ceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHHhcCcch
Q 010273 307 IDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTIGMTICLLSLSLSLTFLGNGQL 386 (514)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (514)
........|.+.++.+.+. ...++......++..++.++.|+++||+|||+.+..+..+..++.........
T Consensus 16 ~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~------- 87 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVRE-GAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSS------- 87 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTT-HHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHhhhhHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc-------
Confidence 3344456677776666544 45666677788999999999999999999999999998888888777766543
Q ss_pred hhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcEehhhHHHHH
Q 010273 387 GIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGSRVSSGAIAMSFLSVSHAITVGGTFFVFSLISA 466 (514)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 466 (514)
...++......+.......+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+|+..+.+.+++.+
T Consensus 88 --~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 165 (375)
T 2gfp_A 88 --LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCA 165 (375)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 222223333334444445567778889999999999999999999999999999999999988899888888887777
Q ss_pred HHHHHhhhccccCC
Q 010273 467 LSVAFVYKCVPETK 480 (514)
Q Consensus 467 ~~~~~~~~~~~~~~ 480 (514)
+..+...+..||++
T Consensus 166 ~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 166 GVTFSMARWMPETR 179 (375)
T ss_dssp HHHCCCCCSSCCCS
T ss_pred HHHHHHHHHCcccC
Confidence 76665555566554
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.28 E-value=5.4e-12 Score=125.40 Aligned_cols=161 Identities=11% Similarity=0.004 Sum_probs=116.6
Q ss_pred cceeeccchHHHhhhcCC------CCchHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhhhhhhHHHHHHHHHHHHHH
Q 010273 306 GIDATVYYSPTIFKGAGI------KGNNELLAATVAVGFTKTIFILIAIILIDKV-GRKPLLYVSTIGMTICLLSLSLSL 378 (514)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~r~~~~~~~~~~~~~~~~~~~~~ 378 (514)
.++....+.+.++.+..+ .+....++......++..++.++.|+++||+ |||+.+..+.++..++.++.....
T Consensus 27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~ 106 (524)
T 2xut_A 27 SFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE 106 (524)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc
Confidence 344455677777765444 4555666777778899999999999999999 999999888887777766654432
Q ss_pred HHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhcC
Q 010273 379 TFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASAL---GAVGSRVSSGAIAMSFLSVSHAITVG 455 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~~~~~~~~g~~ 455 (514)
.+ ...++......+.......+...+++.|.+|++.|+.+.++ .+...++|..++|.+.+.+.+..+|+
T Consensus 107 -----~~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~ 178 (524)
T 2xut_A 107 -----HS---VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAA 178 (524)
T ss_dssp -----SC---HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHH
T ss_pred -----cc---HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 01 11222223333444445557777889999999999776666 88899999999999999999888888
Q ss_pred cEehhhHHHHHHHHHHhhh
Q 010273 456 GTFFVFSLISALSVAFVYK 474 (514)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~ 474 (514)
..|++.+++.++..+....
T Consensus 179 ~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 179 VAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888877776666555433
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.25 E-value=5.5e-11 Score=117.08 Aligned_cols=165 Identities=17% Similarity=0.059 Sum_probs=118.5
Q ss_pred hhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh-----hHHH
Q 010273 62 VGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAP-----SFAV 136 (514)
Q Consensus 62 ~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-----~~~~ 136 (514)
...+....+.+.++.+.+............+...++.++.+++.||+|||+.++.+....+++.+..+... +...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 372 (491)
T 4gc0_A 293 INVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA 372 (491)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred hhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHH
Confidence 33444566778888888888888888888899999999999999999999999999998888877665432 1222
Q ss_pred HHHH-HHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhcccC---CCCccchhhHhhchHH
Q 010273 137 LIIG-RLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRL---PAHINWRVMLGVGILP 212 (514)
Q Consensus 137 ~~~~-r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~---~~~~~Wr~~f~~~~~~ 212 (514)
++.. -+..+.+. ...+....+.+|.+|.+.|++++++......+|..+++.+.+.+... ....++.+.|++.+.+
T Consensus 373 ~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~ 451 (491)
T 4gc0_A 373 LLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM 451 (491)
T ss_dssp HHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 2222 22222222 24467788999999999999999999999999988887666553210 1123556677776666
Q ss_pred HHHHHH-HHhhccCCh
Q 010273 213 SVFIAL-ALFVIPESP 227 (514)
Q Consensus 213 ~~~~~~-~~~~~~e~~ 227 (514)
+++..+ .++++||+.
T Consensus 452 ~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 452 GVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHheecCCC
Confidence 665555 478899996
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=57.96 E-value=5.5 Score=18.89 Aligned_cols=14 Identities=36% Similarity=0.273 Sum_probs=11.2
Q ss_pred hHHHhhhhhhhHHH
Q 010273 100 AGGKTSDVLGRKWT 113 (514)
Q Consensus 100 ~~g~l~dr~Grr~~ 113 (514)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36888999999864
No 16
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=21.73 E-value=1.2e+02 Score=19.98 Aligned_cols=30 Identities=17% Similarity=0.147 Sum_probs=13.7
Q ss_pred hcCcEehhhHHHHHHHHHHhhhccccCCCC
Q 010273 453 TVGGTFFVFSLISALSVAFVYKCVPETKGK 482 (514)
Q Consensus 453 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (514)
||...+.+...+.+++.-++-.++||+.+.
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~ 60 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQ 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTCSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhccc
Confidence 443333333334444444444566776543
Done!