Query 010275
Match_columns 514
No_of_seqs 297 out of 2065
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 22:37:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00165 aspartyl protease; Pr 100.0 1.5E-64 3.2E-69 531.9 41.9 368 29-514 63-447 (482)
2 cd05490 Cathepsin_D2 Cathepsin 100.0 3.8E-62 8.2E-67 496.4 37.7 324 84-512 1-325 (325)
3 cd06098 phytepsin Phytepsin, a 100.0 2.5E-62 5.4E-67 495.6 35.5 317 80-512 1-317 (317)
4 cd05487 renin_like Renin stimu 100.0 3.2E-61 6.9E-66 489.5 38.8 325 82-513 1-326 (326)
5 cd05486 Cathespin_E Cathepsin 100.0 1.2E-61 2.6E-66 490.7 35.4 316 90-512 1-316 (316)
6 cd05485 Cathepsin_D_like Cathe 100.0 1.6E-60 3.5E-65 484.7 38.2 327 80-512 2-329 (329)
7 cd05478 pepsin_A Pepsin A, asp 100.0 3.4E-60 7.4E-65 480.2 36.8 316 81-512 2-317 (317)
8 cd05488 Proteinase_A_fungi Fun 100.0 5.9E-60 1.3E-64 479.0 37.1 320 80-512 1-320 (320)
9 cd05477 gastricsin Gastricsins 100.0 1.1E-59 2.4E-64 476.8 38.2 317 87-513 1-318 (318)
10 PTZ00147 plasmepsin-1; Provisi 100.0 9.8E-59 2.1E-63 484.3 41.4 323 76-514 126-450 (453)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.1E-57 2.3E-62 475.5 41.1 323 76-514 125-449 (450)
12 PF00026 Asp: Eukaryotic aspar 100.0 2.3E-55 4.9E-60 444.7 28.6 316 89-513 1-317 (317)
13 cd06097 Aspergillopepsin_like 100.0 2.2E-51 4.7E-56 408.3 30.1 272 90-512 1-278 (278)
14 cd05473 beta_secretase_like Be 100.0 1.7E-50 3.6E-55 416.9 31.8 316 88-514 2-346 (364)
15 PLN03146 aspartyl protease fam 100.0 6.1E-50 1.3E-54 419.0 34.6 307 86-513 81-426 (431)
16 KOG1339 Aspartyl protease [Pos 100.0 4.9E-50 1.1E-54 417.3 31.7 320 78-513 35-392 (398)
17 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.1E-49 2.4E-54 404.8 30.1 283 88-514 2-324 (326)
18 cd05474 SAP_like SAPs, pepsin- 100.0 7.4E-49 1.6E-53 393.5 32.7 278 89-513 2-295 (295)
19 cd05472 cnd41_like Chloroplast 100.0 3.3E-48 7.1E-53 389.6 29.3 287 89-513 1-297 (299)
20 cd05471 pepsin_like Pepsin-lik 100.0 6.2E-46 1.4E-50 369.3 33.4 227 90-318 1-231 (283)
21 cd05475 nucellin_like Nucellin 100.0 2.7E-45 5.9E-50 363.4 28.1 258 88-514 1-272 (273)
22 cd05476 pepsin_A_like_plant Ch 100.0 2.7E-45 5.8E-50 362.0 27.7 248 89-514 1-264 (265)
23 cd05489 xylanase_inhibitor_I_l 100.0 8.8E-42 1.9E-46 349.9 27.6 314 96-513 2-361 (362)
24 cd05470 pepsin_retropepsin_lik 99.9 7.3E-22 1.6E-26 167.9 12.9 108 92-200 1-109 (109)
25 PF14543 TAXi_N: Xylanase inhi 99.9 6.4E-21 1.4E-25 174.0 16.7 136 90-248 1-164 (164)
26 PF14541 TAXi_C: Xylanase inhi 99.8 1.1E-18 2.4E-23 159.0 13.1 153 268-512 1-161 (161)
27 cd05483 retropepsin_like_bacte 98.0 1.9E-05 4.1E-10 64.6 6.4 92 89-202 2-94 (96)
28 PF05184 SapB_1: Saposin-like 97.5 0.00013 2.8E-09 49.3 3.4 37 387-423 3-39 (39)
29 TIGR02281 clan_AA_DTGA clan AA 97.3 0.0013 2.8E-08 56.8 8.7 101 80-202 2-103 (121)
30 PF13650 Asp_protease_2: Aspar 96.6 0.011 2.3E-07 47.5 7.8 88 92-201 1-89 (90)
31 PF11925 DUF3443: Protein of u 96.3 0.05 1.1E-06 54.9 11.6 194 91-306 25-272 (370)
32 cd05479 RP_DDI RP_DDI; retrope 95.4 0.085 1.9E-06 45.6 8.2 91 86-201 13-106 (124)
33 PF03489 SapB_2: Saposin-like 95.2 0.01 2.2E-07 39.0 1.3 34 323-356 2-35 (35)
34 COG3577 Predicted aspartyl pro 94.2 0.34 7.3E-06 44.9 9.2 92 75-181 91-183 (215)
35 cd05479 RP_DDI RP_DDI; retrope 94.1 0.27 5.9E-06 42.4 8.2 26 485-510 99-124 (124)
36 cd05484 retropepsin_like_LTR_2 93.5 0.26 5.7E-06 39.8 6.5 75 90-182 1-78 (91)
37 PF08284 RVP_2: Retroviral asp 93.1 0.25 5.4E-06 43.4 6.1 27 486-512 105-131 (135)
38 TIGR02281 clan_AA_DTGA clan AA 92.3 2 4.3E-05 36.9 10.6 37 265-311 8-44 (121)
39 cd06095 RP_RTVL_H_like Retrope 90.3 1.3 2.8E-05 35.4 7.1 81 93-202 2-84 (86)
40 TIGR03698 clan_AA_DTGF clan AA 86.6 4.3 9.2E-05 34.0 8.0 24 485-508 84-107 (107)
41 smart00741 SapB Saposin (B) Do 85.7 0.87 1.9E-05 34.8 3.2 37 387-423 2-38 (76)
42 PF13975 gag-asp_proteas: gag- 83.6 1.6 3.5E-05 33.6 3.8 34 86-121 5-38 (72)
43 KOG1340 Prosaposin [Lipid tran 82.4 2.2 4.8E-05 40.4 4.9 87 324-422 78-165 (218)
44 PF07172 GRP: Glycine rich pro 81.3 1.2 2.6E-05 36.5 2.3 23 1-23 1-23 (95)
45 PF13650 Asp_protease_2: Aspar 76.3 2.7 5.9E-05 33.1 3.1 29 276-311 3-31 (90)
46 PF12384 Peptidase_A2B: Ty3 tr 72.8 11 0.00024 33.9 6.1 27 289-315 45-71 (177)
47 PF13975 gag-asp_proteas: gag- 72.2 5.4 0.00012 30.7 3.7 29 276-311 13-41 (72)
48 PF00077 RVP: Retroviral aspar 72.1 4.7 0.0001 32.9 3.5 29 91-121 7-35 (100)
49 cd05484 retropepsin_like_LTR_2 69.9 5.3 0.00011 32.1 3.3 30 275-311 4-33 (91)
50 cd05483 retropepsin_like_bacte 65.1 7.9 0.00017 30.8 3.5 29 276-311 7-35 (96)
51 smart00741 SapB Saposin (B) Do 63.9 4.2 9.1E-05 30.8 1.5 37 320-356 40-76 (76)
52 cd06095 RP_RTVL_H_like Retrope 60.4 8.7 0.00019 30.5 2.8 29 276-311 3-31 (86)
53 PF07966 A1_Propeptide: A1 Pro 60.4 7 0.00015 24.4 1.7 24 30-53 1-24 (29)
54 cd05482 HIV_retropepsin_like R 57.9 12 0.00026 30.1 3.2 26 93-120 2-27 (87)
55 KOG1340 Prosaposin [Lipid tran 56.5 9.1 0.0002 36.3 2.6 47 313-359 160-206 (218)
56 PF09668 Asp_protease: Asparty 54.9 21 0.00045 30.8 4.4 79 87-181 22-102 (124)
57 PF02160 Peptidase_A3: Caulifl 53.0 24 0.00052 33.1 4.7 50 438-510 66-115 (201)
58 PF00077 RVP: Retroviral aspar 44.4 15 0.00033 29.7 1.9 26 276-308 10-35 (100)
59 PF08284 RVP_2: Retroviral asp 42.2 1.2E+02 0.0026 26.3 7.4 28 89-118 21-48 (135)
60 cd05481 retropepsin_like_LTR_1 41.2 24 0.00052 28.6 2.6 22 291-312 12-33 (93)
61 PF09668 Asp_protease: Asparty 37.2 34 0.00073 29.5 2.9 30 275-311 28-57 (124)
62 PF12384 Peptidase_A2B: Ty3 tr 37.1 42 0.00092 30.3 3.5 29 91-119 34-62 (177)
63 COG5550 Predicted aspartyl pro 35.0 24 0.00052 30.2 1.6 20 292-311 29-49 (125)
64 COG3577 Predicted aspartyl pro 30.6 57 0.0012 30.6 3.4 36 266-311 103-138 (215)
65 PRK02710 plastocyanin; Provisi 29.4 67 0.0015 27.2 3.5 35 1-35 1-35 (119)
66 TIGR03698 clan_AA_DTGF clan AA 27.9 62 0.0013 26.9 3.0 66 92-173 2-73 (107)
67 cd06094 RP_Saci_like RP_Saci_l 24.6 2.9E+02 0.0063 22.3 6.1 22 101-122 8-29 (89)
No 1
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.5e-64 Score=531.86 Aligned_cols=368 Identities=38% Similarity=0.689 Sum_probs=303.8
Q ss_pred ceEEEeeeeccCChhhhhhhchhhhhhHHHHhhhcccCCCCCCCCCCCceeEeceeccCceEEEEEEecCCCCeeEEEec
Q 010275 29 GLVRIGLKKMKLDPNNRLAARLESEHGEALRASVKKYGFPNNLRDSEDTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFD 108 (514)
Q Consensus 29 ~~~~ipl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lD 108 (514)
.++|+||+|.+..++...+.+...-..+.+ ..|++...+.. ........||.|+.|.+|+++|+||||||++.|++|
T Consensus 63 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~D 139 (482)
T PTZ00165 63 PAHKVELHRFALLKKKRKKNSEKGYISRVL--TKHKYLETKDP-NGLQYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFD 139 (482)
T ss_pred heEEeeeEEcchHHHhhhhHHHHHhhhhhh--hcccccccccc-ccccccceecccccCCeEEEEEEeCCCCceEEEEEe
Confidence 689999999876665433321100000010 01111111100 001346789999999999999999999999999999
Q ss_pred CCCCceeEeCCCCCCCcccCCCCcccCCCCCceee--cCe---EEEEEecCCeEEEEEEEEEEEEeeeeecCceEEEEEe
Q 010275 109 TGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKK--NGE---SASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATR 183 (514)
Q Consensus 109 TGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~--~~~---~~~~~Yg~G~~~G~~~~D~v~ig~~~i~~~~fg~~~~ 183 (514)
|||+++||++..|. ...|..++.|||++|+||+. .+. .+.+.||+|++.|.+++|+|++|+..++++.||+++.
T Consensus 140 TGSS~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~~ 218 (482)
T PTZ00165 140 TGSSNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLAIE 218 (482)
T ss_pred CCCCCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEEEe
Confidence 99999999999996 45799999999999999998 655 6789999999999999999999999999999999998
Q ss_pred cCCccccccccceeeeccccccc---cCCCcchHHHHHHcCCCCCCeEEEEecCCCCCCCCceEEECCCCCCCc--ccce
Q 010275 184 EPGVTFMVAKFDGILGLGFQEIS---VGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHY--KGKH 258 (514)
Q Consensus 184 ~~~~~~~~~~~~GIlGLg~~~~s---~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg~D~~~~--~g~l 258 (514)
.++..|....+|||||||++..+ .....|++++|++||+|++++||+||.++.+ .+|+|+|||+|+.++ .|++
T Consensus 219 ~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~--~~G~l~fGGiD~~~~~~~g~i 296 (482)
T PTZ00165 219 ESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLN--QPGSISFGSADPKYTLEGHKI 296 (482)
T ss_pred ccccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCC--CCCEEEeCCcCHHHcCCCCce
Confidence 76655666788999999999873 3457889999999999999999999986532 379999999999776 5789
Q ss_pred eEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCCcccccchhHHHhhhhHHHH
Q 010275 259 TYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILD 338 (514)
Q Consensus 259 ~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~ 338 (514)
.|+|+.+..||+|.+++|+++++.+..+.....|++||||+++++|.+++++|.+++++.
T Consensus 297 ~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------------------- 356 (482)
T PTZ00165 297 WWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE-------------------- 356 (482)
T ss_pred EEEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc--------------------
Confidence 999999999999999999999988776667789999999999999999999999887543
Q ss_pred HhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHHHHHhhhchhHHHHHHHhhhh
Q 010275 339 LLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNEL 418 (514)
Q Consensus 339 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (514)
T Consensus 357 -------------------------------------------------------------------------------- 356 (482)
T PTZ00165 357 -------------------------------------------------------------------------------- 356 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCceeeeCCCCCCCCeEEEEECCE-----EEEeCcccceEeec--CCCcceEEEceEeccCCCCCCCcEEeCH
Q 010275 419 CDRMPSPMGESAVDCGKLSSMPIVSFTIGGK-----VFDLSPEEYILKVG--EGPEAQCISGFTAMDVPPPRGPLWILGD 491 (514)
Q Consensus 419 c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~-----~~~l~~~~y~~~~~--~~~~~~C~~~i~~~~~~~~~~~~~iLG~ 491 (514)
.+|+.+..+|+|+|+|+|. +|.|+|++|+++.. ......|.++|+.++.+.+.++.||||+
T Consensus 357 ------------~~C~~~~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd 424 (482)
T PTZ00165 357 ------------EDCSNKDSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGN 424 (482)
T ss_pred ------------ccccccccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEch
Confidence 2677777899999999864 99999999999752 3345689999999887666678999999
Q ss_pred hhhcceEEEEeCCCCeEEEEEcC
Q 010275 492 VFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 492 ~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
+|||+||+|||.+++|||||+++
T Consensus 425 ~Flr~yy~VFD~~n~rIGfA~a~ 447 (482)
T PTZ00165 425 NFIRKYYSIFDRDHMMVGLVPAK 447 (482)
T ss_pred hhheeEEEEEeCCCCEEEEEeec
Confidence 99999999999999999999975
No 2
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=3.8e-62 Score=496.35 Aligned_cols=324 Identities=55% Similarity=1.052 Sum_probs=285.4
Q ss_pred eccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCC-CcccCCCCcccCCCCCceeecCeEEEEEecCCeEEEEEE
Q 010275 84 NYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYF-SVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFS 162 (514)
Q Consensus 84 n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~~G~~~ 162 (514)
|+.|.+|+++|.||||||++.|++||||+++||++..|.. ...|..++.|+|++|+||+..++.+.+.|++|++.|.++
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~ 80 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLS 80 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEe
Confidence 4568999999999999999999999999999999999963 247888899999999999999999999999999999999
Q ss_pred EEEEEEeeeeecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCCCCCCCCc
Q 010275 163 YDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGG 242 (514)
Q Consensus 163 ~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~~~G 242 (514)
+|+|++|+..++++.||+++...+..+.....+||||||++..+.....|++++|++||.|++++||+||.+..+....|
T Consensus 81 ~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G 160 (325)
T cd05490 81 QDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGG 160 (325)
T ss_pred eeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCC
Confidence 99999999999999999998776544555678999999999888777789999999999999999999998654333479
Q ss_pred eEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCCccc
Q 010275 243 EIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVS 322 (514)
Q Consensus 243 ~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~~~~ 322 (514)
+|+|||+|+++|.|++.|+|+.+..+|.|.+++|+|++... .+.....++|||||+++++|.+++++|.+++++.
T Consensus 161 ~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~-~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~---- 235 (325)
T cd05490 161 ELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV---- 235 (325)
T ss_pred EEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeee-ecCCCCEEEECCCCccccCCHHHHHHHHHHhCCc----
Confidence 99999999999999999999988899999999999987643 2345678999999999999999999999988543
Q ss_pred ccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHHHHHh
Q 010275 323 QQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQL 402 (514)
Q Consensus 323 ~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (514)
T Consensus 236 -------------------------------------------------------------------------------- 235 (325)
T cd05490 236 -------------------------------------------------------------------------------- 235 (325)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEeccCCCC
Q 010275 403 QQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPP 482 (514)
Q Consensus 403 ~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~~~ 482 (514)
+...+.|.++|+....+|+|+|+|+|+.|+|+|++|+++........|++.|+.++..+.
T Consensus 236 --------------------~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~ 295 (325)
T cd05490 236 --------------------PLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPP 295 (325)
T ss_pred --------------------cccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeEEEECCCCCC
Confidence 112356889999888899999999999999999999997654445689999988776555
Q ss_pred CCCcEEeCHhhhcceEEEEeCCCCeEEEEE
Q 010275 483 RGPLWILGDVFMGRYHTVFDFGELRVGFAE 512 (514)
Q Consensus 483 ~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 512 (514)
..+.||||++|||++|+|||++++|||||+
T Consensus 296 ~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 296 AGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 567899999999999999999999999996
No 3
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2.5e-62 Score=495.59 Aligned_cols=317 Identities=84% Similarity=1.458 Sum_probs=283.3
Q ss_pred EeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCeEEE
Q 010275 80 VALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAG 159 (514)
Q Consensus 80 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~~G 159 (514)
+||.|+.+.+|+++|.||||||++.|++||||+++||++..|.....|..++.|+|++|+|++..+..+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G 80 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISG 80 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEE
Confidence 57899999999999999999999999999999999999999964568998999999999999999999999999999999
Q ss_pred EEEEEEEEEeeeeecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCCCCCC
Q 010275 160 FFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQED 239 (514)
Q Consensus 160 ~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~ 239 (514)
.+++|+|++|+..++++.||++....+..+....++||||||++..+.....|++.+|++||+|++++||+||.+..+..
T Consensus 81 ~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~ 160 (317)
T cd06098 81 FFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEE 160 (317)
T ss_pred EEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCC
Confidence 99999999999999999999998766555556678999999999887777788999999999999999999998754333
Q ss_pred CCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCC
Q 010275 240 EGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASG 319 (514)
Q Consensus 240 ~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~ 319 (514)
..|+|+|||+|+++|.|++.|+|+...++|.|.+++|+|+++.+..+.....++|||||+++++|+++++++.
T Consensus 161 ~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~------- 233 (317)
T cd06098 161 EGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN------- 233 (317)
T ss_pred CCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh-------
Confidence 5799999999999999999999999889999999999999988766666788999999999999998765431
Q ss_pred cccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHHH
Q 010275 320 VVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQ 399 (514)
Q Consensus 320 ~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (514)
T Consensus 234 -------------------------------------------------------------------------------- 233 (317)
T cd06098 234 -------------------------------------------------------------------------------- 233 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEeccC
Q 010275 400 NQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDV 479 (514)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~ 479 (514)
+.++|+....+|+|+|+|+|+.|+|+|++|+++........|+++|+..+.
T Consensus 234 -----------------------------~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~ 284 (317)
T cd06098 234 -----------------------------SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDV 284 (317)
T ss_pred -----------------------------ccCCccccccCCcEEEEECCEEEEEChHHeEEeecCCCCCEEeceEEECCC
Confidence 346888777899999999999999999999998665555689999988775
Q ss_pred CCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEE
Q 010275 480 PPPRGPLWILGDVFMGRYHTVFDFGELRVGFAE 512 (514)
Q Consensus 480 ~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 512 (514)
....++.||||++|||++|+|||++++|||||+
T Consensus 285 ~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 285 PPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 444556899999999999999999999999995
No 4
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=3.2e-61 Score=489.53 Aligned_cols=325 Identities=46% Similarity=0.926 Sum_probs=287.5
Q ss_pred ceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCC-CcccCCCCcccCCCCCceeecCeEEEEEecCCeEEEE
Q 010275 82 LKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYF-SVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGF 160 (514)
Q Consensus 82 l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~~G~ 160 (514)
|.|+.+..|+++|+||||+|+++|++||||+++||++..|.. ...|..++.|+|++|+|++..++.+.+.|++|++.|.
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~ 80 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGF 80 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEE
Confidence 467889999999999999999999999999999999999963 2478888999999999999999999999999999999
Q ss_pred EEEEEEEEeeeeecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCCCCCCC
Q 010275 161 FSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDE 240 (514)
Q Consensus 161 ~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~~ 240 (514)
+++|+|++|+..+. +.||++.......+.....+||||||++..+.....|++++|++||.|++++||+||.+.++...
T Consensus 81 ~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~ 159 (326)
T cd05487 81 LSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSL 159 (326)
T ss_pred EeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCC
Confidence 99999999998885 78999987654445556789999999988776677899999999999999999999987643345
Q ss_pred CceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCCc
Q 010275 241 GGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGV 320 (514)
Q Consensus 241 ~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~~ 320 (514)
.|+|+|||+|+++|.|++.|+|+...++|+|.+++++|++..+. +..+..++|||||+++++|.++++++++++++.
T Consensus 160 ~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~-- 236 (326)
T cd05487 160 GGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGAK-- 236 (326)
T ss_pred CcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCCc--
Confidence 79999999999999999999999989999999999999998763 345678999999999999999999999988654
Q ss_pred ccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHHHH
Q 010275 321 VSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQN 400 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
T Consensus 237 -------------------------------------------------------------------------------- 236 (326)
T cd05487 237 -------------------------------------------------------------------------------- 236 (326)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEeccCC
Q 010275 401 QLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVP 480 (514)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~ 480 (514)
...+.|.+||+....+|+|+|+|+|+.++|++++|+++..+.....|+++|+..+..
T Consensus 237 -----------------------~~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~ 293 (326)
T cd05487 237 -----------------------ERLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIP 293 (326)
T ss_pred -----------------------ccCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCC
Confidence 013568899998888999999999999999999999986655567899999987755
Q ss_pred CCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEc
Q 010275 481 PPRGPLWILGDVFMGRYHTVFDFGELRVGFAEA 513 (514)
Q Consensus 481 ~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~ 513 (514)
++.++.||||++|||++|+|||++++|||||+|
T Consensus 294 ~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 294 PPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 455578999999999999999999999999986
No 5
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.2e-61 Score=490.70 Aligned_cols=316 Identities=50% Similarity=0.956 Sum_probs=280.5
Q ss_pred EEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCeEEEEEEEEEEEEe
Q 010275 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVKVG 169 (514)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~~G~~~~D~v~ig 169 (514)
|+++|+||||||+++|+|||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|.+++|+|++|
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig 79 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT-SQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVE 79 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEEC
Confidence 899999999999999999999999999999996 4579889999999999999999999999999999999999999999
Q ss_pred eeeecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCCCCCCCCceEEECCC
Q 010275 170 DLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGV 249 (514)
Q Consensus 170 ~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg~ 249 (514)
+..++++.||++....+..|....++||||||++..+.....|++++|++||+|++++||+||.+.++....|+|+|||+
T Consensus 80 ~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~ 159 (316)
T cd05486 80 GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGF 159 (316)
T ss_pred CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEccc
Confidence 99999999999877655445556789999999998887777889999999999999999999987543345799999999
Q ss_pred CCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCCcccccchhHH
Q 010275 250 DPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVV 329 (514)
Q Consensus 250 D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~~~~~~c~~~~ 329 (514)
|+++|.|++.|+|+.+.++|.|.+++|+|+++.+. +.....++|||||+++++|++++++|.+.+++.
T Consensus 160 d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~----------- 227 (316)
T cd05486 160 DTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGAT----------- 227 (316)
T ss_pred CHHHcccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCc-----------
Confidence 99999999999999999999999999999998763 345678999999999999999999998887543
Q ss_pred HhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHHHHHhhhchhHH
Q 010275 330 EQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQE 409 (514)
Q Consensus 330 ~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (514)
T Consensus 228 -------------------------------------------------------------------------------- 227 (316)
T cd05486 228 -------------------------------------------------------------------------------- 227 (316)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEeccCCCCCCCcEEe
Q 010275 410 NILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWIL 489 (514)
Q Consensus 410 ~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iL 489 (514)
...+.|.++|+....+|+|+|+|+|+.++|+|++|++.........|+++|+..+..+..++.|||
T Consensus 228 --------------~~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~IL 293 (316)
T cd05486 228 --------------ATDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWIL 293 (316)
T ss_pred --------------ccCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEE
Confidence 113568899998888999999999999999999999875333456899999887654455568999
Q ss_pred CHhhhcceEEEEeCCCCeEEEEE
Q 010275 490 GDVFMGRYHTVFDFGELRVGFAE 512 (514)
Q Consensus 490 G~~fl~~~y~vfD~~~~riGfa~ 512 (514)
|++|||++|+|||.+++|||||+
T Consensus 294 Gd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 294 GDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred chHHhcceEEEEeCCCCEeeccC
Confidence 99999999999999999999996
No 6
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.6e-60 Score=484.65 Aligned_cols=327 Identities=58% Similarity=1.085 Sum_probs=289.5
Q ss_pred EeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCC-CcccCCCCcccCCCCCceeecCeEEEEEecCCeEE
Q 010275 80 VALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYF-SVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIA 158 (514)
Q Consensus 80 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~~ 158 (514)
.+|.|+.+..|+++|+||||+|++.|++||||+++||+|..|.. ...|..++.|+|++|+|++..++.|.+.|++|++.
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~ 81 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLS 81 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEE
Confidence 47899999999999999999999999999999999999999963 23688788999999999999999999999999999
Q ss_pred EEEEEEEEEEeeeeecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCCCCC
Q 010275 159 GFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQE 238 (514)
Q Consensus 159 G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~ 238 (514)
|.+++|+|++|+..++++.||++....+..+.....+||||||++..+.....|++.+|++||+|++++||+||.+.++.
T Consensus 82 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~ 161 (329)
T cd05485 82 GFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSA 161 (329)
T ss_pred EEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCC
Confidence 99999999999999999999999876554455567899999999988776778899999999999999999999875443
Q ss_pred CCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCC
Q 010275 239 DEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318 (514)
Q Consensus 239 ~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~ 318 (514)
...|+|+|||+|++++.|+++|+|+.+.++|.|.++++.+++..+ +..+..++|||||+++++|++++++|.+++++.
T Consensus 162 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~--~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~ 239 (329)
T cd05485 162 KEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEF--CSGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK 239 (329)
T ss_pred CCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeee--cCCCcEEEEccCCcceeCCHHHHHHHHHHhCCc
Confidence 357999999999999999999999998999999999999999865 345678999999999999999999999888654
Q ss_pred CcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHH
Q 010275 319 GVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWM 398 (514)
Q Consensus 319 ~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (514)
.
T Consensus 240 ~------------------------------------------------------------------------------- 240 (329)
T cd05485 240 P------------------------------------------------------------------------------- 240 (329)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEecc
Q 010275 399 QNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMD 478 (514)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~ 478 (514)
...+.|.++|+....+|+|+|+|+|++|.|+|++|+++........|+++|+..+
T Consensus 241 -------------------------~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~ 295 (329)
T cd05485 241 -------------------------IIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGID 295 (329)
T ss_pred -------------------------ccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeeeEEECc
Confidence 1124688999988889999999999999999999999876555578999898776
Q ss_pred CCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEE
Q 010275 479 VPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAE 512 (514)
Q Consensus 479 ~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 512 (514)
.++..++.||||++|||++|+|||++++|||||+
T Consensus 296 ~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 296 IPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 5555566899999999999999999999999984
No 7
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=3.4e-60 Score=480.23 Aligned_cols=316 Identities=50% Similarity=0.920 Sum_probs=281.3
Q ss_pred eceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCeEEEE
Q 010275 81 ALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGF 160 (514)
Q Consensus 81 ~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~~G~ 160 (514)
||.|+.+..|+++|.||||||++.|++||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|.
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G~ 80 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS-SQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTGI 80 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC-cccccccCcCCCCCCcceeeCCcEEEEEECCceEEEE
Confidence 789999999999999999999999999999999999999996 4578888999999999999999999999999999999
Q ss_pred EEEEEEEEeeeeecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCCCCCCC
Q 010275 161 FSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDE 240 (514)
Q Consensus 161 ~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~~ 240 (514)
+++|+|++|+..++++.||++....+..+.....+||||||++..+.....|++++|++||+|++++||+||.+..+ .
T Consensus 81 ~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~--~ 158 (317)
T cd05478 81 LGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQ--Q 158 (317)
T ss_pred EeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCC--C
Confidence 99999999999999999999987654322234579999999998877677889999999999999999999987632 3
Q ss_pred CceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCCc
Q 010275 241 GGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGV 320 (514)
Q Consensus 241 ~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~~ 320 (514)
.|+|+|||+|+++|.|++.|+|+....+|.|.++++.|+++.+. ...+..++|||||+++++|++++++|.+++++..
T Consensus 159 ~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~-~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~- 236 (317)
T cd05478 159 GSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVA-CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ- 236 (317)
T ss_pred CeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEc-cCCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc-
Confidence 79999999999999999999999988999999999999999874 3456789999999999999999999999886540
Q ss_pred ccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHHHH
Q 010275 321 VSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQN 400 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
T Consensus 237 -------------------------------------------------------------------------------- 236 (317)
T cd05478 237 -------------------------------------------------------------------------------- 236 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEeccCC
Q 010275 401 QLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVP 480 (514)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~ 480 (514)
...+.|.++|+....+|.|+|+|+|+.|+|||++|+.+. ...|++.|+..+
T Consensus 237 -----------------------~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~----~~~C~~~~~~~~-- 287 (317)
T cd05478 237 -----------------------NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD----QGSCTSGFQSMG-- 287 (317)
T ss_pred -----------------------ccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC----CCEEeEEEEeCC--
Confidence 124568899998888999999999999999999999864 368999887542
Q ss_pred CCCCCcEEeCHhhhcceEEEEeCCCCeEEEEE
Q 010275 481 PPRGPLWILGDVFMGRYHTVFDFGELRVGFAE 512 (514)
Q Consensus 481 ~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 512 (514)
..+.||||++|||++|+|||++++|||||+
T Consensus 288 --~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 288 --LGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred --CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 246799999999999999999999999996
No 8
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=5.9e-60 Score=478.99 Aligned_cols=320 Identities=50% Similarity=0.942 Sum_probs=283.9
Q ss_pred EeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCeEEE
Q 010275 80 VALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAG 159 (514)
Q Consensus 80 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~~G 159 (514)
+||.|+.+..|+++|+||||+|++.|++||||+++||+|..|. ...|..++.|++++|+|++..++.+.+.|++|+++|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G 79 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG-SIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEG 79 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC-CcccCCcceECCCCCcceeeCCCEEEEEECCceEEE
Confidence 4889999999999999999999999999999999999999996 457988899999999999999999999999999999
Q ss_pred EEEEEEEEEeeeeecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCCCCCC
Q 010275 160 FFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQED 239 (514)
Q Consensus 160 ~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~ 239 (514)
.+++|++++++..++++.|+++....+..+.....+||||||++..+.....|.+.+|++||.|++++||+||.+.. .
T Consensus 80 ~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~ 157 (320)
T cd05488 80 FVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--E 157 (320)
T ss_pred EEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--C
Confidence 99999999999999999999998765544445567999999999887666778889999999999999999999753 2
Q ss_pred CCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCC
Q 010275 240 EGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASG 319 (514)
Q Consensus 240 ~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~ 319 (514)
..|.|+|||+|++++.|++.|+|+....+|.|.+++|+|++..+.. ....++|||||+++++|++++++|.+++++..
T Consensus 158 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~--~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~ 235 (320)
T cd05488 158 DGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELEL--ENTGAAIDTGTSLIALPSDLAEMLNAEIGAKK 235 (320)
T ss_pred CCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEecc--CCCeEEEcCCcccccCCHHHHHHHHHHhCCcc
Confidence 3799999999999999999999999889999999999999987643 45679999999999999999999998886540
Q ss_pred cccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHHH
Q 010275 320 VVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQ 399 (514)
Q Consensus 320 ~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (514)
T Consensus 236 -------------------------------------------------------------------------------- 235 (320)
T cd05488 236 -------------------------------------------------------------------------------- 235 (320)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEeccC
Q 010275 400 NQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDV 479 (514)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~ 479 (514)
...+.|.+||+....+|+|+|+|+|++|+|+|++|+++. .+.|++.++..+.
T Consensus 236 ------------------------~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~----~g~C~~~~~~~~~ 287 (320)
T cd05488 236 ------------------------SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEV----SGSCISAFTGMDF 287 (320)
T ss_pred ------------------------ccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecC----CCeEEEEEEECcC
Confidence 124568899998888999999999999999999999853 2479999987664
Q ss_pred CCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEE
Q 010275 480 PPPRGPLWILGDVFMGRYHTVFDFGELRVGFAE 512 (514)
Q Consensus 480 ~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 512 (514)
+...++.||||++|||++|+|||++++|||||+
T Consensus 288 ~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 288 PEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 433456899999999999999999999999996
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.1e-59 Score=476.77 Aligned_cols=317 Identities=49% Similarity=0.948 Sum_probs=281.0
Q ss_pred CceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCeEEEEEEEEEE
Q 010275 87 DAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSV 166 (514)
Q Consensus 87 ~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~~G~~~~D~v 166 (514)
|..|+++|+||||||++.|++||||+++||++..|. ...|..++.|+|++|+|++..++.|.+.|++|++.|.+++|++
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i 79 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQ-SQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTV 79 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCC-CccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEE
Confidence 468999999999999999999999999999999997 4579988999999999999999999999999999999999999
Q ss_pred EEeeeeecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCCCCCCCCceEEE
Q 010275 167 KVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVF 246 (514)
Q Consensus 167 ~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~f 246 (514)
++|+..++++.||++....+..+.....+||||||++..+....++++++|+++|.|++++||+||.+.. ....|.|+|
T Consensus 80 ~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~f 158 (318)
T cd05477 80 TVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVF 158 (318)
T ss_pred EECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEE
Confidence 9999999999999999765544444567999999999888777789999999999999999999998752 223799999
Q ss_pred CCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCCcccccch
Q 010275 247 GGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCK 326 (514)
Q Consensus 247 Gg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~~~~~~c~ 326 (514)
||+|++++.|++.|+|+....+|.|.+++++|++..+..+..+..++|||||+++++|++++++|++.+++.
T Consensus 159 Gg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~-------- 230 (318)
T cd05477 159 GGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQ-------- 230 (318)
T ss_pred cccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCc--------
Confidence 999999999999999999889999999999999988765566778999999999999999999999988654
Q ss_pred hHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHHHHHhhhch
Q 010275 327 AVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQ 406 (514)
Q Consensus 327 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (514)
T Consensus 231 -------------------------------------------------------------------------------- 230 (318)
T cd05477 231 -------------------------------------------------------------------------------- 230 (318)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEeccCCCCCC-C
Q 010275 407 TQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRG-P 485 (514)
Q Consensus 407 ~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~-~ 485 (514)
....+.|.+||+....+|.|+|+|+|+++.|+|++|+... ...|.++|+....+...+ +
T Consensus 231 ----------------~~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~----~~~C~~~i~~~~~~~~~~~~ 290 (318)
T cd05477 231 ----------------QDQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN----NGYCTVGIEPTYLPSQNGQP 290 (318)
T ss_pred ----------------cccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC----CCeEEEEEEecccCCCCCCc
Confidence 0124568999998888999999999999999999999864 358998887654332222 5
Q ss_pred cEEeCHhhhcceEEEEeCCCCeEEEEEc
Q 010275 486 LWILGDVFMGRYHTVFDFGELRVGFAEA 513 (514)
Q Consensus 486 ~~iLG~~fl~~~y~vfD~~~~riGfa~~ 513 (514)
.||||++|||++|++||++++|||||+|
T Consensus 291 ~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 291 LWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred eEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 7999999999999999999999999986
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=9.8e-59 Score=484.28 Aligned_cols=323 Identities=35% Similarity=0.663 Sum_probs=279.6
Q ss_pred CceeEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCC
Q 010275 76 DTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTG 155 (514)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G 155 (514)
....+||.|+.+.+|+++|+||||||++.|++||||+++||+|..|. ...|..++.|||++|+||+..++.+.+.|++|
T Consensus 126 ~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~-~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~G 204 (453)
T PTZ00147 126 EFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT-TEGCETKNLYDSSKSKTYEKDGTKVEMNYVSG 204 (453)
T ss_pred CCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCC-cccccCCCccCCccCcceEECCCEEEEEeCCC
Confidence 56789999999999999999999999999999999999999999996 45798899999999999999999999999999
Q ss_pred eEEEEEEEEEEEEeeeeecCceEEEEEecCCc--cccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEec
Q 010275 156 AIAGFFSYDSVKVGDLVVKDQEFIEATREPGV--TFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLN 233 (514)
Q Consensus 156 ~~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~--~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~ 233 (514)
++.|.+++|+|++|+.+++ ..|+++....+. .+....++||||||++..+.....|++.+|++||.|++++||+||.
T Consensus 205 svsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~ 283 (453)
T PTZ00147 205 TVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLP 283 (453)
T ss_pred CEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEec
Confidence 9999999999999999988 568887755432 1334568999999999888777789999999999999999999998
Q ss_pred CCCCCCCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHH
Q 010275 234 RNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINH 313 (514)
Q Consensus 234 ~~~~~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~ 313 (514)
+... ..|.|+|||+|+++|.|++.|+|+.+..+|.|.++ +.+++.. .....++|||||+++++|+++++++.+
T Consensus 284 ~~~~--~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~----~~~~~aIiDSGTsli~lP~~~~~ai~~ 356 (453)
T PTZ00147 284 PEDK--HKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVS----SEKANVIVDSGTSVITVPTEFLNKFVE 356 (453)
T ss_pred CCCC--CCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEe----cCceeEEECCCCchhcCCHHHHHHHHH
Confidence 6432 37999999999999999999999998899999998 5777643 246789999999999999999999999
Q ss_pred HhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHH
Q 010275 314 AIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEM 393 (514)
Q Consensus 314 ~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
++++..
T Consensus 357 ~l~~~~-------------------------------------------------------------------------- 362 (453)
T PTZ00147 357 SLDVFK-------------------------------------------------------------------------- 362 (453)
T ss_pred HhCCee--------------------------------------------------------------------------
Confidence 886540
Q ss_pred HHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEc
Q 010275 394 AVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISG 473 (514)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~ 473 (514)
. ...+.|.++|+. ..+|+|+|.|+|..++|+|++|+.+..+.....|+++
T Consensus 363 ----------------------------~-~~~~~y~~~C~~-~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~~~ 412 (453)
T PTZ00147 363 ----------------------------V-PFLPLYVTTCNN-TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCMLN 412 (453)
T ss_pred ----------------------------c-CCCCeEEEeCCC-CCCCeEEEEECCEEEEECHHHheeccccCCCcEEEEE
Confidence 0 123457889986 5789999999999999999999986544445689998
Q ss_pred eEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010275 474 FTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 474 i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
|++.+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 413 i~~~~~---~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 413 IIPIDL---EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 887542 23579999999999999999999999999985
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.1e-57 Score=475.55 Aligned_cols=323 Identities=33% Similarity=0.666 Sum_probs=277.1
Q ss_pred CceeEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCC
Q 010275 76 DTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTG 155 (514)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G 155 (514)
....++|.|+.+.+|+++|.||||||++.|++||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.||+|
T Consensus 125 ~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~-~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG~G 203 (450)
T PTZ00013 125 ENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD-SIGCSIKNLYDSSKSKSYEKDGTKVDITYGSG 203 (450)
T ss_pred CCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC-ccccccCCCccCccCcccccCCcEEEEEECCc
Confidence 56678999999999999999999999999999999999999999996 45799899999999999999999999999999
Q ss_pred eEEEEEEEEEEEEeeeeecCceEEEEEecCC--ccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEec
Q 010275 156 AIAGFFSYDSVKVGDLVVKDQEFIEATREPG--VTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLN 233 (514)
Q Consensus 156 ~~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~--~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~ 233 (514)
++.|.+++|+|++|+.+++ ..|+++..... ..+....++||||||++..+.....|++.+|++||.|++++||+||.
T Consensus 204 sv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~ 282 (450)
T PTZ00013 204 TVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLP 282 (450)
T ss_pred eEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEec
Confidence 9999999999999999987 57777765432 12334567999999999887767789999999999999999999998
Q ss_pred CCCCCCCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHH
Q 010275 234 RNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINH 313 (514)
Q Consensus 234 ~~~~~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~ 313 (514)
+.+ ...|.|+|||+|+++|.|++.|+|+....+|.|.++ +.++.... ....+++||||+++++|+++++++.+
T Consensus 283 ~~~--~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~~~~i~~ 355 (450)
T PTZ00013 283 VHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEFLNKFFA 355 (450)
T ss_pred CCC--CCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccCCHHHHHHHHH
Confidence 643 237999999999999999999999998899999998 66664432 35679999999999999999999998
Q ss_pred HhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHH
Q 010275 314 AIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEM 393 (514)
Q Consensus 314 ~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
++++..
T Consensus 356 ~l~~~~-------------------------------------------------------------------------- 361 (450)
T PTZ00013 356 NLNVIK-------------------------------------------------------------------------- 361 (450)
T ss_pred HhCCee--------------------------------------------------------------------------
Confidence 886540
Q ss_pred HHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEc
Q 010275 394 AVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISG 473 (514)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~ 473 (514)
....+.|.++|+. ..+|+|+|.|+|.+++|+|++|+..........|++.
T Consensus 362 -----------------------------~~~~~~y~~~C~~-~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~~~ 411 (450)
T PTZ00013 362 -----------------------------VPFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMIT 411 (450)
T ss_pred -----------------------------cCCCCeEEeecCC-CCCCeEEEEECCEEEEECHHHheehhccCCCCeeEEE
Confidence 0123458889985 5789999999999999999999976443334689998
Q ss_pred eEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010275 474 FTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 474 i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
+.+.+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 412 i~~~~~---~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 412 MLPVDI---DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred EEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 876542 23589999999999999999999999999985
No 12
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2.3e-55 Score=444.71 Aligned_cols=316 Identities=40% Similarity=0.754 Sum_probs=280.4
Q ss_pred eEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCeEEEEEEEEEEEE
Q 010275 89 QYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVKV 168 (514)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~~G~~~~D~v~i 168 (514)
+|+++|+||||+|+++|++||||+++||++..|..+..|..+..|++++|+|++..++.+.+.|++|+++|.+++|+|++
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~i 80 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSI 80 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEee
Confidence 59999999999999999999999999999999963335788899999999999999999999999999999999999999
Q ss_pred eeeeecCceEEEEEecCCccccccccceeeeccccccccCC-CcchHHHHHHcCCCCCCeEEEEecCCCCCCCCceEEEC
Q 010275 169 GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGN-AVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFG 247 (514)
Q Consensus 169 g~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~-~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fG 247 (514)
|+..+.++.||++....+..+.....+||||||++..+... ..+++++|+++|+|++++||++|.+.. ...|.|+||
T Consensus 81 g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~G 158 (317)
T PF00026_consen 81 GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFG 158 (317)
T ss_dssp TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEES
T ss_pred eeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheee
Confidence 99999999999999865544556788999999988776554 788999999999999999999999874 347999999
Q ss_pred CCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCCcccccchh
Q 010275 248 GVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKA 327 (514)
Q Consensus 248 g~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~~~~~~c~~ 327 (514)
|+|+++|.|++.|+|+...++|.+.+++|.+++... .......++||||++++++|.++++.|++++++..
T Consensus 159 g~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~-~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~-------- 229 (317)
T PF00026_consen 159 GYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESV-FSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSY-------- 229 (317)
T ss_dssp SEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEE-EEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEE--------
T ss_pred ccccccccCceeccCccccccccccccccccccccc-ccccceeeecccccccccccchhhHHHHhhhcccc--------
Confidence 999999999999999999999999999999999832 24456789999999999999999999999997761
Q ss_pred HHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHHHHHhhhchh
Q 010275 328 VVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQT 407 (514)
Q Consensus 328 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (514)
T Consensus 230 -------------------------------------------------------------------------------- 229 (317)
T PF00026_consen 230 -------------------------------------------------------------------------------- 229 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEeccCCCCCCCcE
Q 010275 408 QENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLW 487 (514)
Q Consensus 408 ~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~ 487 (514)
..+.|.++|+....+|.|+|.|++.+++|+|++|+.+........|...|+.++. ....+.+
T Consensus 230 -----------------~~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~-~~~~~~~ 291 (317)
T PF00026_consen 230 -----------------SDGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDS-SDDSDDW 291 (317)
T ss_dssp -----------------ECSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEESS-TTSSSEE
T ss_pred -----------------cceeEEEecccccccceEEEeeCCEEEEecchHhcccccccccceeEeeeecccc-cccCCce
Confidence 0167899999888899999999999999999999998877655689999998664 4455789
Q ss_pred EeCHhhhcceEEEEeCCCCeEEEEEc
Q 010275 488 ILGDVFMGRYHTVFDFGELRVGFAEA 513 (514)
Q Consensus 488 iLG~~fl~~~y~vfD~~~~riGfa~~ 513 (514)
|||.+|||++|++||++++|||||+|
T Consensus 292 iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 292 ILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred EecHHHhhceEEEEeCCCCEEEEecC
Confidence 99999999999999999999999997
No 13
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=2.2e-51 Score=408.31 Aligned_cols=272 Identities=34% Similarity=0.552 Sum_probs=235.1
Q ss_pred EEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceee-cCeEEEEEecCCe-EEEEEEEEEEE
Q 010275 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKK-NGESASIQYGTGA-IAGFFSYDSVK 167 (514)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~-~~~~~~~~Yg~G~-~~G~~~~D~v~ 167 (514)
|+++|+||||||++.|++||||+++||++..|. ...|..+..|++++|+|++. .++.+.+.|++|+ +.|.+++|+|+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~-~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ 79 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP-AAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVS 79 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC-chhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEE
Confidence 789999999999999999999999999999996 22455667899999999987 4789999999997 89999999999
Q ss_pred EeeeeecCceEEEEEecCCccccccccceeeeccccccccC---CCcchHHHHHHcCCCCCCeEEEEecCCCCCCCCceE
Q 010275 168 VGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVG---NAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEI 244 (514)
Q Consensus 168 ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~---~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L 244 (514)
+|+.+++++.||+++...+..+.....+||||||++..+.. ...+++++|++|+. +++||+||.+. ..|+|
T Consensus 80 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~----~~G~l 153 (278)
T cd06097 80 IGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKA----APGFY 153 (278)
T ss_pred ECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCC----CCcEE
Confidence 99999999999999876553445567899999999877542 35678999999864 79999999863 27999
Q ss_pred EECCCCCCCcccceeEEeccc-ccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCCcccc
Q 010275 245 VFGGVDPNHYKGKHTYVPVTQ-KGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQ 323 (514)
Q Consensus 245 ~fGg~D~~~~~g~l~~~pv~~-~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~~~~~ 323 (514)
+|||+|+++|.|++.|+|+.. ..+|.|.+++|.|++.... ...+..++|||||+++++|.+++++|.+++.+.
T Consensus 154 ~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~----- 227 (278)
T cd06097 154 TFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVPGA----- 227 (278)
T ss_pred EEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCcCC-----
Confidence 999999999999999999976 7899999999999987432 346788999999999999999999999988433
Q ss_pred cchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHHHHHhh
Q 010275 324 QCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQ 403 (514)
Q Consensus 324 ~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (514)
T Consensus 228 -------------------------------------------------------------------------------- 227 (278)
T cd06097 228 -------------------------------------------------------------------------------- 227 (278)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEeccCCCCC
Q 010275 404 QNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPR 483 (514)
Q Consensus 404 ~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~ 483 (514)
.+....+.|.+||+. .+|+|+|+|
T Consensus 228 -----------------~~~~~~~~~~~~C~~--~~P~i~f~~------------------------------------- 251 (278)
T cd06097 228 -----------------YYDSEYGGWVFPCDT--TLPDLSFAV------------------------------------- 251 (278)
T ss_pred -----------------cccCCCCEEEEECCC--CCCCEEEEE-------------------------------------
Confidence 011235679999995 399999999
Q ss_pred CCcEEeCHhhhcceEEEEeCCCCeEEEEE
Q 010275 484 GPLWILGDVFMGRYHTVFDFGELRVGFAE 512 (514)
Q Consensus 484 ~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 512 (514)
.||||++|||++|+|||++++|||||+
T Consensus 252 --~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 --FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred --EEEEcchhhCceeEEEcCCCceeeecC
Confidence 589999999999999999999999995
No 14
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.7e-50 Score=416.93 Aligned_cols=316 Identities=29% Similarity=0.480 Sum_probs=246.6
Q ss_pred ceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCeEEEEEEEEEEE
Q 010275 88 AQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVK 167 (514)
Q Consensus 88 ~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~~G~~~~D~v~ 167 (514)
..|+++|.||||+|++.|+|||||+++||+|..| |..++.|+|++|+|++..++.|.+.|++|++.|.+++|+|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~-----~~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ 76 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPH-----PFIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVS 76 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCC-----ccccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEE
Confidence 4699999999999999999999999999999877 33467899999999999999999999999999999999999
Q ss_pred EeeeeecCce----EEEEEecCCccccccccceeeecccccccc--CCCcchHHHHHHcCCCCCCeEEEEecCCC-----
Q 010275 168 VGDLVVKDQE----FIEATREPGVTFMVAKFDGILGLGFQEISV--GNAVPVWYNMVKQGLIQDPVFSFWLNRNQ----- 236 (514)
Q Consensus 168 ig~~~i~~~~----fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~--~~~~~~l~~L~~qg~i~~~~FSl~l~~~~----- 236 (514)
||+. .++. |+++....+..+.....+||||||++.++. ....|++++|++|+.+ .++||+||+...
T Consensus 77 ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~ 153 (364)
T cd05473 77 IPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNG 153 (364)
T ss_pred ECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEeccccccccc
Confidence 9863 2333 344433332111223579999999998764 2457899999999987 579999986321
Q ss_pred --CCCCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCC---CceEEEcCCCCCcccCHHHHHHH
Q 010275 237 --QEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAG---GCSAIADSGTSLLAGPTTVITMI 311 (514)
Q Consensus 237 --~~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~---~~~aiiDSGtt~i~lP~~~~~~l 311 (514)
.....|.|+|||+|+++|.|++.|+|+....+|.|.+++|+|++..+..... ...++|||||+++++|++++++|
T Consensus 154 ~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l 233 (364)
T cd05473 154 SASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAA 233 (364)
T ss_pred ccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHH
Confidence 1224799999999999999999999999889999999999999988754321 24699999999999999999999
Q ss_pred HHHhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhh
Q 010275 312 NHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSAC 391 (514)
Q Consensus 312 ~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
.+++++.....
T Consensus 234 ~~~l~~~~~~~--------------------------------------------------------------------- 244 (364)
T cd05473 234 VDAIKAASLIE--------------------------------------------------------------------- 244 (364)
T ss_pred HHHHHhhcccc---------------------------------------------------------------------
Confidence 99997651000
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCC-CCceeeeCCCCC-----CCCeEEEEECC------EEEEeCcccce
Q 010275 392 EMAVVWMQNQLQQNQTQENILQYVNELCDRMPSP-MGESAVDCGKLS-----SMPIVSFTIGG------KVFDLSPEEYI 459 (514)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~-~g~~~~~C~~~~-----~~P~l~f~f~g------~~~~l~~~~y~ 459 (514)
..+.. .+.+.++|.... .+|+|+|+|+| .+++|+|++|+
T Consensus 245 -----------------------------~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~ 295 (364)
T cd05473 245 -----------------------------DFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQLYL 295 (364)
T ss_pred -----------------------------cCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHHHhh
Confidence 00011 122356786543 58999999964 47899999999
Q ss_pred EeecC-CCcceEEEceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010275 460 LKVGE-GPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 460 ~~~~~-~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
..... .....|+. +.. . ...+.||||+.|||++|+|||++++|||||+++
T Consensus 296 ~~~~~~~~~~~C~~-~~~-~---~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~ 346 (364)
T cd05473 296 RPVEDHGTQLDCYK-FAI-S---QSTNGTVIGAVIMEGFYVVFDRANKRVGFAVST 346 (364)
T ss_pred hhhccCCCcceeeE-Eee-e---cCCCceEEeeeeEcceEEEEECCCCEEeeEecc
Confidence 86432 22457975 211 1 123469999999999999999999999999874
No 15
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=6.1e-50 Score=419.02 Aligned_cols=307 Identities=25% Similarity=0.400 Sum_probs=237.0
Q ss_pred cCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccC--CCCcccCCCCCceeecC------------------
Q 010275 86 MDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACY--FHSKYKSSQSSTYKKNG------------------ 145 (514)
Q Consensus 86 ~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~--~~~~f~~~~SsT~~~~~------------------ 145 (514)
.+++|+++|.||||||++.|++||||+++||+|.+|. .|. .++.|||++|+||+...
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~---~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD---DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc---ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC
Confidence 3679999999999999999999999999999999995 676 45799999999998742
Q ss_pred --eEEEEEecCCe-EEEEEEEEEEEEee-----eeecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHH
Q 010275 146 --ESASIQYGTGA-IAGFFSYDSVKVGD-----LVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNM 217 (514)
Q Consensus 146 --~~~~~~Yg~G~-~~G~~~~D~v~ig~-----~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L 217 (514)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||+....+ .|. ...+||||||+...+ ++.||
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g-~f~-~~~~GilGLG~~~~S------l~sql 229 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGG-TFD-EKGSGIVGLGGGPLS------LISQL 229 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCC-Ccc-CCCceeEecCCCCcc------HHHHh
Confidence 78999999998 58999999999997 4688999999987654 232 257899999998776 55666
Q ss_pred HHcCCCCCCeEEEEecCCC-CCCCCceEEECCCCCCCccc-ceeEEeccc---ccceEEEEceEEECCeeccccCC----
Q 010275 218 VKQGLIQDPVFSFWLNRNQ-QEDEGGEIVFGGVDPNHYKG-KHTYVPVTQ---KGYWQFNMGDVLIGGKPTGYCAG---- 288 (514)
Q Consensus 218 ~~qg~i~~~~FSl~l~~~~-~~~~~G~L~fGg~D~~~~~g-~l~~~pv~~---~~~w~v~l~~i~v~g~~~~~~~~---- 288 (514)
..+ +. ++||+||.+.. +....|.|+||+. .++.| .+.|+|+.. ..+|.|.+++|+||++.+.+...
T Consensus 230 ~~~--~~-~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~ 304 (431)
T PLN03146 230 GSS--IG-GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNG 304 (431)
T ss_pred hHh--hC-CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCcccccc
Confidence 543 44 59999997532 2234799999984 45544 488999963 46899999999999988764322
Q ss_pred --CceEEEcCCCCCcccCHHHHHHHHHHhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccc
Q 010275 289 --GCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSM 366 (514)
Q Consensus 289 --~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 366 (514)
...+||||||++++||+++|++|.+++...- ..... .
T Consensus 305 ~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~----------------------~~~~~------------~------- 343 (431)
T PLN03146 305 VEEGNIIIDSGTTLTLLPSDFYSELESAVEEAI----------------------GGERV------------S------- 343 (431)
T ss_pred CCCCcEEEeCCccceecCHHHHHHHHHHHHHHh----------------------ccccC------------C-------
Confidence 3479999999999999999999988874430 00000 0
Q ss_pred cccccccccCccccCccccccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEE
Q 010275 367 GIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTI 446 (514)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f 446 (514)
+. ......|+.... ...+|+|+|+|
T Consensus 344 ------------------------------------------~~--~~~~~~C~~~~~-----------~~~~P~i~~~F 368 (431)
T PLN03146 344 ------------------------------------------DP--QGLLSLCYSSTS-----------DIKLPIITAHF 368 (431)
T ss_pred ------------------------------------------CC--CCCCCccccCCC-----------CCCCCeEEEEE
Confidence 00 000113433110 13689999999
Q ss_pred CCEEEEeCcccceEeecCCCcceEEEceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEc
Q 010275 447 GGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEA 513 (514)
Q Consensus 447 ~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~ 513 (514)
+|+.+.|+|++|++...++ ..|+. +.. ..+.||||+.|||++|++||++++|||||++
T Consensus 369 ~Ga~~~l~~~~~~~~~~~~--~~Cl~-~~~------~~~~~IlG~~~q~~~~vvyDl~~~~igFa~~ 426 (431)
T PLN03146 369 TGADVKLQPLNTFVKVSED--LVCFA-MIP------TSSIAIFGNLAQMNFLVGYDLESKTVSFKPT 426 (431)
T ss_pred CCCeeecCcceeEEEcCCC--cEEEE-Eec------CCCceEECeeeEeeEEEEEECCCCEEeeecC
Confidence 9999999999999976543 57986 332 1236999999999999999999999999986
No 16
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-50 Score=417.33 Aligned_cols=320 Identities=47% Similarity=0.828 Sum_probs=264.6
Q ss_pred eeEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCC-CCc-ccCCCCCceeecCeE--------
Q 010275 78 DIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYF-HSK-YKSSQSSTYKKNGES-------- 147 (514)
Q Consensus 78 ~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~-~~~-f~~~~SsT~~~~~~~-------- 147 (514)
...++..+.+++|+++|+||||||++.|++||||+++||+|..|.. .|.. +.. |+|++|+||+..+|.
T Consensus 35 ~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~--~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~ 112 (398)
T KOG1339|consen 35 LPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS--ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLP 112 (398)
T ss_pred cccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc--cccccCCCccCccccccccccCCCCccccccc
Confidence 3456667778899999999999999999999999999999999952 6874 444 999999999997743
Q ss_pred ----------EEEEecCCe-EEEEEEEEEEEEee---eeecCceEEEEEecCCccccc-cccceeeeccccccccCCCcc
Q 010275 148 ----------ASIQYGTGA-IAGFFSYDSVKVGD---LVVKDQEFIEATREPGVTFMV-AKFDGILGLGFQEISVGNAVP 212 (514)
Q Consensus 148 ----------~~~~Yg~G~-~~G~~~~D~v~ig~---~~i~~~~fg~~~~~~~~~~~~-~~~~GIlGLg~~~~s~~~~~~ 212 (514)
|.+.||+|+ ++|.+++|+|++++ ..++++.|||+....+. +.. .+++||||||+..++...+.+
T Consensus 113 ~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~~ 191 (398)
T KOG1339|consen 113 QSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQLP 191 (398)
T ss_pred cCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceeecc
Confidence 999999955 89999999999998 77888999999988764 444 678999999999998554444
Q ss_pred hHHHHHHcCCCCCCeEEEEecCCCCC-CCCceEEECCCCCCCcccceeEEeccccc--ceEEEEceEEECCee----ccc
Q 010275 213 VWYNMVKQGLIQDPVFSFWLNRNQQE-DEGGEIVFGGVDPNHYKGKHTYVPVTQKG--YWQFNMGDVLIGGKP----TGY 285 (514)
Q Consensus 213 ~l~~L~~qg~i~~~~FSl~l~~~~~~-~~~G~L~fGg~D~~~~~g~l~~~pv~~~~--~w~v~l~~i~v~g~~----~~~ 285 (514)
.+.++ .++||+||.+.... ..+|.|+||++|+.++.+.+.|+|+.... +|.+.+.+|+|+++. ..+
T Consensus 192 ~~~~~-------~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~ 264 (398)
T KOG1339|consen 192 SFYNA-------INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLF 264 (398)
T ss_pred cccCC-------ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceE
Confidence 33222 23899999987432 24899999999999999999999998877 999999999999843 222
Q ss_pred cCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCccc
Q 010275 286 CAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVS 365 (514)
Q Consensus 286 ~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 365 (514)
+.+...+++||||++++||.++|++|.+++++.-
T Consensus 265 ~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~---------------------------------------------- 298 (398)
T KOG1339|consen 265 CTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEV---------------------------------------------- 298 (398)
T ss_pred ecCCCCEEEECCcceeeccHHHHHHHHHHHHhhe----------------------------------------------
Confidence 3336889999999999999999999999997650
Q ss_pred ccccccccccCccccCccccccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCC----CCe
Q 010275 366 MGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSS----MPI 441 (514)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~----~P~ 441 (514)
......+.+.++|..... +|.
T Consensus 299 -------------------------------------------------------~~~~~~~~~~~~C~~~~~~~~~~P~ 323 (398)
T KOG1339|consen 299 -------------------------------------------------------SVVGTDGEYFVPCFSISTSGVKLPD 323 (398)
T ss_pred -------------------------------------------------------eccccCCceeeecccCCCCcccCCc
Confidence 001234567788887766 999
Q ss_pred EEEEEC-CEEEEeCcccceEeecCCCcceEEEceEeccCCCCCCCcEEeCHhhhcceEEEEeCC-CCeEEEEEc
Q 010275 442 VSFTIG-GKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFG-ELRVGFAEA 513 (514)
Q Consensus 442 l~f~f~-g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~-~~riGfa~~ 513 (514)
|+|+|+ |+.|.+++++|+++....... |+..+..++.. +.||||+.|+|+++++||.. ++|||||++
T Consensus 324 i~~~f~~g~~~~l~~~~y~~~~~~~~~~-Cl~~~~~~~~~----~~~ilG~~~~~~~~~~~D~~~~~riGfa~~ 392 (398)
T KOG1339|consen 324 ITFHFGGGAVFSLPPKNYLVEVSDGGGV-CLAFFNGMDSG----PLWILGDVFQQNYLVVFDLGENSRVGFAPA 392 (398)
T ss_pred EEEEECCCcEEEeCccceEEEECCCCCc-eeeEEecCCCC----ceEEEchHHhCCEEEEEeCCCCCEEEeccc
Confidence 999998 899999999999987655222 99988765421 68999999999999999999 999999985
No 17
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.1e-49 Score=404.77 Aligned_cols=283 Identities=28% Similarity=0.446 Sum_probs=235.7
Q ss_pred ceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCC--CCcccCCCCCceeec----------------CeEEE
Q 010275 88 AQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYF--HSKYKSSQSSTYKKN----------------GESAS 149 (514)
Q Consensus 88 ~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~--~~~f~~~~SsT~~~~----------------~~~~~ 149 (514)
+.|+++|+||||+|++.|+|||||+++||+|..|. .|.. ++.|+|++|+|++.. .|.|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~---~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK---NCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC---CcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEE
Confidence 47999999999999999999999999999999996 5653 478999999999863 57899
Q ss_pred EEecCCe-EEEEEEEEEEEEeeeeec-------CceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcC
Q 010275 150 IQYGTGA-IAGFFSYDSVKVGDLVVK-------DQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQG 221 (514)
Q Consensus 150 ~~Yg~G~-~~G~~~~D~v~ig~~~i~-------~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg 221 (514)
+.|++|+ +.|.+++|+|+||+..+. ++.|||+....+ .|.....+||||||+...+. ..+.+..|++++
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~ 155 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNG--LPTPIILLFTKR 155 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccc--cCchhHHHHHhc
Confidence 9999997 799999999999987653 467999877654 34455679999999987542 223445577887
Q ss_pred CCCC--CeEEEEecCCCCCCCCceEEECCCCCCCcc----------cceeEEecccccceEEEEceEEECCeec-cccCC
Q 010275 222 LIQD--PVFSFWLNRNQQEDEGGEIVFGGVDPNHYK----------GKHTYVPVTQKGYWQFNMGDVLIGGKPT-GYCAG 288 (514)
Q Consensus 222 ~i~~--~~FSl~l~~~~~~~~~G~L~fGg~D~~~~~----------g~l~~~pv~~~~~w~v~l~~i~v~g~~~-~~~~~ 288 (514)
.+.. ++||+||.+. .|.|+|||+|++++. +++.|+|+....+|.|.+++|+++++.. .....
T Consensus 156 ~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~ 230 (326)
T cd06096 156 PKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTK 230 (326)
T ss_pred ccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceeccc
Confidence 7665 9999999864 699999999999987 7899999988899999999999998861 12345
Q ss_pred CceEEEcCCCCCcccCHHHHHHHHHHhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccc
Q 010275 289 GCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGI 368 (514)
Q Consensus 289 ~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 368 (514)
...++|||||++++||++++++|.++
T Consensus 231 ~~~aivDSGTs~~~lp~~~~~~l~~~------------------------------------------------------ 256 (326)
T cd06096 231 GLGMLVDSGSTLSHFPEDLYNKINNF------------------------------------------------------ 256 (326)
T ss_pred CCCEEEeCCCCcccCCHHHHHHHHhh------------------------------------------------------
Confidence 77899999999999999999887442
Q ss_pred cccccccCccccCccccccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEEC-
Q 010275 369 ESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIG- 447 (514)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~- 447 (514)
+|+|+|.|+
T Consensus 257 ----------------------------------------------------------------------~P~i~~~f~~ 266 (326)
T cd06096 257 ----------------------------------------------------------------------FPTITIIFEN 266 (326)
T ss_pred ----------------------------------------------------------------------cCcEEEEEcC
Confidence 289999997
Q ss_pred CEEEEeCcccceEeecCCCcceEEEceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010275 448 GKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 448 g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
|++++++|++|+++.... .|..++.. ..+.||||++|||++|+|||++++|||||++.
T Consensus 267 g~~~~i~p~~y~~~~~~~---~c~~~~~~------~~~~~ILG~~flr~~y~vFD~~~~riGfa~~~ 324 (326)
T cd06096 267 NLKIDWKPSSYLYKKESF---WCKGGEKS------VSNKPILGASFFKNKQIIFDLDNNRIGFVESN 324 (326)
T ss_pred CcEEEECHHHhccccCCc---eEEEEEec------CCCceEEChHHhcCcEEEEECcCCEEeeEcCC
Confidence 899999999999875433 47665542 23579999999999999999999999999873
No 18
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=7.4e-49 Score=393.49 Aligned_cols=278 Identities=31% Similarity=0.555 Sum_probs=240.2
Q ss_pred eEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCC-eEEEEEEEEEEE
Q 010275 89 QYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTG-AIAGFFSYDSVK 167 (514)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G-~~~G~~~~D~v~ 167 (514)
.|+++|.||||+|++.|++||||+++||+ .|.+.|++| .+.|.+++|+|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------~~~~~Y~~g~~~~G~~~~D~v~ 52 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------DFSISYGDGTSASGTWGTDTVS 52 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------eeEEEeccCCcEEEEEEEEEEE
Confidence 69999999999999999999999999996 578899996 589999999999
Q ss_pred EeeeeecCceEEEEEecCCccccccccceeeecccccccc-----CCCcchHHHHHHcCCCCCCeEEEEecCCCCCCCCc
Q 010275 168 VGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV-----GNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGG 242 (514)
Q Consensus 168 ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~-----~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~~~G 242 (514)
+++..++++.|||+.... ..+||||||+...+. ...++++.+|++||.|++++||+||.+.+ ...|
T Consensus 53 ~g~~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g 123 (295)
T cd05474 53 IGGATVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTG 123 (295)
T ss_pred ECCeEecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCce
Confidence 999999999999998732 358999999988743 23457999999999999999999998753 2379
Q ss_pred eEEECCCCCCCcccceeEEecccc------cceEEEEceEEECCeecc--ccCCCceEEEcCCCCCcccCHHHHHHHHHH
Q 010275 243 EIVFGGVDPNHYKGKHTYVPVTQK------GYWQFNMGDVLIGGKPTG--YCAGGCSAIADSGTSLLAGPTTVITMINHA 314 (514)
Q Consensus 243 ~L~fGg~D~~~~~g~l~~~pv~~~------~~w~v~l~~i~v~g~~~~--~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~ 314 (514)
.|+|||+|++++.|++.|+|+... .+|.|.+++|++++..+. .......++|||||+++++|.+++++|.++
T Consensus 124 ~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~ 203 (295)
T cd05474 124 SILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQ 203 (295)
T ss_pred eEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHH
Confidence 999999999999999999999765 789999999999998753 234567899999999999999999999999
Q ss_pred hcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHH
Q 010275 315 IGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMA 394 (514)
Q Consensus 315 i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (514)
+++..
T Consensus 204 ~~~~~--------------------------------------------------------------------------- 208 (295)
T cd05474 204 LGATY--------------------------------------------------------------------------- 208 (295)
T ss_pred hCCEE---------------------------------------------------------------------------
Confidence 87651
Q ss_pred HHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecC--CCcceEEE
Q 010275 395 VVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGE--GPEAQCIS 472 (514)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~--~~~~~C~~ 472 (514)
....+.|.++|+.... |+|+|+|+|++++||+++|+++... .....|.+
T Consensus 209 ----------------------------~~~~~~~~~~C~~~~~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~~ 259 (295)
T cd05474 209 ----------------------------DSDEGLYVVDCDAKDD-GSLTFNFGGATISVPLSDLVLPASTDDGGDGACYL 259 (295)
T ss_pred ----------------------------cCCCcEEEEeCCCCCC-CEEEEEECCeEEEEEHHHhEeccccCCCCCCCeEE
Confidence 0113568899997766 9999999999999999999987642 34578998
Q ss_pred ceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEc
Q 010275 473 GFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEA 513 (514)
Q Consensus 473 ~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~ 513 (514)
.|+..+ .+.||||++|||++|++||++++|||||+|
T Consensus 260 ~i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 260 GIQPST-----SDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EEEeCC-----CCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 888643 158999999999999999999999999986
No 19
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=3.3e-48 Score=389.59 Aligned_cols=287 Identities=25% Similarity=0.442 Sum_probs=223.9
Q ss_pred eEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCe-EEEEEEEEEEE
Q 010275 89 QYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA-IAGFFSYDSVK 167 (514)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~-~~G~~~~D~v~ 167 (514)
+|+++|.||||||++.|++||||+++||+|.+| |.|.+.|++|+ ++|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------~~~~i~Yg~Gs~~~G~~~~D~v~ 56 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------CLYQVSYGDGSYTTGDLATDTLT 56 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------CeeeeEeCCCceEEEEEEEEEEE
Confidence 599999999999999999999999999986544 67999999998 58999999999
Q ss_pred Eeee-eecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCCCCCCCCceEEE
Q 010275 168 VGDL-VVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVF 246 (514)
Q Consensus 168 ig~~-~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~f 246 (514)
||+. .++++.|||+....+. + ...+||||||+...+ +..+|..+ .+++||+||.+.. ....|+|+|
T Consensus 57 ig~~~~~~~~~Fg~~~~~~~~-~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~f 123 (299)
T cd05472 57 LGSSDVVPGFAFGCGHDNEGL-F--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSF 123 (299)
T ss_pred eCCCCccCCEEEECCccCCCc-c--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEe
Confidence 9998 8999999999876542 2 267999999998765 44455544 3589999998743 134799999
Q ss_pred CCCCCCCcccceeEEecccc----cceEEEEceEEECCeecccc---CCCceEEEcCCCCCcccCHHHHHHHHHHhcCCC
Q 010275 247 GGVDPNHYKGKHTYVPVTQK----GYWQFNMGDVLIGGKPTGYC---AGGCSAIADSGTSLLAGPTTVITMINHAIGASG 319 (514)
Q Consensus 247 Gg~D~~~~~g~l~~~pv~~~----~~w~v~l~~i~v~g~~~~~~---~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~ 319 (514)
||+|++ .|++.|+|+... .+|.|.+++|+|+++.+... .....++|||||+++++|++++++|.+++.+..
T Consensus 124 Gg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~ 201 (299)
T cd05472 124 GAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAAM 201 (299)
T ss_pred CCcccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHHh
Confidence 999998 899999999653 68999999999999987543 245689999999999999999999999886540
Q ss_pred cccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHHH
Q 010275 320 VVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQ 399 (514)
Q Consensus 320 ~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (514)
. ..... .+
T Consensus 202 ~----------------------~~~~~-----~~--------------------------------------------- 209 (299)
T cd05472 202 A----------------------AYPRA-----PG--------------------------------------------- 209 (299)
T ss_pred c----------------------cCCCC-----CC---------------------------------------------
Confidence 0 00000 00
Q ss_pred HHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEEC-CEEEEeCcccceEeecCCCcceEEEceEecc
Q 010275 400 NQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIG-GKVFDLSPEEYILKVGEGPEAQCISGFTAMD 478 (514)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~-g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~ 478 (514)
.+..+.|+. ++|.....+|+|+|+|+ |++++|+|++|++... ..+..|+. +...+
T Consensus 210 -------------~~~~~~C~~---------~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~-~~~~~C~~-~~~~~ 265 (299)
T cd05472 210 -------------FSILDTCYD---------LSGFRSVSVPTVSLHFQGGADVELDASGVLYPVD-DSSQVCLA-FAGTS 265 (299)
T ss_pred -------------CCCCCccCc---------CCCCcCCccCCEEEEECCCCEEEeCcccEEEEec-CCCCEEEE-EeCCC
Confidence 000012332 22333458999999997 8999999999998432 23467974 44321
Q ss_pred CCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEc
Q 010275 479 VPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEA 513 (514)
Q Consensus 479 ~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~ 513 (514)
..++.||||+.|||++|+|||++++|||||++
T Consensus 266 ---~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~ 297 (299)
T cd05472 266 ---DDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPG 297 (299)
T ss_pred ---CCCCCEEEchHHccceEEEEECCCCEEeEecC
Confidence 23457999999999999999999999999986
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=6.2e-46 Score=369.32 Aligned_cols=227 Identities=51% Similarity=0.893 Sum_probs=198.9
Q ss_pred EEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCc--ccCCCCCceeecCeEEEEEecCCeEEEEEEEEEEE
Q 010275 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSK--YKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVK 167 (514)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~--f~~~~SsT~~~~~~~~~~~Yg~G~~~G~~~~D~v~ 167 (514)
|+++|.||+|+|++.|++||||+++||+|..|.. ..|..... |++..|+++....+.+.+.|++|++.|.+++|+|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~ 79 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTS-CSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVT 79 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCc-cccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEE
Confidence 7899999999999999999999999999999962 22223333 89999999999999999999999999999999999
Q ss_pred EeeeeecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCCCCCCCCceEEEC
Q 010275 168 VGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFG 247 (514)
Q Consensus 168 ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fG 247 (514)
+++..++++.|||+..... .+.....+||||||+...+.....+++.+|.+++.|.+++||+||.+.......|.|+||
T Consensus 80 ~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~G 158 (283)
T cd05471 80 IGGLTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFG 158 (283)
T ss_pred ECCEEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEc
Confidence 9999999999999998754 334567899999999987766678899999999999999999999985322348999999
Q ss_pred CCCCCCcccceeEEeccc--ccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCC
Q 010275 248 GVDPNHYKGKHTYVPVTQ--KGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318 (514)
Q Consensus 248 g~D~~~~~g~l~~~pv~~--~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~ 318 (514)
|+|++++.+++.|+|+.. ..+|.|.+++|.+++...........++|||||+++++|.+++++|++++.+.
T Consensus 159 g~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~ 231 (283)
T cd05471 159 GIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAA 231 (283)
T ss_pred ccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCc
Confidence 999999999999999987 78999999999999974222356788999999999999999999999999776
No 21
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=2.7e-45 Score=363.39 Aligned_cols=258 Identities=25% Similarity=0.435 Sum_probs=213.2
Q ss_pred ceEEEEEEecCCCCeeEEEecCCCCceeEeCC-CCCCCcccCCCCcccCCCCCceeecCeEEEEEecCC-eEEEEEEEEE
Q 010275 88 AQYYGEIGIGTPPQKFTVIFDTGSSNLWVPST-NCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTG-AIAGFFSYDS 165 (514)
Q Consensus 88 ~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~-~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G-~~~G~~~~D~ 165 (514)
++|+++|.||||||++.|++||||+++||+|. .|. .| .|.|.+.|++| .+.|.+++|+
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~---~c-----------------~c~~~i~Ygd~~~~~G~~~~D~ 60 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT---GC-----------------QCDYEIEYADGGSSMGVLVTDI 60 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC---CC-----------------cCccEeEeCCCCceEEEEEEEE
Confidence 47999999999999999999999999999984 564 45 46799999965 5899999999
Q ss_pred EEEee----eeecCceEEEEEecCCcc-ccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCCCCCCC
Q 010275 166 VKVGD----LVVKDQEFIEATREPGVT-FMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDE 240 (514)
Q Consensus 166 v~ig~----~~i~~~~fg~~~~~~~~~-~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~~ 240 (514)
|+++. ..++++.|||+....+.. +.....+||||||+...+ ++.+|.+++.| +++||+||.+. .
T Consensus 61 v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~~----~ 129 (273)
T cd05475 61 FSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKIS------LPSQLASQGII-KNVIGHCLSSN----G 129 (273)
T ss_pred EEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCC------HHHHHHhcCCc-CceEEEEccCC----C
Confidence 99964 467899999997654421 234467999999997654 78999999999 89999999763 2
Q ss_pred CceEEECCCCCCCcccceeEEecccc---cceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcC
Q 010275 241 GGEIVFGGVDPNHYKGKHTYVPVTQK---GYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGA 317 (514)
Q Consensus 241 ~G~L~fGg~D~~~~~g~l~~~pv~~~---~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~ 317 (514)
+|.|+|| |..++.|++.|+|+.+. .+|.|++.+|+|+++.. ......++|||||+++++|+++|
T Consensus 130 ~g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~--~~~~~~~ivDTGTt~t~lp~~~y--------- 196 (273)
T cd05475 130 GGFLFFG--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPT--GGKGLEVVFDSGSSYTYFNAQAY--------- 196 (273)
T ss_pred CeEEEEC--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEEC--cCCCceEEEECCCceEEcCCccc---------
Confidence 6899998 45667899999999764 79999999999999854 34567899999999999996422
Q ss_pred CCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHH
Q 010275 318 SGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVW 397 (514)
Q Consensus 318 ~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (514)
T Consensus 197 -------------------------------------------------------------------------------- 196 (273)
T cd05475 197 -------------------------------------------------------------------------------- 196 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECC----EEEEeCcccceEeecCCCcceEEEc
Q 010275 398 MQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGG----KVFDLSPEEYILKVGEGPEAQCISG 473 (514)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g----~~~~l~~~~y~~~~~~~~~~~C~~~ 473 (514)
+|+|+|+|++ ++++|+|++|++.... +..|+..
T Consensus 197 -----------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~--~~~Cl~~ 233 (273)
T cd05475 197 -----------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEK--GNVCLGI 233 (273)
T ss_pred -----------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCC--CCEEEEE
Confidence 5889999976 7999999999987543 3579886
Q ss_pred eEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010275 474 FTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 474 i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
+...+. ..++.||||+.|||++|++||++++|||||+++
T Consensus 234 ~~~~~~--~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~ 272 (273)
T cd05475 234 LNGSEI--GLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSD 272 (273)
T ss_pred ecCCCc--CCCceEEECceEEEeeEEEEECcCCEeCcccCC
Confidence 654321 224589999999999999999999999999864
No 22
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.7e-45 Score=362.01 Aligned_cols=248 Identities=29% Similarity=0.513 Sum_probs=210.2
Q ss_pred eEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCe-EEEEEEEEEEE
Q 010275 89 QYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA-IAGFFSYDSVK 167 (514)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~-~~G~~~~D~v~ 167 (514)
+|+++|+||||||++.|+|||||+++||+| |.+.+.|++|+ +.|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------~~~~~~Y~dg~~~~G~~~~D~v~ 53 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------CSYEYSYGDGSSTSGVLATETFT 53 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------CceEeEeCCCceeeeeEEEEEEE
Confidence 599999999999999999999999999975 45789999775 89999999999
Q ss_pred Eeee--eecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCCCCCCCCceEE
Q 010275 168 VGDL--VVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIV 245 (514)
Q Consensus 168 ig~~--~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~ 245 (514)
|++. .++++.|||+....+ +.....+||||||+...+ ++.+|..++ ++||+||.+..+....|+|+
T Consensus 54 ~g~~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~ 121 (265)
T cd05476 54 FGDSSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLI 121 (265)
T ss_pred ecCCCCccCCEEEEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEE
Confidence 9998 899999999997654 445678999999997654 667887776 89999998753233589999
Q ss_pred ECCCCCCCcccceeEEeccc----ccceEEEEceEEECCeeccc--------cCCCceEEEcCCCCCcccCHHHHHHHHH
Q 010275 246 FGGVDPNHYKGKHTYVPVTQ----KGYWQFNMGDVLIGGKPTGY--------CAGGCSAIADSGTSLLAGPTTVITMINH 313 (514)
Q Consensus 246 fGg~D~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~--------~~~~~~aiiDSGtt~i~lP~~~~~~l~~ 313 (514)
|||+|++ +.+++.|+|+.. ..+|.+.+++|+|+++.+.+ ......++|||||+++++|+++
T Consensus 122 fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~------ 194 (265)
T cd05476 122 LGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPA------ 194 (265)
T ss_pred ECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCccc------
Confidence 9999999 999999999965 57999999999999987642 2456789999999999999531
Q ss_pred HhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHH
Q 010275 314 AIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEM 393 (514)
Q Consensus 314 ~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
T Consensus 195 -------------------------------------------------------------------------------- 194 (265)
T cd05476 195 -------------------------------------------------------------------------------- 194 (265)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEEC-CEEEEeCcccceEeecCCCcceEEE
Q 010275 394 AVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIG-GKVFDLSPEEYILKVGEGPEAQCIS 472 (514)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~-g~~~~l~~~~y~~~~~~~~~~~C~~ 472 (514)
+|+|+|+|+ ++++.+++++|+.... ....|+.
T Consensus 195 ---------------------------------------------~P~i~~~f~~~~~~~i~~~~y~~~~~--~~~~C~~ 227 (265)
T cd05476 195 ---------------------------------------------YPDLTLHFDGGADLELPPENYFVDVG--EGVVCLA 227 (265)
T ss_pred ---------------------------------------------cCCEEEEECCCCEEEeCcccEEEECC--CCCEEEE
Confidence 288999998 8999999999998643 3468975
Q ss_pred ceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010275 473 GFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 473 ~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
.+. . ...+.||||++|||++|++||.+++|||||++.
T Consensus 228 ~~~-~----~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~ 264 (265)
T cd05476 228 ILS-S----SSGGVSILGNIQQQNFLVEYDLENSRLGFAPAD 264 (265)
T ss_pred Eec-C----CCCCcEEEChhhcccEEEEEECCCCEEeeecCC
Confidence 332 1 245689999999999999999999999999873
No 23
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=8.8e-42 Score=349.94 Aligned_cols=314 Identities=16% Similarity=0.227 Sum_probs=230.3
Q ss_pred ecCCCCe-eEEEecCCCCceeEeCCCCCC---------CcccCCCCcccCCC------CCceeecCeEEEEE-ecCCe-E
Q 010275 96 IGTPPQK-FTVIFDTGSSNLWVPSTNCYF---------SVACYFHSKYKSSQ------SSTYKKNGESASIQ-YGTGA-I 157 (514)
Q Consensus 96 iGtP~Q~-~~v~lDTGSs~~Wv~~~~C~~---------~~~C~~~~~f~~~~------SsT~~~~~~~~~~~-Yg~G~-~ 157 (514)
+|||-.+ +.|++||||+++||+|.+|.. +..|..+..|++.. ++......|.|... |++|+ .
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~t 81 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGECA 81 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcEe
Confidence 5788777 999999999999997765431 45676566665542 22233344767554 77885 7
Q ss_pred EEEEEEEEEEEee--------eeecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEE
Q 010275 158 AGFFSYDSVKVGD--------LVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFS 229 (514)
Q Consensus 158 ~G~~~~D~v~ig~--------~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FS 229 (514)
.|.+++|+++|+. ..++++.|||+.......+ ...++||||||+..++ +..||..++. .+++||
T Consensus 82 ~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~FS 153 (362)
T cd05489 82 TGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARKFA 153 (362)
T ss_pred eEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcceE
Confidence 8999999999973 3688999999987532122 2347999999999887 4556766654 569999
Q ss_pred EEecCCCCCCCCceEEECCCCCCCcc------cceeEEecccc----cceEEEEceEEECCeecccc--------CCCce
Q 010275 230 FWLNRNQQEDEGGEIVFGGVDPNHYK------GKHTYVPVTQK----GYWQFNMGDVLIGGKPTGYC--------AGGCS 291 (514)
Q Consensus 230 l~l~~~~~~~~~G~L~fGg~D~~~~~------g~l~~~pv~~~----~~w~v~l~~i~v~g~~~~~~--------~~~~~ 291 (514)
+||.+.. ...|.|+||+.+..++. +++.|+|+... .+|.|++++|+||++.+.++ .+...
T Consensus 154 ~CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g 231 (362)
T cd05489 154 LCLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGG 231 (362)
T ss_pred EEeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCc
Confidence 9998753 23799999999987774 78999999753 79999999999999987643 23467
Q ss_pred EEEcCCCCCcccCHHHHHHHHHHhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCccccccccc
Q 010275 292 AIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESV 371 (514)
Q Consensus 292 aiiDSGtt~i~lP~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 371 (514)
++|||||++++||+++|++|.+++.+.- ..... ..
T Consensus 232 ~iiDSGTs~t~lp~~~y~~l~~a~~~~~----------------------~~~~~-----------~~------------ 266 (362)
T cd05489 232 VKLSTVVPYTVLRSDIYRAFTQAFAKAT----------------------ARIPR-----------VP------------ 266 (362)
T ss_pred EEEecCCceEEECHHHHHHHHHHHHHHh----------------------cccCc-----------CC------------
Confidence 9999999999999999999999986430 00000 00
Q ss_pred ccccCccccCccccccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECC--E
Q 010275 372 VDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGG--K 449 (514)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g--~ 449 (514)
....+.+.|+.... ...|+....+|+|+|+|+| +
T Consensus 267 ---------------------------------------~~~~~~~~C~~~~~-----~~~~~~~~~~P~it~~f~g~g~ 302 (362)
T cd05489 267 ---------------------------------------AAAVFPELCYPASA-----LGNTRLGYAVPAIDLVLDGGGV 302 (362)
T ss_pred ---------------------------------------CCCCCcCccccCCC-----cCCcccccccceEEEEEeCCCe
Confidence 00001135665331 1233334689999999965 9
Q ss_pred EEEeCcccceEeecCCCcceEEEceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEc
Q 010275 450 VFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEA 513 (514)
Q Consensus 450 ~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~ 513 (514)
+++|+|++|+++..+ ...|+ +|...+.. .++.||||+.|||++|++||.+++|||||++
T Consensus 303 ~~~l~~~ny~~~~~~--~~~Cl-~f~~~~~~--~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 303 NWTIFGANSMVQVKG--GVACL-AFVDGGSE--PRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEEEcCCceEEEcCC--CcEEE-EEeeCCCC--CCceEEEeeheecceEEEEECCCCEeecccC
Confidence 999999999998654 36896 46654321 2458999999999999999999999999975
No 24
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.87 E-value=7.3e-22 Score=167.88 Aligned_cols=108 Identities=61% Similarity=0.958 Sum_probs=94.6
Q ss_pred EEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcc-cCCCCCceeecCeEEEEEecCCeEEEEEEEEEEEEee
Q 010275 92 GEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKY-KSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVKVGD 170 (514)
Q Consensus 92 ~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f-~~~~SsT~~~~~~~~~~~Yg~G~~~G~~~~D~v~ig~ 170 (514)
++|.||||||++.|+|||||+++||++..|. ...|..+..| +|+.|++++...+.|.+.|++|++.|.+++|+|+|++
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~-~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~ 79 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ-SLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGD 79 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC-CcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECC
Confidence 4799999999999999999999999999986 2233445566 9999999999999999999999999999999999999
Q ss_pred eeecCceEEEEEecCCccccccccceeeec
Q 010275 171 LVVKDQEFIEATREPGVTFMVAKFDGILGL 200 (514)
Q Consensus 171 ~~i~~~~fg~~~~~~~~~~~~~~~~GIlGL 200 (514)
..++++.||++....+..+.....+|||||
T Consensus 80 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 80 IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEECCEEEEEEEecCCccccccccccccCC
Confidence 999999999999886643445578999998
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.86 E-value=6.4e-21 Score=174.04 Aligned_cols=136 Identities=35% Similarity=0.572 Sum_probs=106.9
Q ss_pred EEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeec----------------------CeE
Q 010275 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKN----------------------GES 147 (514)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~----------------------~~~ 147 (514)
|+++|.||||+|++.|++||||+.+|++| ..+.|+|.+|+||+.. .|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 89999999999999999999999999987 2577888888888762 268
Q ss_pred EEEEecCCe-EEEEEEEEEEEEee-----eeecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcC
Q 010275 148 ASIQYGTGA-IAGFFSYDSVKVGD-----LVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQG 221 (514)
Q Consensus 148 ~~~~Yg~G~-~~G~~~~D~v~ig~-----~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg 221 (514)
|.+.|++++ +.|.+++|+++++. ..+.++.|||+....+. ....+||||||+..++ ++.||.++
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~---~~~~~GilGLg~~~~S------l~sQl~~~- 140 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGL---FYGADGILGLGRGPLS------LPSQLASS- 140 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTS---STTEEEEEE-SSSTTS------HHHHHHHH-
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccC---CcCCCcccccCCCccc------HHHHHHHh-
Confidence 999999987 68999999999987 45788999999987653 2278999999999887 88888887
Q ss_pred CCCCCeEEEEecCCCCCCCCceEEECC
Q 010275 222 LIQDPVFSFWLNRNQQEDEGGEIVFGG 248 (514)
Q Consensus 222 ~i~~~~FSl~l~~~~~~~~~G~L~fGg 248 (514)
..++||+||.+ .+....|.|+||+
T Consensus 141 --~~~~FSyCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 --SGNKFSYCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp ----SEEEEEB-S--SSSSEEEEEECS
T ss_pred --cCCeEEEECCC-CCCCCCEEEEeCc
Confidence 67899999998 2234589999995
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.79 E-value=1.1e-18 Score=159.04 Aligned_cols=153 Identities=24% Similarity=0.376 Sum_probs=104.7
Q ss_pred ceEEEEceEEECCeeccccCC-------CceEEEcCCCCCcccCHHHHHHHHHHhcCCCcccccchhHHHhhhhHHHHHh
Q 010275 268 YWQFNMGDVLIGGKPTGYCAG-------GCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLL 340 (514)
Q Consensus 268 ~w~v~l~~i~v~g~~~~~~~~-------~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~ 340 (514)
+|.|++.+|+||++.+.+... ...++|||||++++||+++|+++.+++.+..
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~--------------------- 59 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQM--------------------- 59 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHH---------------------
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHh---------------------
Confidence 478999999999999876543 4789999999999999999999999985540
Q ss_pred hhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhcc
Q 010275 341 LFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCD 420 (514)
Q Consensus 341 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 420 (514)
.... .+++.-.....+.||
T Consensus 60 -~~~~------------------------------------------------------------~~~~~~~~~~~~~Cy 78 (161)
T PF14541_consen 60 -GAPG------------------------------------------------------------VSREAPPFSGFDLCY 78 (161)
T ss_dssp -HTCT--------------------------------------------------------------CEE---TT-S-EE
T ss_pred -hhcc------------------------------------------------------------cccccccCCCCCcee
Confidence 0000 000000112345677
Q ss_pred CCCCCCCceeeeCCCCCCCCeEEEEEC-CEEEEeCcccceEeecCCCcceEEEceEeccCCCCCCCcEEeCHhhhcceEE
Q 010275 421 RMPSPMGESAVDCGKLSSMPIVSFTIG-GKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHT 499 (514)
Q Consensus 421 ~~~~~~g~~~~~C~~~~~~P~l~f~f~-g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~ 499 (514)
..+.... + .....+|+|+|+|. |++++|+|++|++...++ ..|+.... . .....+..|||+.+|+++++
T Consensus 79 ~~~~~~~----~-~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~--~~Cla~~~-~--~~~~~~~~viG~~~~~~~~v 148 (161)
T PF14541_consen 79 NLSSFGV----N-RDWAKFPTITLHFEGGADLTLPPENYFVQVSPG--VFCLAFVP-S--DADDDGVSVIGNFQQQNYHV 148 (161)
T ss_dssp EGGCS-E----E-TTEESS--EEEEETTSEEEEE-HHHHEEEECTT--EEEESEEE-E--TSTTSSSEEE-HHHCCTEEE
T ss_pred ecccccc----c-cccccCCeEEEEEeCCcceeeeccceeeeccCC--CEEEEEEc-c--CCCCCCcEEECHHHhcCcEE
Confidence 7654210 0 12248999999996 899999999999997643 78987443 3 12345688999999999999
Q ss_pred EEeCCCCeEEEEE
Q 010275 500 VFDFGELRVGFAE 512 (514)
Q Consensus 500 vfD~~~~riGfa~ 512 (514)
+||.+++||||+|
T Consensus 149 ~fDl~~~~igF~~ 161 (161)
T PF14541_consen 149 VFDLENGRIGFAP 161 (161)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEECCCCEEEEeC
Confidence 9999999999997
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.96 E-value=1.9e-05 Score=64.63 Aligned_cols=92 Identities=20% Similarity=0.328 Sum_probs=65.3
Q ss_pred eEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCeE-EEEEEEEEEE
Q 010275 89 QYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAI-AGFFSYDSVK 167 (514)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~-~G~~~~D~v~ 167 (514)
.|++++.|+ ++++++++|||++.+|+...... .+. . + ........+..++|.. ......+.++
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~---~l~---~--~------~~~~~~~~~~~~~G~~~~~~~~~~~i~ 65 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAE---RLG---L--P------LTLGGKVTVQTANGRVRAARVRLDSLQ 65 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH---HcC---C--C------ccCCCcEEEEecCCCccceEEEcceEE
Confidence 589999999 69999999999999999764221 111 0 0 1122345567777773 4556689999
Q ss_pred EeeeeecCceEEEEEecCCccccccccceeeeccc
Q 010275 168 VGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGF 202 (514)
Q Consensus 168 ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~ 202 (514)
+|+..++++.+.+...... ..+||||+.+
T Consensus 66 ig~~~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 66 IGGITLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred ECCcEEeccEEEEeCCccc------CCceEeChHH
Confidence 9999999998887754321 4689999863
No 28
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=97.47 E-value=0.00013 Score=49.35 Aligned_cols=37 Identities=27% Similarity=0.679 Sum_probs=35.4
Q ss_pred cchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCC
Q 010275 387 MCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMP 423 (514)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 423 (514)
.|..|++++.++++.|..+.|+++|++++.+.|..+|
T Consensus 3 ~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 3 ECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred cchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 6999999999999999999999999999999998875
No 29
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.32 E-value=0.0013 Score=56.75 Aligned_cols=101 Identities=21% Similarity=0.367 Sum_probs=67.8
Q ss_pred EeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCeE-E
Q 010275 80 VALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAI-A 158 (514)
Q Consensus 80 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~-~ 158 (514)
+++....++.|++++.|. ++++.+++|||++.+.+....-. .-..++.. ......+.=+.|.. .
T Consensus 2 ~~i~~~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~-------~Lgl~~~~------~~~~~~~~ta~G~~~~ 66 (121)
T TIGR02281 2 VQLAKDGDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQ-------RLGLDLNR------LGYTVTVSTANGQIKA 66 (121)
T ss_pred EEEEEcCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH-------HcCCCccc------CCceEEEEeCCCcEEE
Confidence 466667789999999997 58999999999999988642110 00111111 12233444455654 3
Q ss_pred EEEEEEEEEEeeeeecCceEEEEEecCCccccccccceeeeccc
Q 010275 159 GFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGF 202 (514)
Q Consensus 159 G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~ 202 (514)
..+.-|.+.+|+..+.|..+.++.... ..+|+||+.+
T Consensus 67 ~~~~l~~l~iG~~~~~nv~~~v~~~~~-------~~~~LLGm~f 103 (121)
T TIGR02281 67 ARVTLDRVAIGGIVVNDVDAMVAEGGA-------LSESLLGMSF 103 (121)
T ss_pred EEEEeCEEEECCEEEeCcEEEEeCCCc-------CCceEcCHHH
Confidence 556889999999999999977664321 1269999964
No 30
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.59 E-value=0.011 Score=47.45 Aligned_cols=88 Identities=19% Similarity=0.258 Sum_probs=53.6
Q ss_pred EEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCe-EEEEEEEEEEEEee
Q 010275 92 GEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA-IAGFFSYDSVKVGD 170 (514)
Q Consensus 92 ~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~-~~G~~~~D~v~ig~ 170 (514)
+++.|+ .+++++++|||++.+.+...-+. .-...+.. ......+.-.+|. .......+.+++|+
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~-------~l~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~i~ig~ 65 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAK-------KLGLKPRP------KSVPISVSGAGGSVTVYRGRVDSITIGG 65 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHH-------HcCCCCcC------CceeEEEEeCCCCEEEEEEEEEEEEECC
Confidence 356777 58999999999998888643321 00011111 1112333334444 34556667899999
Q ss_pred eeecCceEEEEEecCCccccccccceeeecc
Q 010275 171 LVVKDQEFIEATREPGVTFMVAKFDGILGLG 201 (514)
Q Consensus 171 ~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg 201 (514)
..+.+..+.+... ....+||||+-
T Consensus 66 ~~~~~~~~~v~~~-------~~~~~~iLG~d 89 (90)
T PF13650_consen 66 ITLKNVPFLVVDL-------GDPIDGILGMD 89 (90)
T ss_pred EEEEeEEEEEECC-------CCCCEEEeCCc
Confidence 9888888766651 23558999973
No 31
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=96.26 E-value=0.05 Score=54.86 Aligned_cols=194 Identities=20% Similarity=0.273 Sum_probs=102.8
Q ss_pred EEEEEe---cCC-CCeeE-EEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEE--EEEecCCeEEEEEEE
Q 010275 91 YGEIGI---GTP-PQKFT-VIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESA--SIQYGTGAIAGFFSY 163 (514)
Q Consensus 91 ~~~i~i---GtP-~Q~~~-v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~--~~~Yg~G~~~G~~~~ 163 (514)
++.|+| ||- =|++. |++||||.-+=|..+.-... -.+......+ .+... -..|++|..=|.+.+
T Consensus 25 ~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~~----l~~~Lp~~t~-----~g~~laEC~~F~sgytWGsVr~ 95 (370)
T PF11925_consen 25 TVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPSS----LAGSLPQQTG-----GGAPLAECAQFASGYTWGSVRT 95 (370)
T ss_pred eeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhchh----hhccCCcccC-----CCcchhhhhhccCcccccceEE
Confidence 455555 442 24554 99999999887765422100 0001111111 11111 246777776799999
Q ss_pred EEEEEeeeeecCceEEEEEecC-----------C---ccccccccceeeeccccccccC----------------CC---
Q 010275 164 DSVKVGDLVVKDQEFIEATREP-----------G---VTFMVAKFDGILGLGFQEISVG----------------NA--- 210 (514)
Q Consensus 164 D~v~ig~~~i~~~~fg~~~~~~-----------~---~~~~~~~~~GIlGLg~~~~s~~----------------~~--- 210 (514)
.+|+||+....+..+.+..+.. + ..-....++||||+|.-..... ..
T Consensus 96 AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~sa~~~~YY~C~~~~sC 175 (370)
T PF11925_consen 96 ADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQSALPGNYYSCPSGGSC 175 (370)
T ss_pred EEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhcccCCCceEECCCCCCe
Confidence 9999999877777776664321 0 0112446799999997543320 01
Q ss_pred cchHHHHHHcCCCCCCeEEEEecCC---------C---CCCCCceEEECCCCCCC--cccceeEEecccccceEEEEceE
Q 010275 211 VPVWYNMVKQGLIQDPVFSFWLNRN---------Q---QEDEGGEIVFGGVDPNH--YKGKHTYVPVTQKGYWQFNMGDV 276 (514)
Q Consensus 211 ~~~l~~L~~qg~i~~~~FSl~l~~~---------~---~~~~~G~L~fGg~D~~~--~~g~l~~~pv~~~~~w~v~l~~i 276 (514)
.+.-..+-+| +..|+..|-.+.+ + .....|.|+||=-..+. ..+.....+....++...
T Consensus 176 t~t~v~~~~Q--V~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgTQsNN~l~~~~~~~~~~~~G~~tt----- 248 (370)
T PF11925_consen 176 TSTTVPLAQQ--VANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGTQSNNALPSGATVLTTDSNGDFTT----- 248 (370)
T ss_pred ecccchhhhc--ccCcccccCccCCeEEEecCCCCCCCCccceEEEEEecCCcccCcccccceEEeecCCceEEE-----
Confidence 1111112222 5556655532221 1 23468999999422221 223244555556665332
Q ss_pred EECCeeccccCCCceEEEcCCCCCcccCHH
Q 010275 277 LIGGKPTGYCAGGCSAIADSGTSLLAGPTT 306 (514)
Q Consensus 277 ~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~ 306 (514)
..+|.... ...||||+.-.++|+.
T Consensus 249 ~~~G~t~~------~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 249 TFNGQTYS------ASFFDSGSNGYFFPDS 272 (370)
T ss_pred EecCceee------eeeEecCCceeeccCC
Confidence 22343321 2499999999998853
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.39 E-value=0.085 Score=45.56 Aligned_cols=91 Identities=20% Similarity=0.284 Sum_probs=57.5
Q ss_pred cCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEE-EEecCCe--EEEEEE
Q 010275 86 MDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESAS-IQYGTGA--IAGFFS 162 (514)
Q Consensus 86 ~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~-~~Yg~G~--~~G~~~ 162 (514)
....+++++.|+ ++++.+++|||++..++....+. .+.- ..... ..+. ...+.|. ..|...
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~---~lgl----~~~~~-------~~~~~~~~g~g~~~~~g~~~ 76 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAE---KCGL----MRLID-------KRFQGIAKGVGTQKILGRIH 76 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHH---HcCC----ccccC-------cceEEEEecCCCcEEEeEEE
Confidence 356789999998 58999999999999998643221 1111 00011 1111 2233232 467777
Q ss_pred EEEEEEeeeeecCceEEEEEecCCccccccccceeeecc
Q 010275 163 YDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLG 201 (514)
Q Consensus 163 ~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg 201 (514)
.+.+.+++...+ ..|.+... ...|+|||+-
T Consensus 77 ~~~l~i~~~~~~-~~~~Vl~~--------~~~d~ILG~d 106 (124)
T cd05479 77 LAQVKIGNLFLP-CSFTVLED--------DDVDFLIGLD 106 (124)
T ss_pred EEEEEECCEEee-eEEEEECC--------CCcCEEecHH
Confidence 889999998765 66655532 2458999995
No 33
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=95.18 E-value=0.01 Score=38.98 Aligned_cols=34 Identities=44% Similarity=1.022 Sum_probs=32.0
Q ss_pred ccchhHHHhhhhHHHHHhhhccCcccccccCccc
Q 010275 323 QQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLC 356 (514)
Q Consensus 323 ~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c 356 (514)
..|+.++++|++.+++.+.+.++|+.+|...|+|
T Consensus 2 ~~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C 35 (35)
T PF03489_consen 2 DECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred cHHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence 3599999999999999999999999999999988
No 34
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=94.24 E-value=0.34 Score=44.92 Aligned_cols=92 Identities=15% Similarity=0.237 Sum_probs=68.2
Q ss_pred CCceeEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecC
Q 010275 75 EDTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGT 154 (514)
Q Consensus 75 ~~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~ 154 (514)
++...+.|....++-|.++..|- +|++..++|||-+.+.+...+-. .--++... .+.++.+.=++
T Consensus 91 ~g~~~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~-------RlGid~~~------l~y~~~v~TAN 155 (215)
T COG3577 91 DGYQEVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR-------RLGIDLNS------LDYTITVSTAN 155 (215)
T ss_pred CCceEEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH-------HhCCCccc------cCCceEEEccC
Confidence 35567888888899999999997 69999999999999888654321 12344332 23456666678
Q ss_pred CeEE-EEEEEEEEEEeeeeecCceEEEE
Q 010275 155 GAIA-GFFSYDSVKVGDLVVKDQEFIEA 181 (514)
Q Consensus 155 G~~~-G~~~~D~v~ig~~~i~~~~fg~~ 181 (514)
|... ..+-.|.|.||+..+.|+.--++
T Consensus 156 G~~~AA~V~Ld~v~IG~I~~~nV~A~V~ 183 (215)
T COG3577 156 GRARAAPVTLDRVQIGGIRVKNVDAMVA 183 (215)
T ss_pred CccccceEEeeeEEEccEEEcCchhhee
Confidence 8764 56788999999999888765444
No 35
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.15 E-value=0.27 Score=42.38 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.8
Q ss_pred CcEEeCHhhhcceEEEEeCCCCeEEE
Q 010275 485 PLWILGDVFMGRYHTVFDFGELRVGF 510 (514)
Q Consensus 485 ~~~iLG~~fl~~~y~vfD~~~~riGf 510 (514)
...|||..||+.+-.+.|+.+.+|-|
T Consensus 99 ~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 99 VDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred cCEEecHHHHHhCCeEEECCCCEEEC
Confidence 35699999999999999999998753
No 36
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=93.51 E-value=0.26 Score=39.84 Aligned_cols=75 Identities=13% Similarity=0.097 Sum_probs=46.1
Q ss_pred EEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCe---EEEEEEEEEE
Q 010275 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA---IAGFFSYDSV 166 (514)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~---~~G~~~~D~v 166 (514)
|++.+.|+ ++++.+++||||+..++....+. ....+.. ......+.-.+|. ..|.. .+.+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~~~--------~lg~~~~------~~~~~~v~~a~G~~~~~~G~~-~~~v 63 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKTWR--------KLGSPPL------KPTKKRLRTATGTKLSVLGQI-LVTV 63 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHHHH--------HhCCCcc------ccccEEEEecCCCEeeEeEEE-EEEE
Confidence 57889998 59999999999999999754431 0111101 1122333334443 35766 7899
Q ss_pred EEeeeeecCceEEEEE
Q 010275 167 KVGDLVVKDQEFIEAT 182 (514)
Q Consensus 167 ~ig~~~i~~~~fg~~~ 182 (514)
++++.+. ...|-+..
T Consensus 64 ~~~~~~~-~~~~~v~~ 78 (91)
T cd05484 64 KYGGKTK-VLTLYVVK 78 (91)
T ss_pred EECCEEE-EEEEEEEE
Confidence 9998763 35554443
No 37
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=93.07 E-value=0.25 Score=43.38 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=24.7
Q ss_pred cEEeCHhhhcceEEEEeCCCCeEEEEE
Q 010275 486 LWILGDVFMGRYHTVFDFGELRVGFAE 512 (514)
Q Consensus 486 ~~iLG~~fl~~~y~vfD~~~~riGfa~ 512 (514)
..|||.++|+.+....|+.+++|-|-.
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 579999999999999999999998853
No 38
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=92.30 E-value=2 Score=36.85 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=27.4
Q ss_pred cccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHH
Q 010275 265 QKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (514)
Q Consensus 265 ~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l 311 (514)
..+++.+. +.++|..+ .++||||++.+.++.+..+++
T Consensus 8 ~~g~~~v~---~~InG~~~-------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNV-------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 34555444 56777754 389999999999999987765
No 39
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=90.32 E-value=1.3 Score=35.37 Aligned_cols=81 Identities=20% Similarity=0.202 Sum_probs=46.5
Q ss_pred EEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCeEEEEE-EEE-EEEEee
Q 010275 93 EIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFF-SYD-SVKVGD 170 (514)
Q Consensus 93 ~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~~G~~-~~D-~v~ig~ 170 (514)
.+.|. ++++.+++|||++.+-+....+. .. ....+...+.=.+|.....+ ..+ .+.+|+
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~a~---~~--------------~~~~~~~~v~gagG~~~~~v~~~~~~v~vg~ 62 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDLGP---KQ--------------ELSTTSVLIRGVSGQSQQPVTTYRTLVDLGG 62 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHHhh---hc--------------cCCCCcEEEEeCCCcccccEEEeeeEEEECC
Confidence 35565 58999999999999999765442 00 01122333333334321111 123 699999
Q ss_pred eeecCceEEEEEecCCccccccccceeeeccc
Q 010275 171 LVVKDQEFIEATREPGVTFMVAKFDGILGLGF 202 (514)
Q Consensus 171 ~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~ 202 (514)
....+ .|...... .++|||+-+
T Consensus 63 ~~~~~-~~~v~~~~---------~~~lLG~df 84 (86)
T cd06095 63 HTVSH-SFLVVPNC---------PDPLLGRDL 84 (86)
T ss_pred EEEEE-EEEEEcCC---------CCcEechhh
Confidence 88875 35444221 268999854
No 40
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=86.62 E-value=4.3 Score=33.98 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=20.7
Q ss_pred CcEEeCHhhhcceEEEEeCCCCeE
Q 010275 485 PLWILGDVFMGRYHTVFDFGELRV 508 (514)
Q Consensus 485 ~~~iLG~~fl~~~y~vfD~~~~ri 508 (514)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 356999999999999999988753
No 41
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=85.75 E-value=0.87 Score=34.77 Aligned_cols=37 Identities=32% Similarity=0.753 Sum_probs=35.5
Q ss_pred cchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCC
Q 010275 387 MCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMP 423 (514)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 423 (514)
.|..|+.++..++..+..+.+++.+.+++.+.|..++
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~ 38 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLP 38 (76)
T ss_pred cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcC
Confidence 5999999999999999999999999999999999987
No 42
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=83.57 E-value=1.6 Score=33.62 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=29.0
Q ss_pred cCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCC
Q 010275 86 MDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNC 121 (514)
Q Consensus 86 ~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C 121 (514)
..+.+++.+.|| ++.+..++|||++...++...+
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 367899999999 4999999999999998876443
No 43
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=82.41 E-value=2.2 Score=40.40 Aligned_cols=87 Identities=24% Similarity=0.471 Sum_probs=65.9
Q ss_pred cchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHHHHHhh
Q 010275 324 QCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQ 403 (514)
Q Consensus 324 ~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (514)
.|..+++.|.+.+++.+.++..|+.+|...++|+-. + +.-..+.+.++| ...|-.|-..+.+..-.|.
T Consensus 78 ~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~~~-~-----~~~~~~~~~~~~------~~~C~~C~~~V~~~~~~l~ 145 (218)
T KOG1340|consen 78 ECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCSAS-A-----GPVSEVFASQPA------AGECELCRETVTEADTKLQ 145 (218)
T ss_pred HHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCCcc-c-----chhhhhhhhccc------ccccHHHHHHHHHHHHhcc
Confidence 799999999999999999999999999999999851 1 111112222222 6789999999999998888
Q ss_pred h-chhHHHHHHHhhhhccCC
Q 010275 404 Q-NQTQENILQYVNELCDRM 422 (514)
Q Consensus 404 ~-~~~~~~~~~~~~~~c~~~ 422 (514)
. +.++..+..-..+.|..+
T Consensus 146 d~~~~k~~~~~~~~~~ck~l 165 (218)
T KOG1340|consen 146 DKPKTKGKIVSLLLKSCKSL 165 (218)
T ss_pred cchhHHHHHHHHHHhhccCC
Confidence 8 666666666666667433
No 44
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=81.28 E-value=1.2 Score=36.48 Aligned_cols=23 Identities=26% Similarity=0.124 Sum_probs=12.7
Q ss_pred CCCcccHHHHHHHHHHHHHHHhh
Q 010275 1 MGTKIRAVPLSLFLSSLLFSLVA 23 (514)
Q Consensus 1 m~~~~~~~~~~~~~~~~l~~~~~ 23 (514)
|++|.++++.++++++||.++..
T Consensus 1 MaSK~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhh
Confidence 89777555555554444444333
No 45
>PF13650 Asp_protease_2: Aspartyl protease
Probab=76.31 E-value=2.7 Score=33.13 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=23.5
Q ss_pred EEECCeeccccCCCceEEEcCCCCCcccCHHHHHHH
Q 010275 276 VLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (514)
Q Consensus 276 i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l 311 (514)
+.++|+.+ .+++|||++.+.++++.++++
T Consensus 3 v~vng~~~-------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-------EEEEcCCCCcEEECHHHHHHc
Confidence 56677654 399999999999999888776
No 46
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=72.75 E-value=11 Score=33.87 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=21.8
Q ss_pred CceEEEcCCCCCcccCHHHHHHHHHHh
Q 010275 289 GCSAIADSGTSLLAGPTTVITMINHAI 315 (514)
Q Consensus 289 ~~~aiiDSGtt~i~lP~~~~~~l~~~i 315 (514)
...+++|||++..++-.++.+.|.-..
T Consensus 45 ~i~vLfDSGSPTSfIr~di~~kL~L~~ 71 (177)
T PF12384_consen 45 PIKVLFDSGSPTSFIRSDIVEKLELPT 71 (177)
T ss_pred EEEEEEeCCCccceeehhhHHhhCCcc
Confidence 455999999999999999888774443
No 47
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=72.23 E-value=5.4 Score=30.65 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.1
Q ss_pred EEECCeeccccCCCceEEEcCCCCCcccCHHHHHHH
Q 010275 276 VLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (514)
Q Consensus 276 i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l 311 (514)
+.+++..+. +++|||++-.+++.+..+.+
T Consensus 13 ~~I~g~~~~-------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK-------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE-------EEEeCCCcceecCHHHHHHh
Confidence 456776553 99999999999999998887
No 48
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=72.11 E-value=4.7 Score=32.85 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=23.5
Q ss_pred EEEEEecCCCCeeEEEecCCCCceeEeCCCC
Q 010275 91 YGEIGIGTPPQKFTVIFDTGSSNLWVPSTNC 121 (514)
Q Consensus 91 ~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C 121 (514)
+.+|.|. ++++.+++||||+.+.++...+
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccccc
Confidence 5677787 4899999999999998876543
No 49
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=69.89 E-value=5.3 Score=32.08 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=25.0
Q ss_pred eEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHH
Q 010275 275 DVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (514)
Q Consensus 275 ~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l 311 (514)
.+.|+|+.+. +++|||++...++++.+..+
T Consensus 4 ~~~Ing~~i~-------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK-------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE-------EEEcCCcceEEeCHHHHHHh
Confidence 3567887664 89999999999999988765
No 50
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=65.12 E-value=7.9 Score=30.79 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=22.9
Q ss_pred EEECCeeccccCCCceEEEcCCCCCcccCHHHHHHH
Q 010275 276 VLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (514)
Q Consensus 276 i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l 311 (514)
+.+++..+ .+++|||++.+.++.+..+.+
T Consensus 7 v~i~~~~~-------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQPV-------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 56676554 399999999999999877665
No 51
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=63.92 E-value=4.2 Score=30.83 Aligned_cols=37 Identities=49% Similarity=0.984 Sum_probs=33.1
Q ss_pred cccccchhHHHhhhhHHHHHhhhccCcccccccCccc
Q 010275 320 VVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLC 356 (514)
Q Consensus 320 ~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c 356 (514)
.+...|..+++.|.+.+++.+.....|+.+|...|.|
T Consensus 40 ~~~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C 76 (76)
T smart00741 40 SLSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 3566799999999999999999999999999998887
No 52
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=60.44 E-value=8.7 Score=30.55 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=24.0
Q ss_pred EEECCeeccccCCCceEEEcCCCCCcccCHHHHHHH
Q 010275 276 VLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (514)
Q Consensus 276 i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l 311 (514)
+.+||..+. +++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~-------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-------EEEECCCCeEEECHHHhhhc
Confidence 566777653 89999999999999988775
No 53
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=60.40 E-value=7 Score=24.39 Aligned_cols=24 Identities=38% Similarity=0.266 Sum_probs=15.9
Q ss_pred eEEEeeeeccCChhhhhhhchhhh
Q 010275 30 LVRIGLKKMKLDPNNRLAARLESE 53 (514)
Q Consensus 30 ~~~ipl~~~~~~~~~~~~~~~~~~ 53 (514)
++||||+|.++.++...+.++..+
T Consensus 1 l~rIPL~K~kS~R~~L~e~g~~~~ 24 (29)
T PF07966_consen 1 LVRIPLKKFKSMRETLREKGTLEE 24 (29)
T ss_dssp -EEEEEEE---HHHHHHHTT-HHH
T ss_pred CEEEeccCCchHHHHHHHcCchHH
Confidence 479999999999988887777655
No 54
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=57.93 E-value=12 Score=30.07 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=21.5
Q ss_pred EEEecCCCCeeEEEecCCCCceeEeCCC
Q 010275 93 EIGIGTPPQKFTVIFDTGSSNLWVPSTN 120 (514)
Q Consensus 93 ~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~ 120 (514)
.+.|+ +|.+.+++|||++++.+....
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~~ 27 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEND 27 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEcccc
Confidence 45666 699999999999999997544
No 55
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=56.52 E-value=9.1 Score=36.32 Aligned_cols=47 Identities=26% Similarity=0.553 Sum_probs=40.3
Q ss_pred HHhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccC
Q 010275 313 HAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFD 359 (514)
Q Consensus 313 ~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~ 359 (514)
+..+.-.++...|++++..|.+.++..+...++++.+|.+.|.|+-.
T Consensus 160 ~~ck~l~~~~~~Ck~fV~~y~p~~i~~l~~~~~p~~vC~~l~~C~~~ 206 (218)
T KOG1340|consen 160 KSCKSLPNYEQKCKQFVHEYGPQLITLLEEGLDPHDVCTALGACPPA 206 (218)
T ss_pred hhccCCccchhHHHHHHHHhccHHHHHHHHhhCchhHHHHhhcCCcc
Confidence 33445556677899999999999999999999999999999999944
No 56
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=54.87 E-value=21 Score=30.78 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=42.6
Q ss_pred CceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCe--EEEEEEEE
Q 010275 87 DAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA--IAGFFSYD 164 (514)
Q Consensus 87 ~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~--~~G~~~~D 164 (514)
....|+++.|+ ++++++++|||...+-+.. .|. ..|.-...-+.. .-...+|-|. +.|.+..-
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~-~~a--~r~gL~~lid~r----------~~g~a~GvG~~~i~G~Ih~~ 86 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSK-SCA--ERCGLMRLIDKR----------FAGVAKGVGTQKILGRIHSV 86 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEH-HHH--HHTTGGGGEEGG----------G-EE-------EEEEEEEEE
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCH-HHH--HHcCChhhcccc----------ccccccCCCcCceeEEEEEE
Confidence 35689999999 5999999999998888753 332 345422111111 0012344454 67888888
Q ss_pred EEEEeeeeecCceEEEE
Q 010275 165 SVKVGDLVVKDQEFIEA 181 (514)
Q Consensus 165 ~v~ig~~~i~~~~fg~~ 181 (514)
.+.+|+..++ ..|-+.
T Consensus 87 ~l~ig~~~~~-~s~~Vl 102 (124)
T PF09668_consen 87 QLKIGGLFFP-CSFTVL 102 (124)
T ss_dssp EEEETTEEEE-EEEEEE
T ss_pred EEEECCEEEE-EEEEEe
Confidence 8888886554 444443
No 57
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=53.05 E-value=24 Score=33.05 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=32.8
Q ss_pred CCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEE
Q 010275 438 SMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGF 510 (514)
Q Consensus 438 ~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGf 510 (514)
..+.+.+.++|..|.+| +++.. +.+-..|||++|+|.|+=...+. .+|-|
T Consensus 66 ~~~~~~i~I~~~~F~IP---~iYq~-------------------~~g~d~IlG~NF~r~y~Pfiq~~-~~I~f 115 (201)
T PF02160_consen 66 KAKNGKIQIADKIFRIP---TIYQQ-------------------ESGIDIILGNNFLRLYEPFIQTE-DRIQF 115 (201)
T ss_pred EecCceEEEccEEEecc---EEEEe-------------------cCCCCEEecchHHHhcCCcEEEc-cEEEE
Confidence 44678888888888774 12211 12346799999999887666664 35555
No 58
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=44.36 E-value=15 Score=29.74 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=20.2
Q ss_pred EEECCeeccccCCCceEEEcCCCCCcccCHHHH
Q 010275 276 VLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVI 308 (514)
Q Consensus 276 i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~ 308 (514)
+.++|..+. ++||||+..+.++.+.+
T Consensus 10 v~i~g~~i~-------~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 10 VKINGKKIK-------ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEETTEEEE-------EEEETTBSSEEESSGGS
T ss_pred EeECCEEEE-------EEEecCCCcceeccccc
Confidence 556666553 99999999999997643
No 59
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=42.23 E-value=1.2e+02 Score=26.35 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=23.5
Q ss_pred eEEEEEEecCCCCeeEEEecCCCCceeEeC
Q 010275 89 QYYGEIGIGTPPQKFTVIFDTGSSNLWVPS 118 (514)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~ 118 (514)
.-.+.+.|.+ ++..+++|+|++.-++..
T Consensus 21 vi~g~~~I~~--~~~~vLiDSGAThsFIs~ 48 (135)
T PF08284_consen 21 VITGTFLINS--IPASVLIDSGATHSFISS 48 (135)
T ss_pred eEEEEEEecc--EEEEEEEecCCCcEEccH
Confidence 4567788885 899999999999998864
No 60
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=41.25 E-value=24 Score=28.60 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=19.3
Q ss_pred eEEEcCCCCCcccCHHHHHHHH
Q 010275 291 SAIADSGTSLLAGPTTVITMIN 312 (514)
Q Consensus 291 ~aiiDSGtt~i~lP~~~~~~l~ 312 (514)
.+.+|||++...+|...++.+-
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 4899999999999998887764
No 61
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=37.25 E-value=34 Score=29.50 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=22.9
Q ss_pred eEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHH
Q 010275 275 DVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (514)
Q Consensus 275 ~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l 311 (514)
.+++||..+. |+||||+..+.++.+.++++
T Consensus 28 ~~~ing~~vk-------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK-------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE-------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE-------EEEeCCCCccccCHHHHHHc
Confidence 3567887764 99999999999999888774
No 62
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=37.06 E-value=42 Score=30.28 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=22.1
Q ss_pred EEEEEecCCCCeeEEEecCCCCceeEeCC
Q 010275 91 YGEIGIGTPPQKFTVIFDTGSSNLWVPST 119 (514)
Q Consensus 91 ~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~ 119 (514)
...+.++.-..++.++|||||+.-++...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 34455555568999999999999888653
No 63
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=35.00 E-value=24 Score=30.21 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=18.1
Q ss_pred EEEcCCCC-CcccCHHHHHHH
Q 010275 292 AIADSGTS-LLAGPTTVITMI 311 (514)
Q Consensus 292 aiiDSGtt-~i~lP~~~~~~l 311 (514)
.++|||.+ ++.+|.++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 58999999 999999998876
No 64
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=30.64 E-value=57 Score=30.61 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=28.1
Q ss_pred ccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHH
Q 010275 266 KGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (514)
Q Consensus 266 ~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l 311 (514)
.+++.++ ..|||+.+. .++|||.|.+.++++..+.+
T Consensus 103 ~GHF~a~---~~VNGk~v~-------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD-------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEEE---EEECCEEEE-------EEEecCcceeecCHHHHHHh
Confidence 4454443 578888775 89999999999999887775
No 65
>PRK02710 plastocyanin; Provisional
Probab=29.40 E-value=67 Score=27.25 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=20.6
Q ss_pred CCCcccHHHHHHHHHHHHHHHhhhhcCCceEEEee
Q 010275 1 MGTKIRAVPLSLFLSSLLFSLVASVSNDGLVRIGL 35 (514)
Q Consensus 1 m~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~ipl 35 (514)
|.++.+++++.++++++.+++.++.+.+..++|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~V~~ 35 (119)
T PRK02710 1 MAKRLRSIAAALVAVVSSFGLGVSSASAETVEVKM 35 (119)
T ss_pred CchhHHHHHHHHHHHHHHHHhcccccccceEEEEE
Confidence 66777777666666555444444444555666654
No 66
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=27.93 E-value=62 Score=26.92 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=39.0
Q ss_pred EEEEecCCCC----eeEEEecCCCCcee-EeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCe-EEEEEEEEE
Q 010275 92 GEIGIGTPPQ----KFTVIFDTGSSNLW-VPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA-IAGFFSYDS 165 (514)
Q Consensus 92 ~~i~iGtP~Q----~~~v~lDTGSs~~W-v~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~-~~G~~~~D~ 165 (514)
+++.|..|.| ++.+++|||.+..- ++...- ..-...+.. .....-++|. +.-....++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a-------~~lgl~~~~---------~~~~~tA~G~~~~~~v~~~~ 65 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIV-------NKLGLPELD---------QRRVYLADGREVLTDVAKAS 65 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHH-------HHcCCCccc---------CcEEEecCCcEEEEEEEEEE
Confidence 5778888732 78899999998764 443211 001112111 1234445664 455677888
Q ss_pred EEEeeeee
Q 010275 166 VKVGDLVV 173 (514)
Q Consensus 166 v~ig~~~i 173 (514)
+.+++...
T Consensus 66 v~igg~~~ 73 (107)
T TIGR03698 66 IIINGLEI 73 (107)
T ss_pred EEECCEEE
Confidence 99988765
No 67
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=24.59 E-value=2.9e+02 Score=22.29 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=18.0
Q ss_pred CeeEEEecCCCCceeEeCCCCC
Q 010275 101 QKFTVIFDTGSSNLWVPSTNCY 122 (514)
Q Consensus 101 Q~~~v~lDTGSs~~Wv~~~~C~ 122 (514)
....+++|||+....+|.+.|.
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CCcEEEEeCCCceEeecccccc
Confidence 4578999999999999976653
Done!