BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010276
(514 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FFL|A Chain A, Crystal Structure Of The N-Terminal Domain Of
Anaphase-Promoting Complex Subunit 7
pdb|3FFL|B Chain B, Crystal Structure Of The N-Terminal Domain Of
Anaphase-Promoting Complex Subunit 7
pdb|3FFL|C Chain C, Crystal Structure Of The N-Terminal Domain Of
Anaphase-Promoting Complex Subunit 7
pdb|3FFL|D Chain D, Crystal Structure Of The N-Terminal Domain Of
Anaphase-Promoting Complex Subunit 7
Length = 167
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 38 SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQXXXXXXXXXXXXXXXXXX 97
SP K + L+ DSLF D+EYR A+ Y ALQ K + K
Sbjct: 58 SPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQC 117
Query: 98 XXXXXXAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYR 152
+E EVKYK+A C+ L + K AI ++GIPS+ R ++++L+A LY+
Sbjct: 118 LP------SEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLYK 166
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 7/206 (3%)
Query: 315 SRPEVFVALSVLWERKDERG----ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV 370
++P VA S L + +G A+ + EK++ +D + YI GN+L + + AV
Sbjct: 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223
Query: 371 IAFRGAQELRPDLRSYQG-LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS 429
A+ A L P+ G L Y + + A+ R A++ P A + +
Sbjct: 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283
Query: 430 NASGREKAKKFYESALRLEPGYXXXXXXXXXXHVIEGRNGDAVSLLERYLKDWAD-DSLH 488
S E A+ Y +ALRL P + +G +AV L + L+ + + + H
Sbjct: 284 KGSVAE-AEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342
Query: 489 VKLAQVFAATNMLQEALSHYEAALRL 514
LA V LQEAL HY+ A+R+
Sbjct: 343 SNLASVLQQQGKLQEALMHYKEAIRI 368
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 313 DPSRPEVFVALSVLW-ERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVI 371
+P E + L ++ ER + A+ + ++R+ I GYI L++ E AV
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 372 AFRGAQELRPDLRSYQGLVHSYLQ-FSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN 430
A+ A + PDL + + + L+ +++EA +A++ P A A +G V N
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVF--N 180
Query: 431 ASGR-EKAKKFYESALRLEPGY 451
A G A +E A+ L+P +
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNF 202
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 8/122 (6%)
Query: 310 LSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRP--- 366
+ + P P+ + L+ E+G+++ AE R P + N L ++KR
Sbjct: 264 IELQPHFPDAYCNLA---NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320
Query: 367 -EAAVIAFRGAQELRPDLRSYQGLVHSYLQF-SKVKEALYAAREAMKAMPQSAKALKLVG 424
E AV +R A E+ P+ + + S LQ K++EAL +EA++ P A A +G
Sbjct: 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380
Query: 425 DV 426
+
Sbjct: 381 NT 382
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 230 DYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEY 289
DY +E + + L+ P + + G DEAI ++K +DP
Sbjct: 16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 75
Query: 290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL-SVLWERKDERGALSYAEKSIRIDER 348
+ DY + + L +DP E + L + +++ D A+ Y +K++ +D R
Sbjct: 76 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
>pdb|3URZ|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacova_03105)
From Bacteroides Ovatus Atcc 8483 At 2.19 A Resolution
pdb|3URZ|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacova_03105)
From Bacteroides Ovatus Atcc 8483 At 2.19 A Resolution
Length = 208
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 175 IEAITALAELGATPKDIISLFAQTP----NRSGRAPFDHLDSSRWLHRYVEAQCCIA--- 227
++ ++A E G + +S F QT +R+ + ++D + + + + +A
Sbjct: 8 LQKVSAAIEAGQNGQ-AVSYFRQTIALNIDRTEXYYWTNVDKNSEISSKLATELALAYKK 66
Query: 228 SNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT--- 284
+ +Y + ELLQ+ PNN+ L A+ G+ +A+ +EK+ ++ +
Sbjct: 67 NRNYDKAYLFYKELLQKAPNNVDXLEACAEXQVCRGQEKDALRXYEKILQLEADNLAANI 126
Query: 285 YMDEYAMLL------KVKCDYSKLS 303
++ Y L K++ DY KLS
Sbjct: 127 FLGNYYYLTAEQEKKKLETDYKKLS 151
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325
D A+ +++K + +DP MTY+ A + K DY+K +L + + E + ++
Sbjct: 21 DTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80
Query: 326 LWER 329
+ R
Sbjct: 81 AYAR 84
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325
D A+ +++K + +DP MTY+ A + K DY+K +L + + E + ++
Sbjct: 21 DTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80
Query: 326 LWER 329
+ R
Sbjct: 81 AYAR 84
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 34/90 (37%)
Query: 230 DYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEY 289
DY +E + + L+ PNN + G DEAI ++K +DP
Sbjct: 24 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83
Query: 290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPEV 319
+ DY + + L +DP+ E
Sbjct: 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 11/170 (6%)
Query: 115 ASCHFALGETKAAIVEMEGIPS-KARNLQMSLLMAKLYRNSRHNRGAVACYKECLR---- 169
A C GE + AI +++ K+ N + ++ LY + +++ +ECL+
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220
Query: 170 --HCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSS--RWLHRYVEAQCC 225
C + + L +L + +++I T S + S + R E C
Sbjct: 221 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVXKTEPSVAEYTVRSKERICH 280
Query: 226 IASNDYK--GGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFE 273
S D K + + +E+LQ P+N++ L + A+ I DEAI ++E
Sbjct: 281 CFSKDEKPVEAIRICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYE 330
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
Query: 358 NLLLSMKRP----EAAVIAFRGAQELRPDLRSYQGLVHSYLQF-SKVKEALYAAREAMKA 412
N L ++KR E AV +R A E+ P+ + + S LQ K++EAL +EA++
Sbjct: 13 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 72
Query: 413 MPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYXXXXXXXXXXHVIEGRNGDAV 472
P A A +G+ + A + Y A+++ P + H G +A+
Sbjct: 73 SPTFADAYSNMGNT-LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAI 131
Query: 473 SLLERYLK 480
+ LK
Sbjct: 132 ASYRTALK 139
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 324 SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL 383
SVL ++ + AL + +++IRI Y GN L M+ + A+ + A ++ P
Sbjct: 51 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 110
Query: 384 -RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKA 419
++ L + + EA+ + R A+K P A
Sbjct: 111 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 465 EGRNGDAVSLLERYLKDWAD-DSLHVKLAQVFAATNMLQEALSHYEAALRL 514
+G +AV L + L+ + + + H LA V LQEAL HY+ A+R+
Sbjct: 22 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 72
>pdb|3ZN3|A Chain A, N-terminal Domain Of S. Pombe Cdc23 Apc Subunit
Length = 291
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 11/135 (8%)
Query: 146 LMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRA 205
L +YR + + A+ K C+ PFF A L+ + + + ++ +Q P+
Sbjct: 161 LSGVVYRKRKQDSKAIDFLKSCVLKAPFFWSAWLELSLSIDSLETLTTVVSQLPSTHIMT 220
Query: 206 PFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKN 265
++ +S LH+ + S+ Y+ E AE++ FPN+ ++ + A +
Sbjct: 221 KIFYVYASHELHQ-------VNSSAYEKLAE--AEII--FPNSRYLKTQRALLTYDSRDF 269
Query: 266 DEAILNFEKVRSIDP 280
DEA FE + + DP
Sbjct: 270 DEAESLFENILTNDP 284
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325
D A+ +++K + +DP MTY+ A + K DY+K +L + + E + ++
Sbjct: 21 DTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRMIAY 80
Query: 326 LWER 329
+ R
Sbjct: 81 AYAR 84
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP 381
AL + IR+D + I GYI K L++M+ A A+ A ++ P
Sbjct: 66 ALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDP 112
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 16/204 (7%)
Query: 115 ASCHFALGETKAAIVEMEGIPS-KARNLQMSLLMAKLYRNSRHNRGAVACYKECLR---- 169
A C GE + AI +++ K N + ++ LY + +++ +ECL+
Sbjct: 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243
Query: 170 --HCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSS--RWLHRYVEAQCC 225
C + + L +L + +++I T S + S + R E C
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICH 303
Query: 226 IASNDYK--GGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVR---SIDP 280
S D K + + +E+LQ P+N++ L + A+ I DEAI ++E + D
Sbjct: 304 CFSKDEKPVEAIRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQ 363
Query: 281 YIMTYMDEYAMLLK--VKCDYSKL 302
I +++ LLK K DY K+
Sbjct: 364 QIREGLEKAQRLLKQSQKRDYYKI 387
>pdb|2YVV|A Chain A, Crystal Structure Of Hyluranidase Complexed With Lactose
At 2.6 A Resolution Reveals Three Specific Sugar
Recognition Sites
pdb|2YW0|A Chain A, Crystal Structure Of Hyluranidase Trimer At 2.6 A
Resolution
pdb|2YX2|A Chain A, Crystal Structure Of Cloned Trimeric Hyluranidase From
Streptococcus Pyogenes At 2.8 A Resolution
Length = 338
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 11/161 (6%)
Query: 297 CDYSKLSKLVHDLLSIDPSRPEVFVALSV---LWERKDERGALSYAEKSIRIDER-HIPG 352
D +S L ++LL+ P+ + + L ++ D+ + AE +D++ ++ G
Sbjct: 50 SDLGYISPLDYNLLTNKPNIDGLATKVETAQKLQQKADKETVYTKAESKQELDKKLNLKG 109
Query: 353 YIMKGNLLLSMKRPEAAVIAFRGAQ--ELRPDLRSYQGL-VHSYLQFSKVKEALYAAREA 409
+M G L K AA +A+ + + DL S +G V Y L + R
Sbjct: 110 GVMTGQL----KFKPAATVAYSSSTGGAVNIDLSSTRGAGVVVYSDNDTSDGPLMSLRTG 165
Query: 410 MKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450
+ QSA + G +A N + R+ + SAL + G
Sbjct: 166 KETFNQSALFVDYKGTTNAVNIAMRQPTTPNFSSALNITSG 206
>pdb|3EKA|A Chain A, Crystal Structure Of The Complex Of Hyaluranidase Trimer
With Ascorbic Acid At 3.1 A Resolution Reveals The
Locations Of Three Binding Sites
Length = 332
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 11/161 (6%)
Query: 297 CDYSKLSKLVHDLLSIDPSRPEVFVALSV---LWERKDERGALSYAEKSIRIDER-HIPG 352
D +S L ++LL+ P+ + + L ++ D+ + AE +D++ ++ G
Sbjct: 44 SDLGYISPLDYNLLTNKPNIDGLATKVETAQKLQQKADKETVYTKAESKQELDKKLNLKG 103
Query: 353 YIMKGNLLLSMKRPEAAVIAFRGAQ--ELRPDLRSYQGL-VHSYLQFSKVKEALYAAREA 409
+M G L K AA +A+ + + DL S +G V Y L + R
Sbjct: 104 GVMTGQL----KFKPAATVAYSSSTGGAVNIDLSSTRGAGVVVYSDNDTSDGPLMSLRTG 159
Query: 410 MKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450
+ QSA + G +A N + R+ + SAL + G
Sbjct: 160 KETFNQSALFVDYKGTTNAVNIAMRQPTTPNFSSALNITSG 200
>pdb|2C3F|A Chain A, The Structure Of A Group A Streptococcal Phage-Encoded
Tail-Fibre Showing Hyaluronan Lyase Activity
Length = 358
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 11/161 (6%)
Query: 297 CDYSKLSKLVHDLLSIDPSRPEVFVALSV---LWERKDERGALSYAEKSIRIDER-HIPG 352
D +S L ++LL+ P+ + + L ++ D+ + AE +D++ ++ G
Sbjct: 71 SDLGYISPLDYNLLTNKPNIDGLATKVETAQKLQQKADKETVYTKAESKQELDKKLNLKG 130
Query: 353 YIMKGNLLLSMKRPEAAVIAFRGAQ--ELRPDLRSYQGL-VHSYLQFSKVKEALYAAREA 409
+M G L K AA +A+ + + DL S +G V Y L + R
Sbjct: 131 GVMTGQL----KFKPAATVAYSSSTGGAVNIDLSSTRGAGVVVYSDNDTSDGPLMSLRTG 186
Query: 410 MKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450
+ QSA + G +A N + R+ + SAL + G
Sbjct: 187 KETFNQSALFVDYKGTTNAVNIAMRQPTTPNFSSALNITSG 227
>pdb|2DP5|A Chain A, Structure Of Streptococcus Pyogenes
Bacteriophage-associated Hyaluronate Lyase Hylp2
Length = 332
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 297 CDYSKLSKLVHDLLSIDPSRPEVFVALSV---LWERKDERGALSYAEKSIRIDER-HIPG 352
D +S L ++LL+ P+ + + L ++ D+ + AE +D++ ++ G
Sbjct: 44 SDLGYISPLDYNLLTNKPNIDGLATKVETAQKLQQKADKETVYTKAESKQELDKKLNLKG 103
Query: 353 YIMKGNLLLSMKRPEAAVIAFRGAQ--ELRPDLRSYQGL-VHSYLQFSKVKEALYAAREA 409
+M G L K AA +A+ + + DL S +G V Y L + R
Sbjct: 104 GVMTGQL----KFKPAATVAYSSSTGGAVNIDLSSTRGAGVVVYSDNDTSDGPLMSLRTG 159
Query: 410 MKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450
+ QSA + G +A N + R + SAL + G
Sbjct: 160 KETFNQSALFVDYKGTTNAVNIAMRHATTPNFSSALNITSG 200
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 230 DYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP 280
DY +E + + L+ PNN + G DEAI ++K +DP
Sbjct: 24 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
>pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
pdb|1GL9|C Chain C, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
Length = 1054
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 312 IDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVI 371
ID P++ L+ L+ DE E+ + ERHI ++ +RP+A +
Sbjct: 361 IDSLSPQMVKLLAYLYRNVDE------IERLLPAVERHIDEVREILKKVMGKERPQAKDV 414
Query: 372 AFRGAQELRPDLRSY-QG 388
R + + PDLR+Y QG
Sbjct: 415 VVREGEVIFPDLRTYIQG 432
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 387 QGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR 446
L H + K EAL R+A+ +PQ+A +G +H S E A ++ +AL
Sbjct: 240 NNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIH-SLXGNFENAVDYFHTALG 298
Query: 447 L 447
L
Sbjct: 299 L 299
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 16/204 (7%)
Query: 115 ASCHFALGETKAAIVEMEGIPS-KARNLQMSLLMAKLYRNSRHNRGAVACYKECLR---- 169
A C GE + AI +++ K N + ++ LY + +++ +ECL+
Sbjct: 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243
Query: 170 --HCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSS--RWLHRYVEAQCC 225
C + + L +L + +++I T S + S + R E C
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH 303
Query: 226 IASNDYK--GGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVR---SIDP 280
S D K + + +E+LQ P+N++ L + A+ I DEAI ++E + D
Sbjct: 304 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ 363
Query: 281 YIMTYMDEYAMLLK--VKCDYSKL 302
I +++ LLK K DY K+
Sbjct: 364 QIREGLEKAQRLLKQSQKRDYYKI 387
>pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus
Length = 1054
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 312 IDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVI 371
ID P++ L+ L+ DE E+ + ERHI ++ +RP+A +
Sbjct: 361 IDSLSPQMVKLLAYLYRNVDE------IERLLPAVERHIDEVREILKKVMGKERPQAKDV 414
Query: 372 AFRGAQELRPDLRSY-QG 388
R + + PDLR+Y QG
Sbjct: 415 VVREGEVIFPDLRTYIQG 432
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,126,850
Number of Sequences: 62578
Number of extensions: 486388
Number of successful extensions: 1290
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1226
Number of HSP's gapped (non-prelim): 86
length of query: 514
length of database: 14,973,337
effective HSP length: 103
effective length of query: 411
effective length of database: 8,527,803
effective search space: 3504927033
effective search space used: 3504927033
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)