Query 010273
Match_columns 514
No_of_seqs 470 out of 1344
Neff 11.3
Searched_HMMs 13730
Date Mon Mar 25 03:13:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010273.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010273hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 100.0 3.5E-41 2.6E-45 327.6 15.9 407 40-476 19-431 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 100.0 3.3E-30 2.4E-34 246.7 14.1 381 57-486 18-410 (417)
3 d1pv7a_ f.38.1.2 (A:) Lactose 99.5 3.6E-15 2.6E-19 140.9 7.5 156 68-226 246-403 (417)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 99.3 1.4E-12 1E-16 124.5 10.8 151 68-221 272-428 (447)
5 d3proc1 d.52.1.1 (C:6-85) Alph 33.1 38 0.0028 21.2 4.5 42 68-109 3-44 (80)
6 d2axtt1 f.23.34.1 (T:1-30) Pho 16.2 58 0.0042 15.0 2.5 9 220-228 20-28 (30)
7 d2fyuk1 f.23.15.1 (K:1-53) Sub 12.7 87 0.0063 17.5 2.6 40 159-205 2-41 (53)
8 d1u7ga_ f.44.1.1 (A:) Ammonium 12.6 3.6E+02 0.026 22.4 10.0 48 143-190 284-331 (383)
9 d1q90n_ f.23.27.1 (N:) PetN su 4.9 2.1E+02 0.015 13.3 3.6 22 82-103 7-28 (31)
10 d1v54g_ f.23.2.1 (G:) Mitochon 4.0 3.4E+02 0.024 16.8 2.7 24 202-225 16-39 (84)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=3.5e-41 Score=327.57 Aligned_cols=407 Identities=14% Similarity=0.040 Sum_probs=290.0
Q ss_pred CchhhHHHHHHHHHhhhhhhhhhhhcchhHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHH
Q 010273 40 TRKYVLACAFFASLNSVLLGYDVGVMSGAIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAI 119 (514)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~ 119 (514)
.++++|.++..++++.+..++++..++.+.|.++ |+|+|.+|+|++.+++.+++.++++++|+++||+|||+++..+.+
T Consensus 19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 97 (447)
T d1pw4a_ 19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 97 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 4556788888888888888889999999999886 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh----hHHHHHHHHHHHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHhhhccc
Q 010273 120 VFQAGAAIMTLAP----SFAVLIIGRLLAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSR 195 (514)
Q Consensus 120 ~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~ 195 (514)
+.+++.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~ 177 (447)
T d1pw4a_ 98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 177 (447)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence 9999999998774 778999999999999999999999999999999999999999999999999999988776432
Q ss_pred CCCCccchhhHhhchHHHHHHHHH-HhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhH
Q 010273 196 LPAHINWRVMLGVGILPSVFIALA-LFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEE 274 (514)
Q Consensus 196 ~~~~~~Wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (514)
...+||+.|++.+++.++..++ +++++|+|+........+. ..+..++.. +..+++...+
T Consensus 178 --~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~------~~~~~~~~~~ 238 (447)
T d1pw4a_ 178 --WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYPDDYN------EKAEQELTAK 238 (447)
T ss_dssp --HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC-------------------CCT
T ss_pred --hhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh-----------hhhcccchh------hccccccchh
Confidence 2348999999977776665555 5566666642111110000 000000000 0000111122
Q ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHhhhccceeeccchHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010273 275 KAVWREIINPSPAVRRMLITGCGIQCFQQITGIDATVYYSPTIFKGAGIKGNNELLAATVAVGFTKTIFILIAIILIDKV 354 (514)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 354 (514)
+...+..++ ++.++......++.....+....+.|.++.+..+.+....+.......+..+++.++.|++.||+
T Consensus 239 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 312 (447)
T d1pw4a_ 239 QIFMQYVLP------NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 312 (447)
T ss_dssp HHHHHHTSS------CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHc------CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc
Confidence 223333333 33344444444444444556677889999888777777778888888899999999999999999
Q ss_pred CCchhhhhhhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHHHHHH
Q 010273 355 GRKPLLYVSTIGMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALGAVGS 434 (514)
Q Consensus 355 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 434 (514)
+|++..........+........... .....+. ........++...+..+....+..|.+|++.|+++.|+.+...
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 388 (447)
T d1pw4a_ 313 FRGNRGATGVFFMTLVTIATIVYWMN---PAGNPTV-DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG 388 (447)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHTTSC---CTTCHHH-HHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHHHHHHHHHhc---ccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 98765554444333332222221111 1111122 2222222333344445566778899999999999999999988
Q ss_pred HHHH-HHHHHHHHHHHhhhhcCcEehhhHHHHHHHHHHhhhcc
Q 010273 435 RVSS-GAIAMSFLSVSHAITVGGTFFVFSLISALSVAFVYKCV 476 (514)
Q Consensus 435 ~~g~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 476 (514)
++++ .++|.+.|.+.+..|+...+++.+++.+++.++.+...
T Consensus 389 ~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 389 YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 8854 56789999999999988888888777777766655544
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.96 E-value=3.3e-30 Score=246.65 Aligned_cols=381 Identities=14% Similarity=0.120 Sum_probs=244.2
Q ss_pred hhhhhhhhcchhHhh-hhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHH
Q 010273 57 LLGYDVGVMSGAIIF-IKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFA 135 (514)
Q Consensus 57 ~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 135 (514)
+..+......+.+|. +++++|+|++++|++.+++.+++.++++++|+++||+|||++++++..+..++.++..+..+..
T Consensus 18 ~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~ 97 (417)
T d1pv7a_ 18 FYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334466667777774 7888999999999999999999999999999999999999999999999999998888876655
Q ss_pred HH----HHHHHHHhccccccccchhhhhhhcccc--ccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhhHhhc
Q 010273 136 VL----IIGRLLAGVGIGFGVMIAPLYIAEISPS--IARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVMLGVG 209 (514)
Q Consensus 136 ~~----~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~ 209 (514)
.. ++.+.+.+.+.+...........+..++ +++.+..+........+..+++.+++.+.. .+|+..+...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~ 173 (417)
T d1pv7a_ 98 LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLG 173 (417)
T ss_dssp HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH----HCHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc----ccccccccch
Confidence 43 4555666666555555555444444433 345566777888888888999998887543 3666666654
Q ss_pred h-HHHHHHHHHHhhccCChhHHHHcCCHHHHHHHHHHhccChhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhCCCHHH
Q 010273 210 I-LPSVFIALALFVIPESPRWLVMQGRIDEARLVLSKTNESVKEVEERLAEIQVAAGSDNAEKNEEKAVWREIINPSPAV 288 (514)
Q Consensus 210 ~-~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (514)
. ...+...+..+..+|+++.. .+.++.+ + ..+........+..+.+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--------------------------~-~~~~~~~~~~~~~~~~~~~~ 223 (417)
T d1pv7a_ 174 SGCALILAVLLFFAKTDAPSSA---TVANAVG--------------------------A-NHSAFSLKLALELFRQPKLW 223 (417)
T ss_dssp HHHHHHHHHHHHSSCCCSCSSS---CSSHHHH--------------------------S-CCCCCCHHHHHHHTTSSHHH
T ss_pred hhHHHHHHHHHHHHhcccccch---hhhhhhh--------------------------h-hccccccccccccccccccc
Confidence 4 44444555566677766310 0000000 0 00111111222222212111
Q ss_pred HHHHHHHHHHHHHhhhccceeeccchHHHhhhc---CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhH
Q 010273 289 RRMLITGCGIQCFQQITGIDATVYYSPTIFKGA---GIKGNNELLAATVAVGFTKTIFILIAIILIDKVGRKPLLYVSTI 365 (514)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~ 365 (514)
. ........... .. ......+.+.... ...+....+.......++..++..+.+++.||.++|+.+..+..
T Consensus 224 ~-~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~ 297 (417)
T d1pv7a_ 224 F-LSLYVIGVSCT-YD----VFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGT 297 (417)
T ss_dssp H-HHHHHHHHHHH-HH----HHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHH
T ss_pred c-hhhhhHHHHHH-HH----hhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHH
Confidence 1 11111111111 11 1111112222111 11223344455566778888899999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhhhccccccccceeeeeccChhhhhHHHHHH-HHHHHHHHHHHHHH
Q 010273 366 GMTICLLSLSLSLTFLGNGQLGIALAILSVCGNVAFFSVGIGPVCWVLSSEIFPLRLRAQASALG-AVGSRVSSGAIAMS 444 (514)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~ 444 (514)
+..++.+.+..... ...........++......+...++..|.+|++.|+++.|+. +....+|..++|.+
T Consensus 298 ~~~~~~~~~~~~~~---------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 368 (417)
T d1pv7a_ 298 IMSVRIIGSSFATS---------ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL 368 (417)
T ss_dssp HHHHHHHHHHTCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHhhhccccccc---------cchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655543221 111222222223333334466778899999999999999986 45677899999999
Q ss_pred HHHHHhhhhcCcEehhhHHHHHHHHHHhhhccccCCCCCHHH
Q 010273 445 FLSVSHAITVGGTFFVFSLISALSVAFVYKCVPETKGKSLEQ 486 (514)
Q Consensus 445 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (514)
.|.+.|..|++..+++.+++.++..++..+.++++++.+..+
T Consensus 369 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 369 AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence 999999999988999998888888887777777666555543
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.53 E-value=3.6e-15 Score=140.94 Aligned_cols=156 Identities=12% Similarity=0.008 Sum_probs=133.4
Q ss_pred hHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Q 010273 68 AIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQAGAAIMTLAPSFAVLIIGRLLAGVG 147 (514)
Q Consensus 68 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~ 147 (514)
..+...++.+.+....+...+...++..++..+.+++.||+|+|+++..+.++.+++.++.++.++.+.+++..++.|++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 325 (417)
T d1pv7a_ 246 FFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFE 325 (417)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHH
Confidence 33344555566777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhccccccccccchhh-HHHHHHHHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHH-HhhccC
Q 010273 148 IGFGVMIAPLYIAEISPSIARGSLTSFP-EIFINLGILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALA-LFVIPE 225 (514)
Q Consensus 148 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~-~~~~~e 225 (514)
.+...+...+++.|.+|+++|+++.++. .....+|..++|.+++.+ .++.||+..|++.++..++..++ .+.+++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l---~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM---YESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999975 566789999999999884 45679999999877777666555 444544
Q ss_pred C
Q 010273 226 S 226 (514)
Q Consensus 226 ~ 226 (514)
+
T Consensus 403 ~ 403 (417)
T d1pv7a_ 403 P 403 (417)
T ss_dssp S
T ss_pred C
Confidence 3
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.34 E-value=1.4e-12 Score=124.46 Aligned_cols=151 Identities=20% Similarity=0.140 Sum_probs=115.6
Q ss_pred hHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhhhHHHHHHHHHHHHH---HHHHHHh--hhhHHHHHHHHH
Q 010273 68 AIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLGRKWTIALAAIVFQA---GAAIMTL--APSFAVLIIGRL 142 (514)
Q Consensus 68 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~r~ 142 (514)
....+.+.++.+..+.++..+...++..++.++.|++.||++||+..........+ +.++... ..+.+...+.-+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (447)
T d1pw4a_ 272 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI 351 (447)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHH
T ss_pred hhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34467788999999999999999999999999999999999976543333333222 2222222 356777788888
Q ss_pred HHhccccccccchhhhhhhccccccccccchhhHHHHHH-HHHHHHHHhhhcccCCCCccchhhHhhchHHHHHHHHHHh
Q 010273 143 LAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINL-GILLGYISNYAFSRLPAHINWRVMLGVGILPSVFIALALF 221 (514)
Q Consensus 143 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~ 221 (514)
+.|++.+...+....+..|.+|++.|++++|+.+....+ |.+++|.+.+.+ .++.||+..|++.+...++..++..
T Consensus 352 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~---~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 352 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT---VDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhChHHHHHHHHHHHHHHHHHHH
Confidence 889988888888999999999999999999998877766 567788888874 4467999999886666665555433
No 5
>d3proc1 d.52.1.1 (C:6-85) Alpha-lytic protease prodomain {Lysobacter enzymogenes [TaxId: 69]}
Probab=33.10 E-value=38 Score=21.16 Aligned_cols=42 Identities=10% Similarity=0.011 Sum_probs=30.0
Q ss_pred hHhhhhhccccChhHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q 010273 68 AIIFIKEDLKITEVQQEVLVGILSIISLFGSLAGGKTSDVLG 109 (514)
Q Consensus 68 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G 109 (514)
++..|+.|||+|+.|..--...-.-...+-.-+-.-+.|+||
T Consensus 3 l~~AmqRDLgLt~~qa~~RLa~E~~A~~~~~~lr~~lg~~fa 44 (80)
T d3proc1 3 LKFAMQRDLGIFPTQLPQYLQTEKLARTQAAAIEREFGAQFA 44 (80)
T ss_dssp HHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGEE
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 345689999999999877666666666666666666666664
No 6
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.21 E-value=58 Score=14.98 Aligned_cols=9 Identities=33% Similarity=0.604 Sum_probs=5.5
Q ss_pred HhhccCChh
Q 010273 220 LFVIPESPR 228 (514)
Q Consensus 220 ~~~~~e~~~ 228 (514)
..+++|+|+
T Consensus 20 aiffreppr 28 (30)
T d2axtt1 20 AIFFREPPR 28 (30)
T ss_dssp HHHTSCCCC
T ss_pred HHHhcCCCC
Confidence 445677774
No 7
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.66 E-value=87 Score=17.49 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=22.9
Q ss_pred hhhccccccccccchhhHHHHHHHHHHHHHHhhhcccCCCCccchhh
Q 010273 159 IAEISPSIARGSLTSFPEIFINLGILLGYISNYAFSRLPAHINWRVM 205 (514)
Q Consensus 159 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~Wr~~ 205 (514)
++....+++...+..+.-.....|.+-+-.+..+ .+||.+
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a~gl~lvy~-------TDWkli 41 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAVGAVGLVWA-------TDWRLI 41 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTCHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhhhheeeeee-------ehHHHH
Confidence 3445556666666666666666666544433333 478854
No 8
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=12.61 E-value=3.6e+02 Score=22.39 Aligned_cols=48 Identities=10% Similarity=0.064 Sum_probs=25.0
Q ss_pred HHhccccccccchhhhhhhccccccccccchhhHHHHHHHHHHHHHHh
Q 010273 143 LAGVGIGFGVMIAPLYIAEISPSIARGSLTSFPEIFINLGILLGYISN 190 (514)
Q Consensus 143 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 190 (514)
+.|+..+........++.+..+-++---+.++...+.-.|.+..++.+
T Consensus 284 ~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glfa 331 (383)
T d1u7ga_ 284 IIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFA 331 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhccHHHHHHHHHHHhhcccccccceEeehhhhHHHHHHHHHHhc
Confidence 334444444444444444444444444566666666666666655553
No 9
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.86 E-value=2.1e+02 Score=13.29 Aligned_cols=22 Identities=9% Similarity=-0.053 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q 010273 82 QQEVLVGILSIISLFGSLAGGK 103 (514)
Q Consensus 82 ~~~~~~s~~~~~~~i~~~~~g~ 103 (514)
+++|......+.+.++-.+||+
T Consensus 7 ~~awaa~~atfsfslslvvwgr 28 (31)
T d1q90n_ 7 QIGWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EhHHHHHHHhheeeEEEEEEec
Confidence 3444444444444455555543
No 10
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.96 E-value=3.4e+02 Score=16.80 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=0.0
Q ss_pred chhhHhhchHHHHHHHHHHhhccC
Q 010273 202 WRVMLGVGILPSVFIALALFVIPE 225 (514)
Q Consensus 202 Wr~~f~~~~~~~~~~~~~~~~~~e 225 (514)
||-+-++.++++++++.+-.++.+
T Consensus 16 Wkkis~~va~P~i~l~~~n~~~~~ 39 (84)
T d1v54g_ 16 WRFLTFGLALPSVALCTLNSWLHS 39 (84)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Done!