Query 010274
Match_columns 514
No_of_seqs 628 out of 3068
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 22:36:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 3E-125 7E-130 986.6 24.2 415 93-513 1-419 (506)
2 COG2226 UbiE Methylase involve 99.7 6.1E-17 1.3E-21 159.5 12.3 136 215-351 51-225 (238)
3 PF01209 Ubie_methyltran: ubiE 99.7 5.8E-17 1.3E-21 160.1 9.2 101 216-317 48-153 (233)
4 PLN02233 ubiquinone biosynthes 99.6 3.4E-14 7.4E-19 142.7 15.8 135 216-351 74-249 (261)
5 PLN02244 tocopherol O-methyltr 99.6 3.5E-14 7.6E-19 147.8 16.0 134 215-350 118-278 (340)
6 PF08241 Methyltransf_11: Meth 99.6 5.3E-15 1.2E-19 123.0 7.0 93 220-315 1-95 (95)
7 PF13489 Methyltransf_23: Meth 99.6 1E-14 2.2E-19 133.5 8.5 122 215-347 22-160 (161)
8 PTZ00098 phosphoethanolamine N 99.5 6E-14 1.3E-18 141.1 14.2 158 186-357 31-209 (263)
9 PLN02396 hexaprenyldihydroxybe 99.5 3.5E-14 7.6E-19 146.5 10.8 136 215-352 131-291 (322)
10 TIGR02752 MenG_heptapren 2-hep 99.5 3.1E-13 6.7E-18 132.4 16.2 102 216-318 46-152 (231)
11 COG2227 UbiG 2-polyprenyl-3-me 99.5 3.8E-14 8.2E-19 138.2 9.2 102 216-319 60-163 (243)
12 PRK10258 biotin biosynthesis p 99.5 7.9E-13 1.7E-17 131.4 15.5 99 216-320 43-143 (251)
13 PRK11036 putative S-adenosyl-L 99.5 4.2E-13 9.2E-18 134.0 13.2 134 216-351 45-208 (255)
14 PRK14103 trans-aconitate 2-met 99.5 4.6E-13 9.9E-18 133.7 13.4 95 216-319 30-128 (255)
15 PLN02336 phosphoethanolamine N 99.4 1E-12 2.2E-17 142.5 14.5 135 215-351 266-415 (475)
16 KOG1540 Ubiquinone biosynthesi 99.4 7.4E-13 1.6E-17 129.5 11.1 100 215-316 100-213 (296)
17 PLN02490 MPBQ/MSBQ methyltrans 99.4 3.9E-12 8.4E-17 132.0 16.9 134 216-355 114-261 (340)
18 PRK15068 tRNA mo(5)U34 methylt 99.4 9.9E-13 2.1E-17 136.0 12.4 134 216-351 123-275 (322)
19 PRK11873 arsM arsenite S-adeno 99.4 2.8E-12 6.2E-17 129.0 14.3 132 216-349 78-229 (272)
20 PRK11207 tellurite resistance 99.4 1.7E-12 3.8E-17 124.9 11.7 136 217-357 32-177 (197)
21 PRK08317 hypothetical protein; 99.4 7.7E-12 1.7E-16 121.6 15.7 149 193-351 5-177 (241)
22 PRK05785 hypothetical protein; 99.4 2E-12 4.4E-17 127.2 10.3 94 216-318 52-149 (226)
23 TIGR00452 methyltransferase, p 99.4 4.6E-12 1E-16 130.4 13.2 132 216-351 122-274 (314)
24 PF13847 Methyltransf_31: Meth 99.4 1.7E-12 3.6E-17 119.4 9.0 101 216-319 4-112 (152)
25 PF12847 Methyltransf_18: Meth 99.3 2.8E-12 6E-17 110.9 8.5 100 217-317 3-111 (112)
26 TIGR00477 tehB tellurite resis 99.3 8.1E-12 1.8E-16 120.1 12.6 137 217-358 32-177 (195)
27 smart00828 PKS_MT Methyltransf 99.3 8.6E-12 1.9E-16 121.6 12.0 132 218-352 2-146 (224)
28 PRK11088 rrmA 23S rRNA methylt 99.3 6.7E-12 1.4E-16 126.7 11.3 96 217-320 87-184 (272)
29 PRK00107 gidB 16S rRNA methylt 99.3 1.9E-11 4.1E-16 117.0 13.4 120 216-351 46-170 (187)
30 PRK01683 trans-aconitate 2-met 99.3 6.6E-12 1.4E-16 125.2 10.5 98 216-320 32-133 (258)
31 TIGR02072 BioC biotin biosynth 99.3 2.6E-11 5.6E-16 118.1 14.5 99 216-320 35-138 (240)
32 TIGR00740 methyltransferase, p 99.3 2.8E-11 6.2E-16 119.6 14.6 100 217-319 55-163 (239)
33 PRK15451 tRNA cmo(5)U34 methyl 99.3 1.5E-11 3.3E-16 122.4 12.3 100 216-318 57-165 (247)
34 PF13649 Methyltransf_25: Meth 99.3 1.8E-12 3.9E-17 110.9 3.5 92 219-311 1-101 (101)
35 PF05219 DREV: DREV methyltran 99.3 1.9E-11 4.1E-16 120.8 11.0 168 169-350 52-240 (265)
36 PRK12335 tellurite resistance 99.3 2.4E-11 5.1E-16 123.7 11.8 131 217-352 122-261 (287)
37 PF08242 Methyltransf_12: Meth 99.2 2.1E-12 4.5E-17 109.9 1.8 93 220-313 1-99 (99)
38 PF07021 MetW: Methionine bios 99.2 4.6E-11 1E-15 113.5 10.9 128 217-351 15-168 (193)
39 COG4106 Tam Trans-aconitate me 99.2 4.5E-11 9.8E-16 114.6 10.7 198 215-452 30-231 (257)
40 PRK00121 trmB tRNA (guanine-N( 99.2 3.9E-11 8.5E-16 116.0 10.3 122 216-346 41-177 (202)
41 PF02353 CMAS: Mycolic acid cy 99.2 4.4E-11 9.5E-16 121.0 10.9 132 216-352 63-219 (273)
42 TIGR00138 gidB 16S rRNA methyl 99.2 9.9E-11 2.2E-15 111.5 12.4 123 216-351 43-170 (181)
43 KOG1270 Methyltransferases [Co 99.2 1.1E-11 2.3E-16 122.1 5.2 98 216-318 90-196 (282)
44 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 1.7E-10 3.6E-15 111.5 13.1 97 216-318 40-144 (223)
45 COG4976 Predicted methyltransf 99.2 1.5E-11 3.2E-16 118.7 5.6 134 215-352 125-267 (287)
46 PRK00216 ubiE ubiquinone/menaq 99.2 2.8E-10 6.1E-15 111.1 13.0 100 217-317 53-158 (239)
47 KOG4300 Predicted methyltransf 99.2 8.1E-11 1.7E-15 112.1 8.8 100 218-318 79-183 (252)
48 COG2230 Cfa Cyclopropane fatty 99.2 3.8E-10 8.2E-15 113.7 14.1 160 178-350 43-223 (283)
49 PF03141 Methyltransf_29: Puta 99.2 3.5E-11 7.5E-16 128.1 6.6 127 213-351 363-492 (506)
50 TIGR02021 BchM-ChlM magnesium 99.2 3.5E-10 7.7E-15 110.2 13.1 131 216-351 56-207 (219)
51 PF03848 TehB: Tellurite resis 99.2 1.3E-10 2.7E-15 111.5 9.3 137 216-357 31-176 (192)
52 TIGR01983 UbiG ubiquinone bios 99.1 4.3E-10 9.4E-15 109.4 12.7 134 216-351 46-204 (224)
53 smart00138 MeTrc Methyltransfe 99.1 1.4E-10 3.1E-15 116.7 9.5 97 216-318 100-243 (264)
54 PF08003 Methyltransf_9: Prote 99.1 4.2E-10 9.1E-15 113.7 12.4 133 215-351 115-268 (315)
55 PRK05134 bifunctional 3-demeth 99.1 9.3E-10 2E-14 108.0 14.6 133 216-350 49-205 (233)
56 TIGR00091 tRNA (guanine-N(7)-) 99.1 3.3E-10 7.1E-15 108.8 11.0 122 217-347 18-155 (194)
57 PLN02585 magnesium protoporphy 99.1 9E-10 2E-14 113.6 14.5 129 216-349 145-298 (315)
58 PLN02336 phosphoethanolamine N 99.1 2.8E-10 6.1E-15 123.5 11.1 130 217-349 39-181 (475)
59 PRK11188 rrmJ 23S rRNA methylt 99.1 4.2E-10 9.1E-15 109.5 10.7 91 216-318 52-166 (209)
60 PRK04266 fibrillarin; Provisio 99.1 1.1E-09 2.4E-14 107.9 13.6 130 216-351 73-211 (226)
61 PRK08287 cobalt-precorrin-6Y C 99.1 2.8E-09 6E-14 101.5 16.1 121 216-350 32-156 (187)
62 PRK09489 rsmC 16S ribosomal RN 99.1 3.8E-10 8.3E-15 117.7 10.9 101 217-321 198-307 (342)
63 PRK06202 hypothetical protein; 99.1 1.3E-09 2.8E-14 107.3 13.9 94 215-316 60-165 (232)
64 TIGR00537 hemK_rel_arch HemK-r 99.1 1.3E-09 2.9E-14 102.9 13.3 122 217-350 21-165 (179)
65 PRK06922 hypothetical protein; 99.1 2.8E-10 6.1E-15 125.6 9.7 101 216-318 419-538 (677)
66 TIGR03587 Pse_Me-ase pseudamin 99.1 7.1E-10 1.5E-14 107.6 11.0 97 216-317 44-142 (204)
67 PF05175 MTS: Methyltransferas 99.1 2.1E-10 4.6E-15 107.9 6.5 100 217-319 33-142 (170)
68 TIGR03534 RF_mod_PrmC protein- 99.1 3.3E-09 7.1E-14 104.8 15.0 123 217-350 89-241 (251)
69 TIGR01177 conserved hypothetic 99.0 2.1E-09 4.5E-14 111.6 13.5 122 216-350 183-315 (329)
70 COG2264 PrmA Ribosomal protein 99.0 1.7E-09 3.7E-14 109.8 12.5 122 215-351 162-289 (300)
71 TIGR00406 prmA ribosomal prote 99.0 2.5E-09 5.5E-14 109.0 13.8 117 217-349 161-282 (288)
72 TIGR02469 CbiT precorrin-6Y C5 99.0 2.9E-09 6.3E-14 93.1 12.4 97 217-317 21-122 (124)
73 PRK00517 prmA ribosomal protei 99.0 3.8E-09 8.3E-14 105.4 14.8 116 216-350 120-238 (250)
74 PRK15001 SAM-dependent 23S rib 99.0 1.4E-09 2.9E-14 114.7 12.0 129 217-347 230-370 (378)
75 PLN02232 ubiquinone biosynthes 99.0 7.8E-10 1.7E-14 103.1 9.0 111 240-351 2-148 (160)
76 TIGR02081 metW methionine bios 99.0 2.4E-09 5.2E-14 102.6 12.5 123 217-350 15-167 (194)
77 PF05401 NodS: Nodulation prot 99.0 1.1E-09 2.3E-14 104.6 9.9 98 214-318 42-147 (201)
78 TIGR03840 TMPT_Se_Te thiopurin 99.0 8.8E-10 1.9E-14 107.6 9.0 99 217-316 36-151 (213)
79 COG2813 RsmC 16S RNA G1207 met 99.0 1.2E-09 2.7E-14 110.4 10.0 160 178-347 128-296 (300)
80 TIGR02716 C20_methyl_CrtF C-20 99.0 3.3E-09 7.1E-14 108.8 13.3 127 216-347 150-303 (306)
81 PF06325 PrmA: Ribosomal prote 99.0 2E-09 4.2E-14 109.9 11.1 145 185-351 137-284 (295)
82 PRK14968 putative methyltransf 99.0 6.3E-09 1.4E-13 98.0 13.5 123 217-349 25-172 (188)
83 PRK14967 putative methyltransf 99.0 1.1E-08 2.5E-13 100.1 15.8 122 217-348 38-182 (223)
84 PRK11705 cyclopropane fatty ac 99.0 1.9E-09 4E-14 114.2 10.8 93 216-317 168-267 (383)
85 COG4123 Predicted O-methyltran 99.0 1.8E-09 3.9E-14 107.0 9.6 153 216-377 45-226 (248)
86 PRK07580 Mg-protoporphyrin IX 99.0 7.9E-09 1.7E-13 100.8 14.0 130 216-351 64-215 (230)
87 KOG1541 Predicted protein carb 99.0 3.1E-09 6.6E-14 102.4 9.6 118 215-344 50-181 (270)
88 PTZ00146 fibrillarin; Provisio 99.0 1.2E-08 2.5E-13 103.7 14.4 131 216-351 133-272 (293)
89 KOG1271 Methyltransferases [Ge 98.9 9.4E-09 2E-13 96.4 12.1 123 218-350 70-205 (227)
90 PRK00377 cbiT cobalt-precorrin 98.9 9.9E-09 2.2E-13 98.8 12.5 116 216-344 41-164 (198)
91 PRK13944 protein-L-isoaspartat 98.9 6.8E-09 1.5E-13 100.6 11.4 93 217-317 74-173 (205)
92 PRK14121 tRNA (guanine-N(7)-)- 98.9 5.2E-09 1.1E-13 110.2 10.3 100 217-317 124-235 (390)
93 PRK13255 thiopurine S-methyltr 98.9 8.5E-09 1.8E-13 101.1 10.4 98 217-315 39-153 (218)
94 PRK13942 protein-L-isoaspartat 98.9 1E-08 2.2E-13 100.0 10.7 94 216-317 77-176 (212)
95 PF06080 DUF938: Protein of un 98.9 1.4E-08 3E-13 97.9 11.4 142 218-367 28-203 (204)
96 PRK14966 unknown domain/N5-glu 98.9 4E-08 8.8E-13 104.2 15.8 125 217-351 253-406 (423)
97 PLN03075 nicotianamine synthas 98.9 7.9E-09 1.7E-13 105.2 9.9 102 215-317 123-233 (296)
98 TIGR00080 pimt protein-L-isoas 98.8 2.4E-08 5.1E-13 97.4 11.5 94 216-317 78-177 (215)
99 PF13659 Methyltransf_26: Meth 98.8 2.9E-09 6.3E-14 92.8 4.5 102 217-318 2-116 (117)
100 cd02440 AdoMet_MTases S-adenos 98.8 1.8E-08 3.9E-13 83.0 8.4 98 218-316 1-103 (107)
101 TIGR03533 L3_gln_methyl protei 98.8 5.1E-08 1.1E-12 99.3 13.5 122 217-350 123-274 (284)
102 PRK09328 N5-glutamine S-adenos 98.8 5.4E-08 1.2E-12 97.7 12.8 123 216-348 109-260 (275)
103 PRK07402 precorrin-6B methylas 98.8 1.4E-07 3.1E-12 90.4 15.0 99 216-319 41-144 (196)
104 TIGR00536 hemK_fam HemK family 98.8 5.8E-08 1.2E-12 98.8 12.4 123 217-350 116-269 (284)
105 KOG3010 Methyltransferase [Gen 98.8 1.1E-08 2.3E-13 100.0 6.5 115 217-344 35-158 (261)
106 TIGR03438 probable methyltrans 98.7 5.9E-08 1.3E-12 99.6 11.2 101 217-317 65-177 (301)
107 PF05148 Methyltransf_8: Hypot 98.7 6.3E-08 1.4E-12 93.3 10.5 112 216-350 73-185 (219)
108 KOG3987 Uncharacterized conser 98.7 2.5E-08 5.3E-13 95.2 6.7 131 173-317 76-207 (288)
109 TIGR03704 PrmC_rel_meth putati 98.7 3.6E-07 7.9E-12 91.5 15.3 120 217-348 88-238 (251)
110 PRK00312 pcm protein-L-isoaspa 98.7 1.6E-07 3.6E-12 91.1 11.9 96 216-318 79-176 (212)
111 TIGR00438 rrmJ cell division p 98.7 1.4E-07 3E-12 89.9 10.7 91 216-317 33-146 (188)
112 PRK11805 N5-glutamine S-adenos 98.7 1.7E-07 3.7E-12 96.5 12.1 120 217-348 135-284 (307)
113 PRK00811 spermidine synthase; 98.6 2.3E-07 5E-12 94.5 12.1 105 215-320 76-194 (283)
114 PRK01544 bifunctional N5-gluta 98.6 2.2E-07 4.9E-12 101.9 12.3 124 216-350 139-293 (506)
115 PRK14901 16S rRNA methyltransf 98.6 3.4E-07 7.4E-12 98.6 12.3 124 216-345 253-408 (434)
116 PRK10901 16S rRNA methyltransf 98.6 4.2E-07 9E-12 97.8 12.9 125 216-346 245-397 (427)
117 PF05891 Methyltransf_PK: AdoM 98.6 1.1E-07 2.4E-12 92.3 7.1 137 214-353 54-204 (218)
118 TIGR00563 rsmB ribosomal RNA s 98.6 4.9E-07 1.1E-11 97.2 12.5 105 216-321 239-372 (426)
119 PF02390 Methyltransf_4: Putat 98.6 3.7E-07 8.1E-12 88.0 10.4 121 218-347 20-157 (195)
120 PRK13256 thiopurine S-methyltr 98.6 3.7E-07 8.1E-12 89.9 10.5 100 217-317 45-163 (226)
121 KOG2940 Predicted methyltransf 98.5 1.1E-07 2.4E-12 92.1 6.2 134 217-353 74-230 (325)
122 COG2242 CobL Precorrin-6B meth 98.5 1.1E-06 2.4E-11 83.4 12.8 118 216-347 35-158 (187)
123 KOG3045 Predicted RNA methylas 98.5 4.4E-07 9.6E-12 89.5 10.3 113 215-351 180-292 (325)
124 KOG2361 Predicted methyltransf 98.5 3.9E-07 8.5E-12 89.2 9.8 128 218-350 74-237 (264)
125 PRK14904 16S rRNA methyltransf 98.5 6.3E-07 1.4E-11 96.9 11.6 123 216-345 251-401 (445)
126 PRK13943 protein-L-isoaspartat 98.5 8.3E-07 1.8E-11 92.0 10.9 93 217-317 82-180 (322)
127 PHA03411 putative methyltransf 98.5 8.9E-07 1.9E-11 89.2 10.6 121 217-347 66-211 (279)
128 TIGR00446 nop2p NOL1/NOP2/sun 98.5 7.3E-07 1.6E-11 89.9 10.0 104 216-320 72-202 (264)
129 PRK04457 spermidine synthase; 98.5 4.8E-07 1E-11 91.2 8.6 103 215-317 66-177 (262)
130 COG2890 HemK Methylase of poly 98.5 2E-06 4.3E-11 87.5 13.1 121 218-350 113-263 (280)
131 PRK11783 rlmL 23S rRNA m(2)G24 98.4 5E-07 1.1E-11 102.9 9.3 127 216-351 539-681 (702)
132 TIGR00417 speE spermidine synt 98.4 2.3E-06 4.9E-11 86.6 12.8 122 215-341 72-206 (270)
133 PRK14902 16S rRNA methyltransf 98.4 1.6E-06 3.4E-11 93.8 12.3 124 216-346 251-404 (444)
134 PRK14903 16S rRNA methyltransf 98.4 6.7E-07 1.4E-11 96.3 9.3 104 216-320 238-369 (431)
135 PRK01581 speE spermidine synth 98.4 4E-06 8.6E-11 87.7 14.3 126 215-350 150-297 (374)
136 PF01135 PCMT: Protein-L-isoas 98.4 6.9E-07 1.5E-11 87.1 8.2 110 193-317 58-172 (209)
137 COG2519 GCD14 tRNA(1-methylade 98.4 3E-06 6.4E-11 84.0 12.4 118 216-348 95-218 (256)
138 PF03291 Pox_MCEL: mRNA cappin 98.4 6.5E-07 1.4E-11 93.0 7.5 105 215-320 62-189 (331)
139 PRK03612 spermidine synthase; 98.4 2.3E-06 5.1E-11 94.2 11.6 120 215-344 297-438 (521)
140 PLN02366 spermidine synthase 98.4 4.7E-06 1E-10 85.9 13.0 122 215-341 91-226 (308)
141 KOG1975 mRNA cap methyltransfe 98.3 1E-06 2.2E-11 89.4 7.4 105 216-321 118-241 (389)
142 COG2518 Pcm Protein-L-isoaspar 98.3 2.8E-06 6E-11 82.3 10.0 94 216-317 73-169 (209)
143 smart00650 rADc Ribosomal RNA 98.3 2E-06 4.4E-11 80.6 8.5 94 217-316 15-112 (169)
144 PRK13168 rumA 23S rRNA m(5)U19 98.3 6.2E-06 1.3E-10 89.2 13.1 121 217-353 299-427 (443)
145 PF11968 DUF3321: Putative met 98.3 4.4E-06 9.5E-11 81.1 10.2 118 217-351 53-182 (219)
146 PF07942 N2227: N2227-like pro 98.3 5.7E-06 1.2E-10 83.4 11.3 133 215-350 56-242 (270)
147 PLN02781 Probable caffeoyl-CoA 98.2 3.2E-06 6.8E-11 83.8 8.6 97 216-317 69-178 (234)
148 PLN02672 methionine S-methyltr 98.2 5.7E-06 1.2E-10 97.0 12.0 123 216-347 119-300 (1082)
149 PRK11727 23S rRNA mA1618 methy 98.2 8.1E-06 1.8E-10 84.5 11.7 98 190-287 89-197 (321)
150 COG1041 Predicted DNA modifica 98.2 1.1E-05 2.4E-10 83.4 12.6 138 193-351 183-331 (347)
151 COG0220 Predicted S-adenosylme 98.2 3.3E-06 7.2E-11 83.3 8.2 98 218-317 51-164 (227)
152 PF01739 CheR: CheR methyltran 98.2 3E-06 6.6E-11 81.8 7.8 104 215-319 31-177 (196)
153 PRK15128 23S rRNA m(5)C1962 me 98.2 6.9E-06 1.5E-10 87.5 11.1 103 216-319 221-341 (396)
154 TIGR00478 tly hemolysin TlyA f 98.2 1E-05 2.2E-10 79.9 11.3 119 215-348 75-215 (228)
155 PF00891 Methyltransf_2: O-met 98.2 3.5E-06 7.6E-11 83.3 7.7 95 214-318 99-200 (241)
156 TIGR00479 rumA 23S rRNA (uraci 98.2 1.4E-05 3.1E-10 85.9 12.5 122 217-351 294-421 (431)
157 PHA03412 putative methyltransf 98.2 5E-06 1.1E-10 82.2 8.0 90 217-312 51-158 (241)
158 PF08704 GCD14: tRNA methyltra 98.1 1.8E-05 3.9E-10 79.0 11.5 120 216-350 41-171 (247)
159 PRK03522 rumB 23S rRNA methylu 98.1 2.1E-05 4.6E-10 81.3 11.9 120 217-352 175-298 (315)
160 PF05724 TPMT: Thiopurine S-me 98.1 1.5E-05 3.2E-10 78.3 10.2 134 216-350 38-190 (218)
161 PRK10909 rsmD 16S rRNA m(2)G96 98.1 2.4E-05 5.2E-10 75.8 11.3 121 188-319 33-161 (199)
162 PF12147 Methyltransf_20: Puta 98.1 1.8E-05 3.9E-10 79.8 10.5 150 198-349 118-297 (311)
163 COG0500 SmtA SAM-dependent met 98.0 2.8E-05 6.2E-10 66.4 9.3 99 219-320 52-158 (257)
164 KOG2899 Predicted methyltransf 98.0 1.2E-05 2.5E-10 79.0 7.5 101 216-316 59-208 (288)
165 PRK01544 bifunctional N5-gluta 98.0 2.4E-05 5.2E-10 86.0 10.6 122 215-346 347-484 (506)
166 PRK10611 chemotaxis methyltran 98.0 3.7E-05 8E-10 78.5 10.1 54 263-317 206-262 (287)
167 PF10294 Methyltransf_16: Puta 98.0 1.8E-05 3.8E-10 74.9 7.2 102 215-319 45-158 (173)
168 PLN02476 O-methyltransferase 98.0 2.2E-05 4.8E-10 79.7 8.2 96 216-316 119-227 (278)
169 COG4122 Predicted O-methyltran 98.0 2.5E-05 5.5E-10 76.5 8.3 96 216-316 60-165 (219)
170 COG2521 Predicted archaeal met 98.0 1.4E-05 3E-10 78.1 6.3 132 215-350 134-277 (287)
171 PF01596 Methyltransf_3: O-met 97.9 3.2E-05 6.9E-10 75.3 8.4 97 216-317 46-155 (205)
172 TIGR02085 meth_trns_rumB 23S r 97.9 9.5E-05 2.1E-09 78.3 12.3 120 217-352 235-358 (374)
173 KOG1269 SAM-dependent methyltr 97.9 2.2E-05 4.7E-10 82.6 7.2 97 218-315 113-213 (364)
174 KOG2904 Predicted methyltransf 97.9 8.6E-05 1.9E-09 74.2 10.7 122 191-318 129-286 (328)
175 COG1352 CheR Methylase of chem 97.8 7.7E-05 1.7E-09 75.4 9.4 103 215-318 96-242 (268)
176 KOG1331 Predicted methyltransf 97.7 1.9E-05 4.1E-10 79.3 3.3 98 216-320 46-146 (293)
177 PF05185 PRMT5: PRMT5 arginine 97.7 4.8E-05 1E-09 82.3 6.6 95 216-314 187-294 (448)
178 KOG1499 Protein arginine N-met 97.7 4.2E-05 9E-10 78.9 5.4 96 216-314 61-164 (346)
179 COG2263 Predicted RNA methylas 97.7 8.8E-05 1.9E-09 70.6 6.4 119 215-349 45-167 (198)
180 PRK14896 ksgA 16S ribosomal RN 97.6 0.00015 3.2E-09 72.9 8.0 68 216-287 30-99 (258)
181 PLN02589 caffeoyl-CoA O-methyl 97.6 9.4E-05 2E-09 74.0 6.3 95 216-315 80-188 (247)
182 PF02527 GidB: rRNA small subu 97.6 0.00069 1.5E-08 64.9 11.8 142 193-350 29-175 (184)
183 PRK00274 ksgA 16S ribosomal RN 97.6 0.00013 2.9E-09 73.8 7.2 67 217-286 44-112 (272)
184 COG3963 Phospholipid N-methylt 97.6 0.00038 8.1E-09 65.1 9.1 101 217-317 50-156 (194)
185 PF01170 UPF0020: Putative RNA 97.6 0.0003 6.4E-09 67.0 8.7 121 216-350 29-171 (179)
186 KOG1661 Protein-L-isoaspartate 97.5 0.00071 1.5E-08 65.4 10.4 93 217-316 84-192 (237)
187 PLN02823 spermine synthase 97.5 0.00082 1.8E-08 70.2 11.8 97 215-317 103-220 (336)
188 PRK04338 N(2),N(2)-dimethylgua 97.4 0.00029 6.3E-09 74.8 7.0 97 217-318 59-159 (382)
189 PF02475 Met_10: Met-10+ like- 97.3 0.00055 1.2E-08 66.4 7.4 126 172-314 68-199 (200)
190 PTZ00338 dimethyladenosine tra 97.3 0.00056 1.2E-08 70.2 7.9 69 216-286 37-108 (294)
191 PRK11933 yebU rRNA (cytosine-C 97.3 0.00099 2.1E-08 72.6 9.8 104 216-320 114-245 (470)
192 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.3 0.00031 6.7E-09 70.6 5.4 85 265-349 138-238 (256)
193 COG1092 Predicted SAM-dependen 97.3 0.0015 3.1E-08 69.5 10.3 128 216-346 218-362 (393)
194 PRK04148 hypothetical protein; 97.3 0.0011 2.3E-08 60.2 8.0 81 216-307 17-101 (134)
195 PRK05031 tRNA (uracil-5-)-meth 97.3 0.0017 3.7E-08 68.5 10.8 119 217-352 208-345 (362)
196 TIGR00095 RNA methyltransferas 97.3 0.0016 3.4E-08 62.5 9.6 98 217-318 51-160 (189)
197 KOG3191 Predicted N6-DNA-methy 97.3 0.0023 5E-08 60.7 10.2 122 216-347 44-190 (209)
198 TIGR00755 ksgA dimethyladenosi 97.2 0.0015 3.2E-08 65.3 9.6 67 216-286 30-101 (253)
199 PF09243 Rsm22: Mitochondrial 97.2 0.0037 7.9E-08 63.5 12.5 120 214-347 32-165 (274)
200 COG0421 SpeE Spermidine syntha 97.2 0.002 4.4E-08 65.7 10.5 104 215-324 76-197 (282)
201 COG0357 GidB Predicted S-adeno 97.2 0.0049 1.1E-07 60.4 12.3 143 191-351 46-196 (215)
202 KOG1663 O-methyltransferase [S 97.2 0.0019 4E-08 63.4 9.2 95 217-316 75-182 (237)
203 KOG3201 Uncharacterized conser 97.1 0.00018 4E-09 66.7 1.7 134 217-358 31-175 (201)
204 PRK11760 putative 23S rRNA C24 97.1 0.0044 9.5E-08 64.5 11.4 117 215-343 211-332 (357)
205 PRK00536 speE spermidine synth 97.1 0.0042 9.2E-08 62.7 10.8 114 214-346 71-195 (262)
206 TIGR02143 trmA_only tRNA (urac 97.0 0.0024 5.2E-08 67.2 9.1 117 218-351 200-335 (353)
207 KOG3178 Hydroxyindole-O-methyl 97.0 0.0035 7.5E-08 65.0 9.9 95 216-318 178-276 (342)
208 PF01564 Spermine_synth: Sperm 97.0 0.0034 7.4E-08 62.8 9.5 125 215-344 76-214 (246)
209 COG2520 Predicted methyltransf 97.0 0.0056 1.2E-07 63.9 11.0 153 174-343 157-313 (341)
210 KOG2352 Predicted spermine/spe 96.9 0.003 6.6E-08 68.0 8.3 98 218-317 51-161 (482)
211 COG2265 TrmA SAM-dependent met 96.9 0.0092 2E-07 64.5 11.9 120 216-348 294-418 (432)
212 TIGR00308 TRM1 tRNA(guanine-26 96.9 0.0022 4.8E-08 68.0 7.0 96 217-318 46-148 (374)
213 PF02384 N6_Mtase: N-6 DNA Met 96.8 0.0022 4.8E-08 65.8 6.8 119 193-320 32-186 (311)
214 KOG2798 Putative trehalase [Ca 96.8 0.0083 1.8E-07 61.3 10.2 73 278-351 258-338 (369)
215 COG4627 Uncharacterized protei 96.7 0.00097 2.1E-08 61.6 2.8 76 270-346 38-134 (185)
216 KOG3420 Predicted RNA methylas 96.7 0.0012 2.6E-08 60.4 3.0 71 216-287 49-122 (185)
217 PF01728 FtsJ: FtsJ-like methy 96.7 0.0015 3.3E-08 61.6 3.7 91 215-317 23-139 (181)
218 TIGR02987 met_A_Alw26 type II 96.7 0.0084 1.8E-07 66.3 10.0 23 301-323 180-202 (524)
219 PF01269 Fibrillarin: Fibrilla 96.6 0.019 4.1E-07 56.4 11.0 131 216-351 74-213 (229)
220 COG0293 FtsJ 23S rRNA methylas 96.6 0.02 4.4E-07 55.5 11.1 91 216-317 46-159 (205)
221 TIGR03439 methyl_EasF probable 96.6 0.015 3.2E-07 60.4 10.8 101 217-317 78-197 (319)
222 KOG1500 Protein arginine N-met 96.5 0.0043 9.4E-08 63.7 6.2 91 216-315 178-280 (517)
223 PF10672 Methyltrans_SAM: S-ad 96.4 0.0035 7.5E-08 64.1 4.7 104 217-320 125-241 (286)
224 COG3897 Predicted methyltransf 96.2 0.017 3.7E-07 55.5 7.9 97 215-317 79-178 (218)
225 COG0030 KsgA Dimethyladenosine 96.2 0.016 3.5E-07 58.3 7.9 69 216-286 31-102 (259)
226 KOG2915 tRNA(1-methyladenosine 96.1 0.087 1.9E-06 53.1 12.6 133 196-350 94-235 (314)
227 PF08123 DOT1: Histone methyla 96.1 0.018 3.9E-07 56.1 7.5 98 216-315 43-156 (205)
228 KOG1709 Guanidinoacetate methy 96.0 0.028 6E-07 54.9 8.2 109 193-316 88-205 (271)
229 PF03602 Cons_hypoth95: Conser 95.9 0.0089 1.9E-07 57.2 4.4 131 177-318 11-154 (183)
230 COG0144 Sun tRNA and rRNA cyto 95.8 0.039 8.4E-07 58.2 9.2 125 216-346 157-313 (355)
231 KOG0820 Ribosomal RNA adenine 95.8 0.032 6.8E-07 56.2 7.7 69 216-286 59-130 (315)
232 COG1189 Predicted rRNA methyla 95.7 0.13 2.8E-06 51.1 11.4 126 214-349 78-223 (245)
233 COG0742 N6-adenine-specific me 95.5 0.17 3.6E-06 48.6 11.2 134 176-318 11-155 (187)
234 PF05958 tRNA_U5-meth_tr: tRNA 95.5 0.025 5.5E-07 59.5 6.3 55 218-272 199-255 (352)
235 PRK11783 rlmL 23S rRNA m(2)G24 95.5 0.04 8.7E-07 63.2 8.3 101 217-318 192-348 (702)
236 COG1889 NOP1 Fibrillarin-like 95.5 0.5 1.1E-05 45.9 14.3 153 187-351 53-215 (231)
237 PF04816 DUF633: Family of unk 95.4 0.12 2.7E-06 50.3 10.3 119 219-351 1-125 (205)
238 PF13679 Methyltransf_32: Meth 95.2 0.12 2.7E-06 46.9 9.0 97 214-319 24-133 (141)
239 PF04672 Methyltransf_19: S-ad 95.1 0.14 3.1E-06 51.7 9.8 102 215-318 68-191 (267)
240 PRK13699 putative methylase; P 95.1 0.068 1.5E-06 52.9 7.5 82 265-359 4-101 (227)
241 PLN02668 indole-3-acetate carb 95.0 0.16 3.5E-06 54.0 10.4 19 275-294 158-176 (386)
242 COG4798 Predicted methyltransf 94.6 0.3 6.5E-06 47.1 10.1 134 216-351 49-206 (238)
243 COG4262 Predicted spermidine s 94.6 0.16 3.4E-06 53.2 8.8 129 215-348 289-434 (508)
244 KOG3115 Methyltransferase-like 94.3 0.069 1.5E-06 51.7 5.2 99 218-317 63-183 (249)
245 PF03492 Methyltransf_7: SAM d 94.3 0.11 2.3E-06 54.5 7.0 80 214-294 15-121 (334)
246 COG0116 Predicted N6-adenine-s 94.3 0.22 4.8E-06 52.7 9.3 102 217-319 193-346 (381)
247 PF09445 Methyltransf_15: RNA 94.2 0.073 1.6E-06 50.0 5.0 68 218-286 2-76 (163)
248 PRK00050 16S rRNA m(4)C1402 me 94.2 0.075 1.6E-06 54.7 5.4 74 217-292 21-103 (296)
249 PF03059 NAS: Nicotianamine sy 94.0 0.31 6.8E-06 49.6 9.5 102 215-317 120-230 (276)
250 PF01189 Nol1_Nop2_Fmu: NOL1/N 94.0 0.052 1.1E-06 55.5 3.8 125 216-346 86-244 (283)
251 PF00398 RrnaAD: Ribosomal RNA 93.8 0.13 2.8E-06 51.7 6.3 100 193-309 16-123 (262)
252 COG4076 Predicted RNA methylas 93.7 0.088 1.9E-06 50.4 4.5 91 217-314 34-132 (252)
253 KOG2187 tRNA uracil-5-methyltr 93.6 0.085 1.8E-06 57.4 4.7 55 217-272 385-442 (534)
254 PF13578 Methyltransf_24: Meth 93.6 0.019 4.1E-07 49.1 -0.2 93 220-316 1-104 (106)
255 PF01861 DUF43: Protein of unk 93.4 1.8 3.9E-05 43.2 13.3 129 216-352 45-180 (243)
256 COG3129 Predicted SAM-dependen 93.2 0.22 4.8E-06 49.2 6.5 100 190-291 55-165 (292)
257 PF05971 Methyltransf_10: Prot 93.1 0.38 8.3E-06 49.5 8.5 94 191-287 81-185 (299)
258 COG5459 Predicted rRNA methyla 92.7 0.55 1.2E-05 49.1 8.8 99 215-320 113-228 (484)
259 TIGR01444 fkbM_fam methyltrans 92.3 0.2 4.3E-06 44.9 4.6 37 218-254 1-41 (143)
260 PF06962 rRNA_methylase: Putat 92.2 0.36 7.9E-06 44.2 6.1 109 238-349 2-124 (140)
261 PF10354 DUF2431: Domain of un 91.6 2.3 5E-05 40.0 11.1 119 222-350 3-152 (166)
262 PRK11524 putative methyltransf 90.9 0.59 1.3E-05 47.6 6.8 82 264-359 10-108 (284)
263 KOG1122 tRNA and rRNA cytosine 90.6 1.1 2.4E-05 47.9 8.5 128 214-348 240-398 (460)
264 KOG2793 Putative N2,N2-dimethy 89.7 1.9 4.1E-05 43.3 9.0 102 216-318 87-200 (248)
265 KOG2198 tRNA cytosine-5-methyl 89.6 2 4.4E-05 45.2 9.5 120 195-319 138-298 (375)
266 PF06859 Bin3: Bicoid-interact 88.9 0.25 5.4E-06 43.3 1.9 38 279-317 1-44 (110)
267 COG1064 AdhP Zn-dependent alco 87.6 1.3 2.8E-05 46.5 6.5 91 216-319 167-261 (339)
268 PF04989 CmcI: Cephalosporin h 87.5 0.97 2.1E-05 44.1 5.2 99 216-317 33-147 (206)
269 KOG4589 Cell division protein 87.4 5 0.00011 38.8 9.6 90 216-317 70-184 (232)
270 PF07091 FmrO: Ribosomal RNA m 86.8 3.2 7E-05 41.6 8.5 129 216-348 106-242 (251)
271 PF03269 DUF268: Caenorhabditi 85.7 0.98 2.1E-05 42.4 4.0 70 278-348 62-143 (177)
272 KOG1099 SAM-dependent methyltr 84.9 0.98 2.1E-05 44.7 3.7 111 216-341 42-183 (294)
273 KOG0822 Protein kinase inhibit 84.8 2.1 4.5E-05 47.1 6.5 126 216-343 368-504 (649)
274 PRK01747 mnmC bifunctional tRN 84.8 2.5 5.5E-05 48.2 7.7 59 278-348 165-225 (662)
275 COG2384 Predicted SAM-dependen 81.9 30 0.00066 34.2 12.6 119 218-350 19-143 (226)
276 cd08283 FDH_like_1 Glutathione 79.8 6.9 0.00015 41.3 8.2 99 216-317 185-306 (386)
277 PRK09424 pntA NAD(P) transhydr 79.3 7.2 0.00016 43.3 8.3 97 215-317 164-285 (509)
278 PF07757 AdoMet_MTase: Predict 78.4 2 4.3E-05 37.7 2.9 27 216-242 59-87 (112)
279 KOG1562 Spermidine synthase [A 77.1 5.7 0.00012 40.9 6.2 102 214-318 120-237 (337)
280 cd00315 Cyt_C5_DNA_methylase C 76.3 18 0.00039 36.7 9.7 125 218-351 2-144 (275)
281 PF01555 N6_N4_Mtase: DNA meth 75.2 4.3 9.3E-05 38.7 4.6 56 292-358 31-87 (231)
282 COG0286 HsdM Type I restrictio 74.4 23 0.00051 39.1 10.7 117 194-319 173-328 (489)
283 cd08254 hydroxyacyl_CoA_DH 6-h 74.3 10 0.00022 38.4 7.4 92 217-317 167-263 (338)
284 KOG2920 Predicted methyltransf 73.9 1.7 3.7E-05 44.2 1.5 42 279-321 196-238 (282)
285 PRK09880 L-idonate 5-dehydroge 72.8 11 0.00024 38.9 7.3 90 216-317 170-266 (343)
286 PF14740 DUF4471: Domain of un 72.7 6.4 0.00014 40.4 5.3 63 278-346 221-285 (289)
287 KOG2730 Methylase [General fun 72.4 1.9 4.2E-05 42.5 1.4 69 217-286 96-172 (263)
288 COG1568 Predicted methyltransf 70.4 19 0.00041 36.9 7.9 123 216-349 153-287 (354)
289 PRK10742 putative methyltransf 69.7 18 0.0004 36.4 7.7 68 218-287 91-172 (250)
290 TIGR00027 mthyl_TIGR00027 meth 69.6 1.3E+02 0.0028 30.3 15.2 102 216-318 82-198 (260)
291 PF05430 Methyltransf_30: S-ad 69.2 9.8 0.00021 34.1 5.1 61 278-350 49-111 (124)
292 KOG1596 Fibrillarin and relate 68.1 29 0.00063 34.9 8.5 96 217-318 158-262 (317)
293 PF03514 GRAS: GRAS domain fam 68.0 47 0.001 35.4 10.9 100 215-315 110-242 (374)
294 KOG2671 Putative RNA methylase 67.8 9.2 0.0002 40.2 5.2 103 216-318 209-355 (421)
295 KOG4058 Uncharacterized conser 67.3 26 0.00057 32.7 7.5 68 217-284 74-145 (199)
296 PHA01634 hypothetical protein 66.5 19 0.0004 32.8 6.2 32 215-246 28-62 (156)
297 COG1867 TRM1 N2,N2-dimethylgua 66.0 13 0.00029 39.4 6.0 98 216-318 53-155 (380)
298 PF02005 TRM: N2,N2-dimethylgu 64.4 8.4 0.00018 41.1 4.4 134 179-318 12-155 (377)
299 COG1565 Uncharacterized conser 63.8 7.9 0.00017 40.9 3.9 53 175-235 45-97 (370)
300 PF11899 DUF3419: Protein of u 61.8 30 0.00065 37.0 7.9 73 244-317 258-334 (380)
301 COG3510 CmcI Cephalosporin hyd 60.7 18 0.00038 35.2 5.3 99 215-318 69-181 (237)
302 KOG1227 Putative methyltransfe 60.1 4 8.6E-05 42.1 0.9 129 167-312 154-290 (351)
303 cd05188 MDR Medium chain reduc 60.0 30 0.00064 33.4 7.1 88 216-318 135-233 (271)
304 PF00107 ADH_zinc_N: Zinc-bind 59.8 7.9 0.00017 33.6 2.7 85 225-318 1-90 (130)
305 cd08245 CAD Cinnamyl alcohol d 59.2 35 0.00075 34.5 7.8 92 217-317 164-256 (330)
306 KOG2539 Mitochondrial/chloropl 58.3 30 0.00065 37.8 7.1 49 271-320 265-318 (491)
307 COG4301 Uncharacterized conser 57.9 63 0.0014 32.8 8.8 100 216-317 79-193 (321)
308 TIGR00561 pntA NAD(P) transhyd 57.1 17 0.00038 40.3 5.4 92 215-314 163-281 (511)
309 KOG1501 Arginine N-methyltrans 56.4 24 0.00053 38.3 6.0 66 193-261 46-114 (636)
310 PF07927 YcfA: YcfA-like prote 56.1 23 0.00049 26.6 4.4 31 331-361 1-31 (56)
311 TIGR02822 adh_fam_2 zinc-bindi 55.5 48 0.001 34.1 8.1 85 216-317 166-254 (329)
312 PRK15001 SAM-dependent 23S rib 54.7 1.4E+02 0.0029 32.0 11.4 95 218-317 47-142 (378)
313 cd08232 idonate-5-DH L-idonate 54.5 45 0.00098 33.9 7.7 93 216-317 166-262 (339)
314 KOG0024 Sorbitol dehydrogenase 51.4 52 0.0011 34.5 7.3 96 215-318 169-274 (354)
315 cd08234 threonine_DH_like L-th 51.3 59 0.0013 32.8 7.9 89 216-317 160-257 (334)
316 cd08230 glucose_DH Glucose deh 50.8 58 0.0013 33.6 7.9 91 216-317 173-269 (355)
317 TIGR00675 dcm DNA-methyltransf 50.1 47 0.001 34.4 7.0 122 219-349 1-139 (315)
318 TIGR03451 mycoS_dep_FDH mycoth 47.3 58 0.0013 33.7 7.3 92 216-317 177-276 (358)
319 TIGR02825 B4_12hDH leukotriene 46.6 83 0.0018 31.9 8.2 92 216-317 139-237 (325)
320 PF13051 DUF3912: Protein of u 46.4 4.1 8.9E-05 31.4 -1.1 8 506-513 58-65 (68)
321 PF07629 DUF1590: Protein of u 45.4 12 0.00027 24.7 1.1 19 120-138 5-23 (32)
322 TIGR03366 HpnZ_proposed putati 44.1 62 0.0013 32.3 6.6 89 216-317 121-218 (280)
323 KOG2651 rRNA adenine N-6-methy 43.6 28 0.0006 37.2 4.0 31 214-244 152-185 (476)
324 cd08237 ribitol-5-phosphate_DH 43.4 66 0.0014 33.2 6.9 87 216-317 164-256 (341)
325 PF00145 DNA_methylase: C-5 cy 42.4 61 0.0013 32.6 6.4 124 218-351 2-143 (335)
326 PF04445 SAM_MT: Putative SAM- 41.6 31 0.00068 34.4 3.9 71 217-287 77-159 (234)
327 KOG1253 tRNA methyltransferase 41.3 24 0.00053 38.7 3.3 98 216-318 110-217 (525)
328 TIGR01202 bchC 2-desacetyl-2-h 41.3 71 0.0015 32.4 6.7 81 217-317 146-231 (308)
329 PLN03154 putative allyl alcoho 41.3 99 0.0021 32.1 7.9 92 216-317 159-258 (348)
330 COG0604 Qor NADPH:quinone redu 41.1 56 0.0012 34.0 5.9 90 216-318 143-242 (326)
331 cd08255 2-desacetyl-2-hydroxye 40.4 1E+02 0.0022 30.2 7.5 91 216-317 98-190 (277)
332 TIGR00006 S-adenosyl-methyltra 40.0 79 0.0017 32.8 6.7 70 217-287 22-100 (305)
333 COG0270 Dcm Site-specific DNA 39.7 1.2E+02 0.0025 31.6 8.1 120 217-344 4-141 (328)
334 cd08239 THR_DH_like L-threonin 39.5 82 0.0018 32.1 6.9 90 216-317 164-262 (339)
335 cd08281 liver_ADH_like1 Zinc-d 38.4 79 0.0017 32.9 6.7 89 217-317 193-290 (371)
336 TIGR00853 pts-lac PTS system, 36.9 47 0.001 28.2 3.8 81 218-321 5-86 (95)
337 PF13334 DUF4094: Domain of un 35.5 20 0.00044 30.7 1.3 18 22-39 4-21 (95)
338 TIGR03201 dearomat_had 6-hydro 34.6 1.1E+02 0.0024 31.5 6.9 90 216-317 167-272 (349)
339 PRK10458 DNA cytosine methylas 33.5 5.6E+02 0.012 28.3 12.3 40 195-236 69-108 (467)
340 cd00401 AdoHcyase S-adenosyl-L 33.4 1.3E+02 0.0028 32.6 7.4 84 216-318 202-290 (413)
341 PTZ00357 methyltransferase; Pr 33.4 93 0.002 36.0 6.3 104 217-321 702-843 (1072)
342 PRK09548 PTS system ascorbate- 32.6 1.4E+02 0.003 34.0 7.5 58 215-287 505-562 (602)
343 COG1063 Tdh Threonine dehydrog 32.5 1.5E+02 0.0032 31.1 7.5 89 218-318 171-270 (350)
344 PRK10309 galactitol-1-phosphat 31.6 1.5E+02 0.0033 30.3 7.4 93 216-317 161-260 (347)
345 cd08261 Zn_ADH7 Alcohol dehydr 31.6 1.5E+02 0.0031 30.2 7.2 93 216-317 160-258 (337)
346 cd08294 leukotriene_B4_DH_like 31.5 1.4E+02 0.0031 29.8 7.1 91 216-317 144-241 (329)
347 COG0686 Ald Alanine dehydrogen 30.9 80 0.0017 33.1 4.9 93 216-314 168-265 (371)
348 cd05564 PTS_IIB_chitobiose_lic 30.8 1E+02 0.0022 26.0 4.9 79 222-322 4-83 (96)
349 PF01555 N6_N4_Mtase: DNA meth 30.1 61 0.0013 30.6 3.9 31 216-246 192-224 (231)
350 cd05278 FDH_like Formaldehyde 29.8 1.4E+02 0.0031 30.1 6.8 33 278-317 235-267 (347)
351 PLN02740 Alcohol dehydrogenase 29.6 1.5E+02 0.0033 31.0 7.1 90 216-317 199-300 (381)
352 PLN02586 probable cinnamyl alc 29.1 1E+02 0.0022 32.2 5.6 32 279-317 247-278 (360)
353 PF05711 TylF: Macrocin-O-meth 28.8 3.7E+02 0.008 27.1 9.2 86 262-357 158-247 (248)
354 cd05285 sorbitol_DH Sorbitol d 28.7 2E+02 0.0044 29.3 7.7 34 277-317 232-265 (343)
355 PRK11524 putative methyltransf 28.5 1.3E+02 0.0027 30.6 6.0 33 216-248 209-243 (284)
356 PF11253 DUF3052: Protein of u 28.3 2.1E+02 0.0046 25.9 6.5 73 278-355 44-116 (127)
357 PRK13699 putative methylase; P 27.7 2.1E+02 0.0045 28.2 7.2 33 216-248 164-198 (227)
358 cd08295 double_bond_reductase_ 27.2 2E+02 0.0043 29.3 7.3 92 216-317 152-251 (338)
359 COG0373 HemA Glutamyl-tRNA red 27.1 1.3E+02 0.0028 32.7 5.9 77 215-296 177-255 (414)
360 cd08236 sugar_DH NAD(P)-depend 27.0 2.2E+02 0.0047 28.9 7.5 92 217-317 161-258 (343)
361 PLN02827 Alcohol dehydrogenase 26.9 1.8E+02 0.0038 30.6 7.0 90 216-317 194-295 (378)
362 COG4093 Uncharacterized protei 26.4 52 0.0011 34.0 2.6 33 3-38 4-36 (338)
363 PF02254 TrkA_N: TrkA-N domain 26.4 1.1E+02 0.0024 25.8 4.5 99 224-345 4-112 (116)
364 cd08293 PTGR2 Prostaglandin re 26.2 1.8E+02 0.0039 29.5 6.8 87 217-317 156-254 (345)
365 PRK09590 celB cellobiose phosp 25.6 2.2E+02 0.0047 24.7 6.1 82 218-322 3-87 (104)
366 COG0863 DNA modification methy 25.4 1.5E+02 0.0033 29.6 5.9 52 296-360 78-129 (302)
367 cd08285 NADP_ADH NADP(H)-depen 24.9 2.3E+02 0.005 29.0 7.3 92 216-317 167-266 (351)
368 PF14881 Tubulin_3: Tubulin do 24.6 48 0.001 31.6 2.0 29 463-491 80-117 (180)
369 cd01842 SGNH_hydrolase_like_5 24.3 4E+02 0.0088 25.6 8.0 43 275-317 46-99 (183)
370 PF14258 DUF4350: Domain of un 24.3 2.3E+02 0.005 22.0 5.6 19 298-316 51-69 (70)
371 TIGR02819 fdhA_non_GSH formald 24.3 3E+02 0.0064 29.2 8.1 98 217-317 187-299 (393)
372 PRK10310 PTS system galactitol 24.2 1.4E+02 0.0029 25.2 4.5 54 219-287 5-58 (94)
373 PF02636 Methyltransf_28: Puta 23.5 60 0.0013 32.2 2.5 19 217-235 20-38 (252)
374 COG3414 SgaB Phosphotransferas 21.9 2.2E+02 0.0047 24.3 5.2 51 223-287 7-57 (93)
375 TIGR00692 tdh L-threonine 3-de 21.6 3.5E+02 0.0076 27.4 7.9 35 277-318 228-262 (340)
376 TIGR02818 adh_III_F_hyde S-(hy 21.5 2.8E+02 0.006 28.9 7.2 90 216-317 186-287 (368)
377 cd08298 CAD2 Cinnamyl alcohol 21.0 3.7E+02 0.008 26.9 7.8 85 217-317 169-256 (329)
378 PF11312 DUF3115: Protein of u 20.9 1.6E+02 0.0035 30.7 5.0 61 262-322 176-248 (315)
379 PF05781 MRVI1: MRVI1 protein; 20.8 87 0.0019 34.9 3.2 27 13-39 478-504 (538)
380 PLN02178 cinnamyl-alcohol dehy 20.8 1.7E+02 0.0038 30.7 5.5 90 216-317 179-273 (375)
381 KOG2352 Predicted spermine/spe 20.7 1.2E+02 0.0026 33.4 4.2 100 216-316 296-415 (482)
382 PRK09489 rsmC 16S ribosomal RN 20.6 5.6E+02 0.012 26.9 9.2 91 217-319 21-114 (342)
383 PF06557 DUF1122: Protein of u 20.3 2.4E+02 0.0052 26.7 5.5 47 297-347 66-120 (170)
384 cd08279 Zn_ADH_class_III Class 20.2 3.7E+02 0.0081 27.7 7.8 92 216-317 183-282 (363)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=3.3e-125 Score=986.63 Aligned_cols=415 Identities=56% Similarity=1.061 Sum_probs=395.6
Q ss_pred CcccCCChhHHhHhhcCCCcccccccccCCCCCCCCCCccCCCCCCCCCCCCCCCChhhhhhccCCCCccccccccccce
Q 010274 93 ELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWM 172 (514)
Q Consensus 93 ~~~pc~d~~~~~~~~~~~~~~~~~~~er~C~~~~~~~~Clv~~P~~y~~P~~wP~s~d~~W~~n~~~~~L~~~k~~q~Wv 172 (514)
|||||+|+.++.++ +.++++++|||||||+.+++++||||+|++|+.|++||+|||++|++|+||++|+++|+.|+||
T Consensus 1 dy~PC~D~~~~~~~--~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv 78 (506)
T PF03141_consen 1 DYIPCLDNSRAIKF--LLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWV 78 (506)
T ss_pred CCcCCCCHHHHHhh--ccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccce
Confidence 79999999986443 3589999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHH
Q 010274 173 VVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQ 252 (514)
Q Consensus 173 ~~~g~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~ 252 (514)
+.+|+.+.|||||++|.+|+++|+++|.++++.. ..++.++++||||||+|+|+++|++++|+++++++.+.++++
T Consensus 79 ~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~----~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~q 154 (506)
T PF03141_consen 79 RVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLI----KWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQ 154 (506)
T ss_pred eecCCEEEeCCCCccccCCHHHHHHHHHHHhhcc----ccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchh
Confidence 9999999999999999999999999999999863 345788999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCC-CChhHHHhH
Q 010274 253 IQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIW 331 (514)
Q Consensus 253 ~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~-~~~e~~~~~ 331 (514)
+|+|.+||+++.+.+...++|||++++||+|||+.|.+.|.++.+.+|.|++|+|||||+|+++.|+.+. ..++..+.|
T Consensus 155 vqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~ 234 (506)
T PF03141_consen 155 VQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEW 234 (506)
T ss_pred hhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHH
Confidence 9999999999999888899999999999999999999999999999999999999999999999999984 455667799
Q ss_pred HHHHHHHHhcCcEEEEEecceEEEeccCcchhhhccCCCCCCCCcCCCCCCchhhhhcccccccccccCcccccCCCCCC
Q 010274 332 NAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 411 (514)
Q Consensus 332 ~~l~~ll~~~Gf~~v~~~~~~~iw~Kp~~~~c~~~r~~~~~P~lC~~~~~~~~~wy~~L~~ci~~~~~~~~~~~~~~~~~ 411 (514)
+.++++++++||+++.++++++|||||.+++||..|+....|+||++++++|++||++|++||+++|+..+..+++++++
T Consensus 235 ~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~ 314 (506)
T PF03141_consen 235 NAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPK 314 (506)
T ss_pred HHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCC
Confidence 99999999999999999999999999999999999988889999998899999999999999999999766667899999
Q ss_pred CCCCCCCCCCCccc---cCCChhhHhHhHhhHHHHHHHHHHHhccccccCcccccccccccchhHHhhhcCCCceeeeec
Q 010274 412 WPARLTAPPPRLEE---VGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVA 488 (514)
Q Consensus 412 wp~rl~~~~~~~~~---~g~~~~~~~~d~~~W~~~v~~y~~~~~~~~~~~~~rnvmdm~a~~ggfaaal~~~~~wvmnvv 488 (514)
||+||+++|+||.. .|+++|+|++|+++|+++|++||+++...+++++|||||||||+||||||||+++||||||||
T Consensus 315 WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVV 394 (506)
T PF03141_consen 315 WPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVV 394 (506)
T ss_pred ChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEec
Confidence 99999999999998 899999999999999999999999888789999999999999999999999999999999999
Q ss_pred cCCCCCCcceeeccccccccccCCC
Q 010274 489 PVRMSARLKIIYDRGLIGTVHDWYA 513 (514)
Q Consensus 489 p~~~~~tl~~i~~rglig~~hdwce 513 (514)
|+.++|||+|||||||||+||||||
T Consensus 395 P~~~~ntL~vIydRGLIG~yhDWCE 419 (506)
T PF03141_consen 395 PVSGPNTLPVIYDRGLIGVYHDWCE 419 (506)
T ss_pred ccCCCCcchhhhhcccchhccchhh
Confidence 9999999999999999999999999
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.71 E-value=6.1e-17 Score=159.49 Aligned_cols=136 Identities=19% Similarity=0.333 Sum_probs=99.6
Q ss_pred CCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
++.+|||||||||.++..+++ ..|+++|+++.++..+...........+.++++|++.|||+|++||+|.+++ .+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~f-gl 129 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISF-GL 129 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeee-hh
Confidence 456899999999999999985 3567776666555444422221112238899999999999999999999999 59
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEe---CCC-----------------------------CCCChhHHHhH---HHHH
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSS---PEA-----------------------------YAHDPENRRIW---NAMY 335 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~---P~~-----------------------------~~~~~e~~~~~---~~l~ 335 (514)
+++++.+.+|+|++|||||||++++.. |.. |.++.+..+.+ +++.
T Consensus 130 rnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~ 209 (238)
T COG2226 130 RNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELK 209 (238)
T ss_pred hcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999999988744 111 11111111111 4788
Q ss_pred HHHHhcCcEEEEEecc
Q 010274 336 DLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 336 ~ll~~~Gf~~v~~~~~ 351 (514)
.+++++||..+..+..
T Consensus 210 ~~~~~~gf~~i~~~~~ 225 (238)
T COG2226 210 QMIEKAGFEEVRYENL 225 (238)
T ss_pred HHHHhcCceEEeeEee
Confidence 8899999998886654
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.69 E-value=5.8e-17 Score=160.10 Aligned_cols=101 Identities=24% Similarity=0.381 Sum_probs=73.7
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
+.+|||+|||||.++..+++ ..|+++|+++.++..+..+.......++.++++|++.+|+++++||+|+|++ .+
T Consensus 48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f-gl 126 (233)
T PF01209_consen 48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF-GL 126 (233)
T ss_dssp --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES--G
T ss_pred CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh-hH
Confidence 45899999999999998874 3577887777777666544433333478999999999999999999999999 58
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+.+++....|+|+.|+|||||++++.+
T Consensus 127 rn~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 127 RNFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp GG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 888999999999999999999999743
No 4
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.58 E-value=3.4e-14 Score=142.68 Aligned_cols=135 Identities=12% Similarity=0.113 Sum_probs=99.3
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHH--H-cCCCeEEEeecCCCCCCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFAL--E-RGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~--~-rg~~~~~~~~d~~~lp~~~~sFDlV~~s~ 287 (514)
..+|||||||+|.++..++. ..|+++|+++.++..+..+... . ...++.+..+|+..+|+++++||+|++++
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 36899999999999988874 2578887777766555422211 1 12367889999999999999999999888
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCC-----------------------Chh-------HHH---hHHHH
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH-----------------------DPE-------NRR---IWNAM 334 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~-----------------------~~e-------~~~---~~~~l 334 (514)
++|+.+++..+++|+.|+|||||++++.+...... ..+ ... ..+++
T Consensus 154 -~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el 232 (261)
T PLN02233 154 -GLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEEL 232 (261)
T ss_pred -ccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHH
Confidence 58889999999999999999999999876321100 000 001 12478
Q ss_pred HHHHHhcCcEEEEEecc
Q 010274 335 YDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 335 ~~ll~~~Gf~~v~~~~~ 351 (514)
.++++++||+.+.....
T Consensus 233 ~~ll~~aGF~~~~~~~~ 249 (261)
T PLN02233 233 EKLALEAGFSSAKHYEI 249 (261)
T ss_pred HHHHHHCCCCEEEEEEc
Confidence 89999999998876553
No 5
>PLN02244 tocopherol O-methyltransferase
Probab=99.57 E-value=3.5e-14 Score=147.83 Aligned_cols=134 Identities=19% Similarity=0.361 Sum_probs=100.3
Q ss_pred CCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
...+|||||||+|.++..|++ ..|+++|+++.++..+. +.+.+.+. ++.+.++|...+|+++++||+|++.. .
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~-~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~-~ 195 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARAN-ALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME-S 195 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHH-HHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC-c
Confidence 346899999999999999885 46888888877665554 33334443 57899999999999999999999887 5
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCCCC--CC----C-hhHH-------H--------hHHHHHHHHHhcCcEEEE
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAY--AH----D-PENR-------R--------IWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~--~~----~-~e~~-------~--------~~~~l~~ll~~~Gf~~v~ 347 (514)
++|+++...+++++.|+|||||+|++++.... .. . .... . .-+++.++++++||..+.
T Consensus 196 ~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~ 275 (340)
T PLN02244 196 GEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIK 275 (340)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeE
Confidence 88889999999999999999999999764210 00 0 0000 0 124777889999998876
Q ss_pred Eec
Q 010274 348 KKD 350 (514)
Q Consensus 348 ~~~ 350 (514)
.++
T Consensus 276 ~~d 278 (340)
T PLN02244 276 TED 278 (340)
T ss_pred eee
Confidence 554
No 6
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.56 E-value=5.3e-15 Score=122.98 Aligned_cols=93 Identities=29% Similarity=0.488 Sum_probs=73.8
Q ss_pred EEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccccccccchH
Q 010274 220 LDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 297 (514)
Q Consensus 220 LDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~ 297 (514)
||+|||+|.++..|++. .+.++...|+++.+++.++++.. ...+...+...+|+++++||+|++.. +++|.++..
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~-~~~~~~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNS-VLHHLEDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEES-HGGGSSHHH
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcccccccccccccc-ceeeccCHH
Confidence 89999999999999875 23444445666667777777643 34588899999999999999999888 688888899
Q ss_pred HHHHHHHhhCCCCeEEEE
Q 010274 298 ILLLELDRLLRPGGYFVY 315 (514)
Q Consensus 298 ~lL~el~RvLrPGG~lvi 315 (514)
.+++++.|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 7
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.55 E-value=1e-14 Score=133.46 Aligned_cols=122 Identities=29% Similarity=0.520 Sum_probs=89.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
...+|||||||+|.++..|+.. .++++|+++.++. . ........+....+.++++||+|+|+. +++|
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~-~l~~ 90 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIE-----K-----RNVVFDNFDAQDPPFPDGSFDLIICND-VLEH 90 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHH-----H-----TTSEEEEEECHTHHCHSSSEEEEEEES-SGGG
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHh-----h-----hhhhhhhhhhhhhhccccchhhHhhHH-HHhh
Confidence 3468999999999999999864 5666666655443 3 223333333344556778999999997 7999
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeCCCCC----------CChh---HHH--hHHHHHHHHHhcCcEEEE
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYA----------HDPE---NRR--IWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P~~~~----------~~~e---~~~--~~~~l~~ll~~~Gf~~v~ 347 (514)
++++..+|+++.++|||||+++++++.... .... ... .-+++..+++++||++++
T Consensus 91 ~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 91 LPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp SSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred cccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999986421 1110 000 125899999999999886
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.55 E-value=6e-14 Score=141.06 Aligned_cols=158 Identities=18% Similarity=0.226 Sum_probs=108.1
Q ss_pred CCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHc---
Q 010274 186 THFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER--- 259 (514)
Q Consensus 186 ~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~r--- 259 (514)
..++.+.....+.+.+.+... +..+|||||||+|..+..|+. ..|+++|+++.++ +.|+++
T Consensus 31 ~~~~~gg~~~~~~~l~~l~l~--------~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~-----~~a~~~~~~ 97 (263)
T PTZ00098 31 DYISSGGIEATTKILSDIELN--------ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMV-----NIAKLRNSD 97 (263)
T ss_pred CCCCCCchHHHHHHHHhCCCC--------CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHH-----HHHHHHcCc
Confidence 344555444555566555432 235899999999999988874 3566666655444 444443
Q ss_pred CCCeEEEeecCCCCCCCCCCceEEEeccccccccc--chHHHHHHHHhhCCCCeEEEEEeCCCCC--CChhHHH------
Q 010274 260 GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ--RDGILLLELDRLLRPGGYFVYSSPEAYA--HDPENRR------ 329 (514)
Q Consensus 260 g~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~--d~~~lL~el~RvLrPGG~lvis~P~~~~--~~~e~~~------ 329 (514)
...+.+...|+...++++++||+|++..+ ++|.. +...+++++.++|||||+|+++++.... .......
T Consensus 98 ~~~i~~~~~D~~~~~~~~~~FD~V~s~~~-l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~ 176 (263)
T PTZ00098 98 KNKIEFEANDILKKDFPENTFDMIYSRDA-ILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKR 176 (263)
T ss_pred CCceEEEECCcccCCCCCCCeEEEEEhhh-HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhc
Confidence 23577888888888999899999998774 44553 6788999999999999999998753211 0111110
Q ss_pred -----hHHHHHHHHHhcCcEEEEEecceEEEec
Q 010274 330 -----IWNAMYDLLKSMCWKIVSKKDQTVIWAK 357 (514)
Q Consensus 330 -----~~~~l~~ll~~~Gf~~v~~~~~~~iw~K 357 (514)
.-.++.++++++||+.+..++.+..|..
T Consensus 177 ~~~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~ 209 (263)
T PTZ00098 177 KYTLIPIQEYGDLIKSCNFQNVVAKDISDYWLE 209 (263)
T ss_pred CCCCCCHHHHHHHHHHCCCCeeeEEeCcHHHHH
Confidence 1147889999999999988776554443
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.53 E-value=3.5e-14 Score=146.48 Aligned_cols=136 Identities=14% Similarity=0.148 Sum_probs=102.0
Q ss_pred CCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
...+|||||||+|.++..|+. ..|+++|+++.++..+... +...+ .++.+..++++.+++++++||+|+|.. ++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~-vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLE-VI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhh-HH
Confidence 346899999999999998885 4678887777666555422 22222 257788888888888888999999888 79
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCC---------------ChhHHH------hHHHHHHHHHhcCcEEEEEe
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH---------------DPENRR------IWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~---------------~~e~~~------~~~~l~~ll~~~Gf~~v~~~ 349 (514)
+|+.++..+++++.++|||||.++++++..... .+.... .-+++..+++++||++++..
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 999999999999999999999999987643110 000001 12589999999999998775
Q ss_pred cce
Q 010274 350 DQT 352 (514)
Q Consensus 350 ~~~ 352 (514)
...
T Consensus 289 G~~ 291 (322)
T PLN02396 289 GFV 291 (322)
T ss_pred eeE
Confidence 543
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.52 E-value=3.1e-13 Score=132.41 Aligned_cols=102 Identities=21% Similarity=0.263 Sum_probs=81.2
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||+|||+|.++..+++ ..|+++|+++.++..+....+.....++.+..+|...+++++++||+|++.. .+
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~-~l 124 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF-GL 124 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec-cc
Confidence 36899999999999988874 3678888877666555433322222357788888888888888999999887 58
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
++.++...+++++.++|+|||++++.++
T Consensus 125 ~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 125 RNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 8889999999999999999999998764
No 11
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.51 E-value=3.8e-14 Score=138.22 Aligned_cols=102 Identities=21% Similarity=0.371 Sum_probs=88.6
Q ss_pred CCeEEEECCCCchHHHHHh--cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La--~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..+|||||||-|.++..|| ++.|+|+|++...+..+. ..|.+.++.+.+....++++....++||+|+|.. +++|+
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmE-VlEHv 137 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCME-VLEHV 137 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhh-HHHcc
Confidence 3689999999999999999 468889988887776666 5566777777788887888876668999999999 79999
Q ss_pred cchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 294 QRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
++++.+++.+.+++||||.+++++++
T Consensus 138 ~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 138 PDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred CCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 99999999999999999999999975
No 12
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.47 E-value=7.9e-13 Score=131.44 Aligned_cols=99 Identities=24% Similarity=0.439 Sum_probs=81.7
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..+|||+|||+|.++..|+. ..++++|++ +.+++.++++.....+..+|.+.+|+++++||+|+++. .++|.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s-----~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~-~l~~~ 116 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGSQVTALDLS-----PPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNL-AVQWC 116 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCCeEEEEECC-----HHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECc-hhhhc
Confidence 46899999999999988875 355666554 55566777665555678889999999989999999887 68999
Q ss_pred cchHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 294 QRDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
.++..+|.++.++|||||.++++++..
T Consensus 117 ~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 117 GNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 999999999999999999999987643
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.47 E-value=4.2e-13 Score=134.01 Aligned_cols=134 Identities=20% Similarity=0.270 Sum_probs=97.8
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCC-CCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP-YPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp-~~~~sFDlV~~s~~~l 290 (514)
..+|||+|||+|.++..|+. ..|+++|+++.++..+. +.+.+.+. ++.+..++...++ +.+++||+|+|.. ++
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~-~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~-vl 122 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAK-QAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA-VL 122 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHH-HHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh-HH
Confidence 46899999999999999985 46778887777766554 33333343 4677778876664 5668999999887 68
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCC---------Ch----------------hHHHhHHHHHHHHHhcCcEE
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH---------DP----------------ENRRIWNAMYDLLKSMCWKI 345 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~---------~~----------------e~~~~~~~l~~ll~~~Gf~~ 345 (514)
+|+.++..++.++.++|||||++++...+.... .. .....-+++.++++++||++
T Consensus 123 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~ 202 (255)
T PRK11036 123 EWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQI 202 (255)
T ss_pred HhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeE
Confidence 999999999999999999999999865432100 00 00001257889999999999
Q ss_pred EEEecc
Q 010274 346 VSKKDQ 351 (514)
Q Consensus 346 v~~~~~ 351 (514)
+.....
T Consensus 203 ~~~~gi 208 (255)
T PRK11036 203 MGKTGV 208 (255)
T ss_pred eeeeeE
Confidence 876654
No 14
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.47 E-value=4.6e-13 Score=133.70 Aligned_cols=95 Identities=23% Similarity=0.420 Sum_probs=76.3
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+|||||||+|.++..|+.. .|+++|++ +.+++.|++++ +.+..+|+..++ ++++||+|+|+. ++|
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s-----~~~~~~a~~~~--~~~~~~d~~~~~-~~~~fD~v~~~~-~l~ 100 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSS-----PEMVAAARERG--VDARTGDVRDWK-PKPDTDVVVSNA-ALQ 100 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECC-----HHHHHHHHhcC--CcEEEcChhhCC-CCCCceEEEEeh-hhh
Confidence 368999999999999998853 56666555 45556666654 567778887775 557999999888 689
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
|++++..+++++.++|||||++++..+.
T Consensus 101 ~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 101 WVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 9999999999999999999999997653
No 15
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.44 E-value=1e-12 Score=142.54 Aligned_cols=135 Identities=24% Similarity=0.327 Sum_probs=97.8
Q ss_pred CCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
...+|||||||+|.++..|+. ..|+|+|+++.++..+..+ +.....++.+..+|...+++++++||+|+|.. +++
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~-~l~ 343 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALER-AIGRKCSVEFEVADCTKKTYPDNSFDVIYSRD-TIL 343 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-hhcCCCceEEEEcCcccCCCCCCCEEEEEECC-ccc
Confidence 346899999999999888874 3577777776555444322 22223457888899888888888999999887 688
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCCCCC--ChhHH----------HhHHHHHHHHHhcCcEEEEEecc
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAH--DPENR----------RIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~--~~e~~----------~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
|++++..++.++.|+|||||.++++++..... ..... ..-.++.++++++||.++..++.
T Consensus 344 h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 344 HIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAEDR 415 (475)
T ss_pred ccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeecc
Confidence 89999999999999999999999987432110 11100 01246788899999988865544
No 16
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.43 E-value=7.4e-13 Score=129.51 Aligned_cols=100 Identities=23% Similarity=0.283 Sum_probs=84.0
Q ss_pred CCCeEEEECCCCchHHHHHhc----------CCCccccCChhhhhHHHHHHHHHcCC----CeEEEeecCCCCCCCCCCc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS----------HDIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGTKRLPYPSRSF 280 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~----------~~V~gvdis~~dis~a~~~~A~~rg~----~~~~~~~d~~~lp~~~~sF 280 (514)
...++||++||||.++..+.+ .+|+..|+++.++..+. +.|.+++. .+.++.+|+++|||++++|
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk-qRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK-QRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH-HHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 347899999999999888773 46888998888887666 44544543 2678888999999999999
Q ss_pred eEEEecccccccccchHHHHHHHHhhCCCCeEEEEE
Q 010274 281 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 281 DlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis 316 (514)
|+.+.++ -+....+++..|+|++|+|||||+|.+-
T Consensus 179 D~yTiaf-GIRN~th~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 179 DAYTIAF-GIRNVTHIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred eeEEEec-ceecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 9999888 5888899999999999999999999863
No 17
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.42 E-value=3.9e-12 Score=132.05 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=97.8
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHc--CCCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~r--g~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
..+|||||||+|.++..++. ..++++|+++.++. .|+++ ..++.+..+|...+++++++||+|+++. +
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~-----~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~-~ 187 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLA-----KAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAG-S 187 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHH-----HHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcC-h
Confidence 35899999999998888764 35667766655544 44333 2356778889899999889999999877 6
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCCCC--CCChhHH------HhHHHHHHHHHhcCcEEEEEecceEEE
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAY--AHDPENR------RIWNAMYDLLKSMCWKIVSKKDQTVIW 355 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~--~~~~e~~------~~~~~l~~ll~~~Gf~~v~~~~~~~iw 355 (514)
+++.+++..+|+++.|+|||||.+++..+... ....... ...+++.++++++||+.++.++....|
T Consensus 188 L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~ 261 (340)
T PLN02490 188 IEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKW 261 (340)
T ss_pred hhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhh
Confidence 88888999999999999999999988764221 0000000 123678899999999999876654433
No 18
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.42 E-value=9.9e-13 Score=136.02 Aligned_cols=134 Identities=22% Similarity=0.189 Sum_probs=97.4
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHH-HcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFAL-ERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~-~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
+++|||||||+|.++..+++. .|+|+|.++.++.+....... ....++.+..++++.+|+ +++||+|+|.. +++
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~-vl~ 200 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMG-VLY 200 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECC-hhh
Confidence 368999999999999998852 488998887766433211111 113467888888899988 68999999877 688
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCCCC-----CChhH----------HHhHHHHHHHHHhcCcEEEEEecc
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYA-----HDPEN----------RRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~~~-----~~~e~----------~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
|..++..+|++++++|+|||.+++.+..... ..+.. ...-.++.++++++||+.++....
T Consensus 201 H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 201 HRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDV 275 (322)
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeC
Confidence 8999999999999999999999986421100 00000 011257889999999998876654
No 19
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.41 E-value=2.8e-12 Score=129.01 Aligned_cols=132 Identities=17% Similarity=0.195 Sum_probs=95.9
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
..+|||||||+|..+..++. ..|+++|+++.++..+.... ...+ .++.+..++.+.+++++++||+|++.. +
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~-~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~-v 155 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANA-RKAGYTNVEFRLGEIEALPVADNSVDVIISNC-V 155 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHH-HHcCCCCEEEEEcchhhCCCCCCceeEEEEcC-c
Confidence 46899999999987665542 24788888877666555332 2333 357788889989999888999999765 7
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHH--------------HhHHHHHHHHHhcCcEEEEEe
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR--------------RIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~--------------~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
+++.++...+++++.|+|||||+|++++........... ....++.++++++||..+...
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~ 229 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQ 229 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEE
Confidence 888888889999999999999999997632211111110 123478889999999887553
No 20
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.40 E-value=1.7e-12 Score=124.93 Aligned_cols=136 Identities=16% Similarity=0.276 Sum_probs=92.2
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
.+|||+|||+|.++..|++ ..|+++|+++.++..+.... ...+. ++.+.+.|...++++ ++||+|+|+. ++||.
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~-~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~-~~~~~ 108 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIK-AAENLDNLHTAVVDLNNLTFD-GEYDFILSTV-VLMFL 108 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-HHcCCCcceEEecChhhCCcC-CCcCEEEEec-chhhC
Confidence 5799999999999999985 46888988887776665333 33343 467777887777765 6799999987 46665
Q ss_pred c--chHHHHHHHHhhCCCCeEEEEEe-CC--CCC--CChhHHHhHHHHHHHHHhcCcEEEEEecceEEEec
Q 010274 294 Q--RDGILLLELDRLLRPGGYFVYSS-PE--AYA--HDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAK 357 (514)
Q Consensus 294 ~--d~~~lL~el~RvLrPGG~lvis~-P~--~~~--~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~~~iw~K 357 (514)
. +...++.++.++|||||++++.. .. ... ......-.-.++.+.++ ||+++........+++
T Consensus 109 ~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~~~~~~~~ 177 (197)
T PRK11207 109 EAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNEDVGELHR 177 (197)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeCCHHhhcc
Confidence 4 34679999999999999965432 11 110 00000001135666666 8998887665555544
No 21
>PRK08317 hypothetical protein; Provisional
Probab=99.39 E-value=7.7e-12 Score=121.59 Aligned_cols=149 Identities=21% Similarity=0.299 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEe
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGV 267 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~ 267 (514)
..|.+.+.+.+.. ....+|||+|||+|.++..++. ..++++|+++..+..+... ......++.+..
T Consensus 5 ~~~~~~~~~~~~~--------~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~ 75 (241)
T PRK08317 5 RRYRARTFELLAV--------QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVR 75 (241)
T ss_pred HHHHHHHHHHcCC--------CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEe
Confidence 3455555555543 2336899999999999998874 2467777666544333322 111244677888
Q ss_pred ecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCC----C-Ch----hHHHhH-------
Q 010274 268 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA----H-DP----ENRRIW------- 331 (514)
Q Consensus 268 ~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~----~-~~----e~~~~~------- 331 (514)
.|...+++++++||+|++.. ++++..++..+++++.++|||||++++..+.... . .. +....|
T Consensus 76 ~d~~~~~~~~~~~D~v~~~~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
T PRK08317 76 GDADGLPFPDGSFDAVRSDR-VLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADP 154 (241)
T ss_pred cccccCCCCCCCceEEEEec-hhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCC
Confidence 88888888888999999888 6888899999999999999999999998764211 0 00 111111
Q ss_pred ---HHHHHHHHhcCcEEEEEecc
Q 010274 332 ---NAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 332 ---~~l~~ll~~~Gf~~v~~~~~ 351 (514)
..+.++++++||..+..+..
T Consensus 155 ~~~~~~~~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 155 WLGRRLPGLFREAGLTDIEVEPY 177 (241)
T ss_pred cHHHHHHHHHHHcCCCceeEEEE
Confidence 35778899999987765443
No 22
>PRK05785 hypothetical protein; Provisional
Probab=99.37 E-value=2e-12 Score=127.24 Aligned_cols=94 Identities=20% Similarity=0.291 Sum_probs=73.1
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
..+|||||||||.++..+++. .|+|+|+++ .|++.|+++. .+.+++++.+|+++++||+|++++ .+++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~-----~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~-~l~~ 122 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAE-----NMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSF-ALHA 122 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCH-----HHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecC-hhhc
Confidence 358999999999999998864 566665554 4555555542 356788999999999999999988 5889
Q ss_pred ccchHHHHHHHHhhCCCCe-EEEEEeC
Q 010274 293 LQRDGILLLELDRLLRPGG-YFVYSSP 318 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG-~lvis~P 318 (514)
.++++.+++|+.|+|||.+ .+-++.|
T Consensus 123 ~~d~~~~l~e~~RvLkp~~~ile~~~p 149 (226)
T PRK05785 123 SDNIEKVIAEFTRVSRKQVGFIAMGKP 149 (226)
T ss_pred cCCHHHHHHHHHHHhcCceEEEEeCCC
Confidence 9999999999999999954 3334433
No 23
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.37 E-value=4.6e-12 Score=130.35 Aligned_cols=132 Identities=17% Similarity=0.160 Sum_probs=94.0
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHH---cCCCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE---RGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~---rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
.++|||||||+|.++..++.. .|+|+|.++.++.+.. .++. ....+.+...++..++.. .+||+|+|+. +
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~--~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~g-v 197 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFE--AVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMG-V 197 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHH--HHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcc-h
Confidence 368999999999998887742 4788888876654421 2221 123456677778888764 4899999887 6
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCCCCCC-----ChhH-H---------HhHHHHHHHHHhcCcEEEEEecc
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH-----DPEN-R---------RIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~-----~~e~-~---------~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
++|..++..+|++++++|||||.|++.+...... .+.. . ..-.++..+++++||+.++..+.
T Consensus 198 L~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 198 LYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDV 274 (314)
T ss_pred hhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEec
Confidence 8889999999999999999999999865311000 0000 0 01257889999999999976654
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.37 E-value=1.7e-12 Score=119.37 Aligned_cols=101 Identities=23% Similarity=0.409 Sum_probs=81.8
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCC--CCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp--~~~~sFDlV~~s~ 287 (514)
..+|||+|||+|.++..|++ .+++++|+++.++..+. +.+++.+. ++.+.+.|+.+++ ++ +.||+|++..
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~-~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAK-KRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHH-HHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhh-cccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 46899999999999999982 45788887777776555 33333444 5899999988877 66 7999999887
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
++++..++..+++++.++|++||.+++..+.
T Consensus 82 -~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 -VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 6889999999999999999999999998765
No 25
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.35 E-value=2.8e-12 Score=110.91 Aligned_cols=100 Identities=24% Similarity=0.353 Sum_probs=75.5
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHH-cCCCeEEEeecC-CCCCCCCCCceEEEecc-cc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLGT-KRLPYPSRSFELAHCSR-CR 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~-rg~~~~~~~~d~-~~lp~~~~sFDlV~~s~-~~ 289 (514)
.+|||||||+|.++..+++ ..|+++|+++..+..++.+.... ...++.+...|. ...... +.||+|++.. +.
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGFTL 81 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSGSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCCcc
Confidence 5899999999999999985 46888988888777666444232 245788898888 334433 5699999887 32
Q ss_pred cccc--cchHHHHHHHHhhCCCCeEEEEEe
Q 010274 290 IDWL--QRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 290 l~~~--~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
.++. ++...+++++.+.|+|||+|++.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2222 445779999999999999999975
No 26
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.35 E-value=8.1e-12 Score=120.09 Aligned_cols=137 Identities=15% Similarity=0.260 Sum_probs=92.8
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
.+|||+|||+|.++.+|+. ..|+++|+++.++..+. +.+...+.++.+...|....+++ ++||+|+|+. ++++..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~-~~~~~~ 108 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVL-DMKARENLPLRTDAYDINAAALN-EDYDFIFSTV-VFMFLQ 108 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHHHhCCCceeEeccchhcccc-CCCCEEEEec-ccccCC
Confidence 5799999999999999985 46888888887776655 34445566666777776666654 5899999887 466653
Q ss_pred --chHHHHHHHHhhCCCCeEEEEEe-CC--CCCC--ChhHHHhHHHHHHHHHhcCcEEEEEecceEEEecc
Q 010274 295 --RDGILLLELDRLLRPGGYFVYSS-PE--AYAH--DPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKP 358 (514)
Q Consensus 295 --d~~~lL~el~RvLrPGG~lvis~-P~--~~~~--~~e~~~~~~~l~~ll~~~Gf~~v~~~~~~~iw~Kp 358 (514)
+...+++++.++|||||++++.. .. .+.. .........++.++++ +|+++........|++.
T Consensus 109 ~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~~~~~~ 177 (195)
T TIGR00477 109 AGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVGELHAT 177 (195)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeeccccccccc
Confidence 34679999999999999966542 11 1000 0011112346666665 48888877655555443
No 27
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.33 E-value=8.6e-12 Score=121.61 Aligned_cols=132 Identities=19% Similarity=0.258 Sum_probs=93.5
Q ss_pred eEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 218 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
+|||||||+|.++..+++ ..++++|+++..+..+... ..+.+. .+.+...|....+++ ++||+|++.. +++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~-~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~-~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRER-IRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFE-VIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHhcCCCcceEEEecccccCCCC-CCCCEeehHH-HHH
Confidence 699999999999988874 3567777766555444422 223333 457777787666665 5899999877 688
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCC--CCCCh-----hHHHhHHHHHHHHHhcCcEEEEEecce
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEA--YAHDP-----ENRRIWNAMYDLLKSMCWKIVSKKDQT 352 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~--~~~~~-----e~~~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (514)
|+.+...+++++.++|||||++++.++.. +.... .......++.+++++.||+++...+..
T Consensus 79 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~ 146 (224)
T smart00828 79 HIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDAS 146 (224)
T ss_pred hCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECc
Confidence 88889999999999999999999987521 11000 001122467789999999998776643
No 28
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.33 E-value=6.7e-12 Score=126.67 Aligned_cols=96 Identities=27% Similarity=0.455 Sum_probs=73.6
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
.+|||||||+|.++..|+.. ...+..+.+.|+++.+++.|.++..++.+.++|...+|+++++||+|++... +
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~-----~ 161 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA-----P 161 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC-----C
Confidence 57999999999999988742 1111223334555666677777777788999999999999999999997652 1
Q ss_pred chHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 295 RDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 295 d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
..+.++.|+|||||+|++..|..
T Consensus 162 ---~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 162 ---CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred ---CCHHHHHhhccCCCEEEEEeCCC
Confidence 24689999999999999998765
No 29
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.32 E-value=1.9e-11 Score=116.99 Aligned_cols=120 Identities=19% Similarity=0.145 Sum_probs=91.9
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||||||+|.++..++. ..|+++|+++.++..+... +++.+. ++.+..++...++. +++||+|+|..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~-~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~--- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREV-AAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA--- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHH-HHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc---
Confidence 46899999999998888763 4788998888777666633 334444 47888888888776 67999999754
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
..+...+++++.++|||||++++..+... -.++..+.+..||.+.+....
T Consensus 121 --~~~~~~~l~~~~~~LkpGG~lv~~~~~~~---------~~~l~~~~~~~~~~~~~~~~~ 170 (187)
T PRK00107 121 --VASLSDLVELCLPLLKPGGRFLALKGRDP---------EEEIAELPKALGGKVEEVIEL 170 (187)
T ss_pred --ccCHHHHHHHHHHhcCCCeEEEEEeCCCh---------HHHHHHHHHhcCceEeeeEEE
Confidence 24567899999999999999999765432 346788889999987765443
No 30
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.32 E-value=6.6e-12 Score=125.20 Aligned_cols=98 Identities=22% Similarity=0.366 Sum_probs=79.2
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+|||||||+|.++..++. ..|+++|++ +.+++.|+++..++.+..+|+..+. ++++||+|+|+. .++
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s-----~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~-~l~ 104 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSS-----PAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANA-SLQ 104 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECC-----HHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEcc-Chh
Confidence 46899999999999998885 346666555 4555666666666788888877664 446999999888 689
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
|+.+...+++++.++|||||.+++..|..
T Consensus 105 ~~~d~~~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 105 WLPDHLELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 99999999999999999999999987654
No 31
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.32 E-value=2.6e-11 Score=118.13 Aligned_cols=99 Identities=26% Similarity=0.453 Sum_probs=79.4
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||||||+|.++..++.. .++++|+++ .+++.++++. .++.+...|....++++++||+|+++. ++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~-----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~-~l 108 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISA-----GMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNL-AL 108 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChH-----HHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhh-hh
Confidence 368999999999999988853 346665554 4445555443 256788888888888889999999888 68
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
+|..++..++.++.++|+|||.++++.+..
T Consensus 109 ~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 109 QWCDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred hhccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 999999999999999999999999987643
No 32
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.31 E-value=2.8e-11 Score=119.56 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=75.2
Q ss_pred CeEEEECCCCchHHHHHhc------CCCccccCChhhhhHHHHHHHHHc-CCCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 217 RNVLDVGCGVASFGAYLLS------HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~------~~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
.+|||||||+|.++..++. ..++++|+++.++..+..+..... ..++.+..+|...++++ .+|+|+++. +
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~-~ 131 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF-T 131 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec-c
Confidence 5799999999999888764 347788777766655543222111 23578888898888865 489999887 5
Q ss_pred cccccc--hHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 290 IDWLQR--DGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 290 l~~~~d--~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
+||..+ ...+++++.|+|||||.|+++++.
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 777753 467999999999999999998753
No 33
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.31 E-value=1.5e-11 Score=122.45 Aligned_cols=100 Identities=18% Similarity=0.254 Sum_probs=76.4
Q ss_pred CCeEEEECCCCchHHHHHhc------CCCccccCChhhhhHHHHHHHHHc-CCCeEEEeecCCCCCCCCCCceEEEeccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS------HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~------~~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
..+|||||||+|..+..++. ..++++|+++.++..+..+.+... ..++.+..+++..++++ .+|+|+++.
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~- 133 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF- 133 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh-
Confidence 35899999999999887764 367888887777766654443322 12578888888888765 499999877
Q ss_pred ccccccch--HHHHHHHHhhCCCCeEEEEEeC
Q 010274 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 289 ~l~~~~d~--~~lL~el~RvLrPGG~lvis~P 318 (514)
++|++++. ..+++++.++|||||.|++++.
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 57777543 5699999999999999999874
No 34
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.28 E-value=1.8e-12 Score=110.93 Aligned_cols=92 Identities=28% Similarity=0.525 Sum_probs=68.7
Q ss_pred EEEECCCCchHHHHHhc-------CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 219 VLDVGCGVASFGAYLLS-------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 219 VLDIGCGtG~~a~~La~-------~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
|||+|||+|..+..++. ..++++|+++.++..+.. ...+.+.++.+.+.|..++++.+++||+|+|+.++++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~-~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKK-RFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHH-HSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHH-hchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 79999999999998874 356677666665544442 2222457889999999999988889999999776677
Q ss_pred cccch--HHHHHHHHhhCCCCe
Q 010274 292 WLQRD--GILLLELDRLLRPGG 311 (514)
Q Consensus 292 ~~~d~--~~lL~el~RvLrPGG 311 (514)
|..+. ..+++++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 76543 669999999999998
No 35
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.28 E-value=1.9e-11 Score=120.84 Aligned_cols=168 Identities=15% Similarity=0.241 Sum_probs=116.4
Q ss_pred ccceeccCceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChh
Q 010274 169 QHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPN 246 (514)
Q Consensus 169 q~Wv~~~g~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~ 246 (514)
-+|+...++...+-|.|.+|-...+++.+.+..--. ...+..+..++||||+|.|..+..|+.. +|.+.
T Consensus 52 L~~f~S~T~iNG~LgRG~MFvfS~~Q~~~LL~~~~~----~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aT----- 122 (265)
T PF05219_consen 52 LSWFMSKTDINGILGRGSMFVFSEEQFRKLLRISGF----SWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYAT----- 122 (265)
T ss_pred HHHHHhHHhHhhhhcCCcEEEecHHHHHHHhhhhcc----CCCCcccCCceEEecCCCcHHHHHHHhhcceEEee-----
Confidence 345555667778889999999999888776552211 1122335578999999999999999863 45555
Q ss_pred hhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEe--CC-----
Q 010274 247 DVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS--PE----- 319 (514)
Q Consensus 247 dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~--P~----- 319 (514)
++|..|+..-+++|..+ .+..++.-.+.+||+|.|.+ ++....+|..+|+++++.|+|+|+++++. |-
T Consensus 123 E~S~~Mr~rL~~kg~~v----l~~~~w~~~~~~fDvIscLN-vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE 197 (265)
T PF05219_consen 123 EASPPMRWRLSKKGFTV----LDIDDWQQTDFKFDVISCLN-VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVE 197 (265)
T ss_pred cCCHHHHHHHHhCCCeE----EehhhhhccCCceEEEeehh-hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEE
Confidence 55566667777888643 23333443456899999999 79999999999999999999999999754 21
Q ss_pred ----CCCCChhHH----HhH----HHHHHHHHhcCcEEEEEec
Q 010274 320 ----AYAHDPENR----RIW----NAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 320 ----~~~~~~e~~----~~~----~~l~~ll~~~Gf~~v~~~~ 350 (514)
...+..+.. ..| ..+.++++.+||+++.+..
T Consensus 198 ~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 198 FGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred cCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 011111111 123 3555889999999886543
No 36
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.27 E-value=2.4e-11 Score=123.70 Aligned_cols=131 Identities=18% Similarity=0.361 Sum_probs=90.7
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
.+|||||||+|.++.+|+. ..|+++|+++.++..+. +.+...+.++.+...|....++ +++||+|++.. +++++.
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~-vl~~l~ 198 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTV-VLMFLN 198 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcc-hhhhCC
Confidence 4799999999999999984 46888888877776554 4455566777777777766655 57899999887 577764
Q ss_pred --chHHHHHHHHhhCCCCeEEEEEeCC---CCCCC-h-hHHHhHHHHHHHHHhcCcEEEEEecce
Q 010274 295 --RDGILLLELDRLLRPGGYFVYSSPE---AYAHD-P-ENRRIWNAMYDLLKSMCWKIVSKKDQT 352 (514)
Q Consensus 295 --d~~~lL~el~RvLrPGG~lvis~P~---~~~~~-~-e~~~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (514)
+...+++++.++|+|||++++..+. .+... + .....-.++.++++. |+++......
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~e~~ 261 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYNENV 261 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEeccc
Confidence 4467999999999999997764321 11000 0 001112466677764 8888775543
No 37
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.24 E-value=2.1e-12 Score=109.85 Aligned_cols=93 Identities=26% Similarity=0.394 Sum_probs=56.2
Q ss_pred EEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC-C-CCCCceEEEecccccccc
Q 010274 220 LDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-Y-PSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 220 LDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp-~-~~~sFDlV~~s~~~l~~~ 293 (514)
||||||+|.++..++. ..++++|+++.++..+..+.................... . ..++||+|+++. ++||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~-vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASN-VLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE--TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhh-hHhhh
Confidence 7999999999988874 467899999888865554444433333333333333322 1 225999999887 79999
Q ss_pred cchHHHHHHHHhhCCCCeEE
Q 010274 294 QRDGILLLELDRLLRPGGYF 313 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~l 313 (514)
++...+++.+.++|||||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999986
No 38
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.24 E-value=4.6e-11 Score=113.55 Aligned_cols=128 Identities=23% Similarity=0.337 Sum_probs=91.5
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCC-CCCCCCceEEEecccccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELAHCSRCRIDWLQR 295 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~l-p~~~~sFDlV~~s~~~l~~~~d 295 (514)
.+|||+|||.|.+..+|.+.. .++..+.+++++.+..+.++|+++.-...+. .+ .|++++||.|+++. +++.+.+
T Consensus 15 srVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~-gL~~f~d~sFD~VIlsq-tLQ~~~~ 90 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVARGVSVIQGDLDE-GLADFPDQSFDYVILSQ-TLQAVRR 90 (193)
T ss_pred CEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHcCCCEEECCHHH-hHhhCCCCCccEEehHh-HHHhHhH
Confidence 589999999999999998531 2233344566677788889998754433332 34 48999999999999 7999999
Q ss_pred hHHHHHHHHhhCCCCeEEEEEeCCC-C----------------------CCChhHHH--hHHHHHHHHHhcCcEEEEEec
Q 010274 296 DGILLLELDRLLRPGGYFVYSSPEA-Y----------------------AHDPENRR--IWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 296 ~~~lL~el~RvLrPGG~lvis~P~~-~----------------------~~~~e~~~--~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
++.+|+|+.|+ |...+++.|+. + +++..+.+ ....++++.++.|+++++...
T Consensus 91 P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~ 167 (193)
T PF07021_consen 91 PDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVF 167 (193)
T ss_pred HHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEE
Confidence 99999999877 55778877743 1 11111221 235888999999998887554
Q ss_pred c
Q 010274 351 Q 351 (514)
Q Consensus 351 ~ 351 (514)
.
T Consensus 168 ~ 168 (193)
T PF07021_consen 168 L 168 (193)
T ss_pred E
Confidence 3
No 39
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.24 E-value=4.5e-11 Score=114.58 Aligned_cols=198 Identities=20% Similarity=0.249 Sum_probs=126.3
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
..++|.|+|||+|..+..|+++- -...+++.|.|.+|+..|+++.+++.|..+|+..+. ++..+|+++++. +++|++
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNA-vlqWlp 106 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANA-VLQWLP 106 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhh-hhhhcc
Confidence 45789999999999999998641 123344446666777888899999999999988886 457899999555 899999
Q ss_pred chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecceEEEeccCcc-hhhhccCCCCCC
Q 010274 295 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISN-SCYLKRVPGSRP 373 (514)
Q Consensus 295 d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~~~iw~Kp~~~-~c~~~r~~~~~P 373 (514)
+-..+|..+...|.|||.|.+..|+.+... ...-|.+.+++.-|...-... ..-++++-. ..|...-. |
T Consensus 107 dH~~ll~rL~~~L~Pgg~LAVQmPdN~dep-----sH~~mr~~A~~~p~~~~l~~~--~~~r~~v~s~a~Yy~lLa---~ 176 (257)
T COG4106 107 DHPELLPRLVSQLAPGGVLAVQMPDNLDEP-----SHRLMRETADEAPFAQELGGR--GLTRAPLPSPAAYYELLA---P 176 (257)
T ss_pred ccHHHHHHHHHhhCCCceEEEECCCccCch-----hHHHHHHHHhcCchhhhhCcc--ccccCCCCCHHHHHHHhC---c
Confidence 999999999999999999999998754211 122444555544443221111 011333321 22211111 1
Q ss_pred CCcCCCCCCchhhhhcccccccccccCcccc---cCCCCCCCCCCCCCCCCCccccCCChhhHhHhHhhHHHHHHHHHHH
Q 010274 374 PLCSSDDDPDVTWNVLMKACISPYSAKMHHE---KGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQ 450 (514)
Q Consensus 374 ~lC~~~~~~~~~wy~~L~~ci~~~~~~~~~~---~~~~~~~wp~rl~~~~~~~~~~g~~~~~~~~d~~~W~~~v~~y~~~ 450 (514)
--|+- |.=.+.+|..| ++...+. +|.++.||=++|. .+.|+.-.+.|...
T Consensus 177 ~~~rv-DiW~T~Y~h~l-------~~a~aIvdWvkgTgLrP~L~~L~-------------------e~~~~~FL~~Y~~~ 229 (257)
T COG4106 177 LACRV-DIWHTTYYHQL-------PGADAIVDWVKGTGLRPYLDRLD-------------------EEERQRFLDRYLAL 229 (257)
T ss_pred cccee-eeeeeeccccC-------CCccchhhheeccccceeccccC-------------------HHHHHHHHHHHHHH
Confidence 12322 22234445433 3332221 5777888888885 36677777888766
Q ss_pred hc
Q 010274 451 MK 452 (514)
Q Consensus 451 ~~ 452 (514)
+.
T Consensus 230 l~ 231 (257)
T COG4106 230 LA 231 (257)
T ss_pred HH
Confidence 64
No 40
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.23 E-value=3.9e-11 Score=116.01 Aligned_cols=122 Identities=17% Similarity=0.160 Sum_probs=88.9
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecC-CCCC--CCCCCceEEEeccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLP--YPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~-~~lp--~~~~sFDlV~~s~~ 288 (514)
..+|||||||+|.++..++. ..++++|+++.++..+..+.......++.+.++|+ ..++ +++++||+|++.+.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP 120 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence 35799999999999998874 36888888887776665433332224678888887 6666 77789999998653
Q ss_pred cccccc--------chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 289 RIDWLQ--------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 289 ~l~~~~--------d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
.+|.. ....+++++.++|||||.|+++++.. .....+.+.+++.||...
T Consensus 121 -~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~--------~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 121 -DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE--------GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH--------HHHHHHHHHHHhCccccc
Confidence 33322 13679999999999999999976432 224567788888888544
No 41
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.23 E-value=4.4e-11 Score=120.98 Aligned_cols=132 Identities=15% Similarity=0.293 Sum_probs=82.6
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
+.+|||||||.|.++.++++. .|+|++++......+. +.+++.|. .+.+...|..+++. +||.|++.. ++
T Consensus 63 G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~-~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~-~~ 137 (273)
T PF02353_consen 63 GDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYAR-ERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIE-MF 137 (273)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHH-HHHHCSTSSSTEEEEES-GGG------S-SEEEEES-EG
T ss_pred CCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHH-HHHHhcCCCCceEEEEeeccccCC---CCCEEEEEe-ch
Confidence 468999999999999999954 5666666554443333 33344454 36777777776653 899999887 68
Q ss_pred ccc--cchHHHHHHHHhhCCCCeEEEEEe---CCC----CCCCh-hHH----------HhHHHHHHHHHhcCcEEEEEec
Q 010274 291 DWL--QRDGILLLELDRLLRPGGYFVYSS---PEA----YAHDP-ENR----------RIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 291 ~~~--~d~~~lL~el~RvLrPGG~lvis~---P~~----~~~~~-e~~----------~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+|+ .+...+++++.++|||||.+++.. +.. ..... .-. ....++...+++.||++...++
T Consensus 138 Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~~~ 217 (273)
T PF02353_consen 138 EHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDVEN 217 (273)
T ss_dssp GGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EEEEEEE
T ss_pred hhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEEEE
Confidence 888 455789999999999999999643 111 00000 001 1124677788899999888776
Q ss_pred ce
Q 010274 351 QT 352 (514)
Q Consensus 351 ~~ 352 (514)
..
T Consensus 218 ~~ 219 (273)
T PF02353_consen 218 LG 219 (273)
T ss_dssp -H
T ss_pred cC
Confidence 54
No 42
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.22 E-value=9.9e-11 Score=111.45 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=84.7
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||||||+|.++..++. ..|+++|.++.++..+. +.+++.+. ++.+..+|+..++ .+++||+|+|.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~-~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--~ 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLR-EVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--L 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh--h
Confidence 35899999999998888762 46889998887765554 33334444 5788888887764 357899998653 3
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
.+...+++.+.++|+|||.+++...... ......+.+-+...|++.++....
T Consensus 119 ---~~~~~~~~~~~~~LkpgG~lvi~~~~~~------~~~~~~~~e~~~~~~~~~~~~~~~ 170 (181)
T TIGR00138 119 ---ASLNVLLELTLNLLKVGGYFLAYKGKKY------LDEIEEAKRKCQVLGVEPLEVPPL 170 (181)
T ss_pred ---hCHHHHHHHHHHhcCCCCEEEEEcCCCc------HHHHHHHHHhhhhcCceEeecccc
Confidence 3445688999999999999998653221 112233334444478887765544
No 43
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.21 E-value=1.1e-11 Score=122.13 Aligned_cols=98 Identities=18% Similarity=0.252 Sum_probs=71.2
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcC---CC----eEEEeecCCCCCCCCCCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERG---IP----STLGVLGTKRLPYPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg---~~----~~~~~~d~~~lp~~~~sFDlV~~s 286 (514)
+++|||+|||+|.++..|+. +.|+|+|++..++..+... +.... .+ +.+...+.+.+. +.||.|+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 36799999999999999994 5677776665555444322 11111 11 223333344333 459999999
Q ss_pred ccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 287 ~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
. +++|+.++..++..+.++|||||.+++++-
T Consensus 166 e-vleHV~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 166 E-VLEHVKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred H-HHHHHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 9 799999999999999999999999999873
No 44
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.20 E-value=1.7e-10 Score=111.50 Aligned_cols=97 Identities=21% Similarity=0.332 Sum_probs=76.1
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhhhhHHHHHHHHHc---CCCeEEEeecCCCCCCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-----~V~gvdis~~dis~a~~~~A~~r---g~~~~~~~~d~~~lp~~~~sFDlV~~s~ 287 (514)
..+|||+|||+|.++..++.. .++++|+++..+ +.++++ ..++.+..+|+.++++++++||+|+++.
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~-----~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~ 114 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEML-----EVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAF 114 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHH-----HHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEee
Confidence 468999999999999888742 456666655443 444433 2356788888888888778999999887
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
.+++..+...+++++.++|+|||++++...
T Consensus 115 -~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 115 -GLRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred -eeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 578888999999999999999999998653
No 45
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.20 E-value=1.5e-11 Score=118.66 Aligned_cols=134 Identities=26% Similarity=0.325 Sum_probs=98.4
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC-CC-CCCCCceEEEeccccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LP-YPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~-lp-~~~~sFDlV~~s~~~l~~ 292 (514)
..+++||+|||||..+..|... +-++.+.|+|++|+..|.+++.--.+.++++.. ++ ..++.||+|++.. ++.|
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaD-Vl~Y 200 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAAD-VLPY 200 (287)
T ss_pred ccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhh-HHHh
Confidence 3689999999999999998753 334444467788889999998755555555432 22 4467899999776 7999
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeCCC--CC--CChhHH---HhHHHHHHHHHhcCcEEEEEecce
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSPEA--YA--HDPENR---RIWNAMYDLLKSMCWKIVSKKDQT 352 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P~~--~~--~~~e~~---~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (514)
+.+.+.++.-+...|+|||.|.||.-.. +. ...... +.-.-+..+++..||+++..++.+
T Consensus 201 lG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 201 LGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred hcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence 9999999999999999999999987421 11 111111 112467899999999999887754
No 46
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.17 E-value=2.8e-10 Score=111.06 Aligned_cols=100 Identities=19% Similarity=0.315 Sum_probs=77.0
Q ss_pred CeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHc-CCCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
.+|||+|||+|.++..++. ..++++|+++..+..+..+..... ..++.+...|...++++.++||+|+++. .+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~-~l 131 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF-GL 131 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec-cc
Confidence 5899999999999988873 456777776655544443222211 2356778888888887778999999887 57
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
++..+...++.++.++|+|||.+++.+
T Consensus 132 ~~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 132 RNVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 888889999999999999999998865
No 47
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.17 E-value=8.1e-11 Score=112.10 Aligned_cols=100 Identities=21% Similarity=0.341 Sum_probs=81.5
Q ss_pred eEEEECCCCchHHHHHh---cCCCccccCChhhhhHHHHHHHHHcCCCeE-EEeecCCCCC-CCCCCceEEEeccccccc
Q 010274 218 NVLDVGCGVASFGAYLL---SHDIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKRLP-YPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La---~~~V~gvdis~~dis~a~~~~A~~rg~~~~-~~~~d~~~lp-~~~~sFDlV~~s~~~l~~ 292 (514)
.||+||||||..-.+.. ...|+++|-++.+-+-+...+++.+..++. |++++.+++| ++++++|.|+|.. ++--
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl-vLCS 157 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL-VLCS 157 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE-EEec
Confidence 58999999998766655 346788877777666555555555566666 8899999998 8899999999998 5777
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
+.++...|+++.|+|||||++++...
T Consensus 158 ve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 158 VEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 89999999999999999999998653
No 48
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.17 E-value=3.8e-10 Score=113.67 Aligned_cols=160 Identities=14% Similarity=0.273 Sum_probs=101.9
Q ss_pred eeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHH
Q 010274 178 KINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQ 254 (514)
Q Consensus 178 ~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~ 254 (514)
...|++...........-.+.+.+.+.+. ++.+|||||||-|.++.++++ .+|+|+++|......+. +
T Consensus 43 cayf~~~~~tL~eAQ~~k~~~~~~kl~L~--------~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~-~ 113 (283)
T COG2230 43 CAYFEDPDMTLEEAQRAKLDLILEKLGLK--------PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAE-K 113 (283)
T ss_pred eEEeCCCCCChHHHHHHHHHHHHHhcCCC--------CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHH-H
Confidence 34555554444444444445555555543 347899999999999999995 45677777666555444 3
Q ss_pred HHHHcCCC--eEEEeecCCCCCCCCCCceEEEecccccccccc--hHHHHHHHHhhCCCCeEEEEEe---CCCCC-CChh
Q 010274 255 FALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSS---PEAYA-HDPE 326 (514)
Q Consensus 255 ~A~~rg~~--~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d--~~~lL~el~RvLrPGG~lvis~---P~~~~-~~~e 326 (514)
.++++|.. +.+...|...+. +.||-|++.. +++|+.. ...++..+.++|+|||.+++.+ +.... ....
T Consensus 114 r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvg-mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~ 189 (283)
T COG2230 114 RIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVG-MFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPD 189 (283)
T ss_pred HHHHcCCCcccEEEeccccccc---cccceeeehh-hHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchH
Confidence 34445654 566655555544 4599999777 7888865 6889999999999999999754 22111 1111
Q ss_pred HH-H-h--------HHHHHHHHHhcCcEEEEEec
Q 010274 327 NR-R-I--------WNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 327 ~~-~-~--------~~~l~~ll~~~Gf~~v~~~~ 350 (514)
-. + + ...+....++.||.+...+.
T Consensus 190 ~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~ 223 (283)
T COG2230 190 FIDKYIFPGGELPSISEILELASEAGFVVLDVES 223 (283)
T ss_pred HHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhh
Confidence 11 1 1 13566667888887765443
No 49
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.16 E-value=3.5e-11 Score=128.05 Aligned_cols=127 Identities=24% Similarity=0.480 Sum_probs=98.5
Q ss_pred CCCCCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 213 GGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 213 ~~~~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
.++.|.|+|+.+|.|.|+++|.+..|+.|.+.|. .....+....+||+-..++.. .+.++.-+++||+||++.. +..
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLIG~yhDW-CE~fsTYPRTYDLlHA~~l-fs~ 439 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLIGVYHDW-CEAFSTYPRTYDLLHADGL-FSL 439 (506)
T ss_pred ccceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccchhccch-hhccCCCCcchhheehhhh-hhh
Confidence 3568899999999999999999999999999998 556666888888864444332 4556655699999998763 433
Q ss_pred cc---chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 293 LQ---RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 293 ~~---d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
.. +...+|.|++|+|||||+++|.+ ......+++.+++++.|+......+
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD---------~~~vl~~v~~i~~~lrW~~~~~d~e 492 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRD---------TVDVLEKVKKIAKSLRWEVRIHDTE 492 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEec---------cHHHHHHHHHHHHhCcceEEEEecC
Confidence 22 34679999999999999999954 2344678999999999987765443
No 50
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.16 E-value=3.5e-10 Score=110.22 Aligned_cols=131 Identities=18% Similarity=0.227 Sum_probs=88.7
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+|||||||+|.++..++. ..++|+|+++.++..+..+. ...+. ++.+.+.|...++ ++||+|++... ++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~-~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~-l~ 130 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRA-QGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV-LI 130 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-HhcCCCCceEEEECChhhCC---CCcCEEEEhhH-HH
Confidence 46899999999999999985 35777877776665554332 22232 5778888877765 68999998874 55
Q ss_pred ccc--chHHHHHHHHhhCCCCeEEEEEeCCCCC-----------CChh----HHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 292 WLQ--RDGILLLELDRLLRPGGYFVYSSPEAYA-----------HDPE----NRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 292 ~~~--d~~~lL~el~RvLrPGG~lvis~P~~~~-----------~~~e----~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
|.+ +...++.++.+++++++++.+.....+. .... ....-+++.++++++||+++..+..
T Consensus 131 ~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~ 207 (219)
T TIGR02021 131 HYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLV 207 (219)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecc
Confidence 543 3467899999999988777664321110 0000 0001257889999999999877644
No 51
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.15 E-value=1.3e-10 Score=111.47 Aligned_cols=137 Identities=20% Similarity=0.384 Sum_probs=92.6
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
+.++||+|||.|..+.+|+. ..|+++|+++..+.... +.|.+.++++...+.|+....++ +.||+|++.. +++|+
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~-~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~-v~~fL 107 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQ-RLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTV-VFMFL 107 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHH-HHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEES-SGGGS
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHhhcCceeEEEEecchhcccc-CCcCEEEEEE-EeccC
Confidence 35899999999999999995 57899999998876654 67888889999999998777775 6899999765 56666
Q ss_pred cch--HHHHHHHHhhCCCCeEEEEEeC---CCCCCChhHHHhH--HHHHHHHHhcCcEEEEEecceEEEec
Q 010274 294 QRD--GILLLELDRLLRPGGYFVYSSP---EAYAHDPENRRIW--NAMYDLLKSMCWKIVSKKDQTVIWAK 357 (514)
Q Consensus 294 ~d~--~~lL~el~RvLrPGG~lvis~P---~~~~~~~e~~~~~--~~l~~ll~~~Gf~~v~~~~~~~iw~K 357 (514)
... ..++..+...++|||++++.+. +.+.......-.+ .++..... +|+++..+....--+|
T Consensus 108 ~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~E~~g~~h~ 176 (192)
T PF03848_consen 108 QRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKYNEDVGELHR 176 (192)
T ss_dssp -GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEEEccccceee
Confidence 544 5699999999999999887431 1111100000011 24555544 6999987665544444
No 52
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.14 E-value=4.3e-10 Score=109.41 Aligned_cols=134 Identities=16% Similarity=0.319 Sum_probs=94.4
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCC-CCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYP-SRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~-~~sFDlV~~s~~~l~ 291 (514)
..+|||+|||+|.++..++. ..++++|+++..+..+..+.. ..+. ++.+...+....+.. .++||+|++.. .++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~-~l~ 123 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAK-KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCME-VLE 123 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhcCCCCCccEEEehh-HHH
Confidence 46899999999999988874 356777776665544443222 2334 467777776666543 37899999887 688
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCCCCCC---------------hh---HHH---hHHHHHHHHHhcCcEEEEEec
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD---------------PE---NRR---IWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~---------------~e---~~~---~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+..++..++.++.++|+|||.++++.+...... .. ... .-.++.++++++||++++.+.
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~~ 203 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVKG 203 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeeee
Confidence 899999999999999999999998775321000 00 000 124688899999999988765
Q ss_pred c
Q 010274 351 Q 351 (514)
Q Consensus 351 ~ 351 (514)
.
T Consensus 204 ~ 204 (224)
T TIGR01983 204 L 204 (224)
T ss_pred E
Confidence 4
No 53
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.14 E-value=1.4e-10 Score=116.75 Aligned_cols=97 Identities=18% Similarity=0.299 Sum_probs=70.4
Q ss_pred CCeEEEECCCCch----HHHHHhc---------CCCccccCChhhhhHHHHHHHHHcC----------------------
Q 010274 216 IRNVLDVGCGVAS----FGAYLLS---------HDIIAMSLAPNDVHENQIQFALERG---------------------- 260 (514)
Q Consensus 216 ~~~VLDIGCGtG~----~a~~La~---------~~V~gvdis~~dis~a~~~~A~~rg---------------------- 260 (514)
..+|+|+|||+|. ++..|++ ..|+|+|+++. +++.|++.-
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~-----~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~ 174 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLK-----ALEKARAGIYPERELEDLPKALLARYFSRVE 174 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHH-----HHHHHHcCCCCHHHHhcCCHHHHhhhEEeCC
Confidence 4689999999995 4544443 23555555554 445554421
Q ss_pred ----------CCeEEEeecCCCCCCCCCCceEEEecccccccccch--HHHHHHHHhhCCCCeEEEEEeC
Q 010274 261 ----------IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 261 ----------~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P 318 (514)
..+.|.+.|+...++++++||+|+|.+ +++|.+++ ..++++++++|+|||+|++...
T Consensus 175 ~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crn-vl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 175 DKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRN-VLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred CeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEech-hHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 146788888888887778999999988 57777543 5799999999999999999653
No 54
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.13 E-value=4.2e-10 Score=113.74 Aligned_cols=133 Identities=23% Similarity=0.243 Sum_probs=93.4
Q ss_pred CCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHc-CCCe--EEEeecCCCCCCCCCCceEEEeccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER-GIPS--TLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~r-g~~~--~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
++++|||||||.|.++..|++ ..|+|+|-+..-. .+-+++++- +... ...-..++.+|. .++||+|+|..
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~--~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MG- 190 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFY--LQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMG- 190 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHH--HHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEee-
Confidence 347999999999999998885 3578887765433 333343332 2222 233246788887 68999999887
Q ss_pred ccccccchHHHHHHHHhhCCCCeEEEEEeC------------C-CCCCChhH--HHhHHHHHHHHHhcCcEEEEEecc
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSP------------E-AYAHDPEN--RRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~lvis~P------------~-~~~~~~e~--~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
++.|..++-..|.++...|+|||.+++.+- . .|...... ...-..+...++++||+.++.-+.
T Consensus 191 VLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 191 VLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred ehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecC
Confidence 788899999999999999999999997441 1 11111100 011258899999999998876654
No 55
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.13 E-value=9.3e-10 Score=108.02 Aligned_cols=133 Identities=15% Similarity=0.312 Sum_probs=92.8
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC-CCCCCceEEEeccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-YPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp-~~~~sFDlV~~s~~~l~~ 292 (514)
..+|||||||+|.++..++.. .++++|+++..+..+.... ...+..+.+...+....+ ..+++||+|+++. .+++
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~-~l~~ 126 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHA-LESGLKIDYRQTTAEELAAEHPGQFDVVTCME-MLEH 126 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHH-HHcCCceEEEecCHHHhhhhcCCCccEEEEhh-Hhhc
Confidence 457999999999999888753 5677777665554443222 222445666666665554 3457899999988 5888
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCCh------------------hHHH---hHHHHHHHHHhcCcEEEEEec
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDP------------------ENRR---IWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~------------------e~~~---~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
..+...+++.+.++|+|||.++++.+....... .... .-.++.+++++.||+++....
T Consensus 127 ~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 127 VPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDITG 205 (233)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeeee
Confidence 889999999999999999999998753211000 0000 113688999999999987653
No 56
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.13 E-value=3.3e-10 Score=108.83 Aligned_cols=122 Identities=15% Similarity=0.216 Sum_probs=85.0
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC---CCCCCceEEEecccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---YPSRSFELAHCSRCR 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp---~~~~sFDlV~~s~~~ 289 (514)
.+|||||||+|.++..++. .+++++|++...+..+..+.......++.++.+|+..++ +++++||.|++...
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p- 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP- 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC-
Confidence 4799999999999998884 468889888877766554333332236788888876543 45678999997653
Q ss_pred cccccch--------HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcC-cEEEE
Q 010274 290 IDWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVS 347 (514)
Q Consensus 290 l~~~~d~--------~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~G-f~~v~ 347 (514)
.+|.... ..++.++.++|||||.|++.+... ..+..+.+.+...+ |+.+.
T Consensus 97 dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~--------~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 97 DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE--------PLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH--------HHHHHHHHHHHhCCCeEecc
Confidence 4443321 469999999999999999976432 12345556666555 76553
No 57
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.12 E-value=9e-10 Score=113.56 Aligned_cols=129 Identities=18% Similarity=0.225 Sum_probs=80.3
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHc-----CCCeEEEeecCCCCCCCCCCceEEEeccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~r-----g~~~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
..+|||||||+|.++..|+. ..|+++|+++.++..+..+..... ...+.+...|...+ +++||+|+|...
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~v 221 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDV 221 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCE
Confidence 36899999999999999985 357788777777665553322210 22456666665543 478999999885
Q ss_pred ccccccch--HHHHHHHHhhCCCCeEEEEEeCCCCCCCh--h----------HHH----hHHHHHHHHHhcCcEEEEEe
Q 010274 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDP--E----------NRR----IWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 289 ~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~~~~--e----------~~~----~~~~l~~ll~~~Gf~~v~~~ 349 (514)
++|.++. ..+++.+.+ +.+||.++...|..+.+.. . ... .-++++++++++||++...+
T Consensus 222 -L~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 222 -LIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred -EEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 5555443 345666665 4566665544443221100 0 000 12578999999999987544
No 58
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.11 E-value=2.8e-10 Score=123.50 Aligned_cols=130 Identities=16% Similarity=0.218 Sum_probs=91.3
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCC--CCCCCCCCceEEEeccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK--RLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~--~lp~~~~sFDlV~~s~~~l~~ 292 (514)
.+|||||||+|.++..|+. ..|+++|+++.++..+.. ......++.+...|+. .+++++++||+|+|.. .++|
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~-~l~~ 115 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNISDGSVDLIFSNW-LLMY 115 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCCCCCEEEEehhh-hHHh
Confidence 5899999999999999985 367888877766643321 1111235677777764 5678888999999888 5777
Q ss_pred ccch--HHHHHHHHhhCCCCeEEEEEeCCCCCC-------ChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 293 LQRD--GILLLELDRLLRPGGYFVYSSPEAYAH-------DPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 293 ~~d~--~~lL~el~RvLrPGG~lvis~P~~~~~-------~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
+.+. ..++.++.|+|||||++++.+...... ++........+.+++.++||......
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 181 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGN 181 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCC
Confidence 7663 679999999999999999876432111 11121223466788999998766443
No 59
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.10 E-value=4.2e-10 Score=109.55 Aligned_cols=91 Identities=15% Similarity=0.163 Sum_probs=67.9
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC--------CCCCCceE
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp--------~~~~sFDl 282 (514)
..+|||||||+|.++..+++ ..|+++|+++. ....++.+.++|+...+ +.+++||+
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~ 120 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQV 120 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence 35899999999999988874 35888888761 11235678888877643 56789999
Q ss_pred EEecccccccccch-----------HHHHHHHHhhCCCCeEEEEEeC
Q 010274 283 AHCSRCRIDWLQRD-----------GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 283 V~~s~~~l~~~~d~-----------~~lL~el~RvLrPGG~lvis~P 318 (514)
|+|+. ..++..++ ..+|.++.++|||||.|++...
T Consensus 121 V~S~~-~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 121 VMSDM-APNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred EecCC-CCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99866 35444321 4589999999999999999663
No 60
>PRK04266 fibrillarin; Provisional
Probab=99.10 E-value=1.1e-09 Score=107.95 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=87.1
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCC----CCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL----PYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~l----p~~~~sFDlV~~s~ 287 (514)
..+|||+|||+|.++..|+.. .|+++|+++.++.... +.++++ .++.+..+|.... ++. ++||+|++..
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~ 149 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EKVDVIYQDV 149 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEEECC
Confidence 358999999999999999853 5888888887765444 344443 4567777776531 223 5699998543
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEeCCC-CCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA-YAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~-~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
. . ......++.++.|+|||||+++++.+.. ..........+++..+.++++||+.+...+.
T Consensus 150 ~-~--p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 150 A-Q--PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred C-C--hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence 1 1 1122456899999999999999965421 0011111233456679999999999877664
No 61
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.10 E-value=2.8e-09 Score=101.46 Aligned_cols=121 Identities=12% Similarity=0.013 Sum_probs=84.7
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+|||||||+|.++..++. ..|+++|+++..+..+..+..+....++.+...+.. .+++ ++||+|++... .+
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~~-~~~D~v~~~~~-~~ 108 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IELP-GKADAIFIGGS-GG 108 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhcC-cCCCEEEECCC-cc
Confidence 35899999999999998874 368889888877666553333322234666666653 3333 58999997652 32
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
....++.++.++|+|||++++..... ....++.+++++.||+.+....
T Consensus 109 ---~~~~~l~~~~~~Lk~gG~lv~~~~~~--------~~~~~~~~~l~~~g~~~~~~~~ 156 (187)
T PRK08287 109 ---NLTAIIDWSLAHLHPGGRLVLTFILL--------ENLHSALAHLEKCGVSELDCVQ 156 (187)
T ss_pred ---CHHHHHHHHHHhcCCCeEEEEEEecH--------hhHHHHHHHHHHCCCCcceEEE
Confidence 34568999999999999999864321 2245777899999997665443
No 62
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.10 E-value=3.8e-10 Score=117.67 Aligned_cols=101 Identities=16% Similarity=0.183 Sum_probs=74.1
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
.+|||+|||+|.++..++. ..|+++|+++.++..+..+. +..+....+...|.... .+++||+|+|+.. +|+
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl-~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPP-FH~ 273 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATL-AANGLEGEVFASNVFSD--IKGRFDMIISNPP-FHD 273 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCEEEEcccccc--cCCCccEEEECCC-ccC
Confidence 3799999999999999884 25788888887776666433 33455556666665332 2578999999873 544
Q ss_pred c-----cchHHHHHHHHhhCCCCeEEEEEeCCCC
Q 010274 293 L-----QRDGILLLELDRLLRPGGYFVYSSPEAY 321 (514)
Q Consensus 293 ~-----~d~~~lL~el~RvLrPGG~lvis~P~~~ 321 (514)
. ...+.++.++.+.|||||.|+++.....
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l 307 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL 307 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCC
Confidence 2 2236799999999999999999886554
No 63
>PRK06202 hypothetical protein; Provisional
Probab=99.09 E-value=1.3e-09 Score=107.28 Aligned_cols=94 Identities=19% Similarity=0.268 Sum_probs=67.6
Q ss_pred CCCeEEEECCCCchHHHHHhc--------CCCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCCCCCCCCceEEE
Q 010274 215 NIRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAH 284 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~--------~~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~lp~~~~sFDlV~ 284 (514)
+..+|||||||+|.++..|+. ..++++|+++ .+++.|+++. .++.+.+.+...+++++++||+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~-----~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP-----RAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH-----HHHHHHHhccccCCCeEEEEecccccccCCCccEEE
Confidence 346899999999999888763 1456665554 4555555542 235566666666777778999999
Q ss_pred ecccccccccch--HHHHHHHHhhCCCCeEEEEE
Q 010274 285 CSRCRIDWLQRD--GILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 285 ~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis 316 (514)
|+. ++||+++. ..+++++.|+++ |.+++.
T Consensus 135 ~~~-~lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 135 SNH-FLHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred ECC-eeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 998 58888775 469999999998 444443
No 64
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.09 E-value=1.3e-09 Score=102.93 Aligned_cols=122 Identities=16% Similarity=0.131 Sum_probs=86.6
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
.+|||+|||+|.++..++.. .|+++|+++..+..+..+.. ..+..+.+..+|....+ .++||+|+++.. +++..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p-~~~~~ 96 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAK-LNNVGLDVVMTDLFKGV--RGKFDVILFNPP-YLPLE 96 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCceEEEEccccccc--CCcccEEEECCC-CCCCc
Confidence 57999999999999998853 47888888777665553333 34556777777765543 358999998753 32222
Q ss_pred c---------------------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 295 R---------------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 295 d---------------------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+ ...++.++.++|+|||.+++..+... .-.++.+++++.||.......
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--------~~~~~~~~l~~~gf~~~~~~~ 165 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--------GEPDTFDKLDERGFRYEIVAE 165 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--------ChHHHHHHHHhCCCeEEEEEE
Confidence 1 24589999999999999999764321 124667888999998776544
No 65
>PRK06922 hypothetical protein; Provisional
Probab=99.09 E-value=2.8e-10 Score=125.58 Aligned_cols=101 Identities=16% Similarity=0.167 Sum_probs=76.0
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC--CCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp--~~~~sFDlV~~s~~~ 289 (514)
..+|||||||+|.++..++. ..++|+|+++.++..+..+ +...+.++.+..+|...++ +++++||+|+++..
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Arar-l~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v- 496 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKK-KQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI- 496 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-hhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH-
Confidence 35899999999999888774 4677887777666554422 2223456677788887787 78899999998874
Q ss_pred cccc-------------cchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 290 IDWL-------------QRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 290 l~~~-------------~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
+|+. .+...+|+++.++|||||.+++.+.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 5543 2446799999999999999999864
No 66
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.08 E-value=7.1e-10 Score=107.56 Aligned_cols=97 Identities=14% Similarity=0.070 Sum_probs=70.0
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc-
Q 010274 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ- 294 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~- 294 (514)
..+|||||||+|.++..|+... .+.++.+.|+++.+++.|+++..++.+.++++.. |+++++||+|++.. +++|+.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~-vL~hl~p 120 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKG-VLIHINP 120 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECC-hhhhCCH
Confidence 3579999999999999887531 1233444455556667777655566777888777 88889999999887 566664
Q ss_pred -chHHHHHHHHhhCCCCeEEEEEe
Q 010274 295 -RDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 295 -d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+...+++++.|++ ++++++..
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEE
Confidence 2367899999998 46777755
No 67
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.06 E-value=2.1e-10 Score=107.86 Aligned_cols=100 Identities=18% Similarity=0.265 Sum_probs=70.5
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCC-eEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~-~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
.+|||+|||+|.++..++.. .|+++|+++..+..+..+. ...+.. +.+...|.... .++++||+|+|+-- ++
T Consensus 33 ~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~-~~n~~~~v~~~~~d~~~~-~~~~~fD~Iv~NPP-~~ 109 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNA-ERNGLENVEVVQSDLFEA-LPDGKFDLIVSNPP-FH 109 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHH-HHTTCTTEEEEESSTTTT-CCTTCEEEEEE----SB
T ss_pred CeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH-HhcCcccccccccccccc-ccccceeEEEEccc-hh
Confidence 57999999999999999852 4888888887776665433 334444 77777775432 33689999998753 32
Q ss_pred cccc-----hHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 292 WLQR-----DGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 292 ~~~d-----~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
...+ ...++.+..+.|+|||.|++....
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 2222 366899999999999999876643
No 68
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.06 E-value=3.3e-09 Score=104.82 Aligned_cols=123 Identities=21% Similarity=0.306 Sum_probs=84.7
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEeccccc-
Q 010274 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI- 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~l- 290 (514)
.+|||+|||+|.++..++.. .++++|+++..+..+... +...+. ++.+..+|... ++++++||+|+|+.-.+
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~-~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKN-AARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCc
Confidence 47999999999999998853 678888887776655533 333344 47777777655 45668999999853111
Q ss_pred ----ccc--------------------cchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 291 ----DWL--------------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 291 ----~~~--------------------~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
+.. .....++.++.++|+|||.+++..... .-..+.+++++.||+.+
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~---------~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD---------QGEAVRALFEAAGFADV 237 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc---------HHHHHHHHHHhCCCCce
Confidence 000 011357899999999999999865321 12467888999999876
Q ss_pred EEec
Q 010274 347 SKKD 350 (514)
Q Consensus 347 ~~~~ 350 (514)
....
T Consensus 238 ~~~~ 241 (251)
T TIGR03534 238 ETRK 241 (251)
T ss_pred EEEe
Confidence 5543
No 69
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.04 E-value=2.1e-09 Score=111.60 Aligned_cols=122 Identities=20% Similarity=0.239 Sum_probs=89.0
Q ss_pred CCeEEEECCCCchHHHHHh--cCCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEeccc----
Q 010274 216 IRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRC---- 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La--~~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~---- 288 (514)
..+|||+|||+|.++..++ +..++|+|+++.++..+..+.. ..+. ++.+..+|+.++|+.+++||+|++..-
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~-~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~ 261 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLE-HYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRS 261 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHH-HhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCc
Confidence 3589999999999877665 4578899988887776654433 3333 357788999999988889999998521
Q ss_pred -ccc--cccc-hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 289 -RID--WLQR-DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 289 -~l~--~~~d-~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
... ...+ ...++.++.++|||||++++..|... .+.++++.+|| ++....
T Consensus 262 ~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----------~~~~~~~~~g~-i~~~~~ 315 (329)
T TIGR01177 262 TTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----------DLESLAEDAFR-VVKRFE 315 (329)
T ss_pred ccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----------CHHHHHhhcCc-chheee
Confidence 011 0111 36799999999999999999887542 44577999999 665444
No 70
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=1.7e-09 Score=109.81 Aligned_cols=122 Identities=19% Similarity=0.310 Sum_probs=85.6
Q ss_pred CCCeEEEECCCCchHHHHHh--cC-CCccccCChhhhhHHHHHHHHHcCCCe--EEEeecCCCCCCCC-CCceEEEeccc
Q 010274 215 NIRNVLDVGCGVASFGAYLL--SH-DIIAMSLAPNDVHENQIQFALERGIPS--TLGVLGTKRLPYPS-RSFELAHCSRC 288 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La--~~-~V~gvdis~~dis~a~~~~A~~rg~~~--~~~~~d~~~lp~~~-~sFDlV~~s~~ 288 (514)
++++|||+|||+|.++...+ ++ .+.|+|+++..+..++ +.++.++++. .....+. +..+. +.||+|+++-
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~-eNa~~N~v~~~~~~~~~~~--~~~~~~~~~DvIVANI- 237 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR-ENARLNGVELLVQAKGFLL--LEVPENGPFDVIVANI- 237 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHH-HHHHHcCCchhhhcccccc--hhhcccCcccEEEehh-
Confidence 45789999999999888876 33 5899999999887776 4555555552 2222222 22233 5899999775
Q ss_pred ccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
+- .-...+..++.+.|||||++++|.-- . ..-+.+.+.+++.||+++.....
T Consensus 238 -LA--~vl~~La~~~~~~lkpgg~lIlSGIl-----~---~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 238 -LA--EVLVELAPDIKRLLKPGGRLILSGIL-----E---DQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred -hH--HHHHHHHHHHHHHcCCCceEEEEeeh-----H---hHHHHHHHHHHhCCCeEeEEEec
Confidence 21 12257899999999999999998721 1 12356778888999999876554
No 71
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.04 E-value=2.5e-09 Score=108.99 Aligned_cols=117 Identities=16% Similarity=0.273 Sum_probs=79.6
Q ss_pred CeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCC--eEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~--~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
.+|||+|||+|.++..++. ..|+++|+++.++..+..+.. ..+.. +.+...+ ..+..+++||+|+++. ..+
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~-~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~-~~~ 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAE-LNQVSDRLQVKLIY--LEQPIEGKADVIVANI-LAE 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHH-HcCCCcceEEEecc--cccccCCCceEEEEec-CHH
Confidence 6899999999999888763 368899888887766654433 33333 2333332 2334457899999865 222
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
....++.++.++|||||+++++.... ....++.+.+++. |+++...
T Consensus 237 ---~l~~ll~~~~~~LkpgG~li~sgi~~--------~~~~~v~~~~~~~-f~~~~~~ 282 (288)
T TIGR00406 237 ---VIKELYPQFSRLVKPGGWLILSGILE--------TQAQSVCDAYEQG-FTVVEIR 282 (288)
T ss_pred ---HHHHHHHHHHHHcCCCcEEEEEeCcH--------hHHHHHHHHHHcc-CceeeEe
Confidence 23568999999999999999987421 1235667777776 8776543
No 72
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.04 E-value=2.9e-09 Score=93.08 Aligned_cols=97 Identities=15% Similarity=0.061 Sum_probs=69.6
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC-CCCCCCCceEEEecccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~-lp~~~~sFDlV~~s~~~l~ 291 (514)
.+|||+|||+|.++..++. ..++++|+++..+..+..+.......++.+...+... ++....+||.|++... .+
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~-~~ 99 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS-GG 99 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc-ch
Confidence 5899999999999999884 3578888887766655533333322356666666544 3333468999997653 22
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
....+++++.++|+|||+|++..
T Consensus 100 ---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 100 ---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 23579999999999999999864
No 73
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.04 E-value=3.8e-09 Score=105.41 Aligned_cols=116 Identities=19% Similarity=0.266 Sum_probs=78.5
Q ss_pred CCeEEEECCCCchHHHHHhc--C-CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--H-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~-~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
..+|||+|||+|.++..++. . .|+++|+++..+..+..+. ...+....+. ++..+.+||+|+++.. .
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~-~~~~~~~~~~------~~~~~~~fD~Vvani~-~-- 189 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENA-ELNGVELNVY------LPQGDLKADVIVANIL-A-- 189 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHcCCCceEE------EccCCCCcCEEEEcCc-H--
Confidence 36899999999998887764 2 4788888887776555333 3333321111 1112237999997642 2
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
.....++.++.++|||||+++++.... ...+.+...+++.||+++....
T Consensus 190 -~~~~~l~~~~~~~LkpgG~lilsgi~~--------~~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 190 -NPLLELAPDLARLLKPGGRLILSGILE--------EQADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred -HHHHHHHHHHHHhcCCCcEEEEEECcH--------hhHHHHHHHHHHCCCEEEEEEE
Confidence 223568999999999999999986422 1235678889999999876544
No 74
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.04 E-value=1.4e-09 Score=114.69 Aligned_cols=129 Identities=12% Similarity=0.169 Sum_probs=80.7
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcC---CCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg---~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
.+|||+|||+|.++..++. ..|+++|+++.++..+..+.+.... .++.+...|.... +++.+||+|+|+-.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP- 307 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP- 307 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC-
Confidence 4799999999999999874 3688888888777666544433221 1456666654322 33468999999753
Q ss_pred cccc---cc--hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEE
Q 010274 290 IDWL---QR--DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 290 l~~~---~d--~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~ 347 (514)
+|.. .+ ...++.++.++|+|||.|++.......+.....+.+...+.+.+..+|.+++
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg~~~~va~~~kf~vl~ 370 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNCTTIATNNKFVVLK 370 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcCCceEEccCCCEEEEE
Confidence 3322 11 2568999999999999999986443322222222222333334445555544
No 75
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.03 E-value=7.8e-10 Score=103.08 Aligned_cols=111 Identities=9% Similarity=0.017 Sum_probs=77.5
Q ss_pred cccCChhhhhHHHHHHHHHc---CCCeEEEeecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEE
Q 010274 240 AMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 240 gvdis~~dis~a~~~~A~~r---g~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis 316 (514)
|+|+++.++..+..+..... ..++.+.++|+.++|+++++||+|++++ +++++++...+|++++|+|||||.|++.
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~-~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY-GLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc-hhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 56666665544432221111 1257899999999999999999999888 6888899999999999999999999976
Q ss_pred eCCCC------------------------------CCChhHHH---hHHHHHHHHHhcCcEEEEEecc
Q 010274 317 SPEAY------------------------------AHDPENRR---IWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 317 ~P~~~------------------------------~~~~e~~~---~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
+.... .+..+... ..+++.++++++||..+.....
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~ 148 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEI 148 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEEC
Confidence 53210 01111111 1247889999999988765554
No 76
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.03 E-value=2.4e-09 Score=102.58 Aligned_cols=123 Identities=20% Similarity=0.252 Sum_probs=84.0
Q ss_pred CeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC-C-CCCCCCceEEEecccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-L-PYPSRSFELAHCSRCRID 291 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~-l-p~~~~sFDlV~~s~~~l~ 291 (514)
.+|||||||+|.++..++.. .++++|+ ++.+++.+++++ +.+..+|+.. + ++++++||+|+|+. +++
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~-----s~~~i~~a~~~~--~~~~~~d~~~~l~~~~~~sfD~Vi~~~-~l~ 86 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGIEI-----DQDGVLACVARG--VNVIQGDLDEGLEAFPDKSFDYVILSQ-TLQ 86 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEEeC-----CHHHHHHHHHcC--CeEEEEEhhhcccccCCCCcCEEEEhh-HhH
Confidence 47999999999999988743 3355554 455556666554 4556666654 4 46778999999988 689
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCCC----------------------C-CC--hhHHHhHHHHHHHHHhcCcEEE
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAY----------------------A-HD--PENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~~----------------------~-~~--~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
|+.++..+++++.|++++ .+++.|..- . .. ........++.++++++||+++
T Consensus 87 ~~~d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~ 163 (194)
T TIGR02081 87 ATRNPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRIL 163 (194)
T ss_pred cCcCHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEE
Confidence 999999999999988764 344433210 0 00 0011134688999999999988
Q ss_pred EEec
Q 010274 347 SKKD 350 (514)
Q Consensus 347 ~~~~ 350 (514)
....
T Consensus 164 ~~~~ 167 (194)
T TIGR02081 164 DRAA 167 (194)
T ss_pred EEEE
Confidence 6554
No 77
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.03 E-value=1.1e-09 Score=104.62 Aligned_cols=98 Identities=23% Similarity=0.374 Sum_probs=69.5
Q ss_pred CCCCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHc---CCCeEEEeecCCCCCCCCCCceEEEeccc
Q 010274 214 GNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~r---g~~~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
...+++||+|||.|.++..|+.+ .++++|+++..+ +.|++| ..++.+.+.+.... .|+++||+|+++.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al-----~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SE- 114 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRAL-----ARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSE- 114 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHH-----HHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHH-----HHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEeh-
Confidence 44578999999999999999974 566776665544 555554 24678888877554 4678999999998
Q ss_pred ccccccch---HHHHHHHHhhCCCCeEEEEEeC
Q 010274 289 RIDWLQRD---GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 289 ~l~~~~d~---~~lL~el~RvLrPGG~lvis~P 318 (514)
+++|+.+. ..++..+...|+|||.|++.+.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 68888653 4689999999999999999763
No 78
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.02 E-value=8.8e-10 Score=107.64 Aligned_cols=99 Identities=17% Similarity=0.073 Sum_probs=72.2
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHH------------HcCCCeEEEeecCCCCCCC-CCCce
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFAL------------ERGIPSTLGVLGTKRLPYP-SRSFE 281 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~------------~rg~~~~~~~~d~~~lp~~-~~sFD 281 (514)
.+|||+|||.|..+.+|++ ..|+|+|+++..+..++.+... .++.++.+.++|...++.. .++||
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD 115 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVD 115 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcC
Confidence 5899999999999999995 4789998888877644321100 1234577888888777643 35799
Q ss_pred EEEecccccccccch--HHHHHHHHhhCCCCeEEEEE
Q 010274 282 LAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 282 lV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis 316 (514)
.|+-..+ +++++.. ..++..+.++|||||++++.
T Consensus 116 ~i~D~~~-~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 116 AVYDRAA-LIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred EEEechh-hccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 9997664 4455333 55999999999999986654
No 79
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=1.2e-09 Score=110.40 Aligned_cols=160 Identities=17% Similarity=0.175 Sum_probs=97.4
Q ss_pred eeecCCCCCCCCccH-HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHH
Q 010274 178 KINFPGGGTHFHDGA-DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQ 252 (514)
Q Consensus 178 ~~~Fpggg~~F~~ga-~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~ 252 (514)
.+.|-.....|.... +.-.+.+.+.++.. .. .+|||+|||.|.+++.|+. ..++-+|++...+..++
T Consensus 128 ~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~-------~~-~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar 199 (300)
T COG2813 128 ELTFKTLPGVFSRDKLDKGSRLLLETLPPD-------LG-GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESAR 199 (300)
T ss_pred ceEEEeCCCCCcCCCcChHHHHHHHhCCcc-------CC-CcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHH
Confidence 344444444554332 34445556655532 12 2799999999999999995 35677777777776666
Q ss_pred HHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccccch----HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHH
Q 010274 253 IQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEAYAHDPENR 328 (514)
Q Consensus 253 ~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~----~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~ 328 (514)
.+.+........+...+ .-.+..+ +||+|+|+--.+.-..-. .+++.+..+.|++||.|+|+......+.....
T Consensus 200 ~Nl~~N~~~~~~v~~s~-~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~ 277 (300)
T COG2813 200 KNLAANGVENTEVWASN-LYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLK 277 (300)
T ss_pred HhHHHcCCCccEEEEec-ccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHH
Confidence 44444433333333333 3334443 999999886422222222 37999999999999999998875544444333
Q ss_pred HhHHHHHHHHHhcCcEEEE
Q 010274 329 RIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 329 ~~~~~l~~ll~~~Gf~~v~ 347 (514)
+.|..++.+.+.-||++.+
T Consensus 278 ~~Fg~v~~la~~~gf~Vl~ 296 (300)
T COG2813 278 ELFGNVEVLAKNGGFKVLR 296 (300)
T ss_pred HhcCCEEEEEeCCCEEEEE
Confidence 4444455555566666554
No 80
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.01 E-value=3.3e-09 Score=108.80 Aligned_cols=127 Identities=20% Similarity=0.304 Sum_probs=84.1
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
..+|||||||+|.++..+++. +++++|+ +..+..+. +.+.+.+. ++.+..+|....+++ .+|+|++++.
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~~~~~- 224 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGVADRMRGIAVDIYKESYP--EADAVLFCRI- 224 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCccceEEEEecCccCCCCC--CCCEEEeEhh-
Confidence 468999999999999998853 4667775 33343332 33344443 467888887766665 3799998884
Q ss_pred cccccch--HHHHHHHHhhCCCCeEEEEEeCCCCC-CChh---HH---------------HhHHHHHHHHHhcCcEEEE
Q 010274 290 IDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYA-HDPE---NR---------------RIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 290 l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~-~~~e---~~---------------~~~~~l~~ll~~~Gf~~v~ 347 (514)
+|+..+. ..+|+++.++|||||++++.+..... .... .. ..-+++.++++++||+.+.
T Consensus 225 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~ 303 (306)
T TIGR02716 225 LYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVT 303 (306)
T ss_pred hhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeE
Confidence 5544332 56999999999999999987631110 0000 00 0014688899999998764
No 81
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.00 E-value=2e-09 Score=109.94 Aligned_cols=145 Identities=20% Similarity=0.306 Sum_probs=94.3
Q ss_pred CCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHh--c-CCCccccCChhhhhHHHHHHHHHcCC
Q 010274 185 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL--S-HDIIAMSLAPNDVHENQIQFALERGI 261 (514)
Q Consensus 185 g~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La--~-~~V~gvdis~~dis~a~~~~A~~rg~ 261 (514)
|..|..|...-.+...+++.... .++++|||||||+|.++...+ + ..|+++|+++..+..+. +.++.++.
T Consensus 137 g~AFGTG~H~TT~lcl~~l~~~~------~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~~~N~~ 209 (295)
T PF06325_consen 137 GMAFGTGHHPTTRLCLELLEKYV------KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENAELNGV 209 (295)
T ss_dssp TSSS-SSHCHHHHHHHHHHHHHS------STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHHHHTT-
T ss_pred CCcccCCCCHHHHHHHHHHHHhc------cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHHcCC
Confidence 45677777666666666555321 233689999999998877665 3 36999999998887776 44555565
Q ss_pred CeEEEeecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc
Q 010274 262 PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 341 (514)
Q Consensus 262 ~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~ 341 (514)
...+.+..... .....||+|+++-. . .-...++..+.++|+|||+|++|.--. ...+.+.+.+++
T Consensus 210 ~~~~~v~~~~~--~~~~~~dlvvANI~-~---~vL~~l~~~~~~~l~~~G~lIlSGIl~--------~~~~~v~~a~~~- 274 (295)
T PF06325_consen 210 EDRIEVSLSED--LVEGKFDLVVANIL-A---DVLLELAPDIASLLKPGGYLILSGILE--------EQEDEVIEAYKQ- 274 (295)
T ss_dssp TTCEEESCTSC--TCCS-EEEEEEES--H---HHHHHHHHHCHHHEEEEEEEEEEEEEG--------GGHHHHHHHHHT-
T ss_pred CeeEEEEEecc--cccccCCEEEECCC-H---HHHHHHHHHHHHhhCCCCEEEEccccH--------HHHHHHHHHHHC-
Confidence 54444332222 33489999997641 1 223568888999999999999987211 123567777777
Q ss_pred CcEEEEEecc
Q 010274 342 CWKIVSKKDQ 351 (514)
Q Consensus 342 Gf~~v~~~~~ 351 (514)
||+++.....
T Consensus 275 g~~~~~~~~~ 284 (295)
T PF06325_consen 275 GFELVEEREE 284 (295)
T ss_dssp TEEEEEEEEE
T ss_pred CCEEEEEEEE
Confidence 9998876553
No 82
>PRK14968 putative methyltransferase; Provisional
Probab=98.99 E-value=6.3e-09 Score=98.02 Aligned_cols=123 Identities=15% Similarity=0.202 Sum_probs=84.1
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCC---eEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIP---STLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~---~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
.+|||+|||+|.++..++. .+++++|+++..+..+..+. ...+.. +.+...|... ++.+++||+|+++....+
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNA-KLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYLP 102 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHH-HHcCCCCcceEEEeccccc-cccccCceEEEECCCcCC
Confidence 5799999999999998874 57788888877665554333 333332 6666676544 344568999997642211
Q ss_pred c--------------------ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 292 W--------------------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 292 ~--------------------~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
. ......+++++.++|||||.+++..+.... .+.+.++++++||++....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~--------~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 103 TEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG--------EDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred CCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC--------HHHHHHHHHHCCCeeeeee
Confidence 0 011345899999999999999987754321 2467789999999876543
No 83
>PRK14967 putative methyltransferase; Provisional
Probab=98.99 E-value=1.1e-08 Score=100.14 Aligned_cols=122 Identities=17% Similarity=0.135 Sum_probs=82.3
Q ss_pred CeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
.+|||+|||+|.++..++.. .++++|+++..+..+.. .+...+.++.+...|.... +++++||+|+++.......
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~-n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~~~ 115 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARL-NALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYVPAP 115 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCCCCC
Confidence 58999999999999888742 67888888776655543 3333455667777776542 4567899999863211111
Q ss_pred c--------------------chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEE
Q 010274 294 Q--------------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 294 ~--------------------d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~ 348 (514)
. ....++.++.++|||||.+++...... ...++.+.+++.||.....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--------~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 116 PDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--------GVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred cccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--------CHHHHHHHHHHCCCCeEEE
Confidence 1 124578899999999999998654431 1345667778888865443
No 84
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.99 E-value=1.9e-09 Score=114.22 Aligned_cols=93 Identities=22% Similarity=0.438 Sum_probs=69.0
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHc--CCCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~r--g~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
..+|||||||+|.++..++. ..|+++|+++ .+++.|+++ +..+.+...|...+ +++||.|++.. ++
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~-----~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~-~~ 238 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHYGVSVVGVTISA-----EQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVG-MF 238 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeC-ch
Confidence 35899999999999998885 3456665554 455555544 34456666666554 36899999877 57
Q ss_pred ccccc--hHHHHHHHHhhCCCCeEEEEEe
Q 010274 291 DWLQR--DGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 291 ~~~~d--~~~lL~el~RvLrPGG~lvis~ 317 (514)
+|+.. ...+++++.++|||||++++.+
T Consensus 239 ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 239 EHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred hhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 77743 4679999999999999999865
No 85
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.98 E-value=1.8e-09 Score=107.01 Aligned_cols=153 Identities=20% Similarity=0.206 Sum_probs=103.9
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCCC--CCCCCceEEEeccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLP--YPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~lp--~~~~sFDlV~~s~~ 288 (514)
..+|||+|||+|.++..++. ..++++++.+.+...++.+.+.... .++.+...|..++. ....+||+|+|+--
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 57899999999999999985 4677887777766666655554332 35778888876654 33347999999521
Q ss_pred -----------------ccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 289 -----------------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 289 -----------------~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
.++-..+.+.+++...++|||||++.+..|+. ...++..++++.+|...+....
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---------rl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---------RLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH---------HHHHHHHHHHhcCCCceEEEEe
Confidence 11111234679999999999999999988653 2457788999999987765554
Q ss_pred eEEEeccCcchhhhccCCCC-----CCCCcC
Q 010274 352 TVIWAKPISNSCYLKRVPGS-----RPPLCS 377 (514)
Q Consensus 352 ~~iw~Kp~~~~c~~~r~~~~-----~P~lC~ 377 (514)
..--.|+.+......++.+. +|||-.
T Consensus 196 ~p~~~k~A~~vLv~~~k~~~~~l~~~ppLii 226 (248)
T COG4123 196 YPKIGKAANRVLVEAIKGGKSGLKVLPPLII 226 (248)
T ss_pred cCCCCCcceEEEEEEecCCCCCceecCCEEE
Confidence 33333444555555555443 455544
No 86
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.98 E-value=7.9e-09 Score=100.82 Aligned_cols=130 Identities=21% Similarity=0.268 Sum_probs=81.7
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+|||||||+|.++..|+. ..++++|+++.++..+...... .+. .+.+..+| ++..+++||+|++.. +++
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~i~~~~~d---~~~~~~~fD~v~~~~-~l~ 138 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPE-AGLAGNITFEVGD---LESLLGRFDTVVCLD-VLI 138 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-cCCccCcEEEEcC---chhccCCcCEEEEcc-hhh
Confidence 35899999999999999984 3577777777666555533322 232 46677666 344457899999887 455
Q ss_pred cccc--hHHHHHHHHhhCCCCeEEEEEeCCCC------------C-C-Chh--HHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 292 WLQR--DGILLLELDRLLRPGGYFVYSSPEAY------------A-H-DPE--NRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 292 ~~~d--~~~lL~el~RvLrPGG~lvis~P~~~------------~-~-~~e--~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
|.++ ...++.++.+++++++.+.+ .+... . . ... ....-.++.++++++||++...+..
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~~i~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 215 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSLIFTF-APYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERI 215 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeEEEEE-CCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeec
Confidence 5443 35688888888765554443 22110 0 0 000 0001246788999999998876554
No 87
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.95 E-value=3.1e-09 Score=102.36 Aligned_cols=118 Identities=20% Similarity=0.317 Sum_probs=85.9
Q ss_pred CCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeec-CCCCCCCCCCceEEEecccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLG-TKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d-~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
+..-|||||||+|..+..|.+ +..+|+|+++.+++.++. +.....+..+| -+.+||..++||.|++.. +++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~-----~e~egdlil~DMG~GlpfrpGtFDg~ISIS-AvQ 123 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE-----RELEGDLILCDMGEGLPFRPGTFDGVISIS-AVQ 123 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH-----hhhhcCeeeeecCCCCCCCCCccceEEEee-eee
Confidence 567899999999999988874 566788888777766553 32223344445 378999999999999765 678
Q ss_pred cccc-------h----HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcE
Q 010274 292 WLQR-------D----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (514)
Q Consensus 292 ~~~d-------~----~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~ 344 (514)
|.-+ + ..++..++.+|++|++.++.. .+++....+.+...+..+||.
T Consensus 124 WLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf------Ypen~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 124 WLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF------YPENEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred eecccCccccChHHHHHHHhhhhhhhhccCceeEEEe------cccchHHHHHHHHHHHhhccC
Confidence 7632 2 337888999999999999843 334444556677778888884
No 88
>PTZ00146 fibrillarin; Provisional
Probab=98.95 E-value=1.2e-08 Score=103.66 Aligned_cols=131 Identities=12% Similarity=0.085 Sum_probs=85.5
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC---CCCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR---LPYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~---lp~~~~sFDlV~~s~ 287 (514)
..+|||+|||+|.++..+++. .|+++|+++.+. +.+++.+.++ .++.+++.|+.. +.....+||+|++..
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~-~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG-RDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADV 210 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEeC
Confidence 368999999999999999852 588998886433 3445665554 466777777643 122335899999876
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEeCCCCC-CChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~-~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
. ...+...++.++.++|||||+|++....... ..+.....+.+-.+.+++.||+.++..+.
T Consensus 211 a---~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L 272 (293)
T PTZ00146 211 A---QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTL 272 (293)
T ss_pred C---CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 2 1223346778999999999999995432111 11111122332237789999998866553
No 89
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.94 E-value=9.4e-09 Score=96.39 Aligned_cols=123 Identities=20% Similarity=0.261 Sum_probs=93.2
Q ss_pred eEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCC--eEEEeecCCCCCCCCCCceEEEecc--cc
Q 010274 218 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSR--CR 289 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~--~~~~~~d~~~lp~~~~sFDlV~~s~--~~ 289 (514)
+|||+|||.|.+...|++ ...+|+|+++..+.-|+ +.|+.++.+ +.|.+.|+..-.+..+.||+|+--. .+
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~-niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQ-NIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHH-HHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 899999999999999985 34788988888776655 677777765 8899999877677778899998522 11
Q ss_pred cccccc-----hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 290 IDWLQR-----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 290 l~~~~d-----~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+...++ +..++..+.++|+|||.|+|+.-+.- .+++.+.++..||+......
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T---------~dELv~~f~~~~f~~~~tvp 205 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT---------KDELVEEFENFNFEYLSTVP 205 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc---------HHHHHHHHhcCCeEEEEeec
Confidence 222221 24489999999999999999876542 46888888898988776544
No 90
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.93 E-value=9.9e-09 Score=98.76 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=82.2
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCC-CCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL-PYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~l-p~~~~sFDlV~~s~ 287 (514)
..+|||+|||+|.++..++. .+|+++|+++..+..+..+ ++..+ .++.+..+|.... +...+.||.|++..
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n-~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN-AEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 35899999999999887652 3688999888777655533 33334 3566777776543 33346899999643
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcE
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~ 344 (514)
...+...++.++.++|||||++++..... ....++...++++||.
T Consensus 120 ----~~~~~~~~l~~~~~~LkpgG~lv~~~~~~--------~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 120 ----GSEKLKEIISASWEIIKKGGRIVIDAILL--------ETVNNALSALENIGFN 164 (198)
T ss_pred ----CcccHHHHHHHHHHHcCCCcEEEEEeecH--------HHHHHHHHHHHHcCCC
Confidence 23456779999999999999999854321 2245777888999984
No 91
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.93 E-value=6.8e-09 Score=100.58 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=67.7
Q ss_pred CeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 217 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
.+|||||||+|.++..++. ..|+++|+++..+..+..+. ...+. .+.+..+|.........+||+|++...
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l-~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~- 151 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNI-ERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAA- 151 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEECCcccCCccCCCccEEEEccC-
Confidence 5899999999999988763 36888988887665554333 33343 367788887655444578999998763
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
.++. ..++.++|+|||+|++..
T Consensus 152 ~~~~------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 152 ASTI------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cchh------hHHHHHhcCcCcEEEEEE
Confidence 4443 357889999999999854
No 92
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.91 E-value=5.2e-09 Score=110.18 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=78.0
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCC--CCCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL--PYPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~l--p~~~~sFDlV~~s~~~l 290 (514)
..+||||||+|.++..++. ..++|+|++...+..+..+..+..-.++.+..+|+..+ .+++++||.|++.+ -.
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF-Pd 202 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF-PV 202 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC-CC
Confidence 4799999999999999984 47889999988887776554433334677888887654 47789999999766 35
Q ss_pred ccccch------HHHHHHHHhhCCCCeEEEEEe
Q 010274 291 DWLQRD------GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 291 ~~~~d~------~~lL~el~RvLrPGG~lvis~ 317 (514)
+|.... ..++.++.|+|+|||.+.+.+
T Consensus 203 PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 203 PWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 554332 469999999999999999966
No 93
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.89 E-value=8.5e-09 Score=101.10 Aligned_cols=98 Identities=16% Similarity=0.078 Sum_probs=70.3
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHH------------HcCCCeEEEeecCCCCCCC-CCCce
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFAL------------ERGIPSTLGVLGTKRLPYP-SRSFE 281 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~------------~rg~~~~~~~~d~~~lp~~-~~sFD 281 (514)
.+|||+|||.|..+.+|++ ..|+|+|+++..+..++.+... .....+.+.++|...++.. ...||
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd 118 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVD 118 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCee
Confidence 5899999999999999995 4788998888777654321110 0123467788888777533 25899
Q ss_pred EEEecccccccccch--HHHHHHHHhhCCCCeEEEE
Q 010274 282 LAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVY 315 (514)
Q Consensus 282 lV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvi 315 (514)
+|+-..+ +++++.. ..++..+.++|+|||++++
T Consensus 119 ~v~D~~~-~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 119 AVYDRAA-LIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred EEEehHh-HhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9997663 5555433 5699999999999997554
No 94
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.88 E-value=1e-08 Score=99.98 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=68.5
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
..+|||||||+|.++..++. ..|+++|+++..+..+..+. ++.+. ++.+..+|......+.+.||+|++...
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l-~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~- 154 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTL-KKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAA- 154 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCeEEEECCcccCCCcCCCcCEEEECCC-
Confidence 36899999999999988763 36888988887665555333 33343 578888887666556678999997763
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
.+. +...+.+.|||||.|++..
T Consensus 155 ~~~------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 155 GPD------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ccc------chHHHHHhhCCCcEEEEEE
Confidence 332 3346778999999999854
No 95
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.88 E-value=1.4e-08 Score=97.88 Aligned_cols=142 Identities=20% Similarity=0.313 Sum_probs=89.5
Q ss_pred eEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHH----HHHHcCCC-e-EEEeecCCCC--CC------CCCCceEE
Q 010274 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQ----FALERGIP-S-TLGVLGTKRL--PY------PSRSFELA 283 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~----~A~~rg~~-~-~~~~~d~~~l--p~------~~~sFDlV 283 (514)
+|||||||||..+.+++.+ ...+...|.|.....+. .+.+.+.+ + .-...|+..- +. ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 6999999999999999864 22334444454444321 12232321 1 1122333222 22 24689999
Q ss_pred Eecccccccccch--HHHHHHHHhhCCCCeEEEEEeCCCCCC--Ch----------------hHHHhHHHHHHHHHhcCc
Q 010274 284 HCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAH--DP----------------ENRRIWNAMYDLLKSMCW 343 (514)
Q Consensus 284 ~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~~--~~----------------e~~~~~~~l~~ll~~~Gf 343 (514)
+|.+ ++|..+-. +.+|+.+.++|++||.|++-.|..+.. .. ...+..+++.+++++.|+
T Consensus 107 ~~~N-~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 107 FCIN-MLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eehh-HHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 9999 68776544 669999999999999999988854321 11 111223589999999999
Q ss_pred EEEEEecceEEEeccCcchhhhcc
Q 010274 344 KIVSKKDQTVIWAKPISNSCYLKR 367 (514)
Q Consensus 344 ~~v~~~~~~~iw~Kp~~~~c~~~r 367 (514)
..++...+ |.|+.|+.+|
T Consensus 186 ~l~~~~~M------PANN~~Lvfr 203 (204)
T PF06080_consen 186 ELEEDIDM------PANNLLLVFR 203 (204)
T ss_pred ccCccccc------CCCCeEEEEe
Confidence 87766554 4555554443
No 96
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.88 E-value=4e-08 Score=104.21 Aligned_cols=125 Identities=14% Similarity=0.099 Sum_probs=86.2
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCC-CCCceEEEecccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRID 291 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~-~~sFDlV~~s~~~l~ 291 (514)
.+|||+|||+|.++..++. ..|+++|+++.++..+..+ ++..+.++.+..+|.....++ .++||+|+|+--.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreN-a~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKN-AADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 4799999999999988873 4688999888877766643 344456788888886544332 357999998542111
Q ss_pred cc--------------------cc----hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEE
Q 010274 292 WL--------------------QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 292 ~~--------------------~d----~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~ 347 (514)
.. .+ ...++.++.+.|+|||.+++..... .-+.+.+++++.||..++
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~---------Q~e~V~~ll~~~Gf~~v~ 402 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD---------QGAAVRGVLAENGFSGVE 402 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc---------HHHHHHHHHHHCCCcEEE
Confidence 00 01 1347777788999999999865321 134788899999998766
Q ss_pred Eecc
Q 010274 348 KKDQ 351 (514)
Q Consensus 348 ~~~~ 351 (514)
...+
T Consensus 403 v~kD 406 (423)
T PRK14966 403 TLPD 406 (423)
T ss_pred EEEc
Confidence 5443
No 97
>PLN03075 nicotianamine synthase; Provisional
Probab=98.87 E-value=7.9e-09 Score=105.19 Aligned_cols=102 Identities=10% Similarity=0.144 Sum_probs=74.6
Q ss_pred CCCeEEEECCCCchHHHH-Hh-----cCCCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCCCCCCCCceEEEec
Q 010274 215 NIRNVLDVGCGVASFGAY-LL-----SHDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCS 286 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~-La-----~~~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~lp~~~~sFDlV~~s 286 (514)
.+++|+|||||.|.++.. ++ +..++++|+++..++.+...+....+ ..+.|..+|+.+.+...+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 457899999998855433 32 23578888888777666644333233 35889999877764334689999988
Q ss_pred ccccccc-cchHHHHHHHHhhCCCCeEEEEEe
Q 010274 287 RCRIDWL-QRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 287 ~~~l~~~-~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+++++. +++..++..+.+.|+|||+|++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 445543 678899999999999999999965
No 98
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.83 E-value=2.4e-08 Score=97.36 Aligned_cols=94 Identities=16% Similarity=0.110 Sum_probs=67.9
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-----~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
..+|||||||+|.++..|+.. .|+++|+++..+..+.. .+.+.+. ++.+..+|.........+||+|++...
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~-~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~- 155 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAER-RLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAA- 155 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCC-
Confidence 358999999999999988742 38899888877665553 3333443 577888887655444468999997753
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
... +...+.+.|+|||++++..
T Consensus 156 ~~~------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 156 GPK------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred ccc------ccHHHHHhcCcCcEEEEEE
Confidence 332 3456889999999999854
No 99
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.83 E-value=2.9e-09 Score=92.76 Aligned_cols=102 Identities=25% Similarity=0.342 Sum_probs=71.2
Q ss_pred CeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCCC--CCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLP--YPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~lp--~~~~sFDlV~~s~~~l 290 (514)
.+|||+|||+|.++..++. ..++++|+++..+..+..+...... .++.+.+.|..... +++++||+|+++--..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG 81 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence 4799999999999988873 4677887777665544433333221 35788888876664 6788999999875333
Q ss_pred cccc-------chHHHHHHHHhhCCCCeEEEEEeC
Q 010274 291 DWLQ-------RDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 291 ~~~~-------d~~~lL~el~RvLrPGG~lvis~P 318 (514)
.... ....+++++.++|||||.+++..|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 82 PRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp SBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 2211 125689999999999999998765
No 100
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.81 E-value=1.8e-08 Score=83.00 Aligned_cols=98 Identities=23% Similarity=0.356 Sum_probs=68.7
Q ss_pred eEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCC-CCCCceEEEeccccccc-
Q 010274 218 NVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY-PSRSFELAHCSRCRIDW- 292 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~-~~~sFDlV~~s~~~l~~- 292 (514)
++||+|||+|.++..++. ..++++|+++.....+.............+...+...... ..++||+|++.. .+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~-~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDP-PLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEcc-ceeeh
Confidence 489999999999988885 3566676665444333211111122346666677655543 457899999888 4666
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEE
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis 316 (514)
......+++.+.+.|+|||.++++
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 666788999999999999999985
No 101
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.81 E-value=5.1e-08 Score=99.31 Aligned_cols=122 Identities=15% Similarity=0.193 Sum_probs=83.6
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccc-
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR- 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~- 289 (514)
.+|||+|||+|.++..++. ..|+++|+++..+..+..+ ++..+. ++.+..+|... ++++++||+|+++--.
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n-~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCC
Confidence 5799999999999999984 3688898888777666643 344444 46778777643 2345689999985110
Q ss_pred ----c-------cccc------------chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 290 ----I-------DWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 290 ----l-------~~~~------------d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
+ ++-+ ....++.++.++|+|||++++..... +..+.+++...||.-.
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~----------~~~v~~~~~~~~~~~~ 270 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS----------MEALEEAYPDVPFTWL 270 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC----------HHHHHHHHHhCCCcee
Confidence 0 1111 11457899999999999999866421 3467788888887655
Q ss_pred EEec
Q 010274 347 SKKD 350 (514)
Q Consensus 347 ~~~~ 350 (514)
....
T Consensus 271 ~~~~ 274 (284)
T TIGR03533 271 EFEN 274 (284)
T ss_pred eecC
Confidence 4433
No 102
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.79 E-value=5.4e-08 Score=97.71 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=81.3
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+|||+|||+|.++..++. ..++++|+++..+..+..+.......++.+...|... ++++++||+|+++.-.+.
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIP 187 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCC
Confidence 35799999999999999874 4577888877766555533331223357777777633 233578999998521110
Q ss_pred -------------c------------ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 292 -------------W------------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 292 -------------~------------~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
+ ......++.++.++|+|||++++..... .-..+.+++++.||..+
T Consensus 188 ~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~---------~~~~~~~~l~~~gf~~v 258 (275)
T PRK09328 188 EADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD---------QGEAVRALLAAAGFADV 258 (275)
T ss_pred cchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECch---------HHHHHHHHHHhCCCcee
Confidence 0 0112457888899999999999854211 12457788889999755
Q ss_pred EE
Q 010274 347 SK 348 (514)
Q Consensus 347 ~~ 348 (514)
..
T Consensus 259 ~~ 260 (275)
T PRK09328 259 ET 260 (275)
T ss_pred EE
Confidence 54
No 103
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.79 E-value=1.4e-07 Score=90.41 Aligned_cols=99 Identities=13% Similarity=0.027 Sum_probs=67.9
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC-CCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~-lp~~~~sFDlV~~s~~~l 290 (514)
..+|||+|||+|.++..++. ..|+++|+++..+..++.+..+....++.+..+|+.. ++.....+|.++...
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~--- 117 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG--- 117 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC---
Confidence 35899999999999988863 4688999888777666544333222356777776543 222223467765321
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
..+...++.++.++|+|||++++..+.
T Consensus 118 --~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 118 --GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred --CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 234467999999999999999997753
No 104
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.77 E-value=5.8e-08 Score=98.80 Aligned_cols=123 Identities=15% Similarity=0.246 Sum_probs=82.6
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccc--
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC-- 288 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~-- 288 (514)
.+|||+|||+|.++..++. ..|+++|+++..+..+..+ ++..+. ++.+..+|... ++++++||+|+++--
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n-~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEEN-AEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 4799999999999999884 4688888888777666543 333344 37788777644 344458999998510
Q ss_pred ----------cccccc------------chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHH-hcCcEE
Q 010274 289 ----------RIDWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLK-SMCWKI 345 (514)
Q Consensus 289 ----------~l~~~~------------d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~-~~Gf~~ 345 (514)
...|-+ ....++.++.+.|+|||++++...... -..+.+++. ..||..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q---------~~~~~~~~~~~~~~~~ 264 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQ---------QKSLKELLRIKFTWYD 264 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccH---------HHHHHHHHHhcCCCce
Confidence 111211 234588999999999999998664321 235667777 468866
Q ss_pred EEEec
Q 010274 346 VSKKD 350 (514)
Q Consensus 346 v~~~~ 350 (514)
+....
T Consensus 265 ~~~~~ 269 (284)
T TIGR00536 265 VENGR 269 (284)
T ss_pred eEEec
Confidence 55443
No 105
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.77 E-value=1.1e-08 Score=99.96 Aligned_cols=115 Identities=18% Similarity=0.230 Sum_probs=76.8
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeE------EEeecCCCCCCCCCCceEEEeccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPST------LGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~------~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
+.++|||||+|..+..+++. +|+++| ++++|++.|.+...... +...+...|--.+++.|+|+|..|
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD-----~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATD-----VSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeec-----CCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 47999999999766667753 677774 55667777776533221 111112223233799999999995
Q ss_pred ccccccchHHHHHHHHhhCCCCe-EEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcE
Q 010274 289 RIDWLQRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG-~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~ 344 (514)
+||.. .+.+++++.|+||+.| .+++=. +.. +.-.|.++..++.+.++.
T Consensus 110 -~HWFd-le~fy~~~~rvLRk~Gg~iavW~-----Y~d-d~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 110 -VHWFD-LERFYKEAYRVLRKDGGLIAVWN-----YND-DFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred -HHhhc-hHHHHHHHHHHcCCCCCEEEEEE-----ccC-CCcCCHHHHHHHHHHhhc
Confidence 88875 4669999999999877 555421 111 233467778888887765
No 106
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.74 E-value=5.9e-08 Score=99.59 Aligned_cols=101 Identities=16% Similarity=0.260 Sum_probs=67.1
Q ss_pred CeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHc-CCCeEEEeecCCC-CCCCCCC---ceEEEec
Q 010274 217 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKR-LPYPSRS---FELAHCS 286 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d~~~-lp~~~~s---FDlV~~s 286 (514)
.+|||+|||+|..+..|++ ..++++|+++.++..++.+..... +.++..+.+|..+ ++++... .++++..
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~ 144 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFP 144 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEe
Confidence 5799999999999988874 357777777776666554433222 3456667788655 3443322 2333333
Q ss_pred ccccccccc--hHHHHHHHHhhCCCCeEEEEEe
Q 010274 287 RCRIDWLQR--DGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 287 ~~~l~~~~d--~~~lL~el~RvLrPGG~lvis~ 317 (514)
...+++.+. ...+|+++.++|+|||.|++..
T Consensus 145 gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 145 GSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred cccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 334555543 3569999999999999999865
No 107
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.73 E-value=6.3e-08 Score=93.27 Aligned_cols=112 Identities=19% Similarity=0.285 Sum_probs=72.1
Q ss_pred CCeEEEECCCCchHHHHHhc-CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
...|-|+|||.+.++..+.. ..|...|+.... -.+..+|+..+|+++++.|++++..+++ -.
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n---------------~~Vtacdia~vPL~~~svDv~VfcLSLM--GT 135 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPN---------------PRVTACDIANVPLEDESVDVAVFCLSLM--GT 135 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-SS---------------TTEEES-TTS-S--TT-EEEEEEES-----SS
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCCC---------------CCEEEecCccCcCCCCceeEEEEEhhhh--CC
Confidence 35799999999999988764 356677665421 1356788999999999999999876432 35
Q ss_pred chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 295 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 295 d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+...++.|+.|+|||||.|+|..-..- .. ..+.+.+.++++||++.....
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAEV~SR--f~----~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAEVKSR--FE----NVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGGG---S-----HHHHHHHHHCTTEEEEEEE-
T ss_pred CcHHHHHHHHheeccCcEEEEEEeccc--Cc----CHHHHHHHHHHCCCeEEeccc
Confidence 677899999999999999999763321 11 235677889999999987543
No 108
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.71 E-value=2.5e-08 Score=95.23 Aligned_cols=131 Identities=14% Similarity=0.146 Sum_probs=96.2
Q ss_pred eccCceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHH
Q 010274 173 VVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQ 252 (514)
Q Consensus 173 ~~~g~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~ 252 (514)
+...+...|-|.|.+|-...+++.+.+. ... -.++..+.++||+|+|.|.++..++.. .-++...+++..|
T Consensus 76 ms~TdING~lgrGsMFifSe~QF~klL~----i~~--p~w~~~~~~lLDlGAGdGeit~~m~p~---feevyATElS~tM 146 (288)
T KOG3987|consen 76 MSQTDINGFLGRGSMFIFSEEQFRKLLV----IGG--PAWGQEPVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTM 146 (288)
T ss_pred hhhhccccccccCceEEecHHHHHHHHh----cCC--CccCCCCeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHH
Confidence 3466788899999999999888776543 221 234455689999999999999999864 2344555778888
Q ss_pred HHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCC-CeEEEEEe
Q 010274 253 IQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRP-GGYFVYSS 317 (514)
Q Consensus 253 ~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrP-GG~lvis~ 317 (514)
+...+..+.++.- ..+..-.+-+||+|.|.+ ++.-..++..+|+.+..+|+| +|+++++.
T Consensus 147 r~rL~kk~ynVl~----~~ew~~t~~k~dli~clN-lLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 147 RDRLKKKNYNVLT----EIEWLQTDVKLDLILCLN-LLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHhhcCCceee----ehhhhhcCceeehHHHHH-HHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 7777777654422 222222345699999988 688888899999999999999 89888643
No 109
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.70 E-value=3.6e-07 Score=91.46 Aligned_cols=120 Identities=16% Similarity=0.160 Sum_probs=79.2
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC-CCC-CCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPY-PSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~-lp~-~~~sFDlV~~s~~~l 290 (514)
.+|||+|||+|.++..++. ..|+++|+++..+..++.+. ...+ ..+..+|..+ ++. ..++||+|+++--.+
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~-~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNL-ADAG--GTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcC--CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 4799999999999998873 36888888887776655333 3333 3566677543 221 125799999763111
Q ss_pred c-------------cc--------cc----hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEE
Q 010274 291 D-------------WL--------QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (514)
Q Consensus 291 ~-------------~~--------~d----~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~ 345 (514)
. |- .+ ...++..+.++|+|||.+++..... ...++..++++.||..
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~---------~~~~v~~~l~~~g~~~ 235 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER---------QAPLAVEAFARAGLIA 235 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc---------hHHHHHHHHHHCCCCc
Confidence 0 00 01 1357788889999999999876422 1346778888899865
Q ss_pred EEE
Q 010274 346 VSK 348 (514)
Q Consensus 346 v~~ 348 (514)
...
T Consensus 236 ~~~ 238 (251)
T TIGR03704 236 RVA 238 (251)
T ss_pred eee
Confidence 543
No 110
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.68 E-value=1.6e-07 Score=91.07 Aligned_cols=96 Identities=14% Similarity=0.028 Sum_probs=66.0
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..+|||||||+|.++..|+. ..++++|+++..+..+..++.+....++.+..+|........++||+|++... .++
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~-~~~- 156 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA-APE- 156 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC-chh-
Confidence 36899999999999887764 36788888776665554333332223467777775443223478999997763 333
Q ss_pred cchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 294 QRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
+..++.+.|+|||.+++...
T Consensus 157 -----~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 157 -----IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred -----hhHHHHHhcCCCcEEEEEEc
Confidence 34567899999999998653
No 111
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.67 E-value=1.4e-07 Score=89.95 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=63.2
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC--------CCCCCceE
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp--------~~~~sFDl 282 (514)
..+|||+|||+|.++..++. ..|+++|+++.. ...++.+...|..+.+ +++++||+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~ 101 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDV 101 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence 46899999999999887763 247888887632 1234566666765432 45678999
Q ss_pred EEecccc-------cccc---cchHHHHHHHHhhCCCCeEEEEEe
Q 010274 283 AHCSRCR-------IDWL---QRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 283 V~~s~~~-------l~~~---~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
|++..+. +++. .....++.++.++|+|||++++..
T Consensus 102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9975421 1111 112568999999999999999965
No 112
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.67 E-value=1.7e-07 Score=96.48 Aligned_cols=120 Identities=14% Similarity=0.159 Sum_probs=81.0
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
.+|||+|||+|.++..++. ..|+++|+++..+..+..+ ++..+. ++.+..+|... ++++++||+|+|+--.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n-~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEIN-IERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 5799999999999999874 3688898888877666643 333443 47788877543 23456899999862100
Q ss_pred ------------cccc------------chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 291 ------------DWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 291 ------------~~~~------------d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
+|-+ ....++.++.+.|+|||++++..... ...+.+++...+|.-.
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~----------~~~~~~~~~~~~~~~~ 282 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS----------RVHLEEAYPDVPFTWL 282 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC----------HHHHHHHHhhCCCEEE
Confidence 1111 11457899999999999999865321 2346677777776544
Q ss_pred EE
Q 010274 347 SK 348 (514)
Q Consensus 347 ~~ 348 (514)
..
T Consensus 283 ~~ 284 (307)
T PRK11805 283 EF 284 (307)
T ss_pred Ee
Confidence 33
No 113
>PRK00811 spermidine synthase; Provisional
Probab=98.64 E-value=2.3e-07 Score=94.48 Aligned_cols=105 Identities=17% Similarity=0.109 Sum_probs=70.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHH-----cCCCeEEEeecCCC-CCCCCCCceEEE
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE-----RGIPSTLGVLGTKR-LPYPSRSFELAH 284 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~-----rg~~~~~~~~d~~~-lp~~~~sFDlV~ 284 (514)
.+++|||||||+|.++..++.. +|+++|+++..+..+...+... ...++.+...|... +...+++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 3578999999999999988753 4677777776655444322211 12356777777544 233457899999
Q ss_pred ecccccccccc----hHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 285 CSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 285 ~s~~~l~~~~d----~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
+.. ..++.+. ...+++.+.+.|+|||.+++.....
T Consensus 156 ~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~ 194 (283)
T PRK00811 156 VDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSP 194 (283)
T ss_pred ECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 754 2333222 2568899999999999999865433
No 114
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.62 E-value=2.2e-07 Score=101.85 Aligned_cols=124 Identities=14% Similarity=0.177 Sum_probs=82.8
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
..+|||+|||+|.++..++. ..|+++|+++..+..+..+. ...+. .+.+..+|... ++++++||+|+|+--.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~-~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNA-IKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHH-HHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 35899999999999988873 46889988887776666443 33343 46677776532 2345689999984211
Q ss_pred c-------------cccc------------chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcE
Q 010274 290 I-------------DWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (514)
Q Consensus 290 l-------------~~~~------------d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~ 344 (514)
+ .|-+ ....++.++.++|+|||.+++..... .-+.+.+++++.||.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~---------q~~~v~~~~~~~g~~ 287 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK---------QEEAVTQIFLDHGYN 287 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc---------hHHHHHHHHHhcCCC
Confidence 1 1100 11336788899999999999864211 134678888899997
Q ss_pred EEEEec
Q 010274 345 IVSKKD 350 (514)
Q Consensus 345 ~v~~~~ 350 (514)
.+....
T Consensus 288 ~~~~~~ 293 (506)
T PRK01544 288 IESVYK 293 (506)
T ss_pred ceEEEe
Confidence 665443
No 115
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.59 E-value=3.4e-07 Score=98.64 Aligned_cols=124 Identities=20% Similarity=0.221 Sum_probs=83.5
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCC----CCCCCceEEEe
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP----YPSRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp----~~~~sFDlV~~ 285 (514)
+.+|||+|||+|..+..++. ..|+++|+++..+.....+ ++..|. ++.+...|...++ +..++||.|++
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n-~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 331 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN-AQRLGLKSIKILAADSRNLLELKPQWRGYFDRILL 331 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHH-HHHcCCCeEEEEeCChhhcccccccccccCCEEEE
Confidence 36899999999999988874 3588888887777655533 344454 5677788877665 44578999995
Q ss_pred ----cc-cccccccc----------------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc-Cc
Q 010274 286 ----SR-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CW 343 (514)
Q Consensus 286 ----s~-~~l~~~~d----------------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~-Gf 343 (514)
+. .++.+.++ ...+|.++.++|||||+|++++-..+. .++ -..+..++++. +|
T Consensus 332 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~--~En---e~~v~~~l~~~~~~ 406 (434)
T PRK14901 332 DAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP--AEN---EAQIEQFLARHPDW 406 (434)
T ss_pred eCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh--hhH---HHHHHHHHHhCCCc
Confidence 21 22332222 246899999999999999998755431 222 23455666665 46
Q ss_pred EE
Q 010274 344 KI 345 (514)
Q Consensus 344 ~~ 345 (514)
++
T Consensus 407 ~~ 408 (434)
T PRK14901 407 KL 408 (434)
T ss_pred Ee
Confidence 53
No 116
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.59 E-value=4.2e-07 Score=97.78 Aligned_cols=125 Identities=21% Similarity=0.318 Sum_probs=82.5
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC--CCCCCceEEEe----
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHC---- 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp--~~~~sFDlV~~---- 285 (514)
+.+|||+|||+|..+..++. ..|+++|+++..+...+ +.+...+..+.+..+|...++ +..++||.|++
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~-~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 323 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR-ENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPC 323 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCC
Confidence 46899999999999988874 36888888887776555 344445666777888877654 34578999994
Q ss_pred ccc-cc------ccccc----------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc-CcEEE
Q 010274 286 SRC-RI------DWLQR----------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKIV 346 (514)
Q Consensus 286 s~~-~l------~~~~d----------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~-Gf~~v 346 (514)
+.. ++ .|... ...+|.++.++|||||++++++-..... ++. ..+...+++. +|+++
T Consensus 324 s~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~--Ene---~~v~~~l~~~~~~~~~ 397 (427)
T PRK10901 324 SATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE--ENE---QQIKAFLARHPDAELL 397 (427)
T ss_pred CcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh--hCH---HHHHHHHHhCCCCEEe
Confidence 321 11 12111 1358999999999999999988654321 221 2445555554 45543
No 117
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.57 E-value=1.1e-07 Score=92.28 Aligned_cols=137 Identities=19% Similarity=0.242 Sum_probs=83.2
Q ss_pred CCCCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcC-----CCeEEEeecCCCCCCCCCCceEEEeccc
Q 010274 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG-----IPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg-----~~~~~~~~d~~~lp~~~~sFDlV~~s~~ 288 (514)
....++||.|||.|+++..|+-.....+|+. +..+..++.|++.. .-..+....+++...+.++||+|++--|
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlV--Ep~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLV--EPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEE--ES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEe--ccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 3457899999999999998874333344443 44555556666432 2235555667766545579999999996
Q ss_pred ccccccch--HHHHHHHHhhCCCCeEEEEEeC----CCCCCChhH---HHhHHHHHHHHHhcCcEEEEEecceE
Q 010274 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSP----EAYAHDPEN---RRIWNAMYDLLKSMCWKIVSKKDQTV 353 (514)
Q Consensus 289 ~l~~~~d~--~~lL~el~RvLrPGG~lvis~P----~~~~~~~e~---~~~~~~l~~ll~~~Gf~~v~~~~~~~ 353 (514)
+.|+.|. -.+|+.+...|+|+|.+++-.. .....+.++ .+.-+.+.++++++|++++..+.+..
T Consensus 132 -lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~ 204 (218)
T PF05891_consen 132 -LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKG 204 (218)
T ss_dssp -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT
T ss_pred -hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccC
Confidence 5555544 5699999999999999998442 111112222 12346889999999999998877643
No 118
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.56 E-value=4.9e-07 Score=97.20 Aligned_cols=105 Identities=14% Similarity=0.150 Sum_probs=72.0
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEE--EeecCCCCCC--CCCCceEEEe--
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTL--GVLGTKRLPY--PSRSFELAHC-- 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~--~~~d~~~lp~--~~~sFDlV~~-- 285 (514)
+.+|||+|||+|..+..++. ..|+++|+++..+.... +.++..|..+.+ ..+|....++ ++++||.|++
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~-~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVY-ENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 36899999999999988874 46888888877665554 333444555433 4455444443 4578999995
Q ss_pred --c-ccccccccc----------------hHHHHHHHHhhCCCCeEEEEEeCCCC
Q 010274 286 --S-RCRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAY 321 (514)
Q Consensus 286 --s-~~~l~~~~d----------------~~~lL~el~RvLrPGG~lvis~P~~~ 321 (514)
+ ..+++..++ ...+|.++.++|||||+|++++-...
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 2 223333332 25699999999999999999986553
No 119
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.56 E-value=3.7e-07 Score=88.02 Aligned_cols=121 Identities=17% Similarity=0.255 Sum_probs=83.7
Q ss_pred eEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC-CC--CCCCCceEEEeccccc
Q 010274 218 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LP--YPSRSFELAHCSRCRI 290 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~-lp--~~~~sFDlV~~s~~~l 290 (514)
.+||||||.|.+...+|. ..++|+|+...-+..+..+..+....++.+..+|+.. +. ++++++|.|+..+ --
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F-PD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF-PD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC-CC
Confidence 699999999999999983 5789999998888777755555555578888888765 22 4568999999765 24
Q ss_pred ccccch--------HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc--CcEEEE
Q 010274 291 DWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM--CWKIVS 347 (514)
Q Consensus 291 ~~~~d~--------~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~--Gf~~v~ 347 (514)
+|.... ..++..+.++|+|||.|.+.+-. ...++.+.+.++.. +|+.+.
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~--------~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV--------EEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES---------HHHHHHHHHHHHHHSTTEEEE-
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC--------HHHHHHHHHHHHhcCcCeEEcc
Confidence 443321 55999999999999999997622 12345666677764 776653
No 120
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.56 E-value=3.7e-07 Score=89.86 Aligned_cols=100 Identities=16% Similarity=0.024 Sum_probs=74.7
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHH------------HHHcCCCeEEEeecCCCCCCC---CCC
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQF------------ALERGIPSTLGVLGTKRLPYP---SRS 279 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~------------A~~rg~~~~~~~~d~~~lp~~---~~s 279 (514)
.+||+.|||.|.-+.+|++ ..|+|+|+++..+.....+. ...++..+.+.++|...++.. .+.
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~ 124 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPV 124 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCC
Confidence 5899999999999999995 57899999888776553311 112356788999999888642 257
Q ss_pred ceEEEeccccccccc-ch-HHHHHHHHhhCCCCeEEEEEe
Q 010274 280 FELAHCSRCRIDWLQ-RD-GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 280 FDlV~~s~~~l~~~~-d~-~~lL~el~RvLrPGG~lvis~ 317 (514)
||+|+-..+ +..++ +. ..+.+.+.++|+|||.+++..
T Consensus 125 fD~VyDra~-~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 125 FDIWYDRGA-YIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred cCeeeeehh-HhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 999986553 44443 32 569999999999999988754
No 121
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.54 E-value=1.1e-07 Score=92.13 Aligned_cols=134 Identities=17% Similarity=0.249 Sum_probs=96.2
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHc---CCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~r---g~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..++|||||.|.+...|.+..|- .+.-.|.+..|++.++.. ++.....+.|.+.++|.+++||+|+++. .+||+
T Consensus 74 p~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSl-slHW~ 150 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSL-SLHWT 150 (325)
T ss_pred cceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhh-hhhhh
Confidence 46999999999999999865422 222234555566666544 4556778899999999999999999988 59999
Q ss_pred cchHHHHHHHHhhCCCCeEEEEEeCCC---CC-----CChhH---------H---HhHHHHHHHHHhcCcEEEEEecceE
Q 010274 294 QRDGILLLELDRLLRPGGYFVYSSPEA---YA-----HDPEN---------R---RIWNAMYDLLKSMCWKIVSKKDQTV 353 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~lvis~P~~---~~-----~~~e~---------~---~~~~~l~~ll~~~Gf~~v~~~~~~~ 353 (514)
.+....+.++...|||+|.|+-+.-.. |. .+.+. . ..-+.+..++.++||.......+..
T Consensus 151 NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDtDEi 230 (325)
T KOG2940|consen 151 NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDTDEI 230 (325)
T ss_pred ccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceecccce
Confidence 999999999999999999998543110 00 00000 0 1124678899999998877655543
No 122
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.54 E-value=1.1e-06 Score=83.38 Aligned_cols=118 Identities=16% Similarity=0.053 Sum_probs=83.9
Q ss_pred CCeEEEECCCCchHHHHHh----cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCC-CCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La----~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~l-p~~~~sFDlV~~s~~~l 290 (514)
..+++|||||||+++..++ ...|+++|-++..+.....+.++-...++.++.+++-.. +-. .+||.|+....
T Consensus 35 g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~-~~~daiFIGGg-- 111 (187)
T COG2242 35 GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL-PSPDAIFIGGG-- 111 (187)
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC-CCCCEEEECCC--
Confidence 3589999999999999988 357888988877666655454444445677777775433 322 27999996552
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCc-EEEE
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW-KIVS 347 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf-~~v~ 347 (514)
.+.+.+|+.+...|||||+++...- ..+......+.+++.|+ +++.
T Consensus 112 ---~~i~~ile~~~~~l~~ggrlV~nai--------tlE~~~~a~~~~~~~g~~ei~~ 158 (187)
T COG2242 112 ---GNIEEILEAAWERLKPGGRLVANAI--------TLETLAKALEALEQLGGREIVQ 158 (187)
T ss_pred ---CCHHHHHHHHHHHcCcCCeEEEEee--------cHHHHHHHHHHHHHcCCceEEE
Confidence 4567899999999999999997431 12233456677889999 4443
No 123
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.54 E-value=4.4e-07 Score=89.46 Aligned_cols=113 Identities=16% Similarity=0.254 Sum_probs=82.7
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
....|-|+|||.+.++..- ...|..+|+.+. +-.+..+|+.++|+++++.|++++..++ ...
T Consensus 180 ~~~vIaD~GCGEakiA~~~-~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CLSL--Mgt 241 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIASSE-RHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCLSL--MGT 241 (325)
T ss_pred CceEEEecccchhhhhhcc-ccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeHhh--hcc
Confidence 3457999999999887622 236777776542 2235678899999999999999866532 357
Q ss_pred chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 295 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 295 d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
+...++.|++|+|++||.|+|..-.. +..+ -..+.+.+..+||.+......
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv~S--Rf~d----v~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEVKS--RFSD----VKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEehhh--hccc----HHHHHHHHHHcCCeeeehhhh
Confidence 78889999999999999999965322 1111 235778899999988765543
No 124
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.54 E-value=3.9e-07 Score=89.17 Aligned_cols=128 Identities=18% Similarity=0.265 Sum_probs=81.5
Q ss_pred eEEEECCCCchHHHHHhc------CCCccccCChhhhhHHHHHHHHHcC----CCeEEEeec--CC--CCCCCCCCceEE
Q 010274 218 NVLDVGCGVASFGAYLLS------HDIIAMSLAPNDVHENQIQFALERG----IPSTLGVLG--TK--RLPYPSRSFELA 283 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~------~~V~gvdis~~dis~a~~~~A~~rg----~~~~~~~~d--~~--~lp~~~~sFDlV 283 (514)
+||+||||.|.....+.+ -.|.+.|+++.++ +..+++. ..+...+.| .. .-|.+.+++|+|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai-----~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI-----ELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH-----HHHHhccccchhhhcccceeccchhccCCCCcCccceE
Confidence 799999999988888774 2466777777655 4433331 112222223 22 234567899999
Q ss_pred Eecccccccccch-HHHHHHHHhhCCCCeEEEEEeCCCCC------------------CChhHH---HhHHHHHHHHHhc
Q 010274 284 HCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYSSPEAYA------------------HDPENR---RIWNAMYDLLKSM 341 (514)
Q Consensus 284 ~~s~~~l~~~~d~-~~lL~el~RvLrPGG~lvis~P~~~~------------------~~~e~~---~~~~~l~~ll~~~ 341 (514)
++.+++....++. ...+.++.++|||||.+++.+-..+. +..... -.-+++..++.++
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhc
Confidence 9888543333333 66999999999999999997643221 000000 0125888999999
Q ss_pred CcEEEEEec
Q 010274 342 CWKIVSKKD 350 (514)
Q Consensus 342 Gf~~v~~~~ 350 (514)
||..+....
T Consensus 229 gf~~~~~~~ 237 (264)
T KOG2361|consen 229 GFEEVQLEV 237 (264)
T ss_pred ccchhcccc
Confidence 998775443
No 125
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.51 E-value=6.3e-07 Score=96.89 Aligned_cols=123 Identities=19% Similarity=0.219 Sum_probs=81.1
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEe----
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHC---- 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~---- 285 (514)
+.+|||+|||+|..+..++. ..|+++|+++..+..+. +.+++.|. ++.+...|+..++ ++++||+|++
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~-~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR-SHASALGITIIETIEGDARSFS-PEEQPDAILLDAPC 328 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCC
Confidence 36899999999998877763 36888988887776655 34444455 4677788877665 4568999995
Q ss_pred cc-cccc------ccc----------chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc-CcEE
Q 010274 286 SR-CRID------WLQ----------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKI 345 (514)
Q Consensus 286 s~-~~l~------~~~----------d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~-Gf~~ 345 (514)
+. .++. |.. ....+|.++.++|||||++++++-.... .++ -..+..++++. +|..
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~--~En---e~~v~~~l~~~~~~~~ 401 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP--EEN---ELQIEAFLQRHPEFSA 401 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh--hhH---HHHHHHHHHhCCCCEE
Confidence 22 1111 111 1235899999999999999998865432 121 12445666654 4543
No 126
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.47 E-value=8.3e-07 Score=91.96 Aligned_cols=93 Identities=12% Similarity=0.051 Sum_probs=65.8
Q ss_pred CeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
.+|||||||+|.++..++. ..|+++|+++..+..+.. .+++.+. ++.+..+|....+....+||+|++... .
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~-~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g-~ 159 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR-NVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVG-V 159 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEeCChhhcccccCCccEEEECCc-h
Confidence 5899999999999998884 237888888776655543 3333343 467777776655544568999997753 3
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+. ....+.+.|+|||.+++..
T Consensus 160 ~~------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 160 DE------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred HH------hHHHHHHhcCCCCEEEEEe
Confidence 22 2345678999999998854
No 127
>PHA03411 putative methyltransferase; Provisional
Probab=98.47 E-value=8.9e-07 Score=89.25 Aligned_cols=121 Identities=12% Similarity=0.104 Sum_probs=80.3
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
.+|||+|||+|.++..++. ..|+++|+++ .+++.++++..++.+...|+..+.. +.+||+|+++....+.
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp-----~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNP-----EFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKI 139 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCcccc
Confidence 4799999999999887764 3566776655 4556666555567788888776653 4689999986533321
Q ss_pred ccc-------------------hHHHHHHHHhhCCCCeEEEEEeC--CCCCCChhHHHhHHHHHHHHHhcCcEEEE
Q 010274 293 LQR-------------------DGILLLELDRLLRPGGYFVYSSP--EAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 293 ~~d-------------------~~~lL~el~RvLrPGG~lvis~P--~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~ 347 (514)
... ...++..+..+|+|+|.+.+.-- +.|. .. -.-++..+++++.||....
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~-~s---l~~~~y~~~l~~~g~~~~~ 211 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYD-GT---MKSNKYLKWSKQTGLVTYA 211 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccccc-cc---CCHHHHHHHHHhcCcEecC
Confidence 110 24577888899999998776421 2221 10 1124778999999997643
No 128
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.46 E-value=7.3e-07 Score=89.87 Aligned_cols=104 Identities=16% Similarity=0.140 Sum_probs=72.0
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEe----
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHC---- 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~---- 285 (514)
+.+|||+|||+|..+..++. ..|+++|+++..+.....+.. ..+. ++.+...|...++...+.||.|++
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~-~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pc 150 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANIN-RCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPC 150 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHH-HcCCCcEEEecCCHHHhhhhccCCCEEEEcCCC
Confidence 35899999999999988764 368888888877765554333 3343 567777777666555567999985
Q ss_pred cc-ccccccc----------------chHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 286 SR-CRIDWLQ----------------RDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 286 s~-~~l~~~~----------------d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
+. .++...+ ....+|.++.++|||||++++++-..
T Consensus 151 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 151 SGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 21 1111111 12348999999999999999988654
No 129
>PRK04457 spermidine synthase; Provisional
Probab=98.46 E-value=4.8e-07 Score=91.18 Aligned_cols=103 Identities=14% Similarity=0.175 Sum_probs=66.2
Q ss_pred CCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHc-CCCeEEEeecCCCC-CCCCCCceEEEeccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRL-PYPSRSFELAHCSRC 288 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d~~~l-p~~~~sFDlV~~s~~ 288 (514)
.+++|||||||+|.++..++. ..++++|+++..+..+...+.... ..++.+..+|.... .-..++||+|++...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~ 145 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF 145 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence 346899999999999998874 356777766655543332222111 23567777775432 222368999997431
Q ss_pred cccccc---chHHHHHHHHhhCCCCeEEEEEe
Q 010274 289 RIDWLQ---RDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 289 ~l~~~~---d~~~lL~el~RvLrPGG~lvis~ 317 (514)
--...+ ....+++++.++|+|||.+++..
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 111111 12679999999999999999843
No 130
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=2e-06 Score=87.55 Aligned_cols=121 Identities=20% Similarity=0.247 Sum_probs=80.0
Q ss_pred eEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 218 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
+|||||||+|.++..++. ..|+++|+++..+.-+.. .|...+. +..++..|.. -+.. ++||+|+|+---+..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~-Na~~~~l~~~~~~~~dlf-~~~~-~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARE-NAERNGLVRVLVVQSDLF-EPLR-GKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHH-HHHHcCCccEEEEeeecc-cccC-CceeEEEeCCCCCCC
Confidence 799999999999999984 378899998887766663 4444453 3344444321 1223 489999986321111
Q ss_pred c-----c-------------------chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcC-cEEEE
Q 010274 293 L-----Q-------------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVS 347 (514)
Q Consensus 293 ~-----~-------------------d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~G-f~~v~ 347 (514)
- + -...++.++.+.|+|||.+++..-.. .-+.+.+++++.| |..+.
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~---------q~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT---------QGEAVKALFEDTGFFEIVE 260 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC---------cHHHHHHHHHhcCCceEEE
Confidence 1 0 11348888999999999999865221 1357889999999 66554
Q ss_pred Eec
Q 010274 348 KKD 350 (514)
Q Consensus 348 ~~~ 350 (514)
...
T Consensus 261 ~~~ 263 (280)
T COG2890 261 TLK 263 (280)
T ss_pred EEe
Confidence 443
No 131
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.45 E-value=5e-07 Score=102.90 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=85.9
Q ss_pred CCeEEEECCCCchHHHHHhc--C-CCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCC-CCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--H-DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL-PYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~-~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~l-p~~~~sFDlV~~s~~~ 289 (514)
.++|||+|||+|.++..++. + .|+++|+++..+..+..+...... ..+.+..+|+.+. .-..++||+|++.--.
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~ 618 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT 618 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence 36899999999999999884 2 488999998888777755544322 2467888885432 1114689999985311
Q ss_pred c----------ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 290 I----------DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 290 l----------~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
+ ....+...++..+.++|+|||.++++..... +....+.+.+.|+.+...+..
T Consensus 619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~---------~~~~~~~~~~~g~~~~~i~~~ 681 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG---------FKMDEEGLAKLGLKAEEITAK 681 (702)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---------CChhHHHHHhCCCeEEEEecC
Confidence 1 1122335688899999999999988764321 112256778889877755443
No 132
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.44 E-value=2.3e-06 Score=86.55 Aligned_cols=122 Identities=14% Similarity=0.114 Sum_probs=73.9
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHc----CCCeEEEeecCCC-CCCCCCCceEEEe
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKR-LPYPSRSFELAHC 285 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~r----g~~~~~~~~d~~~-lp~~~~sFDlV~~ 285 (514)
++++||+||||+|.++..++.. .++++|+++..+..+...+.... ..++.+...|... +....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3468999999999999888643 46777777655544432222111 1245555555432 1222468999997
Q ss_pred cccccccccc----hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc
Q 010274 286 SRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 341 (514)
Q Consensus 286 s~~~l~~~~d----~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~ 341 (514)
... .+..+. ...+++.+.++|+|||.+++.....+.. ...+..+.+.+++.
T Consensus 152 D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~~~~tl~~~ 206 (270)
T TIGR00417 152 DST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQ----LELITDLKRDVKEA 206 (270)
T ss_pred eCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccC----HHHHHHHHHHHHHH
Confidence 542 222221 2568899999999999999875443321 22344555555555
No 133
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.43 E-value=1.6e-06 Score=93.79 Aligned_cols=124 Identities=16% Similarity=0.216 Sum_probs=79.9
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCC--CCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp--~~~~sFDlV~~s~ 287 (514)
..+|||+|||+|..+..++. ..|+++|+++..+..+. +.+...|. ++.+..+|...++ ++ ++||+|++..
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~ 328 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDA 328 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcC
Confidence 35899999999999988874 35888888877765555 33344454 4677788876653 33 6899999632
Q ss_pred -----ccccccc------c----------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc-CcEE
Q 010274 288 -----CRIDWLQ------R----------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKI 345 (514)
Q Consensus 288 -----~~l~~~~------d----------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~-Gf~~ 345 (514)
..+.+.+ . ...+|.++.++|||||.+++++..... .++ -..+..++++. .|+.
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~--~En---e~vv~~~l~~~~~~~~ 403 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK--EEN---EEVIEAFLEEHPEFEL 403 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh--hhh---HHHHHHHHHhCCCcEE
Confidence 1111111 0 134899999999999999988755431 111 12445556654 3655
Q ss_pred E
Q 010274 346 V 346 (514)
Q Consensus 346 v 346 (514)
+
T Consensus 404 ~ 404 (444)
T PRK14902 404 V 404 (444)
T ss_pred e
Confidence 4
No 134
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.43 E-value=6.7e-07 Score=96.32 Aligned_cols=104 Identities=15% Similarity=0.191 Sum_probs=73.5
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCC-CCCCCceEEEe---
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHC--- 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp-~~~~sFDlV~~--- 285 (514)
+.+|||+|||+|..+.+++. ..|+++|+++..+.... +.+...|. ++.+...|...++ +.+++||.|++
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~-~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaP 316 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVE-KHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAP 316 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCC
Confidence 35899999999998887763 46888888887776555 33444454 4677788877765 44578999996
Q ss_pred -cc-ccccccc----------------chHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 286 -SR-CRIDWLQ----------------RDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 286 -s~-~~l~~~~----------------d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
+. ..+...+ ....+|.++.+.|||||++++++-..
T Consensus 317 Csg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 317 CTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 21 1221111 12457999999999999999988654
No 135
>PRK01581 speE spermidine synthase; Validated
Probab=98.42 E-value=4e-06 Score=87.67 Aligned_cols=126 Identities=16% Similarity=0.114 Sum_probs=81.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHH------------cCCCeEEEeecCCC-CCCCC
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE------------RGIPSTLGVLGTKR-LPYPS 277 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~------------rg~~~~~~~~d~~~-lp~~~ 277 (514)
.+++||+||||+|..+..++.. .|+.+|+++ .+++.|++ ...++.+...|+.. +.-..
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDp-----eVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~ 224 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDG-----SMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPS 224 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCH-----HHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcC
Confidence 4578999999999988888753 455665555 44455553 13466777777554 33345
Q ss_pred CCceEEEecccccccc-----cchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 278 RSFELAHCSRCRIDWL-----QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~-----~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
++||+|++... -... .....+++.+.+.|+|||.+++.....+. ....+..+.+.++++++.+.....
T Consensus 225 ~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~----~~~~~~~i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 225 SLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPAD----APLVYWSIGNTIEHAGLTVKSYHT 297 (374)
T ss_pred CCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhh----hHHHHHHHHHHHHHhCCceEEEEE
Confidence 68999997631 1111 11155899999999999999886533321 122334577888999987664443
No 136
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.42 E-value=6.9e-07 Score=87.12 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc---C--CCccccCChhhhhHHHHHHHHHcCCCeEEEe
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---H--DIIAMSLAPNDVHENQIQFALERGIPSTLGV 267 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~ 267 (514)
......+.+.+... +..+|||||||+|.+++.|+. . .|+++|..+.-...+....+.....++.+..
T Consensus 58 P~~~a~~l~~L~l~--------pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 58 PSMVARMLEALDLK--------PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp HHHHHHHHHHTTC---------TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred HHHHHHHHHHHhcC--------CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 34445555666532 236899999999999998873 2 3678888886665555444443334678888
Q ss_pred ecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 268 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 268 ~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+|....--....||.|++..+ ... .-..+.+.||+||++++-.
T Consensus 130 gdg~~g~~~~apfD~I~v~~a-~~~------ip~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 130 GDGSEGWPEEAPFDRIIVTAA-VPE------IPEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp S-GGGTTGGG-SEEEEEESSB-BSS--------HHHHHTEEEEEEEEEEE
T ss_pred cchhhccccCCCcCEEEEeec-cch------HHHHHHHhcCCCcEEEEEE
Confidence 885443224468999998764 332 2245677799999999854
No 137
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=3e-06 Score=83.95 Aligned_cols=118 Identities=17% Similarity=0.155 Sum_probs=84.5
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCC-eEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~-~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
+.+|||.|.|+|.++.+|+. .+|++.|+.......|..++......+ +.+...|..+.-+++ .||+|+.
T Consensus 95 g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~L---- 169 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFL---- 169 (256)
T ss_pred CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEE----
Confidence 46899999999999999993 467888776655555544443322223 667777777666664 8999982
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEE
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~ 348 (514)
. +++|..++..+..+|+|||.+++-.|..- +.++....+++.||..++.
T Consensus 170 -D-mp~PW~~le~~~~~Lkpgg~~~~y~P~ve--------Qv~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 170 -D-LPDPWNVLEHVSDALKPGGVVVVYSPTVE--------QVEKTVEALRERGFVDIEA 218 (256)
T ss_pred -c-CCChHHHHHHHHHHhCCCcEEEEEcCCHH--------HHHHHHHHHHhcCccchhh
Confidence 2 57888999999999999999999877541 2334445566679876543
No 138
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.38 E-value=6.5e-07 Score=93.05 Aligned_cols=105 Identities=19% Similarity=0.408 Sum_probs=69.1
Q ss_pred CCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHc----------CCCeEEEeecCCCC----CCC-
Q 010274 215 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER----------GIPSTLGVLGTKRL----PYP- 276 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~r----------g~~~~~~~~d~~~l----p~~- 276 (514)
...+|||+|||-|.-..-... ..++|+|++...+.++..+...-+ ...+.+..+|.... .+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 457899999998865544443 357899999888877775552211 12456666664322 123
Q ss_pred -CCCceEEEecccccccc-cch---HHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 277 -SRSFELAHCSRCRIDWL-QRD---GILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 277 -~~sFDlV~~s~~~l~~~-~d~---~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
...||+|-|.++ +||. .+. ..+|..+...|||||+|+.++|+.
T Consensus 142 ~~~~FDvVScQFa-lHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQFA-LHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES--GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHHH-HHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 359999999984 7775 332 449999999999999999999865
No 139
>PRK03612 spermidine synthase; Provisional
Probab=98.36 E-value=2.3e-06 Score=94.25 Aligned_cols=120 Identities=18% Similarity=0.111 Sum_probs=80.8
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHc------------CCCeEEEeecCCC-CCCCC
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER------------GIPSTLGVLGTKR-LPYPS 277 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~r------------g~~~~~~~~d~~~-lp~~~ 277 (514)
++++|||||||+|..+..++++ +++.+|+++..+ +.+++. ..++.+...|..+ +...+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi-----~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~ 371 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMT-----ELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLA 371 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHH-----HHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCC
Confidence 3578999999999999888753 456666655544 554441 1356777777654 22234
Q ss_pred CCceEEEecccccccccc-----hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcE
Q 010274 278 RSFELAHCSRCRIDWLQR-----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d-----~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~ 344 (514)
++||+|++.. ..+..+. ..++++.+.+.|||||.+++.....+.. .+.+.++.+.+++.||.
T Consensus 372 ~~fDvIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 372 EKFDVIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA----PKAFWSIEATLEAAGLA 438 (521)
T ss_pred CCCCEEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc----hHHHHHHHHHHHHcCCE
Confidence 6899999764 2332221 1458999999999999999866443322 23356788889999993
No 140
>PLN02366 spermidine synthase
Probab=98.36 E-value=4.7e-06 Score=85.92 Aligned_cols=122 Identities=15% Similarity=0.155 Sum_probs=73.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEeecCCCC--CCCCCCceEEE
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKRL--PYPSRSFELAH 284 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~----rg~~~~~~~~d~~~l--p~~~~sFDlV~ 284 (514)
.+++||+||||.|.++..++.+ .|+.+|+++..+..+...+... ...++.++.+|.... ..++++||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 3578999999999999999854 3555666654443333222111 123577777775332 12356899999
Q ss_pred ecccccccccc----hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc
Q 010274 285 CSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 341 (514)
Q Consensus 285 ~s~~~l~~~~d----~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~ 341 (514)
+.. .-++.+. ...+++.+.++|+|||.++......+... ..+..+.+.+++.
T Consensus 171 ~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~----~~~~~i~~tl~~~ 226 (308)
T PLN02366 171 VDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHM----DLIEDLIAICRET 226 (308)
T ss_pred EcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccch----HHHHHHHHHHHHH
Confidence 753 2222221 24689999999999999987554443322 2233444445544
No 141
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.34 E-value=1e-06 Score=89.41 Aligned_cols=105 Identities=18% Similarity=0.356 Sum_probs=73.3
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHc------CCCeEEEeecC------CCCCCCCCCc
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER------GIPSTLGVLGT------KRLPYPSRSF 280 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~r------g~~~~~~~~d~------~~lp~~~~sF 280 (514)
+..+||+|||-|.-.+.... ..++++||+...+.+++...-.-+ ...+.|..+|. ..+++++.+|
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~f 197 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRF 197 (389)
T ss_pred ccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCc
Confidence 35699999999976555443 356788887766655553332111 12467777774 2345566669
Q ss_pred eEEEecccccccc-cc---hHHHHHHHHhhCCCCeEEEEEeCCCC
Q 010274 281 ELAHCSRCRIDWL-QR---DGILLLELDRLLRPGGYFVYSSPEAY 321 (514)
Q Consensus 281 DlV~~s~~~l~~~-~d---~~~lL~el~RvLrPGG~lvis~P~~~ 321 (514)
|+|-|-+| +||. .+ ...+|..+.+.|||||+|+-+.|+..
T Consensus 198 DivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 198 DIVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred ceeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 99999885 7765 22 25599999999999999999998763
No 142
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.8e-06 Score=82.28 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=64.5
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
..+|||||||+|..++.|++ ..|++++..+.-...+..++. ..|. ++.+.++|...---+...||.|+...+ ...
T Consensus 73 g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~-~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaa-a~~ 150 (209)
T COG2518 73 GDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLE-TLGYENVTVRHGDGSKGWPEEAPYDRIIVTAA-APE 150 (209)
T ss_pred CCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHH-HcCCCceEEEECCcccCCCCCCCcCEEEEeec-cCC
Confidence 36899999999999999985 477888877655444443332 3344 677888874333223478999997764 333
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
++ ..+.+-||+||++++-.
T Consensus 151 vP------~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 151 VP------EALLDQLKPGGRLVIPV 169 (209)
T ss_pred CC------HHHHHhcccCCEEEEEE
Confidence 32 34567799999999854
No 143
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.31 E-value=2e-06 Score=80.57 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=62.9
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
.+|||||||+|.++..++.. .++++|+++..+...+.+... ..++.+..+|+.++++++..||.|+++. -.+ ..
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~-Py~-~~ 90 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNL-PYN-IS 90 (169)
T ss_pred CEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECC-Ccc-cH
Confidence 57999999999999999864 577887776555443322211 2357888899988888877799999653 222 21
Q ss_pred chHHHHHHHHhh--CCCCeEEEEE
Q 010274 295 RDGILLLELDRL--LRPGGYFVYS 316 (514)
Q Consensus 295 d~~~lL~el~Rv--LrPGG~lvis 316 (514)
..++..+.+. +.++|.+++.
T Consensus 91 --~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 91 --TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred --HHHHHHHHhcCCCcceEEEEEE
Confidence 2344444432 4578888874
No 144
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.30 E-value=6.2e-06 Score=89.16 Aligned_cols=121 Identities=15% Similarity=0.175 Sum_probs=81.1
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCC----CCCCCCCceEEEecccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR----LPYPSRSFELAHCSRCR 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~----lp~~~~sFDlV~~s~~~ 289 (514)
.+|||+|||+|.++..|+. ..|+++|+++.++..+..+. +..+. ++.+..+|+.. +++.+++||+|++.--
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~-~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPP- 376 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENA-RRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPP- 376 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHH-HHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcC-
Confidence 5899999999999999985 46889988888887766433 33343 57888888643 3355578999996532
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeCC-CCCCChhHHHhHHHHHHHHHhcCcEEEEEecceE
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPE-AYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTV 353 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P~-~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~~~ 353 (514)
+.. ....+..+.+ ++|++.++++..+ ... +++. .+.+.||++.+.+....
T Consensus 377 --r~g-~~~~~~~l~~-~~~~~ivyvSCnp~tla---------RDl~-~L~~~gY~l~~i~~~Dm 427 (443)
T PRK13168 377 --RAG-AAEVMQALAK-LGPKRIVYVSCNPATLA---------RDAG-VLVEAGYRLKRAGMLDM 427 (443)
T ss_pred --CcC-hHHHHHHHHh-cCCCeEEEEEeChHHhh---------ccHH-HHhhCCcEEEEEEEecc
Confidence 221 2345555555 6999999987533 322 2333 34567999887766543
No 145
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.29 E-value=4.4e-06 Score=81.08 Aligned_cols=118 Identities=15% Similarity=0.230 Sum_probs=81.3
Q ss_pred CeEEEECCCCchHHHHHhc-CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCC---CCCCceEEEeccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY---PSRSFELAHCSRCRIDW 292 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~---~~~sFDlV~~s~~~l~~ 292 (514)
-++|||||=+......-.+ -.|+.+|+.+... .+.+.|....|. ++++||+|.||. ++.+
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~---------------~I~qqDFm~rplp~~~~e~FdvIs~SL-VLNf 116 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQHP---------------GILQQDFMERPLPKNESEKFDVISLSL-VLNF 116 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCCCC---------------CceeeccccCCCCCCcccceeEEEEEE-EEee
Confidence 5899999875543332222 2466666654221 244566666555 367899999999 7999
Q ss_pred ccch---HHHHHHHHhhCCCCeE-----EEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 293 LQRD---GILLLELDRLLRPGGY-----FVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 293 ~~d~---~~lL~el~RvLrPGG~-----lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
++++ .++++.+.+.|+|+|. |+++.|..-.. ....-..+.+..+++.+||..++.+..
T Consensus 117 VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~-NSRy~~~~~l~~im~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVT-NSRYMTEERLREIMESLGFTRVKYKKS 182 (219)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhh-cccccCHHHHHHHHHhCCcEEEEEEec
Confidence 9988 5599999999999999 99988854210 000012357889999999999987654
No 146
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.28 E-value=5.7e-06 Score=83.44 Aligned_cols=133 Identities=17% Similarity=0.233 Sum_probs=90.8
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHc----C----------------------------
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----G---------------------------- 260 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~r----g---------------------------- 260 (514)
...+||--|||.|+++..++.. .+.+.+++.-|+-.. ++.... +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s--~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLAS--NFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHH--HHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 3468999999999999999854 455666665553221 222111 0
Q ss_pred ----------CCeEEEeecCCCCCCCC---CCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChh-
Q 010274 261 ----------IPSTLGVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE- 326 (514)
Q Consensus 261 ----------~~~~~~~~d~~~lp~~~---~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e- 326 (514)
.+.....+|......++ ++||+|++.+ .+.-..+.-.+|..+.++|||||+++=..|-.|.....
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 01122333333333333 6899999887 57666777889999999999999998888866554433
Q ss_pred ------HHHhHHHHHHHHHhcCcEEEEEec
Q 010274 327 ------NRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 327 ------~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
..-.++++..++++.||+++..+.
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 223689999999999999987665
No 147
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.25 E-value=3.2e-06 Score=83.84 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=67.6
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCC-C-----CCCCCceE
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-----YPSRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~l-p-----~~~~sFDl 282 (514)
.++|||||||+|..+..|+. ..++++|+++.....+..++ .+.+. .+.+..+|+.+. + .+.++||+
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~-~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFI-KKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 46899999999987776652 46889988887665555333 33343 467777776442 1 12468999
Q ss_pred EEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 283 V~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
|+.... .+....++..+.++|||||.+++..
T Consensus 148 VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 148 AFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 985431 2334568999999999999988744
No 148
>PLN02672 methionine S-methyltransferase
Probab=98.25 E-value=5.7e-06 Score=97.04 Aligned_cols=123 Identities=13% Similarity=0.130 Sum_probs=82.8
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHc--------------C--CCeEEEeecCCCCCC
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALER--------------G--IPSTLGVLGTKRLPY 275 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~r--------------g--~~~~~~~~d~~~lp~ 275 (514)
..+|||+|||+|.++..++. ..|+++|+++..+..+..+..... . .++.+..+|.....-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 35799999999999999874 368999999988877775554421 0 146788888654321
Q ss_pred C-CCCceEEEeccccc-------------cc------------c--------cch----HHHHHHHHhhCCCCeEEEEEe
Q 010274 276 P-SRSFELAHCSRCRI-------------DW------------L--------QRD----GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 276 ~-~~sFDlV~~s~~~l-------------~~------------~--------~d~----~~lL~el~RvLrPGG~lvis~ 317 (514)
. ...||+|+++---+ ++ . .+. ..++.++.++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 13699999852100 00 0 111 457888889999999999855
Q ss_pred CCCCCCChhHHHhHHHHH-HHHHhcCcEEEE
Q 010274 318 PEAYAHDPENRRIWNAMY-DLLKSMCWKIVS 347 (514)
Q Consensus 318 P~~~~~~~e~~~~~~~l~-~ll~~~Gf~~v~ 347 (514)
-.. .-+.+. +++++.||+.+.
T Consensus 279 G~~---------q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 279 GGR---------PGQAVCERLFERRGFRITK 300 (1082)
T ss_pred Ccc---------HHHHHHHHHHHHCCCCeeE
Confidence 211 124677 689999997654
No 149
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.24 E-value=8.1e-06 Score=84.48 Aligned_cols=98 Identities=19% Similarity=0.307 Sum_probs=63.1
Q ss_pred ccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--Ce
Q 010274 190 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PS 263 (514)
Q Consensus 190 ~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~--~~ 263 (514)
++...|+..+.+++........+.+...++||||||+|.+...|+. ..++++|+++..+..++.+.+...+. .+
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 3467788888888764322122233456899999999988777763 46889999988887777655554123 34
Q ss_pred EEEe-ecCCCCC----CCCCCceEEEecc
Q 010274 264 TLGV-LGTKRLP----YPSRSFELAHCSR 287 (514)
Q Consensus 264 ~~~~-~d~~~lp----~~~~sFDlV~~s~ 287 (514)
.+.. .+...+. .+++.||+|+|+-
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNP 197 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNP 197 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCC
Confidence 4432 2222221 2456899999975
No 150
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.24 E-value=1.1e-05 Score=83.38 Aligned_cols=138 Identities=17% Similarity=0.209 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHh--cCCCccccCChhhhhHHHHHHHHHcCCCeEEEee-c
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVL-G 269 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La--~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~-d 269 (514)
.++.+.+.++... ..+..|||==||||++..... +..++|.|++..++..+..++-.-+-.+..+... |
T Consensus 183 P~lAR~mVNLa~v--------~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~D 254 (347)
T COG1041 183 PRLARAMVNLARV--------KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLD 254 (347)
T ss_pred HHHHHHHHHHhcc--------ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecc
Confidence 3445555555543 223579999999999877653 6778888777666655554443332223434444 9
Q ss_pred CCCCCCCCCCceEEEecc-----ccccc--ccc-hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc
Q 010274 270 TKRLPYPSRSFELAHCSR-----CRIDW--LQR-DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 341 (514)
Q Consensus 270 ~~~lp~~~~sFDlV~~s~-----~~l~~--~~d-~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~ 341 (514)
+..+|+++++||.|+|-. ....- +.+ ...+|+.+.++|++||++++..|.. -...+...
T Consensus 255 a~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~-------------~~~~~~~~ 321 (347)
T COG1041 255 ATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRD-------------PRHELEEL 321 (347)
T ss_pred cccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCc-------------chhhHhhc
Confidence 999999988999999831 00111 111 2569999999999999999988722 12456788
Q ss_pred CcEEEEEecc
Q 010274 342 CWKIVSKKDQ 351 (514)
Q Consensus 342 Gf~~v~~~~~ 351 (514)
+|+++....+
T Consensus 322 ~f~v~~~~~~ 331 (347)
T COG1041 322 GFKVLGRFTM 331 (347)
T ss_pred CceEEEEEEE
Confidence 9988865544
No 151
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.23 E-value=3.3e-06 Score=83.28 Aligned_cols=98 Identities=18% Similarity=0.278 Sum_probs=77.4
Q ss_pred eEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCC---CCCCCCceEEEecccc
Q 010274 218 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL---PYPSRSFELAHCSRCR 289 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~l---p~~~~sFDlV~~s~~~ 289 (514)
.+||||||.|.+...+|. ..++|+++...-+..+. +.+.+.++ ++.+...|+..+ -+++++.|-|+..+.
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l-~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP- 128 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKAL-KKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP- 128 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHH-HHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-
Confidence 699999999999999994 47889999887666555 67777788 888888886543 245569999997763
Q ss_pred cccccch--------HHHHHHHHhhCCCCeEEEEEe
Q 010274 290 IDWLQRD--------GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 290 l~~~~d~--------~~lL~el~RvLrPGG~lvis~ 317 (514)
-+|.... ..+++.+.++|+|||.|.+.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 5554322 459999999999999999976
No 152
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.23 E-value=3e-06 Score=81.81 Aligned_cols=104 Identities=20% Similarity=0.374 Sum_probs=59.1
Q ss_pred CCCeEEEECCCCc----hHHHHHhc--CCCc--cccCChhhhhHHHHHHHHHc-----------------------C---
Q 010274 215 NIRNVLDVGCGVA----SFGAYLLS--HDII--AMSLAPNDVHENQIQFALER-----------------------G--- 260 (514)
Q Consensus 215 ~~~~VLDIGCGtG----~~a~~La~--~~V~--gvdis~~dis~a~~~~A~~r-----------------------g--- 260 (514)
+.-+|+..||++| +++..|.+ .... -+.|.+.|++...++.|++. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4468999999999 34444443 1111 34555556666666666542 1
Q ss_pred -------CCeEEEeecCCCCCCCCCCceEEEecccccccccch--HHHHHHHHhhCCCCeEEEEEeCC
Q 010274 261 -------IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 261 -------~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~ 319 (514)
..+.|...++.+.+.+.+.||+|+|.+. +-|.... ..++..+++.|+|||+|++....
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNV-lIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNV-LIYFDPETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SS-GGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCE-EEEeCHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 1256777776663334578999999995 4455443 66999999999999999996543
No 153
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.23 E-value=6.9e-06 Score=87.52 Aligned_cols=103 Identities=14% Similarity=0.138 Sum_probs=70.1
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC---CeEEEeecCCCCC--C--CCCCceEEEe
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRLP--Y--PSRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~---~~~~~~~d~~~lp--~--~~~sFDlV~~ 285 (514)
.++|||+|||+|.++..++. ..|+++|+++..+..+..+.+. .+. ++.+..+|+...- + ..++||+|++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~-Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL-NKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 36899999999999877552 2689999998888776644443 343 4678888865431 1 2468999997
Q ss_pred ccccccc--------ccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 286 SRCRIDW--------LQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 286 s~~~l~~--------~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
.--.+.- ..+...++..+.++|+|||.|+..+-.
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 6321110 012344666788999999999986644
No 154
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.21 E-value=1e-05 Score=79.90 Aligned_cols=119 Identities=19% Similarity=0.197 Sum_probs=72.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeE-EEeecCCCC-----CCCCCCceEEEe
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKRL-----PYPSRSFELAHC 285 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~~~~-~~~~d~~~l-----p~~~~sFDlV~~ 285 (514)
+.++|||+|||+|.|+..+++. .|+++|++..++.... .....+. +...++..+ +..-..||++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l-----~~~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKL-----RQDERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHH-----hcCCCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 3468999999999999999854 5788888776554422 2222221 222233322 212236787776
Q ss_pred cccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCC------------Chh-HHHhHHHHHHHHHhcCcEEEEE
Q 010274 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH------------DPE-NRRIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 286 s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~------------~~e-~~~~~~~l~~ll~~~Gf~~v~~ 348 (514)
|.. ..|..+.++|+| |.+++-.-+.+.- +.. ..+..+++...+.+.||.+...
T Consensus 150 S~~---------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (228)
T TIGR00478 150 SLI---------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKI 215 (228)
T ss_pred ehH---------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeE
Confidence 653 258899999999 8777544333221 111 1223456777788889987653
No 155
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.20 E-value=3.5e-06 Score=83.31 Aligned_cols=95 Identities=22% Similarity=0.263 Sum_probs=67.7
Q ss_pred CCCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 214 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
...++|||||+|+|.++..++.+ .++..|+ +..++.+++ ..++.+..+|.. -++|. +|+++.++.+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl------p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vL 168 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL------PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVL 168 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-------HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc------Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhh
Confidence 34578999999999999999853 3444443 223344444 667889988877 66774 9999999965
Q ss_pred cccccch-HHHHHHHHhhCCCC--eEEEEEeC
Q 010274 290 IDWLQRD-GILLLELDRLLRPG--GYFVYSSP 318 (514)
Q Consensus 290 l~~~~d~-~~lL~el~RvLrPG--G~lvis~P 318 (514)
++|.++. ..+|+++++.|+|| |+|+|.++
T Consensus 169 h~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 169 HDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 5554433 56999999999999 99998764
No 156
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.18 E-value=1.4e-05 Score=85.95 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=78.8
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC----CCCCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR----LPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~----lp~~~~sFDlV~~s~~~l 290 (514)
.+|||+|||+|.++..|+. ..|+++|+++.++..+..+.....-.++.+..+|+.+ +++.+++||+|++.-..
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr- 372 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPR- 372 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCC-
Confidence 5899999999999999985 4688999988887766644333322367888888654 22345679999964321
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
..-...++..+.+ ++|++.++++..+. .+..-.+.+.+.||++...+..
T Consensus 373 --~G~~~~~l~~l~~-l~~~~ivyvsc~p~---------tlard~~~l~~~gy~~~~~~~~ 421 (431)
T TIGR00479 373 --KGCAAEVLRTIIE-LKPERIVYVSCNPA---------TLARDLEFLCKEGYGITWVQPV 421 (431)
T ss_pred --CCCCHHHHHHHHh-cCCCEEEEEcCCHH---------HHHHHHHHHHHCCeeEEEEEEe
Confidence 1112446666554 89999888764221 1222234456678987665543
No 157
>PHA03412 putative methyltransferase; Provisional
Probab=98.17 E-value=5e-06 Score=82.16 Aligned_cols=90 Identities=11% Similarity=0.160 Sum_probs=60.8
Q ss_pred CeEEEECCCCchHHHHHhcC-------CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 217 RNVLDVGCGVASFGAYLLSH-------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~-------~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
.+|||+|||+|.++..++.. .|+++|+++ .+.+.|++....+.+...|+...++ +++||+|+++--.
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~-----~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY 124 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNH-----TYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPF 124 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCH-----HHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCC
Confidence 58999999999999987642 455665554 4556666555567788888776654 4689999986321
Q ss_pred cc-----c------ccchHHHHHHHHhhCCCCeE
Q 010274 290 ID-----W------LQRDGILLLELDRLLRPGGY 312 (514)
Q Consensus 290 l~-----~------~~d~~~lL~el~RvLrPGG~ 312 (514)
.. . ..-...++..+.+++++|+.
T Consensus 125 ~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 125 GKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 10 0 01124588888898888876
No 158
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.15 E-value=1.8e-05 Score=79.03 Aligned_cols=120 Identities=17% Similarity=0.237 Sum_probs=81.9
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCC---CCCceEEEe
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYP---SRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~---~~sFDlV~~ 285 (514)
+.+|||.|.|+|+++.+|+. ..|...|+...-...+..++.. .+. .+.+...|+....|. +..||.|+
T Consensus 41 G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~-~gl~~~v~~~~~Dv~~~g~~~~~~~~~Davf- 118 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER-HGLDDNVTVHHRDVCEEGFDEELESDFDAVF- 118 (247)
T ss_dssp T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-TTCCTTEEEEES-GGCG--STT-TTSEEEEE-
T ss_pred CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH-cCCCCCceeEecceecccccccccCcccEEE-
Confidence 46899999999999999983 3677787776555555544433 343 467888887544442 36799998
Q ss_pred cccccccccchHHHHHHHHhhC-CCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 286 SRCRIDWLQRDGILLLELDRLL-RPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 286 s~~~l~~~~d~~~lL~el~RvL-rPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
+. +++|..++..+.++| ||||++++-.|.. .+-.+....+++.||..+....
T Consensus 119 ----LD-lp~Pw~~i~~~~~~L~~~gG~i~~fsP~i--------eQv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 119 ----LD-LPDPWEAIPHAKRALKKPGGRICCFSPCI--------EQVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp ----EE-SSSGGGGHHHHHHHE-EEEEEEEEEESSH--------HHHHHHHHHHHHTTEEEEEEEE
T ss_pred ----Ee-CCCHHHHHHHHHHHHhcCCceEEEECCCH--------HHHHHHHHHHHHCCCeeeEEEE
Confidence 22 577888999999999 8999999987753 2234555667788998775433
No 159
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.12 E-value=2.1e-05 Score=81.29 Aligned_cols=120 Identities=16% Similarity=0.157 Sum_probs=77.9
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCC-CCCCceEEEeccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY-PSRSFELAHCSRCRIDW 292 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~-~~~sFDlV~~s~~~l~~ 292 (514)
.+|||+|||+|.++..++. ..|+++|+++.++..+. +.++..+. ++.+..+|+..+.. ..+.||+|++.-- .
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP---r 250 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP---R 250 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC---C
Confidence 5899999999999999985 46889999888877665 34444454 57888888766532 2357999996531 1
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecce
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQT 352 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (514)
. .....+.++...++|++.++++..+.- . -+.+..+ .||++...+...
T Consensus 251 ~-G~~~~~~~~l~~~~~~~ivyvsc~p~t--~------~rd~~~l---~~y~~~~~~~~D 298 (315)
T PRK03522 251 R-GIGKELCDYLSQMAPRFILYSSCNAQT--M------AKDLAHL---PGYRIERVQLFD 298 (315)
T ss_pred C-CccHHHHHHHHHcCCCeEEEEECCccc--c------hhHHhhc---cCcEEEEEEEec
Confidence 1 112233344455788888888764321 1 1233333 488887766543
No 160
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.12 E-value=1.5e-05 Score=78.26 Aligned_cols=134 Identities=20% Similarity=0.221 Sum_probs=79.7
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHc------------CCCeEEEeecCCCCCCCC-CCc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER------------GIPSTLGVLGTKRLPYPS-RSF 280 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~r------------g~~~~~~~~d~~~lp~~~-~sF 280 (514)
..+||..|||.|.-..+|++ .+|+|+|+++..+..+..+..... ...+.+.++|...++-.. ++|
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~f 117 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKF 117 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSE
T ss_pred CCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCc
Confidence 35899999999999999995 467788777666544321111100 113467788887776433 479
Q ss_pred eEEEecccccccccc-hHHHHHHHHhhCCCCeEEEEEe---CCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 281 ELAHCSRCRIDWLQR-DGILLLELDRLLRPGGYFVYSS---PEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 281 DlV~~s~~~l~~~~d-~~~lL~el~RvLrPGG~lvis~---P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
|+|+=..++....++ -..+.+.+.++|+|||.+++.+ +......+...-.-+++.+++. .+|++...+.
T Consensus 118 D~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 118 DLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp EEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred eEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 999954322222233 3679999999999999954332 1110001111112257788888 7888776554
No 161
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.11 E-value=2.4e-05 Score=75.80 Aligned_cols=121 Identities=10% Similarity=-0.018 Sum_probs=74.9
Q ss_pred CCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHH-hc--CCCccccCChhhhhHHHHHHHHHcCC-Ce
Q 010274 188 FHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYL-LS--HDIIAMSLAPNDVHENQIQFALERGI-PS 263 (514)
Q Consensus 188 F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~L-a~--~~V~gvdis~~dis~a~~~~A~~rg~-~~ 263 (514)
+....+...+.+.+.+... ....+|||+|||+|.++..+ +. ..|+++|+++..+..+..+ ++..+. ++
T Consensus 33 ~Rp~~d~v~e~l~~~l~~~-------~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~N-l~~~~~~~v 104 (199)
T PRK10909 33 LRPTTDRVRETLFNWLAPV-------IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKN-LATLKAGNA 104 (199)
T ss_pred cCcCCHHHHHHHHHHHhhh-------cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHH-HHHhCCCcE
Confidence 3555666666566555321 12258999999999999864 43 4688888887766555433 333333 57
Q ss_pred EEEeecCCC-CCCCCCCceEEEecccccccccc-hHHHHHHHHh--hCCCCeEEEEEeCC
Q 010274 264 TLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQR-DGILLLELDR--LLRPGGYFVYSSPE 319 (514)
Q Consensus 264 ~~~~~d~~~-lp~~~~sFDlV~~s~~~l~~~~d-~~~lL~el~R--vLrPGG~lvis~P~ 319 (514)
.+...|... ++...++||+|++.-- |... ...++..+.. +|+|+|.+++..+.
T Consensus 105 ~~~~~D~~~~l~~~~~~fDlV~~DPP---y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 105 RVVNTNALSFLAQPGTPHNVVFVDPP---FRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EEEEchHHHHHhhcCCCceEEEECCC---CCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 777777544 2223457999997642 2222 2345555544 47999999997654
No 162
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.10 E-value=1.8e-05 Score=79.84 Aligned_cols=150 Identities=19% Similarity=0.318 Sum_probs=98.4
Q ss_pred HHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc------CCCccccCChhhhhHHHHHHHHHcCCC--eEEEeec
Q 010274 198 ALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS------HDIIAMSLAPNDVHENQIQFALERGIP--STLGVLG 269 (514)
Q Consensus 198 ~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~------~~V~gvdis~~dis~a~~~~A~~rg~~--~~~~~~d 269 (514)
++.+++......+...+.+-+||||.||.|........ ..|.-.|+++..+.... +.++++|.. +.|...|
T Consensus 118 ~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~d 196 (311)
T PF12147_consen 118 HLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGD 196 (311)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecC
Confidence 33344333222333445667899999999987665542 24556677776665555 566677764 3788888
Q ss_pred CCCCC-CC--CCCceEEEecccccccccch---HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHH---------HhH---
Q 010274 270 TKRLP-YP--SRSFELAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFVYSSPEAYAHDPENR---------RIW--- 331 (514)
Q Consensus 270 ~~~lp-~~--~~sFDlV~~s~~~l~~~~d~---~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~---------~~~--- 331 (514)
+.+.. +. +-..++++.+. +++..+|. ...|..+.+++.|||+++++..+.....+... +.|
T Consensus 197 Afd~~~l~~l~p~P~l~iVsG-L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMR 275 (311)
T PF12147_consen 197 AFDRDSLAALDPAPTLAIVSG-LYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMR 275 (311)
T ss_pred CCCHhHhhccCCCCCEEEEec-chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEE
Confidence 64431 11 23569999888 68888875 44789999999999999998854432221110 123
Q ss_pred ----HHHHHHHHhcCcEEEEEe
Q 010274 332 ----NAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 332 ----~~l~~ll~~~Gf~~v~~~ 349 (514)
.+|.++++.+||+.+...
T Consensus 276 rRsq~EmD~Lv~~aGF~K~~q~ 297 (311)
T PF12147_consen 276 RRSQAEMDQLVEAAGFEKIDQR 297 (311)
T ss_pred ecCHHHHHHHHHHcCCchhhhe
Confidence 589999999999866543
No 163
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.04 E-value=2.8e-05 Score=66.44 Aligned_cols=99 Identities=29% Similarity=0.435 Sum_probs=66.3
Q ss_pred EEEECCCCchHH--HHHhcC--CCccccCChhhhhHHHHHHHHHcCCC-eEEEeecCCC--CCCCC-CCceEEEeccccc
Q 010274 219 VLDVGCGVASFG--AYLLSH--DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKR--LPYPS-RSFELAHCSRCRI 290 (514)
Q Consensus 219 VLDIGCGtG~~a--~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~-~~~~~~d~~~--lp~~~-~sFDlV~~s~~~l 290 (514)
+||+|||+|... ..+... .++++|++...+......... .... +.+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999854 333332 456667666555442211111 2222 4566666555 77776 489999 666556
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
++.. ....+.++.++|+|+|.+++.....
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 5555 7789999999999999999987654
No 164
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.04 E-value=1.2e-05 Score=78.99 Aligned_cols=101 Identities=19% Similarity=0.401 Sum_probs=62.5
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHH----HcCCC-------------------------
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFAL----ERGIP------------------------- 262 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~----~rg~~------------------------- 262 (514)
+..+|||||-.|.++..++. +.|.|+||++.-+..|..+.-. +....
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 46799999999999999984 5788998887766444322100 00000
Q ss_pred ------eEEE----eec-CCCCCCCCCCceEEEecc----cccccccc-hHHHHHHHHhhCCCCeEEEEE
Q 010274 263 ------STLG----VLG-TKRLPYPSRSFELAHCSR----CRIDWLQR-DGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 263 ------~~~~----~~d-~~~lp~~~~sFDlV~~s~----~~l~~~~d-~~~lL~el~RvLrPGG~lvis 316 (514)
+.+. +.+ .+-+.+....||+|.|.. ..+.|.++ ...+|+.+.++|.|||+|++.
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0000 000 111223456799999853 12333333 366999999999999999983
No 165
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.02 E-value=2.4e-05 Score=85.97 Aligned_cols=122 Identities=18% Similarity=0.190 Sum_probs=82.8
Q ss_pred CCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCC--CCCCCCceEEEecc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL--PYPSRSFELAHCSR 287 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~l--p~~~~sFDlV~~s~ 287 (514)
....+||||||.|.+...+|. ..++|+|+...-+..+.. .+.+.+. ++.+...++..+ -++++++|.|+..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~-~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLK-LAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHH-HHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 346799999999999999984 578999998876666653 3444454 455555554322 26788999999776
Q ss_pred cccccccch--------HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcC-cEEE
Q 010274 288 CRIDWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIV 346 (514)
Q Consensus 288 ~~l~~~~d~--------~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~G-f~~v 346 (514)
--+|.... ..++..+.++|||||.+.+.+-. + ..++.+...+++.+ |+..
T Consensus 426 -PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~------~--~y~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 426 -PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI------E--NYFYEAIELIQQNGNFEII 484 (506)
T ss_pred -CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC------H--HHHHHHHHHHHhCCCeEec
Confidence 35554321 45999999999999999996632 1 12334455555544 6654
No 166
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.97 E-value=3.7e-05 Score=78.47 Aligned_cols=54 Identities=15% Similarity=0.337 Sum_probs=40.2
Q ss_pred eEEEeecCCCCCCC-CCCceEEEecccccccccc--hHHHHHHHHhhCCCCeEEEEEe
Q 010274 263 STLGVLGTKRLPYP-SRSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 263 ~~~~~~d~~~lp~~-~~sFDlV~~s~~~l~~~~d--~~~lL~el~RvLrPGG~lvis~ 317 (514)
+.|...|+...+++ .+.||+|+|.++ +.|... ...++..+.+.|+|||+|++..
T Consensus 206 V~F~~~NL~~~~~~~~~~fD~I~cRNv-liyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 206 VDFQQLNLLAKQWAVPGPFDAIFCRNV-MIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred CEEEcccCCCCCCccCCCcceeeHhhH-HhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 35666666554443 578999999885 445533 4679999999999999998855
No 167
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.97 E-value=1.8e-05 Score=74.87 Aligned_cols=102 Identities=20% Similarity=0.169 Sum_probs=59.1
Q ss_pred CCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcC----CCeEEEeecCCC-C--C-CCCCCceE
Q 010274 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERG----IPSTLGVLGTKR-L--P-YPSRSFEL 282 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg----~~~~~~~~d~~~-l--p-~~~~sFDl 282 (514)
..++|||+|||+|..+..++. ..|+..|..+ .-+.....++..+ ..+.+...+=.+ . . ...+.||+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 456899999999987777764 3677777765 2223323333322 234444433111 1 1 23468999
Q ss_pred EEecccccccccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 283 V~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
|+++.+ +........++.-+.++|+|+|.++++.+.
T Consensus 123 IlasDv-~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 123 ILASDV-LYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEEecc-cchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 999985 555566688999999999999998887654
No 168
>PLN02476 O-methyltransferase
Probab=97.96 E-value=2.2e-05 Score=79.67 Aligned_cols=96 Identities=15% Similarity=0.102 Sum_probs=68.1
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCC-CC-C----CCCCceE
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-Y----PSRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~-lp-~----~~~sFDl 282 (514)
+++|||||+|+|..+.+++. ..++++|.++.....+...+ ++.|. .+.+..+++.+ ++ + ..++||+
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~-~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYY-ELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 46899999999999999884 25788888886665555333 34454 46777777533 22 1 1368999
Q ss_pred EEecccccccccchHHHHHHHHhhCCCCeEEEEE
Q 010274 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 283 V~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis 316 (514)
|+.-. .-.+...++..+.++|+|||.+++-
T Consensus 198 VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 198 AFVDA----DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEECC----CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 99443 2344567899999999999999874
No 169
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.96 E-value=2.5e-05 Score=76.46 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=67.6
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCC--eEEEe-ecCCC-CC-CCCCCceEEEe
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIP--STLGV-LGTKR-LP-YPSRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~--~~~~~-~d~~~-lp-~~~~sFDlV~~ 285 (514)
+++|||||.+.|.-+.+|+. ..++++|+++.....+..++++. |.. +.... +|+.+ +. ...++||+|+.
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a-g~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA-GVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc-CCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 46899999999999999983 35788888887776666444433 432 44444 35322 22 34589999983
Q ss_pred cccccccccchHHHHHHHHhhCCCCeEEEEE
Q 010274 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 286 s~~~l~~~~d~~~lL~el~RvLrPGG~lvis 316 (514)
-. .-.+...++..+.++|||||.+++-
T Consensus 139 Da----dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 139 DA----DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred eC----ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 32 3445577999999999999999974
No 170
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.96 E-value=1.4e-05 Score=78.06 Aligned_cols=132 Identities=17% Similarity=0.208 Sum_probs=85.3
Q ss_pred CCCeEEEECCCCchHHHHHhc--C-CCccccCChhhhhHHHHHHHHHcC---CCeEEEeecCCCC--CCCCCCceEEEec
Q 010274 215 NIRNVLDVGCGVASFGAYLLS--H-DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRL--PYPSRSFELAHCS 286 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~--~-~V~gvdis~~dis~a~~~~A~~rg---~~~~~~~~d~~~l--p~~~~sFDlV~~s 286 (514)
.+.+|||...|-|.+++..++ + .|+.++.+++-+.-+.++= -.++ ..+.++.+|+.+. .|+|.+||+|+--
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNP-wSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNP-WSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCC-CCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 346899999999999988774 3 6777777766553222210 0111 1356777775543 4788999999853
Q ss_pred ccccccccc--hHHHHHHHHhhCCCCeEEEEEe--CCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 287 RCRIDWLQR--DGILLLELDRLLRPGGYFVYSS--PEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 287 ~~~l~~~~d--~~~lL~el~RvLrPGG~lvis~--P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
--.+.+... -+.+.+|++|+|||||.++--+ |..-.+.. .....+.+.++++||.++....
T Consensus 213 PPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~---d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 213 PPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGL---DLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred CCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccC---ChhHHHHHHHHhcCceeeeeeh
Confidence 322222222 2669999999999999998533 33211111 2245788899999999776544
No 171
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.93 E-value=3.2e-05 Score=75.28 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=67.7
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCC-CC-----CCCCCceE
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-----YPSRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~-lp-----~~~~sFDl 282 (514)
+++||||||++|.-+.+|+. ..|+++|+++.....+. +..++.|. .+.+..+++.+ ++ ...++||+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~-~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR-ENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH-HHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH-HHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 36899999999999999983 46888888886554444 34444443 56777777543 12 12358999
Q ss_pred EEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 283 V~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
|+.-. .-.+...++..+.++|+|||.+++-.
T Consensus 125 VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 99443 23445678889999999999999854
No 172
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.91 E-value=9.5e-05 Score=78.33 Aligned_cols=120 Identities=15% Similarity=0.129 Sum_probs=78.0
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCC-CCCCCceEEEeccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp-~~~~sFDlV~~s~~~l~~ 292 (514)
.+|||+|||+|.++..++. ..|+++|+++..+..+.. .++..+. ++.+..+|+.... ....+||+|++.-- .
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~-N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP---r 310 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQ-SAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP---R 310 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHH-HHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC---C
Confidence 5799999999999999884 468899999888766663 3444444 6788888865432 11246999986532 2
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecce
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQT 352 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (514)
..-...++..+. .++|++.++++..+.- .-+.+..+ .||++...+...
T Consensus 311 ~G~~~~~l~~l~-~~~p~~ivyvsc~p~T--------laRDl~~L---~gy~l~~~~~~D 358 (374)
T TIGR02085 311 RGIGKELCDYLS-QMAPKFILYSSCNAQT--------MAKDIAEL---SGYQIERVQLFD 358 (374)
T ss_pred CCCcHHHHHHHH-hcCCCeEEEEEeCHHH--------HHHHHHHh---cCceEEEEEEec
Confidence 111234555554 4799999998763321 12344444 589887766543
No 173
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.90 E-value=2.2e-05 Score=82.58 Aligned_cols=97 Identities=19% Similarity=0.297 Sum_probs=78.4
Q ss_pred eEEEECCCCchHHHHHh---cCCCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 218 NVLDVGCGVASFGAYLL---SHDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La---~~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
.++|+|||.|....+++ ..++++++.++..............- ....++..+....|+++++||.+.+.. +..|.
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld-~~~~~ 191 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE-VVCHA 191 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe-ecccC
Confidence 69999999999888877 46788888888777666543333221 123447778889999999999999887 68899
Q ss_pred cchHHHHHHHHhhCCCCeEEEE
Q 010274 294 QRDGILLLELDRLLRPGGYFVY 315 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~lvi 315 (514)
++...++.|+.|+++|||+++.
T Consensus 192 ~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 192 PDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred CcHHHHHHHHhcccCCCceEEe
Confidence 9999999999999999999997
No 174
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.89 E-value=8.6e-05 Score=74.20 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=73.0
Q ss_pred cHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHh----cCCCccccCChhhhhHHHHHHHHHcCCC--eE
Q 010274 191 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGIP--ST 264 (514)
Q Consensus 191 ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La----~~~V~gvdis~~dis~a~~~~A~~rg~~--~~ 264 (514)
..+.+.+.+.+.++.... .+...+||+|||+|.++..|+ +..|+++|++..++.-+.. .|+..+.. +.
T Consensus 129 ETEE~V~~Vid~~~~~~~-----~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~e-N~qr~~l~g~i~ 202 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEH-----SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKE-NAQRLKLSGRIE 202 (328)
T ss_pred cHHHHHHHHHHHHhhhhh-----cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHH-HHHHHhhcCceE
Confidence 345666666666553321 223479999999999998887 3567888887777655543 33332222 22
Q ss_pred EE----eec-CCCCCCCCCCceEEEecccccccc-------------------------cchHHHHHHHHhhCCCCeEEE
Q 010274 265 LG----VLG-TKRLPYPSRSFELAHCSRCRIDWL-------------------------QRDGILLLELDRLLRPGGYFV 314 (514)
Q Consensus 265 ~~----~~d-~~~lp~~~~sFDlV~~s~~~l~~~-------------------------~d~~~lL~el~RvLrPGG~lv 314 (514)
+. ..+ ....+...+++|+++|+---+..- .....++.-+.|.|+|||.++
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred EEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 22 112 223345568999999853111100 011225667789999999999
Q ss_pred EEeC
Q 010274 315 YSSP 318 (514)
Q Consensus 315 is~P 318 (514)
+..-
T Consensus 283 le~~ 286 (328)
T KOG2904|consen 283 LELV 286 (328)
T ss_pred EEec
Confidence 8664
No 175
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.83 E-value=7.7e-05 Score=75.36 Aligned_cols=103 Identities=15% Similarity=0.244 Sum_probs=64.7
Q ss_pred CCCeEEEECCCCc----hHHHHHhcCCC----ccccCChhhhhHHHHHHHHHc---------CC----------------
Q 010274 215 NIRNVLDVGCGVA----SFGAYLLSHDI----IAMSLAPNDVHENQIQFALER---------GI---------------- 261 (514)
Q Consensus 215 ~~~~VLDIGCGtG----~~a~~La~~~V----~gvdis~~dis~a~~~~A~~r---------g~---------------- 261 (514)
+.-+|.-+||+|| +++..|.+... ..+.|.+.|++...++.|+.. ++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3568999999999 44444443211 134445555555555555432 11
Q ss_pred ---------CeEEEeecCCCCCCCCCCceEEEecccccccccch--HHHHHHHHhhCCCCeEEEEEeC
Q 010274 262 ---------PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 262 ---------~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P 318 (514)
.+.|...|....++..+.||+|+|-+. +-|...+ ..++..++..|+|||+|++-..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNV-LIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNV-LIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcce-EEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 134444454333424467999999995 5555443 5699999999999999999543
No 176
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.74 E-value=1.9e-05 Score=79.35 Aligned_cols=98 Identities=28% Similarity=0.252 Sum_probs=69.2
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d 295 (514)
...+||+|||.|-.+..=-...+++.|+ +...+..++..+.. ....+|+..+|+.+.+||.+++.. ++||+..
T Consensus 46 gsv~~d~gCGngky~~~~p~~~~ig~D~-----c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsia-vihhlsT 118 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVNPLCLIIGCDL-----CTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIA-VIHHLST 118 (293)
T ss_pred cceeeecccCCcccCcCCCcceeeecch-----hhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhh-hhhhhhh
Confidence 3569999999996643211223445544 44444555554443 566788999999999999999766 6777754
Q ss_pred h---HHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 296 D---GILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 296 ~---~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
. ..+++|+.|+|||||...+.....
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 4 559999999999999988766443
No 177
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.73 E-value=4.8e-05 Score=82.29 Aligned_cols=95 Identities=22% Similarity=0.292 Sum_probs=61.3
Q ss_pred CCeEEEECCCCchHHHHHhc--------CCCccccCChhhhhHHHHHHHHHc--CCCeEEEeecCCCCCCCCCCceEEEe
Q 010274 216 IRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--------~~V~gvdis~~dis~a~~~~A~~r--g~~~~~~~~d~~~lp~~~~sFDlV~~ 285 (514)
...|||||||+|.++...+. ..|.+++-++......+ +..+.. +..+.++.+|++++..+ .+.|+|++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGDKVTVIHGDMREVELP-EKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEE
Confidence 46799999999988755442 36778887776553333 222333 34688999999988876 48999996
Q ss_pred cccccccccc---hHHHHHHHHhhCCCCeEEE
Q 010274 286 SRCRIDWLQR---DGILLLELDRLLRPGGYFV 314 (514)
Q Consensus 286 s~~~l~~~~d---~~~lL~el~RvLrPGG~lv 314 (514)
-. +....+ ..+.|....|.|||||.++
T Consensus 265 El--LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 EL--LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ec--cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 32 222211 1347888999999999887
No 178
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.71 E-value=4.2e-05 Score=78.95 Aligned_cols=96 Identities=17% Similarity=0.289 Sum_probs=65.3
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCC--eEEEeecCCCCCCCCCCceEEEecc---
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSR--- 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~--~~~~~~d~~~lp~~~~sFDlV~~s~--- 287 (514)
.++|||||||+|.++..-+. +.|.++|.+.. ..-..+.++..+.. +.+..+.++++.+|..+.|+|++-.
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~i--a~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSI--ADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHH--HHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 46899999999998887764 46888887754 34444666666654 4556666666655567999999632
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEE
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFV 314 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lv 314 (514)
+++ +-.-.+.+|-.=.+.|+|||.++
T Consensus 139 ~Ll-~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLL-YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHH-HhhhhhhhhhhhhhccCCCceEc
Confidence 111 11112445666679999999987
No 179
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=8.8e-05 Score=70.62 Aligned_cols=119 Identities=15% Similarity=0.096 Sum_probs=76.8
Q ss_pred CCCeEEEECCCCchHHHHHh--c-CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLL--S-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La--~-~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..++|+|+|||||.++...+ + +.|+++|+++..+..+. +.+.+.+..+.+...|+.+.. ..||.++.+--.-.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r-~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIAR-ANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHH-HHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 34689999999998766544 4 67999999997765444 555556667899998887765 56898887532111
Q ss_pred ccc-chHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 292 WLQ-RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 292 ~~~-d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
+.. ....+|....++- ..+.+....- ..+-+++..+.+|+.+....
T Consensus 121 ~~rhaDr~Fl~~Ale~s----~vVYsiH~a~--------~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 121 QRRHADRPFLLKALEIS----DVVYSIHKAG--------SRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred ccccCCHHHHHHHHHhh----heEEEeeccc--------cHHHHHHHHHhcCCeEEEEE
Confidence 111 1234666665554 3444432221 23456788999998776554
No 180
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.63 E-value=0.00015 Score=72.94 Aligned_cols=68 Identities=15% Similarity=0.105 Sum_probs=48.6
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~ 287 (514)
..+|||||||+|.++..|+.. .++++|+++..+........ . ..++.+..+|+..++++ .||.|+++.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~-~-~~~v~ii~~D~~~~~~~--~~d~Vv~Nl 99 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEI-A-AGNVEIIEGDALKVDLP--EFNKVVSNL 99 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhc-c-CCCEEEEEeccccCCch--hceEEEEcC
Confidence 368999999999999999863 57777776655544332221 1 23578888898887765 489999764
No 181
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.62 E-value=9.4e-05 Score=73.97 Aligned_cols=95 Identities=14% Similarity=0.058 Sum_probs=64.6
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCC-CCC------CCCCce
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKR-LPY------PSRSFE 281 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~-lp~------~~~sFD 281 (514)
.++|||||+++|.-+.+|+. ..++++|..+.....+...+ .+.| ..+.+..+++.+ ++- ..++||
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~-~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVI-QKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHH-HHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 46899999999999888873 36888888775544444333 3334 346777776433 221 136899
Q ss_pred EEEecccccccccchHHHHHHHHhhCCCCeEEEE
Q 010274 282 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 315 (514)
Q Consensus 282 lV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvi 315 (514)
+|+.-. .-.....++..+.++|+|||.+++
T Consensus 159 ~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 159 FIFVDA----DKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEEecC----CHHHhHHHHHHHHHhcCCCeEEEE
Confidence 999543 233345688888999999999886
No 182
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.61 E-value=0.00069 Score=64.86 Aligned_cols=142 Identities=19% Similarity=0.216 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHh----cCCCccccCChhhhhHHHHHHHHHcCCC-eEEEe
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGIP-STLGV 267 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La----~~~V~gvdis~~dis~a~~~~A~~rg~~-~~~~~ 267 (514)
+-+.+++.+.+.... .+.... .+++|||+|.|.=+..|+ +.+++-+|-...-.+ -..+.+.+-+.. +.+..
T Consensus 29 ~~~~~Hi~DSL~~~~-~~~~~~--~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~-FL~~~~~~L~L~nv~v~~ 104 (184)
T PF02527_consen 29 EIWERHILDSLALLP-FLPDFG--KKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVA-FLKEVVRELGLSNVEVIN 104 (184)
T ss_dssp HHHHHHHHHHHGGGG-CS-CCC--SEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHH-HHHHHHHHHT-SSEEEEE
T ss_pred HHHHHHHHHHHHhhh-hhccCC--ceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHH-HHHHHHHHhCCCCEEEEE
Confidence 444556665554322 122222 279999999997766665 345666666554321 122334444654 77777
Q ss_pred ecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEE
Q 010274 268 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 268 ~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~ 347 (514)
..++. +....+||+|++.. +.....++.-+.+.|++||.+++--- +.......+.....+..+.+...
T Consensus 105 ~R~E~-~~~~~~fd~v~aRA-----v~~l~~l~~~~~~~l~~~G~~l~~KG------~~~~~El~~~~~~~~~~~~~~~~ 172 (184)
T PF02527_consen 105 GRAEE-PEYRESFDVVTARA-----VAPLDKLLELARPLLKPGGRLLAYKG------PDAEEELEEAKKAWKKLGLKVLS 172 (184)
T ss_dssp S-HHH-TTTTT-EEEEEEES-----SSSHHHHHHHHGGGEEEEEEEEEEES------S--HHHHHTHHHHHHCCCEEEEE
T ss_pred eeecc-cccCCCccEEEeeh-----hcCHHHHHHHHHHhcCCCCEEEEEcC------CChHHHHHHHHhHHHHhCCEEee
Confidence 77776 44557899999543 23456788999999999999887431 11122344566677777777665
Q ss_pred Eec
Q 010274 348 KKD 350 (514)
Q Consensus 348 ~~~ 350 (514)
...
T Consensus 173 v~~ 175 (184)
T PF02527_consen 173 VPE 175 (184)
T ss_dssp EEE
T ss_pred ecc
Confidence 443
No 183
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.60 E-value=0.00013 Score=73.81 Aligned_cols=67 Identities=16% Similarity=0.113 Sum_probs=47.8
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEec
Q 010274 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCS 286 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s 286 (514)
.+|||||||+|.++..|++. .|+++|+++.++.....+.. ..++.+..+|+..+++++..+|.|+++
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHHHcCcceEEEe
Confidence 57999999999999999853 67788777665544432211 246788899988887764335888855
No 184
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.58 E-value=0.00038 Score=65.07 Aligned_cols=101 Identities=16% Similarity=0.067 Sum_probs=75.2
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC-----CCCCCceEEEecccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----YPSRSFELAHCSRCRID 291 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp-----~~~~sFDlV~~s~~~l~ 291 (514)
.-|||+|.|||-++..++.+.+---++...+.+........++...+.++.+|+..+. +.+..||.|+|..-++.
T Consensus 50 lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~ 129 (194)
T COG3963 50 LPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLN 129 (194)
T ss_pred CeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecccccc
Confidence 4699999999999999997655555555556666666666666667778888876654 45678999998765555
Q ss_pred cccch-HHHHHHHHhhCCCCeEEEEEe
Q 010274 292 WLQRD-GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 292 ~~~d~-~~lL~el~RvLrPGG~lvis~ 317 (514)
..... -++|+++...|++||-++-.+
T Consensus 130 ~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 130 FPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred CcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 44333 468999999999999998644
No 185
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.57 E-value=0.0003 Score=66.96 Aligned_cols=121 Identities=20% Similarity=0.212 Sum_probs=76.0
Q ss_pred CCeEEEECCCCchHHHHHh--cCCCc-----------cccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCCCCCCCc
Q 010274 216 IRNVLDVGCGVASFGAYLL--SHDII-----------AMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSF 280 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La--~~~V~-----------gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp~~~~sF 280 (514)
...+||--||+|++....+ ...+. |.|+++..+..+..+ +...+. .+.+.+.|+.++++.++++
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N-~~~ag~~~~i~~~~~D~~~l~~~~~~~ 107 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAREN-LKAAGVEDYIDFIQWDARELPLPDGSV 107 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHH-HHHTT-CGGEEEEE--GGGGGGTTSBS
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHH-HHhcccCCceEEEecchhhcccccCCC
Confidence 3579999999999986654 33444 888888887666644 344444 3678888999999777899
Q ss_pred eEEEecccccccccc---h----HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 281 ELAHCSRCRIDWLQR---D----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 281 DlV~~s~~~l~~~~d---~----~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
|.|++.--.-.-... . ..+++++.++|++...++++.. ..+.+.++..+|+......
T Consensus 108 d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~-------------~~~~~~~~~~~~~~~~~~~ 171 (179)
T PF01170_consen 108 DAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSN-------------RELEKALGLKGWRKRKLYN 171 (179)
T ss_dssp CEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESC-------------CCHHHHHTSTTSEEEEEEE
T ss_pred CEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC-------------HHHHHHhcchhhceEEEEE
Confidence 999985310000111 1 3478999999999444444331 1346677777887766544
No 186
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00071 Score=65.39 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=60.9
Q ss_pred CeEEEECCCCchHHHHHh---c---CCCccccCChhhhhHHHHHHHHH----------cCCCeEEEeecCCCCCCCCCCc
Q 010274 217 RNVLDVGCGVASFGAYLL---S---HDIIAMSLAPNDVHENQIQFALE----------RGIPSTLGVLGTKRLPYPSRSF 280 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La---~---~~V~gvdis~~dis~a~~~~A~~----------rg~~~~~~~~d~~~lp~~~~sF 280 (514)
.+.||||.|+|.++..++ . ..+.|+|..+.-+..+..+.-+. ......++++|.....-+...|
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~Y 163 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPY 163 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCc
Confidence 469999999999888776 1 22356665543332221111100 0124577888887776677899
Q ss_pred eEEEecccccccccchHHHHHHHHhhCCCCeEEEEE
Q 010274 281 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 281 DlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis 316 (514)
|.|||..++ ....+++...|++||.+++-
T Consensus 164 DaIhvGAaa-------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 164 DAIHVGAAA-------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ceEEEccCc-------cccHHHHHHhhccCCeEEEe
Confidence 999987532 24677888889999999983
No 187
>PLN02823 spermine synthase
Probab=97.51 E-value=0.00082 Score=70.20 Aligned_cols=97 Identities=19% Similarity=0.206 Sum_probs=63.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHc---------CCCeEEEeecCCC-CCCCCCCc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKR-LPYPSRSF 280 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~r---------g~~~~~~~~d~~~-lp~~~~sF 280 (514)
.+++||.||+|.|..+..++.. .|+.+|+++..+ +.|++. ..++.+...|... +...+++|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv-----~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~y 177 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVV-----DFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKF 177 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHH-----HHHHHhcccccccccCCceEEEEChhHHHHhhCCCCc
Confidence 4578999999999999887753 356666655444 444432 2356677777543 23345789
Q ss_pred eEEEecccccccc---c---chHHHHH-HHHhhCCCCeEEEEEe
Q 010274 281 ELAHCSRCRIDWL---Q---RDGILLL-ELDRLLRPGGYFVYSS 317 (514)
Q Consensus 281 DlV~~s~~~l~~~---~---d~~~lL~-el~RvLrPGG~lvis~ 317 (514)
|+|++-. .-... + -..++++ .+.+.|+|||.+++-.
T Consensus 178 DvIi~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 178 DVIIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cEEEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999652 11110 0 1245777 8999999999998743
No 188
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.41 E-value=0.00029 Score=74.83 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=67.8
Q ss_pred CeEEEECCCCchHHHHHhc-C---CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 217 RNVLDVGCGVASFGAYLLS-H---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-~---~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
.+|||++||+|.++..++. . .|+++|+++..+..+..+.....-....+...|+..+....+.||+|+..- +
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP----~ 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP----F 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----C
Confidence 4799999999999999863 2 588898888777655544333322234567777654322145799998542 1
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
..+..++..+.+.+++||.+.++..
T Consensus 135 -Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 135 -GSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred -CCcHHHHHHHHHHhcCCCEEEEEec
Confidence 3345688888888999999999864
No 189
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.34 E-value=0.00055 Score=66.39 Aligned_cols=126 Identities=16% Similarity=0.117 Sum_probs=78.4
Q ss_pred eeccCceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc----CCCccccCChhh
Q 010274 172 MVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPND 247 (514)
Q Consensus 172 v~~~g~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~d 247 (514)
.++.|-.+.++-....|..+...-...+.+.+. ...+|||+-||.|.|+..++. ..|.++|+.|..
T Consensus 68 ~~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~----------~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a 137 (200)
T PF02475_consen 68 HKENGIRFKVDLSKVYFSPRLSTERRRIANLVK----------PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDA 137 (200)
T ss_dssp EEETTEEEEEETTTS---GGGHHHHHHHHTC------------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHH
T ss_pred EEeCCEEEEEccceEEEccccHHHHHHHHhcCC----------cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHH
Confidence 456666777776777788776655555554432 235899999999999999885 358999999977
Q ss_pred hhHHHHHHHHHcCCC--eEEEeecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEE
Q 010274 248 VHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV 314 (514)
Q Consensus 248 is~a~~~~A~~rg~~--~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lv 314 (514)
+.-.. +.++..+.. +....+|...+.. .+.||-|++.. . .....+|..+.+++|+||.+-
T Consensus 138 ~~~L~-~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l--p---~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 138 VEYLK-ENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL--P---ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHHH-HHHHHTT-TTTEEEEES-GGG----TT-EEEEEE----T---SSGGGGHHHHHHHEEEEEEEE
T ss_pred HHHHH-HHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC--h---HHHHHHHHHHHHHhcCCcEEE
Confidence 65444 444444443 5667788777654 68999999653 2 222358889999999999874
No 190
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.34 E-value=0.00056 Score=70.19 Aligned_cols=69 Identities=20% Similarity=0.329 Sum_probs=49.7
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHc-CCCeEEEeecCCCCCCCCCCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d~~~lp~~~~sFDlV~~s 286 (514)
..+|||||||+|.++..|++ ..|+++|+++..+.....+++... ..++.+..+|+...+++ .||.|+++
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaN 108 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVAN 108 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEec
Confidence 35799999999999999985 468888888776655553333221 23578888888766654 68998865
No 191
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.31 E-value=0.00099 Score=72.58 Aligned_cols=104 Identities=20% Similarity=0.287 Sum_probs=67.0
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCC-eEEEeecCCCCC-CCCCCceEEE----
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLP-YPSRSFELAH---- 284 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~-~~~~~~d~~~lp-~~~~sFDlV~---- 284 (514)
+.+|||++||.|.=+.+++. ..+++.|++..-+.... +.++..|.. +.+...|...+. ...+.||.|+
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~-~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaP 192 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH-ANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAP 192 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCC
Confidence 46899999999988877763 35777777665443333 333344553 455556655542 2235799999
Q ss_pred eccc-cc--------ccccc--------hHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 285 CSRC-RI--------DWLQR--------DGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 285 ~s~~-~l--------~~~~d--------~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
||.. ++ .|.+. ...+|..+.+.|||||+|+.++-..
T Consensus 193 CSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 193 CSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 5531 11 11111 1458999999999999999988654
No 192
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.31 E-value=0.00031 Score=70.55 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=51.8
Q ss_pred EEeecCCCC-CCCC-----CCceEEEecccccccccch---HHHHHHHHhhCCCCeEEEEEeCC---CCCCC----hhHH
Q 010274 265 LGVLGTKRL-PYPS-----RSFELAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFVYSSPE---AYAHD----PENR 328 (514)
Q Consensus 265 ~~~~d~~~l-p~~~-----~sFDlV~~s~~~l~~~~d~---~~lL~el~RvLrPGG~lvis~P~---~~~~~----~e~~ 328 (514)
++..|..+. |+.. ..||+|++++|+-.-..+. ...++++.++|||||.|++..-- .|.-. ....
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~ 217 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLP 217 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEeccccc
Confidence 445565443 3332 3599999998733333444 45899999999999999986521 11000 0000
Q ss_pred HhHHHHHHHHHhcCcEEEEEe
Q 010274 329 RIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 329 ~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
-.-+.+++.++++||.+...+
T Consensus 218 l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 218 LNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp B-HHHHHHHHHHTTEEEEEEE
T ss_pred CCHHHHHHHHHHcCCEEEecc
Confidence 112578899999999988766
No 193
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.27 E-value=0.0015 Score=69.53 Aligned_cols=128 Identities=14% Similarity=0.017 Sum_probs=83.8
Q ss_pred CCeEEEECCCCchHHHHHh--cC-CCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCC-C---CCCCCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLL--SH-DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL-P---YPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La--~~-~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~l-p---~~~~sFDlV~~s 286 (514)
+++|||+=|=||.|+.+.+ ++ .|+++|++...+.-+..++..... ....++++|+... . -...+||+|+.-
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 4789999999999998887 44 899999888877777655544332 2367888885432 2 233589999973
Q ss_pred ccc--------cccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 287 RCR--------IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 287 ~~~--------l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
--. ..-..+...++..+.++|+|||.+++++......... ..+.+...+...+....
T Consensus 298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~---f~~~i~~a~~~~~~~~~ 362 (393)
T COG1092 298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDL---FLEIIARAAAAAGRRAQ 362 (393)
T ss_pred CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHH---HHHHHHHHHHhcCCcEE
Confidence 211 1112334568999999999999999988654322222 12344455555554433
No 194
>PRK04148 hypothetical protein; Provisional
Probab=97.27 E-value=0.0011 Score=60.25 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=51.9
Q ss_pred CCeEEEECCCCch-HHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCC-CCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVAS-FGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~-~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~-~~sFDlV~~s~~~l~ 291 (514)
..++||||||+|. ++..|++ ..|+++|+++ ..++.+++.+. .+.+.|..+-.+. -+.+|+|++.+.
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~-----~aV~~a~~~~~--~~v~dDlf~p~~~~y~~a~liysirp--- 86 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFDVIVIDINE-----KAVEKAKKLGL--NAFVDDLFNPNLEIYKNAKLIYSIRP--- 86 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHhCC--eEEECcCCCCCHHHHhcCCEEEEeCC---
Confidence 4689999999995 8888875 4566665555 45566666654 4556665554432 256999997763
Q ss_pred cccchHHHHHHHHhhC
Q 010274 292 WLQRDGILLLELDRLL 307 (514)
Q Consensus 292 ~~~d~~~lL~el~RvL 307 (514)
.++....+.++.+.+
T Consensus 87 -p~el~~~~~~la~~~ 101 (134)
T PRK04148 87 -PRDLQPFILELAKKI 101 (134)
T ss_pred -CHHHHHHHHHHHHHc
Confidence 233344555555544
No 195
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.27 E-value=0.0017 Score=68.52 Aligned_cols=119 Identities=14% Similarity=0.124 Sum_probs=73.5
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCC-C-CC--------------C
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL-P-YP--------------S 277 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~l-p-~~--------------~ 277 (514)
.++||++||+|.++..|+. ..|+++|+++.++..+.. .+...+. ++.+..+|+.+. + +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~-N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQY-NIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 3699999999999998885 468999998888766663 3444444 577887776442 1 10 1
Q ss_pred CCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecce
Q 010274 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQT 352 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (514)
..||+|+.--- ...-...+++.+.+ |++.++++..+. . .-+.+..+. + ||++...+...
T Consensus 287 ~~~D~v~lDPP---R~G~~~~~l~~l~~---~~~ivyvSC~p~------t--larDl~~L~-~-gY~l~~v~~~D 345 (362)
T PRK05031 287 YNFSTIFVDPP---RAGLDDETLKLVQA---YERILYISCNPE------T--LCENLETLS-Q-THKVERFALFD 345 (362)
T ss_pred CCCCEEEECCC---CCCCcHHHHHHHHc---cCCEEEEEeCHH------H--HHHHHHHHc-C-CcEEEEEEEcc
Confidence 25899985431 11111334454443 788888866331 1 123455444 3 89887766543
No 196
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.26 E-value=0.0016 Score=62.53 Aligned_cols=98 Identities=14% Similarity=0.014 Sum_probs=61.4
Q ss_pred CeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCC-CC-C-CCC-CceEEEecc
Q 010274 217 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-Y-PSR-SFELAHCSR 287 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~-lp-~-~~~-sFDlV~~s~ 287 (514)
.++||++||+|.++..++.+ .|+++|.++..+.....+.. ..+. ++.+...|+.+ +. + ... .||+|+.--
T Consensus 51 ~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~-~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLA-LLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH-HhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 57999999999999998843 68888888876655553333 3333 46777777633 22 1 122 478887432
Q ss_pred ccccccc-chHHHHHHHH--hhCCCCeEEEEEeC
Q 010274 288 CRIDWLQ-RDGILLLELD--RLLRPGGYFVYSSP 318 (514)
Q Consensus 288 ~~l~~~~-d~~~lL~el~--RvLrPGG~lvis~P 318 (514)
.+.. ....++..+. .+|+++|.+++..+
T Consensus 130 ---Py~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 130 ---PFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred ---CCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 1211 1233444443 47899999988654
No 197
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0023 Score=60.69 Aligned_cols=122 Identities=16% Similarity=0.230 Sum_probs=80.0
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccc-
Q 010274 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR- 289 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~- 289 (514)
+..+||||||+|..+..|+.. ...+.|++|... ++..+.|+.++..+..+..|...- ...++.|+++.+.-.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 457999999999999988842 346789998765 444577777777766666664322 122788888754210
Q ss_pred -------------cccc--cc----hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEE
Q 010274 290 -------------IDWL--QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 290 -------------l~~~--~d----~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~ 347 (514)
..|. .+ .+.++..+..+|.|.|.|++..-... .-.++.+.++..||....
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N--------~p~ei~k~l~~~g~~~~~ 190 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN--------KPKEILKILEKKGYGVRI 190 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc--------CHHHHHHHHhhcccceeE
Confidence 1111 11 14477888899999999998653221 123666788898986543
No 198
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.24 E-value=0.0015 Score=65.35 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=46.0
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCce---EEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFE---LAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFD---lV~~s 286 (514)
..+|||||||+|.++..|+. ..++++|+++..+..+..... ...++.+..+|+..++++ .|| +|+++
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~--~~~~v~v~~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLS--LYERLEVIEGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhC--cCCcEEEEECchhcCChh--HcCCcceEEEc
Confidence 46899999999999999985 357777776655433321111 134677888888888765 466 66644
No 199
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.24 E-value=0.0037 Score=63.54 Aligned_cols=120 Identities=19% Similarity=0.128 Sum_probs=68.4
Q ss_pred CCCCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHc---CCCeEE--Eeec--CCCCCCCCCCce
Q 010274 214 GNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER---GIPSTL--GVLG--TKRLPYPSRSFE 281 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~r---g~~~~~--~~~d--~~~lp~~~~sFD 281 (514)
-.+++|||+|||+|.....+.+ ..++++|.+ +.+.+.++.- ...... .... ....++. ..|
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s-----~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~D 104 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRS-----PEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDD 104 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCC-----HHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCc
Confidence 3467899999999976555443 234455544 4444444332 111110 0111 1122332 349
Q ss_pred EEEecccccccccch--HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEE
Q 010274 282 LAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (514)
Q Consensus 282 lV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~ 347 (514)
+|++++. +.-+++. ..+++.+.+.+.+ +|+|..|... ...+...++.+.+.+.|+.++.
T Consensus 105 Lvi~s~~-L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~----~Gf~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 105 LVIASYV-LNELPSAARAELVRSLWNKTAP--VLVLVEPGTP----AGFRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred EEEEehh-hhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh----HHHHHHHHHHHHHhhCCCceEC
Confidence 9999995 4445442 3366666666655 8888887652 3334455777778777877765
No 200
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.24 E-value=0.002 Score=65.66 Aligned_cols=104 Identities=16% Similarity=0.119 Sum_probs=67.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC---------CCeEEEeecCCCC-CCCCCCc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG---------IPSTLGVLGTKRL-PYPSRSF 280 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg---------~~~~~~~~d~~~l-p~~~~sF 280 (514)
.+++||=||-|.|..++.++.. +++.+||+ ++.++.+++.. .++.+...|.... .-..++|
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID-----~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~f 150 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEID-----PAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKF 150 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcC-----HHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcC
Confidence 3479999999999999999864 45566554 45556666542 3345566664332 2222489
Q ss_pred eEEEeccccccccc----chHHHHHHHHhhCCCCeEEEEEeCCCCCCC
Q 010274 281 ELAHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYAHD 324 (514)
Q Consensus 281 DlV~~s~~~l~~~~----d~~~lL~el~RvLrPGG~lvis~P~~~~~~ 324 (514)
|+|++-. .-.--+ ....+++.+.+.|+++|.++.-.-..+...
T Consensus 151 DvIi~D~-tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 151 DVIIVDS-TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred CEEEEcC-CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence 9999643 222111 126799999999999999998754444333
No 201
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.20 E-value=0.0049 Score=60.39 Aligned_cols=143 Identities=12% Similarity=0.110 Sum_probs=87.9
Q ss_pred cHHHHHHHHHHHhcCCCCcCCCCCC-CCeEEEECCCCchHHHHHh----cCCCccccCChhhhhHHHH-HHHHHcCCC-e
Q 010274 191 GADKYILALARMLKFPSDKLNNGGN-IRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQI-QFALERGIP-S 263 (514)
Q Consensus 191 ga~~y~~~l~~ll~~~~~~l~~~~~-~~~VLDIGCGtG~~a~~La----~~~V~gvdis~~dis~a~~-~~A~~rg~~-~ 263 (514)
..+-|.+++.+.+..... ... ..+++|||+|.|.=+..|+ +.+|+-+|-...-+ +.+ +...+-+.+ +
T Consensus 46 ~~e~~~rHilDSl~~~~~----~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~--~FL~~~~~eL~L~nv 119 (215)
T COG0357 46 PEELWQRHILDSLVLLPY----LDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI--AFLREVKKELGLENV 119 (215)
T ss_pred HHHHHHHHHHHHhhhhhc----ccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH--HHHHHHHHHhCCCCe
Confidence 344556666655543221 111 4689999999998777766 33455554433222 222 233445665 7
Q ss_pred EEEeecCCCCCCCCCC-ceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcC
Q 010274 264 TLGVLGTKRLPYPSRS-FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC 342 (514)
Q Consensus 264 ~~~~~d~~~lp~~~~s-FDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~G 342 (514)
.++...++...-. .. ||+|.|.. +.+...++.=+..++|+||.++.- +.......+.+.+......+
T Consensus 120 ~i~~~RaE~~~~~-~~~~D~vtsRA-----va~L~~l~e~~~pllk~~g~~~~~------k~~~~~~e~~e~~~a~~~~~ 187 (215)
T COG0357 120 EIVHGRAEEFGQE-KKQYDVVTSRA-----VASLNVLLELCLPLLKVGGGFLAY------KGLAGKDELPEAEKAILPLG 187 (215)
T ss_pred EEehhhHhhcccc-cccCcEEEeeh-----ccchHHHHHHHHHhcccCCcchhh------hHHhhhhhHHHHHHHHHhhc
Confidence 8887777776532 23 99998543 244566788888999999987641 22233344667888888888
Q ss_pred cEEEEEecc
Q 010274 343 WKIVSKKDQ 351 (514)
Q Consensus 343 f~~v~~~~~ 351 (514)
+.+......
T Consensus 188 ~~~~~~~~~ 196 (215)
T COG0357 188 GQVEKVFSL 196 (215)
T ss_pred CcEEEEEEe
Confidence 887765544
No 202
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.19 E-value=0.0019 Score=63.41 Aligned_cols=95 Identities=18% Similarity=0.144 Sum_probs=65.8
Q ss_pred CeEEEECCCCchHHHHHh-----cCCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCC-CC-----CCCCCceEE
Q 010274 217 RNVLDVGCGVASFGAYLL-----SHDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-----YPSRSFELA 283 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La-----~~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~-lp-----~~~~sFDlV 283 (514)
+++||||.=||.-+..+| +..|+++|+......... +..+..|. .+.+.++.+.+ ++ .+.++||+|
T Consensus 75 k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~-~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 75 KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGL-ELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred ceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhH-HHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 689999977775555444 357889999877665553 44444454 35666665322 21 356899999
Q ss_pred EecccccccccchHHHHHHHHhhCCCCeEEEEE
Q 010274 284 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 284 ~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis 316 (514)
+ +-++-.+...+..++.++||+||.+++-
T Consensus 154 F----vDadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 154 F----VDADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred E----EccchHHHHHHHHHHHhhcccccEEEEe
Confidence 8 3445555667999999999999999973
No 203
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.00018 Score=66.71 Aligned_cols=134 Identities=14% Similarity=0.285 Sum_probs=79.4
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccC---ChhhhhHHHHHHHHHcCC-----CeEEEeec--CCCCCCCCCCceEEEec
Q 010274 217 RNVLDVGCGVASFGAYLLSHDIIAMSL---APNDVHENQIQFALERGI-----PSTLGVLG--TKRLPYPSRSFELAHCS 286 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~V~gvdi---s~~dis~a~~~~A~~rg~-----~~~~~~~d--~~~lp~~~~sFDlV~~s 286 (514)
++||++|.|--.++..|....+...++ ++++.+-..++....++. .+...... ..+......+||+|+|+
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 679999999555544443221111122 233333333333333321 11111111 11222344689999999
Q ss_pred ccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc-eEEEecc
Q 010274 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ-TVIWAKP 358 (514)
Q Consensus 287 ~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~-~~iw~Kp 358 (514)
.|++ +.+.-+.++..+.+.|+|.|..++..|.-- +....+.+.....||.+...++. ..+||+-
T Consensus 111 DClF-fdE~h~sLvdtIk~lL~p~g~Al~fsPRRg-------~sL~kF~de~~~~gf~v~l~enyde~iwqrh 175 (201)
T KOG3201|consen 111 DCLF-FDEHHESLVDTIKSLLRPSGRALLFSPRRG-------QSLQKFLDEVGTVGFTVCLEENYDEAIWQRH 175 (201)
T ss_pred cchh-HHHHHHHHHHHHHHHhCcccceeEecCccc-------chHHHHHHHHHhceeEEEecccHhHHHHHHH
Confidence 9843 445557799999999999999998887532 22456778889999998776654 5577654
No 204
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.10 E-value=0.0044 Score=64.49 Aligned_cols=117 Identities=11% Similarity=0.091 Sum_probs=73.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
.+.++|||||++|.|+..|.++ .|+++|..+.+. . ......+.....+..+...+.+.+|+++|-.
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~--~-----L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDm----- 278 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ--S-----LMDTGQVEHLRADGFKFRPPRKNVDWLVCDM----- 278 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH--h-----hhCCCCEEEEeccCcccCCCCCCCCEEEEec-----
Confidence 4568999999999999999964 577777544221 1 1223456666666544432257899999875
Q ss_pred ccchHHHHHHHHhhCCCC--eEEEEEeCCCCCCC-hhHHHhHHHHHHHHHhcCc
Q 010274 293 LQRDGILLLELDRLLRPG--GYFVYSSPEAYAHD-PENRRIWNAMYDLLKSMCW 343 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPG--G~lvis~P~~~~~~-~e~~~~~~~l~~ll~~~Gf 343 (514)
...|..+.+-+.+.|..| ..+++..--..... ++-....+.+...+.+.|.
T Consensus 279 ve~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~ 332 (357)
T PRK11760 279 VEKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGI 332 (357)
T ss_pred ccCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 345667777777777666 45665543222222 2223334456677777775
No 205
>PRK00536 speE spermidine synthase; Provisional
Probab=97.07 E-value=0.0042 Score=62.66 Aligned_cols=114 Identities=12% Similarity=0.110 Sum_probs=72.1
Q ss_pred CCCCeEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHc---------CCCeEEEeecCCCCCCCCCCceE
Q 010274 214 GNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRLPYPSRSFEL 282 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~r---------g~~~~~~~~d~~~lp~~~~sFDl 282 (514)
+.+++||=||.|.|..++.++++ +|+-+|+++ ..++.+++- .+++.+.. ...+ -..++||+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~-----~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~--~~~~~fDV 142 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADE-----KILDSFISFFPHFHEVKNNKNFTHAK-QLLD--LDIKKYDL 142 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCH-----HHHHHHHHHCHHHHHhhcCCCEEEee-hhhh--ccCCcCCE
Confidence 45689999999999999999975 455555544 445555552 22333332 1111 12368999
Q ss_pred EEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 283 V~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
|++-. . ....+.+.+.|.|+|||.++......+.. ...+..+.+.+++ .|..+
T Consensus 143 IIvDs-~-----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~----~~~~~~i~~~l~~-~F~~v 195 (262)
T PRK00536 143 IICLQ-E-----PDIHKIDGLKRMLKEDGVFISVAKHPLLE----HVSMQNALKNMGD-FFSIA 195 (262)
T ss_pred EEEcC-C-----CChHHHHHHHHhcCCCcEEEECCCCcccC----HHHHHHHHHHHHh-hCCce
Confidence 99553 1 33568899999999999999865444322 1223455555555 46544
No 206
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.04 E-value=0.0024 Score=67.19 Aligned_cols=117 Identities=12% Similarity=0.099 Sum_probs=70.8
Q ss_pred eEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCC-C-------C---C-----CC
Q 010274 218 NVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL-P-------Y---P-----SR 278 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~l-p-------~---~-----~~ 278 (514)
+|||++||+|.++..|+. ..|+++|+++.++..+..+ +...+. ++.+..+|+.++ + + . ..
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n-~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYN-IAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHH-HHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 599999999999999885 4689999988887666643 444444 577877776442 1 1 0 12
Q ss_pred CceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 279 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 279 sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
.||+|+..-- ...-...++..+. +|++.++++..+. ..-+++..+.+ +|++...+..
T Consensus 279 ~~d~v~lDPP---R~G~~~~~l~~l~---~~~~ivYvsC~p~--------tlaRDl~~L~~--~Y~l~~v~~~ 335 (353)
T TIGR02143 279 NCSTIFVDPP---RAGLDPDTCKLVQ---AYERILYISCNPE--------TLKANLEQLSE--THRVERFALF 335 (353)
T ss_pred CCCEEEECCC---CCCCcHHHHHHHH---cCCcEEEEEcCHH--------HHHHHHHHHhc--CcEEEEEEEc
Confidence 3798884321 1111133444443 4788888875331 11234554442 3877766554
No 207
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.03 E-value=0.0035 Score=65.03 Aligned_cols=95 Identities=20% Similarity=0.197 Sum_probs=66.8
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecC-CCCCCCCCCceEEEeccccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~-~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
....+|+|.|.|..+..+.. .+|.+++++...+.++..+.+ ..+..+-+|. ++.| +-|+|++-.+++||
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~----~gV~~v~gdmfq~~P----~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA----PGVEHVAGDMFQDTP----KGDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc----CCcceecccccccCC----CcCeEEEEeecccC
Confidence 56899999999999998875 246677776555544433332 2355555553 3344 23699999976666
Q ss_pred ccch-HHHHHHHHhhCCCCeEEEEEeC
Q 010274 293 LQRD-GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 293 ~~d~-~~lL~el~RvLrPGG~lvis~P 318 (514)
.++. ..+|+++...|+|||.+++...
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 5433 6799999999999999998764
No 208
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.01 E-value=0.0034 Score=62.78 Aligned_cols=125 Identities=15% Similarity=0.185 Sum_probs=76.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHc----CCCeEEEeecCCCC-CCCCC-CceEEE
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRL-PYPSR-SFELAH 284 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~r----g~~~~~~~~d~~~l-p~~~~-sFDlV~ 284 (514)
++++||=||-|.|..+..+... .++.+|+++.-+..+..-+.... ..++.++..|.... .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 4679999999999999999864 46667666654433322222111 24677777775332 11223 899999
Q ss_pred ecccccccccc----hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcE
Q 010274 285 CSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (514)
Q Consensus 285 ~s~~~l~~~~d----~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~ 344 (514)
.-.. -...+. ...+++.+.+.|+|||.+++-....+. . ......+.+.+++....
T Consensus 156 ~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~-~---~~~~~~i~~tl~~~F~~ 214 (246)
T PF01564_consen 156 VDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFL-H---PELFKSILKTLRSVFPQ 214 (246)
T ss_dssp EESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTT-T---HHHHHHHHHHHHTTSSE
T ss_pred EeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCccc-c---hHHHHHHHHHHHHhCCc
Confidence 6431 111111 257999999999999999986533321 1 22355667777877663
No 209
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.98 E-value=0.0056 Score=63.90 Aligned_cols=153 Identities=15% Similarity=0.084 Sum_probs=101.2
Q ss_pred ccCceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc--C-CCccccCChhhhhH
Q 010274 174 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--H-DIIAMSLAPNDVHE 250 (514)
Q Consensus 174 ~~g~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~-~V~gvdis~~dis~ 250 (514)
.+|-.|.++-...+|..+...-...++++... +.+|||+=||.|.|+..++. + .|.++|++|..+.-
T Consensus 157 E~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~----------GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~ 226 (341)
T COG2520 157 ENGCRFKVDVAKVYFSPRLSTERARVAELVKE----------GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEY 226 (341)
T ss_pred cCCEEEEEchHHeEECCCchHHHHHHHhhhcC----------CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHH
Confidence 34445555555666777766555555555542 35899999999999999884 3 38899999987755
Q ss_pred HHHHHHHHcCCC-eEEEeecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHH
Q 010274 251 NQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRR 329 (514)
Q Consensus 251 a~~~~A~~rg~~-~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~ 329 (514)
...+....+-.. +....+|.......-+.||-|++.. ..+...++..+.+.+++||.+-+..-.......+ .
T Consensus 227 L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~-----p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~--~ 299 (341)
T COG2520 227 LKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL-----PKSAHEFLPLALELLKDGGIIHYYEFVPEDDIEE--R 299 (341)
T ss_pred HHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC-----CCcchhhHHHHHHHhhcCcEEEEEeccchhhccc--c
Confidence 554433333222 5678888877775557899999554 3344568999999999999998754221100000 1
Q ss_pred hHHHHHHHHHhcCc
Q 010274 330 IWNAMYDLLKSMCW 343 (514)
Q Consensus 330 ~~~~l~~ll~~~Gf 343 (514)
....+.....+.|+
T Consensus 300 ~~~~i~~~~~~~~~ 313 (341)
T COG2520 300 PEKRIKSAARKGGY 313 (341)
T ss_pred hHHHHHHHHhhccC
Confidence 34577777888876
No 210
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.89 E-value=0.003 Score=67.97 Aligned_cols=98 Identities=23% Similarity=0.405 Sum_probs=74.3
Q ss_pred eEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc-
Q 010274 218 NVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL- 293 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~- 293 (514)
++|-+|||.-.+...+.+ ..|+.+|+++..++......+++ .....+...|...+.|++++||+|+--. .++.+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~-~~~~~~~~~d~~~l~fedESFdiVIdkG-tlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE-RPEMQMVEMDMDQLVFEDESFDIVIDKG-TLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC-CcceEEEEecchhccCCCcceeEEEecC-cccccc
Confidence 799999999999888874 57888988888876665555422 2346788889999999999999999755 34433
Q ss_pred cch---------HHHHHHHHhhCCCCeEEEEEe
Q 010274 294 QRD---------GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 294 ~d~---------~~lL~el~RvLrPGG~lvis~ 317 (514)
.+. ...+.++.|+|+|||+++..+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 221 236889999999999977543
No 211
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.0092 Score=64.45 Aligned_cols=120 Identities=19% Similarity=0.174 Sum_probs=79.4
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCC---CCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP---SRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~---~~sFDlV~~s~~~l 290 (514)
..++||+=||.|.|+..|+. ..|+|+++++.++..+..+.+.....++.|..+++++.... ...||.|+..--
T Consensus 294 ~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPP-- 371 (432)
T COG2265 294 GERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPP-- 371 (432)
T ss_pred CCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCC--
Confidence 35899999999999999995 57999999999998887554444445688888887766532 357899984320
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEE
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~ 348 (514)
-..-...+++.+. .++|-..+++|-.+. .+.+=...+.+.|+++.+.
T Consensus 372 -R~G~~~~~lk~l~-~~~p~~IvYVSCNP~---------TlaRDl~~L~~~gy~i~~v 418 (432)
T COG2265 372 -RAGADREVLKQLA-KLKPKRIVYVSCNPA---------TLARDLAILASTGYEIERV 418 (432)
T ss_pred -CCCCCHHHHHHHH-hcCCCcEEEEeCCHH---------HHHHHHHHHHhCCeEEEEE
Confidence 0000123555544 457777888876432 1333345567778765443
No 212
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.86 E-value=0.0022 Score=67.96 Aligned_cols=96 Identities=9% Similarity=0.100 Sum_probs=68.1
Q ss_pred CeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCC-CCCCCceEEEecccc
Q 010274 217 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHCSRCR 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp-~~~~sFDlV~~s~~~ 289 (514)
-+|||+.||+|..+..++. ..|+++|+++..+.....+. +..+. ++.+...|+..+- .....||+|..--
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~-~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNV-EYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHH-HHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 4799999999999999874 24788999887776555433 33333 4566666654432 1235799998432
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
+ ..+..++..+.+.+++||.+.++..
T Consensus 123 --f-Gs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 123 --F-GTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred --C-CCcHHHHHHHHHhcccCCEEEEEec
Confidence 2 3445799999999999999999753
No 213
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.84 E-value=0.0022 Score=65.77 Aligned_cols=119 Identities=17% Similarity=0.205 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc-----------CCCccccCChhhhhHHHHHHHHHcCC
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----------HDIIAMSLAPNDVHENQIQFALERGI 261 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-----------~~V~gvdis~~dis~a~~~~A~~rg~ 261 (514)
....+.+.+++.. ....+|||-.||+|.|...+.. ..+.|+|+++....-+..+.... +.
T Consensus 32 ~~i~~l~~~~~~~--------~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~-~~ 102 (311)
T PF02384_consen 32 REIVDLMVKLLNP--------KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH-GI 102 (311)
T ss_dssp HHHHHHHHHHHTT---------TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT-TH
T ss_pred HHHHHHHHhhhhc--------cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh-cc
Confidence 3444556666632 2335799999999998777653 35677888776665555444332 22
Q ss_pred ---CeEEEeecCCCCCCC--CCCceEEEeccccccc--c------------------cchHHHHHHHHhhCCCCeEEEEE
Q 010274 262 ---PSTLGVLGTKRLPYP--SRSFELAHCSRCRIDW--L------------------QRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 262 ---~~~~~~~d~~~lp~~--~~sFDlV~~s~~~l~~--~------------------~d~~~lL~el~RvLrPGG~lvis 316 (514)
...+...|....+.. ...||+|+++--.... . .....++..+.+.|++||++++.
T Consensus 103 ~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 103 DNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp HCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 123556665444332 4689999985211111 0 01124888999999999999998
Q ss_pred eCCC
Q 010274 317 SPEA 320 (514)
Q Consensus 317 ~P~~ 320 (514)
.|..
T Consensus 183 lp~~ 186 (311)
T PF02384_consen 183 LPNG 186 (311)
T ss_dssp EEHH
T ss_pred ecch
Confidence 8764
No 214
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.81 E-value=0.0083 Score=61.34 Aligned_cols=73 Identities=12% Similarity=0.199 Sum_probs=54.3
Q ss_pred CCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChh-------HH-HhHHHHHHHHHhcCcEEEEEe
Q 010274 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE-------NR-RIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e-------~~-~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
++||+|+..+ .+.-..+.-+++..+..+|||||+++=..|-.|....+ .. -..+++..+++..||++++.+
T Consensus 258 ~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 258 GSYDVVVTCF-FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CccceEEEEE-EeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 3699998776 46555666779999999999999999877754432211 11 246789999999999999877
Q ss_pred cc
Q 010274 350 DQ 351 (514)
Q Consensus 350 ~~ 351 (514)
..
T Consensus 337 ~I 338 (369)
T KOG2798|consen 337 GI 338 (369)
T ss_pred ee
Confidence 43
No 215
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.75 E-value=0.00097 Score=61.57 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=56.1
Q ss_pred CCCCCCCCCCceEEEecccccccccch--HHHHHHHHhhCCCCeEEEEEeCCCCCC-------------------ChhHH
Q 010274 270 TKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAH-------------------DPENR 328 (514)
Q Consensus 270 ~~~lp~~~~sFDlV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~~-------------------~~e~~ 328 (514)
....+|.+++.|+|+|.+ +++|+.-. ..++++++|.|||||+|-++.|+.... +....
T Consensus 38 s~e~~F~dns~d~iyaeH-vlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v 116 (185)
T COG4627 38 SNESMFEDNSVDAIYAEH-VLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIV 116 (185)
T ss_pred hhhccCCCcchHHHHHHH-HHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHH
Confidence 455679999999999988 67776433 558999999999999999999854211 11112
Q ss_pred HhHHHHHHHHHhcCcEEE
Q 010274 329 RIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 329 ~~~~~l~~ll~~~Gf~~v 346 (514)
..++.+.+.+.++||.+-
T Consensus 117 ~t~r~m~n~~m~~~~~~k 134 (185)
T COG4627 117 KTMRMMFNGFMDAGFVVK 134 (185)
T ss_pred HHHHHHHHHHHhhhheeh
Confidence 355678888888888543
No 216
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.70 E-value=0.0012 Score=60.38 Aligned_cols=71 Identities=15% Similarity=0.219 Sum_probs=54.6
Q ss_pred CCeEEEECCCCchHHHHHh---cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLL---SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La---~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~ 287 (514)
++.++|+|||.|-+....+ ...|+|+|+.+..+.... +.|.+-.+++.+.+++...+-+..+.||.++.+.
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~-rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT-RNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh-hchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 4679999999998774443 357899999987775444 5556666777888899888887778999998653
No 217
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.67 E-value=0.0015 Score=61.63 Aligned_cols=91 Identities=25% Similarity=0.327 Sum_probs=51.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecC---------CCC-CCCCCC
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT---------KRL-PYPSRS 279 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~---------~~l-p~~~~s 279 (514)
+..+|||+||++|.|+..+... .|+++|+.+.+.. ..+....+|. ... +-..+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-----------~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-----------QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------------TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-----------cceeeeecccchhhHHHhhhhhccccccC
Confidence 4578999999999999999853 4788888765211 1112222221 111 111268
Q ss_pred ceEEEeccccccccc----ch-------HHHHHHHHhhCCCCeEEEEEe
Q 010274 280 FELAHCSRCRIDWLQ----RD-------GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 280 FDlV~~s~~~l~~~~----d~-------~~lL~el~RvLrPGG~lvis~ 317 (514)
||+|+|-. ...... +. ...+.-+...|+|||.+++..
T Consensus 92 ~dlv~~D~-~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 92 FDLVLSDM-APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp ESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred cceecccc-ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 99999854 111111 11 224455567899999988755
No 218
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.66 E-value=0.0084 Score=66.34 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=19.1
Q ss_pred HHHHhhCCCCeEEEEEeCCCCCC
Q 010274 301 LELDRLLRPGGYFVYSSPEAYAH 323 (514)
Q Consensus 301 ~el~RvLrPGG~lvis~P~~~~~ 323 (514)
+.+.++|++||++.+..|..+..
T Consensus 180 ~~~~~lL~~~G~~~~I~P~s~l~ 202 (524)
T TIGR02987 180 EISLEIANKNGYVSIISPASWLG 202 (524)
T ss_pred HHHHHhcCCCCEEEEEEChHHhc
Confidence 45789999999999999976543
No 219
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.64 E-value=0.019 Score=56.40 Aligned_cols=131 Identities=14% Similarity=0.176 Sum_probs=84.8
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC-C--CCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-Y--PSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp-~--~~~sFDlV~~s~ 287 (514)
+.+||-+|+.+|....++++ ..|.++++++... ...++.|++|. ++.-+..|+..-. | --+..|+|++--
T Consensus 74 gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~~la~~R~-NIiPIl~DAr~P~~Y~~lv~~VDvI~~DV 151 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLLNLAKKRP-NIIPILEDARHPEKYRMLVEMVDVIFQDV 151 (229)
T ss_dssp T-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHST-TEEEEES-TTSGGGGTTTS--EEEEEEE-
T ss_pred CCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHHHHhccCC-ceeeeeccCCChHHhhcccccccEEEecC
Confidence 46899999999998888873 3578999998654 45557888773 5554555554221 1 124799999653
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEeCCC-CCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA-YAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~-~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
+ ...+.+.++.++..-||+||.++++.... ..........|.+-.+.+++.||+..+....
T Consensus 152 a---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~L 213 (229)
T PF01269_consen 152 A---QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITL 213 (229)
T ss_dssp S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-
T ss_pred C---ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEecc
Confidence 1 22334668889999999999999876421 0111222345777777888889998876543
No 220
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.02 Score=55.55 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=61.7
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC--------CCCCCceE
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp--------~~~~sFDl 282 (514)
..+|+|+|+-.|+++..+++ ..|+++|+.|.+.. ..+.++++|+..-+ +....+|+
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-----------~~V~~iq~d~~~~~~~~~l~~~l~~~~~Dv 114 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-----------PGVIFLQGDITDEDTLEKLLEALGGAPVDV 114 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-----------CCceEEeeeccCccHHHHHHHHcCCCCcce
Confidence 46899999999999998874 23889999887652 33677777765433 33445799
Q ss_pred EEecccc---cccccch-------HHHHHHHHhhCCCCeEEEEEe
Q 010274 283 AHCSRCR---IDWLQRD-------GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 283 V~~s~~~---l~~~~d~-------~~lL~el~RvLrPGG~lvis~ 317 (514)
|+|-... -++..|. ..++.-+..+|+|||.|++..
T Consensus 115 V~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 115 VLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred EEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 9963311 1111111 336666778999999999854
No 221
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.61 E-value=0.015 Score=60.42 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=61.0
Q ss_pred CeEEEECCCCchHHHHHhc--------CCCccccCChhhhhHHHHHHHHHcCCCeEE--EeecCCC----CCC--CCCCc
Q 010274 217 RNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGIPSTL--GVLGTKR----LPY--PSRSF 280 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--------~~V~gvdis~~dis~a~~~~A~~rg~~~~~--~~~d~~~----lp~--~~~sF 280 (514)
..++|+|||.|.=+..|++ ...+++||+...+..+..+........+.+ +.+|..+ ++- .....
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 4799999999976665542 123455555555544443333122223333 4555322 221 12346
Q ss_pred eEEEecccccccccch--HHHHHHHHh-hCCCCeEEEEEe
Q 010274 281 ELAHCSRCRIDWLQRD--GILLLELDR-LLRPGGYFVYSS 317 (514)
Q Consensus 281 DlV~~s~~~l~~~~d~--~~lL~el~R-vLrPGG~lvis~ 317 (514)
.+++.....+...+.. ..+|+++.+ .|+|||.|++..
T Consensus 158 r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 158 TTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 7887766566665544 458999999 999999999854
No 222
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.55 E-value=0.0043 Score=63.74 Aligned_cols=91 Identities=18% Similarity=0.285 Sum_probs=57.6
Q ss_pred CCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHc----CC--CeEEEeecCCCCCCCCCCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~r----g~--~~~~~~~d~~~lp~~~~sFDlV~~s 286 (514)
.+.|||||||+|.++...+. ++|.+++.+. |.+.|+.. .. ++.++.+.+++..+| ++.|+|++-
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~------MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISE 250 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE------MAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISE 250 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceEEEEehhH------HHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEec
Confidence 46899999999987776653 4677775543 23444332 22 345555667777777 688999964
Q ss_pred ccccccccchHHHH---HHHHhhCCCCeEEEE
Q 010274 287 RCRIDWLQRDGILL---LELDRLLRPGGYFVY 315 (514)
Q Consensus 287 ~~~l~~~~d~~~lL---~el~RvLrPGG~lvi 315 (514)
- +.++.-.+.+| .-..+.|+|.|..+=
T Consensus 251 P--MG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 251 P--MGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred c--chhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 2 33332223332 235599999999873
No 223
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.43 E-value=0.0035 Score=64.08 Aligned_cols=104 Identities=16% Similarity=0.139 Sum_probs=66.9
Q ss_pred CeEEEECCCCchHHHHHh--c-CCCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCC-CC--CCCCCceEEEeccc
Q 010274 217 RNVLDVGCGVASFGAYLL--S-HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKR-LP--YPSRSFELAHCSRC 288 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La--~-~~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~-lp--~~~~sFDlV~~s~~ 288 (514)
++|||+=|=||.|+.+.+ + ..|+.+|.+...+..+..+.+...- ....+...|+.. +. -..++||+|++---
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPP 204 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPP 204 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--S
T ss_pred CceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECCC
Confidence 689999999999999865 2 3588999888888777755554431 246777777543 21 12368999998321
Q ss_pred c-----cccccchHHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 289 R-----IDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 289 ~-----l~~~~d~~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
. ..-..+...++..+.++|+|||.|++++...
T Consensus 205 sF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 205 SFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp SEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 1 1112344668999999999999999877543
No 224
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.24 E-value=0.017 Score=55.52 Aligned_cols=97 Identities=15% Similarity=0.145 Sum_probs=60.5
Q ss_pred CCCeEEEECCCCchHHHHHh--c-CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 215 NIRNVLDVGCGVASFGAYLL--S-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La--~-~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..++|||+|+|+|..+..-+ + ..|+..|+.|.- ..+..-.+..++..+.+...|... .+..||+++.+..+..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~-~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWL-EQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHH-HHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 45789999999997665544 3 367788887643 333334455567777666655433 4578999998874333
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+. .-..++. +.+.|+..|.-++..
T Consensus 155 ~~-~a~~l~~-~~~~l~~~g~~vlvg 178 (218)
T COG3897 155 HT-EADRLIP-WKDRLAEAGAAVLVG 178 (218)
T ss_pred ch-HHHHHHH-HHHHHHhCCCEEEEe
Confidence 32 2234555 666666666555444
No 225
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.016 Score=58.32 Aligned_cols=69 Identities=19% Similarity=0.144 Sum_probs=49.7
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCC-CceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSR-SFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~-sFDlV~~s 286 (514)
..+|||||+|.|.++..|++ ..|+++++++..+..-....+ ...+..++.+|+...++++. .++.|+++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchhhcCCCEEEEc
Confidence 46899999999999999995 468888887654422221111 23567888999988888753 67888855
No 226
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.15 E-value=0.087 Score=53.14 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=83.5
Q ss_pred HHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHc-CCCeEEEeec
Q 010274 196 ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLG 269 (514)
Q Consensus 196 ~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d 269 (514)
+..|..++.... +.+||+-|.|+|+++.+++. .++...|+...-...+..++-... +.++.+..-|
T Consensus 94 ia~I~~~L~i~P--------GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrD 165 (314)
T KOG2915|consen 94 IAMILSMLEIRP--------GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRD 165 (314)
T ss_pred HHHHHHHhcCCC--------CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEee
Confidence 345667776532 35899999999999999884 356677664433333333332222 3356777777
Q ss_pred CCCCCCC--CCCceEEEecccccccccchHHHHHHHHhhCCCCe-EEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEE
Q 010274 270 TKRLPYP--SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (514)
Q Consensus 270 ~~~lp~~--~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG-~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v 346 (514)
....-|. +..+|.|+-- ++.|..++--++.+||.+| +|+-.+|- .+..+.-.+++.++||..+
T Consensus 166 Vc~~GF~~ks~~aDaVFLD------lPaPw~AiPha~~~lk~~g~r~csFSPC--------IEQvqrtce~l~~~gf~~i 231 (314)
T KOG2915|consen 166 VCGSGFLIKSLKADAVFLD------LPAPWEAIPHAAKILKDEGGRLCSFSPC--------IEQVQRTCEALRSLGFIEI 231 (314)
T ss_pred cccCCccccccccceEEEc------CCChhhhhhhhHHHhhhcCceEEeccHH--------HHHHHHHHHHHHhCCCceE
Confidence 7666554 5679998722 4556667777888999877 55543321 1223345577888999766
Q ss_pred EEec
Q 010274 347 SKKD 350 (514)
Q Consensus 347 ~~~~ 350 (514)
..-.
T Consensus 232 ~~vE 235 (314)
T KOG2915|consen 232 ETVE 235 (314)
T ss_pred EEEE
Confidence 5433
No 227
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.09 E-value=0.018 Score=56.08 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=50.7
Q ss_pred CCeEEEECCCCchHHHHHh---cCC-CccccCChhhhhHHH--HHHHHH----cCC---CeEEEeecCCCCCCCC---CC
Q 010274 216 IRNVLDVGCGVASFGAYLL---SHD-IIAMSLAPNDVHENQ--IQFALE----RGI---PSTLGVLGTKRLPYPS---RS 279 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La---~~~-V~gvdis~~dis~a~--~~~A~~----rg~---~~~~~~~d~~~lp~~~---~s 279 (514)
....+|||||.|......+ +.. ..|+++.+.-...+. .+..++ .|. ++.+..+|..+.++.. ..
T Consensus 43 ~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~ 122 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWSD 122 (205)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGHC
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhcC
Confidence 3589999999997765554 333 789998875333222 121111 122 3455555544332110 23
Q ss_pred ceEEEecccccccccchHHHHHHHHhhCCCCeEEEE
Q 010274 280 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 315 (514)
Q Consensus 280 FDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvi 315 (514)
-|+|++++. -+.++....|.+....||+|-+++-
T Consensus 123 AdvVf~Nn~--~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 123 ADVVFVNNT--CFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp -SEEEE--T--TT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred CCEEEEecc--ccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 599998873 2445556677888889999877663
No 228
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.03 E-value=0.028 Score=54.86 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcCCC---ccccCChhhhhHHHHHHHHHcCC----CeEE
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDI---IAMSLAPNDVHENQIQFALERGI----PSTL 265 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~V---~gvdis~~dis~a~~~~A~~rg~----~~~~ 265 (514)
..+.+.+++.+. .++++||.||-|-|.....+.++.. +.++.. +...+..+..|. ++.+
T Consensus 88 tpiMha~A~ai~---------tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~h-----p~V~krmr~~gw~ek~nVii 153 (271)
T KOG1709|consen 88 TPIMHALAEAIS---------TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAH-----PDVLKRMRDWGWREKENVII 153 (271)
T ss_pred hHHHHHHHHHHh---------hCCceEEEeccchHHHHHHHhhcCCcceEEEecC-----HHHHHHHHhcccccccceEE
Confidence 345555555554 3446899999999988887775432 234333 333444444432 3444
Q ss_pred EeecCCC-C-CCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEE
Q 010274 266 GVLGTKR-L-PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 266 ~~~d~~~-l-p~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis 316 (514)
..+-=++ + .++++.||-|+--. .-++-++...+.+.+.|+|||+|.|-+.
T Consensus 154 l~g~WeDvl~~L~d~~FDGI~yDT-y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 154 LEGRWEDVLNTLPDKHFDGIYYDT-YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred EecchHhhhccccccCcceeEeec-hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 3332111 1 25678899998543 3366677788999999999999999874
No 229
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.91 E-value=0.0089 Score=57.17 Aligned_cols=131 Identities=18% Similarity=0.168 Sum_probs=75.1
Q ss_pred ceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHH
Q 010274 177 EKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQI 253 (514)
Q Consensus 177 ~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~ 253 (514)
-.+..|.+ ....+..++..+.+.+++... . -...++||+-||+|.++...+. ..|+.+|.+......-.
T Consensus 11 r~l~~p~~-~~~RPT~drvrealFniL~~~-~-----~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~- 82 (183)
T PF03602_consen 11 RKLKTPKG-DNTRPTTDRVREALFNILQPR-N-----LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIK- 82 (183)
T ss_dssp -EEE-TT---TS-SSSHHHHHHHHHHHHCH-------HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHH-
T ss_pred CEecCCCC-CCcCCCcHHHHHHHHHHhccc-c-----cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHH-
Confidence 34444433 334455566777777777642 0 1236899999999999998774 36778888776554333
Q ss_pred HHHHHcCC--CeEEEeecCC-CCC---CCCCCceEEEecccccccccc--hHHHHHHHH--hhCCCCeEEEEEeC
Q 010274 254 QFALERGI--PSTLGVLGTK-RLP---YPSRSFELAHCSRCRIDWLQR--DGILLLELD--RLLRPGGYFVYSSP 318 (514)
Q Consensus 254 ~~A~~rg~--~~~~~~~d~~-~lp---~~~~sFDlV~~s~~~l~~~~d--~~~lL~el~--RvLrPGG~lvis~P 318 (514)
+.++.-+. ...+...|.. .+. .....||+|+.-- +|... ...++..+. .+|+++|.+++...
T Consensus 83 ~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 83 KNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 33333333 2556666632 221 2457899999643 33333 255777776 79999999999664
No 230
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=95.83 E-value=0.039 Score=58.20 Aligned_cols=125 Identities=19% Similarity=0.210 Sum_probs=74.5
Q ss_pred CCeEEEECCCCchHHHHHhcC-----C-CccccCChhhhhHHHHHHHHHcCCC-eEEEeecCCCCC---CCCCCceEEEe
Q 010274 216 IRNVLDVGCGVASFGAYLLSH-----D-IIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLP---YPSRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-----~-V~gvdis~~dis~a~~~~A~~rg~~-~~~~~~d~~~lp---~~~~sFDlV~~ 285 (514)
+.+|||+.++.|.=+.++++. . |+++|+++.=+. .+.+..+..|.. +.....|...++ ...+.||.|+.
T Consensus 157 ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~-~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLl 235 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLK-RLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILL 235 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHH-HHHHHHHHcCCCceEEEecccccccccccccCcCcEEEE
Confidence 468999999999877777632 2 477777664432 222344444654 456666665543 22235999995
Q ss_pred ----c-ccccccccc----------------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc-Cc
Q 010274 286 ----S-RCRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CW 343 (514)
Q Consensus 286 ----s-~~~l~~~~d----------------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~-Gf 343 (514)
| ..++.-.++ ...+|..+.++|||||.|++++-.... +|+ -..+...+++. +|
T Consensus 236 DaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~--eEN---E~vV~~~L~~~~~~ 310 (355)
T COG0144 236 DAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP--EEN---EEVVERFLERHPDF 310 (355)
T ss_pred CCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch--hcC---HHHHHHHHHhCCCc
Confidence 2 112211111 134899999999999999999865432 121 12445566554 55
Q ss_pred EEE
Q 010274 344 KIV 346 (514)
Q Consensus 344 ~~v 346 (514)
+.+
T Consensus 311 ~~~ 313 (355)
T COG0144 311 ELE 313 (355)
T ss_pred eee
Confidence 444
No 231
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=95.78 E-value=0.032 Score=56.23 Aligned_cols=69 Identities=19% Similarity=0.186 Sum_probs=49.4
Q ss_pred CCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCCCCCCCCCceEEEec
Q 010274 216 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~lp~~~~sFDlV~~s 286 (514)
...|||||-|||.++..|.+ +.|+++++++.++.+-.....-.-. ....+..+|....++| .||.++++
T Consensus 59 tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsN 130 (315)
T KOG0820|consen 59 TDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSN 130 (315)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeecc
Confidence 46899999999999999985 5899999988877554432221110 1356777777776665 69999964
No 232
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.69 E-value=0.13 Score=51.06 Aligned_cols=126 Identities=17% Similarity=0.239 Sum_probs=81.2
Q ss_pred CCCCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEE-eecCCCCC---CCCCCceEEEec
Q 010274 214 GNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLG-VLGTKRLP---YPSRSFELAHCS 286 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~~~~~~-~~d~~~lp---~~~~sFDlV~~s 286 (514)
.+.+.+||||+-||.|+..+++. .|.++|+.-..++... +...++... ..++..+. +. +..|+|+|-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kL-----R~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~D 151 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKL-----RNDPRVIVLERTNVRYLTPEDFT-EKPDLIVID 151 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhH-----hcCCcEEEEecCChhhCCHHHcc-cCCCeEEEE
Confidence 34578999999999999999853 6888887665554443 223333322 22233332 22 367899876
Q ss_pred ccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCC------------CChhH-HHhHHHHHHHHHhcCcEEEEEe
Q 010274 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA------------HDPEN-RRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 287 ~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~------------~~~e~-~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
-+.+ ....+|-.+..+|+|+|.++.-.-+.+. +++.. .....++.+.++..||.+....
T Consensus 152 vSFI----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 152 VSFI----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred eehh----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeE
Confidence 5423 2456899999999999998875543322 22222 2244688899999999877543
No 233
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.49 E-value=0.17 Score=48.60 Aligned_cols=134 Identities=21% Similarity=0.189 Sum_probs=79.7
Q ss_pred CceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHH
Q 010274 176 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQ 252 (514)
Q Consensus 176 g~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~ 252 (514)
|-.+.+|.+ ....+..++..+.+.+++... .-.+.++||+=+|+|.++...+.+ .++.+|.+........
T Consensus 11 gr~L~~p~~-~~~RPT~drVREalFNil~~~------~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~ 83 (187)
T COG0742 11 GRKLKTPDG-PGTRPTTDRVREALFNILAPD------EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILK 83 (187)
T ss_pred CCcccCCCC-CCcCCCchHHHHHHHHhcccc------ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHH
Confidence 344555543 344566677777777777631 123468999999999999998753 5677777765544333
Q ss_pred HHHHHHcC--CCeEEEeecCCCC-CCCCC--CceEEEecccccc-cccchHHHHH--HHHhhCCCCeEEEEEeC
Q 010274 253 IQFALERG--IPSTLGVLGTKRL-PYPSR--SFELAHCSRCRID-WLQRDGILLL--ELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 253 ~~~A~~rg--~~~~~~~~d~~~l-p~~~~--sFDlV~~s~~~l~-~~~d~~~lL~--el~RvLrPGG~lvis~P 318 (514)
+..+.-+ .+..+...|+... +.... .||+|+.--- .+ -+.+....+. +-..+|+|+|.+++...
T Consensus 84 -~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP-y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 84 -ENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP-YAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred -HHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC-CccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 2233334 4566666775532 21222 4999995431 11 1111122233 35578999999999654
No 234
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.49 E-value=0.025 Score=59.50 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=38.1
Q ss_pred eEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC
Q 010274 218 NVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR 272 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~ 272 (514)
+|||+-||+|.|+..|+. ..|+|+++.+..+..+..+.....-.++.+..+++++
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 799999999999999996 4799999999888777744444333467787665443
No 235
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.48 E-value=0.04 Score=63.22 Aligned_cols=101 Identities=15% Similarity=0.050 Sum_probs=61.4
Q ss_pred CeEEEECCCCchHHHHHhc----------------------------------------------CCCccccCChhhhhH
Q 010274 217 RNVLDVGCGVASFGAYLLS----------------------------------------------HDIIAMSLAPNDVHE 250 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----------------------------------------------~~V~gvdis~~dis~ 250 (514)
..++|.+||+|++.+..+. ..++|+|+++..+..
T Consensus 192 ~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~ 271 (702)
T PRK11783 192 TPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQA 271 (702)
T ss_pred CeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHH
Confidence 5799999999998866541 135677777766655
Q ss_pred HHHHHHHHcCC--CeEEEeecCCCCCCC--CCCceEEEeccccccccc---chHHHHHH---HHhhCCCCeEEEEEeC
Q 010274 251 NQIQFALERGI--PSTLGVLGTKRLPYP--SRSFELAHCSRCRIDWLQ---RDGILLLE---LDRLLRPGGYFVYSSP 318 (514)
Q Consensus 251 a~~~~A~~rg~--~~~~~~~d~~~lp~~--~~sFDlV~~s~~~l~~~~---d~~~lL~e---l~RvLrPGG~lvis~P 318 (514)
+..+. ...|. .+.+.++|..+++.+ .++||+|+++--...-+. +...+..+ ..+...+|+.+++.++
T Consensus 272 A~~N~-~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 272 ARKNA-RRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHH-HHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 55333 33354 367888888777644 357999998742111121 11233333 3344448988877554
No 236
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.48 E-value=0.5 Score=45.90 Aligned_cols=153 Identities=16% Similarity=0.191 Sum_probs=95.0
Q ss_pred CCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCC
Q 010274 187 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIP 262 (514)
Q Consensus 187 ~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~ 262 (514)
.|.+...+....|..-+.. + +-....+||=+|+.+|+...++++ ..+.++++++.... ..+..|.+|. +
T Consensus 53 ~Wnp~RSKLaAaIl~Gl~~----~-pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~r-eLl~~a~~R~-N 125 (231)
T COG1889 53 EWNPRRSKLAAAILKGLKN----F-PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMR-ELLDVAEKRP-N 125 (231)
T ss_pred eeCcchhHHHHHHHcCccc----C-CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHH-HHHHHHHhCC-C
Confidence 3444445554444433331 1 123446899999999988888773 35789999997664 4457777763 3
Q ss_pred eEEEeecCCCCC--C--CCCCceEEEecccccccccch-HHHHHHHHhhCCCCeEEEEEeCC-CCCCChhHHHhHHHHHH
Q 010274 263 STLGVLGTKRLP--Y--PSRSFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYSSPE-AYAHDPENRRIWNAMYD 336 (514)
Q Consensus 263 ~~~~~~d~~~lp--~--~~~sFDlV~~s~~~l~~~~d~-~~lL~el~RvLrPGG~lvis~P~-~~~~~~e~~~~~~~l~~ 336 (514)
+.-+..|+. .| | --+..|+|++--+ .++. +.+..++..-||+||+++++.-. ......+....|++-.+
T Consensus 126 i~PIL~DA~-~P~~Y~~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~ 200 (231)
T COG1889 126 IIPILEDAR-KPEKYRHLVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVE 200 (231)
T ss_pred ceeeecccC-CcHHhhhhcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHH
Confidence 333444442 22 1 1246899985431 2333 55888999999999988876532 11122333456776677
Q ss_pred HHHhcCcEEEEEecc
Q 010274 337 LLKSMCWKIVSKKDQ 351 (514)
Q Consensus 337 ll~~~Gf~~v~~~~~ 351 (514)
-+++.+|++.+..+.
T Consensus 201 kL~~~~f~i~e~~~L 215 (231)
T COG1889 201 KLEEGGFEILEVVDL 215 (231)
T ss_pred HHHhcCceeeEEecc
Confidence 788889998877655
No 237
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=95.40 E-value=0.12 Score=50.26 Aligned_cols=119 Identities=13% Similarity=0.104 Sum_probs=73.5
Q ss_pred EEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHHc-CCCeEEEeecC-CCCCCCCCCceEEEeccccccc
Q 010274 219 VLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGT-KRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 219 VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d~-~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
|.||||-.|.+..+|.+. .++++|+++.-+..+..+.++.. ...+.+..+|. ..++ +.+..|.|+.+. +.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAG--MG- 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAG--MG- 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEE--E--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEec--CC-
Confidence 689999999999999853 57889999887777765554432 22466777774 3343 223368877554 11
Q ss_pred ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 293 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 293 ~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
-.-...+|.+....++..-.|++.-.. ....+++.+.+.||.++...-.
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lILqP~~----------~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLILQPNT----------HAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEEEESS-----------HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHhhHHHhccCCeEEEeCCC----------ChHHHHHHHHHCCCEEEEeEEE
Confidence 112345777777777776677774322 1468899999999998876543
No 238
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.16 E-value=0.12 Score=46.87 Aligned_cols=97 Identities=15% Similarity=0.090 Sum_probs=55.0
Q ss_pred CCCCeEEEECCCCchHHHHHhc--------CCCccccCChhhhhHHHHHHHHHcCC----CeEEEeecCCCCCCCCCCce
Q 010274 214 GNIRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGTKRLPYPSRSFE 281 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~--------~~V~gvdis~~dis~a~~~~A~~rg~----~~~~~~~d~~~lp~~~~sFD 281 (514)
....+|+|+|||.|.++..|+. ..|+++|..+.....+. +.+++.+. ...+...+..... .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQ-KRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHH-HHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 3456899999999999998886 36778887775543333 33333331 2233333322221 135567
Q ss_pred EEEecccccccccchH-HHHHHHHhhCCCCeEEEEEeCC
Q 010274 282 LAHCSRCRIDWLQRDG-ILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 282 lV~~s~~~l~~~~d~~-~lL~el~RvLrPGG~lvis~P~ 319 (514)
+++ .+|--.+.. .+|+-..+ ++-.+++..|=
T Consensus 102 ~~v----gLHaCG~Ls~~~l~~~~~---~~~~~l~~vpC 133 (141)
T PF13679_consen 102 ILV----GLHACGDLSDRALRLFIR---PNARFLVLVPC 133 (141)
T ss_pred EEE----EeecccchHHHHHHHHHH---cCCCEEEEcCC
Confidence 777 344455543 34444444 66666655553
No 239
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.09 E-value=0.14 Score=51.74 Aligned_cols=102 Identities=15% Similarity=0.186 Sum_probs=53.7
Q ss_pred CCCeEEEECCCCc--hHHHHHh-----cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC-----------C-
Q 010274 215 NIRNVLDVGCGVA--SFGAYLL-----SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----------Y- 275 (514)
Q Consensus 215 ~~~~VLDIGCGtG--~~a~~La-----~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp-----------~- 275 (514)
.++..||||||-- .....++ ++.|.-+|.+|.-+..+..-.+........++.+|+.+.. +
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 5788999999954 3344443 4578889998876644432222221112667777765421 0
Q ss_pred CCCCceEEEecccccccccc---hHHHHHHHHhhCCCCeEEEEEeC
Q 010274 276 PSRSFELAHCSRCRIDWLQR---DGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 276 ~~~sFDlV~~s~~~l~~~~d---~~~lL~el~RvLrPGG~lvis~P 318 (514)
.++..=+++ ..++||++| +..++..+...|.||.+|+|+..
T Consensus 148 ~~rPVavll--~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 148 FDRPVAVLL--VAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp TTS--EEEE--CT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCCeeeee--eeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 123333333 347888865 47799999999999999999874
No 240
>PRK13699 putative methylase; Provisional
Probab=95.07 E-value=0.068 Score=52.86 Aligned_cols=82 Identities=11% Similarity=0.057 Sum_probs=50.4
Q ss_pred EEeecCCCC--CCCCCCceEEEecccc----ccc----------ccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHH
Q 010274 265 LGVLGTKRL--PYPSRSFELAHCSRCR----IDW----------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR 328 (514)
Q Consensus 265 ~~~~d~~~l--p~~~~sFDlV~~s~~~----l~~----------~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~ 328 (514)
+..+|..++ .++++++|+|++.--- -.. ..-....+.|+.|+|||||.+++.....
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~-------- 75 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN-------- 75 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc--------
Confidence 344554333 4667888888875210 000 0112468899999999999988633111
Q ss_pred HhHHHHHHHHHhcCcEEEEEecceEEEeccC
Q 010274 329 RIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 359 (514)
Q Consensus 329 ~~~~~l~~ll~~~Gf~~v~~~~~~~iw~Kp~ 359 (514)
....+..++++.||.+. ...+|.|+.
T Consensus 76 -~~~~~~~al~~~GF~l~----~~IiW~K~~ 101 (227)
T PRK13699 76 -RVDRFMAAWKNAGFSVV----GHLVFTKNY 101 (227)
T ss_pred -cHHHHHHHHHHCCCEEe----eEEEEECCC
Confidence 12345667889999865 355899875
No 241
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.98 E-value=0.16 Score=54.03 Aligned_cols=19 Identities=32% Similarity=0.864 Sum_probs=16.6
Q ss_pred CCCCCceEEEeccccccccc
Q 010274 275 YPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 275 ~~~~sFDlV~~s~~~l~~~~ 294 (514)
||+++.++++++. .+||..
T Consensus 158 fP~~Slh~~~Ss~-slHWLS 176 (386)
T PLN02668 158 FPARSIDVFHSAF-SLHWLS 176 (386)
T ss_pred cCCCceEEEEeec-cceecc
Confidence 7889999999988 589975
No 242
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.62 E-value=0.3 Score=47.13 Aligned_cols=134 Identities=13% Similarity=0.057 Sum_probs=71.9
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhhh-------hHHHHHHHHHcC-CCeEEEeecCCCCC-------CCC
Q 010274 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDV-------HENQIQFALERG-IPSTLGVLGTKRLP-------YPS 277 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~di-------s~a~~~~A~~rg-~~~~~~~~d~~~lp-------~~~ 277 (514)
..+|+|+=-|.|.|+..++.. .-....+.+.+. .+.+...+++.. .+....-.+...++ .+.
T Consensus 49 g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~~~~ 128 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDLVPT 128 (238)
T ss_pred CCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccccccc
Confidence 468999999999999998842 112233344333 112222222221 11111111112222 122
Q ss_pred CCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCC----CChhHHH--hHHHHHHHHHhcCcEEEEEecc
Q 010274 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA----HDPENRR--IWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~----~~~e~~~--~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
.++|+++... .+| ......+..++++.|||||.+++.+..... .+..... .-..+....+.+||++..+...
T Consensus 129 ~~~yhdmh~k-~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 129 AQNYHDMHNK-NIH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAESEI 206 (238)
T ss_pred chhhhhhhcc-ccC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeeehh
Confidence 3444444333 222 344477999999999999999987643321 1111111 1136778899999998866554
No 243
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=94.58 E-value=0.16 Score=53.21 Aligned_cols=129 Identities=17% Similarity=0.109 Sum_probs=78.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhhhhHHHHHHHHH---cC----CCeEEEeecCCCC-CCCCCCceE
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE---RG----IPSTLGVLGTKRL-PYPSRSFEL 282 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~---rg----~~~~~~~~d~~~l-p~~~~sFDl 282 (514)
..++||=+|.|.|.-++.|.+. +|+-+|++|.+++-+.-+.... .+ .++.++..|+.+. .-..+.||.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 3478999999999999999853 4666777666654333111111 11 2345555454332 233468999
Q ss_pred EEecccccccccch-----HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEE
Q 010274 283 AHCSRCRIDWLQRD-----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 283 V~~s~~~l~~~~d~-----~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~ 348 (514)
|+.-. .-+-.+.. .++..-+.|.|+++|.+++..-+.|.... .|-.+.+.++++||.+.-.
T Consensus 369 vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~----vfw~i~aTik~AG~~~~Py 434 (508)
T COG4262 369 VIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPR----VFWRIDATIKSAGYRVWPY 434 (508)
T ss_pred EEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCc----eeeeehhHHHhCcceeeee
Confidence 98542 11111111 34777888999999999986655443221 1335678899999876543
No 244
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.35 E-value=0.069 Score=51.70 Aligned_cols=99 Identities=21% Similarity=0.270 Sum_probs=51.7
Q ss_pred eEEEECCCCchHHHHHhc----CCCccccCChh--hhhHHHHHHHHHcCC-----CeEEEeec-CCCCC--CCCCC-ceE
Q 010274 218 NVLDVGCGVASFGAYLLS----HDIIAMSLAPN--DVHENQIQFALERGI-----PSTLGVLG-TKRLP--YPSRS-FEL 282 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~----~~V~gvdis~~--dis~a~~~~A~~rg~-----~~~~~~~d-~~~lp--~~~~s-FDl 282 (514)
.+.|||||.|.+...|+. .-++|++|--. |.-++.++..+.... ++.+...+ ..-+| |..+. +-+
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskm 142 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKM 142 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccc
Confidence 499999999999999984 45777776322 333444444443211 12222111 11122 11111 111
Q ss_pred EEecccccccccc-------hHHHHHHHHhhCCCCeEEEEEe
Q 010274 283 AHCSRCRIDWLQR-------DGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 283 V~~s~~~l~~~~d-------~~~lL~el~RvLrPGG~lvis~ 317 (514)
.++.. --|+-.. ...++.+..-+|++||.++..+
T Consensus 143 ff~fp-dpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 143 FFLFP-DPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred eeecC-ChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22211 0111110 1348899999999999999754
No 245
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.28 E-value=0.11 Score=54.49 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=38.8
Q ss_pred CCCCeEEEECCCCchHHHHHhcC--------------------CCccccCChhhhhHHHHHHHHH-----cCCCeEE-Ee
Q 010274 214 GNIRNVLDVGCGVASFGAYLLSH--------------------DIIAMSLAPNDVHENQIQFALE-----RGIPSTL-GV 267 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~--------------------~V~gvdis~~dis~a~~~~A~~-----rg~~~~~-~~ 267 (514)
.+.-+|+|+||.+|..+..+... .|.--|+-.+|.+.-....... ...++.. .+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 44568999999999877666521 2333455555554333222111 1222222 12
Q ss_pred -ecCCCCCCCCCCceEEEeccccccccc
Q 010274 268 -LGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (514)
Q Consensus 268 -~d~~~lp~~~~sFDlV~~s~~~l~~~~ 294 (514)
+....--||+++.|+++++. .+||+.
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~-alHWLS 121 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSY-ALHWLS 121 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES--TTB-S
T ss_pred CchhhhccCCCCceEEEEEec-hhhhcc
Confidence 22333337889999999888 588864
No 246
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.27 E-value=0.22 Score=52.70 Aligned_cols=102 Identities=17% Similarity=0.217 Sum_probs=70.7
Q ss_pred CeEEEECCCCchHHHHHh--cCC-----------------------------------------CccccCChhhhhHHHH
Q 010274 217 RNVLDVGCGVASFGAYLL--SHD-----------------------------------------IIAMSLAPNDVHENQI 253 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La--~~~-----------------------------------------V~gvdis~~dis~a~~ 253 (514)
..++|-=||+|++.+..+ ..+ +.|+|+++..+..|.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak- 271 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK- 271 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH-
Confidence 479999999999987765 221 458888888776665
Q ss_pred HHHHHcCCC--eEEEeecCCCCCCCCCCceEEEecccccccccch-------HHHHHHHHhhCCCCeEEEEEeCC
Q 010274 254 QFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD-------GILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 254 ~~A~~rg~~--~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~-------~~lL~el~RvLrPGG~lvis~P~ 319 (514)
..|++.|+. +.|.++|+..++-+-+.+|+|+|+----.-+.+. ..+.+.+.+.++--+.++|+++.
T Consensus 272 ~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e 346 (381)
T COG0116 272 ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSE 346 (381)
T ss_pred HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEccH
Confidence 556666764 7899999888864447899999863111111111 23556777888888889988754
No 247
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=94.18 E-value=0.073 Score=50.02 Aligned_cols=68 Identities=22% Similarity=0.256 Sum_probs=43.6
Q ss_pred eEEEECCCCchHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCCCC--CCCCC-ceEEEec
Q 010274 218 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP--YPSRS-FELAHCS 286 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~--~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~lp--~~~~s-FDlV~~s 286 (514)
.|+|+.||.|..+..++.. .|+++|+++.-+.-++ ..|+--|+ ++.++.+|..++. +.... ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~-hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK-HNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH-HHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999964 5899998887665554 44555564 5788888854432 11122 8999975
No 248
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=94.17 E-value=0.075 Score=54.66 Aligned_cols=74 Identities=12% Similarity=-0.033 Sum_probs=49.1
Q ss_pred CeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC--CCC--CCceEEEecc
Q 010274 217 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPS--RSFELAHCSR 287 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp--~~~--~sFDlV~~s~ 287 (514)
..+||.+||.|..+..++. ..|+|+|.++.++..+..... + ..++.+...+...+. .++ .+||.|++..
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~-~-~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK-P-FGRFTLVHGNFSNLKEVLAEGLGKVDGILLDL 98 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc-c-CCcEEEEeCCHHHHHHHHHcCCCccCEEEECC
Confidence 4899999999999999884 357888877766655442222 1 335777777765542 121 2799999865
Q ss_pred ccccc
Q 010274 288 CRIDW 292 (514)
Q Consensus 288 ~~l~~ 292 (514)
.+..+
T Consensus 99 GvSs~ 103 (296)
T PRK00050 99 GVSSP 103 (296)
T ss_pred Ccccc
Confidence 44444
No 249
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.03 E-value=0.31 Score=49.61 Aligned_cols=102 Identities=11% Similarity=0.132 Sum_probs=56.4
Q ss_pred CCCeEEEECCCCchHHHHH-hc-----CCCccccCChhhhhHHHHHHHH---HcCCCeEEEeecCCCCCCCCCCceEEEe
Q 010274 215 NIRNVLDVGCGVASFGAYL-LS-----HDIIAMSLAPNDVHENQIQFAL---ERGIPSTLGVLGTKRLPYPSRSFELAHC 285 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L-a~-----~~V~gvdis~~dis~a~~~~A~---~rg~~~~~~~~d~~~lp~~~~sFDlV~~ 285 (514)
.+++|+=||||.=-++..+ +. ..|+++|+++.....+. +... ..+....+..+|....+..-..||+|+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~-~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELAR-RLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHH-HHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 4569999999977555444 32 23668888877665554 2222 2245678888887766655468999986
Q ss_pred cccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 286 s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+..+-.-..+...+|..+.+.++||..+++..
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 65221112366889999999999999999864
No 250
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=93.95 E-value=0.052 Score=55.46 Aligned_cols=125 Identities=22% Similarity=0.270 Sum_probs=73.3
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCC-eEEEeecCCCC-C-CCCCCceEEEe--
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRL-P-YPSRSFELAHC-- 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~-~~~~~~d~~~l-p-~~~~sFDlV~~-- 285 (514)
..+|||+.+|.|.=+..+++ ..+++.|++..-+..-. ..++..|.. +.....|.... + .....||.|+.
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~-~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDa 164 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK-ENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDA 164 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-HHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEEC
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH-HHHHhcCCceEEEEeeccccccccccccccchhhcCC
Confidence 35799999999987777763 35777777765443332 333444554 44444554444 1 22346999996
Q ss_pred --cc-cccccccc----------------hHHHHHHHHhhC----CCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc-
Q 010274 286 --SR-CRIDWLQR----------------DGILLLELDRLL----RPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM- 341 (514)
Q Consensus 286 --s~-~~l~~~~d----------------~~~lL~el~RvL----rPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~- 341 (514)
|. .++...++ ...+|..+.+.+ ||||++++++-.... +| .-..++..+++.
T Consensus 165 PCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~--eE---NE~vV~~fl~~~~ 239 (283)
T PF01189_consen 165 PCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP--EE---NEEVVEKFLKRHP 239 (283)
T ss_dssp SCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG--GG---THHHHHHHHHHST
T ss_pred CccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH--HH---HHHHHHHHHHhCC
Confidence 21 11111111 134899999999 999999998854321 11 123455666665
Q ss_pred CcEEE
Q 010274 342 CWKIV 346 (514)
Q Consensus 342 Gf~~v 346 (514)
.|+.+
T Consensus 240 ~~~l~ 244 (283)
T PF01189_consen 240 DFELV 244 (283)
T ss_dssp SEEEE
T ss_pred CcEEE
Confidence 45444
No 251
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=93.78 E-value=0.13 Score=51.74 Aligned_cols=100 Identities=16% Similarity=0.131 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHH---cCCCeEEEe
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALE---RGIPSTLGV 267 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~---rg~~~~~~~ 267 (514)
....+.+.+.+... +...|||||+|+|.++..|++ ..++++++++.. .+..++ ...++.++.
T Consensus 16 ~~~~~~Iv~~~~~~--------~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~-----~~~L~~~~~~~~~~~vi~ 82 (262)
T PF00398_consen 16 PNIADKIVDALDLS--------EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDL-----AKHLKERFASNPNVEVIN 82 (262)
T ss_dssp HHHHHHHHHHHTCG--------TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHH-----HHHHHHHCTTCSSEEEEE
T ss_pred HHHHHHHHHhcCCC--------CCCEEEEeCCCCccchhhHhcccCcceeecCcHhH-----HHHHHHHhhhcccceeee
Confidence 45666777777542 346899999999999999985 467888777643 344344 245788888
Q ss_pred ecCCCCCCCC---CCceEEEecccccccccchHHHHHHHHhhCCC
Q 010274 268 LGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRP 309 (514)
Q Consensus 268 ~d~~~lp~~~---~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrP 309 (514)
.|...+.... +.-..|+++ +.+ .-...++..+...-+.
T Consensus 83 ~D~l~~~~~~~~~~~~~~vv~N---lPy-~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 83 GDFLKWDLYDLLKNQPLLVVGN---LPY-NISSPILRKLLELYRF 123 (262)
T ss_dssp S-TTTSCGGGHCSSSEEEEEEE---ETG-TGHHHHHHHHHHHGGG
T ss_pred cchhccccHHhhcCCceEEEEE---ecc-cchHHHHHHHhhcccc
Confidence 8888777553 344556643 333 1123466666654343
No 252
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=93.68 E-value=0.088 Score=50.41 Aligned_cols=91 Identities=13% Similarity=0.212 Sum_probs=62.3
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHc-----CCCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~r-----g~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
..+.|+|+|+|.++...+. ..|++++.+|.-. ..|.+. ..+..++++|+....| ..-|+|+|-..-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a-----~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRA-----RLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHH-----HHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhh
Confidence 3699999999988776653 3688887766432 344443 2357888888888887 367999985410
Q ss_pred ccc-ccchHHHHHHHHhhCCCCeEEE
Q 010274 290 IDW-LQRDGILLLELDRLLRPGGYFV 314 (514)
Q Consensus 290 l~~-~~d~~~lL~el~RvLrPGG~lv 314 (514)
-.. .+.....+..+..-||-.+.++
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCccc
Confidence 111 1233457888888999999887
No 253
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=93.59 E-value=0.085 Score=57.38 Aligned_cols=55 Identities=25% Similarity=0.430 Sum_probs=43.5
Q ss_pred CeEEEECCCCchHHHHHhc--CCCccccCChhhhhHHHHHHHHHcC-CCeEEEeecCCC
Q 010274 217 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKR 272 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--~~V~gvdis~~dis~a~~~~A~~rg-~~~~~~~~d~~~ 272 (514)
..+||+-||||.++..++. ..|+|+++++.++..|.. .|...| .++.|+++-+++
T Consensus 385 k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~-nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEK-NAQINGISNATFIVGQAED 442 (534)
T ss_pred cEEEEEeecCCceehhhhccccceeeeecChhhcchhhh-cchhcCccceeeeecchhh
Confidence 6799999999999999996 479999999999888774 444445 467888874443
No 254
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=93.56 E-value=0.019 Score=49.12 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=38.2
Q ss_pred EEECCCCchHHHHHhcC-------CCccccCChhhhhHHHHHHHHHcC--CCeEEEeecCCCC--CCCCCCceEEEeccc
Q 010274 220 LDVGCGVASFGAYLLSH-------DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL--PYPSRSFELAHCSRC 288 (514)
Q Consensus 220 LDIGCGtG~~a~~La~~-------~V~gvdis~~dis~a~~~~A~~rg--~~~~~~~~d~~~l--p~~~~sFDlV~~s~~ 288 (514)
||||+..|..+..++.. .++++|..+. .+...+..++.+ ..+.+..++..+. .++.++||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999888777631 4677877663 112223333222 2467777765332 12357899999543
Q ss_pred ccccccchHHHHHHHHhhCCCCeEEEEE
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~lvis 316 (514)
-|-.+.....+..+.+.|+|||.+++-
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 232344456889999999999999874
No 255
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=93.40 E-value=1.8 Score=43.18 Aligned_cols=129 Identities=16% Similarity=0.137 Sum_probs=71.0
Q ss_pred CCeEEEECCCCc-hHHHHHh--cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC-CCCC-CCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVA-SFGAYLL--SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYP-SRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG-~~a~~La--~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~-lp~~-~~sFDlV~~s~~~l 290 (514)
+++||=||=.-- +++..|. ..+|+.+|++..-+.-- .+.|++.|.++.....|... +|-. .++||++++--
T Consensus 45 gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI-~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP--- 120 (243)
T PF01861_consen 45 GKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFI-NRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP--- 120 (243)
T ss_dssp T-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHH-HHHHHHHT--EEEE---TTS---TTTSS-BSEEEE-----
T ss_pred CCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHH-HHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC---
Confidence 468999996654 4455554 35788888877655333 35677778888888887543 3421 37899999653
Q ss_pred ccc-cchHHHHHHHHhhCCCCe-EEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecce
Q 010274 291 DWL-QRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQT 352 (514)
Q Consensus 291 ~~~-~d~~~lL~el~RvLrPGG-~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~~ 352 (514)
.+. .....++......||..| ..+++. .+.+.....|.++++.+.++||.+.......
T Consensus 121 PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~----~~~~~s~~~~~~~Q~~l~~~gl~i~dii~~F 180 (243)
T PF01861_consen 121 PYTPEGLKLFLSRGIEALKGEGCAGYFGF----THKEASPDKWLEVQRFLLEMGLVITDIIPDF 180 (243)
T ss_dssp -SSHHHHHHHHHHHHHTB-STT-EEEEEE-----TTT--HHHHHHHHHHHHTS--EEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCceEEEEE----ecCcCcHHHHHHHHHHHHHCCcCHHHHHhhh
Confidence 233 233568899999998766 433322 2222235568899999999999887765553
No 256
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.20 E-value=0.22 Score=49.19 Aligned_cols=100 Identities=16% Similarity=0.270 Sum_probs=58.6
Q ss_pred ccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHH----HHHhcCCCccccCChhhhhHHHHHHHHHcCCC--e
Q 010274 190 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFG----AYLLSHDIIAMSLAPNDVHENQIQFALERGIP--S 263 (514)
Q Consensus 190 ~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a----~~La~~~V~gvdis~~dis~a~~~~A~~rg~~--~ 263 (514)
++...|++.+++++....+.++ ++.-++||||.|.-.+- ...-+-..+|.|+++..++.+........+.. +
T Consensus 55 PgRAdYih~laDLL~s~~g~~~--~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I 132 (292)
T COG3129 55 PGRADYIHHLADLLASTSGQIP--GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAI 132 (292)
T ss_pred CChhHHHHHHHHHHHhcCCCCC--cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhhe
Confidence 5678899999999987766555 34468999998865432 22223355667776666665554444332322 2
Q ss_pred EEEeecCCCCCC-----CCCCceEEEecccccc
Q 010274 264 TLGVLGTKRLPY-----PSRSFELAHCSRCRID 291 (514)
Q Consensus 264 ~~~~~d~~~lp~-----~~~sFDlV~~s~~~l~ 291 (514)
.+......+--| ..+.||++.|+--.+.
T Consensus 133 ~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 133 RLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred eEEeccCccccccccccccceeeeEecCCCcch
Confidence 222221111112 2568999999874333
No 257
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=93.14 E-value=0.38 Score=49.49 Aligned_cols=94 Identities=16% Similarity=0.270 Sum_probs=49.5
Q ss_pred cHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHh----cCCCccccCChhhhhHHHHHHHHHcCC--CeE
Q 010274 191 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGI--PST 264 (514)
Q Consensus 191 ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La----~~~V~gvdis~~dis~a~~~~A~~rg~--~~~ 264 (514)
+...|+..+.+++.......+ ..-++||||+|...+-..|. +-.++|.|+++..+..|.....+..+. .+.
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~---~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~ 157 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIP---EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIE 157 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS------EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEE
T ss_pred hhHHHHHHHHHHhhccccccc---cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceE
Confidence 456789999998876533221 14589999999875433333 457788888888887777555554233 344
Q ss_pred EEeecCC-C----CCCCCCCceEEEecc
Q 010274 265 LGVLGTK-R----LPYPSRSFELAHCSR 287 (514)
Q Consensus 265 ~~~~d~~-~----lp~~~~sFDlV~~s~ 287 (514)
+...... . +-.+++.||+.+|+-
T Consensus 158 l~~~~~~~~i~~~i~~~~e~~dftmCNP 185 (299)
T PF05971_consen 158 LRKQKNPDNIFDGIIQPNERFDFTMCNP 185 (299)
T ss_dssp EEE--ST-SSTTTSTT--S-EEEEEE--
T ss_pred EEEcCCccccchhhhcccceeeEEecCC
Confidence 4333211 1 122346899999975
No 258
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.73 E-value=0.55 Score=49.10 Aligned_cols=99 Identities=19% Similarity=0.143 Sum_probs=54.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhhhhHHHHHH----HHHcCC-----CeEEEeecCCCCCCC-CCC
Q 010274 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQF----ALERGI-----PSTLGVLGTKRLPYP-SRS 279 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~-----~V~gvdis~~dis~a~~~~----A~~rg~-----~~~~~~~d~~~lp~~-~~s 279 (514)
.+++|||+|.|.|.-..++-+. .++.++. +.+..+. +..-+. +..-++. .+++++ ...
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~-----sp~lrkV~~tl~~nv~t~~td~r~s~vt~--dRl~lp~ad~ 185 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEA-----SPALRKVGDTLAENVSTEKTDWRASDVTE--DRLSLPAADL 185 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhcc-----CHHHHHHHHHHHhhcccccCCCCCCccch--hccCCCccce
Confidence 4567999999998765554431 2222332 2222222 221111 1111222 344443 246
Q ss_pred ceEEEecccccccccch--HHHHHHHHhhCCCCeEEEEEeCCC
Q 010274 280 FELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 280 FDlV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~ 320 (514)
|++|+...-+++.-... ...++.+..+++|||.|+|..+..
T Consensus 186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 88887665433322211 348899999999999999988754
No 259
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=92.32 E-value=0.2 Score=44.91 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=28.1
Q ss_pred eEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHH
Q 010274 218 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQ 254 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~ 254 (514)
++||||||.|.++..++. ..++++|.++......+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHH
Confidence 489999999999988874 2588888887766555433
No 260
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=92.19 E-value=0.36 Score=44.21 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=58.5
Q ss_pred CccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCC-C-CCCCceEEEeccccccccc-----ch---HHHHHHHHhh
Q 010274 238 IIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-Y-PSRSFELAHCSRCRIDWLQ-----RD---GILLLELDRL 306 (514)
Q Consensus 238 V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp-~-~~~sFDlV~~s~~~l~~~~-----d~---~~lL~el~Rv 306 (514)
|.+.||-...+............. ++.++..+-+.+. + +.+++|+|+.+..-++..+ .+ -..++.+.++
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~l 81 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALEL 81 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHh
Confidence 567777666665554333332222 3666655544443 2 3348999997755444321 11 3489999999
Q ss_pred CCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHh---cCcEEEEEe
Q 010274 307 LRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS---MCWKIVSKK 349 (514)
Q Consensus 307 LrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~---~Gf~~v~~~ 349 (514)
|+|||.+.+..- ...+...+..+.+.+.++. ..|.+...+
T Consensus 82 L~~gG~i~iv~Y---~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~ 124 (140)
T PF06962_consen 82 LKPGGIITIVVY---PGHPGGKEESEAVEEFLASLDQKEFNVLKYQ 124 (140)
T ss_dssp EEEEEEEEEEE-----STCHHHHHHHHHHHHHHTS-TTTEEEEEEE
T ss_pred hccCCEEEEEEe---CCCCCCHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 999999999763 2233444444555555554 456665433
No 261
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=91.60 E-value=2.3 Score=39.99 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=71.4
Q ss_pred ECCCCchHHHHHhcC-----CCccccCChhhh-------hHHHHHHHHHcCCCeEEEeecCCCCC----CCCCCceEEEe
Q 010274 222 VGCGVASFGAYLLSH-----DIIAMSLAPNDV-------HENQIQFALERGIPSTLGVLGTKRLP----YPSRSFELAHC 285 (514)
Q Consensus 222 IGCGtG~~a~~La~~-----~V~gvdis~~di-------s~a~~~~A~~rg~~~~~~~~d~~~lp----~~~~sFDlV~~ 285 (514)
||=|.=+|+..|+.. .+++..+...+. ....++..++.|..+.+. .|+..+. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEEE
Confidence 566666788888742 445544433221 112222334445555443 3555543 24578999996
Q ss_pred ccccccccc------c---------hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 286 SRCRIDWLQ------R---------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 286 s~~~l~~~~------d---------~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
++- |.. + ...+++.+.++|+++|.+.++.-....+ ..| .++.++++.|+.+++...
T Consensus 82 NFP---H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py-----~~W-~i~~lA~~~gl~l~~~~~ 152 (166)
T PF10354_consen 82 NFP---HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY-----DSW-NIEELAAEAGLVLVRKVP 152 (166)
T ss_pred eCC---CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC-----ccc-cHHHHHHhcCCEEEEEec
Confidence 652 222 0 1338899999999999999987543221 224 467899999998886543
No 262
>PRK11524 putative methyltransferase; Provisional
Probab=90.87 E-value=0.59 Score=47.61 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=47.8
Q ss_pred EEEeecCCCC--CCCCCCceEEEecccc-c--c------------cccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChh
Q 010274 264 TLGVLGTKRL--PYPSRSFELAHCSRCR-I--D------------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE 326 (514)
Q Consensus 264 ~~~~~d~~~l--p~~~~sFDlV~~s~~~-l--~------------~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e 326 (514)
.+..+|.... .+++++||+|+++--. . . |..-....+.++.|+|||||.+++......
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~----- 84 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTEN----- 84 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchh-----
Confidence 3455554432 3557789999984210 0 0 111124689999999999999998642211
Q ss_pred HHHhHHHHHHHHHhcCcEEEEEecceEEEeccC
Q 010274 327 NRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 359 (514)
Q Consensus 327 ~~~~~~~l~~ll~~~Gf~~v~~~~~~~iw~Kp~ 359 (514)
.. ...++.+.||... ...||+|+.
T Consensus 85 ----~~-~~~~~~~~~f~~~----~~iiW~k~~ 108 (284)
T PRK11524 85 ----MP-FIDLYCRKLFTIK----SRIVWSYDS 108 (284)
T ss_pred ----hh-HHHHHHhcCcceE----EEEEEEeCC
Confidence 11 1234455677643 456899864
No 263
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=90.59 E-value=1.1 Score=47.91 Aligned_cols=128 Identities=21% Similarity=0.264 Sum_probs=71.5
Q ss_pred CCCCeEEEECCCCchHHHHHh----c-CCCccccCChhhhhHHHHHHHHHcCCC-eEEEeecCCCCC---CCCCCceEEE
Q 010274 214 GNIRNVLDVGCGVASFGAYLL----S-HDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLP---YPSRSFELAH 284 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La----~-~~V~gvdis~~dis~a~~~~A~~rg~~-~~~~~~d~~~lp---~~~~sFDlV~ 284 (514)
..+.||||+.+..|.=+.++| + ..|.+.|.+..-+.. ..+.+.+.|.. ......|...+| ++. +||-|.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~-l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKS-LKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHH-HHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 345789999999996555544 2 234555554433322 22334444554 344555555554 444 899998
Q ss_pred ----eccc-cc----------------ccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc-C
Q 010274 285 ----CSRC-RI----------------DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-C 342 (514)
Q Consensus 285 ----~s~~-~l----------------~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~-G 342 (514)
||.. ++ .+..-..++|..+..++++||+|+.++-.......+ ..+.-++++. .
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE-----~vV~yaL~K~p~ 392 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENE-----AVVDYALKKRPE 392 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhH-----HHHHHHHHhCCc
Confidence 3320 00 011112458889999999999999988654321111 1334445554 5
Q ss_pred cEEEEE
Q 010274 343 WKIVSK 348 (514)
Q Consensus 343 f~~v~~ 348 (514)
++++..
T Consensus 393 ~kL~p~ 398 (460)
T KOG1122|consen 393 VKLVPT 398 (460)
T ss_pred eEeccc
Confidence 555543
No 264
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=89.68 E-value=1.9 Score=43.29 Aligned_cols=102 Identities=21% Similarity=0.242 Sum_probs=55.2
Q ss_pred CCeEEEECCCCchHHHHHh---cCCCccccCChhh--hhHH--HHHHHH-HcCCCeEEEeec---CCCCCCCCCC-ceEE
Q 010274 216 IRNVLDVGCGVASFGAYLL---SHDIIAMSLAPND--VHEN--QIQFAL-ERGIPSTLGVLG---TKRLPYPSRS-FELA 283 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La---~~~V~gvdis~~d--is~a--~~~~A~-~rg~~~~~~~~d---~~~lp~~~~s-FDlV 283 (514)
..+||++|+|+|..+...+ ..++...|..... +... ..+.+. +.|..+.....+ .....+-... ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 4579999999996665554 2344444432211 1111 000111 112233222222 1111111123 9999
Q ss_pred EecccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 284 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 284 ~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
+++.+ +.....++.++.-+...|-.+|.+++..+
T Consensus 167 lasDv-vy~~~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 167 LASDV-VYEEESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEeee-eecCCcchhHHHHHHHHHhcCCeEEEEEe
Confidence 99986 44456677899999999999997666553
No 265
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=89.62 E-value=2 Score=45.22 Aligned_cols=120 Identities=23% Similarity=0.212 Sum_probs=64.9
Q ss_pred HHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC--------CCccccCChhhhhHHHHHHHHHcCC--CeE
Q 010274 195 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--------DIIAMSLAPNDVHENQIQFALERGI--PST 264 (514)
Q Consensus 195 y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--------~V~gvdis~~dis~a~~~~A~~rg~--~~~ 264 (514)
|....+.+++-..-.+.++ .+|||+.+..|+=++.|.++ .|++=|+++.-. .++.....+-. ...
T Consensus 138 ~rqeavSmlPvL~L~v~p~---~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~--~~L~~q~~~l~~~~~~ 212 (375)
T KOG2198|consen 138 YRQEAVSMLPVLALGVKPG---DKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRL--NMLVHQLKRLPSPNLL 212 (375)
T ss_pred hhhhhhhccchhhcccCCC---CeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHH--HHHHHHHhccCCccee
Confidence 4445666776544334333 57999999999888777752 344444443222 12222223321 122
Q ss_pred EEeecCCCCC---------CCCCCceEEEe----ccc-ccccccc-----------------hHHHHHHHHhhCCCCeEE
Q 010274 265 LGVLGTKRLP---------YPSRSFELAHC----SRC-RIDWLQR-----------------DGILLLELDRLLRPGGYF 313 (514)
Q Consensus 265 ~~~~d~~~lp---------~~~~sFDlV~~----s~~-~l~~~~d-----------------~~~lL~el~RvLrPGG~l 313 (514)
+...++...| .....||-|+| +.. .+....+ .-.+|....++||+||.+
T Consensus 213 v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~l 292 (375)
T KOG2198|consen 213 VTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRL 292 (375)
T ss_pred eecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEE
Confidence 2222222222 23346999987 111 1111110 123788899999999999
Q ss_pred EEEeCC
Q 010274 314 VYSSPE 319 (514)
Q Consensus 314 vis~P~ 319 (514)
+.|+-.
T Consensus 293 VYSTCS 298 (375)
T KOG2198|consen 293 VYSTCS 298 (375)
T ss_pred EEeccC
Confidence 998854
No 266
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=88.86 E-value=0.25 Score=43.31 Aligned_cols=38 Identities=21% Similarity=0.575 Sum_probs=27.4
Q ss_pred CceEEEecccccccc-----cc-hHHHHHHHHhhCCCCeEEEEEe
Q 010274 279 SFELAHCSRCRIDWL-----QR-DGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 279 sFDlV~~s~~~l~~~-----~d-~~~lL~el~RvLrPGG~lvis~ 317 (514)
.||+|.|.. +.-|+ ++ ...+++.+.+.|+|||.|++.-
T Consensus 1 ~yDvilclS-VtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLS-VTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEE-eeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 489999865 44443 12 2559999999999999999854
No 267
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=87.59 E-value=1.3 Score=46.45 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=58.9
Q ss_pred CCeEEEECCC-CchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCG-VASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+|+=+|+| .|..+..++. ++|+++ +.++...+.|++.|....+.-.+.....--.+.||+|+..-
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~-----~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv---- 237 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAI-----TRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV---- 237 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEE-----eCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC----
Confidence 4678888887 3456666664 455555 55666678888887765444222222221123499998432
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
. ...+....+.||+||.+++..-.
T Consensus 238 --~--~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 --G--PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred --C--hhhHHHHHHHHhcCCEEEEECCC
Confidence 1 35788899999999999987643
No 268
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=87.50 E-value=0.97 Score=44.11 Aligned_cols=99 Identities=10% Similarity=0.027 Sum_probs=49.8
Q ss_pred CCeEEEECCCCchHHHHHh--------cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC-------C-CCCC
Q 010274 216 IRNVLDVGCGVASFGAYLL--------SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-------Y-PSRS 279 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La--------~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp-------~-~~~s 279 (514)
++.|+|+|.-.|.-+.+++ .+.|+++|+.........++. .-....+.+.++|..... . ....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~-hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES-HPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh-ccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 4689999999887665554 257899999544432222111 001246788888754321 1 1123
Q ss_pred ceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 280 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 280 FDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
-.+|+ -. ..|...+....|+....++++|+|+++.+
T Consensus 112 ~vlVi-lD-s~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 112 PVLVI-LD-SSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp SEEEE-ES-S----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred ceEEE-EC-CCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 34555 22 34445566677888999999999999854
No 269
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=87.39 E-value=5 Score=38.78 Aligned_cols=90 Identities=21% Similarity=0.243 Sum_probs=50.8
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEee-cCCC--------CCCCCCCce
Q 010274 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVL-GTKR--------LPYPSRSFE 281 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~-d~~~--------lp~~~~sFD 281 (514)
..+|||+||..|+++.-..+ ..|.|+|+-....-+ | +.+..+ |..+ ..+++...|
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~---------G--a~~i~~~dvtdp~~~~ki~e~lp~r~Vd 138 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPE---------G--ATIIQGNDVTDPETYRKIFEALPNRPVD 138 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCC---------C--cccccccccCCHHHHHHHHHhCCCCccc
Confidence 46899999999999877664 246677764432211 1 111111 2111 013567899
Q ss_pred EEEeccccccc----ccch-------HHHHHHHHhhCCCCeEEEEEe
Q 010274 282 LAHCSRCRIDW----LQRD-------GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 282 lV~~s~~~l~~----~~d~-------~~lL~el~RvLrPGG~lvis~ 317 (514)
+|++-+ +..- +.|. ..++.-....++|+|.|+.-.
T Consensus 139 vVlSDM-apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 139 VVLSDM-APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred EEEecc-CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 999643 1111 1111 224445556788999999855
No 270
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=86.84 E-value=3.2 Score=41.64 Aligned_cols=129 Identities=22% Similarity=0.270 Sum_probs=67.6
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
+.+|+|||||.=-++..... ..+++.||+...+.--. .+....+.+..+.+.|...-+ +....|+++..- +++
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~-~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK-~lp 182 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLN-AFLAVLGVPHDARVRDLLSDP-PKEPADLALLLK-TLP 182 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHH-HHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET--HH
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHH-HHHHhhCCCcceeEeeeeccC-CCCCcchhhHHH-HHH
Confidence 57899999999999887663 24556665544332111 222344677777777765554 335789998654 455
Q ss_pred cccchHH-HHHHHHhhCCCCeEEEEEeCCC-C-CCChhHHHhH-HHHHHHHHhcCcEEEEE
Q 010274 292 WLQRDGI-LLLELDRLLRPGGYFVYSSPEA-Y-AHDPENRRIW-NAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 292 ~~~d~~~-lL~el~RvLrPGG~lvis~P~~-~-~~~~e~~~~~-~~l~~ll~~~Gf~~v~~ 348 (514)
-++.... .-.++.+.++- =++++|.|.- . .+.......+ ..++.++..-+|.+.+.
T Consensus 183 ~le~q~~g~g~~ll~~~~~-~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~ 242 (251)
T PF07091_consen 183 CLERQRRGAGLELLDALRS-PHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRL 242 (251)
T ss_dssp HHHHHSTTHHHHHHHHSCE-SEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEE
T ss_pred HHHHHhcchHHHHHHHhCC-CeEEEeccccccccCccccccCHHHHHHHhcccCCceeeee
Confidence 4443311 22333333332 2566666632 1 1111112222 46788888889885443
No 271
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=85.70 E-value=0.98 Score=42.40 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=44.2
Q ss_pred CCceEEEeccccccccc--------ch---HHHHHHHHhhCCCCeEEEEEeCCCCCCChhH-HHhHHHHHHHHHhcCcEE
Q 010274 278 RSFELAHCSRCRIDWLQ--------RD---GILLLELDRLLRPGGYFVYSSPEAYAHDPEN-RRIWNAMYDLLKSMCWKI 345 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~~--------d~---~~lL~el~RvLrPGG~lvis~P~~~~~~~e~-~~~~~~l~~ll~~~Gf~~ 345 (514)
++||.+.|.. +++|.. |+ ...+.++.++|||||.|+++.|---....-+ .+.+..+.-.+--.||+.
T Consensus 62 ~~fD~~as~~-siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~ 140 (177)
T PF03269_consen 62 GSFDFAASFS-SIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEW 140 (177)
T ss_pred ccchhhheec-hhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEE
Confidence 6899998655 566541 11 4589999999999999999988432111111 123334444455568887
Q ss_pred EEE
Q 010274 346 VSK 348 (514)
Q Consensus 346 v~~ 348 (514)
+..
T Consensus 141 i~t 143 (177)
T PF03269_consen 141 IDT 143 (177)
T ss_pred Eee
Confidence 764
No 272
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.91 E-value=0.98 Score=44.73 Aligned_cols=111 Identities=17% Similarity=0.226 Sum_probs=62.9
Q ss_pred CCeEEEECCCCchHHHHHhcC-------------CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC--------
Q 010274 216 IRNVLDVGCGVASFGAYLLSH-------------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-------- 274 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~-------------~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp-------- 274 (514)
.++++|+.+..|+++..|.+. .|+++|+-+... ...+...++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP-----------I~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP-----------IEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc-----------cCceEEeecccCCHhHHHHHHHH
Confidence 468999999999999888731 155565544221 112344555544321
Q ss_pred CCCCCceEEEeccc----ccccccch------HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhc
Q 010274 275 YPSRSFELAHCSRC----RIDWLQRD------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 341 (514)
Q Consensus 275 ~~~~sFDlV~~s~~----~l~~~~d~------~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~ 341 (514)
|..+.-|+|+|-.+ -+|-+... -..|.-...+|||||.|+--. .+.......+..++.++++.
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi----fRg~~tslLysql~~ff~kv 183 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI----FRGRDTSLLYSQLRKFFKKV 183 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh----hccCchHHHHHHHHHHhhce
Confidence 55568899998431 12322221 224556678999999998422 12222222345566665553
No 273
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=84.84 E-value=2.1 Score=47.08 Aligned_cols=126 Identities=13% Similarity=0.123 Sum_probs=75.0
Q ss_pred CCeEEEECCCCchHHHHHhc------C--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLLS------H--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~------~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~ 287 (514)
...|+=+|+|-|-+.....+ + .+.+++-.|+++..-+-..-+.-...+.++..|...++-+....|++++ .
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-E 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-E 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-H
Confidence 45688999999977655442 2 4556766776654332211122244678888898888855678999984 3
Q ss_pred cccccccc-h--HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCc
Q 010274 288 CRIDWLQR-D--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 343 (514)
Q Consensus 288 ~~l~~~~d-~--~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf 343 (514)
++.-..| . .+.|..+.+.|||.|..+=+.-..|-..-.....|.++.+.-....|
T Consensus 447 -LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~v~a~~~~~~f 504 (649)
T KOG0822|consen 447 -LLGSFGDNELSPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQEVKATNDPNAF 504 (649)
T ss_pred -hhccccCccCCHHHHHHHHhhcCCCceEccchhhhhhcccccHHHHHHHHhcCCcccc
Confidence 2332322 2 45999999999999876622211121222223456666665553333
No 274
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=84.80 E-value=2.5 Score=48.17 Aligned_cols=59 Identities=14% Similarity=0.007 Sum_probs=40.6
Q ss_pred CCceEEEecccccccccch--HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEE
Q 010274 278 RSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~ 348 (514)
..||+++.-...-...++. ..+|.++.|+++|||.|.=.+. -..+++-|..+||++.+.
T Consensus 165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~------------a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS------------AGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh------------HHHHHHHHHHcCCeeeec
Confidence 4699998543112122222 6699999999999999983221 236788899999988754
No 275
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=81.91 E-value=30 Score=34.18 Aligned_cols=119 Identities=11% Similarity=0.078 Sum_probs=74.6
Q ss_pred eEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecCCCCCC-CCCCceEEEecccccc
Q 010274 218 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY-PSRSFELAHCSRCRID 291 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~~~lp~-~~~sFDlV~~s~~~l~ 291 (514)
++.||||-.|.+..+|.. ..+++.|+++.-+..+..++.+.... .+....+|.. .++ .+..+|.|+.+. +.
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl-~~l~~~d~~d~ivIAG--MG 95 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGL-AVLELEDEIDVIVIAG--MG 95 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCc-cccCccCCcCEEEEeC--Cc
Confidence 499999999999999984 25678888888777776555554432 2344444431 223 334789887554 11
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
-.-...+|.+-..-|+.==+|++ -|... -..+++.+...+|.++...-
T Consensus 96 -G~lI~~ILee~~~~l~~~~rlIL-QPn~~---------~~~LR~~L~~~~~~I~~E~i 143 (226)
T COG2384 96 -GTLIREILEEGKEKLKGVERLIL-QPNIH---------TYELREWLSANSYEIKAETI 143 (226)
T ss_pred -HHHHHHHHHHhhhhhcCcceEEE-CCCCC---------HHHHHHHHHhCCceeeeeee
Confidence 11224567777776664445555 23221 23678899999998886543
No 276
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=79.75 E-value=6.9 Score=41.25 Aligned_cols=99 Identities=15% Similarity=0.018 Sum_probs=55.4
Q ss_pred CCeEEEECCCC-chHHHHHhcCCCccc-cCChhhhhHHHHHHHHHcCCCeEEEeecCCC-----C-CC-CCCCceEEEec
Q 010274 216 IRNVLDVGCGV-ASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKR-----L-PY-PSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La~~~V~gv-dis~~dis~a~~~~A~~rg~~~~~~~~d~~~-----l-p~-~~~sFDlV~~s 286 (514)
..+||.+|||. |.++..++... +. .+...+.++.+.+.+++.+. ..+......+ + .+ ..+.+|+|+..
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~--g~~~vi~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLL--GAERVIAIDRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 35799999987 77777777431 11 12222344556677776632 2222111110 0 11 22468999853
Q ss_pred ccc----------cc----cccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 287 RCR----------ID----WLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 287 ~~~----------l~----~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
... +. -..+....+.++.+.|+++|.+++..
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 210 01 11334568899999999999999865
No 277
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=79.30 E-value=7.2 Score=43.28 Aligned_cols=97 Identities=14% Similarity=0.141 Sum_probs=56.7
Q ss_pred CCCeEEEECCCCchH-HHHHh---cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCC---------CCC-------
Q 010274 215 NIRNVLDVGCGVASF-GAYLL---SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK---------RLP------- 274 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~-a~~La---~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~---------~lp------- 274 (514)
.+.+|+=+|||.-.+ +...+ ++.|+++ |..+..++.+++.|........... .+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~-----D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~ 238 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAF-----DTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAE 238 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEE-----eCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHH
Confidence 357899999996544 43444 3344444 5566666777776654221111000 000
Q ss_pred ---CCC--CCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 275 ---YPS--RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 275 ---~~~--~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+.+ +.+|+|+... .....+.+..+.+++.+.+||||.++...
T Consensus 239 ~~~~~~~~~gaDVVIeta-g~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 239 MALFAEQAKEVDIIITTA-LIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHhccCCCCEEEECC-CCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 011 3699999665 23332334444699999999999998754
No 278
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=78.37 E-value=2 Score=37.69 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=19.6
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCcccc
Q 010274 216 IRNVLDVGCGVASFGAYLLSH--DIIAMS 242 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~--~V~gvd 242 (514)
.....|||||.|.+..-|... .-.|+|
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD 87 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGID 87 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCccccc
Confidence 346999999999988887743 334444
No 279
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=77.05 E-value=5.7 Score=40.87 Aligned_cols=102 Identities=16% Similarity=0.108 Sum_probs=60.5
Q ss_pred CCCCeEEEECCCCchHHHHHhcC-CCccccCChhhhhHHHHHHHHHc---------CCCeEEEeecCCCC--CCCCCCce
Q 010274 214 GNIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL--PYPSRSFE 281 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La~~-~V~gvdis~~dis~a~~~~A~~r---------g~~~~~~~~d~~~l--p~~~~sFD 281 (514)
.+++++|=||-|.|.+......+ .|--+.+. ++.+..++..++- +..+.+..+|...+ ....++||
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~--eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLC--EIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeee--hhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 34578999999999988776643 22222222 2223333332221 34566666663222 13468999
Q ss_pred EEEecccccccccc----hHHHHHHHHhhCCCCeEEEEEeC
Q 010274 282 LAHCSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 282 lV~~s~~~l~~~~d----~~~lL~el~RvLrPGG~lvis~P 318 (514)
+|+.-.. -.-.+. ...++..+.+.||+||+++...-
T Consensus 198 Vii~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 198 VIITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEEEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 9985321 111111 14588899999999999998663
No 280
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=76.25 E-value=18 Score=36.68 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=66.2
Q ss_pred eEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCC--CCCceEEEeccc----
Q 010274 218 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP--SRSFELAHCSRC---- 288 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~--~~sFDlV~~s~~---- 288 (514)
+++|+-||.|.++..+... .+.++|+++ ..++..+...... ....|+..+... ...+|+++.+.-
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~-----~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDK-----SAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCH-----HHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhh
Confidence 5999999999987777643 234555544 3334444433222 445565555422 246999997421
Q ss_pred -ccc---cccch-HHHHHH---HHhhCCCCeEEEEEe-CCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 289 -RID---WLQRD-GILLLE---LDRLLRPGGYFVYSS-PEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 289 -~l~---~~~d~-~~lL~e---l~RvLrPGG~lvis~-P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
... ...+. ..++.+ +.+.++|. ++++.- +.... ......+..+.+.++++||.+....-.
T Consensus 76 S~ag~~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~g~~~--~~~~~~~~~i~~~l~~~GY~~~~~~l~ 144 (275)
T cd00315 76 SIAGKRKGFEDTRGTLFFEIIRILKEKKPK-YFLLENVKGLLT--HDNGNTLKVILNTLEELGYNVYWKLLN 144 (275)
T ss_pred hHHhhcCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCcchhc--cCchHHHHHHHHHHHhCCcEEEEEEEE
Confidence 000 11222 223433 44445665 333322 22211 112245778888999999987554443
No 281
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=75.16 E-value=4.3 Score=38.65 Aligned_cols=56 Identities=23% Similarity=0.318 Sum_probs=35.3
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcC-cEEEEEecceEEEecc
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVSKKDQTVIWAKP 358 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~G-f~~v~~~~~~~iw~Kp 358 (514)
|..-....+.++.|+|||||.+++......... .....+.+..| |... ...+|.|+
T Consensus 31 y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~-------~~~~~~~~~~g~~~~~----~~iiW~K~ 87 (231)
T PF01555_consen 31 YLEWMEEWLKECYRVLKPGGSIFIFIDDREIAG-------FLFELALEIFGGFFLR----NEIIWNKP 87 (231)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECT-------HHHHHHHHHHTT-EEE----EEEEEE-S
T ss_pred HHHHHHHHHHHHHhhcCCCeeEEEEecchhhhH-------HHHHHHHHHhhhhhee----ccceeEec
Confidence 333446789999999999999998765443211 12334556667 8665 46789887
No 282
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=74.40 E-value=23 Score=39.06 Aligned_cols=117 Identities=16% Similarity=0.205 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc----C----CCccccCChhhhhHHHHHHHHHcCCC--e
Q 010274 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----H----DIIAMSLAPNDVHENQIQFALERGIP--S 263 (514)
Q Consensus 194 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~----~----~V~gvdis~~dis~a~~~~A~~rg~~--~ 263 (514)
...+.+.+++.. ....+|.|-.||+|++...... . .+.|.++......-+..+...+ +.+ +
T Consensus 173 ~v~~liv~~l~~--------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh-gi~~~~ 243 (489)
T COG0286 173 EVSELIVELLDP--------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH-GIEGDA 243 (489)
T ss_pred HHHHHHHHHcCC--------CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh-CCCccc
Confidence 345556666653 1224899999999987655442 1 2345555444443333333333 333 4
Q ss_pred EEEeecCCCCCC-----CCCCceEEEecccc--ccccc---------------------ch-HHHHHHHHhhCCCCeEEE
Q 010274 264 TLGVLGTKRLPY-----PSRSFELAHCSRCR--IDWLQ---------------------RD-GILLLELDRLLRPGGYFV 314 (514)
Q Consensus 264 ~~~~~d~~~lp~-----~~~sFDlV~~s~~~--l~~~~---------------------d~-~~lL~el~RvLrPGG~lv 314 (514)
....+|...-|. ..+.||.|+++.-. -.|.. .. ..+++.+...|+|||+..
T Consensus 244 ~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aa 323 (489)
T COG0286 244 NIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAA 323 (489)
T ss_pred cccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEE
Confidence 555555444442 33679999874211 11110 11 458999999999999888
Q ss_pred EEeCC
Q 010274 315 YSSPE 319 (514)
Q Consensus 315 is~P~ 319 (514)
+..|.
T Consensus 324 ivl~~ 328 (489)
T COG0286 324 IVLPD 328 (489)
T ss_pred EEecC
Confidence 87765
No 283
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=74.31 E-value=10 Score=38.39 Aligned_cols=92 Identities=17% Similarity=0.242 Sum_probs=51.3
Q ss_pred CeEEEECCC-CchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC----CCCCCCCceEEEecccccc
Q 010274 217 RNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR----LPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 217 ~~VLDIGCG-tG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~----lp~~~~sFDlV~~s~~~l~ 291 (514)
.+||..|+| .|..+..++... +..+...+.++...+.+++.+....+...+... .....+.+|+|+....
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g--- 241 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVG--- 241 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCC---
Confidence 578888876 466666666421 122222233445556666656532221111000 0123457999884321
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
....+.++.+.|+++|.++...
T Consensus 242 ----~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 242 ----TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred ----CHHHHHHHHHHhhcCCEEEEEC
Confidence 1357889999999999999764
No 284
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=73.91 E-value=1.7 Score=44.23 Aligned_cols=42 Identities=26% Similarity=0.398 Sum_probs=26.3
Q ss_pred CceEEEecccccccccchHHH-HHHHHhhCCCCeEEEEEeCCCC
Q 010274 279 SFELAHCSRCRIDWLQRDGIL-LLELDRLLRPGGYFVYSSPEAY 321 (514)
Q Consensus 279 sFDlV~~s~~~l~~~~d~~~l-L~el~RvLrPGG~lvis~P~~~ 321 (514)
.||+|.++.. +.-......+ ......+++++|.+++..-..|
T Consensus 196 ~ydlIlsSet-iy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~~y 238 (282)
T KOG2920|consen 196 HYDLILSSET-IYSIDSLAVLYLLHRPCLLKTDGVFYVAAKKLY 238 (282)
T ss_pred chhhhhhhhh-hhCcchhhhhHhhhhhhcCCccchhhhhhHhhc
Confidence 6888887763 3223333333 6667778888998887554433
No 285
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=72.78 E-value=11 Score=38.87 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=51.0
Q ss_pred CCeEEEECCC-CchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEee--cCCCCCCCCCCceEEEeccc
Q 010274 216 IRNVLDVGCG-VASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVL--GTKRLPYPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~--d~~~lp~~~~sFDlV~~s~~ 288 (514)
..+||=+||| .|.++..++.. .|+++ +.++...+.+++.|....+... +..++....+.||+|+-...
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~-----~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G 244 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCA-----DVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG 244 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEE-----eCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC
Confidence 3578888875 33444445532 23334 4445566778777754332111 11111111235899884431
Q ss_pred ccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
. ...+....++||+||.+++..
T Consensus 245 ------~-~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 245 ------H-PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred ------C-HHHHHHHHHHhhcCCEEEEEc
Confidence 1 246788899999999999865
No 286
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=72.70 E-value=6.4 Score=40.44 Aligned_cols=63 Identities=22% Similarity=0.296 Sum_probs=44.0
Q ss_pred CCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCC-CChhHHHhH-HHHHHHHHhcCcEEE
Q 010274 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIW-NAMYDLLKSMCWKIV 346 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~-~~~e~~~~~-~~l~~ll~~~Gf~~v 346 (514)
+.||+|+.+....|.+.+ ++.++++|+|.|++.+..... -..+..+.+ .++.++++.+||+.+
T Consensus 221 ~~Fd~ifvs~s~vh~L~p------~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 221 NFFDLIFVSCSMVHFLKP------ELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred CCCCEEEEhhhhHhhcch------HHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 679999987754554332 377899999999997753322 223333434 689999999999754
No 287
>KOG2730 consensus Methylase [General function prediction only]
Probab=72.36 E-value=1.9 Score=42.47 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=44.4
Q ss_pred CeEEEECCCCchHHHHHh--cCCCccccCChhhhhHHHHHHHHHcCC--CeEEEeecCCC----CCCCCCCceEEEec
Q 010274 217 RNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR----LPYPSRSFELAHCS 286 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La--~~~V~gvdis~~dis~a~~~~A~~rg~--~~~~~~~d~~~----lp~~~~sFDlV~~s 286 (514)
..|+|.-||.|.-+..++ ...|+++|++|.-+.-+. ..++--|+ .+.|.++|..+ +.+....+|+|+-+
T Consensus 96 ~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~Ak-hNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 96 EVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACAR-HNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred chhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHh-ccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 469999999998877776 457889999887664333 22333354 46788887544 33444446666644
No 288
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=70.35 E-value=19 Score=36.92 Aligned_cols=123 Identities=17% Similarity=0.172 Sum_probs=76.0
Q ss_pred CCeEEEECCCCchHHHHHh--c--CCCccccCChhhhhHHHHHHHHHcCCC-eEEEeecCCCCCCC---CCCceEEEecc
Q 010274 216 IRNVLDVGCGVASFGAYLL--S--HDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYP---SRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La--~--~~V~gvdis~~dis~a~~~~A~~rg~~-~~~~~~d~~~lp~~---~~sFDlV~~s~ 287 (514)
++.|+=+| -.-.++.+++ + ..|..+|++..-+.- ..++|++.|.+ +...+.|.. -|+| .+.||+.+.--
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~f-i~k~aee~g~~~ie~~~~Dlr-~plpe~~~~kFDvfiTDP 229 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKF-IEKVAEELGYNNIEAFVFDLR-NPLPEDLKRKFDVFITDP 229 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHH-HHHHHHHhCccchhheeehhc-ccChHHHHhhCCeeecCc
Confidence 46799999 3333343333 2 356677766543321 22456666765 666666653 3444 36899988432
Q ss_pred cccccccchHHHHHHHHhhCCCC---eEEEEEeCCCCCCChhHHHhHHHHHH-HHHhcCcEEEEEe
Q 010274 288 CRIDWLQRDGILLLELDRLLRPG---GYFVYSSPEAYAHDPENRRIWNAMYD-LLKSMCWKIVSKK 349 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPG---G~lvis~P~~~~~~~e~~~~~~~l~~-ll~~~Gf~~v~~~ 349 (514)
.+-+.....++..-...||.- |+|-++. .......|.++++ +...+||.+....
T Consensus 230 --peTi~alk~FlgRGI~tLkg~~~aGyfgiT~------ressidkW~eiQr~lIn~~gvVITdii 287 (354)
T COG1568 230 --PETIKALKLFLGRGIATLKGEGCAGYFGITR------RESSIDKWREIQRILINEMGVVITDII 287 (354)
T ss_pred --hhhHHHHHHHHhccHHHhcCCCccceEeeee------ccccHHHHHHHHHHHHHhcCeeeHhhh
Confidence 233333455677777777766 8888864 3344567999999 8899999765433
No 289
>PRK10742 putative methyltransferase; Provisional
Probab=69.73 E-value=18 Score=36.35 Aligned_cols=68 Identities=15% Similarity=0.071 Sum_probs=41.6
Q ss_pred eEEEECCCCchHHHHHh--cCCCccccCChhhhhHHHHHHHHHc-------C----CCeEEEeecCCC-CCCCCCCceEE
Q 010274 218 NVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHENQIQFALER-------G----IPSTLGVLGTKR-LPYPSRSFELA 283 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La--~~~V~gvdis~~dis~a~~~~A~~r-------g----~~~~~~~~d~~~-lp~~~~sFDlV 283 (514)
+|||.=+|+|..+..++ ++.|+.++-++....- ++...++ + .++.+...|... +.-...+||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaal--L~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAAL--LDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHH--HHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence 79999999999999988 4568888887754322 2222222 1 134555555322 22122479999
Q ss_pred Eecc
Q 010274 284 HCSR 287 (514)
Q Consensus 284 ~~s~ 287 (514)
+.--
T Consensus 169 YlDP 172 (250)
T PRK10742 169 YLDP 172 (250)
T ss_pred EECC
Confidence 9654
No 290
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=69.64 E-value=1.3e+02 Score=30.30 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=62.7
Q ss_pred CCeEEEECCCCchHHHHHhc-CCCccccCChhhhhHHHHHHHHHcC----CCeEEEeecCC-CC-------CCCCCCceE
Q 010274 216 IRNVLDVGCGVASFGAYLLS-HDIIAMSLAPNDVHENQIQFALERG----IPSTLGVLGTK-RL-------PYPSRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-~~V~gvdis~~dis~a~~~~A~~rg----~~~~~~~~d~~-~l-------p~~~~sFDl 282 (514)
...|+.+|||-=+-+..|.. ..+...+++-.++-+...+...+.+ .+..++..|.. .+ .|....--+
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 35799999998877777753 2456667765555444444444322 23455555543 11 121122224
Q ss_pred EEecccccccccch--HHHHHHHHhhCCCCeEEEEEeC
Q 010274 283 AHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 283 V~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P 318 (514)
++ ..+++.|++.. ..+|..+.+...||+.+++...
T Consensus 162 ~i-~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 162 WL-WEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred ee-ecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 44 56678887654 5689999998889999998643
No 291
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=69.15 E-value=9.8 Score=34.11 Aligned_cols=61 Identities=18% Similarity=0.136 Sum_probs=39.3
Q ss_pred CCceEEEecccccccccch--HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEec
Q 010274 278 RSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~ 350 (514)
..||+|+--...-.-.++. ..+++++.++++|||.+.-.+- -..+++.+.++||.+.+...
T Consensus 49 ~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~------------a~~Vr~~L~~aGF~v~~~~g 111 (124)
T PF05430_consen 49 ARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSS------------AGAVRRALQQAGFEVEKVPG 111 (124)
T ss_dssp T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--------------BHHHHHHHHHCTEEEEEEE-
T ss_pred ccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeec------------hHHHHHHHHHcCCEEEEcCC
Confidence 5799998432111111221 6699999999999999884221 13678999999999876543
No 292
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=68.10 E-value=29 Score=34.92 Aligned_cols=96 Identities=18% Similarity=0.185 Sum_probs=60.5
Q ss_pred CeEEEECCCCchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCC----CCCCceEEEecc
Q 010274 217 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY----PSRSFELAHCSR 287 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~----~~~sFDlV~~s~ 287 (514)
.+||=+|+++|..-.+..+ .-|.+++++... -...++.|++|- ++.-++-|+ +.|. .-.-.|+|++--
T Consensus 158 sKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rs-GRdL~nmAkkRt-NiiPIiEDA-rhP~KYRmlVgmVDvIFaDv 234 (317)
T KOG1596|consen 158 SKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRS-GRDLINMAKKRT-NIIPIIEDA-RHPAKYRMLVGMVDVIFADV 234 (317)
T ss_pred ceEEEeeccCCceeehhhcccCCCceEEEEEecccc-hHHHHHHhhccC-CceeeeccC-CCchheeeeeeeEEEEeccC
Confidence 5799999999987766663 356788887643 244456777663 333333333 2331 123577777432
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
........+..+..--||+||.|+++..
T Consensus 235 ---aqpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 235 ---AQPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred ---CCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 1222234577888999999999999774
No 293
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=68.02 E-value=47 Score=35.35 Aligned_cols=100 Identities=17% Similarity=0.230 Sum_probs=57.1
Q ss_pred CCCeEEEECCCCch----HHHHHhcC-------CCccccC----Chhhh---hHHHHHHHHHcCCCeEEEee---cCCCC
Q 010274 215 NIRNVLDVGCGVAS----FGAYLLSH-------DIIAMSL----APNDV---HENQIQFALERGIPSTLGVL---GTKRL 273 (514)
Q Consensus 215 ~~~~VLDIGCGtG~----~a~~La~~-------~V~gvdi----s~~di---s~a~~~~A~~rg~~~~~~~~---d~~~l 273 (514)
+.-+|+|+|.|.|. +...|+.+ .||+++. ....+ .....++|+..|++..|... +.+.+
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 33579999999993 45555532 4677776 32222 33344667777888877653 22222
Q ss_pred -----CCCCCCceEEEecccccccccc-------hHHHHHHHHhhCCCCeEEEE
Q 010274 274 -----PYPSRSFELAHCSRCRIDWLQR-------DGILLLELDRLLRPGGYFVY 315 (514)
Q Consensus 274 -----p~~~~sFDlV~~s~~~l~~~~d-------~~~lL~el~RvLrPGG~lvi 315 (514)
...++..=+|-|.+ .+|++.+ +...+-...|.|+|.-..+.
T Consensus 190 ~~~~l~~~~~E~laVn~~~-~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMF-QLHHLLDESGALENPRDAFLRVIRSLNPKVVVLV 242 (374)
T ss_pred CHHHhCccCCcEEEEEeeh-hhhhhccccccccchHHHHHHHHHhcCCCEEEEE
Confidence 12223322333444 5666642 33456677789999855544
No 294
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=67.80 E-value=9.2 Score=40.21 Aligned_cols=103 Identities=19% Similarity=0.110 Sum_probs=60.6
Q ss_pred CCeEEEECCCCchHHHHHh--cCCCccccCChhhhhHH---HH---HHHHHcCC---CeEEEeecCCCCCCC-CCCceEE
Q 010274 216 IRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHEN---QI---QFALERGI---PSTLGVLGTKRLPYP-SRSFELA 283 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La--~~~V~gvdis~~dis~a---~~---~~A~~rg~---~~~~~~~d~~~lp~~-~~sFDlV 283 (514)
+..|+|-=.|||++....+ ++.|+|.||+..++... .. ..-++-|. ...+..+|...-|+- ...||.|
T Consensus 209 GdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fDaI 288 (421)
T KOG2671|consen 209 GDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFDAI 288 (421)
T ss_pred CCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceeeEE
Confidence 3579999999998866655 57788999887766511 10 01112221 123455665555543 4579999
Q ss_pred Eecc-----------------------cccccccch---------HHHHHHHHhhCCCCeEEEEEeC
Q 010274 284 HCSR-----------------------CRIDWLQRD---------GILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 284 ~~s~-----------------------~~l~~~~d~---------~~lL~el~RvLrPGG~lvis~P 318 (514)
+|-- ....|.+.. ..+|.-..+.|.-||++++-.|
T Consensus 289 vcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 289 VCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred EeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 9921 001122211 2356666788888888887555
No 295
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.33 E-value=26 Score=32.70 Aligned_cols=68 Identities=9% Similarity=0.038 Sum_probs=41.1
Q ss_pred CeEEEECCCCchHHHHHhc---CCCccccCChhhhhHHHHHHHHHc-CCCeEEEeecCCCCCCCCCCceEEE
Q 010274 217 RNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAH 284 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d~~~lp~~~~sFDlV~ 284 (514)
.+.+|+|.|.|.+-...+. ..-+|+++.+.-+.-+....-++. +....|..-|+....+.+-.+-+|+
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviF 145 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIF 145 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEe
Confidence 5799999999988777664 345788888876655554333332 2344555555555544433333333
No 296
>PHA01634 hypothetical protein
Probab=66.49 E-value=19 Score=32.85 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=24.3
Q ss_pred CCCeEEEECCCCchHHHHHh--c-CCCccccCChh
Q 010274 215 NIRNVLDVGCGVASFGAYLL--S-HDIIAMSLAPN 246 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La--~-~~V~gvdis~~ 246 (514)
+.++|+|||++.|..+++++ + ..|.+++..+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~k 62 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEK 62 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHH
Confidence 34789999999999998887 3 35777766553
No 297
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=66.04 E-value=13 Score=39.35 Aligned_cols=98 Identities=18% Similarity=0.209 Sum_probs=63.6
Q ss_pred CCeEEEECCCCchHHHHHhc-C---CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCC-CCCceEEEeccccc
Q 010274 216 IRNVLDVGCGVASFGAYLLS-H---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~-~---~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~-~~sFDlV~~s~~~l 290 (514)
..+|||.=+|||.=++..+. . .++.-|++|....-...+.....+.+......|+..+-.. ...||+|= +
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~ID-----i 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVID-----I 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEe-----c
Confidence 46899999999987777762 2 3555666666555444444333344555544554333221 26788884 2
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
.-...+..++..+.+.+|.||++.++..
T Consensus 128 DPFGSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 128 DPFGSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred CCCCCCchHHHHHHHHhhcCCEEEEEec
Confidence 2234567799999999999999999764
No 298
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=64.36 E-value=8.4 Score=41.09 Aligned_cols=134 Identities=14% Similarity=0.145 Sum_probs=71.3
Q ss_pred eecCCCCCCCCccHHHHHHHHHHHhcCCCCcC-CCCCCCCeEEEECCCCchHHHHHh-c----CCCccccCChhhhhHHH
Q 010274 179 INFPGGGTHFHDGADKYILALARMLKFPSDKL-NNGGNIRNVLDVGCGVASFGAYLL-S----HDIIAMSLAPNDVHENQ 252 (514)
Q Consensus 179 ~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l-~~~~~~~~VLDIGCGtG~~a~~La-~----~~V~gvdis~~dis~a~ 252 (514)
..++..+..|-+....+.+.+.-++-...... ......-+|||.=+|+|.=+...+ + ..|+.-|+++..+....
T Consensus 12 ~~~~~~~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~ 91 (377)
T PF02005_consen 12 ITIPKKAPVFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIK 91 (377)
T ss_dssp SSTTTTSSSS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHH
T ss_pred eecCCCCCcccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHH
Confidence 34666677777777777776554331000000 000122479999999996555554 3 24555566655443322
Q ss_pred HHHHHHcCCC---eEEEeecCCCCC-CCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 253 IQFALERGIP---STLGVLGTKRLP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 253 ~~~A~~rg~~---~~~~~~d~~~lp-~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
+.++.++.. +.+...|+..+- ...+.||+|= +.=...+..+|..+.+.+|.||+|.++..
T Consensus 92 -~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID-----lDPfGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 92 -RNLELNGLEDERIEVSNMDANVLLYSRQERFDVID-----LDPFGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp -HHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEE-----E--SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred -HhHhhccccCceEEEehhhHHHHhhhccccCCEEE-----eCCCCCccHhHHHHHHHhhcCCEEEEecc
Confidence 233334443 355555654432 2457899997 22234566799999999999999999775
No 299
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=63.83 E-value=7.9 Score=40.91 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=31.5
Q ss_pred cCceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhc
Q 010274 175 NGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS 235 (514)
Q Consensus 175 ~g~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~ 235 (514)
.|+-+.-|.-+..|......+.-.+-+.+.. +.+..+++||.|+|.++..++.
T Consensus 45 ~GDFiTApels~lFGella~~~~~~wq~~g~--------p~~~~lvEiGaG~G~l~~DiL~ 97 (370)
T COG1565 45 KGDFITAPELSQLFGELLAEQFLQLWQELGR--------PAPLKLVEIGAGRGTLASDILR 97 (370)
T ss_pred cCCeeechhHHHHHHHHHHHHHHHHHHHhcC--------CCCceEEEeCCCcChHHHHHHH
Confidence 4555555555555555444443333222221 2345799999999999888773
No 300
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=61.76 E-value=30 Score=37.01 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=48.4
Q ss_pred ChhhhhHHHHHHHHHcCCCeEEEeecCCCC--CCCCCCceEEEecccccccccch--HHHHHHHHhhCCCCeEEEEEe
Q 010274 244 APNDVHENQIQFALERGIPSTLGVLGTKRL--PYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 244 s~~dis~a~~~~A~~rg~~~~~~~~d~~~l--p~~~~sFDlV~~s~~~l~~~~d~--~~lL~el~RvLrPGG~lvis~ 317 (514)
.|.-+.+.--+..+.+...+.++..++.+. ..++++||.++-+. ...|+++. .+.++++.+.++|||++++-+
T Consensus 258 ~P~YL~~e~f~~lr~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D-~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 258 CPPYLRPENFEALRARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSD-HMDWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CChhhcHhHHHHHhcCCCeEEEEeccHHHHHHhCCCCCeeEEEecc-hhhhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 343333333333333334456666654332 14578999999777 68888765 568999999999999999855
No 301
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=60.71 E-value=18 Score=35.22 Aligned_cols=99 Identities=9% Similarity=0.041 Sum_probs=62.6
Q ss_pred CCCeEEEECCCCchHHHHHhc--------CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCC------CCCCc
Q 010274 215 NIRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY------PSRSF 280 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~--------~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~------~~~sF 280 (514)
+++.|+++|.-.|.-+.+.+. ..|+++|++-.....+.++ -..+.++.++...... -.+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 456899999988876666552 4678888876665544432 4567777776443220 11222
Q ss_pred eEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 281 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 281 DlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
--|+.....-|+....-.-|+-..++|..|-|+++.+.
T Consensus 144 ~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs 181 (237)
T COG3510 144 PKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDS 181 (237)
T ss_pred CcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecc
Confidence 23333333456666666678888899999999998664
No 302
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=60.12 E-value=4 Score=42.06 Aligned_cols=129 Identities=19% Similarity=0.195 Sum_probs=80.6
Q ss_pred cccccee--ccCceeecCCCCCCCCccHHHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHH-HHh--c-CCCcc
Q 010274 167 SDQHWMV--VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA-YLL--S-HDIIA 240 (514)
Q Consensus 167 ~~q~Wv~--~~g~~~~Fpggg~~F~~ga~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~-~La--~-~~V~g 240 (514)
+...|+. .+|-.+.|....++|.+|.-.-...+..+.- .+..|.|+=+|.|+|+. .+. + +.|.+
T Consensus 154 Gd~gWV~~v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~sc----------~~eviVDLYAGIGYFTlpflV~agAk~V~A 223 (351)
T KOG1227|consen 154 GDLGWVKHVQNGITQIWDPTKTMFSRGNIKEKKRVLNTSC----------DGEVIVDLYAGIGYFTLPFLVTAGAKTVFA 223 (351)
T ss_pred ccccceeehhcCeEEEechhhhhhhcCcHHHHHHhhhccc----------ccchhhhhhcccceEEeehhhccCccEEEE
Confidence 4566875 3566778888888999886544433333322 12579999999999998 444 2 46889
Q ss_pred ccCChhhhhHHHHHHHHHcCCC--eEEEeecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeE
Q 010274 241 MSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGY 312 (514)
Q Consensus 241 vdis~~dis~a~~~~A~~rg~~--~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~ 312 (514)
++..|-.+ ++.++.++..++. ..+..+| .+.+-++...|-|. +..++.-++-.--+.++|||.|-
T Consensus 224 ~EwNp~sv-EaLrR~~~~N~V~~r~~i~~gd-~R~~~~~~~AdrVn-----LGLlPSse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 224 CEWNPWSV-EALRRNAEANNVMDRCRITEGD-NRNPKPRLRADRVN-----LGLLPSSEQGWPTAIKALKPEGG 290 (351)
T ss_pred EecCHHHH-HHHHHHHHhcchHHHHHhhhcc-ccccCccccchhee-----eccccccccchHHHHHHhhhcCC
Confidence 99998655 4554555555432 1223333 34444556777776 33345555566667788888655
No 303
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=60.03 E-value=30 Score=33.36 Aligned_cols=88 Identities=23% Similarity=0.217 Sum_probs=49.8
Q ss_pred CCeEEEECCCC-chHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC-------CCCCCceEEE
Q 010274 216 IRNVLDVGCGV-ASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-------YPSRSFELAH 284 (514)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp-------~~~~sFDlV~ 284 (514)
..+||.+|+|. |..+..++. ..|++++. ++...+.+++.+....+ +..... ...+.+|+|+
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~-----~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAAGARVIVTDR-----SDEKLELAKELGADHVI---DYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcC-----CHHHHHHHHHhCCceec---cCCcCCHHHHHHHhcCCCCCEEE
Confidence 45899999985 555555553 34444433 33344555555432211 111111 1235799998
Q ss_pred ecccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 285 ~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
.... . ...+..+.+.|+++|.++....
T Consensus 207 ~~~~-~------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 207 DAVG-G------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred ECCC-C------HHHHHHHHHhcccCCEEEEEcc
Confidence 5431 1 1467778899999999997653
No 304
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=59.79 E-value=7.9 Score=33.65 Aligned_cols=85 Identities=22% Similarity=0.277 Sum_probs=50.8
Q ss_pred CCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCC---CC-C-CCCCCceEEEecccccccccchHHH
Q 010274 225 GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK---RL-P-YPSRSFELAHCSRCRIDWLQRDGIL 299 (514)
Q Consensus 225 GtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~---~l-p-~~~~sFDlV~~s~~~l~~~~d~~~l 299 (514)
|.|.++..++... +..+...+.++..++.+++.|....+...+.. .+ . ...+.+|+|+-... ....
T Consensus 1 ~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-------~~~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKAM--GAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-------SGDT 71 (130)
T ss_dssp HHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-------SHHH
T ss_pred ChHHHHHHHHHHc--CCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-------cHHH
Confidence 4577777777421 12333335566677888887744333221110 00 1 23357999983321 1468
Q ss_pred HHHHHhhCCCCeEEEEEeC
Q 010274 300 LLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 300 L~el~RvLrPGG~lvis~P 318 (514)
+.+...+|++||.+++..-
T Consensus 72 ~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 72 LQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp HHHHHHHEEEEEEEEEESS
T ss_pred HHHHHHHhccCCEEEEEEc
Confidence 9999999999999998653
No 305
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=59.19 E-value=35 Score=34.54 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=48.8
Q ss_pred CeEEEECCC-CchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccccc
Q 010274 217 RNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (514)
Q Consensus 217 ~~VLDIGCG-tG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d 295 (514)
.+||-+|+| .|..+..++.. .++.+.....++...+.+++.+....+.........-..+.+|+++... .
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~--~----- 234 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARA--MGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV--V----- 234 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC--C-----
Confidence 578888886 55555555543 1223322233445556665555332221111000000124689888432 1
Q ss_pred hHHHHHHHHhhCCCCeEEEEEe
Q 010274 296 DGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 296 ~~~lL~el~RvLrPGG~lvis~ 317 (514)
....+.++.+.|+++|.++...
T Consensus 235 ~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred cHHHHHHHHHhcccCCEEEEEC
Confidence 1246788899999999998754
No 306
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=58.30 E-value=30 Score=37.84 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=31.8
Q ss_pred CCCCCCC-CCceEEEecccccccccchH---HHH-HHHHhhCCCCeEEEEEeCCC
Q 010274 271 KRLPYPS-RSFELAHCSRCRIDWLQRDG---ILL-LELDRLLRPGGYFVYSSPEA 320 (514)
Q Consensus 271 ~~lp~~~-~sFDlV~~s~~~l~~~~d~~---~lL-~el~RvLrPGG~lvis~P~~ 320 (514)
..+|... +.||+|+|++. +++..+.. ... .-..+..++||++++..+..
T Consensus 265 ~~~pi~~~~~yDlvi~ah~-l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 265 QRLPIDIKNGYDLVICAHK-LHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred ccCCCCcccceeeEEeeee-eeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 4556543 45999999994 55555442 233 33456778999999877654
No 307
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=57.87 E-value=63 Score=32.76 Aligned_cols=100 Identities=17% Similarity=0.277 Sum_probs=58.1
Q ss_pred CCeEEEECCCCchHHHHHhc--------CCCccccCChhhhhHHHHHHHHHc-CCCeEEEeecC----CCCCCCCCCceE
Q 010274 216 IRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGT----KRLPYPSRSFEL 282 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~--------~~V~gvdis~~dis~a~~~~A~~r-g~~~~~~~~d~----~~lp~~~~sFDl 282 (514)
..+.+|+|.|+..=++.|.+ ...+.+|++..-+.....+.+++. +.++.-..+|. ..+| ...--+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~Rl 156 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRRL 156 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeEE
Confidence 35799999999987777663 234566666655544444444433 34444444442 2233 222233
Q ss_pred EEeccccc-ccccch-HHHHHHHHhhCCCCeEEEEEe
Q 010274 283 AHCSRCRI-DWLQRD-GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 283 V~~s~~~l-~~~~d~-~~lL~el~RvLrPGG~lvis~ 317 (514)
.+.-.+.+ ...+++ ..+|..+...|+||-+|++-+
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 32222223 333433 559999999999999999854
No 308
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=57.11 E-value=17 Score=40.29 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=54.4
Q ss_pred CCCeEEEECCCCc-hHHHHHh---cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCC------------------
Q 010274 215 NIRNVLDVGCGVA-SFGAYLL---SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR------------------ 272 (514)
Q Consensus 215 ~~~~VLDIGCGtG-~~a~~La---~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~------------------ 272 (514)
.+.+||=+|+|.- ..+..++ +..|+++|.. ....+.+++.|.. ++..+..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~-----~~rle~a~~lGa~--~v~v~~~e~g~~~~gYa~~~s~~~~~ 235 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTR-----PEVKEQVQSMGAE--FLELDFKEEGGSGDGYAKVMSEEFIA 235 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHcCCe--EEeccccccccccccceeecCHHHHH
Confidence 3478999999965 3343343 2345555443 4444566654432 22222110
Q ss_pred -----CCCCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEE
Q 010274 273 -----LPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV 314 (514)
Q Consensus 273 -----lp~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lv 314 (514)
++-.-..+|+|++.- .++..+.+.-+.+++.+.+|||+.++
T Consensus 236 ~~~~~~~e~~~~~DIVI~Ta-lipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 236 AEMELFAAQAKEVDIIITTA-LIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHhCCCCEEEECc-ccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 110124699998665 45555555568899999999999987
No 309
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=56.36 E-value=24 Score=38.31 Aligned_cols=66 Identities=21% Similarity=0.287 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC
Q 010274 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI 261 (514)
Q Consensus 193 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~ 261 (514)
.+|...|...+......+. .+ .-.|||||+|||.++.+.+.+ .|+++++-..+.. .++....+.|.
T Consensus 46 iky~~gi~~tIte~kh~~~-~g-kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d-~arkI~~kng~ 114 (636)
T KOG1501|consen 46 IKYRLGIEKTITEPKHVLD-IG-KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVD-LARKIMHKNGM 114 (636)
T ss_pred HHHHHHHHHHhcccceecc-Cc-eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHH-HHHHHHhcCCC
Confidence 4566666666654332211 22 246999999999988776532 4677766554442 22244444443
No 310
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=56.10 E-value=23 Score=26.56 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=23.6
Q ss_pred HHHHHHHHHhcCcEEEEEecceEEEeccCcc
Q 010274 331 WNAMYDLLKSMCWKIVSKKDQTVIWAKPISN 361 (514)
Q Consensus 331 ~~~l~~ll~~~Gf~~v~~~~~~~iw~Kp~~~ 361 (514)
|+++.++|+++||........-.+|.+|...
T Consensus 1 ~~el~k~L~~~G~~~~r~~GSH~~~~~~~~~ 31 (56)
T PF07927_consen 1 WRELIKLLEKAGFEEVRQKGSHHIFRHPGGR 31 (56)
T ss_dssp -HHHHHHHHHTT-EEEEEETTEEEEE-TTS-
T ss_pred ChHHHHHHHHCCCEEecCCCCEEEEEeCCCC
Confidence 6789999999999999877778888888765
No 311
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=55.53 E-value=48 Score=34.07 Aligned_cols=85 Identities=20% Similarity=0.139 Sum_probs=49.3
Q ss_pred CCeEEEECCC-CchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCG-VASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+||=.|+| .|.++..++. ..|+++ +.++...+.+++.|....+. .... ..+.+|+++-... .
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~-----~~~~~~~~~a~~~Ga~~vi~---~~~~--~~~~~d~~i~~~~-~- 233 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGATVHVM-----TRGAAARRLALALGAASAGG---AYDT--PPEPLDAAILFAP-A- 233 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCCeEEEE-----eCChHHHHHHHHhCCceecc---cccc--CcccceEEEECCC-c-
Confidence 3579988975 3344444543 233333 34455567888877643322 1111 1245887653221 1
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
...+.+..+.|++||++++..
T Consensus 234 -----~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 234 -----GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred -----HHHHHHHHHhhCCCcEEEEEe
Confidence 247888999999999998865
No 312
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=54.67 E-value=1.4e+02 Score=32.05 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=54.8
Q ss_pred eEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeE-EEeecCCCCCCCCCCceEEEecccccccccch
Q 010274 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 296 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~-~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~ 296 (514)
+||=|+=..|.++..|+...++.+ -+....+.+..+.+...+.+.. +...+. ..+++ +.+|+|+.-. ---....
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~~~-~~~~~-~~~d~vl~~~--PK~~~~l 121 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI-GDSYISELATRENLRLNGIDESSVKFLDS-TADYP-QQPGVVLIKV--PKTLALL 121 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee-ehHHHHHHHHHHHHHHcCCCcccceeecc-ccccc-CCCCEEEEEe--CCCHHHH
Confidence 599999999999999996555433 1111223333344445555432 222222 12233 4589987321 1111222
Q ss_pred HHHHHHHHhhCCCCeEEEEEe
Q 010274 297 GILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 297 ~~lL~el~RvLrPGG~lvis~ 317 (514)
+..|..+.++|.||+.++...
T Consensus 122 ~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 122 EQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred HHHHHHHHhhCCCCCEEEEEE
Confidence 557888999999999987644
No 313
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=54.52 E-value=45 Score=33.91 Aligned_cols=93 Identities=17% Similarity=0.225 Sum_probs=48.5
Q ss_pred CCeEEEECCCC-chHHHHHhcCCCccc-cCChhhhhHHHHHHHHHcCCCeEEEeec--CCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGV-ASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLG--TKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La~~~V~gv-dis~~dis~a~~~~A~~rg~~~~~~~~d--~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
..+||-.|||. |..+..++... ++ .+...+.++.+.+.+++.+....+...+ ...+....+.+|+|+....
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g--- 240 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG--- 240 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC---
Confidence 35788888764 45555555421 11 1222233344445555555432221110 1112212235899984431
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
....+.++.+.|+++|.++...
T Consensus 241 ----~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 ----APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ----CHHHHHHHHHHHhcCCEEEEEe
Confidence 1246788999999999999654
No 314
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=51.39 E-value=52 Score=34.52 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=57.5
Q ss_pred CCCeEEEECCCC-chHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCC---------CCCCCCceEEE
Q 010274 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL---------PYPSRSFELAH 284 (514)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~l---------p~~~~sFDlV~ 284 (514)
.+.+||=+|+|+ |..+...+++ +=+.++.-.|+.+..++.|++-|............. -+.+..||+.+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka-~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~ 247 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKA-MGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTF 247 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHH-cCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEE
Confidence 346899999995 4444333331 123344444667777888988776554433221111 12334588877
Q ss_pred ecccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 285 ~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
-... . +..++.....||+||.+++...
T Consensus 248 dCsG-~------~~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 248 DCSG-A------EVTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred EccC-c------hHHHHHHHHHhccCCEEEEecc
Confidence 3321 2 3467778899999999888663
No 315
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=51.31 E-value=59 Score=32.84 Aligned_cols=89 Identities=17% Similarity=0.121 Sum_probs=47.9
Q ss_pred CCeEEEECCC-CchHHHHHhcC---C-CccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCC----CCCCCCceEEEec
Q 010274 216 IRNVLDVGCG-VASFGAYLLSH---D-IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL----PYPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~---~-V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~l----p~~~~sFDlV~~s 286 (514)
..+||-+|+| .|..+..++.. . +..++ .+....+.+.+.+.. .+...+.... ....+.+|+|+..
T Consensus 160 g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~-----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 160 GDSVLVFGAGPIGLLLAQLLKLNGASRVTVAE-----PNEEKLELAKKLGAT-ETVDPSREDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEC-----CCHHHHHHHHHhCCe-EEecCCCCCHHHHHHhcCCCCcEEEEC
Confidence 3578888864 24444445532 2 22232 233444555555543 1111111110 1133569999854
Q ss_pred ccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 287 ~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
.. ....+.++.+.|+++|.++...
T Consensus 234 ~~-------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 234 TG-------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CC-------ChHHHHHHHHHHhcCCEEEEEe
Confidence 21 1357888899999999998754
No 316
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=50.81 E-value=58 Score=33.63 Aligned_cols=91 Identities=19% Similarity=0.194 Sum_probs=51.2
Q ss_pred CCeEEEECCC-CchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCC--CCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCG-VASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL--PYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~l--p~~~~sFDlV~~s~~~ 289 (514)
..+||=+|+| .|.++..++. ..|++++-+ +.++...+.+++.|... +....... ....+.||+|+-...
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~--~~~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g- 247 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRR--DPPDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATG- 247 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC--CCCHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcC-
Confidence 3578888876 3455555553 234443321 22455667777766542 11111110 001246898884431
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
....+.+..++|++||.+++..
T Consensus 248 ------~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 248 ------VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred ------CHHHHHHHHHHccCCcEEEEEe
Confidence 1237888999999999998754
No 317
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.10 E-value=47 Score=34.38 Aligned_cols=122 Identities=14% Similarity=0.232 Sum_probs=62.0
Q ss_pred EEEECCCCchHHHHHhcCC---CccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCC-CCCceEEEecc-----cc
Q 010274 219 VLDVGCGVASFGAYLLSHD---IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSR-----CR 289 (514)
Q Consensus 219 VLDIGCGtG~~a~~La~~~---V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~-~~sFDlV~~s~-----~~ 289 (514)
|+|+-||.|.++.-|..+. +.++|+. +...+.-+..... .+...|+.++... -..+|+++.+. +.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~-----~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ 74 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEID-----KYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSI 74 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCC-----HHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccch
Confidence 5899999998888876542 2344443 3333443333332 3344565554321 12489998631 00
Q ss_pred c---ccccch-HHHHHHHHhhC---CCCeEEEEEe-CCCCCCChhHHHhHHHHHHHHHhcCcEEEEEe
Q 010274 290 I---DWLQRD-GILLLELDRLL---RPGGYFVYSS-PEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (514)
Q Consensus 290 l---~~~~d~-~~lL~el~RvL---rPGG~lvis~-P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~ 349 (514)
. .-..+. ..++.++.|++ +|. .+++.- +...... ....+..+...++.+||.+....
T Consensus 75 ag~~~~~~d~r~~L~~~~~r~i~~~~P~-~~v~ENV~~l~~~~--~~~~~~~i~~~l~~~GY~v~~~~ 139 (315)
T TIGR00675 75 AGKRKGFEDTRGTLFFEIVRILKEKKPK-FFLLENVKGLVSHD--KGRTFKVIIETLEELGYKVYYKV 139 (315)
T ss_pred hcccCCCCCchhhHHHHHHHHHhhcCCC-EEEeeccHHHHhcc--cchHHHHHHHHHHhCCCEEEEEE
Confidence 0 111232 23555555544 775 333321 1111110 11346778888899999875543
No 318
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=47.35 E-value=58 Score=33.73 Aligned_cols=92 Identities=18% Similarity=0.158 Sum_probs=49.3
Q ss_pred CCeEEEECCC-CchHHHHHhcCCCcccc-CChhhhhHHHHHHHHHcCCCeEEEeecC------CCCCCCCCCceEEEecc
Q 010274 216 IRNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGT------KRLPYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~~V~gvd-is~~dis~a~~~~A~~rg~~~~~~~~d~------~~lp~~~~sFDlV~~s~ 287 (514)
..+||=.|+| .|.++..++.. .+.. +...+.++...+.+++.|....+...+. .++ .....+|+|+-..
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~--~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~-~~~~g~d~vid~~ 253 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAAL--AGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRAL-TGGFGADVVIDAV 253 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHH-hCCCCCCEEEECC
Confidence 3578888874 23444445432 1221 2222445556677777665322211110 001 1223589888332
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
. . ...+.+..+.||+||.+++..
T Consensus 254 g------~-~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 254 G------R-PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred C------C-HHHHHHHHHHhccCCEEEEEC
Confidence 1 1 246778889999999999765
No 319
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=46.63 E-value=83 Score=31.86 Aligned_cols=92 Identities=9% Similarity=0.055 Sum_probs=51.0
Q ss_pred CCeEEEECC--CCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCC-----CCCCCCceEEEeccc
Q 010274 216 IRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----PYPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGC--GtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~l-----p~~~~sFDlV~~s~~ 288 (514)
..+||=.|+ |.|.++..++... +..+.....++...+.+++.|....+...+.... ....+.+|+|+-...
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G 216 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG 216 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC
Confidence 357888884 4667777777431 2222222334455567766665332221111011 012246898884321
Q ss_pred ccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
...+.+..+.|++||+++...
T Consensus 217 --------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 217 --------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred --------HHHHHHHHHHhCcCcEEEEec
Confidence 235688899999999999754
No 320
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=46.38 E-value=4.1 Score=31.36 Aligned_cols=8 Identities=38% Similarity=1.211 Sum_probs=6.6
Q ss_pred cccccCCC
Q 010274 506 GTVHDWYA 513 (514)
Q Consensus 506 g~~hdwce 513 (514)
|-+|.|||
T Consensus 58 gqfh~wce 65 (68)
T PF13051_consen 58 GQFHEWCE 65 (68)
T ss_pred HHHHHHHh
Confidence 67888888
No 321
>PF07629 DUF1590: Protein of unknown function (DUF1590); InterPro: IPR011481 These hypothetical proteins in Rhodopirellula baltica have a conserved C-terminal region.
Probab=45.38 E-value=12 Score=24.69 Aligned_cols=19 Identities=42% Similarity=0.920 Sum_probs=16.2
Q ss_pred cCCCCCCCCCCccCCCCCC
Q 010274 120 RHCPPPERRYNCLVPPPKG 138 (514)
Q Consensus 120 r~C~~~~~~~~Clv~~P~~ 138 (514)
-||||++-.++-+.|.|+.
T Consensus 5 a~~pppeislna~fptppa 23 (32)
T PF07629_consen 5 ADCPPPEISLNARFPTPPA 23 (32)
T ss_pred CCCCCCcceeccccCCChh
Confidence 5899988888999998863
No 322
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=44.08 E-value=62 Score=32.29 Aligned_cols=89 Identities=21% Similarity=0.150 Sum_probs=49.0
Q ss_pred CCeEEEECCC-CchHHHHHhc---CC-CccccCChhhhhHHHHHHHHHcCCCeEEEeecC----CCCCCCCCCceEEEec
Q 010274 216 IRNVLDVGCG-VASFGAYLLS---HD-IIAMSLAPNDVHENQIQFALERGIPSTLGVLGT----KRLPYPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~---~~-V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~----~~lp~~~~sFDlV~~s 286 (514)
..+||=+|+| .|.++..++. .. |+++ +.++...+.+++.|....+...+. ..+. ....+|+|+-.
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~-----~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~-~~~g~d~vid~ 194 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAA-----DPSPDRRELALSFGATALAEPEVLAERQGGLQ-NGRGVDVALEF 194 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEE-----CCCHHHHHHHHHcCCcEecCchhhHHHHHHHh-CCCCCCEEEEC
Confidence 3578888875 3334444443 22 3333 344555677777665332211110 0111 22458988743
Q ss_pred ccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 287 ~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
.. ....+.++.+.|+++|.+++..
T Consensus 195 ~G-------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 195 SG-------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CC-------ChHHHHHHHHHhcCCCEEEEec
Confidence 21 1346888899999999999755
No 323
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=43.65 E-value=28 Score=37.25 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=23.9
Q ss_pred CCCCeEEEECCCCchHHHHHh---cCCCccccCC
Q 010274 214 GNIRNVLDVGCGVASFGAYLL---SHDIIAMSLA 244 (514)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~La---~~~V~gvdis 244 (514)
..+..|+|+|.|.|.++..|. +..|.++|-+
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegs 185 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGS 185 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccc
Confidence 345679999999999999997 3456666655
No 324
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=43.37 E-value=66 Score=33.20 Aligned_cols=87 Identities=14% Similarity=0.155 Sum_probs=46.9
Q ss_pred CCeEEEECCC-CchHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCG-VASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~-----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~ 289 (514)
..+||=+||| .|.++..++. ..|++++. ++..++.+++.+. .... ..+. .+..+|+|+-.-.
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~-----~~~k~~~a~~~~~--~~~~---~~~~-~~~g~d~viD~~G- 231 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGK-----HQEKLDLFSFADE--TYLI---DDIP-EDLAVDHAFECVG- 231 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeC-----cHhHHHHHhhcCc--eeeh---hhhh-hccCCcEEEECCC-
Confidence 3579999986 3334444332 23555544 3444555554222 1111 1111 1124898883321
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
. ......+.+..++||+||.+++..
T Consensus 232 -~--~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 232 -G--RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred -C--CccHHHHHHHHHhCcCCcEEEEEe
Confidence 0 112347888999999999998765
No 325
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=42.41 E-value=61 Score=32.65 Aligned_cols=124 Identities=13% Similarity=0.203 Sum_probs=66.4
Q ss_pred eEEEECCCCchHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC---CCCCCceEEEecc----
Q 010274 218 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---YPSRSFELAHCSR---- 287 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~---~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp---~~~~sFDlV~~s~---- 287 (514)
+++|+=||.|.+..-|..+ .+.++|+++. ..+.-+.... .....|+..+. ++. .+|+++.+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~-----a~~~y~~N~~--~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~ 73 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPD-----ACETYKANFP--EVICGDITEIDPSDLPK-DVDLLIGGPPCQG 73 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHH-----HHHHHHHHHT--EEEESHGGGCHHHHHHH-T-SEEEEE---TT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHH-----HHHhhhhccc--ccccccccccccccccc-cceEEEeccCCce
Confidence 6999999999888887754 3456666554 3233333322 55666766654 443 599998631
Q ss_pred -ccc---ccccch-HHH---HHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecc
Q 010274 288 -CRI---DWLQRD-GIL---LLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 351 (514)
Q Consensus 288 -~~l---~~~~d~-~~l---L~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~ 351 (514)
+.. ....|. ..+ +.++.+.++|.-.++=-++.... ......+..+.+.++++||.+....-.
T Consensus 74 fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~--~~~~~~~~~i~~~l~~lGY~v~~~vln 143 (335)
T PF00145_consen 74 FSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLS--SKNGEVFKEILEELEELGYNVQWRVLN 143 (335)
T ss_dssp TSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGT--GGGHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred EeccccccccccccchhhHHHHHHHhhccceEEEecccceeec--cccccccccccccccccceeehhcccc
Confidence 111 111222 113 44445566885544422222221 122245788889999999987654443
No 326
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=41.64 E-value=31 Score=34.40 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=36.3
Q ss_pred CeEEEECCCCchHHHHHh--cCCCccccCChhhhh--HHHHHHHHHcC-C------CeEEEeecCCC-CCCCCCCceEEE
Q 010274 217 RNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVH--ENQIQFALERG-I------PSTLGVLGTKR-LPYPSRSFELAH 284 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La--~~~V~gvdis~~dis--~a~~~~A~~rg-~------~~~~~~~d~~~-lp~~~~sFDlV~ 284 (514)
.+|||.=+|-|.-+..++ +..|++++-+|.... ..-++.+.+.. . ++.+..+|..+ +..++++||+|+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY 156 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY 156 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence 379999999998776665 678899988875321 11112222221 1 35666666443 455678999999
Q ss_pred ecc
Q 010274 285 CSR 287 (514)
Q Consensus 285 ~s~ 287 (514)
.--
T Consensus 157 ~DP 159 (234)
T PF04445_consen 157 FDP 159 (234)
T ss_dssp E--
T ss_pred ECC
Confidence 654
No 327
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=41.30 E-value=24 Score=38.75 Aligned_cols=98 Identities=13% Similarity=0.103 Sum_probs=56.2
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHc----CCC--eEEEeecCC----CCCCCCCCceEEEe
Q 010274 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIP--STLGVLGTK----RLPYPSRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~r----g~~--~~~~~~d~~----~lp~~~~sFDlV~~ 285 (514)
.-+|||.=|++|.-++..+..-.-..++...|.+++.+...++. +.. +.....|+. ..+-....||+|..
T Consensus 110 ~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvIDL 189 (525)
T KOG1253|consen 110 SLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVIDL 189 (525)
T ss_pred cchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEec
Confidence 45799999999977766663111122333334444443333222 111 122233322 22333578999982
Q ss_pred cccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 286 s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
-. ...+..+|..+.+.++.||.|.++..
T Consensus 190 ----DP-yGs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 190 ----DP-YGSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ----CC-CCCccHHHHHHHHHhhcCCEEEEEec
Confidence 22 23456799999999999999999764
No 328
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=41.27 E-value=71 Score=32.42 Aligned_cols=81 Identities=23% Similarity=0.187 Sum_probs=44.8
Q ss_pred CeEEEECCC-CchHHHHHhc---CC-CccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 217 RNVLDVGCG-VASFGAYLLS---HD-IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 217 ~~VLDIGCG-tG~~a~~La~---~~-V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
.++|=+||| .|.++..++. .. |.++| ..+..++.+.... ..+.... ....||+|+-...
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~-----~~~~rl~~a~~~~------~i~~~~~--~~~g~Dvvid~~G--- 209 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWE-----TNPRRRDGATGYE------VLDPEKD--PRRDYRAIYDASG--- 209 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeC-----CCHHHHHhhhhcc------ccChhhc--cCCCCCEEEECCC---
Confidence 468888875 4556666653 22 22333 2333344443321 1111111 2246899884432
Q ss_pred cccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 292 ~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
....+.++.+.|++||++++..
T Consensus 210 ----~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 210 ----DPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred ----CHHHHHHHHHhhhcCcEEEEEe
Confidence 1246788899999999999765
No 329
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=41.25 E-value=99 Score=32.06 Aligned_cols=92 Identities=10% Similarity=0.055 Sum_probs=51.0
Q ss_pred CCeEEEECC--CCchHHHHHhcCCCccccCChhhhhHHHHHHHH-HcCCCeEEEeecCCCC-----CCCCCCceEEEecc
Q 010274 216 IRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFAL-ERGIPSTLGVLGTKRL-----PYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGC--GtG~~a~~La~~~V~gvdis~~dis~a~~~~A~-~rg~~~~~~~~d~~~l-----p~~~~sFDlV~~s~ 287 (514)
..+||=.|+ |.|.++..++... +..+...+.++...+.++ +.|....+...+...+ ....+.+|+|+-..
T Consensus 159 g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~v 236 (348)
T PLN03154 159 GDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNV 236 (348)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECC
Confidence 357888887 3677777777431 222222233444455555 4555432221100010 01124689988432
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
. ...+.+..+.|++||.+++..
T Consensus 237 G--------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 237 G--------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred C--------HHHHHHHHHHhccCCEEEEEC
Confidence 1 246788899999999999754
No 330
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=41.14 E-value=56 Score=33.98 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=54.1
Q ss_pred CCeEEEECC--CCchHHHHHhcCC---CccccCChhhhhHHHHHHHHHcCCCeEEE--eec-CCCC--CCCCCCceEEEe
Q 010274 216 IRNVLDVGC--GVASFGAYLLSHD---IIAMSLAPNDVHENQIQFALERGIPSTLG--VLG-TKRL--PYPSRSFELAHC 285 (514)
Q Consensus 216 ~~~VLDIGC--GtG~~a~~La~~~---V~gvdis~~dis~a~~~~A~~rg~~~~~~--~~d-~~~l--p~~~~sFDlV~~ 285 (514)
..+||=.|+ |.|.++..|+... +.++ ..+.+..+.+++.|....+. ..| .+.. ......+|+|+.
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~-----~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D 217 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAV-----VSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLD 217 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEE-----ecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEE
Confidence 467998884 5778999988542 2222 12333345677777644333 111 0111 112346999985
Q ss_pred cccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 286 s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
.-. ...+.+..+.|+++|.++....
T Consensus 218 ~vG--------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 218 TVG--------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCC--------HHHHHHHHHHhccCCEEEEEec
Confidence 542 4578889999999999997553
No 331
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=40.39 E-value=1e+02 Score=30.18 Aligned_cols=91 Identities=19% Similarity=0.115 Sum_probs=47.0
Q ss_pred CCeEEEECCCC-chHHHHHhcCCCcccc-CChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 216 IRNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La~~~V~gvd-is~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
..+||=.|+|. |..+..++... ++. +...+.+....+.+++.+....+.. ...-......+|+|+... .
T Consensus 98 g~~vlI~g~g~vg~~~i~~a~~~--g~~~vi~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~d~vl~~~--~--- 168 (277)
T cd08255 98 GERVAVVGLGLVGLLAAQLAKAA--GAREVVGVDPDAARRELAEALGPADPVAA--DTADEIGGRGADVVIEAS--G--- 168 (277)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCCcEEEECCCHHHHHHHHHcCCCccccc--cchhhhcCCCCCEEEEcc--C---
Confidence 35688788753 44444444321 122 2222334445566666651111111 111111234689988432 1
Q ss_pred cchHHHHHHHHhhCCCCeEEEEEe
Q 010274 294 QRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
....+.+..+.|+++|.++...
T Consensus 169 --~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 --SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred --ChHHHHHHHHHhcCCcEEEEEe
Confidence 1246788899999999998654
No 332
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=39.95 E-value=79 Score=32.81 Aligned_cols=70 Identities=9% Similarity=0.010 Sum_probs=44.2
Q ss_pred CeEEEECCCCchHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC-----CCCCCceEEEecc
Q 010274 217 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----YPSRSFELAHCSR 287 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp-----~~~~sFDlV~~s~ 287 (514)
..++|.=+|.|..+..++. ..|+|+|.++..+..+..... ..+.++.++..+..++. ....++|.|+...
T Consensus 22 giyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~-~~~~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 22 GIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLS-DFEGRVVLIHDNFANFFEHLDELLVTKIDGILVDL 100 (305)
T ss_pred CEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHh-hcCCcEEEEeCCHHHHHHHHHhcCCCcccEEEEec
Confidence 4799999999999998885 357888887766654432221 22234566665544332 1234688887644
No 333
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=39.73 E-value=1.2e+02 Score=31.59 Aligned_cols=120 Identities=12% Similarity=0.135 Sum_probs=64.8
Q ss_pred CeEEEECCCCchHHHHHhcCC---CccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCC---CCCCceEEEeccccc
Q 010274 217 RNVLDVGCGVASFGAYLLSHD---IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY---PSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~---V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~---~~~sFDlV~~s~~~l 290 (514)
.+++|+=||.|.+..-+..+. +.++|+.+ ..++.-+.+.....+...|+..+.. ....+|+++.+.---
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~-----~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ 78 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDP-----PAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQ 78 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCH-----HHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCc
Confidence 479999999998877776543 33454444 3333333333323444455443321 111789998632100
Q ss_pred --------ccccchH----HHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcE
Q 010274 291 --------DWLQRDG----ILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (514)
Q Consensus 291 --------~~~~d~~----~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~ 344 (514)
....|+. .-+.++...++| -.|++.--...... ....|+.+.+.+++.||.
T Consensus 79 ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~--~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 79 DFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSS--KGQTFDEIKKELEELGYG 141 (328)
T ss_pred chhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhc--CchHHHHHHHHHHHcCCc
Confidence 1122221 245566667788 44444322111111 334688999999999997
No 334
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=39.51 E-value=82 Score=32.07 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=48.0
Q ss_pred CCeEEEECCC-CchHHHHHhc---CC-CccccCChhhhhHHHHHHHHHcCCCeEEEeecC--CCC-C-CCCCCceEEEec
Q 010274 216 IRNVLDVGCG-VASFGAYLLS---HD-IIAMSLAPNDVHENQIQFALERGIPSTLGVLGT--KRL-P-YPSRSFELAHCS 286 (514)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~---~~-V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~--~~l-p-~~~~sFDlV~~s 286 (514)
..+||=+|+| .|.++..++. .. |+++ +.++...+.+++.|....+...+. ..+ . .....||+|+-.
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~-----~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~ 238 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGV-----DPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIEC 238 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEE-----CCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEEC
Confidence 3578778764 2233344443 22 3333 344555677776665332211110 001 0 122469999843
Q ss_pred ccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 287 ~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
.. ....+.+..+.|+++|.+++..
T Consensus 239 ~g-------~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 239 SG-------NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CC-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 21 1235677889999999999754
No 335
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=38.44 E-value=79 Score=32.93 Aligned_cols=89 Identities=20% Similarity=0.219 Sum_probs=48.8
Q ss_pred CeEEEECCC-CchHHHHHhc---C-CCccccCChhhhhHHHHHHHHHcCCCeEEEeecC---CCC-CCCCCCceEEEecc
Q 010274 217 RNVLDVGCG-VASFGAYLLS---H-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT---KRL-PYPSRSFELAHCSR 287 (514)
Q Consensus 217 ~~VLDIGCG-tG~~a~~La~---~-~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~---~~l-p~~~~sFDlV~~s~ 287 (514)
.+||=+|+| .|.++..++. . .|+++ +.++...+.+++.|....+...+. +.+ ....+.+|+|+-..
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~-----~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~ 267 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAGASQVVAV-----DLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMA 267 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCcEEEE-----cCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECC
Confidence 467778875 2344444543 2 23444 445566677777665432221110 000 01123689888432
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
. ....+....+.|++||.+++..
T Consensus 268 G-------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 268 G-------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred C-------ChHHHHHHHHHHhcCCEEEEEc
Confidence 1 1246788889999999998754
No 336
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=36.88 E-value=47 Score=28.18 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=47.4
Q ss_pred eEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccccchH
Q 010274 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 297 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~ 297 (514)
+|| +-||+|.-+..++ ..+.+.+.++|.++.+...+..+++-....+|+|+.+- ...
T Consensus 5 ~IL-l~C~~G~sSS~l~---------------~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~p-------qi~ 61 (95)
T TIGR00853 5 NIL-LLCAAGMSTSLLV---------------NKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAP-------QVA 61 (95)
T ss_pred EEE-EECCCchhHHHHH---------------HHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECc-------hHH
Confidence 566 6699985554443 23346778889888877776555432234689998553 223
Q ss_pred HHHHHHHhhCCCCeE-EEEEeCCCC
Q 010274 298 ILLLELDRLLRPGGY-FVYSSPEAY 321 (514)
Q Consensus 298 ~lL~el~RvLrPGG~-lvis~P~~~ 321 (514)
..+.++...+.+-|. +....|..|
T Consensus 62 ~~~~~i~~~~~~~~ipv~~I~~~~Y 86 (95)
T TIGR00853 62 YMLPDLKKETDKKGIPVEVINGAQY 86 (95)
T ss_pred HHHHHHHHHhhhcCCCEEEeChhhc
Confidence 356666666655433 333334333
No 337
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=35.48 E-value=20 Score=30.66 Aligned_cols=18 Identities=11% Similarity=0.135 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhccccCC
Q 010274 22 LISVLGLVCLYYGSTSAP 39 (514)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~ 39 (514)
.+++||++||++|.+|++
T Consensus 4 w~l~Lc~~SF~~G~lft~ 21 (95)
T PF13334_consen 4 WVLLLCIASFCAGMLFTN 21 (95)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 356777778888888884
No 338
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=34.61 E-value=1.1e+02 Score=31.53 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=47.2
Q ss_pred CCeEEEECCCC-chHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecC--CCC----C-C-CCCCce--
Q 010274 216 IRNVLDVGCGV-ASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT--KRL----P-Y-PSRSFE-- 281 (514)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~--~~l----p-~-~~~sFD-- 281 (514)
..+||=+|+|. |..+..++. ..|+++ +.++...+++++.|....+...+. ..+ . + ....+|
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~-----~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~ 241 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAI-----DIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRST 241 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEE-----cCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCC
Confidence 45799999853 444455553 233333 344555677777665432221110 000 0 0 112344
Q ss_pred --EEEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 282 --LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 282 --lV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+|+-.. . ....+..+.++|++||++++..
T Consensus 242 ~d~v~d~~------g-~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 242 GWKIFECS------G-SKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred cCEEEECC------C-ChHHHHHHHHHHhcCCeEEEEC
Confidence 454111 1 1246777888999999999765
No 339
>PRK10458 DNA cytosine methylase; Provisional
Probab=33.45 E-value=5.6e+02 Score=28.28 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCCCcCCCCCCCCeEEEECCCCchHHHHHhcC
Q 010274 195 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH 236 (514)
Q Consensus 195 y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~ 236 (514)
....+.++++..... .....-+++|+=||.|.+..-+-.+
T Consensus 69 ~~~~~~~~~~~~~~~--~~~~~~~~iDLFsGiGGl~lGfe~a 108 (467)
T PRK10458 69 EFAHLQTLLPKPPAH--HPHYAFRFIDLFAGIGGIRRGFEAI 108 (467)
T ss_pred HHHHHHHhcccCccc--CcCCCceEEEeCcCccHHHHHHHHc
Confidence 334566666543221 1122358999999999888877654
No 340
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=33.43 E-value=1.3e+02 Score=32.58 Aligned_cols=84 Identities=11% Similarity=0.012 Sum_probs=48.0
Q ss_pred CCeEEEECCCC-chHHHHHh---cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccc
Q 010274 216 IRNVLDVGCGV-ASFGAYLL---SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (514)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La---~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~ 291 (514)
+++|+=+|+|. |.....++ +..|+.+|.+ +.....|...|.... . ..+. . ..+|+|+....
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d-----~~R~~~A~~~G~~~~--~--~~e~-v--~~aDVVI~atG--- 266 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVD-----PICALQAAMEGYEVM--T--MEEA-V--KEGDIFVTTTG--- 266 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC-----hhhHHHHHhcCCEEc--c--HHHH-H--cCCCEEEECCC---
Confidence 46899999995 43333333 3445555443 444456666564221 1 1111 1 24799986432
Q ss_pred cccchHHHHH-HHHhhCCCCeEEEEEeC
Q 010274 292 WLQRDGILLL-ELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 292 ~~~d~~~lL~-el~RvLrPGG~lvis~P 318 (514)
.. ..+. +..+.+|+||.++....
T Consensus 267 ---~~-~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 267 ---NK-DIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred ---CH-HHHHHHHHhcCCCCcEEEEeCC
Confidence 22 3444 45899999999988763
No 341
>PTZ00357 methyltransferase; Provisional
Probab=33.42 E-value=93 Score=35.98 Aligned_cols=104 Identities=14% Similarity=0.128 Sum_probs=57.5
Q ss_pred CeEEEECCCCchHHHHHhc--------CCCccccCChhhhhHHHHHHHH-Hc--------CCCeEEEeecCCCCCCC---
Q 010274 217 RNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFAL-ER--------GIPSTLGVLGTKRLPYP--- 276 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~--------~~V~gvdis~~dis~a~~~~A~-~r--------g~~~~~~~~d~~~lp~~--- 276 (514)
-.|+=+|+|-|-+...... ..|.+++=++....-...+... +. |..+.++..|...+..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 3589999999976554432 1345555553322111212111 11 22367888887776432
Q ss_pred --------CCCceEEEecccccccccch--HHHHHHHHhhCCC----CeEE----EEEeCCCC
Q 010274 277 --------SRSFELAHCSRCRIDWLQRD--GILLLELDRLLRP----GGYF----VYSSPEAY 321 (514)
Q Consensus 277 --------~~sFDlV~~s~~~l~~~~d~--~~lL~el~RvLrP----GG~l----vis~P~~~ 321 (514)
-+.+|+|++ ..+-.+-.+. .+.|..+.+.||+ +|.+ .+++|..|
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSY 843 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQY 843 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhccccccccCCcceecchhh
Confidence 137999995 3122222322 3588888888887 7864 24555443
No 342
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=32.63 E-value=1.4e+02 Score=34.00 Aligned_cols=58 Identities=16% Similarity=0.309 Sum_probs=41.1
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecc
Q 010274 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (514)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~ 287 (514)
+..+|| +-||+|.-+..+.. ....+..+++|.++...+.+..+.+-....+|+|+++.
T Consensus 505 k~mKIL-vaCGsGiGTStmva--------------~kIkk~Lke~GI~veV~~~~Vsev~s~~~~aDIIVtt~ 562 (602)
T PRK09548 505 KPVRIL-AVCGQGQGSSMMMK--------------MKIKKYLDKRGIPIIMDSCAVNDYKGKLETIDIIVCSK 562 (602)
T ss_pred cccEEE-EECCCCchHHHHHH--------------HHHHHHHHHcCCCeEEEEechHhCcccCCCCCEEEEcc
Confidence 445677 66999966655543 22336677888888888888877775556799999876
No 343
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=32.47 E-value=1.5e+02 Score=31.07 Aligned_cols=89 Identities=21% Similarity=0.216 Sum_probs=54.7
Q ss_pred eEEEECCCC-chHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEeecC----CCCCCCC-CCceEEEec
Q 010274 218 NVLDVGCGV-ASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGT----KRLPYPS-RSFELAHCS 286 (514)
Q Consensus 218 ~VLDIGCGt-G~~a~~La~----~~V~gvdis~~dis~a~~~~A~~rg~-~~~~~~~d~----~~lp~~~-~sFDlV~~s 286 (514)
+|+=+|||+ |.++..++. ..|+.+ |.++..++.|++.+. ...+..... ..+.... ..||+|+=.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~-----d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~ 245 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV-----DRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEA 245 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe-----CCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEEC
Confidence 899999995 666555553 344555 566777788888433 222211110 0001112 369999843
Q ss_pred ccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 287 ~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
.. ....+..+.+++||||.+++..-
T Consensus 246 ~G-------~~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 246 VG-------SPPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred CC-------CHHHHHHHHHHhcCCCEEEEEec
Confidence 32 23489999999999999998663
No 344
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=31.59 E-value=1.5e+02 Score=30.29 Aligned_cols=93 Identities=12% Similarity=0.100 Sum_probs=46.1
Q ss_pred CCeEEEECCCC-chHHHHHhcCCCcccc-CChhhhhHHHHHHHHHcCCCeEEEeecC--CCC--CCCCCCce-EEEeccc
Q 010274 216 IRNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGT--KRL--PYPSRSFE-LAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La~~~V~gvd-is~~dis~a~~~~A~~rg~~~~~~~~d~--~~l--p~~~~sFD-lV~~s~~ 288 (514)
..+||=.|+|. |.++..++... +.. +...+.++...+.+++.|....+...+. ..+ ......+| +|+-..
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~- 237 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVAL--GAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETA- 237 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECC-
Confidence 35788888742 33334444321 221 1122334445566666564322211100 000 01223577 555221
Q ss_pred ccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
. ....+.+..+.|++||.+++..
T Consensus 238 -----G-~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 238 -----G-VPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred -----C-CHHHHHHHHHHhhcCCEEEEEc
Confidence 1 1347888999999999999865
No 345
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=31.58 E-value=1.5e+02 Score=30.15 Aligned_cols=93 Identities=20% Similarity=0.189 Sum_probs=48.2
Q ss_pred CCeEEEECCCC-chHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecC---CCC--CCCCCCceEEEecccc
Q 010274 216 IRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT---KRL--PYPSRSFELAHCSRCR 289 (514)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~---~~l--p~~~~sFDlV~~s~~~ 289 (514)
..+||-.|+|. |..+..++... ++.+.....++...+..++.+....+...+. ..+ ..+...+|+++....
T Consensus 160 g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g- 236 (337)
T cd08261 160 GDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATG- 236 (337)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCC-
Confidence 35788888763 55666666431 2222111223444455555553221111100 000 013346899984421
Q ss_pred cccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 290 l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
....+.++.+.|+++|.++...
T Consensus 237 ------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 237 ------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred ------CHHHHHHHHHHHhcCCEEEEEc
Confidence 1346788999999999998654
No 346
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=31.47 E-value=1.4e+02 Score=29.83 Aligned_cols=91 Identities=10% Similarity=0.033 Sum_probs=50.6
Q ss_pred CCeEEEECC--CCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCC-----CCCCCCceEEEeccc
Q 010274 216 IRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----PYPSRSFELAHCSRC 288 (514)
Q Consensus 216 ~~~VLDIGC--GtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~l-----p~~~~sFDlV~~s~~ 288 (514)
..+||=.|+ |.|.++..++.. .++.+.....++...+.+++.|....+...+ ..+ ....+.+|+|+-...
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~--~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~-~~~~~~v~~~~~~gvd~vld~~g 220 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKI--KGCKVIGCAGSDDKVAWLKELGFDAVFNYKT-VSLEEALKEAAPDGIDCYFDNVG 220 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHcCCCEEEeCCC-ccHHHHHHHHCCCCcEEEEECCC
Confidence 357887774 456666666643 1222322233444556676666533222111 110 112246898884321
Q ss_pred ccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 289 ~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
...+.+..+.|+++|.++...
T Consensus 221 --------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 221 --------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred --------HHHHHHHHHhhccCCEEEEEc
Confidence 246788999999999998654
No 347
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=30.90 E-value=80 Score=33.10 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=57.9
Q ss_pred CCeEEEECCCC-chHHHHHh---cCCCccccCChhhhhHHHHHHHH-HcCCCeEEEeecCCCCCCCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCGV-ASFGAYLL---SHDIIAMSLAPNDVHENQIQFAL-ERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~La---~~~V~gvdis~~dis~a~~~~A~-~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l 290 (514)
+.+|.=||.|. |..++.++ ++.|+.+|++.. .++... .-+.++.........+.-.-...|+++..- ++
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~-----rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaV-LI 241 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNID-----RLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAV-LI 241 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHH-----HHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEE-Ee
Confidence 35688888884 56666666 456777766543 222222 223344443333222222224689999654 56
Q ss_pred ccccchHHHHHHHHhhCCCCeEEE
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFV 314 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lv 314 (514)
.-...|.-..+++...+|||..++
T Consensus 242 pgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 242 PGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred cCCCCceehhHHHHHhcCCCcEEE
Confidence 666777789999999999999988
No 348
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=30.79 E-value=1e+02 Score=26.04 Aligned_cols=79 Identities=14% Similarity=0.115 Sum_probs=47.2
Q ss_pred ECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccccchHHHHH
Q 010274 222 VGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLL 301 (514)
Q Consensus 222 IGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d~~~lL~ 301 (514)
+-||+|.-+..+++ ...+.+.++|.++.+...+..+..-....+|+|+++- +....+.
T Consensus 4 ~~Cg~G~sTS~~~~---------------ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~P-------qv~~~~~ 61 (96)
T cd05564 4 LVCSAGMSTSILVK---------------KMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGP-------QVRYMLD 61 (96)
T ss_pred EEcCCCchHHHHHH---------------HHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEECh-------hHHHHHH
Confidence 44888865554433 3346778888888777776555432235689998553 2334566
Q ss_pred HHHhhCCC-CeEEEEEeCCCCC
Q 010274 302 ELDRLLRP-GGYFVYSSPEAYA 322 (514)
Q Consensus 302 el~RvLrP-GG~lvis~P~~~~ 322 (514)
++.+.+.+ +--+.+..|..|.
T Consensus 62 ~i~~~~~~~~~pv~~I~~~~Y~ 83 (96)
T cd05564 62 EVKKKAAEYGIPVAVIDMMDYG 83 (96)
T ss_pred HHHHHhccCCCcEEEcChHhcc
Confidence 77765544 4445555555554
No 349
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=30.07 E-value=61 Score=30.56 Aligned_cols=31 Identities=16% Similarity=0.087 Sum_probs=21.6
Q ss_pred CCeEEEECCCCchHHHHHh--cCCCccccCChh
Q 010274 216 IRNVLDVGCGVASFGAYLL--SHDIIAMSLAPN 246 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La--~~~V~gvdis~~ 246 (514)
+..|||.=||+|+.+.+.. ++..+|+|+++.
T Consensus 192 gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~ 224 (231)
T PF01555_consen 192 GDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEE 224 (231)
T ss_dssp T-EEEETT-TTTHHHHHHHHTT-EEEEEESSHH
T ss_pred ceeeehhhhccChHHHHHHHcCCeEEEEeCCHH
Confidence 3589999999998776654 567788877654
No 350
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=29.77 E-value=1.4e+02 Score=30.15 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=24.1
Q ss_pred CCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
+.+|+|+.... ....+.++.+.|+++|.++...
T Consensus 235 ~~~d~vld~~g-------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 235 RGVDCVIEAVG-------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CCCcEEEEccC-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 56999884321 1247888999999999998654
No 351
>PLN02740 Alcohol dehydrogenase-like
Probab=29.64 E-value=1.5e+02 Score=31.01 Aligned_cols=90 Identities=18% Similarity=0.115 Sum_probs=48.3
Q ss_pred CCeEEEECCC-CchHHHHHhc---C-CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCC-CC-----CCCCCCceEEE
Q 010274 216 IRNVLDVGCG-VASFGAYLLS---H-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK-RL-----PYPSRSFELAH 284 (514)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~---~-~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~-~l-----p~~~~sFDlV~ 284 (514)
..+||=+|+| .|.++..++. . .|+++ +.++...+.+++.|....+...+.. .+ ....+.+|+|+
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~-----~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvi 273 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGV-----DINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSF 273 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEE-----cCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEE
Confidence 3578888875 2333344443 2 24444 3445566777776654322211100 00 01122689988
Q ss_pred ecccccccccchHHHHHHHHhhCCCC-eEEEEEe
Q 010274 285 CSRCRIDWLQRDGILLLELDRLLRPG-GYFVYSS 317 (514)
Q Consensus 285 ~s~~~l~~~~d~~~lL~el~RvLrPG-G~lvis~ 317 (514)
-... ....+.+..+.+++| |.+++..
T Consensus 274 d~~G-------~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 274 ECAG-------NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred ECCC-------ChHHHHHHHHhhhcCCCEEEEEc
Confidence 4331 124677888899997 9888754
No 352
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=29.14 E-value=1e+02 Score=32.16 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=23.0
Q ss_pred CceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 279 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 279 sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
.+|+|+-... ....+.+..+.|++||.++...
T Consensus 247 ~~D~vid~~g-------~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 247 TMDYIIDTVS-------AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CCCEEEECCC-------CHHHHHHHHHHhcCCcEEEEeC
Confidence 4888874321 1236788899999999999764
No 353
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=28.81 E-value=3.7e+02 Score=27.06 Aligned_cols=86 Identities=22% Similarity=0.206 Sum_probs=42.2
Q ss_pred CeEEEeecC-CCCC-CCCCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHH
Q 010274 262 PSTLGVLGT-KRLP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLK 339 (514)
Q Consensus 262 ~~~~~~~d~-~~lp-~~~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~ 339 (514)
++.++.+.. +.+| .+...+-+++.-. .+-......|..++..|.|||+++|-+.. . +.-. +.+.+..+
T Consensus 158 ~v~~vkG~F~dTLp~~p~~~IAll~lD~---DlYesT~~aLe~lyprl~~GGiIi~DDY~---~-~gcr---~AvdeF~~ 227 (248)
T PF05711_consen 158 NVRFVKGWFPDTLPDAPIERIALLHLDC---DLYESTKDALEFLYPRLSPGGIIIFDDYG---H-PGCR---KAVDEFRA 227 (248)
T ss_dssp TEEEEES-HHHHCCC-TT--EEEEEE------SHHHHHHHHHHHGGGEEEEEEEEESSTT---T-HHHH---HHHHHHHH
T ss_pred cEEEECCcchhhhccCCCccEEEEEEec---cchHHHHHHHHHHHhhcCCCeEEEEeCCC---C-hHHH---HHHHHHHH
Confidence 467776663 2344 2334444444221 12233356899999999999999995522 2 2222 34455666
Q ss_pred hcCcEE--EEEecceEEEec
Q 010274 340 SMCWKI--VSKKDQTVIWAK 357 (514)
Q Consensus 340 ~~Gf~~--v~~~~~~~iw~K 357 (514)
+.|... .......+.|+|
T Consensus 228 ~~gi~~~l~~id~~~v~w~k 247 (248)
T PF05711_consen 228 EHGITDPLHPIDWTGVYWRK 247 (248)
T ss_dssp HTT--S--EE-SSS-EEEE-
T ss_pred HcCCCCccEEecCceEEEec
Confidence 666543 222222345665
No 354
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=28.73 E-value=2e+02 Score=29.27 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=24.4
Q ss_pred CCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 277 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 277 ~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
...||+|+-... ....+.+..+.|+++|.++...
T Consensus 232 ~~~~d~vld~~g-------~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 232 GKGPDVVIECTG-------AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCEEEECCC-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 356999984321 1236888899999999998754
No 355
>PRK11524 putative methyltransferase; Provisional
Probab=28.52 E-value=1.3e+02 Score=30.58 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=25.3
Q ss_pred CCeEEEECCCCchHHHHHh--cCCCccccCChhhh
Q 010274 216 IRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDV 248 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La--~~~V~gvdis~~di 248 (514)
+..|||-=||+|+.+.+.. +++.+|+|+++.-.
T Consensus 209 GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~ 243 (284)
T PRK11524 209 GDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYI 243 (284)
T ss_pred CCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHH
Confidence 4689999999998766544 67889998876433
No 356
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=28.27 E-value=2.1e+02 Score=25.87 Aligned_cols=73 Identities=11% Similarity=-0.059 Sum_probs=48.1
Q ss_pred CCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecceEEE
Q 010274 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIW 355 (514)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~~~iw 355 (514)
...|+|+.-. . .--.+....|-.+.+.|..+|.+++.+|..-....-. -.++.+.+..+|+...........|
T Consensus 44 dvvD~vllWw-R-~~DgDL~D~LvDa~~~L~d~G~IWvltPK~gr~g~V~---~~~I~eaA~taGL~~t~~~~v~~dW 116 (127)
T PF11253_consen 44 DVVDVVLLWW-R-DDDGDLVDALVDARTNLADDGVIWVLTPKAGRPGHVE---PSDIREAAPTAGLVQTKSCAVGDDW 116 (127)
T ss_pred ccccEEEEEE-E-CCcchHHHHHHHHHhhhcCCCEEEEEccCCCCCCCCC---HHHHHHHHhhcCCeeeeeeccCCCc
Confidence 5678877432 1 1112445688889999999999999998653321111 2368889999999877665554444
No 357
>PRK13699 putative methylase; Provisional
Probab=27.70 E-value=2.1e+02 Score=28.15 Aligned_cols=33 Identities=24% Similarity=0.099 Sum_probs=25.7
Q ss_pred CCeEEEECCCCchHHHHHh--cCCCccccCChhhh
Q 010274 216 IRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDV 248 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La--~~~V~gvdis~~di 248 (514)
+..|||-=||+|+.+.... ++..+|+|+++.-.
T Consensus 164 g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~ 198 (227)
T PRK13699 164 NAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYH 198 (227)
T ss_pred CCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHH
Confidence 3579999999998776654 57888998877544
No 358
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=27.19 E-value=2e+02 Score=29.33 Aligned_cols=92 Identities=10% Similarity=0.071 Sum_probs=49.5
Q ss_pred CCeEEEECC--CCchHHHHHhcCCCccccCChhhhhHHHHHHHHH-cCCCeEEEeecCCCC-----CCCCCCceEEEecc
Q 010274 216 IRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLGTKRL-----PYPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGC--GtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~-rg~~~~~~~~d~~~l-----p~~~~sFDlV~~s~ 287 (514)
+.+||=.|+ |.|.++..++... ++.+.....+....+.+++ .|....+...+.... ....+.+|+|+-..
T Consensus 152 g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~ 229 (338)
T cd08295 152 GETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNV 229 (338)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECC
Confidence 357888886 4566666666431 2222222333444566655 554322211110000 01124689888432
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
. ...+.+..+.|+++|.++...
T Consensus 230 g--------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 230 G--------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred C--------HHHHHHHHHHhccCcEEEEec
Confidence 1 246788999999999998654
No 359
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=27.14 E-value=1.3e+02 Score=32.71 Aligned_cols=77 Identities=13% Similarity=0.157 Sum_probs=49.1
Q ss_pred CCCeEEEECCC-Cch-HHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEeccccccc
Q 010274 215 NIRNVLDVGCG-VAS-FGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (514)
Q Consensus 215 ~~~~VLDIGCG-tG~-~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~ 292 (514)
+.++||=||.| .|. .+.+|++.++..+-+.......+. +.|.+-+. ... ...+++-.-..+|+|+++.+..++
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~-~La~~~~~--~~~--~l~el~~~l~~~DvVissTsa~~~ 251 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAE-ELAKKLGA--EAV--ALEELLEALAEADVVISSTSAPHP 251 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHH-HHHHHhCC--eee--cHHHHHHhhhhCCEEEEecCCCcc
Confidence 34689999999 774 455667777777777766665555 67776662 222 223333222469999998876666
Q ss_pred ccch
Q 010274 293 LQRD 296 (514)
Q Consensus 293 ~~d~ 296 (514)
+-..
T Consensus 252 ii~~ 255 (414)
T COG0373 252 IITR 255 (414)
T ss_pred ccCH
Confidence 5443
No 360
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=27.01 E-value=2.2e+02 Score=28.89 Aligned_cols=92 Identities=18% Similarity=0.244 Sum_probs=46.4
Q ss_pred CeEEEECCCC-chHHHHHhcCCCcccc-CChhhhhHHHHHHHHHcCCCeEEEeecC--CCC-C-CCCCCceEEEeccccc
Q 010274 217 RNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGT--KRL-P-YPSRSFELAHCSRCRI 290 (514)
Q Consensus 217 ~~VLDIGCGt-G~~a~~La~~~V~gvd-is~~dis~a~~~~A~~rg~~~~~~~~d~--~~l-p-~~~~sFDlV~~s~~~l 290 (514)
.+||-.|+|. |.++..++... ++. +.....+....+...+.+....+...+. ..+ . .....||+|+...
T Consensus 161 ~~vlI~g~g~~g~~~~~lA~~~--G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~~--- 235 (343)
T cd08236 161 DTVVVIGAGTIGLLAIQWLKIL--GAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAA--- 235 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEECC---
Confidence 5788888654 44555555321 222 2222223334455554443211111000 000 1 1224599998432
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
.....+..+.+.|+++|.++...
T Consensus 236 ----g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 236 ----GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred ----CCHHHHHHHHHHhhcCCEEEEEc
Confidence 11347788999999999998755
No 361
>PLN02827 Alcohol dehydrogenase-like
Probab=26.90 E-value=1.8e+02 Score=30.61 Aligned_cols=90 Identities=16% Similarity=0.071 Sum_probs=47.4
Q ss_pred CCeEEEECCC-CchHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEeecC-CCC-----CCCCCCceEEE
Q 010274 216 IRNVLDVGCG-VASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRL-----PYPSRSFELAH 284 (514)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~-~~l-----p~~~~sFDlV~ 284 (514)
..+||=+|+| .|.++..++.. .|+++ +.++...+.+++.|....+...+. ... ....+.+|+|+
T Consensus 194 g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~-----~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vi 268 (378)
T PLN02827 194 GSSVVIFGLGTVGLSVAQGAKLRGASQIIGV-----DINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSF 268 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEE-----CCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEE
Confidence 4578888864 23333444431 23333 334455677777775432211110 000 01123689887
Q ss_pred ecccccccccchHHHHHHHHhhCCCC-eEEEEEe
Q 010274 285 CSRCRIDWLQRDGILLLELDRLLRPG-GYFVYSS 317 (514)
Q Consensus 285 ~s~~~l~~~~d~~~lL~el~RvLrPG-G~lvis~ 317 (514)
-... ....+.+..++|++| |.+++..
T Consensus 269 d~~G-------~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 269 ECVG-------DTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred ECCC-------ChHHHHHHHHhhccCCCEEEEEC
Confidence 4321 123677888899999 9998754
No 362
>COG4093 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.37 E-value=52 Score=34.04 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=26.2
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHhccccC
Q 010274 3 QKSEQQIRTSKQLTYVLLGLISVLGLVCLYYGSTSA 38 (514)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (514)
-..+++.++|||++.+++.++++.++ |.+++|-
T Consensus 4 sa~a~~~~~rkr~~wl~i~ivv~~g~---ySaGWFy 36 (338)
T COG4093 4 SAKAPQSATRKRLFWLVIAIVVLIGA---YSAGWFY 36 (338)
T ss_pred cccCCCCccccchhHHHHHHHHHHHH---hcchHhh
Confidence 34566677899999999988888875 8788776
No 363
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=26.35 E-value=1.1e+02 Score=25.81 Aligned_cols=99 Identities=12% Similarity=0.089 Sum_probs=54.8
Q ss_pred CCCchHHHHHhc----C--CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC----CCCCCceEEEecccccccc
Q 010274 224 CGVASFGAYLLS----H--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP----YPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 224 CGtG~~a~~La~----~--~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp----~~~~sFDlV~~s~~~l~~~ 293 (514)
||.|.++..+++ . .|+.+| ..+...+.+++.+ ..+..+|..+.. ..-...|.|++... .
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid-----~d~~~~~~~~~~~--~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~ 72 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVID-----RDPERVEELREEG--VEVIYGDATDPEVLERAGIEKADAVVILTD----D 72 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEE-----SSHHHHHHHHHTT--SEEEES-TTSHHHHHHTTGGCESEEEEESS----S
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEE-----CCcHHHHHHHhcc--cccccccchhhhHHhhcCccccCEEEEccC----C
Confidence 667778777763 2 345554 4444556667777 445556644321 12246788875542 1
Q ss_pred cchHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEE
Q 010274 294 QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~ 345 (514)
......+....|-+-|...++..... ++..+.++++|...
T Consensus 73 d~~n~~~~~~~r~~~~~~~ii~~~~~------------~~~~~~l~~~g~d~ 112 (116)
T PF02254_consen 73 DEENLLIALLARELNPDIRIIARVND------------PENAELLRQAGADH 112 (116)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEESS------------HHHHHHHHHTT-SE
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEECC------------HHHHHHHHHCCcCE
Confidence 12233566677888888888875532 23356667777544
No 364
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=26.24 E-value=1.8e+02 Score=29.51 Aligned_cols=87 Identities=6% Similarity=0.083 Sum_probs=48.1
Q ss_pred CeEEEECC--CCchHHHHHhcC----CCccccCChhhhhHHHHHHHHH-cCCCeEEEeecCCCC-----CCCCCCceEEE
Q 010274 217 RNVLDVGC--GVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLGTKRL-----PYPSRSFELAH 284 (514)
Q Consensus 217 ~~VLDIGC--GtG~~a~~La~~----~V~gvdis~~dis~a~~~~A~~-rg~~~~~~~~d~~~l-----p~~~~sFDlV~ 284 (514)
.+||=.|+ |.|.++..++.. .|+++ ..++...+.+++ .|....+...+ ..+ ....+.+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~-----~~s~~~~~~~~~~lGa~~vi~~~~-~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGI-----CGSDEKCQLLKSELGFDAAINYKT-DNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEE-----cCCHHHHHHHHHhcCCcEEEECCC-CCHHHHHHHHCCCCceEEE
Confidence 57888886 466777767642 23333 333444455544 45433222111 110 01124699998
Q ss_pred ecccccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 285 ~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
.... ...+.+..+.|+++|.++...
T Consensus 230 d~~g--------~~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 230 DNVG--------GEISDTVISQMNENSHIILCG 254 (345)
T ss_pred ECCC--------cHHHHHHHHHhccCCEEEEEe
Confidence 4321 123578889999999999754
No 365
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=25.59 E-value=2.2e+02 Score=24.67 Aligned_cols=82 Identities=13% Similarity=0.231 Sum_probs=50.2
Q ss_pred eEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCC--CCCCceEEEecccccccccc
Q 010274 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY--PSRSFELAHCSRCRIDWLQR 295 (514)
Q Consensus 218 ~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~--~~~sFDlV~~s~~~l~~~~d 295 (514)
+|| +-||.|.-+..+++ .+.+.++++|.++.+...+..+++- ....||+|++.. +
T Consensus 3 kIL-lvCg~G~STSlla~---------------k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~P-------Q 59 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAK---------------KTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSP-------Q 59 (104)
T ss_pred EEE-EECCCchHHHHHHH---------------HHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEECh-------H
Confidence 355 56999875554443 2346778888888777666555432 234689998553 2
Q ss_pred hHHHHHHHHhhCCCCeE-EEEEeCCCCC
Q 010274 296 DGILLLELDRLLRPGGY-FVYSSPEAYA 322 (514)
Q Consensus 296 ~~~lL~el~RvLrPGG~-lvis~P~~~~ 322 (514)
..-.+.++...+.+.|. +.+..+..|.
T Consensus 60 i~~~~~~i~~~~~~~~ipv~~I~~~~Y~ 87 (104)
T PRK09590 60 TKMYFKQFEEAGAKVGKPVVQIPPQAYI 87 (104)
T ss_pred HHHHHHHHHHHhhhcCCCEEEeCHHHcC
Confidence 33457777777766554 5555555554
No 366
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=25.43 E-value=1.5e+02 Score=29.60 Aligned_cols=52 Identities=29% Similarity=0.485 Sum_probs=39.6
Q ss_pred hHHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhHHHHHHHHHhcCcEEEEEecceEEEeccCc
Q 010274 296 DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPIS 360 (514)
Q Consensus 296 ~~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~~~l~~ll~~~Gf~~v~~~~~~~iw~Kp~~ 360 (514)
....+.++.|+|+++|.+++..+.. ....+...+++.||... ...+|.|+..
T Consensus 78 ~~~~~~~~~rvl~~~~~~~v~~~~~---------~~~~~~~~~~~~gf~~~----~~iiw~k~~~ 129 (302)
T COG0863 78 LLQWLAEQKRVLKPGGSLYVIDPFS---------NLARIEDIAKKLGFEIL----GKIIWKKPSP 129 (302)
T ss_pred HHHHHHHhhheecCCCEEEEECCch---------hhhHHHHHHHhCCCeEe----eeEEEeCCCC
Confidence 3567899999999999999877542 23456677888999877 3568888865
No 367
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=24.90 E-value=2.3e+02 Score=28.98 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=47.9
Q ss_pred CCeEEEECCC-CchHHHHHhcCCCcccc-CChhhhhHHHHHHHHHcCCCeEEEeecCCCC-----C-CCCCCceEEEecc
Q 010274 216 IRNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRL-----P-YPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~~V~gvd-is~~dis~a~~~~A~~rg~~~~~~~~d~~~l-----p-~~~~sFDlV~~s~ 287 (514)
..+||=.|+| .|..+..++... +.. +...+..+...+.+++.|....+...+ ..+ . .....+|+|+...
T Consensus 167 g~~vlI~g~g~iG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~-~~~~~~i~~~~~~~~~d~vld~~ 243 (351)
T cd08285 167 GDTVAVFGIGPVGLMAVAGARLR--GAGRIIAVGSRPNRVELAKEYGATDIVDYKN-GDVVEQILKLTGGKGVDAVIIAG 243 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHcCCceEecCCC-CCHHHHHHHHhCCCCCcEEEECC
Confidence 3578888765 334444445321 221 222233444556666666432221111 110 1 1234689988432
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
. ....+.++.+.|+++|+++...
T Consensus 244 g-------~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 244 G-------GQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred C-------CHHHHHHHHHHhhcCCEEEEec
Confidence 1 1247889999999999998643
No 368
>PF14881 Tubulin_3: Tubulin domain
Probab=24.56 E-value=48 Score=31.61 Aligned_cols=29 Identities=31% Similarity=0.669 Sum_probs=23.1
Q ss_pred cccccccchhHHhhhc--------CCCc-eeeeeccCC
Q 010274 463 VMDMNSNLGGFAAALK--------DKDV-WVMNVAPVR 491 (514)
Q Consensus 463 vmdm~a~~ggfaaal~--------~~~~-wvmnvvp~~ 491 (514)
+.|+.-++||||+.++ ++++ |+.++-+..
T Consensus 80 ~~d~d~gwgGfas~~Le~L~DEy~k~~i~~~~~~~~~~ 117 (180)
T PF14881_consen 80 LTDVDDGWGGFASSLLEHLRDEYPKKPIIWVWGLRDPS 117 (180)
T ss_pred EecCCCchHhHHHHHHHHHHHHcCCCceEEeecCCCcc
Confidence 7889999999999996 5564 988775544
No 369
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.35 E-value=4e+02 Score=25.62 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=30.9
Q ss_pred CCCCCceEEEecccccccc-----------cchHHHHHHHHhhCCCCeEEEEEe
Q 010274 275 YPSRSFELAHCSRCRIDWL-----------QRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 275 ~~~~sFDlV~~s~~~l~~~-----------~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
..++..|+|+.+.|+.... .+.+.++..+..+|+|+-.+++.+
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~t 99 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNT 99 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEec
Confidence 3456789999887644322 234668888888899999888865
No 370
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=24.27 E-value=2.3e+02 Score=21.97 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=15.6
Q ss_pred HHHHHHHhhCCCCeEEEEE
Q 010274 298 ILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 298 ~lL~el~RvLrPGG~lvis 316 (514)
.-++++.+.++.||.+++.
T Consensus 51 ~~~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 51 EEAEALLEWVEAGNTLVLA 69 (70)
T ss_pred HHHHHHHHHHHcCCEEEEe
Confidence 4677888888899999985
No 371
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=24.27 E-value=3e+02 Score=29.24 Aligned_cols=98 Identities=14% Similarity=0.062 Sum_probs=48.9
Q ss_pred CeEEEECCC-CchHHHHHhcCCCcccc-CChhhhhHHHHHHHHHcCCCeEEEeecCCC----C-C-CCCCCceEEEeccc
Q 010274 217 RNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKR----L-P-YPSRSFELAHCSRC 288 (514)
Q Consensus 217 ~~VLDIGCG-tG~~a~~La~~~V~gvd-is~~dis~a~~~~A~~rg~~~~~~~~d~~~----l-p-~~~~sFDlV~~s~~ 288 (514)
.+||=.|+| .|.++..++... +.. +...+.+....+.+++.|... +....... + . .....+|+|+-...
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~--Ga~~vi~~d~~~~r~~~a~~~Ga~~-v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G 263 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLL--GAAVVIVGDLNPARLAQARSFGCET-VDLSKDATLPEQIEQILGEPEVDCAVDCVG 263 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCHHHHHHHHHcCCeE-EecCCcccHHHHHHHHcCCCCCcEEEECCC
Confidence 456657764 233334444321 111 111234455667788777642 21110001 0 0 12246899984332
Q ss_pred ccc-------cccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 289 RID-------WLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 289 ~l~-------~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
.-. ...+....+.+..+++|+||.+++..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 264 FEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred CccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 100 00112347899999999999999855
No 372
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=24.20 E-value=1.4e+02 Score=25.22 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=28.1
Q ss_pred EEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecc
Q 010274 219 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (514)
Q Consensus 219 VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~ 287 (514)
|| +-||+|.-+..++. ....+...++|.++.+...+..+++-....+|+|++..
T Consensus 5 IL-vvCgsG~~TS~m~~--------------~ki~~~l~~~gi~~~v~~~~~~e~~~~~~~~D~iv~t~ 58 (94)
T PRK10310 5 II-VACGGAVATSTMAA--------------EEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTA 58 (94)
T ss_pred EE-EECCCchhHHHHHH--------------HHHHHHHHHCCCeEEEEEecHHHHhhhcCCCCEEEECC
Confidence 44 45888876555432 12224445566666655555444432114567777553
No 373
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=23.50 E-value=60 Score=32.23 Aligned_cols=19 Identities=16% Similarity=0.496 Sum_probs=15.7
Q ss_pred CeEEEECCCCchHHHHHhc
Q 010274 217 RNVLDVGCGVASFGAYLLS 235 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~ 235 (514)
-+|+|+|+|+|.++..+++
T Consensus 20 ~~ivE~GaG~G~La~diL~ 38 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILR 38 (252)
T ss_dssp EEEEEES-TTSHHHHHHHH
T ss_pred cEEEEECCCchHHHHHHHH
Confidence 5799999999999988873
No 374
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=21.94 E-value=2.2e+02 Score=24.25 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=33.2
Q ss_pred CCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecc
Q 010274 223 GCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (514)
Q Consensus 223 GCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~ 287 (514)
-||+|.-+..+.. ....+..+++|.+....+......+-.....|+++++.
T Consensus 7 aCG~GvgSS~~ik--------------~kve~~l~~~gi~~~~~~~~v~~~~~~~~~aDiiv~s~ 57 (93)
T COG3414 7 ACGNGVGSSTMIK--------------MKVEEVLKELGIDVDVEQCAVDEIKALTDGADIIVTST 57 (93)
T ss_pred ECCCCccHHHHHH--------------HHHHHHHHHcCCCceeeeEEecccccCCCcccEEEEeh
Confidence 4888865554432 33346677888876666666555554446789999875
No 375
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=21.62 E-value=3.5e+02 Score=27.44 Aligned_cols=35 Identities=11% Similarity=-0.018 Sum_probs=25.1
Q ss_pred CCCceEEEecccccccccchHHHHHHHHhhCCCCeEEEEEeC
Q 010274 277 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (514)
Q Consensus 277 ~~sFDlV~~s~~~l~~~~d~~~lL~el~RvLrPGG~lvis~P 318 (514)
.+.||+|+-.. . ....+.++.+.|+++|.++....
T Consensus 228 ~~~~d~vld~~--g-----~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 228 GEGVDVFLEMS--G-----APKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred CCCCCEEEECC--C-----CHHHHHHHHHhhcCCCEEEEEcc
Confidence 35689998432 1 13468889999999999987653
No 376
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=21.53 E-value=2.8e+02 Score=28.87 Aligned_cols=90 Identities=12% Similarity=0.062 Sum_probs=48.6
Q ss_pred CCeEEEECCC-CchHHHHHhc---C-CCccccCChhhhhHHHHHHHHHcCCCeEEEeecCC-C----C-CCCCCCceEEE
Q 010274 216 IRNVLDVGCG-VASFGAYLLS---H-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK-R----L-PYPSRSFELAH 284 (514)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~---~-~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~-~----l-p~~~~sFDlV~ 284 (514)
..+||=+|+| .|.++..++. . .|+++ +.++...+.+++.|....+...+.. . + ....+.+|+|+
T Consensus 186 g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~-----~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vi 260 (368)
T TIGR02818 186 GDTVAVFGLGGIGLSVIQGARMAKASRIIAI-----DINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSF 260 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEE-----cCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEE
Confidence 3578888875 2444455553 2 34444 4445566777776654332211100 0 0 01113588887
Q ss_pred ecccccccccchHHHHHHHHhhCCCC-eEEEEEe
Q 010274 285 CSRCRIDWLQRDGILLLELDRLLRPG-GYFVYSS 317 (514)
Q Consensus 285 ~s~~~l~~~~d~~~lL~el~RvLrPG-G~lvis~ 317 (514)
-.-. . ...+.+..+.|++| |.+++..
T Consensus 261 d~~G------~-~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 261 ECIG------N-VNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred ECCC------C-HHHHHHHHHHhhcCCCeEEEEe
Confidence 3321 1 34678888999986 9988654
No 377
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=20.99 E-value=3.7e+02 Score=26.95 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=44.3
Q ss_pred CeEEEECCCCchHHHH---HhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccc
Q 010274 217 RNVLDVGCGVASFGAY---LLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~---La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~ 293 (514)
.+||=.||| .++.. ++.. .++.+.....+....+.+++.|....+ +.... +.+.+|+++...
T Consensus 169 ~~vlV~g~g--~vg~~~~~la~~--~g~~v~~~~~~~~~~~~~~~~g~~~~~---~~~~~--~~~~vD~vi~~~------ 233 (329)
T cd08298 169 QRLGLYGFG--ASAHLALQIARY--QGAEVFAFTRSGEHQELARELGADWAG---DSDDL--PPEPLDAAIIFA------ 233 (329)
T ss_pred CEEEEECCc--HHHHHHHHHHHH--CCCeEEEEcCChHHHHHHHHhCCcEEe---ccCcc--CCCcccEEEEcC------
Confidence 456667654 44443 3322 122322223333455666555542211 11111 234688877321
Q ss_pred cchHHHHHHHHhhCCCCeEEEEEe
Q 010274 294 QRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 294 ~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
. ....+.++.+.|+++|.++...
T Consensus 234 ~-~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 234 P-VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred C-cHHHHHHHHHHhhcCCEEEEEc
Confidence 1 1247899999999999999754
No 378
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=20.87 E-value=1.6e+02 Score=30.68 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=36.1
Q ss_pred CeEEEeecCCCCCCCC-------CCceEEEecccccc----cccchHHHHHHHHhhCCCCeEEEEEe-CCCCC
Q 010274 262 PSTLGVLGTKRLPYPS-------RSFELAHCSRCRID----WLQRDGILLLELDRLLRPGGYFVYSS-PEAYA 322 (514)
Q Consensus 262 ~~~~~~~d~~~lp~~~-------~sFDlV~~s~~~l~----~~~d~~~lL~el~RvLrPGG~lvis~-P~~~~ 322 (514)
++.|.+.|+..+..++ .+.|+|...+.+-+ .+.....+|..+...++||-+|+|++ |..|.
T Consensus 176 ~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGSYS 248 (315)
T PF11312_consen 176 NVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGSYS 248 (315)
T ss_pred eeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCCch
Confidence 3566666665554321 23456553331111 12233559999999999999999876 45554
No 379
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=20.82 E-value=87 Score=34.87 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=19.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhccccCC
Q 010274 13 KQLTYVLLGLISVLGLVCLYYGSTSAP 39 (514)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (514)
|.+.+++++++++.++++||.|.+|++
T Consensus 478 K~LWIsvAliVLLAaLlSfLtg~~fq~ 504 (538)
T PF05781_consen 478 KVLWISVALIVLLAALLSFLTGLFFQR 504 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 445566667777777778888888883
No 380
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=20.76 E-value=1.7e+02 Score=30.70 Aligned_cols=90 Identities=16% Similarity=0.113 Sum_probs=45.3
Q ss_pred CCeEEEECCC-CchHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCC-CCCCCceEEEeccccc
Q 010274 216 IRNVLDVGCG-VASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-YPSRSFELAHCSRCRI 290 (514)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~---~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp-~~~~sFDlV~~s~~~l 290 (514)
..+||=.|+| .|.++..++. ..|++++.+. +...+.+++.|....+...+...+. .. +.+|+|+-...
T Consensus 179 g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~----~~~~~~a~~lGa~~~i~~~~~~~v~~~~-~~~D~vid~~G-- 251 (375)
T PLN02178 179 GKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS----EKEREAIDRLGADSFLVTTDSQKMKEAV-GTMDFIIDTVS-- 251 (375)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh----HHhHHHHHhCCCcEEEcCcCHHHHHHhh-CCCcEEEECCC--
Confidence 3578878874 3344444443 2333433221 2223555555653222111100000 11 24788873321
Q ss_pred ccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 291 DWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 291 ~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
....+.+..+.|++||.++...
T Consensus 252 -----~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 252 -----AEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred -----cHHHHHHHHHhhcCCCEEEEEc
Confidence 1236788889999999998754
No 381
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=20.75 E-value=1.2e+02 Score=33.44 Aligned_cols=100 Identities=15% Similarity=0.213 Sum_probs=60.9
Q ss_pred CCeEEEECCCCchHHHHHh----cCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecC----CCC---CCCCCCceEEE
Q 010274 216 IRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT----KRL---PYPSRSFELAH 284 (514)
Q Consensus 216 ~~~VLDIGCGtG~~a~~La----~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~----~~l---p~~~~sFDlV~ 284 (514)
...+|=||=|.|.+...+. ...+++++++|.++..+.-.+-............|. .++ .-.+..||++.
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~ 375 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM 375 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence 3468889988898888776 357899999998876665444332222222222221 111 12456799887
Q ss_pred ec---ccccccc--cch----HHHHHHHHhhCCCCeEEEEE
Q 010274 285 CS---RCRIDWL--QRD----GILLLELDRLLRPGGYFVYS 316 (514)
Q Consensus 285 ~s---~~~l~~~--~d~----~~lL~el~RvLrPGG~lvis 316 (514)
.- -. .|-. +.+ ..+|..+..+|.|-|.+++-
T Consensus 376 ~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 376 VDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred EECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence 52 11 1111 111 44889999999999999874
No 382
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=20.60 E-value=5.6e+02 Score=26.86 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=50.8
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEeecCCCCCCCCCCceEEEecccccccccc-
Q 010274 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR- 295 (514)
Q Consensus 217 ~~VLDIGCGtG~~a~~La~~~V~gvdis~~dis~a~~~~A~~rg~~~~~~~~d~~~lp~~~~sFDlV~~s~~~l~~~~d- 295 (514)
++||=+|--...+...|....+.+.. ...+..+ ......+..+.|.. +.. .+. ...||+|+. .+...
T Consensus 21 ~~~l~~~~~~d~~~~~l~~~~~~~~~---~~~~~~~-~~~~~~~~~~~f~~-~~~-~~~-~~~~d~~~~-----~~pk~k 88 (342)
T PRK09489 21 RRVLFAGDLQDDLPAQLDAASVRVHT---QQFHHWQ-VLSRQMGDNARFSL-VAT-AED-VADCDTLIY-----YWPKNK 88 (342)
T ss_pred CcEEEEcCcchhhHHhhhccceEEeh---hhhHHHH-HHHhhcCCceEecc-ccC-Ccc-CCCCCEEEE-----ECCCCH
Confidence 46898888777777777633222221 1222221 22222233344431 111 111 257999873 23322
Q ss_pred --hHHHHHHHHhhCCCCeEEEEEeCC
Q 010274 296 --DGILLLELDRLLRPGGYFVYSSPE 319 (514)
Q Consensus 296 --~~~lL~el~RvLrPGG~lvis~P~ 319 (514)
.+..|..+.+.|+|||.+++....
T Consensus 89 ~~~~~~l~~~~~~l~~g~~i~~~G~~ 114 (342)
T PRK09489 89 QEAQFQLMNLLSLLPVGTDIFVVGEN 114 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEEec
Confidence 245899999999999999998754
No 383
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=20.29 E-value=2.4e+02 Score=26.68 Aligned_cols=47 Identities=26% Similarity=0.319 Sum_probs=27.9
Q ss_pred HHHHHHHHhhCCCCeEEEEEeCCCCCCChhHHHhH--------HHHHHHHHhcCcEEEE
Q 010274 297 GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIW--------NAMYDLLKSMCWKIVS 347 (514)
Q Consensus 297 ~~lL~el~RvLrPGG~lvis~P~~~~~~~e~~~~~--------~~l~~ll~~~Gf~~v~ 347 (514)
..++.-+++.|.|||.+++. |..+.+..... ..+...+.++||...+
T Consensus 66 ~~l~~~~~~~l~pg~~lfVe----Y~~D~eT~~~L~~G~pp~~TrLG~~Ll~~GFtwfK 120 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVE----YVEDRETRRQLQRGVPPAETRLGFSLLKAGFTWFK 120 (170)
T ss_dssp HHHHHHHHTT----SEEEEE-----TT-HHHHHHHHTT--GGGSHHHHHHHTTT--EEE
T ss_pred HHHHHHHHHHhhhcCeEEEE----EecCHHHHHHHHcCCCcccchhHHHHHhCCcEEEe
Confidence 55889999999999999984 33444443322 2677889999997664
No 384
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=20.19 E-value=3.7e+02 Score=27.66 Aligned_cols=92 Identities=16% Similarity=0.109 Sum_probs=47.0
Q ss_pred CCeEEEECCC-CchHHHHHhcCCCcccc-CChhhhhHHHHHHHHHcCCCeEEEeecCCC----C-C-CCCCCceEEEecc
Q 010274 216 IRNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKR----L-P-YPSRSFELAHCSR 287 (514)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~La~~~V~gvd-is~~dis~a~~~~A~~rg~~~~~~~~d~~~----l-p-~~~~sFDlV~~s~ 287 (514)
..+||-.|+| .|..+..++.. .++. +.....++...+.+.+.+... +....... + . .+.+.+|+++...
T Consensus 183 g~~vLI~g~g~vG~a~i~lak~--~G~~~Vi~~~~~~~~~~~~~~~g~~~-vv~~~~~~~~~~l~~~~~~~~vd~vld~~ 259 (363)
T cd08279 183 GDTVAVIGCGGVGLNAIQGARI--AGASRIIAVDPVPEKLELARRFGATH-TVNASEDDAVEAVRDLTDGRGADYAFEAV 259 (363)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHHHhCCeE-EeCCCCccHHHHHHHHcCCCCCCEEEEcC
Confidence 3578877764 34444555532 1222 222233444445555545421 11111000 0 0 1235689888432
Q ss_pred cccccccchHHHHHHHHhhCCCCeEEEEEe
Q 010274 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (514)
Q Consensus 288 ~~l~~~~d~~~lL~el~RvLrPGG~lvis~ 317 (514)
. ....+.++.+.|+++|+++...
T Consensus 260 ~-------~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 260 G-------RAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred C-------ChHHHHHHHHHhhcCCeEEEEe
Confidence 1 1246789999999999998754
Done!