Query 010276
Match_columns 514
No_of_seqs 1240 out of 2100
Neff 11.9
Searched_HMMs 46136
Date Thu Mar 28 22:38:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010276.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010276hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 2.7E-50 5.7E-55 356.2 34.7 460 44-510 49-515 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 2.9E-50 6.2E-55 356.0 29.8 437 4-481 51-519 (966)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-43 3.9E-48 369.5 53.6 490 7-512 335-898 (899)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 7.8E-43 1.7E-47 364.8 54.1 495 4-513 162-663 (899)
5 PRK11447 cellulose synthase su 100.0 2.1E-41 4.5E-46 353.1 52.1 509 3-513 64-739 (1157)
6 PRK11447 cellulose synthase su 100.0 8.1E-41 1.8E-45 348.7 54.5 500 3-513 30-699 (1157)
7 TIGR00990 3a0801s09 mitochondr 100.0 1.8E-39 3.9E-44 318.8 46.9 410 43-485 127-575 (615)
8 TIGR00990 3a0801s09 mitochondr 100.0 3.6E-36 7.8E-41 295.5 51.0 424 4-484 130-600 (615)
9 KOG1174 Anaphase-promoting com 100.0 2.2E-34 4.8E-39 243.5 47.5 492 4-514 3-500 (564)
10 PRK09782 bacteriophage N4 rece 100.0 4.4E-35 9.5E-40 291.9 51.0 492 4-513 47-705 (987)
11 KOG2002 TPR-containing nuclear 100.0 8.1E-36 1.8E-40 278.0 38.8 462 4-513 167-708 (1018)
12 PRK15174 Vi polysaccharide exp 100.0 2.1E-34 4.4E-39 281.6 43.8 349 111-501 45-407 (656)
13 KOG1155 Anaphase-promoting com 100.0 1.9E-33 4.2E-38 241.4 42.1 436 45-512 80-534 (559)
14 PRK09782 bacteriophage N4 rece 100.0 6.4E-33 1.4E-37 276.5 51.6 422 43-514 44-672 (987)
15 PRK15174 Vi polysaccharide exp 100.0 8.9E-34 1.9E-38 277.1 42.6 334 139-513 40-380 (656)
16 KOG0547 Translocase of outer m 100.0 7.7E-34 1.7E-38 245.3 36.5 408 43-484 115-569 (606)
17 KOG2002 TPR-containing nuclear 100.0 2.3E-33 5E-38 261.8 41.4 453 18-512 147-673 (1018)
18 PRK10049 pgaA outer membrane p 100.0 4.6E-32 9.9E-37 271.0 43.4 392 48-513 20-455 (765)
19 PRK10049 pgaA outer membrane p 100.0 2.4E-31 5.2E-36 265.8 44.1 409 5-495 19-470 (765)
20 KOG0547 Translocase of outer m 100.0 1.7E-31 3.6E-36 231.0 32.1 230 283-513 326-565 (606)
21 KOG1173 Anaphase-promoting com 100.0 4.4E-30 9.6E-35 226.4 39.4 461 4-513 19-517 (611)
22 KOG1126 DNA-binding cell divis 100.0 9.4E-32 2E-36 242.0 27.4 295 219-514 323-620 (638)
23 PRK14574 hmsH outer membrane p 100.0 1.7E-26 3.6E-31 226.2 49.7 436 39-513 30-512 (822)
24 KOG1155 Anaphase-promoting com 100.0 6.9E-27 1.5E-31 201.3 35.9 368 41-484 162-539 (559)
25 PRK11788 tetratricopeptide rep 100.0 4.7E-27 1E-31 220.2 37.9 295 217-513 37-346 (389)
26 KOG1126 DNA-binding cell divis 100.0 1.6E-28 3.6E-33 221.3 26.5 263 222-485 360-624 (638)
27 PRK11788 tetratricopeptide rep 100.0 9.7E-27 2.1E-31 218.1 37.5 299 140-480 34-346 (389)
28 KOG2003 TPR repeat-containing 100.0 4E-27 8.6E-32 202.6 30.1 427 46-499 240-708 (840)
29 KOG0548 Molecular co-chaperone 100.0 2.8E-26 6.1E-31 201.9 34.6 408 45-509 4-484 (539)
30 KOG2076 RNA polymerase III tra 100.0 1.1E-25 2.3E-30 209.5 38.9 474 39-512 135-893 (895)
31 KOG0495 HAT repeat protein [RN 100.0 1.7E-24 3.8E-29 194.2 42.2 444 58-514 361-846 (913)
32 PLN03081 pentatricopeptide (PP 100.0 5.5E-25 1.2E-29 219.8 43.2 391 106-512 156-555 (697)
33 KOG0624 dsRNA-activated protei 100.0 1.8E-25 3.9E-30 185.4 32.4 345 36-458 31-381 (504)
34 KOG1173 Anaphase-promoting com 100.0 1.7E-24 3.7E-29 191.4 38.3 460 4-495 52-533 (611)
35 PLN03218 maturation of RBCL 1; 100.0 6.7E-23 1.5E-27 206.7 53.7 424 39-509 366-811 (1060)
36 PLN03077 Protein ECB2; Provisi 100.0 2.2E-24 4.7E-29 220.8 42.4 475 8-512 229-718 (857)
37 PRK14574 hmsH outer membrane p 100.0 3.6E-23 7.8E-28 203.0 46.8 454 3-495 36-527 (822)
38 PLN03077 Protein ECB2; Provisi 99.9 8.6E-24 1.9E-28 216.5 43.2 448 42-512 151-684 (857)
39 KOG2076 RNA polymerase III tra 99.9 1.3E-23 2.8E-28 195.9 39.6 357 108-505 139-546 (895)
40 KOG0495 HAT repeat protein [RN 99.9 7E-23 1.5E-27 184.0 42.2 377 39-492 512-892 (913)
41 PLN03081 pentatricopeptide (PP 99.9 2.6E-23 5.6E-28 207.9 43.1 424 45-513 89-522 (697)
42 KOG4162 Predicted calmodulin-b 99.9 7.5E-23 1.6E-27 187.6 40.7 413 41-514 321-783 (799)
43 KOG0624 dsRNA-activated protei 99.9 2.7E-24 6E-29 178.4 27.7 303 211-514 34-370 (504)
44 KOG2003 TPR repeat-containing 99.9 2.9E-24 6.2E-29 185.1 27.9 441 40-511 198-686 (840)
45 TIGR00540 hemY_coli hemY prote 99.9 2.6E-23 5.6E-28 193.5 34.9 294 219-513 88-398 (409)
46 PLN03218 maturation of RBCL 1; 99.9 6.4E-21 1.4E-25 192.5 53.1 447 4-513 373-840 (1060)
47 KOG1174 Anaphase-promoting com 99.9 1.3E-22 2.8E-27 172.6 34.3 368 45-420 132-508 (564)
48 PF13429 TPR_15: Tetratricopep 99.9 6.8E-26 1.5E-30 200.8 14.3 259 253-513 12-276 (280)
49 KOG0548 Molecular co-chaperone 99.9 1.2E-22 2.6E-27 179.2 34.1 425 3-477 4-485 (539)
50 KOG1915 Cell cycle control pro 99.9 1.9E-20 4.1E-25 162.4 42.9 463 43-513 73-584 (677)
51 PF13429 TPR_15: Tetratricopep 99.9 3.6E-25 7.9E-30 196.2 13.0 259 220-481 13-277 (280)
52 TIGR00540 hemY_coli hemY prote 99.9 1.2E-21 2.5E-26 182.5 36.8 296 144-481 87-399 (409)
53 PRK10747 putative protoheme IX 99.9 1.4E-21 3.1E-26 180.8 36.5 292 218-514 87-390 (398)
54 KOG4162 Predicted calmodulin-b 99.9 1.9E-21 4.1E-26 178.5 36.4 375 42-486 356-788 (799)
55 KOG1156 N-terminal acetyltrans 99.9 5.1E-20 1.1E-24 166.0 39.8 429 41-511 5-508 (700)
56 PRK12370 invasion protein regu 99.9 2.2E-21 4.7E-26 187.4 32.0 244 264-511 276-532 (553)
57 KOG1127 TPR repeat-containing 99.9 6E-22 1.3E-26 186.0 26.5 365 43-408 492-909 (1238)
58 PRK10747 putative protoheme IX 99.9 3.2E-20 6.9E-25 171.8 37.2 257 222-482 125-391 (398)
59 PRK12370 invasion protein regu 99.9 2E-21 4.4E-26 187.6 30.4 262 217-482 260-536 (553)
60 KOG1129 TPR repeat-containing 99.9 1.1E-22 2.3E-27 168.0 16.7 248 211-460 219-471 (478)
61 KOG1129 TPR repeat-containing 99.9 2.8E-20 6.1E-25 153.9 30.1 267 224-492 188-470 (478)
62 KOG1127 TPR repeat-containing 99.9 2.3E-20 4.9E-25 175.6 31.2 384 121-510 471-909 (1238)
63 KOG1125 TPR repeat-containing 99.9 1E-21 2.2E-26 174.9 21.1 230 219-449 289-529 (579)
64 PRK11189 lipoprotein NlpI; Pro 99.9 3.5E-20 7.5E-25 164.2 27.6 230 229-463 40-282 (296)
65 KOG1156 N-terminal acetyltrans 99.9 6.4E-19 1.4E-23 159.0 35.4 246 108-393 7-263 (700)
66 KOG1125 TPR repeat-containing 99.9 4.7E-21 1E-25 170.7 21.6 254 253-507 289-564 (579)
67 PRK11189 lipoprotein NlpI; Pro 99.9 3.5E-20 7.7E-25 164.1 27.3 231 263-497 40-283 (296)
68 KOG0550 Molecular chaperone (D 99.9 1.1E-19 2.5E-24 155.0 27.1 303 38-415 44-353 (486)
69 COG2956 Predicted N-acetylgluc 99.9 2.2E-18 4.7E-23 142.6 32.6 292 145-480 39-346 (389)
70 KOG3785 Uncharacterized conser 99.9 1.1E-17 2.4E-22 140.3 34.4 412 8-510 29-486 (557)
71 COG3063 PilF Tfp pilus assembl 99.9 5.3E-19 1.1E-23 139.6 24.9 200 251-451 37-240 (250)
72 COG3063 PilF Tfp pilus assembl 99.9 4E-19 8.7E-24 140.3 23.9 202 283-486 35-241 (250)
73 COG2956 Predicted N-acetylgluc 99.9 8.2E-18 1.8E-22 139.3 32.4 290 218-510 38-343 (389)
74 TIGR02521 type_IV_pilW type IV 99.9 5.5E-19 1.2E-23 153.6 26.3 199 249-481 31-232 (234)
75 KOG0550 Molecular chaperone (D 99.9 5E-20 1.1E-24 157.2 18.8 267 219-486 53-355 (486)
76 TIGR02521 type_IV_pilW type IV 99.9 8.9E-19 1.9E-23 152.3 26.6 198 213-410 29-230 (234)
77 KOG2376 Signal recognition par 99.9 1E-16 2.2E-21 143.4 38.7 448 44-505 13-511 (652)
78 PLN02789 farnesyltranstransfer 99.8 9.8E-19 2.1E-23 153.9 25.2 222 262-483 50-304 (320)
79 KOG1915 Cell cycle control pro 99.8 2.9E-16 6.3E-21 136.8 38.4 424 80-513 76-535 (677)
80 PLN02789 farnesyltranstransfer 99.8 1.5E-17 3.2E-22 146.5 27.2 232 224-455 46-310 (320)
81 cd05804 StaR_like StaR_like; a 99.8 2.7E-16 5.9E-21 145.5 34.6 307 137-482 2-337 (355)
82 cd05804 StaR_like StaR_like; a 99.8 4E-16 8.7E-21 144.4 34.9 300 212-513 3-335 (355)
83 KOG1840 Kinesin light chain [C 99.8 4.8E-17 1E-21 149.4 24.5 237 244-481 194-479 (508)
84 KOG1840 Kinesin light chain [C 99.8 6.5E-17 1.4E-21 148.6 24.2 235 278-513 194-478 (508)
85 PF12569 NARP1: NMDA receptor- 99.8 1.8E-15 3.9E-20 141.1 33.1 292 218-513 7-333 (517)
86 KOG4340 Uncharacterized conser 99.8 4.2E-15 9E-20 122.1 31.1 392 7-488 16-450 (459)
87 KOG3785 Uncharacterized conser 99.8 2.9E-15 6.4E-20 125.9 30.7 378 51-510 30-453 (557)
88 COG3071 HemY Uncharacterized e 99.8 4.3E-14 9.4E-19 121.2 34.4 291 219-513 88-389 (400)
89 COG3071 HemY Uncharacterized e 99.7 9.9E-14 2.1E-18 119.1 33.6 299 41-412 82-390 (400)
90 PF12569 NARP1: NMDA receptor- 99.7 1.3E-13 2.9E-18 128.7 35.3 302 107-447 3-334 (517)
91 TIGR03302 OM_YfiO outer membra 99.7 3.2E-15 7E-20 129.2 21.5 186 280-483 30-234 (235)
92 KOG2376 Signal recognition par 99.7 8.9E-13 1.9E-17 118.6 37.0 362 103-513 41-486 (652)
93 TIGR03302 OM_YfiO outer membra 99.7 6.5E-15 1.4E-19 127.3 22.7 187 212-414 30-234 (235)
94 PRK15359 type III secretion sy 99.7 1.3E-15 2.9E-20 118.8 15.6 122 371-495 14-136 (144)
95 PRK15359 type III secretion sy 99.7 1.2E-15 2.6E-20 119.1 14.9 126 336-465 13-139 (144)
96 PRK04841 transcriptional regul 99.7 1.3E-12 2.9E-17 136.3 40.0 366 109-514 342-760 (903)
97 KOG3060 Uncharacterized conser 99.7 2.3E-14 5.1E-19 115.0 20.1 182 211-392 48-234 (289)
98 KOG2047 mRNA splicing factor [ 99.7 1.1E-10 2.5E-15 106.3 45.0 492 5-513 106-686 (835)
99 PRK04841 transcriptional regul 99.6 6.6E-12 1.4E-16 131.2 40.3 340 110-485 376-764 (903)
100 COG5010 TadD Flp pilus assembl 99.6 8.2E-14 1.8E-18 113.2 19.9 175 302-478 52-228 (257)
101 KOG3060 Uncharacterized conser 99.6 5.7E-12 1.2E-16 101.5 29.5 185 279-463 48-236 (289)
102 COG5010 TadD Flp pilus assembl 99.6 1.3E-13 2.9E-18 112.0 20.2 172 268-441 52-225 (257)
103 PRK14720 transcript cleavage f 99.6 7E-14 1.5E-18 136.4 22.1 222 210-463 26-268 (906)
104 PRK10370 formate-dependent nit 99.6 1E-13 2.2E-18 114.3 19.8 122 363-485 52-177 (198)
105 KOG1130 Predicted G-alpha GTPa 99.6 1.1E-14 2.4E-19 124.9 13.5 265 217-482 19-345 (639)
106 PRK10370 formate-dependent nit 99.6 1.2E-13 2.6E-18 113.8 18.7 152 221-383 22-177 (198)
107 KOG2047 mRNA splicing factor [ 99.6 4.7E-10 1E-14 102.4 42.6 280 222-503 394-712 (835)
108 PRK14720 transcript cleavage f 99.6 1.2E-12 2.7E-17 127.8 28.3 283 138-485 28-310 (906)
109 KOG1128 Uncharacterized conser 99.6 1.9E-13 4.2E-18 126.0 19.2 221 246-482 395-617 (777)
110 KOG1128 Uncharacterized conser 99.6 1.2E-13 2.6E-18 127.3 17.7 223 209-447 392-616 (777)
111 PRK15179 Vi polysaccharide bio 99.6 6.3E-13 1.4E-17 129.0 23.4 150 334-484 70-220 (694)
112 KOG1130 Predicted G-alpha GTPa 99.6 1.3E-13 2.9E-18 118.4 15.9 258 255-513 23-343 (639)
113 PF04733 Coatomer_E: Coatomer 99.6 1.6E-13 3.4E-18 119.7 16.8 257 222-488 8-272 (290)
114 PF04733 Coatomer_E: Coatomer 99.6 3.4E-13 7.3E-18 117.6 18.5 264 1-319 1-272 (290)
115 PRK15179 Vi polysaccharide bio 99.5 8.7E-13 1.9E-17 128.1 20.7 151 232-382 69-220 (694)
116 TIGR02552 LcrH_SycD type III s 99.5 5.5E-13 1.2E-17 104.2 15.5 114 372-486 5-119 (135)
117 KOG4340 Uncharacterized conser 99.5 4.4E-12 9.6E-17 104.6 20.8 347 118-512 20-441 (459)
118 TIGR02552 LcrH_SycD type III s 99.5 5.5E-13 1.2E-17 104.2 14.4 117 337-454 4-121 (135)
119 KOG0553 TPR repeat-containing 99.5 6.5E-13 1.4E-17 110.2 14.6 115 215-329 81-195 (304)
120 PRK10866 outer membrane biogen 99.5 2E-11 4.2E-16 104.0 22.3 186 39-275 28-238 (243)
121 PRK15363 pathogenicity island 99.5 2.6E-12 5.6E-17 97.6 14.9 102 381-483 32-134 (157)
122 PF13525 YfiO: Outer membrane 99.5 8.4E-12 1.8E-16 104.0 18.1 179 40-269 2-198 (203)
123 KOG0553 TPR repeat-containing 99.4 1.6E-12 3.5E-17 107.9 12.6 105 330-435 95-200 (304)
124 PRK15363 pathogenicity island 99.4 1E-11 2.3E-16 94.3 14.3 100 246-345 32-132 (157)
125 COG4783 Putative Zn-dependent 99.4 2.6E-10 5.6E-15 101.3 25.1 124 246-369 303-427 (484)
126 COG4783 Putative Zn-dependent 99.4 2.6E-10 5.6E-15 101.3 24.9 153 217-386 308-462 (484)
127 PF13525 YfiO: Outer membrane 99.4 1.6E-10 3.5E-15 96.3 19.2 157 350-506 5-199 (203)
128 PRK10866 outer membrane biogen 99.3 4.5E-10 9.8E-15 95.8 21.5 176 317-510 32-237 (243)
129 KOG1941 Acetylcholine receptor 99.3 1.2E-09 2.7E-14 92.9 22.8 292 219-511 10-357 (518)
130 COG4785 NlpI Lipoprotein NlpI, 99.3 5.9E-10 1.3E-14 87.8 18.6 212 284-503 66-293 (297)
131 PLN03088 SGT1, suppressor of 99.3 7.3E-11 1.6E-15 107.2 15.9 109 355-464 7-116 (356)
132 PF09976 TPR_21: Tetratricopep 99.3 7.7E-11 1.7E-15 92.7 14.1 132 4-168 14-145 (145)
133 KOG2053 Mitochondrial inherita 99.3 3.5E-07 7.6E-12 87.5 39.2 227 53-316 19-259 (932)
134 PLN03088 SGT1, suppressor of 99.3 1.1E-10 2.3E-15 106.2 15.8 111 219-329 6-116 (356)
135 COG3898 Uncharacterized membra 99.3 1.3E-07 2.8E-12 81.7 31.0 257 218-481 123-392 (531)
136 COG4235 Cytochrome c biogenesi 99.2 6E-10 1.3E-14 93.7 16.3 122 365-486 137-261 (287)
137 PF09976 TPR_21: Tetratricopep 99.2 5.3E-10 1.1E-14 87.9 15.4 117 395-512 23-145 (145)
138 COG3898 Uncharacterized membra 99.2 2.9E-07 6.2E-12 79.7 32.3 284 222-513 91-391 (531)
139 KOG3617 WD40 and TPR repeat-co 99.2 4.6E-08 1E-12 92.3 28.6 326 118-511 738-1171(1416)
140 COG4235 Cytochrome c biogenesi 99.2 7.5E-10 1.6E-14 93.1 15.1 121 266-386 139-263 (287)
141 KOG1070 rRNA processing protei 99.2 2.2E-08 4.7E-13 99.7 27.0 238 266-505 1441-1691(1710)
142 COG4785 NlpI Lipoprotein NlpI, 99.2 2.5E-09 5.4E-14 84.4 16.6 196 213-413 63-267 (297)
143 TIGR02795 tol_pal_ybgF tol-pal 99.2 7.5E-10 1.6E-14 84.4 13.7 100 385-485 4-109 (119)
144 COG0457 NrfG FOG: TPR repeat [ 99.2 3.9E-07 8.4E-12 80.1 33.0 222 262-484 36-268 (291)
145 KOG1070 rRNA processing protei 99.2 5.8E-09 1.3E-13 103.6 22.3 215 299-514 1440-1663(1710)
146 TIGR02795 tol_pal_ybgF tol-pal 99.2 8.6E-10 1.9E-14 84.1 13.7 106 350-456 2-114 (119)
147 KOG3081 Vesicle coat complex C 99.2 8E-08 1.7E-12 78.7 24.7 257 220-487 13-277 (299)
148 PF13414 TPR_11: TPR repeat; P 99.2 1.7E-10 3.6E-15 77.8 8.1 67 416-483 2-69 (69)
149 PRK02603 photosystem I assembl 99.2 2E-09 4.3E-14 87.5 15.6 117 348-485 33-153 (172)
150 cd00189 TPR Tetratricopeptide 99.2 7E-10 1.5E-14 81.2 11.6 98 385-483 2-99 (100)
151 CHL00033 ycf3 photosystem I as 99.2 1.6E-09 3.4E-14 87.9 14.4 100 385-485 37-153 (168)
152 PF14938 SNAP: Soluble NSF att 99.1 3.8E-08 8.3E-13 86.9 23.6 167 256-451 42-229 (282)
153 KOG0543 FKBP-type peptidyl-pro 99.1 1.3E-09 2.8E-14 95.0 13.6 130 353-483 211-357 (397)
154 PRK15331 chaperone protein Sic 99.1 2.8E-09 6.1E-14 81.6 13.0 110 384-495 38-147 (165)
155 COG4700 Uncharacterized protei 99.1 2.7E-08 5.9E-13 76.6 18.1 148 330-480 70-221 (251)
156 KOG3081 Vesicle coat complex C 99.1 3.5E-07 7.6E-12 75.1 25.5 117 49-166 14-133 (299)
157 COG4105 ComL DNA uptake lipopr 99.1 1E-07 2.2E-12 78.6 22.7 192 40-282 31-237 (254)
158 KOG2053 Mitochondrial inherita 99.1 7.2E-07 1.6E-11 85.5 31.4 284 224-509 18-332 (932)
159 PRK02603 photosystem I assembl 99.1 3.2E-09 6.9E-14 86.4 14.1 116 315-451 33-153 (172)
160 PRK10153 DNA-binding transcrip 99.1 6E-09 1.3E-13 98.7 17.7 122 366-489 358-490 (517)
161 PF12895 Apc3: Anaphase-promot 99.1 3.8E-10 8.2E-15 79.3 7.3 78 432-510 3-83 (84)
162 CHL00033 ycf3 photosystem I as 99.1 5.2E-09 1.1E-13 84.8 14.9 121 331-452 14-154 (168)
163 PF13432 TPR_16: Tetratricopep 99.1 6.4E-10 1.4E-14 73.8 7.6 63 221-283 3-65 (65)
164 PF12895 Apc3: Anaphase-promot 99.1 5.3E-10 1.1E-14 78.5 7.5 81 228-309 2-84 (84)
165 COG0457 NrfG FOG: TPR repeat [ 99.1 5.2E-07 1.1E-11 79.2 28.7 222 228-450 36-268 (291)
166 PF13414 TPR_11: TPR repeat; P 99.1 7.1E-10 1.5E-14 74.7 7.7 66 249-314 3-69 (69)
167 KOG1941 Acetylcholine receptor 99.1 1.7E-07 3.7E-12 80.2 23.3 300 143-480 8-359 (518)
168 cd00189 TPR Tetratricopeptide 99.1 3.7E-09 8E-14 77.2 12.2 96 219-314 4-99 (100)
169 PRK15331 chaperone protein Sic 99.1 6.3E-09 1.4E-13 79.7 13.2 96 283-378 37-133 (165)
170 PF13432 TPR_16: Tetratricopep 99.1 9.3E-10 2E-14 73.0 7.5 62 389-451 3-64 (65)
171 KOG1914 mRNA cleavage and poly 99.1 1.2E-05 2.6E-10 73.0 35.2 364 134-507 13-494 (656)
172 KOG4648 Uncharacterized conser 99.1 9.6E-11 2.1E-15 98.7 3.2 232 220-459 102-342 (536)
173 KOG0543 FKBP-type peptidyl-pro 99.0 7.7E-09 1.7E-13 90.3 14.5 126 386-512 211-353 (397)
174 PRK11906 transcriptional regul 99.0 4.9E-08 1.1E-12 87.7 19.4 132 219-350 259-406 (458)
175 KOG3617 WD40 and TPR repeat-co 99.0 1.6E-06 3.4E-11 82.4 29.5 153 113-309 831-993 (1416)
176 COG4105 ComL DNA uptake lipopr 99.0 2.4E-07 5.2E-12 76.5 21.5 186 215-416 34-237 (254)
177 PRK11906 transcriptional regul 99.0 4.3E-08 9.3E-13 88.0 18.6 108 334-443 322-432 (458)
178 PRK10803 tol-pal system protei 99.0 1.6E-08 3.5E-13 86.8 15.3 105 217-321 144-255 (263)
179 PRK10153 DNA-binding transcrip 99.0 2.8E-08 6.1E-13 94.2 18.0 73 346-418 416-488 (517)
180 PRK10803 tol-pal system protei 99.0 1.6E-08 3.5E-13 86.8 14.5 102 384-486 143-251 (263)
181 PF09295 ChAPs: ChAPs (Chs5p-A 99.0 2.1E-08 4.4E-13 90.7 15.7 118 358-478 177-294 (395)
182 PF14938 SNAP: Soluble NSF att 99.0 5E-08 1.1E-12 86.2 17.7 126 222-347 121-268 (282)
183 COG1729 Uncharacterized protei 99.0 2.1E-08 4.6E-13 83.4 13.2 110 44-181 142-255 (262)
184 PF12688 TPR_5: Tetratrico pep 98.9 4.3E-08 9.3E-13 72.5 13.1 95 351-446 2-103 (120)
185 COG1729 Uncharacterized protei 98.9 5.2E-08 1.1E-12 81.2 14.3 106 218-323 144-255 (262)
186 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 5.7E-08 1.2E-12 87.9 15.7 120 387-510 173-293 (395)
187 COG4700 Uncharacterized protei 98.9 4.9E-07 1.1E-11 69.9 17.8 151 359-510 65-218 (251)
188 PF14559 TPR_19: Tetratricopep 98.9 8E-09 1.7E-13 69.3 7.4 66 226-291 2-67 (68)
189 KOG2300 Uncharacterized conser 98.9 4.5E-05 9.8E-10 68.4 40.6 434 42-509 6-551 (629)
190 KOG4648 Uncharacterized conser 98.9 2.7E-09 5.8E-14 90.2 5.5 226 144-418 100-336 (536)
191 PF13512 TPR_18: Tetratricopep 98.9 8E-08 1.7E-12 72.0 12.1 114 38-179 5-137 (142)
192 KOG4234 TPR repeat-containing 98.9 5.2E-08 1.1E-12 76.0 11.3 112 353-465 98-215 (271)
193 PF12688 TPR_5: Tetratrico pep 98.9 9.2E-08 2E-12 70.8 12.2 95 385-480 3-103 (120)
194 KOG3616 Selective LIM binding 98.8 3.2E-05 7E-10 72.9 30.7 232 250-510 662-907 (1636)
195 PF14559 TPR_19: Tetratricopep 98.8 1.6E-08 3.5E-13 67.8 7.1 53 432-484 5-57 (68)
196 KOG2796 Uncharacterized conser 98.8 1.4E-05 2.9E-10 65.8 24.1 224 248-485 68-319 (366)
197 PF13512 TPR_18: Tetratricopep 98.8 4.3E-07 9.3E-12 68.2 14.1 83 216-298 11-99 (142)
198 PF13371 TPR_9: Tetratricopept 98.8 5.3E-08 1.1E-12 66.4 8.4 65 391-456 3-67 (73)
199 KOG4234 TPR repeat-containing 98.8 2.3E-07 5.1E-12 72.5 12.2 107 386-493 98-210 (271)
200 KOG2471 TPR repeat-containing 98.8 1.9E-05 4.1E-10 70.8 25.2 246 11-295 110-381 (696)
201 PF13371 TPR_9: Tetratricopept 98.7 8.7E-08 1.9E-12 65.3 8.4 68 222-289 2-69 (73)
202 KOG2471 TPR repeat-containing 98.7 2.9E-05 6.4E-10 69.6 25.0 316 106-445 238-682 (696)
203 KOG4555 TPR repeat-containing 98.7 7.9E-07 1.7E-11 64.3 11.6 99 386-485 46-148 (175)
204 KOG3616 Selective LIM binding 98.7 7E-05 1.5E-09 70.8 27.4 49 119-167 455-503 (1636)
205 KOG1586 Protein required for f 98.6 6.3E-05 1.4E-09 60.9 21.6 136 318-454 75-231 (288)
206 KOG2300 Uncharacterized conser 98.6 0.0005 1.1E-08 62.0 36.8 368 109-513 8-473 (629)
207 KOG4555 TPR repeat-containing 98.5 2.4E-06 5.1E-11 61.9 11.1 97 353-450 46-147 (175)
208 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 9.7E-07 2.1E-11 79.4 11.2 67 380-447 71-141 (453)
209 KOG2796 Uncharacterized conser 98.5 0.00023 5E-09 58.8 23.6 216 222-451 76-319 (366)
210 PF07079 DUF1347: Protein of u 98.5 0.00069 1.5E-08 60.7 39.6 148 45-244 8-157 (549)
211 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 5.1E-07 1.1E-11 81.2 8.9 70 412-482 70-142 (453)
212 PF13424 TPR_12: Tetratricopep 98.5 1.5E-07 3.4E-12 65.0 4.6 62 452-513 5-74 (78)
213 KOG1914 mRNA cleavage and poly 98.5 0.00086 1.9E-08 61.5 36.0 407 39-483 16-503 (656)
214 KOG0985 Vesicle coat protein c 98.5 0.0018 3.9E-08 64.0 34.3 255 222-505 1111-1374(1666)
215 PF06552 TOM20_plant: Plant sp 98.5 2.7E-06 5.8E-11 66.1 10.7 64 366-429 7-81 (186)
216 PF10345 Cohesin_load: Cohesin 98.5 0.0021 4.6E-08 63.8 41.1 416 34-512 50-604 (608)
217 KOG1258 mRNA processing protei 98.5 0.0014 3E-08 61.3 33.4 338 136-513 74-469 (577)
218 KOG1586 Protein required for f 98.4 0.0002 4.4E-09 58.1 20.6 191 54-317 25-229 (288)
219 PF13424 TPR_12: Tetratricopep 98.4 3.5E-07 7.5E-12 63.2 4.7 65 416-481 4-75 (78)
220 PF10300 DUF3808: Protein of u 98.4 0.00013 2.9E-09 69.2 23.3 154 357-512 195-374 (468)
221 KOG2610 Uncharacterized conser 98.4 1.3E-05 2.8E-10 68.4 14.6 155 324-479 111-274 (491)
222 KOG0985 Vesicle coat protein c 98.4 0.003 6.6E-08 62.5 35.5 286 49-371 1054-1375(1666)
223 KOG1585 Protein required for f 98.4 0.0001 2.2E-09 60.1 17.9 205 43-340 31-251 (308)
224 KOG2610 Uncharacterized conser 98.4 9.6E-05 2.1E-09 63.2 18.4 156 222-377 110-274 (491)
225 PF05843 Suf: Suppressor of fo 98.4 2.8E-05 6.1E-10 68.5 16.3 137 285-421 3-145 (280)
226 KOG4642 Chaperone-dependent E3 98.3 6.5E-06 1.4E-10 66.6 10.1 91 356-447 16-107 (284)
227 PF06552 TOM20_plant: Plant sp 98.3 1E-05 2.3E-10 62.9 10.8 67 231-297 7-83 (186)
228 KOG1585 Protein required for f 98.3 0.00034 7.3E-09 57.2 19.6 191 249-441 31-250 (308)
229 PF04184 ST7: ST7 protein; In 98.3 9.1E-05 2E-09 67.2 18.1 191 254-456 173-384 (539)
230 PF05843 Suf: Suppressor of fo 98.3 1.9E-05 4E-10 69.6 13.7 136 352-488 3-143 (280)
231 PF04184 ST7: ST7 protein; In 98.3 5.3E-05 1.1E-09 68.7 16.3 188 146-353 173-383 (539)
232 PF13428 TPR_14: Tetratricopep 98.3 2E-06 4.2E-11 51.3 5.0 43 141-183 1-43 (44)
233 COG2976 Uncharacterized protei 98.2 0.0001 2.2E-09 58.2 14.8 106 43-176 89-194 (207)
234 COG5107 RNA14 Pre-mRNA 3'-end 98.2 0.0035 7.5E-08 56.3 30.9 143 129-282 30-194 (660)
235 KOG4507 Uncharacterized conser 98.2 0.00013 2.9E-09 67.1 17.2 109 140-254 212-322 (886)
236 PF13428 TPR_14: Tetratricopep 98.2 3.7E-06 8.1E-11 50.0 5.0 41 250-290 2-42 (44)
237 PF13431 TPR_17: Tetratricopep 98.2 1.6E-06 3.5E-11 47.9 3.0 32 441-472 2-33 (34)
238 PF13281 DUF4071: Domain of un 98.2 0.0019 4.1E-08 58.0 23.5 116 249-365 141-274 (374)
239 KOG4642 Chaperone-dependent E3 98.2 8.4E-06 1.8E-10 66.0 8.0 94 219-312 14-107 (284)
240 COG3118 Thioredoxin domain-con 98.1 0.00051 1.1E-08 58.3 17.5 147 45-263 136-286 (304)
241 KOG1258 mRNA processing protei 98.1 0.0086 1.9E-07 56.2 30.7 80 105-184 76-160 (577)
242 PF10300 DUF3808: Protein of u 98.1 0.0034 7.4E-08 59.8 25.1 172 272-447 180-376 (468)
243 PF00515 TPR_1: Tetratricopept 98.1 6E-06 1.3E-10 46.0 3.8 33 43-75 1-33 (34)
244 PF07719 TPR_2: Tetratricopept 98.1 8.7E-06 1.9E-10 45.4 4.4 34 43-76 1-34 (34)
245 KOG1550 Extracellular protein 98.1 0.011 2.5E-07 57.7 28.3 247 228-485 262-542 (552)
246 KOG0530 Protein farnesyltransf 98.1 0.0037 8E-08 52.0 20.6 167 263-429 57-233 (318)
247 KOG0890 Protein kinase of the 98.0 0.026 5.7E-07 61.6 31.9 386 48-482 1388-1834(2382)
248 COG2909 MalT ATP-dependent tra 98.0 0.016 3.5E-07 57.0 33.9 193 40-297 344-551 (894)
249 KOG4507 Uncharacterized conser 98.0 0.00035 7.6E-09 64.5 15.7 89 426-514 615-705 (886)
250 PF13281 DUF4071: Domain of un 98.0 0.0012 2.6E-08 59.3 18.6 167 283-450 141-337 (374)
251 KOG0545 Aryl-hydrocarbon recep 98.0 0.00038 8.2E-09 56.9 13.7 104 217-320 180-301 (329)
252 KOG0545 Aryl-hydrocarbon recep 98.0 0.00027 5.8E-09 57.8 12.8 104 350-454 178-300 (329)
253 KOG0530 Protein farnesyltransf 98.0 0.0057 1.2E-07 50.9 20.1 202 226-427 54-269 (318)
254 PRK13184 pknD serine/threonine 97.9 0.026 5.7E-07 57.7 28.8 106 45-178 477-589 (932)
255 PF02259 FAT: FAT domain; Int 97.9 0.018 4E-07 53.3 27.5 182 222-411 5-212 (352)
256 PF08631 SPO22: Meiosis protei 97.9 0.014 3E-07 51.6 24.3 162 151-345 3-186 (278)
257 KOG0376 Serine-threonine phosp 97.9 2.3E-05 4.9E-10 70.6 6.1 107 221-327 10-116 (476)
258 PF07079 DUF1347: Protein of u 97.9 0.016 3.6E-07 52.3 34.6 372 44-443 80-520 (549)
259 PF10345 Cohesin_load: Cohesin 97.9 0.032 6.9E-07 55.6 35.9 308 125-470 38-467 (608)
260 PF13431 TPR_17: Tetratricopep 97.9 1.4E-05 3E-10 44.1 3.1 32 406-438 2-33 (34)
261 PF02259 FAT: FAT domain; Int 97.9 0.015 3.2E-07 53.9 25.0 145 280-429 143-304 (352)
262 COG3118 Thioredoxin domain-con 97.8 0.0025 5.3E-08 54.3 16.6 147 249-397 134-286 (304)
263 KOG0376 Serine-threonine phosp 97.8 4.2E-05 9E-10 69.0 5.9 99 330-428 18-117 (476)
264 KOG0890 Protein kinase of the 97.8 0.064 1.4E-06 58.8 29.6 313 113-482 1388-1732(2382)
265 PF07719 TPR_2: Tetratricopept 97.8 7.4E-05 1.6E-09 41.6 5.0 33 250-282 2-34 (34)
266 PF00515 TPR_1: Tetratricopept 97.8 6.8E-05 1.5E-09 41.7 4.6 31 454-484 3-33 (34)
267 KOG1550 Extracellular protein 97.7 0.032 7E-07 54.6 25.2 273 230-513 227-537 (552)
268 COG2976 Uncharacterized protei 97.7 0.0018 3.8E-08 51.4 13.1 97 386-485 92-192 (207)
269 PF03704 BTAD: Bacterial trans 97.7 0.0014 3E-08 51.7 13.0 109 388-511 11-122 (146)
270 KOG1308 Hsp70-interacting prot 97.7 3.9E-05 8.4E-10 65.9 4.2 89 359-448 123-212 (377)
271 COG0790 FOG: TPR repeat, SEL1 97.7 0.023 5E-07 51.0 22.3 146 332-484 93-269 (292)
272 PF13181 TPR_8: Tetratricopept 97.6 9.6E-05 2.1E-09 41.1 4.0 33 43-75 1-33 (34)
273 KOG0551 Hsp90 co-chaperone CNS 97.6 0.00045 9.7E-09 59.2 9.4 114 38-178 76-190 (390)
274 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.049 1.1E-06 49.3 31.6 210 272-485 291-535 (660)
275 PF03704 BTAD: Bacterial trans 97.6 0.0024 5.2E-08 50.3 12.9 92 219-310 10-123 (146)
276 PF08424 NRDE-2: NRDE-2, neces 97.6 0.0089 1.9E-07 54.0 17.7 145 236-380 6-184 (321)
277 COG2909 MalT ATP-dependent tra 97.6 0.097 2.1E-06 51.9 26.5 227 283-510 415-684 (894)
278 PRK13184 pknD serine/threonine 97.6 0.091 2E-06 53.9 26.1 328 147-512 481-867 (932)
279 KOG2041 WD40 repeat protein [G 97.6 0.086 1.9E-06 50.6 26.5 123 39-167 688-822 (1189)
280 KOG0551 Hsp90 co-chaperone CNS 97.6 0.0014 3E-08 56.4 11.1 96 352-448 83-183 (390)
281 PF13174 TPR_6: Tetratricopept 97.5 0.00027 5.9E-09 38.9 4.2 33 44-76 1-33 (33)
282 PF08631 SPO22: Meiosis protei 97.5 0.07 1.5E-06 47.2 26.4 159 353-512 87-273 (278)
283 COG0790 FOG: TPR repeat, SEL1 97.4 0.082 1.8E-06 47.4 22.1 157 227-390 53-230 (292)
284 PF04910 Tcf25: Transcriptiona 97.4 0.019 4.2E-07 52.4 17.6 144 240-383 31-226 (360)
285 PF08424 NRDE-2: NRDE-2, neces 97.4 0.02 4.2E-07 51.8 17.5 86 337-422 6-104 (321)
286 PF04910 Tcf25: Transcriptiona 97.3 0.021 4.6E-07 52.1 16.7 100 385-484 105-225 (360)
287 COG4649 Uncharacterized protei 97.3 0.022 4.7E-07 44.3 13.6 136 120-292 70-209 (221)
288 KOG1308 Hsp70-interacting prot 97.3 0.00014 3.1E-09 62.5 2.0 95 220-314 119-213 (377)
289 PF13181 TPR_8: Tetratricopept 97.2 0.00078 1.7E-08 37.3 4.3 30 454-483 3-32 (34)
290 KOG1538 Uncharacterized conser 97.2 0.056 1.2E-06 51.3 18.2 51 9-72 564-614 (1081)
291 PF13174 TPR_6: Tetratricopept 97.2 0.00073 1.6E-08 37.1 4.0 32 454-485 2-33 (33)
292 PF13176 TPR_7: Tetratricopept 97.2 0.0007 1.5E-08 38.0 3.8 29 45-73 1-29 (36)
293 KOG3783 Uncharacterized conser 97.2 0.065 1.4E-06 49.9 18.0 237 232-485 250-524 (546)
294 KOG2041 WD40 repeat protein [G 97.2 0.26 5.7E-06 47.5 25.4 200 120-375 675-877 (1189)
295 PF13176 TPR_7: Tetratricopept 97.1 0.00059 1.3E-08 38.3 3.2 25 488-512 2-26 (36)
296 PF14561 TPR_20: Tetratricopep 97.1 0.0099 2.1E-07 41.7 9.4 73 438-510 8-83 (90)
297 PF04781 DUF627: Protein of un 97.1 0.012 2.7E-07 42.1 9.7 90 222-311 3-106 (111)
298 PF09613 HrpB1_HrpK: Bacterial 97.0 0.085 1.8E-06 41.1 14.8 82 386-468 13-94 (160)
299 PF14561 TPR_20: Tetratricopep 96.9 0.024 5.1E-07 39.8 10.0 67 234-300 7-75 (90)
300 PF09613 HrpB1_HrpK: Bacterial 96.8 0.045 9.8E-07 42.5 11.7 80 220-299 15-94 (160)
301 PF14853 Fis1_TPR_C: Fis1 C-te 96.7 0.011 2.3E-07 36.3 6.4 37 251-287 3-39 (53)
302 KOG1464 COP9 signalosome, subu 96.7 0.31 6.8E-06 41.2 17.2 94 354-448 149-261 (440)
303 KOG3824 Huntingtin interacting 96.6 0.0068 1.5E-07 51.6 6.7 66 360-425 126-192 (472)
304 KOG3824 Huntingtin interacting 96.6 0.011 2.4E-07 50.4 7.7 73 219-291 120-192 (472)
305 smart00028 TPR Tetratricopepti 96.5 0.0043 9.4E-08 33.6 3.7 32 44-75 2-33 (34)
306 PF04781 DUF627: Protein of un 96.5 0.043 9.2E-07 39.5 9.0 92 390-481 3-107 (111)
307 PRK10941 hypothetical protein; 96.5 0.042 9E-07 47.7 10.8 76 251-326 183-258 (269)
308 PF14853 Fis1_TPR_C: Fis1 C-te 96.5 0.016 3.4E-07 35.6 5.8 40 142-181 2-41 (53)
309 PRK10941 hypothetical protein; 96.4 0.05 1.1E-06 47.2 11.0 70 386-456 184-253 (269)
310 PF12968 DUF3856: Domain of Un 96.4 0.073 1.6E-06 38.5 9.7 82 432-513 23-128 (144)
311 KOG1538 Uncharacterized conser 96.4 0.64 1.4E-05 44.6 18.4 81 223-308 564-657 (1081)
312 PF09986 DUF2225: Uncharacteri 96.4 0.03 6.5E-07 46.8 9.3 91 395-486 89-199 (214)
313 KOG2396 HAT (Half-A-TPR) repea 96.3 0.93 2E-05 42.2 35.1 78 107-184 104-183 (568)
314 PF10602 RPN7: 26S proteasome 96.2 0.19 4.2E-06 40.7 12.4 105 39-171 32-143 (177)
315 PRK15180 Vi polysaccharide bio 96.1 0.11 2.4E-06 47.6 11.7 128 323-451 296-424 (831)
316 PRK15180 Vi polysaccharide bio 96.1 0.1 2.2E-06 47.8 11.3 129 223-351 297-426 (831)
317 smart00028 TPR Tetratricopepti 96.0 0.014 3.1E-07 31.4 3.8 30 454-483 3-32 (34)
318 COG4649 Uncharacterized protei 96.0 0.58 1.2E-05 36.8 16.2 140 219-359 62-209 (221)
319 KOG0128 RNA-binding protein SA 96.0 1.9 4.2E-05 42.8 33.4 406 43-510 113-559 (881)
320 TIGR02561 HrpB1_HrpK type III 96.0 0.14 3E-06 39.1 9.8 78 222-299 17-94 (153)
321 KOG1464 COP9 signalosome, subu 95.9 0.89 1.9E-05 38.6 17.6 188 227-414 39-262 (440)
322 TIGR02561 HrpB1_HrpK type III 95.9 0.15 3.3E-06 38.9 9.8 73 395-468 22-94 (153)
323 KOG2422 Uncharacterized conser 95.8 1.6 3.4E-05 41.5 17.6 49 228-276 251-311 (665)
324 PRK11619 lytic murein transgly 95.8 2.5 5.4E-05 42.4 34.5 314 109-479 34-373 (644)
325 PRK11619 lytic murein transgly 95.6 2.8 6E-05 42.1 44.4 202 294-509 252-463 (644)
326 KOG3783 Uncharacterized conser 95.6 1.8 3.8E-05 40.9 17.3 231 266-512 250-518 (546)
327 PF12968 DUF3856: Domain of Un 95.6 0.58 1.2E-05 34.1 11.7 84 361-445 20-127 (144)
328 COG3914 Spy Predicted O-linked 95.6 0.66 1.4E-05 44.0 14.5 129 300-428 48-187 (620)
329 PF09986 DUF2225: Uncharacteri 95.6 0.46 1E-05 39.8 12.6 34 39-72 114-147 (214)
330 PF10602 RPN7: 26S proteasome 95.5 0.92 2E-05 36.8 13.9 103 139-278 34-142 (177)
331 KOG2422 Uncharacterized conser 95.5 2 4.4E-05 40.8 17.3 136 347-483 281-450 (665)
332 COG4976 Predicted methyltransf 95.5 0.026 5.7E-07 46.1 4.7 58 393-451 5-62 (287)
333 KOG4814 Uncharacterized conser 95.4 0.21 4.6E-06 47.5 10.8 95 218-312 357-457 (872)
334 KOG3364 Membrane protein invol 95.3 0.42 9.1E-06 35.8 10.0 32 420-452 74-105 (149)
335 COG4976 Predicted methyltransf 95.3 0.036 7.8E-07 45.3 4.8 60 358-417 3-63 (287)
336 KOG3364 Membrane protein invol 95.2 0.84 1.8E-05 34.2 11.3 77 248-324 31-112 (149)
337 PF04190 DUF410: Protein of un 95.1 2.1 4.5E-05 37.4 18.6 33 2-34 11-43 (260)
338 COG5159 RPN6 26S proteasome re 95.0 2.1 4.5E-05 36.8 16.7 162 5-168 7-192 (421)
339 KOG1463 26S proteasome regulat 95.0 2.4 5.2E-05 37.5 19.3 272 5-314 8-318 (411)
340 PF04053 Coatomer_WDAD: Coatom 95.0 1.4 2.9E-05 41.8 15.1 54 107-167 320-373 (443)
341 COG5191 Uncharacterized conser 95.0 0.068 1.5E-06 45.9 5.9 86 238-323 96-182 (435)
342 PF13374 TPR_10: Tetratricopep 95.0 0.054 1.2E-06 31.4 4.0 31 43-73 2-32 (42)
343 PF04053 Coatomer_WDAD: Coatom 94.9 2 4.4E-05 40.7 15.8 28 248-275 346-373 (443)
344 COG3914 Spy Predicted O-linked 94.8 2.8 6.1E-05 40.1 16.1 130 263-392 45-185 (620)
345 COG5191 Uncharacterized conser 94.8 0.063 1.4E-06 46.1 5.1 84 272-355 96-181 (435)
346 PF13374 TPR_10: Tetratricopep 94.7 0.046 9.9E-07 31.7 3.2 26 454-479 4-29 (42)
347 PF11207 DUF2989: Protein of u 94.6 1.3 2.9E-05 36.1 12.0 56 415-472 139-198 (203)
348 KOG4814 Uncharacterized conser 94.5 0.49 1.1E-05 45.2 10.7 91 355-446 359-456 (872)
349 KOG1310 WD40 repeat protein [G 94.4 0.25 5.5E-06 46.0 8.4 96 222-317 381-479 (758)
350 PF11207 DUF2989: Protein of u 94.4 0.56 1.2E-05 38.2 9.4 78 293-370 116-198 (203)
351 KOG0529 Protein geranylgeranyl 94.3 4 8.8E-05 37.2 15.3 127 229-355 89-234 (421)
352 KOG1310 WD40 repeat protein [G 94.3 0.16 3.5E-06 47.2 6.9 88 297-384 388-479 (758)
353 PF15015 NYD-SP12_N: Spermatog 94.0 0.88 1.9E-05 41.3 10.7 58 387-445 232-289 (569)
354 PF04190 DUF410: Protein of un 94.0 3.9 8.4E-05 35.7 19.6 26 281-306 88-113 (260)
355 PF10516 SHNi-TPR: SHNi-TPR; 94.0 0.1 2.2E-06 29.4 3.3 30 44-73 2-31 (38)
356 KOG1839 Uncharacterized protei 93.9 0.89 1.9E-05 47.6 11.9 158 354-512 936-1126(1236)
357 COG1747 Uncharacterized N-term 93.9 5.9 0.00013 37.3 19.5 93 250-344 67-159 (711)
358 KOG3807 Predicted membrane pro 93.6 4.8 0.0001 35.5 15.9 142 145-306 188-334 (556)
359 KOG0128 RNA-binding protein SA 93.6 8.8 0.00019 38.5 27.3 283 225-512 200-524 (881)
360 PF07721 TPR_4: Tetratricopept 93.5 0.13 2.8E-06 26.1 2.9 21 455-475 4-24 (26)
361 PF12862 Apc5: Anaphase-promot 93.4 0.39 8.5E-06 34.2 6.4 65 10-74 7-72 (94)
362 PF07721 TPR_4: Tetratricopept 93.3 0.099 2.1E-06 26.6 2.3 25 44-68 2-26 (26)
363 PF12862 Apc5: Anaphase-promot 93.2 0.62 1.3E-05 33.1 7.2 27 353-379 44-70 (94)
364 PF10579 Rapsyn_N: Rapsyn N-te 93.1 0.63 1.4E-05 31.1 6.3 61 43-131 6-66 (80)
365 PF11817 Foie-gras_1: Foie gra 93.0 5.6 0.00012 34.5 15.8 54 455-508 181-241 (247)
366 PF15015 NYD-SP12_N: Spermatog 92.9 3 6.6E-05 38.0 12.2 88 220-307 181-286 (569)
367 KOG1839 Uncharacterized protei 92.9 1.4 3E-05 46.3 11.5 128 218-345 935-1086(1236)
368 COG5159 RPN6 26S proteasome re 92.6 6.3 0.00014 34.1 22.0 211 47-312 7-235 (421)
369 PF07720 TPR_3: Tetratricopept 92.5 0.54 1.2E-05 26.1 4.7 21 454-474 3-23 (36)
370 COG3629 DnrI DNA-binding trans 92.5 1.5 3.3E-05 38.1 9.7 63 249-311 153-215 (280)
371 PF10516 SHNi-TPR: SHNi-TPR; 92.5 0.23 5E-06 28.0 3.2 27 487-513 3-29 (38)
372 PF07720 TPR_3: Tetratricopept 92.3 0.65 1.4E-05 25.8 4.8 21 251-271 3-23 (36)
373 COG4455 ImpE Protein of avirul 92.3 1.7 3.7E-05 35.8 9.0 125 116-248 9-138 (273)
374 COG2912 Uncharacterized conser 92.3 1.4 3E-05 37.8 9.1 73 253-325 185-257 (269)
375 COG2912 Uncharacterized conser 92.2 1.5 3.3E-05 37.6 9.1 54 432-485 195-248 (269)
376 PF12854 PPR_1: PPR repeat 92.2 0.35 7.6E-06 26.5 3.7 29 380-408 4-32 (34)
377 COG1747 Uncharacterized N-term 92.2 11 0.00023 35.7 21.9 83 227-312 78-160 (711)
378 KOG2114 Vacuolar assembly/sort 92.1 15 0.00031 37.2 27.6 61 4-72 337-397 (933)
379 PF12854 PPR_1: PPR repeat 92.1 0.39 8.5E-06 26.3 3.8 29 482-510 4-32 (34)
380 KOG0529 Protein geranylgeranyl 92.1 9 0.0002 35.1 14.1 157 232-388 46-234 (421)
381 KOG2396 HAT (Half-A-TPR) repea 91.9 11 0.00025 35.5 33.3 97 385-481 462-559 (568)
382 COG3629 DnrI DNA-binding trans 91.8 2.4 5.2E-05 37.0 10.0 62 384-446 154-215 (280)
383 COG4941 Predicted RNA polymera 91.2 10 0.00023 33.6 15.9 184 229-422 210-404 (415)
384 PF13041 PPR_2: PPR repeat fam 91.1 1.1 2.3E-05 27.2 5.6 43 452-494 3-47 (50)
385 PF09670 Cas_Cas02710: CRISPR- 91.1 7.1 0.00015 36.4 13.2 61 218-278 134-198 (379)
386 PF00244 14-3-3: 14-3-3 protei 91.1 9.2 0.0002 32.8 15.2 59 286-344 4-65 (236)
387 KOG2063 Vacuolar assembly/sort 90.7 23 0.00049 36.7 27.4 64 4-70 310-373 (877)
388 smart00299 CLH Clathrin heavy 90.7 6.4 0.00014 30.4 11.5 48 293-340 17-64 (140)
389 PF10579 Rapsyn_N: Rapsyn N-te 90.7 2.6 5.6E-05 28.3 7.1 32 294-325 17-48 (80)
390 PF13041 PPR_2: PPR repeat fam 90.4 2.1 4.6E-05 25.8 6.4 27 385-411 5-31 (50)
391 KOG1463 26S proteasome regulat 90.3 13 0.00028 33.2 24.2 282 46-382 7-319 (411)
392 PF12739 TRAPPC-Trs85: ER-Golg 89.8 12 0.00027 35.4 13.9 27 487-513 371-398 (414)
393 KOG3807 Predicted membrane pro 89.7 14 0.0003 32.8 16.1 192 253-458 188-402 (556)
394 PF10255 Paf67: RNA polymerase 89.6 0.81 1.8E-05 42.2 5.6 59 111-169 125-192 (404)
395 TIGR03504 FimV_Cterm FimV C-te 89.4 0.9 1.9E-05 26.6 3.8 27 455-481 2-28 (44)
396 smart00386 HAT HAT (Half-A-TPR 89.2 1 2.2E-05 24.0 3.9 30 155-184 1-30 (33)
397 PRK12798 chemotaxis protein; R 88.7 20 0.00043 33.2 21.1 90 84-173 87-180 (421)
398 TIGR03504 FimV_Cterm FimV C-te 88.4 0.87 1.9E-05 26.7 3.3 26 488-513 2-27 (44)
399 KOG1497 COP9 signalosome, subu 88.2 12 0.00026 33.0 11.1 100 108-243 103-212 (399)
400 smart00386 HAT HAT (Half-A-TPR 88.1 1.8 3.8E-05 22.9 4.5 24 399-422 3-26 (33)
401 COG4941 Predicted RNA polymera 88.1 19 0.00041 32.2 16.0 86 366-452 312-399 (415)
402 PF00244 14-3-3: 14-3-3 protei 87.7 17 0.00037 31.2 13.2 29 354-382 5-33 (236)
403 KOG4279 Serine/threonine prote 87.3 4 8.6E-05 40.3 8.7 114 283-397 201-334 (1226)
404 PF11817 Foie-gras_1: Foie gra 86.9 6.9 0.00015 33.9 9.5 84 395-479 150-245 (247)
405 PF10373 EST1_DNA_bind: Est1 D 86.9 2.9 6.3E-05 37.1 7.5 61 369-429 1-62 (278)
406 COG3947 Response regulator con 86.8 3.6 7.7E-05 35.7 7.2 58 252-309 282-339 (361)
407 smart00299 CLH Clathrin heavy 86.1 14 0.0003 28.6 15.5 37 260-296 18-54 (140)
408 PF09670 Cas_Cas02710: CRISPR- 85.8 21 0.00046 33.3 12.6 58 354-411 135-197 (379)
409 COG4455 ImpE Protein of avirul 85.4 7.4 0.00016 32.3 8.0 62 222-283 8-69 (273)
410 PF04049 APC8: Anaphase promot 85.2 2.9 6.3E-05 32.4 5.7 67 4-70 13-101 (142)
411 COG3947 Response regulator con 85.0 5.5 0.00012 34.6 7.5 55 423-478 285-339 (361)
412 KOG0276 Vesicle coat complex C 84.8 11 0.00024 36.4 10.0 50 116-169 645-694 (794)
413 PF04097 Nic96: Nup93/Nic96; 84.6 48 0.001 33.5 26.3 150 255-409 264-440 (613)
414 PF10255 Paf67: RNA polymerase 83.9 38 0.00082 31.7 14.3 58 354-411 126-192 (404)
415 PF01535 PPR: PPR repeat; Int 83.3 2.3 5.1E-05 22.1 3.3 25 386-410 3-27 (31)
416 PF10373 EST1_DNA_bind: Est1 D 82.9 6 0.00013 35.0 7.7 61 234-294 1-61 (278)
417 KOG2114 Vacuolar assembly/sort 82.6 61 0.0013 33.1 15.0 204 116-345 342-550 (933)
418 KOG2581 26S proteasome regulat 81.3 45 0.00098 30.8 18.2 98 219-316 173-280 (493)
419 PF01535 PPR: PPR repeat; Int 80.7 3 6.4E-05 21.7 3.1 26 144-169 3-28 (31)
420 PF12739 TRAPPC-Trs85: ER-Golg 80.6 54 0.0012 31.2 16.0 30 219-248 212-241 (414)
421 PF02184 HAT: HAT (Half-A-TPR) 80.5 5.3 0.00011 21.4 3.7 27 467-493 2-28 (32)
422 KOG1920 IkappaB kinase complex 78.4 33 0.00071 36.4 11.4 18 118-135 861-878 (1265)
423 TIGR00756 PPR pentatricopeptid 78.0 5.9 0.00013 21.1 3.9 26 386-411 3-28 (35)
424 TIGR02710 CRISPR-associated pr 77.9 59 0.0013 30.2 12.9 55 220-274 135-196 (380)
425 cd02683 MIT_1 MIT: domain cont 76.9 6.1 0.00013 26.7 4.3 32 41-72 4-35 (77)
426 PF11846 DUF3366: Domain of un 76.8 6.5 0.00014 32.5 5.5 52 434-486 127-178 (193)
427 cd02682 MIT_AAA_Arch MIT: doma 76.7 6 0.00013 26.5 4.1 30 43-72 6-35 (75)
428 PF04348 LppC: LppC putative l 76.1 0.85 1.8E-05 44.5 0.0 60 107-166 23-86 (536)
429 KOG0276 Vesicle coat complex C 75.7 85 0.0018 30.9 14.6 100 117-277 595-694 (794)
430 KOG4014 Uncharacterized conser 75.6 41 0.00089 27.2 14.9 182 314-513 31-232 (248)
431 COG5536 BET4 Protein prenyltra 75.6 20 0.00044 31.0 7.7 125 231-355 90-232 (328)
432 KOG0546 HSP90 co-chaperone CPR 75.6 4.7 0.0001 36.0 4.3 63 422-485 280-342 (372)
433 PF14863 Alkyl_sulf_dimr: Alky 75.5 12 0.00026 29.0 6.0 42 222-263 77-118 (141)
434 TIGR00756 PPR pentatricopeptid 74.2 8 0.00017 20.6 3.8 27 455-481 3-29 (35)
435 PF13812 PPR_3: Pentatricopept 73.8 11 0.00025 19.9 4.3 26 386-411 4-29 (34)
436 PF04212 MIT: MIT (microtubule 73.7 8.3 0.00018 25.4 4.3 29 44-72 6-34 (69)
437 PF14863 Alkyl_sulf_dimr: Alky 73.7 35 0.00075 26.5 8.1 47 384-430 71-117 (141)
438 PF04097 Nic96: Nup93/Nic96; 73.1 1.1E+02 0.0024 31.0 15.2 152 355-511 263-440 (613)
439 PF08311 Mad3_BUB1_I: Mad3/BUB 72.9 39 0.00084 25.6 9.6 78 63-168 46-126 (126)
440 KOG2063 Vacuolar assembly/sort 72.7 1.3E+02 0.0028 31.6 19.5 65 251-315 506-576 (877)
441 cd02681 MIT_calpain7_1 MIT: do 72.5 8.6 0.00019 25.9 4.1 31 42-72 5-35 (76)
442 cd02680 MIT_calpain7_2 MIT: do 72.1 8.1 0.00018 25.9 3.8 15 432-446 20-34 (75)
443 PF11846 DUF3366: Domain of un 71.7 18 0.00039 29.9 6.9 44 371-414 132-175 (193)
444 COG5187 RPN7 26S proteasome re 70.8 56 0.0012 28.6 9.3 51 121-171 95-145 (412)
445 cd02679 MIT_spastin MIT: domai 70.8 9.8 0.00021 25.8 4.0 15 432-446 22-36 (79)
446 KOG0687 26S proteasome regulat 69.3 86 0.0019 28.1 14.5 54 118-171 81-134 (393)
447 cd02681 MIT_calpain7_1 MIT: do 68.9 11 0.00023 25.5 3.9 15 432-446 20-34 (76)
448 PF04212 MIT: MIT (microtubule 68.0 10 0.00022 24.9 3.7 14 432-445 19-32 (69)
449 PF10952 DUF2753: Protein of u 67.5 36 0.00077 25.4 6.4 29 45-73 3-31 (140)
450 COG5536 BET4 Protein prenyltra 67.0 88 0.0019 27.4 11.6 141 302-443 93-256 (328)
451 cd02680 MIT_calpain7_2 MIT: do 66.4 14 0.00031 24.8 4.1 31 43-73 6-36 (75)
452 TIGR03362 VI_chp_7 type VI sec 64.0 1.1E+02 0.0024 27.5 17.9 162 107-277 99-278 (301)
453 KOG0889 Histone acetyltransfer 63.2 3.8E+02 0.0082 33.3 28.1 143 353-496 2739-2898(3550)
454 KOG4521 Nuclear pore complex, 62.4 2.3E+02 0.005 30.7 19.0 214 116-346 893-1133(1480)
455 cd02683 MIT_1 MIT: domain cont 62.1 17 0.00038 24.6 4.0 14 432-445 20-33 (77)
456 PHA02537 M terminase endonucle 61.6 21 0.00045 30.3 5.2 103 52-173 92-210 (230)
457 PRK15490 Vi polysaccharide bio 61.0 62 0.0013 31.9 8.8 77 229-307 22-98 (578)
458 PF02064 MAS20: MAS20 protein 61.0 14 0.00029 27.7 3.5 32 46-77 66-97 (121)
459 PF10952 DUF2753: Protein of u 60.0 64 0.0014 24.1 6.6 27 454-480 52-78 (140)
460 KOG0546 HSP90 co-chaperone CPR 59.9 9.9 0.00021 34.1 3.1 72 221-292 281-352 (372)
461 COG4259 Uncharacterized protei 59.9 38 0.00082 24.1 5.2 53 129-181 58-112 (121)
462 cd02677 MIT_SNX15 MIT: domain 58.9 24 0.00053 23.7 4.2 30 43-72 6-35 (75)
463 cd02678 MIT_VPS4 MIT: domain c 58.8 22 0.00048 23.9 4.1 30 43-72 6-35 (75)
464 smart00101 14_3_3 14-3-3 homol 58.4 1.2E+02 0.0027 26.2 17.4 160 252-411 4-199 (244)
465 TIGR00985 3a0801s04tom mitocho 57.9 48 0.001 25.8 6.1 44 34-77 77-125 (148)
466 smart00745 MIT Microtubule Int 57.4 25 0.00055 23.6 4.3 30 43-72 8-37 (77)
467 KOG4014 Uncharacterized conser 57.1 1.1E+02 0.0023 25.0 15.8 79 248-329 33-117 (248)
468 PRK15490 Vi polysaccharide bio 56.6 75 0.0016 31.4 8.6 54 386-442 45-98 (578)
469 PF08238 Sel1: Sel1 repeat; I 56.3 31 0.00068 19.0 4.0 15 58-72 23-37 (39)
470 PF13226 DUF4034: Domain of un 56.3 1.4E+02 0.0031 26.3 10.3 35 434-468 115-149 (277)
471 PF13226 DUF4034: Domain of un 56.2 1.5E+02 0.0031 26.3 10.3 135 222-367 7-150 (277)
472 cd02684 MIT_2 MIT: domain cont 56.2 27 0.00058 23.5 4.1 30 43-72 6-35 (75)
473 PF13934 ELYS: Nuclear pore co 54.7 1.1E+02 0.0024 26.2 8.5 88 109-201 79-166 (226)
474 cd02684 MIT_2 MIT: domain cont 54.7 27 0.00058 23.5 3.9 15 432-446 20-34 (75)
475 cd02656 MIT MIT: domain contai 53.8 29 0.00063 23.2 4.1 28 45-72 8-35 (75)
476 KOG4459 Membrane-associated pr 53.8 75 0.0016 29.9 7.6 187 41-242 29-222 (471)
477 cd02678 MIT_VPS4 MIT: domain c 53.5 30 0.00065 23.2 4.0 14 432-445 20-33 (75)
478 PF07219 HemY_N: HemY protein 53.0 82 0.0018 23.0 6.6 44 220-263 64-107 (108)
479 PRK12798 chemotaxis protein; R 52.8 2E+02 0.0044 27.0 23.6 164 283-448 112-287 (421)
480 PHA02537 M terminase endonucle 52.6 43 0.00094 28.5 5.6 19 432-450 192-210 (230)
481 PF14929 TAF1_subA: TAF RNA Po 52.3 2.5E+02 0.0054 27.9 20.0 279 212-514 130-441 (547)
482 PF07219 HemY_N: HemY protein 52.2 42 0.0009 24.6 4.9 33 40-72 56-88 (108)
483 KOG4279 Serine/threonine prote 52.0 87 0.0019 31.7 8.1 131 228-359 256-409 (1226)
484 COG3014 Uncharacterized protei 51.3 1.9E+02 0.0042 26.3 12.6 155 335-510 40-252 (449)
485 KOG4151 Myosin assembly protei 51.1 52 0.0011 33.3 6.6 56 397-453 107-162 (748)
486 cd02682 MIT_AAA_Arch MIT: doma 50.6 76 0.0016 21.4 6.5 26 218-243 9-34 (75)
487 smart00671 SEL1 Sel1-like repe 50.2 40 0.00086 18.0 3.9 11 332-342 21-31 (36)
488 smart00745 MIT Microtubule Int 49.8 36 0.00078 22.9 4.1 14 432-445 22-35 (77)
489 PF08626 TRAPPC9-Trs120: Trans 49.8 2.9E+02 0.0063 30.9 12.8 81 432-512 359-472 (1185)
490 cd00280 TRFH Telomeric Repeat 49.6 1.4E+02 0.0031 24.3 9.3 66 231-297 85-158 (200)
491 KOG2066 Vacuolar assembly/sort 49.4 3.1E+02 0.0068 28.2 19.5 324 6-370 361-710 (846)
492 PF14689 SPOB_a: Sensor_kinase 49.0 69 0.0015 20.5 5.0 26 386-411 26-51 (62)
493 KOG4151 Myosin assembly protei 48.4 1.2E+02 0.0026 30.8 8.6 95 222-316 60-160 (748)
494 PF05053 Menin: Menin; InterP 48.3 2.5E+02 0.0054 27.7 10.2 25 454-478 320-344 (618)
495 PF05053 Menin: Menin; InterP 48.1 1.6E+02 0.0034 28.9 8.9 47 333-379 296-347 (618)
496 KOG1811 Predicted Zn2+-binding 48.0 1.7E+02 0.0038 28.8 9.2 65 118-184 566-631 (1141)
497 cd00280 TRFH Telomeric Repeat 47.8 1.5E+02 0.0033 24.2 8.9 41 388-429 116-156 (200)
498 KOG4056 Translocase of outer m 47.4 58 0.0013 24.8 4.9 45 35-79 69-117 (143)
499 KOG1497 COP9 signalosome, subu 47.2 2.2E+02 0.0047 25.7 14.4 94 217-310 105-211 (399)
500 COG3107 LppC Putative lipoprot 46.0 3E+02 0.0065 26.9 14.1 63 109-172 100-164 (604)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-50 Score=356.20 Aligned_cols=460 Identities=16% Similarity=0.128 Sum_probs=382.2
Q ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCccc---ccccCChhHHHHHHHHHHHh
Q 010276 44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSF---NVSAINENEVKYKIASCHFA 120 (514)
Q Consensus 44 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~ 120 (514)
.....++.-.++.|+|++|++....+-..+|.+......++.++.+..+.++...-. ....+.-.+.+-.+|.++-.
T Consensus 49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 49 DDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 347789999999999999999999999999999988888888877665555544322 22445567888899999999
Q ss_pred cCCHHHHHHHHhc-CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccC
Q 010276 121 LGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTP 199 (514)
Q Consensus 121 ~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 199 (514)
.|++++|+..++. +...|+..++|..+|.++...|+.+.|..+|..+++++|+...+...++.+....|...++.....
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 9999999999998 556699999999999999999999999999999999999999999888877766665544433333
Q ss_pred CcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC
Q 010276 200 NRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID 279 (514)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 279 (514)
+..... +.-.+.+-.+|.++...|+...|+..|+++++.+|..+++++++|.+|...+.+++|+.+|.+++...
T Consensus 209 kAi~~q------p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 209 KAIETQ------PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHhhC------CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 333222 22223334558888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHH
Q 010276 280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGN 358 (514)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 358 (514)
|.+..++.++|.+|..+|..+-|+..|+++++..|+.++++.+++..+.. |+..+|..+|.+++...|.++++.+++|+
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888877 88888888888888888888888888888
Q ss_pred HHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHH
Q 010276 359 LLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKA 437 (514)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A 437 (514)
++.++|.+++|...|.++++..|+. .+..++|.+|.++|++++|+.+|++++.+.|..++++.++|.+|..+ |+...|
T Consensus 363 i~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~-g~v~~A 441 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEM-GDVSAA 441 (966)
T ss_pred HHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHh-hhHHHH
Confidence 8888888888888888888888887 77888888888888888888888888888888888888888888888 888888
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHH
Q 010276 438 KKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEA 510 (514)
Q Consensus 438 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 510 (514)
+.+|.+++..+|...+++.+||.+|...|+..+|+..|+.++++.|+.+ ++.++..++.-..++.+=-+.+++
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 8888888888888888888888888888888888888888888888864 888888777666555544444443
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-50 Score=355.98 Aligned_cols=437 Identities=15% Similarity=0.143 Sum_probs=400.8
Q ss_pred hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCC----------------C----------ChhhhHHHHHHHHhhHhhhh
Q 010276 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGE----------------T----------SPHLKAENLIILGDSLFRDR 57 (514)
Q Consensus 4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~----------------~----------~~~~~~~~~~~~g~~~~~~g 57 (514)
..+.++.++..|+|.+|...++.+....+.+.. . ..+.-++++..+|+++-..|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 567788999999999999988876433221100 0 11334688999999999999
Q ss_pred hHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCccc-c--cccCChhHHHHHHHHHHHhcCCHHHHHHHHhc-
Q 010276 58 EYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSF-N--VSAINENEVKYKIASCHFALGETKAAIVEMEG- 133 (514)
Q Consensus 58 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~-~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~- 133 (514)
++.+|+..|+.+++++|+..+++..++.+++..|+.+.|.+.| . ...|+...++..+|..+-..|+..+|...+.+
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 9999999999999999999999999999999999999999988 2 35566688889999999999999999988777
Q ss_pred CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCch
Q 010276 134 IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSS 213 (514)
Q Consensus 134 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (514)
+...|...-+|..+|.++..+|+...|+..|+++++++|...+++..|
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNL-------------------------------- 258 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINL-------------------------------- 258 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhH--------------------------------
Confidence 555688889999999999999999999999999999999999999877
Q ss_pred hHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 010276 214 RWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLL 293 (514)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 293 (514)
|.++-..+.+++|+.+|.+++...|++..++.++|.+|+.+|..+-|+..|+++++.+|..++++.++|..+
T Consensus 259 --------GnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanAL 330 (966)
T KOG4626|consen 259 --------GNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANAL 330 (966)
T ss_pred --------HHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHH
Q 010276 294 KVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIA 372 (514)
Q Consensus 294 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 372 (514)
-..|+..+|..+|.+++...|+++++..++|.++.. |.+++|...|.++++..|+...++.++|.+|.++|++++|+.+
T Consensus 331 kd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~ 410 (966)
T KOG4626|consen 331 KDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMC 410 (966)
T ss_pred HhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276 373 FRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (514)
Q Consensus 373 ~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 451 (514)
|++++++.|.. +++.++|..|-.+|+.+.|+..|.+++..+|..++++.++|.+|... |+..+|+..|+.++++.|+.
T Consensus 411 YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs-Gni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 411 YKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDS-GNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred HHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc-CCcHHHHHHHHHHHccCCCC
Confidence 99999999999 99999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276 452 LGAALALAELHVIEGRNGDAVSLLERYLKD 481 (514)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (514)
++++.+++.++.-..++.+=-+.+++..++
T Consensus 490 pdA~cNllh~lq~vcdw~D~d~~~~kl~si 519 (966)
T KOG4626|consen 490 PDAYCNLLHCLQIVCDWTDYDKRMKKLVSI 519 (966)
T ss_pred chhhhHHHHHHHHHhcccchHHHHHHHHHH
Confidence 999999999987776666555555555443
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.8e-43 Score=369.51 Aligned_cols=490 Identities=18% Similarity=0.186 Sum_probs=283.1
Q ss_pred HHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhh
Q 010276 7 QITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRS 86 (514)
Q Consensus 7 ~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 86 (514)
.+..+...|+++.|......++...+ ..+..+..+|.++...|++++|+.+|+++++.+|+++..+..++.+
T Consensus 335 la~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 406 (899)
T TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLDP--------DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGIS 406 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34555666777777666665544221 1233556666666666666666666666666666666666666666
Q ss_pred hhhccccCCCCcccc-------------------------------------cccCChhHHHHHHHHHHHhcCCHHHHHH
Q 010276 87 SLSTSNRSSSPNSFN-------------------------------------VSAINENEVKYKIASCHFALGETKAAIV 129 (514)
Q Consensus 87 ~~~~~~~~~a~~~~~-------------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~ 129 (514)
+...|+.+.|...+. ...|+++.++..+|.++...|++++|+.
T Consensus 407 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 407 KLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred HHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 666665555544431 1223344555566666666666666666
Q ss_pred HHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCC
Q 010276 130 EMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFD 208 (514)
Q Consensus 130 ~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (514)
.++++ ...|.++..++.+|.++...|++++|+..|++++..+|.+..++..++.++...++..++...........
T Consensus 487 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 563 (899)
T TIGR02917 487 AFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--- 563 (899)
T ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 66653 22355555666666666666666666666666666666666666666555555555444433333322211
Q ss_pred cCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHH
Q 010276 209 HLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288 (514)
Q Consensus 209 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 288 (514)
+......+..+..+...|++++|+..++++++..|.++.++..+|.++...|++++|+..|+++++.+|.++..+..
T Consensus 564 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 640 (899)
T TIGR02917 564 ---PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLL 640 (899)
T ss_pred ---ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 22222334456666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChH
Q 010276 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE 367 (514)
Q Consensus 289 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (514)
++.++...|++++|...+++++...|++...+..++.++.. |++++|+..++.+....|.++..+..+|.++...|+++
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 720 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYP 720 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHH
Confidence 66666666666666666666666666655555555554444 55555555555555555545555555555555555555
Q ss_pred HHHHHHHHhHhhcCChH----------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 010276 368 AAVIAFRGAQELRPDLR----------------------------------SYQGLVHSYLQFSKVKEALYAAREAMKAM 413 (514)
Q Consensus 368 ~A~~~~~~~~~~~~~~~----------------------------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 413 (514)
+|+..|++++...|+.. ++..+|.++...|++++|+..|+++++..
T Consensus 721 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 721 AAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 55555555554444443 44555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-hHHHHHH
Q 010276 414 PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLA 492 (514)
Q Consensus 414 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~ 492 (514)
|+++.++..+|.++... |+ .+|+..+++++...|+++..+..+|.++...|++++|+.+++++++..|.+ .++..++
T Consensus 801 p~~~~~~~~l~~~~~~~-~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 878 (899)
T TIGR02917 801 PDNAVVLNNLAWLYLEL-KD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLA 878 (899)
T ss_pred CCCHHHHHHHHHHHHhc-Cc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 55555555555555554 55 455555555555555555555556666666666666666666666666644 3666666
Q ss_pred HHHHHhccHHHHHHHHHHHh
Q 010276 493 QVFAATNMLQEALSHYEAAL 512 (514)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~al 512 (514)
.++...|++++|++.+++++
T Consensus 879 ~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 879 LALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 66666666666666666654
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.8e-43 Score=364.76 Aligned_cols=495 Identities=17% Similarity=0.150 Sum_probs=356.6
Q ss_pred hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhh
Q 010276 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (514)
Q Consensus 4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (514)
++..+..+...|+++.|..+.+.++... +....++..+|.+++..|++++|+..|++++..+|+++..+..+
T Consensus 162 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~ 233 (899)
T TIGR02917 162 KLGLAQLALAENRFDEARALIDEVLTAD--------PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLAL 233 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 3445556667777777777766665532 22345788888888889999999999999988888888888888
Q ss_pred hhhhhhccccCCCCcccc---cccCChhHHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhh
Q 010276 84 SRSSLSTSNRSSSPNSFN---VSAINENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRG 159 (514)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~ 159 (514)
+.++...|++++|...+. ...|+++.+.+..|.++...|++++|+..++++ ...|.....+..+|.++...|++++
T Consensus 234 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~ 313 (899)
T TIGR02917 234 ATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQ 313 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHH
Confidence 888888888888877662 244566777888888888889999999888885 3346777788888888999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHH
Q 010276 160 AVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFA 239 (514)
Q Consensus 160 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 239 (514)
|+..++++++..|.+..++..++.+....++...+........... +.........|.++...|++++|...|+
T Consensus 314 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 387 (899)
T TIGR02917 314 AYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD------PDDPAALSLLGEAYLALGDFEKAAEYLA 387 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999888888888888878887777666555544322 2233445567888888999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHH
Q 010276 240 ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEV 319 (514)
Q Consensus 240 ~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 319 (514)
+++..+|+++..+..+|.++...|++++|+..++++++.+|........++..+...|++++|...++++....|+++..
T Consensus 388 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 467 (899)
T TIGR02917 388 KATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASL 467 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 99888888888888888888888888888888888888877766666666666666666666666666666666666666
Q ss_pred HHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcC
Q 010276 320 FVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFS 397 (514)
Q Consensus 320 ~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 397 (514)
+..+|.++.. |++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++...|++ .++..++.++...|
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 547 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcC
Confidence 6666666665 666677777777766666666666666666666666666666666666666665 55666666666666
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHH
Q 010276 398 KVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER 477 (514)
Q Consensus 398 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (514)
++++|...+++++..+|.+...+..++.++... |++++|+..++++++..|.++.++..+|.++...|++++|+..|++
T Consensus 548 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGK-GQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred CHHHHHHHHHHHHHhCccchhHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666666666666666666666666665 6666666666666666666666666666666666666666666666
Q ss_pred HHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 478 YLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 478 ~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
+++..|++. .+..+|.++...|++++|...|+++++
T Consensus 627 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 627 LLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666655543 555666666666666666666665543
No 5
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.1e-41 Score=353.09 Aligned_cols=509 Identities=15% Similarity=0.095 Sum_probs=415.2
Q ss_pred chHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCC--------hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcc
Q 010276 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETS--------PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYK 74 (514)
Q Consensus 3 ~~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 74 (514)
.+...+..++..|+++.|...++.++...+.++... ........+.+|+.+...|++++|+..|++++..+|
T Consensus 64 ~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p 143 (1157)
T PRK11447 64 VIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAP 143 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC
Confidence 455667778888999999988888877654433210 011122357789999999999999999999999988
Q ss_pred cCchhhhh-hhhhhhhccccCCCCccc---ccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCc-----------
Q 010276 75 IVPKQNST-SSRSSLSTSNRSSSPNSF---NVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKAR----------- 139 (514)
Q Consensus 75 ~~~~~~~~-~~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----------- 139 (514)
.++..... ...+....++.++|...+ ....|++..+++.+|.++...|++++|+..++++...+.
T Consensus 144 ~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~ 223 (1157)
T PRK11447 144 PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYG 223 (1157)
T ss_pred CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence 77643222 222333457777777777 236688899999999999999999999999887532211
Q ss_pred ------------------------cHH--------------------HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH
Q 010276 140 ------------------------NLQ--------------------MSLLMAKLYRNSRHNRGAVACYKECLRHCPFFI 175 (514)
Q Consensus 140 ------------------------~~~--------------------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 175 (514)
... ....+|.++...|++++|+..|+++++.+|++.
T Consensus 224 ~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~ 303 (1157)
T PRK11447 224 QIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDS 303 (1157)
T ss_pred HHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 000 001347888899999999999999999999999
Q ss_pred HHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhH---------HhHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 010276 176 EAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRW---------LHRYVEAQCCIASNDYKGGLELFAELLQRFP 246 (514)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p 246 (514)
.++..++.++...++..++.....+.+...+.... ...| ......|..+...|++++|+..|++++..+|
T Consensus 304 ~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~-~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P 382 (1157)
T PRK11447 304 EALGALGQAYSQQGDRARAVAQFEKALALDPHSSN-RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN 382 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc-hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999888877766666554443211 1112 2234558888999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHH-----------------------------------
Q 010276 247 NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM----------------------------------- 291 (514)
Q Consensus 247 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~----------------------------------- 291 (514)
+++.++..+|.++...|++++|++.|+++++.+|.+..++..++.
T Consensus 383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999998776655444
Q ss_pred -------HHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhc
Q 010276 292 -------LLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM 363 (514)
Q Consensus 292 -------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (514)
++...|++++|+..++++++.+|+++.+++.++.++.. |++++|+..+++++...|.++..++.++..+...
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~ 542 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGS 542 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence 34467999999999999999999999999999998888 9999999999999999999998888888777777
Q ss_pred CChHHHHHHHHHhH----------------------------------------hhcCCh-HHHHHHHHHHHhcCCHHHH
Q 010276 364 KRPEAAVIAFRGAQ----------------------------------------ELRPDL-RSYQGLVHSYLQFSKVKEA 402 (514)
Q Consensus 364 ~~~~~A~~~~~~~~----------------------------------------~~~~~~-~~~~~l~~~~~~~~~~~~A 402 (514)
+++++|+..++++. +..|.+ ..+..+|.++...|++++|
T Consensus 543 ~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A 622 (1157)
T PRK11447 543 DRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAA 622 (1157)
T ss_pred CCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence 87777777665431 124555 5678899999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhC
Q 010276 403 LYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW 482 (514)
Q Consensus 403 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (514)
+..|+++++..|+++.++..++.++... |++++|+..++++++..|+++.++..+|.++...|++++|+..+++++...
T Consensus 623 ~~~y~~al~~~P~~~~a~~~la~~~~~~-g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 623 RAAYQRVLTREPGNADARLGLIEVDIAQ-GDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 9999999999999999999999999998 999999999999999999999999999999999999999999999999887
Q ss_pred CCc-------hHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 483 ADD-------SLHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 483 ~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
|++ .++..+|.++...|++++|+..|++++.
T Consensus 702 ~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 702 KSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 643 2556679999999999999999999873
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=8.1e-41 Score=348.67 Aligned_cols=500 Identities=14% Similarity=0.082 Sum_probs=341.1
Q ss_pred chHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhh-
Q 010276 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNS- 81 (514)
Q Consensus 3 ~~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~- 81 (514)
.++++++.....++++-|......++.+.+ .+++++..++.++...|++++|.+.++++++..|+++....
T Consensus 30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p--------~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~ 101 (1157)
T PRK11447 30 QLLEQVRLGEATHREDLVRQSLYRLELIDP--------NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSS 101 (1157)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHccCC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 467778888888888888887777766432 23456788888888888888888888888888888876542
Q ss_pred ---------------hhhhhhhhccccCCCCccccc---ccCChhHH-HHHHHHHHHhcCCHHHHHHHHhcCCC-CCccH
Q 010276 82 ---------------TSSRSSLSTSNRSSSPNSFNV---SAINENEV-KYKIASCHFALGETKAAIVEMEGIPS-KARNL 141 (514)
Q Consensus 82 ---------------~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~ 141 (514)
.++..+...|+.++|...+.. ..|++... ......+....|++++|+..++++.. .|.++
T Consensus 102 ~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~ 181 (1157)
T PRK11447 102 RTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNT 181 (1157)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCH
Confidence 223344555555555555521 11222211 11112222234566666666666432 25566
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHH-hcc--CcccHhHHHhccCCcCCCCC------------
Q 010276 142 QMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAE-LGA--TPKDIISLFAQTPNRSGRAP------------ 206 (514)
Q Consensus 142 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~-~~~--~~~~~~~~~~~~~~~~~~~~------------ 206 (514)
.+++.+|.++...|++++|+..+++++...+....+...... +.. ........+...........
T Consensus 182 ~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~ 261 (1157)
T PRK11447 182 GLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQ 261 (1157)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 666666666666666666666666665543332221111100 000 00000011110000000000
Q ss_pred -CCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH-
Q 010276 207 -FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT- 284 (514)
Q Consensus 207 -~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~- 284 (514)
....++. .....+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++.+|++..
T Consensus 262 ~~~~~dp~--~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~ 339 (1157)
T PRK11447 262 QKQLADPA--FRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339 (1157)
T ss_pred HHhccCcc--hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence 0000010 111244788889999999999999999999999999999999999999999999999999999887642
Q ss_pred -------------HHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCc
Q 010276 285 -------------YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI 350 (514)
Q Consensus 285 -------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~ 350 (514)
.....+.++...|++++|+..|++++..+|+++.++..+|.++.. |++++|+..|+++++.+|.+.
T Consensus 340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~ 419 (1157)
T PRK11447 340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT 419 (1157)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 123457778888999999999999999999988888888888887 889999999999998888877
Q ss_pred hhHHHHH------------------------------------------HHHHhcCChHHHHHHHHHhHhhcCCh-HHHH
Q 010276 351 PGYIMKG------------------------------------------NLLLSMKRPEAAVIAFRGAQELRPDL-RSYQ 387 (514)
Q Consensus 351 ~~~~~~~------------------------------------------~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~ 387 (514)
.++..++ .++...|++++|+..|+++++.+|++ .+++
T Consensus 420 ~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~ 499 (1157)
T PRK11447 420 NAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTY 499 (1157)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 6654443 34456788889999999999988887 7788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH-----------------------------------------------
Q 010276 388 GLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL----------------------------------------------- 420 (514)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~----------------------------------------------- 420 (514)
.+|.++...|++++|+..+++++...|+++..+
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 888999999999999988888888777765543
Q ss_pred ---------------------------HHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHH
Q 010276 421 ---------------------------KLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVS 473 (514)
Q Consensus 421 ---------------------------~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 473 (514)
..+|.++... |++++|+..|+++++.+|+++.++..++.++...|++++|+.
T Consensus 580 a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~-g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQR-GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3455556666 777788888888888888888888888888888888888888
Q ss_pred HHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 474 LLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 474 ~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
.++++++..|++. ++..+|.++...|++++|.+.|++++.
T Consensus 659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 8888777777664 677778888888888888888877764
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.8e-39 Score=318.82 Aligned_cols=410 Identities=18% Similarity=0.141 Sum_probs=301.7
Q ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcC
Q 010276 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALG 122 (514)
Q Consensus 43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 122 (514)
+..+..+|..+++.|+|++|+..|++++...|+ +..+..+|.|+..+|
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~--------------------------------~~~~~n~a~~~~~l~ 174 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD--------------------------------PVYYSNRAACHNALG 174 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--------------------------------hHHHHHHHHHHHHhC
Confidence 557889999999999999999999999999773 235678889999999
Q ss_pred CHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCc---ccHhHHHhcc
Q 010276 123 ETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATP---KDIISLFAQT 198 (514)
Q Consensus 123 ~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---~~~~~~~~~~ 198 (514)
++++|+..++++ ...|.+..+++.+|.++...|++++|+..|..+...++.+......+....... ......++..
T Consensus 175 ~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~ 254 (615)
T TIGR00990 175 DWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK 254 (615)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999985 445889999999999999999999999999887776665433222111110000 0000000000
Q ss_pred CCc-----------------CC--CC-CCCcCCchhHHhHHHHHHHH---HHhcCHHHHHHHHHHHHHh---CCCcHHHH
Q 010276 199 PNR-----------------SG--RA-PFDHLDSSRWLHRYVEAQCC---IASNDYKGGLELFAELLQR---FPNNIHIL 252 (514)
Q Consensus 199 ~~~-----------------~~--~~-~~~~~~~~~~~~~~~~a~~~---~~~~~~~~A~~~~~~~~~~---~p~~~~~~ 252 (514)
... .. .. .....++........++... ...++|++|+..|++++.. .|....++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~ 334 (615)
T TIGR00990 255 PENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIAL 334 (615)
T ss_pred CCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 000 00 00 00000111111111222221 2346788888888888865 36667788
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cC
Q 010276 253 LEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KD 331 (514)
Q Consensus 253 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 331 (514)
..+|.++...|++++|+..|+++++.+|.+...+..+|.++...|++++|+..++++++.+|+++.++..+|.++.. |+
T Consensus 335 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 414 (615)
T TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE 414 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888887777 88
Q ss_pred hhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010276 332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAM 410 (514)
Q Consensus 332 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (514)
+++|+..|++++.++|++...+..+|.++...|++++|+..|++++...|++ .++..+|.++...|++++|+..|++++
T Consensus 415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888887 678888888888888888888888888
Q ss_pred hhCCCCHHH------HHHHHHHH-HhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCC
Q 010276 411 KAMPQSAKA------LKLVGDVH-ASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA 483 (514)
Q Consensus 411 ~~~p~~~~~------~~~l~~~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 483 (514)
.+.|++... +...+..+ ... |++++|+..+++++.++|++..++..+|.++...|++++|+.+|++++++.+
T Consensus 495 ~l~p~~~~~~~~~~~l~~~a~~~~~~~-~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 495 ELEKETKPMYMNVLPLINKALALFQWK-QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred hcCCccccccccHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 887764322 22223333 334 8888888888888888888888888888888888888888888888888876
Q ss_pred Cc
Q 010276 484 DD 485 (514)
Q Consensus 484 ~~ 485 (514)
..
T Consensus 574 ~~ 575 (615)
T TIGR00990 574 TE 575 (615)
T ss_pred cH
Confidence 54
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=3.6e-36 Score=295.51 Aligned_cols=424 Identities=14% Similarity=0.073 Sum_probs=326.0
Q ss_pred hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhh
Q 010276 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (514)
Q Consensus 4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (514)
+.+....++..|+|+.|+...+..+...+ .+..+..+|.++...|+|++|+..++++++.+|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p---------~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-------- 192 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKP---------DPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-------- 192 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--------
Confidence 45667788999999999999888776432 1347899999999999999999999999999884
Q ss_pred hhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-Cc-cHHHHHHHHHHHHhcCChhhHH
Q 010276 84 SRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSK-AR-NLQMSLLMAKLYRNSRHNRGAV 161 (514)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~ 161 (514)
...+++.+|.++..+|++++|+..+..+... +. +......+...+. ..+.
T Consensus 193 -----------------------~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~a~ 244 (615)
T TIGR00990 193 -----------------------YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK-----KFAE 244 (615)
T ss_pred -----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH-----HHHH
Confidence 4556677777777777777777766553211 11 1111111111111 2333
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhc------------------------------------cCcccHhHHHhccCCcCCCC
Q 010276 162 ACYKECLRHCPFFIEAITALAELG------------------------------------ATPKDIISLFAQTPNRSGRA 205 (514)
Q Consensus 162 ~~~~~~l~~~p~~~~~~~~l~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~ 205 (514)
......++..|.+...+..++... ...+.+.++.......+...
T Consensus 245 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~ 324 (615)
T TIGR00990 245 SKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG 324 (615)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Confidence 444444444444433332222211 01122233333333322222
Q ss_pred CCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHH
Q 010276 206 PFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTY 285 (514)
Q Consensus 206 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 285 (514)
...+.....+..+|.++...|++++|+..+++++..+|+++..+..+|.++...|++++|+..|+++++.+|+++.+
T Consensus 325 ---~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 401 (615)
T TIGR00990 325 ---KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDI 401 (615)
T ss_pred ---CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 12355566678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcC
Q 010276 286 MDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK 364 (514)
Q Consensus 286 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (514)
+..+|.++...|++++|+..|++++..+|++...+..+|.++.. |++++|+..+++++...|.++.++..+|.++...|
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999998888 99999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhHhhcCCh-HH------HHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHH
Q 010276 365 RPEAAVIAFRGAQELRPDL-RS------YQGLVHS-YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREK 436 (514)
Q Consensus 365 ~~~~A~~~~~~~~~~~~~~-~~------~~~l~~~-~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 436 (514)
++++|+..|++++.+.|+. .. +...+.. +...|++++|+..+++++..+|++..++..+|.++... |++++
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~-g~~~e 560 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQ-GDVDE 560 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-cCHHH
Confidence 9999999999999998874 22 2233333 34479999999999999999999999999999999998 99999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276 437 AKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD 484 (514)
Q Consensus 437 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 484 (514)
|+.+|++++++.+...+.. ....+.+|.....+..+..|.
T Consensus 561 Ai~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~~~~~ 600 (615)
T TIGR00990 561 ALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQEDYPV 600 (615)
T ss_pred HHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999987754422 222455666666666555554
No 9
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-34 Score=243.47 Aligned_cols=492 Identities=28% Similarity=0.379 Sum_probs=415.2
Q ss_pred hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCC-ChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhh
Q 010276 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGET-SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (514)
Q Consensus 4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 82 (514)
++..++.+...+.++....++..+.+++.+++.. +++.....+..+.+..++.++|..|...|..++...
T Consensus 3 ~ia~~~~~~~~~l~e~v~~~~~ll~Tvs~n~~~~~~~~~~yqll~yl~~~~~h~r~yr~a~~~~~~~~~~~--------- 73 (564)
T KOG1174|consen 3 LFANAKKLYDHKLYECVIPAADLLRTVLKNDRYVATLDVEYQVLLYLLNANYKERNYRAALRHFDEIIHKR--------- 73 (564)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhHHHhcCCccccCchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh---------
Confidence 4567778888888888888888888877766654 667777777888888888899999999999888763
Q ss_pred hhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHH
Q 010276 83 SSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVA 162 (514)
Q Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 162 (514)
...+....+....-.. ....+.+.+..+..+.||...++-+.|+..+..++.....+.....++..+-.-++..++.-
T Consensus 74 ~s~~r~s~~~~~s~~~--S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl 151 (564)
T KOG1174|consen 74 RLMMRHKNAVLVAIES--SYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVL 151 (564)
T ss_pred Hhhccccccccccccc--cCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHH
Confidence 0111111111111111 12345678899999999999999999999999998888899999999999988888889999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHH--HHHHH
Q 010276 163 CYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGL--ELFAE 240 (514)
Q Consensus 163 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~--~~~~~ 240 (514)
.|...+..+|--......+..+.+...+..+..-..... .+..+|...+..+......++...|. .++-.
T Consensus 152 ~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~--------~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le 223 (564)
T KOG1174|consen 152 AYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATV--------PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLH 223 (564)
T ss_pred hhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheec--------CCCccHHHHHHHHHHHHHhcccchhhhHHHHHH
Confidence 999999999987777777777776665555444333332 23455666666666666666655554 45555
Q ss_pred HHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHH
Q 010276 241 LLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVF 320 (514)
Q Consensus 241 ~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 320 (514)
.....|+|.+.+..+|.+++..|++++|+..|+++..++|......-.+|.++...|+++.-..+...++........-|
T Consensus 224 ~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~w 303 (564)
T KOG1174|consen 224 DNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHW 303 (564)
T ss_pred hhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999887777777
Q ss_pred HHHHHH-HhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCC
Q 010276 321 VALSVL-WERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSK 398 (514)
Q Consensus 321 ~~l~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 398 (514)
+.-+.. +..+++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.+..+.|.. +.|..+..+|...|+
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence 766664 444999999999999999999999999999999999999999999999999999988 999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHH
Q 010276 399 VKEALYAAREAMKAMPQSAKALKLVG-DVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER 477 (514)
Q Consensus 399 ~~~A~~~~~~~~~~~p~~~~~~~~l~-~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (514)
+.+|....+.++...|.++..+..+| .++.....-.++|.++++++++++|....+...++.++...|.+++++..+++
T Consensus 384 ~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 384 FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 99999999999999999999999997 66655445679999999999999999999999999999999999999999999
Q ss_pred HHhhCCCchHHHHHHHHHHHhccHHHHHHHHHHHhcC
Q 010276 478 YLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514 (514)
Q Consensus 478 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~l 514 (514)
.+...|++..+..||+++...+.+.+|+++|..|+.+
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999864
No 10
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=4.4e-35 Score=291.90 Aligned_cols=492 Identities=11% Similarity=-0.040 Sum_probs=293.2
Q ss_pred hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhh
Q 010276 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (514)
Q Consensus 4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (514)
.+.........|+++.|+.....++...+.+ +.+++.++..|+..|++++|+...+++++.+|++......+
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n--------~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L 118 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQVPDN--------IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL 118 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 3455556667789998888888887743322 55779999999999999999999999999999888877776
Q ss_pred hhhhhhccccCCCCccc---ccccCChhHHHHHHHHH--------HHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHH
Q 010276 84 SRSSLSTSNRSSSPNSF---NVSAINENEVKYKIASC--------HFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYR 152 (514)
Q Consensus 84 ~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~la~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 152 (514)
+.+ ++.++|...+ ....|++.++++.++.. |.+.++..+++. ...+...|......+.++++|.
T Consensus 119 a~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 119 AAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred HHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHH
Confidence 555 6777777666 23667778888887777 666666666665 3333333344445566688888
Q ss_pred hcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccC-------------------------------cccHhHHHh---cc
Q 010276 153 NSRHNRGAVACYKECLRHCPFFIEAITALAELGAT-------------------------------PKDIISLFA---QT 198 (514)
Q Consensus 153 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-------------------------------~~~~~~~~~---~~ 198 (514)
.+|++++|+..+.++.+..|.+......|+.++.. .++...+.. ..
T Consensus 194 ~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 194 YLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred HHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 88888888888888888888777766666554443 111111111 11
Q ss_pred CCcCCCCC---------------------------------------------------------------------CC-
Q 010276 199 PNRSGRAP---------------------------------------------------------------------FD- 208 (514)
Q Consensus 199 ~~~~~~~~---------------------------------------------------------------------~~- 208 (514)
.......+ ..
T Consensus 274 ~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 353 (987)
T PRK09782 274 KPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSV 353 (987)
T ss_pred cccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcc
Confidence 11110100 00
Q ss_pred ----------------cCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCC---h-
Q 010276 209 ----------------HLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGK---N- 265 (514)
Q Consensus 209 ----------------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~---~- 265 (514)
...+.+...+...+......|++++|..+++++....++. ..+...++.+|...+. .
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 0001111111122333444555555555555554421111 1122233333333322 1
Q ss_pred ------------------------HHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHH
Q 010276 266 ------------------------DEAILNFEKVRSIDPY--IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEV 319 (514)
Q Consensus 266 ------------------------~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 319 (514)
..+...+.+++...|. ++.++..+|.++.. +++++|+..+.+++...|++..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~- 511 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ- 511 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH-
Confidence 1112222223333344 56666666666665 5666666666666666665432
Q ss_pred HHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcC
Q 010276 320 FVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFS 397 (514)
Q Consensus 320 ~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 397 (514)
...++..+.. |++++|+..++++....|. ...+..+|.++...|++++|+.+++++++..|+. ..+..++......|
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence 3333443333 6666666666666554443 3445566666666666666666666666666655 33444444555556
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHH
Q 010276 398 KVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER 477 (514)
Q Consensus 398 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (514)
++++|+..++++++.+|+ +..+..+|.++.+. |++++|+..|++++.++|+++.++.++|.++...|++++|+..+++
T Consensus 591 r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~l-G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 591 QPELALNDLTRSLNIAPS-ANAYVARATIYRQR-HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666666666664 66666666666666 6666666666666666666666666666666666666666666666
Q ss_pred HHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 478 YLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 478 ~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
+++..|++. +++++|.++...|++++|+.+|+++++
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 666666653 666666666666666666666666654
No 11
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.1e-36 Score=278.02 Aligned_cols=462 Identities=18% Similarity=0.170 Sum_probs=289.4
Q ss_pred hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhh
Q 010276 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (514)
Q Consensus 4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (514)
++-++...+..|+|..+..+-..++.+.+ ...+...+.+|.++++.|+.+.|+..|+++++++|.+..+..++
T Consensus 167 LlGkA~i~ynkkdY~~al~yyk~al~inp-------~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L 239 (1018)
T KOG2002|consen 167 LLGKARIAYNKKDYRGALKYYKKALRINP-------ACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVAL 239 (1018)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCc-------ccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHH
Confidence 45566667777777777776666554322 22223456677888888888888888888888888777777777
Q ss_pred hhhhhhccccCCCC---ccc---ccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCccHHHHHHHHHHHHh
Q 010276 84 SRSSLSTSNRSSSP---NSF---NVSAINENEVKYKIASCHFALGETKAAIVEMEGIPS----KARNLQMSLLMAKLYRN 153 (514)
Q Consensus 84 ~~~~~~~~~~~~a~---~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~l~~~~~~ 153 (514)
+.+-+...+.+.-. ..+ ....+.+|.+...++..++..|+|..+..+...+.. .+.-.+.++.+|++|..
T Consensus 240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha 319 (1018)
T KOG2002|consen 240 GEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA 319 (1018)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 77666544432222 222 125567788888899988899999888888776422 23456678889999999
Q ss_pred cCChhhHHHHHHHHHhcCCCC-HHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHH
Q 010276 154 SRHNRGAVACYKECLRHCPFF-IEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYK 232 (514)
Q Consensus 154 ~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (514)
+|++++|..+|.++++.+|++ .-...++ |+.++..|+++
T Consensus 320 ~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl----------------------------------------gQm~i~~~dle 359 (1018)
T KOG2002|consen 320 QGDFEKAFKYYMESLKADNDNFVLPLVGL----------------------------------------GQMYIKRGDLE 359 (1018)
T ss_pred hccHHHHHHHHHHHHccCCCCccccccch----------------------------------------hHHHHHhchHH
Confidence 999999999999999888877 4445555 55555555555
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC----ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHH
Q 010276 233 GGLELFAELLQRFPNNIHILLEMAKVDAIIG----KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHD 308 (514)
Q Consensus 233 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 308 (514)
.|..+|+++++..|++.++...+|.+|...+ ..+.|..+..+++...|.+.++|..++.++....-+.. +..|..
T Consensus 360 ~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~ 438 (1018)
T KOG2002|consen 360 ESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGN 438 (1018)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHH
Confidence 5555555555555555555555555555543 34555555555555555555555555555443333322 444444
Q ss_pred Hhhc-----CCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHh-----cccC-----chhHHHHHHHHHhcCChHHHHHH
Q 010276 309 LLSI-----DPSRPEVFVALSVLWER-KDERGALSYAEKSIRI-----DERH-----IPGYIMKGNLLLSMKRPEAAVIA 372 (514)
Q Consensus 309 ~~~~-----~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~A~~~ 372 (514)
++.. .+-.++.+.++|.++.. |++.+|...|..++.. +++. ....+++|.++...++++.|.+.
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence 4421 22334455555554444 5555555555555443 1111 11245555555555555555555
Q ss_pred HHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC--------------------
Q 010276 373 FRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNA-------------------- 431 (514)
Q Consensus 373 ~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-------------------- 431 (514)
|..+++..|.+ .++..+|......++..+|...++.++..+..++.++..+|.++....
T Consensus 519 Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~ 598 (1018)
T KOG2002|consen 519 YKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKT 598 (1018)
T ss_pred HHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCC
Confidence 55555555555 455555544444555555555555555555444444444443332210
Q ss_pred ---------------------------CChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276 432 ---------------------------SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD 484 (514)
Q Consensus 432 ---------------------------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 484 (514)
+.+++|+..|.++++.+|.+..+-..+|.++...|++.+|+.+|.++.+...+
T Consensus 599 D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~ 678 (1018)
T KOG2002|consen 599 DAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD 678 (1018)
T ss_pred chhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh
Confidence 34577888888888888888888888888888888888888888888776653
Q ss_pred c-hHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 485 D-SLHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 485 ~-~~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
. ++|.++|.||..+|+|..|++.|+.+++
T Consensus 679 ~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 679 FEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred CCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 5888888888888888888888887764
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=2.1e-34 Score=281.59 Aligned_cols=349 Identities=13% Similarity=0.035 Sum_probs=308.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC-CCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcc
Q 010276 111 KYKIASCHFALGETKAAIVEMEGIP-SKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPK 189 (514)
Q Consensus 111 ~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 189 (514)
....+..+...|++++|+..++.+. ..|.++++++.+|.+....|++++|+..|++++..+|++..++..+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~l-------- 116 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLV-------- 116 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHH--------
Confidence 3455677788999999999999864 4489999999999999999999999999999999999999888666
Q ss_pred cHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHH
Q 010276 190 DIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAI 269 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~ 269 (514)
|.++...|++++|+..+++++..+|+++.++..++.++...|++++|+
T Consensus 117 --------------------------------a~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~ 164 (656)
T PRK15174 117 --------------------------------ASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAI 164 (656)
T ss_pred --------------------------------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHH
Confidence 888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC-hHHHHHHHHHHhh-cChhHHHHHHHHHHHhcc
Q 010276 270 LNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR-PEVFVALSVLWER-KDERGALSYAEKSIRIDE 347 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~ 347 (514)
..+++++...|+++.++..++ .+...|++++|+..+++++...|.. ......++.++.. |++++|+..+++++..+|
T Consensus 165 ~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p 243 (656)
T PRK15174 165 SLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL 243 (656)
T ss_pred HHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999999999988877664 4788999999999999999887644 3344445666655 999999999999999999
Q ss_pred cCchhHHHHHHHHHhcCChHH----HHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 010276 348 RHIPGYIMKGNLLLSMKRPEA----AVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL 422 (514)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~----A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 422 (514)
+++.++..+|.++...|++++ |+..|+++++.+|++ .++..+|.++...|++++|+..+++++..+|+++.++..
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~ 323 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAM 323 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999986 899999999999998 789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc------hHHHHHHHHHH
Q 010276 423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD------SLHVKLAQVFA 496 (514)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~ 496 (514)
+|.++... |++++|+..|++++..+|+++..+..+|.++...|++++|+..|+++++..|++ ++...+...+.
T Consensus 324 La~~l~~~-G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 324 YARALRQV-GQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQIS 402 (656)
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHH
Confidence 99999998 999999999999999999988877788999999999999999999999999875 23444444444
Q ss_pred HhccH
Q 010276 497 ATNML 501 (514)
Q Consensus 497 ~~g~~ 501 (514)
..+..
T Consensus 403 ~~~~~ 407 (656)
T PRK15174 403 AVNLP 407 (656)
T ss_pred hcCCc
Confidence 44444
No 13
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-33 Score=241.37 Aligned_cols=436 Identities=22% Similarity=0.280 Sum_probs=363.6
Q ss_pred HHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCH
Q 010276 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET 124 (514)
Q Consensus 45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 124 (514)
..+.+|.+++..+.|+.|.-.++...... .....-.+....|..++- -..+.+....+.+
T Consensus 80 ~~y~laks~fd~kEf~Raa~fL~~~~s~k-----~~FL~lysk~La~~kk~~---------------e~~~~~l~~~~~~ 139 (559)
T KOG1155|consen 80 DIYLLAKSYFDCKEFERAAFFLQNCKSKK-----SAFLRLYSKYLAGEKKSE---------------EEMAELLGRLESF 139 (559)
T ss_pred chhhhHhhhhhhHHHHHHHHHHHhcchHH-----HHHHHHHHHHHhhhHHHH---------------HHHHHhhccchhh
Confidence 45789999999999999999998876531 111111111111111111 1111122122222
Q ss_pred HHHH---HHHhc----C-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHh
Q 010276 125 KAAI---VEMEG----I-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFA 196 (514)
Q Consensus 125 ~~A~---~~~~~----~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 196 (514)
..-. ..+.+ . .....++-.+++.|.++.+.|....|+..|..++...|.++.+|..|..+............
T Consensus 140 ~~~~~~l~~L~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~ 219 (559)
T KOG1155|consen 140 SRINSELIELNKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV 219 (559)
T ss_pred hhhhhHHHHHhhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh
Confidence 2211 11111 1 12256778889999999999999999999999999999999999999888765554433332
Q ss_pred ccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 010276 197 QTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR-FPNNIHILLEMAKVDAIIGKNDEAILNFEKV 275 (514)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 275 (514)
.+. ....|+..+..+.++....+.++++.-++..... .|.++..-...|.+.....++++|+..|+.+
T Consensus 220 ~l~-----------~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei 288 (559)
T KOG1155|consen 220 GLP-----------SDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEI 288 (559)
T ss_pred cCc-----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 221 2278888999999999999999999999999887 8999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHH
Q 010276 276 RSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYI 354 (514)
Q Consensus 276 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~ 354 (514)
.+.+|...+-.-.+.++++-.++-.+-.-+.+.+..++.-.|+....+|+.|.. ++.++|+.+|+++++++|....+|.
T Consensus 289 ~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWT 368 (559)
T KOG1155|consen 289 RKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWT 368 (559)
T ss_pred HhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHH
Confidence 999999998889999999988888887778888889999999999999999988 9999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCC
Q 010276 355 MKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASG 433 (514)
Q Consensus 355 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 433 (514)
.+|.-|..+.+...|+..|++|++++|.+ .+|+.+|+.|.-++.+.=|+-+|+++....|+++..|..+|.||.+. ++
T Consensus 369 LmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl-~~ 447 (559)
T KOG1155|consen 369 LMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL-NR 447 (559)
T ss_pred HhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh-cc
Confidence 99999999999999999999999999998 99999999999999999999999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhC-------CCc-hHHHHHHHHHHHhccHHHHH
Q 010276 434 REKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW-------ADD-SLHVKLAQVFAATNMLQEAL 505 (514)
Q Consensus 434 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~~-~~~~~l~~~~~~~g~~~~A~ 505 (514)
.++|+++|.+++..+..+..++..||.+|.++++.++|..+|++.++.. |.- .+...|+..+.+.+++++|.
T Consensus 448 ~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 448 LEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 9999999999999998888999999999999999999999999999844 222 47777999999999999999
Q ss_pred HHHHHHh
Q 010276 506 SHYEAAL 512 (514)
Q Consensus 506 ~~~~~al 512 (514)
.+..+++
T Consensus 528 ~Ya~~~~ 534 (559)
T KOG1155|consen 528 YYATLVL 534 (559)
T ss_pred HHHHHHh
Confidence 8877665
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=6.4e-33 Score=276.52 Aligned_cols=422 Identities=11% Similarity=-0.057 Sum_probs=330.2
Q ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcC
Q 010276 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALG 122 (514)
Q Consensus 43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 122 (514)
...++..|..+...|++++|+..|+++++.+| +++.+++.++.+|+..|
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP-------------------------------~n~~~~~~LA~~yl~~g 92 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVP-------------------------------DNIPLTLYLAEAYRHFG 92 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-------------------------------CCHHHHHHHHHHHHHCC
Confidence 44566777888888999999999999999988 44667788889999999
Q ss_pred CHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHh--------ccCcccHhH
Q 010276 123 ETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAEL--------GATPKDIIS 193 (514)
Q Consensus 123 ~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~--------~~~~~~~~~ 193 (514)
++++|+..+++. ...|.+...+..++.+ +++++|+..|+++++.+|++.++...++.. +...++...
T Consensus 93 ~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~ 168 (987)
T PRK09782 93 HDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARA 168 (987)
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHH
Confidence 999999999994 4558888888777666 889999999999999999999999888887 666666666
Q ss_pred HHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hCChHHHHHHH
Q 010276 194 LFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAI-IGKNDEAILNF 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~ 272 (514)
+++ .... ...+......+.+..+|...|++++|+..+.++.+..|.+......++.+|.. +++ +++..++
T Consensus 169 AL~--lr~~------~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~ 239 (987)
T PRK09782 169 QLN--DATF------AASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQ 239 (987)
T ss_pred HHH--Hhhh------CCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHh
Confidence 665 2221 12233444555668899999999999999999998888887777777766666 344 5555554
Q ss_pred HHHHhhCCCCHHHHHHHHHH------------------------------------------------------------
Q 010276 273 EKVRSIDPYIMTYMDEYAML------------------------------------------------------------ 292 (514)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~~------------------------------------------------------------ 292 (514)
+..++ .++.++..++..
T Consensus 240 ~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~ 316 (987)
T PRK09782 240 SQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVV 316 (987)
T ss_pred chhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHH
Confidence 33221 222222222222
Q ss_pred ---------------------------------------------------------------------HHHhCChhHHH
Q 010276 293 ---------------------------------------------------------------------LKVKCDYSKLS 303 (514)
Q Consensus 293 ---------------------------------------------------------------------~~~~~~~~~A~ 303 (514)
....|+.++|.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~ 396 (987)
T PRK09782 317 GATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAA 396 (987)
T ss_pred HHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHH
Confidence 22334444444
Q ss_pred HHHHHHhh-----------------------------------------------------------------cCCC--C
Q 010276 304 KLVHDLLS-----------------------------------------------------------------IDPS--R 316 (514)
Q Consensus 304 ~~~~~~~~-----------------------------------------------------------------~~~~--~ 316 (514)
..++++.. ..|. +
T Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~ 476 (987)
T PRK09782 397 DLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYD 476 (987)
T ss_pred HHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCC
Confidence 43333322 1122 4
Q ss_pred hHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhc
Q 010276 317 PEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQF 396 (514)
Q Consensus 317 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 396 (514)
+.+++.+|.++..+++.+|+..+.+++...|++. ....+|.++...|++++|+..|+++....|....+..+|.++...
T Consensus 477 ~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~ 555 (987)
T PRK09782 477 AAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAA 555 (987)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHC
Confidence 4556667777766777788888888888888743 355667777899999999999999887777777788999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHH
Q 010276 397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLE 476 (514)
Q Consensus 397 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 476 (514)
|++++|..+++++++..|++......++...... |++++|+..|+++++.+|+ +.++..+|.++.+.|++++|+..++
T Consensus 556 Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~-Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~ 633 (987)
T PRK09782 556 GNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP-GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLR 633 (987)
T ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999988888888888787 9999999999999999997 8999999999999999999999999
Q ss_pred HHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhcC
Q 010276 477 RYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALRL 514 (514)
Q Consensus 477 ~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~l 514 (514)
+++...|++. ++..+|.++...|++++|+..|++++++
T Consensus 634 ~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 634 AALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999985 9999999999999999999999999863
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=8.9e-34 Score=277.13 Aligned_cols=334 Identities=13% Similarity=0.008 Sum_probs=307.8
Q ss_pred ccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhH
Q 010276 139 RNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHR 218 (514)
Q Consensus 139 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (514)
.+.......+..+...|++++|...++.++...|.+..++..+
T Consensus 40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l------------------------------------- 82 (656)
T PRK15174 40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRW------------------------------------- 82 (656)
T ss_pred ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHH-------------------------------------
Confidence 3444556677888899999999999999999999999988766
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 010276 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (514)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (514)
+.+....|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..++.++...|+
T Consensus 83 ---~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~ 159 (656)
T PRK15174 83 ---VISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDK 159 (656)
T ss_pred ---hhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 66677789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccC-chhHHHHHHHHHhcCChHHHHHHHHHhH
Q 010276 299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERH-IPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377 (514)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 377 (514)
+++|+..+++++...|+++..+..++..+..|++++|+..+++++...|.. ......++.++...|++++|+..+++++
T Consensus 160 ~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al 239 (656)
T PRK15174 160 ELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESAL 239 (656)
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999999998877765555599999999999999987643 3445567889999999999999999999
Q ss_pred hhcCCh-HHHHHHHHHHHhcCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCh
Q 010276 378 ELRPDL-RSYQGLVHSYLQFSKVKE----ALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL 452 (514)
Q Consensus 378 ~~~~~~-~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 452 (514)
...|++ .++..+|.++...|++++ |+..+++++..+|+++.++..+|.++... |++++|+..++++++.+|+++
T Consensus 240 ~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~-g~~~eA~~~l~~al~l~P~~~ 318 (656)
T PRK15174 240 ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRT-GQNEKAIPLLQQSLATHPDLP 318 (656)
T ss_pred hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCH
Confidence 999998 789999999999999986 89999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 453 GAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
.++..+|.++...|++++|+..|++++...|+.. .+..+|.++...|++++|+..|+++++
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875 566679999999999999999999875
No 16
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-34 Score=245.32 Aligned_cols=408 Identities=17% Similarity=0.142 Sum_probs=294.7
Q ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcC
Q 010276 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALG 122 (514)
Q Consensus 43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 122 (514)
+..+...|+-+|+.|+|++||++|.+||+.+|+.|.++..++.||. ..|
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~-------------------------------~lg 163 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYE-------------------------------SLG 163 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHH-------------------------------HHh
Confidence 5678889999999999999999999999999977766555555554 566
Q ss_pred CHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCHHHHHHHHHhccCcc-----------
Q 010276 123 ETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCP-FFIEAITALAELGATPK----------- 189 (514)
Q Consensus 123 ~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~----------- 189 (514)
++++.++.+.+. ...|....+++.++..+...|++++|+....-.--... .+......+-+.....+
T Consensus 164 d~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~n 243 (606)
T KOG0547|consen 164 DWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKEN 243 (606)
T ss_pred hHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhccc
Confidence 666666655552 33356666666666666666666666544332211110 00000000000000000
Q ss_pred ---------cHhHHHhccCCcCCCCCCCcCC-chhHHhHHHHHHHHHHh---cCHHHHHHHHHHHHHhC----CCc----
Q 010276 190 ---------DIISLFAQTPNRSGRAPFDHLD-SSRWLHRYVEAQCCIAS---NDYKGGLELFAELLQRF----PNN---- 248 (514)
Q Consensus 190 ---------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~----p~~---- 248 (514)
-+...+......+........+ .+.... .+...+.. ..|..|...+.+..... ..+
T Consensus 244 r~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~---~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~ 320 (606)
T KOG0547|consen 244 RPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALA---EALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDA 320 (606)
T ss_pred CCCCCCcHHHHHHHHhhccccccccccCCCccchhhHH---HHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccch
Confidence 0011111111111111111111 111111 12222222 36777777766654321 112
Q ss_pred -----HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHH
Q 010276 249 -----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL 323 (514)
Q Consensus 249 -----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 323 (514)
..++...|..++-.|++-.|...|++++.++|.+...+..++.+|...++.++....|.++..++|.++++++..
T Consensus 321 ~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHR 400 (606)
T KOG0547|consen 321 ELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHR 400 (606)
T ss_pred hHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhH
Confidence 567778888888999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHH
Q 010276 324 SVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKE 401 (514)
Q Consensus 324 ~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 401 (514)
|.+... +++++|+.-|++++.++|++...+..++.+.+++++++++...|+.+.+..|+. +.+...|.++..++++++
T Consensus 401 gQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~ 480 (606)
T KOG0547|consen 401 GQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDK 480 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHH
Confidence 998877 999999999999999999999999999999999999999999999999999997 788888999999999999
Q ss_pred HHHHHHHHHhhCCC------CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHH
Q 010276 402 ALYAAREAMKAMPQ------SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLL 475 (514)
Q Consensus 402 A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 475 (514)
|++.|.+++.+.|. ++..+...|.+..+..+++..|+..+++|++++|....++..||.+..++|+.++|+++|
T Consensus 481 A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielF 560 (606)
T KOG0547|consen 481 AVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELF 560 (606)
T ss_pred HHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999988 677777777766665588999999999999999999899999999999999999999999
Q ss_pred HHHHhhCCC
Q 010276 476 ERYLKDWAD 484 (514)
Q Consensus 476 ~~~~~~~~~ 484 (514)
++++.+..+
T Consensus 561 Eksa~lArt 569 (606)
T KOG0547|consen 561 EKSAQLART 569 (606)
T ss_pred HHHHHHHHh
Confidence 998887654
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-33 Score=261.75 Aligned_cols=453 Identities=17% Similarity=0.186 Sum_probs=379.2
Q ss_pred hHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCC
Q 010276 18 DSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSP 97 (514)
Q Consensus 18 ~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~ 97 (514)
+.|.....+++.. .+.++..++-.|.+.+..|+|..|+.+|++++..+|..
T Consensus 147 ~~A~a~F~~Vl~~--------sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~--------------------- 197 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQ--------SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPAC--------------------- 197 (1018)
T ss_pred HHHHHHHHHHHhh--------CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCccc---------------------
Confidence 4555544545442 23345578888889999999999999999999998853
Q ss_pred cccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhcCCC
Q 010276 98 NSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRH---NRGAVACYKECLRHCPF 173 (514)
Q Consensus 98 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~p~ 173 (514)
.++++..+|.|+.++|+.+.|+..++++ ...|.+..++..||.+-....+ +..++..+.++...+|.
T Consensus 198 ---------~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~ 268 (1018)
T KOG2002|consen 198 ---------KADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE 268 (1018)
T ss_pred ---------CCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC
Confidence 3667788899999999999999999984 4558899999999988777654 67899999999999999
Q ss_pred CHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHH
Q 010276 174 FIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN-IHIL 252 (514)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~ 252 (514)
++.+...|+..+...++...+...+........ ..+......|..|+++..+|+|++|..+|.++++.+|++ .-.+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~---~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTE---NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 999999999999999988777666655543332 122333456888999999999999999999999999988 7788
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC----ChhHHHHHHHHHhhcCCCChHHHHHHHHHHh
Q 010276 253 LEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC----DYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (514)
Q Consensus 253 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (514)
+.+|+.+...|+++.|+.+|+++++..|++.+....+|.+|...+ ..+.|..++.+++...|.+.++|..++.++.
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999886 6688999999999999999999999999999
Q ss_pred hcChhHHHHHHHHHHHh-----cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh-----cCCh------HHHHHHHHH
Q 010276 329 RKDERGALSYAEKSIRI-----DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-----RPDL------RSYQGLVHS 392 (514)
Q Consensus 329 ~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~------~~~~~l~~~ 392 (514)
.++...++..|.+++.+ .+-.++.++++|..++..|++++|...|.++... +++. ..-++++.+
T Consensus 426 ~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 426 QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 99988889999998853 2334678899999999999999999999999876 1221 247899999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH--------
Q 010276 393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI-------- 464 (514)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-------- 464 (514)
+...++++.|.+.|..+++.+|...+.+..+|.+.... +...+|...+..++..+..+|.++..+|.++..
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k-~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDK-NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhc-cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc
Confidence 99999999999999999999999999999999666666 999999999999999998888888777766622
Q ss_pred ----------------------------------------cCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHH
Q 010276 465 ----------------------------------------EGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQE 503 (514)
Q Consensus 465 ----------------------------------------~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 503 (514)
.+.+++|+..|.++++.+|.+- +-..+|.++...|++.+
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchH
Confidence 3345677777777777777774 66677778888888888
Q ss_pred HHHHHHHHh
Q 010276 504 ALSHYEAAL 512 (514)
Q Consensus 504 A~~~~~~al 512 (514)
|..+|.++.
T Consensus 665 A~dIFsqVr 673 (1018)
T KOG2002|consen 665 ARDIFSQVR 673 (1018)
T ss_pred HHHHHHHHH
Confidence 888877764
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=4.6e-32 Score=270.95 Aligned_cols=392 Identities=13% Similarity=0.041 Sum_probs=272.5
Q ss_pred HHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHH
Q 010276 48 ILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAA 127 (514)
Q Consensus 48 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 127 (514)
-...+..-.|++++|++.|.++...+| .+..++..+|.++...|++++|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~~-------------------------------~~a~~~~~lA~~~~~~g~~~~A 68 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHMQ-------------------------------LPARGYAAVAVAYRNLKQWQNS 68 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC-------------------------------CCHHHHHHHHHHHHHcCCHHHH
Confidence 344566678999999999988887655 4455567777777788888888
Q ss_pred HHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCC
Q 010276 128 IVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAP 206 (514)
Q Consensus 128 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (514)
+..++++ ...|.++.++..++.++...|++++|+..++++++..|++.. +..+
T Consensus 69 ~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~l------------------------- 122 (765)
T PRK10049 69 LTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLAL------------------------- 122 (765)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHH-------------------------
Confidence 8888774 334777777778888888888888888888888888887777 5544
Q ss_pred CCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH--
Q 010276 207 FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT-- 284 (514)
Q Consensus 207 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-- 284 (514)
|.++...|++++|+..++++++..|+++.++..++.++...+..++|+..++++.. .|....
T Consensus 123 ---------------a~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l 186 (765)
T PRK10049 123 ---------------AYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDL 186 (765)
T ss_pred ---------------HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHH
Confidence 66677778888888888888888888877777778777777777778777776665 443211
Q ss_pred ---HHHHHHHHHH-----HhCCh---hHHHHHHHHHhhcCCCChHHHH--------HHHHHHhhcChhHHHHHHHHHHHh
Q 010276 285 ---YMDEYAMLLK-----VKCDY---SKLSKLVHDLLSIDPSRPEVFV--------ALSVLWERKDERGALSYAEKSIRI 345 (514)
Q Consensus 285 ---~~~~l~~~~~-----~~~~~---~~A~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~A~~~~~~~~~~ 345 (514)
.......+.. ..+++ ++|+..++.+++..|.+|.... .++.++..|++++|+..|+++++.
T Consensus 187 ~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~ 266 (765)
T PRK10049 187 EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE 266 (765)
T ss_pred HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 1111122221 12233 6677777777755444332211 134444447777888888887776
Q ss_pred cccCch-hHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----
Q 010276 346 DERHIP-GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ---- 415 (514)
Q Consensus 346 ~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---- 415 (514)
.|..|. +...+|.++...|++++|+..|++++...|.. .....++.++...|++++|+..++++....|.
T Consensus 267 ~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~ 346 (765)
T PRK10049 267 GQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRL 346 (765)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEee
Confidence 543222 33335777777888888888888777766543 24556666777778888888888777776652
Q ss_pred -----------CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276 416 -----------SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD 484 (514)
Q Consensus 416 -----------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 484 (514)
...++..++.++... |++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|+
T Consensus 347 ~~~~~~~p~~~~~~a~~~~a~~l~~~-g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 347 YGSPTSIPNDDWLQGQSLLSQVAKYS-NDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 134566777777777 88888888888888888888778888888888888888888888888888777
Q ss_pred ch-HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 485 DS-LHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 485 ~~-~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
+. +++.+|.++...|++++|...++++++
T Consensus 426 ~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 426 NINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 64 777777777788888888877777664
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=2.4e-31 Score=265.80 Aligned_cols=409 Identities=12% Similarity=0.030 Sum_probs=321.9
Q ss_pred HHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhh
Q 010276 5 KEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSS 84 (514)
Q Consensus 5 ~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 84 (514)
-+.+....-.|+++.|+.+...+... .+..+.++..+|..+...|++++|+..|+++++.+|
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~--------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P---------- 80 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVH--------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP---------- 80 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------
Confidence 34566777888899988766655431 233455799999999999999999999999999987
Q ss_pred hhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHH
Q 010276 85 RSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVAC 163 (514)
Q Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 163 (514)
.++.++..++.++...|++++|+..++++ ...|.++. +..+|.++...|++++|+..
T Consensus 81 ---------------------~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~ 138 (765)
T PRK10049 81 ---------------------QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRA 138 (765)
T ss_pred ---------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHH
Confidence 44566778888999999999999999995 44588888 99999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 010276 164 YKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQ 243 (514)
Q Consensus 164 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 243 (514)
++++++..|++..++..+ +.++...|..+.|+..++++..
T Consensus 139 l~~al~~~P~~~~~~~~l----------------------------------------a~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 139 MTQALPRAPQTQQYPTEY----------------------------------------VQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHhCCCCHHHHHHH----------------------------------------HHHHHHCCChHHHHHHHHhCCC
Confidence 999999999999988766 5566666778888887776654
Q ss_pred hCCCcH-----HHHHHHHHHHH-----HhCCh---HHHHHHHHHHHhhCCCCHHH-------HHHHHHHHHHhCChhHHH
Q 010276 244 RFPNNI-----HILLEMAKVDA-----IIGKN---DEAILNFEKVRSIDPYIMTY-------MDEYAMLLKVKCDYSKLS 303 (514)
Q Consensus 244 ~~p~~~-----~~~~~la~~~~-----~~~~~---~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~ 303 (514)
.|+.. .....+..+.. ..+++ ++|+..++.+++..|.++.. .......+...|++++|+
T Consensus 179 -~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~ 257 (765)
T PRK10049 179 -TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVI 257 (765)
T ss_pred -CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44320 11112222222 22334 77888888888664433322 222122345778899999
Q ss_pred HHHHHHhhcCCCChH-HHHHHHHHHhh-cChhHHHHHHHHHHHhcccC----chhHHHHHHHHHhcCChHHHHHHHHHhH
Q 010276 304 KLVHDLLSIDPSRPE-VFVALSVLWER-KDERGALSYAEKSIRIDERH----IPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377 (514)
Q Consensus 304 ~~~~~~~~~~~~~~~-~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 377 (514)
..|++++...|..|. +...++.++.. |++++|+..|++++..+|.+ ......++.++...|++++|+..++++.
T Consensus 258 ~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~ 337 (765)
T PRK10049 258 SEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTI 337 (765)
T ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 999998887654332 33335666666 88999999999988877765 2345667777888999999999999888
Q ss_pred hhcC-------------Ch---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 010276 378 ELRP-------------DL---RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFY 441 (514)
Q Consensus 378 ~~~~-------------~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~ 441 (514)
...| ++ .++..++.++...|++++|+..+++++...|+++.++..+|.++... |++++|+..+
T Consensus 338 ~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~-g~~~~A~~~l 416 (765)
T PRK10049 338 NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR-GWPRAAENEL 416 (765)
T ss_pred hcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence 8766 21 35678899999999999999999999999999999999999999998 9999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHH
Q 010276 442 ESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVF 495 (514)
Q Consensus 442 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 495 (514)
++++.++|+++.+++.+|.++...|++++|...++++++..|++.....+...+
T Consensus 417 ~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 417 KKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997666666555
No 20
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-31 Score=231.02 Aligned_cols=230 Identities=18% Similarity=0.221 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHH
Q 010276 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLL 361 (514)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (514)
..++...|..++-.|+.-.|...++.++.++|..+..+..++.+|.. .+..+....|.++..++|.++++|+.+|.+++
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF 405 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence 56777888888999999999999999999999999999999999988 88889999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHH
Q 010276 362 SMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKF 440 (514)
Q Consensus 362 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~ 440 (514)
-++++++|+..|++++.++|++ -++..++.+.+++++++++...|+.+.+.+|+.++++...|.++..+ +++++|++.
T Consensus 406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDq-qqFd~A~k~ 484 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQ-QQFDKAVKQ 484 (606)
T ss_pred HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhH-HhHHHHHHH
Confidence 9999999999999999999999 88999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHhhCCC------ChHHHHHHHHHH-HHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHh
Q 010276 441 YESALRLEPG------YLGAALALAELH-VIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAAL 512 (514)
Q Consensus 441 ~~~a~~~~~~------~~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al 512 (514)
|.+++.+.|. ++..+..-|.+. ...+++..|+.+++++++++|.++ ++..||.+..++|+.++|+++|++++
T Consensus 485 YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 485 YDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999998 555444444332 234899999999999999999987 99999999999999999999999987
Q ss_pred c
Q 010276 513 R 513 (514)
Q Consensus 513 ~ 513 (514)
.
T Consensus 565 ~ 565 (606)
T KOG0547|consen 565 Q 565 (606)
T ss_pred H
Confidence 5
No 21
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-30 Score=226.45 Aligned_cols=461 Identities=19% Similarity=0.195 Sum_probs=294.5
Q ss_pred hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhh
Q 010276 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (514)
Q Consensus 4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (514)
....++..+.+.+|..|..+++.+..+. .++...+.+|++++-.|+|.+|....+.- .+.
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~---------~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le---------- 78 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLT---------NDPADIYWLAQVLYLGRQYERAAHLITTY-KLE---------- 78 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhcc---------CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhh----------
Confidence 4456677889999999999999997744 33446799999999999999998887764 221
Q ss_pred hhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcC-------CCCCc-----------------
Q 010276 84 SRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI-------PSKAR----------------- 139 (514)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-------~~~~~----------------- 139 (514)
..+...++..+.|+.+..++++|+.++... ...+.
T Consensus 79 ---------------------~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~ 137 (611)
T KOG1173|consen 79 ---------------------KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMI 137 (611)
T ss_pred ---------------------hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccc
Confidence 145667788889999999999999888721 00011
Q ss_pred --cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcc-cHhHHHhccCCcCCCCCCCcCCchhHH
Q 010276 140 --NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPK-DIISLFAQTPNRSGRAPFDHLDSSRWL 216 (514)
Q Consensus 140 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (514)
.....+..|.+|....+.++|...|.+++..++.+.++...+.....-.. +....+....-.. . ...+.....
T Consensus 138 ~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~--~--~~ed~e~l~ 213 (611)
T KOG1173|consen 138 NLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAM--L--TKEDVERLE 213 (611)
T ss_pred cchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHh--h--hhhHHHHHH
Confidence 12334778999999999999999999999999999999877754332211 1111111100000 0 000000000
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 010276 217 HRYVEAQCCIASNDYKGGLELFA-ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV 295 (514)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~-~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (514)
.++..-.+ ...-+.+...-. ..+..-.+++++....+..++..+++.+..+.++..++.+|-+...+.....++..
T Consensus 214 ~lyel~~~---k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~e 290 (611)
T KOG1173|consen 214 ILYELKLC---KNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYE 290 (611)
T ss_pred HHHHhhhh---hhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHH
Confidence 00000000 000000000000 11111123456666666777777777777777777777777666655554446666
Q ss_pred hCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHH
Q 010276 296 KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFR 374 (514)
Q Consensus 296 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 374 (514)
.|+..+-..+-.++++..|+.+..|+..|..|.. |++.+|.++|.++..++|....+|...|..+...|..++|+.+|.
T Consensus 291 l~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~ 370 (611)
T KOG1173|consen 291 LGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYF 370 (611)
T ss_pred hcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHH
Confidence 7776666666666777777777777777766666 777777777777777777777777777777777777777777777
Q ss_pred HhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh----CC
Q 010276 375 GAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL----EP 449 (514)
Q Consensus 375 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~----~~ 449 (514)
.|-++.|.. .....+|.-|...++++-|..+|.+++.+.|.+|-++..+|.+.... +.+.+|..+|+.++.. .+
T Consensus 371 tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~-~~y~~A~~~f~~~l~~ik~~~~ 449 (611)
T KOG1173|consen 371 TAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTY-EEYPEALKYFQKALEVIKSVLN 449 (611)
T ss_pred HHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehH-hhhHHHHHHHHHHHHHhhhccc
Confidence 777766665 55666677777777777777777777777777777777777776666 6777777777776632 11
Q ss_pred ---CChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 450 ---GYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 450 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
.....+.+||.++.+.+.+++|+..+++++.+.|.+. ++..+|.+|..+|+++.|+++|.++|-
T Consensus 450 e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 450 EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 1233566677777777777777777777777776653 666777777777777777777777664
No 22
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=9.4e-32 Score=242.04 Aligned_cols=295 Identities=25% Similarity=0.337 Sum_probs=279.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 010276 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (514)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (514)
+..+......-+..+|+..|.+.-...++...++..+|..|+.+++|++|..+|+.+-+..|...+..-.+..+++...+
T Consensus 323 ~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~ 402 (638)
T KOG1126|consen 323 LGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD 402 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh
Confidence 33445555667889999999997778888889999999999999999999999999999999999999999999999998
Q ss_pred hhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhH
Q 010276 299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377 (514)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 377 (514)
.-+--.+.+.++..+|+.|+.|..+|+++.. ++++.|+++|+++++++|....+|..+|.-+.....++.|..+|+.++
T Consensus 403 ~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 403 EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 8888888899999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred hhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHH
Q 010276 378 ELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAAL 456 (514)
Q Consensus 378 ~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 456 (514)
..+|.+ .+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+. |+.++|+..|++|+.++|.++-..+
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~-k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQL-KRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHh-hhhhHHHHHHHHHHhcCCCCchhHH
Confidence 999998 99999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhcC
Q 010276 457 ALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALRL 514 (514)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~l 514 (514)
..|.++...+++++|+..+++..+..|+.. +++.+|.+|.++|+.+.|+..|--|+++
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 999999999999999999999999999985 9999999999999999999999877654
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.97 E-value=1.7e-26 Score=226.19 Aligned_cols=436 Identities=13% Similarity=-0.012 Sum_probs=336.9
Q ss_pred hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHH
Q 010276 39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCH 118 (514)
Q Consensus 39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 118 (514)
.+..+...+..+.+.+++|++..|+..|+++++.+|.++. .+. .++.++
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~------------------------------av~-dll~l~ 78 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG------------------------------QVD-DWLQIA 78 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh------------------------------hHH-HHHHHH
Confidence 3446778899999999999999999999999999886531 122 566777
Q ss_pred HhcCCHHHHHHHHhcCCC-CCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhc
Q 010276 119 FALGETKAAIVEMEGIPS-KARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQ 197 (514)
Q Consensus 119 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 197 (514)
...|+.++|+..+++... .+........+|.++...|++++|++.|+++++.+|+++.++..++..+...++..++++.
T Consensus 79 ~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~ 158 (822)
T PRK14574 79 GWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQ 158 (822)
T ss_pred HHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 778999999999999542 2555666666688999999999999999999999999999999888888888888888888
Q ss_pred cCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 010276 198 TPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRS 277 (514)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 277 (514)
+.......+. .... ..++.++...++..+|+..++++++.+|++.+++..+..++...|-...|.+...+--.
T Consensus 159 l~~l~~~dp~------~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~ 231 (822)
T PRK14574 159 ATELAERDPT------VQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPN 231 (822)
T ss_pred HHHhcccCcc------hHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc
Confidence 8777655442 1111 33355555567777799999999999999999999999999999999999877776433
Q ss_pred hCCCCHHHHHHHH--HHHHH---------hCC---hhHHHHHHHHHhhcCCCChH---HHH-----HHHHHHhhcChhHH
Q 010276 278 IDPYIMTYMDEYA--MLLKV---------KCD---YSKLSKLVHDLLSIDPSRPE---VFV-----ALSVLWERKDERGA 335 (514)
Q Consensus 278 ~~~~~~~~~~~l~--~~~~~---------~~~---~~~A~~~~~~~~~~~~~~~~---~~~-----~l~~~~~~~~~~~A 335 (514)
........+.... .-..+ .++ .+.|+..++.++...|..|. .+. .++.+...+++.++
T Consensus 232 ~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~v 311 (822)
T PRK14574 232 LVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADL 311 (822)
T ss_pred ccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 3222211121111 11111 112 35577777777775444442 221 22333333999999
Q ss_pred HHHHHHHHHhc-ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCC------h-HHHHHHHHHHHhcCCHHHHHHHHH
Q 010276 336 LSYAEKSIRID-ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD------L-RSYQGLVHSYLQFSKVKEALYAAR 407 (514)
Q Consensus 336 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~-~~~~~l~~~~~~~~~~~~A~~~~~ 407 (514)
++.|+...... |-.+.+....|..|...+++++|+.+|++++...|. . .....|..++...+++++|..+++
T Consensus 312 i~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~ 391 (822)
T PRK14574 312 IKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAV 391 (822)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99999887654 223456777999999999999999999999876532 1 335778899999999999999999
Q ss_pred HHHhhCC---------------CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHH
Q 010276 408 EAMKAMP---------------QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAV 472 (514)
Q Consensus 408 ~~~~~~p---------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 472 (514)
+..+..| +.......++.++... |+..+|++.+++.+...|.++.++..+|.++...|.+.+|.
T Consensus 392 ~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~-gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~ 470 (822)
T PRK14574 392 NYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL-NDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAE 470 (822)
T ss_pred HHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 9987444 2356777888888888 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 473 SLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 473 ~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
..++.+..+.|++. +...+|.++..+|++.+|....+.+++
T Consensus 471 ~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 471 QELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999999999985 888999999999999999888876654
No 24
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.9e-27 Score=201.35 Aligned_cols=368 Identities=17% Similarity=0.167 Sum_probs=247.2
Q ss_pred hhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHh
Q 010276 41 LKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120 (514)
Q Consensus 41 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 120 (514)
.+.-.+++.|.++-+.|....|+..|..++...|-...+|..+..+.-
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit-------------------------------- 209 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT-------------------------------- 209 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc--------------------------------
Confidence 335578889999999999999999999999888866655554443321
Q ss_pred cCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhc-CCCCHHHHHHHHHhccCcccHhHHHhccC
Q 010276 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRH-CPFFIEAITALAELGATPKDIISLFAQTP 199 (514)
Q Consensus 121 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 199 (514)
+.+.+......++. ..+.-.-+.++.++....+.++++.-++..... .|.+.......
T Consensus 210 --~~e~~~~l~~~l~~-~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~------------------ 268 (559)
T KOG1155|consen 210 --DIEILSILVVGLPS-DMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQI------------------ 268 (559)
T ss_pred --hHHHHHHHHhcCcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHH------------------
Confidence 01111111111111 123333355566666666666666666666655 45444433322
Q ss_pred CcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC
Q 010276 200 NRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID 279 (514)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 279 (514)
|.+.....++++|+..|+.+.+.+|-..+-.-....+++-.++-.+-.-.-+.+..++
T Consensus 269 ----------------------A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~id 326 (559)
T KOG1155|consen 269 ----------------------AAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNID 326 (559)
T ss_pred ----------------------HHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5666666777777777777777777666555566666666655555445555666666
Q ss_pred CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHH
Q 010276 280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGN 358 (514)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 358 (514)
.-.++....+|+.|...++.++|+.+|+++++++|....+|..+|.-|.. ++...|+..|+++++++|.+-.+|+.+|.
T Consensus 327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQ 406 (559)
T ss_pred cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhH
Confidence 66677777777777777777777777777777777777777777776666 67777777777777777777777777777
Q ss_pred HHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHH
Q 010276 359 LLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKA 437 (514)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A 437 (514)
.|.-++-+.=|+-+|+++....|.+ ..|..+|.+|.+.++.++|+++|.+++.....+..++..+|.+|.+. ++.++|
T Consensus 407 aYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l-~d~~eA 485 (559)
T KOG1155|consen 407 AYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL-KDLNEA 485 (559)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH-HhHHHH
Confidence 7777777777777777777777776 67777777777777777777777777777766777777777777777 777777
Q ss_pred HHHHHHHHh-------hCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276 438 KKFYESALR-------LEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD 484 (514)
Q Consensus 438 ~~~~~~a~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 484 (514)
..+|++.++ .+|+...+..-|+.-+.+.+++++|..+...++.-.+.
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 777777776 34444556666777777777777777777776665443
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.97 E-value=4.7e-27 Score=220.21 Aligned_cols=295 Identities=18% Similarity=0.147 Sum_probs=262.5
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC----HHHHHHHHHH
Q 010276 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI----MTYMDEYAML 292 (514)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~ 292 (514)
..+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. ...+..+|.+
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 346678999999999999999999999999999999999999999999999999999998854332 3568899999
Q ss_pred HHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCch-----hHHHHHHHHHhcCCh
Q 010276 293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIP-----GYIMKGNLLLSMKRP 366 (514)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 366 (514)
+...|++++|...|+++++..|.+..++..++.++.. |++++|+..++++++..|.+.. .+..+|.++...|++
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999998887 9999999999999998876543 456789999999999
Q ss_pred HHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 010276 367 EAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS-AKALKLVGDVHASNASGREKAKKFYESA 444 (514)
Q Consensus 367 ~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~a 444 (514)
++|+..|+++++..|+. .++..+|.++...|++++|+..+++++..+|.+ ...+..++.++... |++++|+..++++
T Consensus 197 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~-g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL-GDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 99999999999999987 789999999999999999999999999998876 46678899999998 9999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHH---hccHHHHHHHHHHHhc
Q 010276 445 LRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAA---TNMLQEALSHYEAALR 513 (514)
Q Consensus 445 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~ 513 (514)
++..|+... ...++.++.+.|++++|+..++++++..|++..+..+...+.. .|+..+|+..+++.++
T Consensus 276 ~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 276 LEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 999998754 4889999999999999999999999999998755555444443 5688999998887663
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1.6e-28 Score=221.27 Aligned_cols=263 Identities=14% Similarity=0.072 Sum_probs=217.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhH
Q 010276 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (514)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (514)
|..|+..++|++|..+|+.+-+..|-..+-.-....+++.+.+.-+---..+..++.+|..|+.|..+|.++..+++++.
T Consensus 360 GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~ 439 (638)
T KOG1126|consen 360 GRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDT 439 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHH
Confidence 77888888888888888888888776666555666666666665555555666777788888888888888888888888
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhc
Q 010276 302 LSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR 380 (514)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 380 (514)
|+++|+++++++|....++..+|.-+.. .+++.|..+|++++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++
T Consensus 440 Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN 519 (638)
T KOG1126|consen 440 AIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN 519 (638)
T ss_pred HHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC
Confidence 8888888888888888888888876655 788888888888888888888888888888888888888888888888888
Q ss_pred CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHH
Q 010276 381 PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALA 459 (514)
Q Consensus 381 ~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 459 (514)
|.+ .....+|.++.+.|+.++|+.++++|+.++|.++-..+..|.++... +++++|+..+++.-++.|+...+++.+|
T Consensus 520 P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~-~~~~eal~~LEeLk~~vP~es~v~~llg 598 (638)
T KOG1126|consen 520 PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL-GRYVEALQELEELKELVPQESSVFALLG 598 (638)
T ss_pred ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh-cchHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 888 56778888888888888888888888888888888888888888888 8888888888888888888888888888
Q ss_pred HHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276 460 ELHVIEGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (514)
.+|.+.|+.+.|+..|.-+.+++|..
T Consensus 599 ki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 599 KIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHccchHHHHhhHHHhcCCCcc
Confidence 88888888888888888888888764
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.97 E-value=9.7e-27 Score=218.10 Aligned_cols=299 Identities=18% Similarity=0.207 Sum_probs=251.4
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHH
Q 010276 140 NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY 219 (514)
Q Consensus 140 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (514)
.....+..|..+...|++++|+..|+++++.+|++..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------------------- 75 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLAL-------------------------------------- 75 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHH--------------------------------------
Confidence 445567778888899999999999999999999887776555
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 010276 220 VEAQCCIASNDYKGGLELFAELLQRFPNN----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV 295 (514)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (514)
|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+..|+++++.+|.+..++..++.++..
T Consensus 76 --a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 153 (389)
T PRK11788 76 --GNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ 153 (389)
T ss_pred --HHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 778888899999999999888753322 35678889999999999999999999999888888899999999999
Q ss_pred hCChhHHHHHHHHHhhcCCCChH-----HHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHH
Q 010276 296 KCDYSKLSKLVHDLLSIDPSRPE-----VFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAA 369 (514)
Q Consensus 296 ~~~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 369 (514)
.|++++|++.+++++...|.+.. .+..+|.++.. |++++|+..++++++..|+...++..+|.++...|++++|
T Consensus 154 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 233 (389)
T PRK11788 154 EKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAA 233 (389)
T ss_pred hchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999888776532 34566766665 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 010276 370 VIAFRGAQELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL 447 (514)
Q Consensus 370 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~ 447 (514)
+..+++++...|.+ ..+..++.+|...|++++|...++++++..|+... ...++.++... |++++|+..++++++.
T Consensus 234 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~-g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 234 IEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQ-EGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHh-CCHHHHHHHHHHHHHh
Confidence 99999999988876 56788999999999999999999999999998654 48899999998 9999999999999999
Q ss_pred CCCChHHHHHHHHHHHH--cCChhHHHHHHHHHHh
Q 010276 448 EPGYLGAALALAELHVI--EGRNGDAVSLLERYLK 480 (514)
Q Consensus 448 ~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~ 480 (514)
.|++......++..+.. .|+.++|+..+++.++
T Consensus 312 ~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 312 HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 99887555444443322 4588898888887775
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4e-27 Score=202.57 Aligned_cols=427 Identities=15% Similarity=0.133 Sum_probs=316.0
Q ss_pred HHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHH
Q 010276 46 LIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETK 125 (514)
Q Consensus 46 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 125 (514)
-..+|++++++.+|.+|+++|+.++..-|....- -...+...+|..+.+.|+|+
T Consensus 240 kmnigni~~kkr~fskaikfyrmaldqvpsink~--------------------------~rikil~nigvtfiq~gqy~ 293 (840)
T KOG2003|consen 240 KMNIGNIHFKKREFSKAIKFYRMALDQVPSINKD--------------------------MRIKILNNIGVTFIQAGQYD 293 (840)
T ss_pred eeeecceeeehhhHHHHHHHHHHHHhhccccchh--------------------------hHHHHHhhcCeeEEecccch
Confidence 3678999999999999999999999988754321 11223334455555566666
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC--------------CCCHHHHHHHH-----Hhc-
Q 010276 126 AAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHC--------------PFFIEAITALA-----ELG- 185 (514)
Q Consensus 126 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------------p~~~~~~~~l~-----~~~- 185 (514)
+|+..++.+.....+..+-+.+..|++..|+-++-.+.|++++..- |++.-....+- ...
T Consensus 294 dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek 373 (840)
T KOG2003|consen 294 DAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEK 373 (840)
T ss_pred hhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHH
Confidence 6666555543333333344444555555566555555565555321 11111110000 000
Q ss_pred cCcccHhHHHhccCCcCCCCC-CCcCC---------------chhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-
Q 010276 186 ATPKDIISLFAQTPNRSGRAP-FDHLD---------------SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN- 248 (514)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~-~~~~~---------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~- 248 (514)
....+..+++..+.++...+. .+... +.....-..++..+++.|+++.|++++.-.-+.+...
T Consensus 374 ~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~ 453 (840)
T KOG2003|consen 374 ENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTA 453 (840)
T ss_pred hhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhh
Confidence 000111112111111111110 00000 1111112456778899999999999987765554433
Q ss_pred HHHHHHHHHHHHHh--CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHH
Q 010276 249 IHILLEMAKVDAII--GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVL 326 (514)
Q Consensus 249 ~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 326 (514)
..+-..+..+++.+ .++..|..+-..++.++..++.++.+.|.+.+..|++++|.+.|++++..+....++++++|..
T Consensus 454 saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt 533 (840)
T KOG2003|consen 454 SAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLT 533 (840)
T ss_pred HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhccc
Confidence 33445565566654 3788999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHH
Q 010276 327 WER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALY 404 (514)
Q Consensus 327 ~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~ 404 (514)
+.. |+.++|+++|-+.-.+--++.++++.++.+|..+.+..+|++++.++..+-|++ ..+..++.+|-+.|+-.+|..
T Consensus 534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq 613 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQ 613 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhh
Confidence 887 999999999999988888889999999999999999999999999999999998 678899999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276 405 AAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD 484 (514)
Q Consensus 405 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 484 (514)
++-......|-+.+..-.+|..|... .-+++|+.+|+++.-+.|+.......++.|+.+.|+|.+|.+.|+..-...|.
T Consensus 614 ~~ydsyryfp~nie~iewl~ayyidt-qf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 614 CHYDSYRYFPCNIETIEWLAAYYIDT-QFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred hhhhcccccCcchHHHHHHHHHHHhh-HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999998 88899999999999999998888888999999999999999999999999998
Q ss_pred c-hHHHHHHHHHHHhc
Q 010276 485 D-SLHVKLAQVFAATN 499 (514)
Q Consensus 485 ~-~~~~~l~~~~~~~g 499 (514)
+ +.+.-|..+.-.+|
T Consensus 693 dldclkflvri~~dlg 708 (840)
T KOG2003|consen 693 DLDCLKFLVRIAGDLG 708 (840)
T ss_pred chHHHHHHHHHhcccc
Confidence 7 35555666655555
No 29
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.8e-26 Score=201.86 Aligned_cols=408 Identities=15% Similarity=0.105 Sum_probs=283.9
Q ss_pred HHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCH
Q 010276 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET 124 (514)
Q Consensus 45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 124 (514)
-....|+..+..|+|+.|+.+|..++.++|.+.-.+ ....-+|..+|+|
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvly-------------------------------Snrsaa~a~~~~~ 52 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLY-------------------------------SNRSAAYASLGSY 52 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCccchh-------------------------------cchHHHHHHHhhH
Confidence 356789999999999999999999999998654333 3445667789999
Q ss_pred HHHHHHHhc-CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCC
Q 010276 125 KAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSG 203 (514)
Q Consensus 125 ~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 203 (514)
++|++.-.+ +...|.-+..|..+|..+.-.|+|++|+..|.+.++.+|++......+++.........+.+
T Consensus 53 ~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~-------- 124 (539)
T KOG0548|consen 53 EKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLF-------- 124 (539)
T ss_pred HHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhc--------
Confidence 999988877 55669999999999999999999999999999999999999999999988762211110000
Q ss_pred CCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----------------------------------
Q 010276 204 RAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN----------------------------------- 248 (514)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----------------------------------- 248 (514)
..|.-|...-... ..+.-..+.+.......+..+|.+
T Consensus 125 ------~~p~~~~~l~~~p--~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~ 196 (539)
T KOG0548|consen 125 ------TKPYFHEKLANLP--LTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILAS 196 (539)
T ss_pred ------cCcHHHHHhhcCh--hhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCC
Confidence 0111111000000 000000000000111111111111
Q ss_pred ---------------------------HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhH
Q 010276 249 ---------------------------IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (514)
Q Consensus 249 ---------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (514)
..-...+|...+...+++.|++.+..++.++ .+...+...+.++...|.+.+
T Consensus 197 ~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~ 275 (539)
T KOG0548|consen 197 MAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAE 275 (539)
T ss_pred CCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHH
Confidence 1133456777777777777777777777777 666777777777777777777
Q ss_pred HHHHHHHHhhcCCCChHHHHH-------HHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHH
Q 010276 302 LSKLVHDLLSIDPSRPEVFVA-------LSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF 373 (514)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~-------l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 373 (514)
.+.....+++.......-+.. +|..+.. ++++.++.+|.+++..... ..+.......++++...
T Consensus 276 c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~ 347 (539)
T KOG0548|consen 276 CIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEA 347 (539)
T ss_pred hhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHH
Confidence 777766666554433222222 2333333 6667777777776654433 44455555666666666
Q ss_pred HHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCh
Q 010276 374 RGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL 452 (514)
Q Consensus 374 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 452 (514)
+...-.+|.- ..-..-|..++..|+|..|+..|.+++..+|+++..+.++|.||..+ |.+..|+...+++++++|+..
T Consensus 348 e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL-~~~~~aL~Da~~~ieL~p~~~ 426 (539)
T KOG0548|consen 348 ERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKL-GEYPEALKDAKKCIELDPNFI 426 (539)
T ss_pred HHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCchHH
Confidence 6665666665 34456699999999999999999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHH
Q 010276 453 GAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYE 509 (514)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 509 (514)
.+|..-|.++..+.+|++|.+.|+++++.+|++. +.-.+..|...+.......+.++
T Consensus 427 kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 427 KAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 9999999999999999999999999999999874 77777777775433333333333
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.96 E-value=1.1e-25 Score=209.55 Aligned_cols=474 Identities=16% Similarity=0.090 Sum_probs=347.8
Q ss_pred hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCccc---ccccCChhHHHHHHH
Q 010276 39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSF---NVSAINENEVKYKIA 115 (514)
Q Consensus 39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~la 115 (514)
.+.....++..|+.++..|++++|...+.++++.+|.++.++..++.+|.+.|+.+++...+ ....|.+.+.|..++
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 34557788999999999999999999999999999999999999999999999999988776 346788889999999
Q ss_pred HHHHhcCCHHHHHHHHhc-CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-HHHHHHH----HHhccCcc
Q 010276 116 SCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFF-IEAITAL----AELGATPK 189 (514)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l----~~~~~~~~ 189 (514)
.....+|++++|.-++.+ +...|.+....+..+.+|.+.|+...|...|.+++..+|.. .+-...+ +......+
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999 45569999999999999999999999999999999999921 1111000 01110100
Q ss_pred ------------------------------------cHhHHHhccCCcCC----------------------------CC
Q 010276 190 ------------------------------------DIISLFAQTPNRSG----------------------------RA 205 (514)
Q Consensus 190 ------------------------------------~~~~~~~~~~~~~~----------------------------~~ 205 (514)
....+......... ..
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 00110000000000 00
Q ss_pred C------------------------------CCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHH
Q 010276 206 P------------------------------FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPN-NIHILLE 254 (514)
Q Consensus 206 ~------------------------------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~ 254 (514)
+ ........+..++..+..+...|++.+|+.++..+....+. +..+|+.
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 0 11113344555566789999999999999999999887664 3679999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC------------------
Q 010276 255 MAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR------------------ 316 (514)
Q Consensus 255 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------ 316 (514)
+|.||..+|.+++|++.|++++...|++.++...++.++..+|+.++|.+.+.....-++.+
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d 534 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD 534 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988866433221
Q ss_pred --------------------------------------------------------------------------------
Q 010276 317 -------------------------------------------------------------------------------- 316 (514)
Q Consensus 317 -------------------------------------------------------------------------------- 316 (514)
T Consensus 535 ~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~ 614 (895)
T KOG2076|consen 535 ILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRA 614 (895)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhh
Confidence
Q ss_pred -------hHHHHHH----HHHHhh-cChhHHHHHHHHHHHhccc--Cc----hhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 010276 317 -------PEVFVAL----SVLWER-KDERGALSYAEKSIRIDER--HI----PGYIMKGNLLLSMKRPEAAVIAFRGAQE 378 (514)
Q Consensus 317 -------~~~~~~l----~~~~~~-~~~~~A~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 378 (514)
.+-|+.+ ...+.. +.+.+|......++....- ++ ..-+....+.+..+++..|..+++.++.
T Consensus 615 ~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~ 694 (895)
T KOG2076|consen 615 VELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVIT 694 (895)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 0111111 111111 4444444444444432111 01 1123344455677888999888887776
Q ss_pred h-----cCCh-HHH-----------------------------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 010276 379 L-----RPDL-RSY-----------------------------------QGLVHSYLQFSKVKEALYAAREAMKAMPQSA 417 (514)
Q Consensus 379 ~-----~~~~-~~~-----------------------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 417 (514)
. +|.. ..| ...|......+.+..|+..|-++...+|++|
T Consensus 695 ~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~P 774 (895)
T KOG2076|consen 695 QFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSP 774 (895)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCc
Confidence 5 3322 111 1224445566788999999999999999999
Q ss_pred HHHHHHHHHHHhcC-C--------ChHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-
Q 010276 418 KALKLVGDVHASNA-S--------GREKAKKFYESALRLEPG--YLGAALALAELHVIEGRNGDAVSLLERYLKDWADD- 485 (514)
Q Consensus 418 ~~~~~l~~~~~~~~-~--------~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~- 485 (514)
-.-..+|..+..+. + ..-+++.++.+..++... ..++.+++|++|...|=..-|+.+|++++...|.+
T Consensus 775 l~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~ 854 (895)
T KOG2076|consen 775 LINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDV 854 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcccc
Confidence 88888887766431 1 124556666665555433 67899999999999999999999999999997643
Q ss_pred ------------hHHHHHHHHHHHhccHHHHHHHHHHHh
Q 010276 486 ------------SLHVKLAQVFAATNMLQEALSHYEAAL 512 (514)
Q Consensus 486 ------------~~~~~l~~~~~~~g~~~~A~~~~~~al 512 (514)
.+-+++..+|...|+...|.+++++-+
T Consensus 855 ~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 855 TDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKYL 893 (895)
T ss_pred ccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhhc
Confidence 588999999999999999999988755
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.96 E-value=1.7e-24 Score=194.21 Aligned_cols=444 Identities=15% Similarity=0.114 Sum_probs=353.2
Q ss_pred hHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCccc-ccc--cCChhHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 010276 58 EYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSF-NVS--AINENEVKYKIASCHFALGETKAAIVEMEGI 134 (514)
Q Consensus 58 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 134 (514)
+...=...+++|++..|++...|..-... ...+.|.-.+ ... -|.+.+.+ ..+.++.-|+.|...+.+.
T Consensus 361 ~~~~K~RVlRKALe~iP~sv~LWKaAVel----E~~~darilL~rAveccp~s~dLw----lAlarLetYenAkkvLNka 432 (913)
T KOG0495|consen 361 DTKNKKRVLRKALEHIPRSVRLWKAAVEL----EEPEDARILLERAVECCPQSMDLW----LALARLETYENAKKVLNKA 432 (913)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHhc----cChHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 34444567888888888887766542211 0011110000 000 01122222 3344556688888888887
Q ss_pred CCC-CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC-----CCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCC
Q 010276 135 PSK-ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHC-----PFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFD 208 (514)
Q Consensus 135 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (514)
... |.++..|..-+.+-...|+.+...+...+.+..- .-+.+.|..-+.-+...+.......-....++-....
T Consensus 433 Re~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEe 512 (913)
T KOG0495|consen 433 REIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEE 512 (913)
T ss_pred HhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcccc
Confidence 555 8889999999999999998888888887776321 1234455444443333333322211111111111111
Q ss_pred cCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHH
Q 010276 209 HLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288 (514)
Q Consensus 209 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 288 (514)
......| ..-+..+...+-++-|+.+|..+++.+|....+|...+..-...|..++-...+++++..-|.....|.+
T Consensus 513 ed~~~tw---~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM 589 (913)
T KOG0495|consen 513 EDRKSTW---LDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLM 589 (913)
T ss_pred chhHhHH---hhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHH
Confidence 1222333 4448889999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChH
Q 010276 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE 367 (514)
Q Consensus 289 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (514)
.+..++..|+...|..++.++++.+|++.++|.....+... .+++.|..+|.++....|. ..+|+.-+.+...+++.+
T Consensus 590 ~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 590 YAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHH
Confidence 99999999999999999999999999999999988887777 8899999999999988776 788999999999999999
Q ss_pred HHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 010276 368 AAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR 446 (514)
Q Consensus 368 ~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~ 446 (514)
+|+.+++++++..|++ ..|..+|+++.+.++.+.|...|...++..|..+..|..++.+-... |....|...++++.-
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~-~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD-GQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh-cchhhHHHHHHHHHh
Confidence 9999999999999998 88999999999999999999999999999999999999999999998 999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-------------------------------hHHHHHHHHH
Q 010276 447 LEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-------------------------------SLHVKLAQVF 495 (514)
Q Consensus 447 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------------------------------~~~~~l~~~~ 495 (514)
.+|.+...|....++..+.|+.++|...+.++++..|++ .++...|..+
T Consensus 748 kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lf 827 (913)
T KOG0495|consen 748 KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLF 827 (913)
T ss_pred cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHH
Confidence 999999999999999999999999999999999988764 3677789999
Q ss_pred HHhccHHHHHHHHHHHhcC
Q 010276 496 AATNMLQEALSHYEAALRL 514 (514)
Q Consensus 496 ~~~g~~~~A~~~~~~al~l 514 (514)
....++++|.++|.+++++
T Consensus 828 w~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999863
No 32
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.96 E-value=5.5e-25 Score=219.82 Aligned_cols=391 Identities=12% Similarity=0.014 Sum_probs=313.8
Q ss_pred ChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCHHHHHHHHHh
Q 010276 106 NENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCP-FFIEAITALAEL 184 (514)
Q Consensus 106 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~ 184 (514)
.+..++..+...|.+.|++++|..+|+.++. .+...|..+...|.+.|++++|+..|+++.+..+ .+...+..+...
T Consensus 156 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a 233 (697)
T PLN03081 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233 (697)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHH
Confidence 3466777888999999999999999999854 4677899999999999999999999999987643 233344444444
Q ss_pred ccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCC
Q 010276 185 GATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGK 264 (514)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~ 264 (514)
+...+................ ..+ +......+...|.+.|++++|..+|+++ .+.+...|..+...|.+.|+
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g----~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~ 305 (697)
T PLN03081 234 SAGLGSARAGQQLHCCVLKTG----VVG-DTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGY 305 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhC----CCc-cceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCC
Confidence 444443322211110000000 001 1222334578899999999999999986 34577899999999999999
Q ss_pred hHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcC-CCChHHHHHHHHHHhh-cChhHHHHHHHH
Q 010276 265 NDEAILNFEKVRSID-PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSID-PSRPEVFVALSVLWER-KDERGALSYAEK 341 (514)
Q Consensus 265 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~A~~~~~~ 341 (514)
+++|++.|++..+.. .-+...+..+...+.+.|++++|.+++..+++.. +.+..++..+...|.. |++++|...|++
T Consensus 306 ~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~ 385 (697)
T PLN03081 306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385 (697)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHh
Confidence 999999999987643 2245688889999999999999999999998875 5667778888888888 999999999998
Q ss_pred HHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh--cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCH
Q 010276 342 SIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMP--QSA 417 (514)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~~~ 417 (514)
+.+ .+...|..+...|.+.|+.++|++.|+++.+. .|+..++..+...+...|..++|..+|+.+.+..+ .+.
T Consensus 386 m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 386 MPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred CCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 754 35778999999999999999999999998875 57778899999999999999999999999986432 235
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-hHHHHHHHHHH
Q 010276 418 KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFA 496 (514)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~ 496 (514)
..+..+...+.+. |+.++|.+.+++. ...|+ ..+|..+...+...|+.+.|...+++.++..|++ ..|..++.+|.
T Consensus 463 ~~y~~li~~l~r~-G~~~eA~~~~~~~-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 463 MHYACMIELLGRE-GLLDEAYAMIRRA-PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN 539 (697)
T ss_pred cchHhHHHHHHhc-CCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence 6788899999998 9999999998864 33443 5689999999999999999999999999999986 48889999999
Q ss_pred HhccHHHHHHHHHHHh
Q 010276 497 ATNMLQEALSHYEAAL 512 (514)
Q Consensus 497 ~~g~~~~A~~~~~~al 512 (514)
+.|++++|.+.++...
T Consensus 540 ~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 540 SSGRQAEAAKVVETLK 555 (697)
T ss_pred hCCCHHHHHHHHHHHH
Confidence 9999999999998764
No 33
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.96 E-value=1.8e-25 Score=185.40 Aligned_cols=345 Identities=18% Similarity=0.193 Sum_probs=263.2
Q ss_pred CCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHH
Q 010276 36 ETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIA 115 (514)
Q Consensus 36 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la 115 (514)
+...+..++-++.+|..++..|++..|+..|-.|++.+| ++..+.++.|
T Consensus 31 ~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp-------------------------------~~Y~aifrRa 79 (504)
T KOG0624|consen 31 STASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDP-------------------------------NNYQAIFRRA 79 (504)
T ss_pred hcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-------------------------------hhHHHHHHHH
Confidence 345667889999999999999999999999999999988 5667888999
Q ss_pred HHHHhcCCHHHHHHHHhcCCC-CCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHH
Q 010276 116 SCHFALGETKAAIVEMEGIPS-KARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISL 194 (514)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~ 194 (514)
.+|+.+|+...|+..+.++.. .|+...+....|.+++++|++++|...|+.+++.+|.+.........+..
T Consensus 80 T~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~-------- 151 (504)
T KOG0624|consen 80 TVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLAL-------- 151 (504)
T ss_pred HHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHh--------
Confidence 999999999999999999644 48888899999999999999999999999999999965444332222110
Q ss_pred HhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHH
Q 010276 195 FAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEK 274 (514)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 274 (514)
......+......+...|++..|+.....+++..|-+...+...+.||...|++..|+..++.
T Consensus 152 -----------------~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ 214 (504)
T KOG0624|consen 152 -----------------IQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQ 214 (504)
T ss_pred -----------------HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 111122334466778889999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHH
Q 010276 275 VRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYI 354 (514)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 354 (514)
+-++..++.+.++.++.+++..|+.+.++...+.+++++|++...+-..-.+ .+..+.+..
T Consensus 215 askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl---kKv~K~les---------------- 275 (504)
T KOG0624|consen 215 ASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL---KKVVKSLES---------------- 275 (504)
T ss_pred HHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH---HHHHHHHHH----------------
Confidence 9999999999999999999999999999999999999999986543321111 111111111
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhhcCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 010276 355 MKGNLLLSMKRPEAAVIAFRGAQELRPDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS 429 (514)
Q Consensus 355 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 429 (514)
+.-....++|.++++..++.++.+|.. .....+..|+..-|++.+|+..+.+++..+|++..++...+..|..
T Consensus 276 --~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 276 --AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred --HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 122344566666666666666666652 2344455666666667777777777777777777777777776666
Q ss_pred cCCChHHHHHHHHHHHhhCCCChHHHHHH
Q 010276 430 NASGREKAKKFYESALRLEPGYLGAALAL 458 (514)
Q Consensus 430 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 458 (514)
. ..|+.|+..|+++.+.++++..+.-.+
T Consensus 354 d-E~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 354 D-EMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred h-HHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 5 666777777777777666665554443
No 34
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-24 Score=191.43 Aligned_cols=460 Identities=14% Similarity=0.084 Sum_probs=336.2
Q ss_pred hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHH------HhhcccCc
Q 010276 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQA------LQYYKIVP 77 (514)
Q Consensus 4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a------l~~~p~~~ 77 (514)
++-+++.+.-.|.|..|.-+...-. -........++.+.++.+.+++++|...+.++ +..+|.+.
T Consensus 52 ~~~~aq~l~~~~~y~ra~~lit~~~---------le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~ 122 (611)
T KOG1173|consen 52 IYWLAQVLYLGRQYERAAHLITTYK---------LEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA 122 (611)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhh---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh
Confidence 4456677778888888766554221 12344557788999999999999999998855 11111110
Q ss_pred hhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCccHHHHHHHHHHHHhcCC
Q 010276 78 KQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRH 156 (514)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~ 156 (514)
...+ ....+.+ .....-...+.+..|.+|....+.++|...+.. +..+....++...+-....-..
T Consensus 123 -------~~~l---~~n~~~~--~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~- 189 (611)
T KOG1173|consen 123 -------ANTL---ELNSAGE--DLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTA- 189 (611)
T ss_pred -------hcee---ccCcccc--cccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcch-
Confidence 0000 0000000 001112345667788999999999999988887 3444555555544433332221
Q ss_pred hhhHHHHHHHHHh-----cCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCH
Q 010276 157 NRGAVACYKECLR-----HCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDY 231 (514)
Q Consensus 157 ~~~A~~~~~~~l~-----~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (514)
.+.+..... ....+.+....+..+......-......... ........+.......+..++..+++
T Consensus 190 ----~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~-----~sl~~l~~~~dll~~~ad~~y~~c~f 260 (611)
T KOG1173|consen 190 ----QEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNED-----ESLIGLAENLDLLAEKADRLYYGCRF 260 (611)
T ss_pred ----hHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCch-----hhhhhhhhcHHHHHHHHHHHHHcChH
Confidence 111111111 1111112222221111000000000000000 00011122233344568899999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhh
Q 010276 232 KGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS 311 (514)
Q Consensus 232 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 311 (514)
.+..++++.+++.+|-++.++-...-++...|+..+-...-.+.++..|+.+..|+..|..|...|++.+|.++|.++..
T Consensus 261 ~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~ 340 (611)
T KOG1173|consen 261 KECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATT 340 (611)
T ss_pred HHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh
Confidence 99999999999999988777665555999999999988888999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHH
Q 010276 312 IDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGL 389 (514)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l 389 (514)
++|....+|...|..+.. +..++|+..|..|-+..|..-.....+|.-|...++++-|...|.+++.+.|.+ -....+
T Consensus 341 lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~El 420 (611)
T KOG1173|consen 341 LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHEL 420 (611)
T ss_pred cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhh
Confidence 999999999999999888 999999999999999999988888999999999999999999999999999999 578899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhC----C---CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 010276 390 VHSYLQFSKVKEALYAAREAMKAM----P---QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELH 462 (514)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~~~~~~----p---~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 462 (514)
|.+.+..+.|.+|..+|+.++..- + .-...+.++|.++.+. +.+++|+.+|++++.+.|.++.++..+|.+|
T Consensus 421 gvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl-~~~~eAI~~~q~aL~l~~k~~~~~asig~iy 499 (611)
T KOG1173|consen 421 GVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL-NKYEEAIDYYQKALLLSPKDASTHASIGYIY 499 (611)
T ss_pred hheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH-hhHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Confidence 999999999999999999998432 2 2345689999999999 9999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHH
Q 010276 463 VIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVF 495 (514)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~ 495 (514)
..+|+++.|++.|.+++-+.|++. +-..|+.+.
T Consensus 500 ~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 500 HLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 999999999999999999999985 444444443
No 35
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.95 E-value=6.7e-23 Score=206.67 Aligned_cols=424 Identities=10% Similarity=0.027 Sum_probs=265.0
Q ss_pred hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhh--hhhhhhhhhccccCCCCcccccccCChhHHHHHHHH
Q 010276 39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQN--STSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIAS 116 (514)
Q Consensus 39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~ 116 (514)
.......+..+-..+.+.|++++|++.|+++...+.-.+... ..+...+...|....|...+......+...+..+-.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 334445566666777789999999999999876543222111 112222233333333333332111123333344444
Q ss_pred HHHhcCCHHHHHHHHhcCCCC--CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCHHHHHHHHHhccCcccHhH
Q 010276 117 CHFALGETKAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCP-FFIEAITALAELGATPKDIIS 193 (514)
Q Consensus 117 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~ 193 (514)
.+.+.|++++|..+++.+... ..+...+..+...|.+.|+.++|..+|+++.+... .+...|.
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyn-------------- 511 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG-------------- 511 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH--------------
Confidence 444455555555554443222 23444444444455555555555555554443321 1222222
Q ss_pred HHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhCChHHHHHHH
Q 010276 194 LFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF-PNNIHILLEMAKVDAIIGKNDEAILNF 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~ 272 (514)
.+...|.+.|++++|..+|+.+.... ..+...+..+...+.+.|++++|.+.|
T Consensus 512 --------------------------aLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf 565 (1060)
T PLN03218 512 --------------------------ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 565 (1060)
T ss_pred --------------------------HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 22666778888888888888876532 124567778888888888888888888
Q ss_pred HHHHhh----CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcC-CCChHHHHHHHHHHhh-cChhHHHHHHHHHHHh-
Q 010276 273 EKVRSI----DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSID-PSRPEVFVALSVLWER-KDERGALSYAEKSIRI- 345 (514)
Q Consensus 273 ~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~- 345 (514)
.++... .| +...+..+...|.+.|++++|.++|+.+.+.. +.++..|..+...|.. |++++|...|+++...
T Consensus 566 ~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G 644 (1060)
T PLN03218 566 AEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644 (1060)
T ss_pred HHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 887652 33 34567777778888888888888888887765 4456677777766666 8888888888887765
Q ss_pred -cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhc--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHH
Q 010276 346 -DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR--PDLRSYQGLVHSYLQFSKVKEALYAAREAMKA--MPQSAKAL 420 (514)
Q Consensus 346 -~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~ 420 (514)
.|+ ...+..+...+.+.|++++|...++.+.+.. |+...|..+...|.+.|++++|..+|+++... .| +...|
T Consensus 645 v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvty 722 (1060)
T PLN03218 645 VKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTM 722 (1060)
T ss_pred CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHH
Confidence 343 5567777788888888888888888877653 45577888888888888888888888877653 34 36677
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhC--CCchHHHHHHHHHH
Q 010276 421 KLVGDVHASNASGREKAKKFYESALRL--EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW--ADDSLHVKLAQVFA 496 (514)
Q Consensus 421 ~~l~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 496 (514)
..+...|.+. |++++|.+.|++.... .|+ ...+..+...+.+.|++++|..++..+.+.. |+...+..+..++.
T Consensus 723 N~LI~gy~k~-G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 723 NALITALCEG-NQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 7888888877 8888888888876653 343 4566677778888888888888888887754 33334444432222
Q ss_pred HhccHHHHHHHHH
Q 010276 497 ATNMLQEALSHYE 509 (514)
Q Consensus 497 ~~g~~~~A~~~~~ 509 (514)
+++++|....+
T Consensus 801 --~~y~ka~~l~~ 811 (1060)
T PLN03218 801 --RRFEKACALGE 811 (1060)
T ss_pred --HHHHHHhhhhh
Confidence 34555554443
No 36
>PLN03077 Protein ECB2; Provisional
Probab=99.95 E-value=2.2e-24 Score=220.84 Aligned_cols=475 Identities=12% Similarity=0.006 Sum_probs=354.3
Q ss_pred HHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh--cccCchhhhhhhh
Q 010276 8 ITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQY--YKIVPKQNSTSSR 85 (514)
Q Consensus 8 ~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 85 (514)
+..+.+.|+++.|..+.+.+. ..+..+|..+...|.+.|++++|+..|+++... .|+...+... ..
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~-----------~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~l-l~ 296 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMP-----------RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV-IS 296 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCC-----------CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH-HH
Confidence 445556666666665544321 123347888889999999999999999998765 5654444333 33
Q ss_pred hhhhccccCCCCcccc----cccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHH
Q 010276 86 SSLSTSNRSSSPNSFN----VSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAV 161 (514)
Q Consensus 86 ~~~~~~~~~~a~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 161 (514)
.+...|+.+.+.+.+. .....+..++..+...|.+.|++++|..+|+.+.. .+...|..+...|.+.|++++|+
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--KDAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHHhCCCHHHHH
Confidence 4445566666665552 12334677888999999999999999999999853 46678999999999999999999
Q ss_pred HHHHHHHhc--CCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHH
Q 010276 162 ACYKECLRH--CPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFA 239 (514)
Q Consensus 162 ~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 239 (514)
..|+++.+. .|+.......+ ..+...++...+.+.......... .........+...|.+.|++++|.++|+
T Consensus 375 ~lf~~M~~~g~~Pd~~t~~~ll-~a~~~~g~~~~a~~l~~~~~~~g~-----~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 375 ETYALMEQDNVSPDEITIASVL-SACACLGDLDVGVKLHELAERKGL-----ISYVVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred HHHHHHHHhCCCCCceeHHHHH-HHHhccchHHHHHHHHHHHHHhCC-----CcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999988654 36554433333 333444444333222221111110 1112233345677888888899988888
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCC-CChH
Q 010276 240 ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP-SRPE 318 (514)
Q Consensus 240 ~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 318 (514)
++.+ .+...|..+...|...|+.++|+..|+++....+.+...+..+...+...|..+.+.+++..+++... .+..
T Consensus 449 ~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 449 NIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred hCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 7643 34567888888888888888898888888765455556677777778888888888888888776432 2334
Q ss_pred HHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh--cCChHHHHHHHHHHHh
Q 010276 319 VFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGLVHSYLQ 395 (514)
Q Consensus 319 ~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 395 (514)
....+...|.. |+.++|...|+.. +.+...|..+...|...|+.++|+..|+++.+. .|+..++..+...+.+
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence 44556666666 9999999999886 556889999999999999999999999998874 5777888888899999
Q ss_pred cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHH
Q 010276 396 FSKVKEALYAAREAMKAMP--QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVS 473 (514)
Q Consensus 396 ~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 473 (514)
.|++++|..+|+.+.+..+ .+...+..+...+.+. |++++|.+.+++. ...|+ +.+|..|...+...|+.+.+..
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~-G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA-GKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC-CCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHH
Confidence 9999999999999985432 2367889999999998 9999999999885 45665 6788888888999999999999
Q ss_pred HHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHh
Q 010276 474 LLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAAL 512 (514)
Q Consensus 474 ~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al 512 (514)
..++++++.|++. .+..++.+|...|++++|.+..+..-
T Consensus 679 ~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred HHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999999999885 88888999999999999999887653
No 37
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.95 E-value=3.6e-23 Score=202.98 Aligned_cols=454 Identities=11% Similarity=0.009 Sum_probs=295.2
Q ss_pred chHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhh
Q 010276 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (514)
Q Consensus 3 ~~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 82 (514)
+.++++-...++|+++.|......++...+.++. ....+..++...|++++|+.++++++ +|.+......
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~--------av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~l 105 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG--------QVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGL 105 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh--------hHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHH
Confidence 3466777888999999999988887764332211 12256666777799999999999999 5555544444
Q ss_pred h--hhhhhhccccCCCCccc---ccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CccHHHHHHHHHHHHhcCC
Q 010276 83 S--SRSSLSTSNRSSSPNSF---NVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSK-ARNLQMSLLMAKLYRNSRH 156 (514)
Q Consensus 83 ~--~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 156 (514)
+ +.++...|++.+|.+.+ ....|++++++..++..+...++.++|+..++++... |.... +..++.++...++
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~-~l~layL~~~~~~ 184 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN-YMTLSYLNRATDR 184 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH-HHHHHHHHHhcch
Confidence 4 77888889999888888 2366778888888899999999999999999996544 55333 3556666666777
Q ss_pred hhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCch-hHHhHHHHHHHHHHhcCHHHHH
Q 010276 157 NRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSS-RWLHRYVEAQCCIASNDYKGGL 235 (514)
Q Consensus 157 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~ 235 (514)
..+|+..|+++++.+|++...+..+.......+-...+.+.+.....-. ...+ .++.. ..+....+.+
T Consensus 185 ~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f----~~~~~~~l~~-~~~a~~vr~a------ 253 (822)
T PRK14574 185 NYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV----SAEHYRQLER-DAAAEQVRMA------ 253 (822)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc----CHHHHHHHHH-HHHHHHHhhc------
Confidence 7779999999999999999988777555444443333332222211000 0010 01111 1111111000
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC---CCC----HHHHHHHHHHHHHhCChhHHHHHHHH
Q 010276 236 ELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID---PYI----MTYMDEYAMLLKVKCDYSKLSKLVHD 308 (514)
Q Consensus 236 ~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 308 (514)
.. |...+ -.+---.+.|+..++..+... |.. ..+....-.++...|++.++++.|+.
T Consensus 254 ------~~--~~~~~--------~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~ 317 (822)
T PRK14574 254 ------VL--PTRSE--------TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEA 317 (822)
T ss_pred ------cc--ccccc--------hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 00 00000 000001233444445544422 221 12233344455556666666666665
Q ss_pred HhhcC-CCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhccc------CchhHHHHHHHHHhcCChHHHHHHHHHhHhhc
Q 010276 309 LLSID-PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDER------HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR 380 (514)
Q Consensus 309 ~~~~~-~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 380 (514)
+.... |-.+.+....|..|.. +++++|+.+|.+++...|. .......+...+...+++++|..++++..+..
T Consensus 318 l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 318 MEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 55433 2233344455555555 6666666666666554321 11223455666667777777777777766543
Q ss_pred C---------------Ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 010276 381 P---------------DL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESA 444 (514)
Q Consensus 381 ~---------------~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 444 (514)
| +. .....++.++...|++.+|.+.+++.+...|.++.++..+|.++... |.+.+|...++.+
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~R-g~p~~A~~~~k~a 476 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLAR-DLPRKAEQELKAV 476 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Confidence 3 22 34667788889999999999999999999999999999999999998 9999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHH
Q 010276 445 LRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVF 495 (514)
Q Consensus 445 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 495 (514)
..++|++..+...++.++..+|++++|.....++++..|++.....+...+
T Consensus 477 ~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~r~~ 527 (822)
T PRK14574 477 ESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELDRQR 527 (822)
T ss_pred hhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHHHHH
Confidence 999999999999999999999999999999999999999886555555544
No 38
>PLN03077 Protein ECB2; Provisional
Probab=99.95 E-value=8.6e-24 Score=216.46 Aligned_cols=448 Identities=11% Similarity=0.042 Sum_probs=219.7
Q ss_pred hHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh--cccCchhhhhhhhhhhhccccCCCCccc----ccccCChhHHHHHHH
Q 010276 42 KAENLIILGDSLFRDREYRRAIHTYKQALQY--YKIVPKQNSTSSRSSLSTSNRSSSPNSF----NVSAINENEVKYKIA 115 (514)
Q Consensus 42 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~la 115 (514)
+..+|..+...+.+.|++++|+..|+++... .|+...+...+ ..+...++...+.+.+ ......+..+...+.
T Consensus 151 d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL-RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH-HHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 4557888899999999999999999998753 45544443332 2222333333333332 112223455666777
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhc--CCCCHH-----------------
Q 010276 116 SCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRH--CPFFIE----------------- 176 (514)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~----------------- 176 (514)
..|.+.|++++|..+|+.++. .+...|..+...|.+.|++++|+..|.++... .|+...
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 888888888888888888743 35567777888888888888888888887654 344322
Q ss_pred -----------------HHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHH
Q 010276 177 -----------------AITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFA 239 (514)
Q Consensus 177 -----------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 239 (514)
.+..+...+...++...+......... .+...| ......+.+.|++++|+.+|+
T Consensus 308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~d~~s~---n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET------KDAVSW---TAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC------CCeeeH---HHHHHHHHhCCCHHHHHHHHH
Confidence 222333333333333322222222110 011111 222344444455555555554
Q ss_pred HHHHh--CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC
Q 010276 240 ELLQR--FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP-YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR 316 (514)
Q Consensus 240 ~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 316 (514)
++... .|+. ..+..+-..+...|++++|.+.+..+.+... .+..++..+...|.+.|++++|.++|+++.+ .+
T Consensus 379 ~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d 454 (857)
T PLN03077 379 LMEQDNVSPDE-ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KD 454 (857)
T ss_pred HHHHhCCCCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CC
Confidence 44332 1222 2222222333344444444444444433321 1233444455555555555555555554432 22
Q ss_pred hHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhH-----------------------------------HHHHHHH
Q 010276 317 PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGY-----------------------------------IMKGNLL 360 (514)
Q Consensus 317 ~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~ 360 (514)
...|..+...+.. |+.++|+..|+++....+.+...+ ..+...|
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 3344444444444 555555555555543211111111 2233444
Q ss_pred HhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcCCChHHHH
Q 010276 361 LSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKA--MPQSAKALKLVGDVHASNASGREKAK 438 (514)
Q Consensus 361 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~A~ 438 (514)
.+.|+.++|...|+.. .|+..+|..+...|...|+.++|+..|+++.+. .|+ ...+..+-..+... |..++|.
T Consensus 535 ~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~-g~v~ea~ 609 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRS-GMVTQGL 609 (857)
T ss_pred HHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhc-ChHHHHH
Confidence 4455555555555443 333344555555555555555555555555442 233 22233333334444 5555555
Q ss_pred HHHHHHHhh---CCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHhccHHHHHHHHHHHh
Q 010276 439 KFYESALRL---EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAAL 512 (514)
Q Consensus 439 ~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 512 (514)
.+|+...+. .|+ ...+..+..++.+.|++++|.+.++++ ...|+..+|..+-..+...|+.+.+....++.+
T Consensus 610 ~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~ 684 (857)
T PLN03077 610 EYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVELGELAAQHIF 684 (857)
T ss_pred HHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 555554422 222 234455555555555555555555543 234444445544444444555555554444443
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.95 E-value=1.3e-23 Score=195.89 Aligned_cols=357 Identities=17% Similarity=0.157 Sum_probs=289.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhcc
Q 010276 108 NEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGA 186 (514)
Q Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 186 (514)
....+..|...+..|++++|..++..+ ...|.++.+|+.+|.+|.++|+.+++...+-.+-.++|.+.+.|..+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l----- 213 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL----- 213 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH-----
Confidence 556677788889999999999999995 55599999999999999999999999999999999999999999877
Q ss_pred CcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChH
Q 010276 187 TPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKND 266 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~ 266 (514)
+....+.|++.+|.-+|.++++.+|.+....+..+.+|.++|+..
T Consensus 214 -----------------------------------adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~ 258 (895)
T KOG2076|consen 214 -----------------------------------ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLK 258 (895)
T ss_pred -----------------------------------HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHH
Confidence 666778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCC--CChHHHHHHHHHHhh-cChhHHHHH
Q 010276 267 EAILNFEKVRSIDPYI-----MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP--SRPEVFVALSVLWER-KDERGALSY 338 (514)
Q Consensus 267 ~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~-~~~~~A~~~ 338 (514)
.|...|.+++...|.. .......+..+...++-+.|++.++.++.... ...+.+..++.++.. ..++.+...
T Consensus 259 ~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~ 338 (895)
T KOG2076|consen 259 RAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMK 338 (895)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHH
Confidence 9999999999999832 22334457777888888999999999988322 223344455555555 777777766
Q ss_pred HHHHHHh--ccc--------------------------Cchh-HHHHHHHHHhcCChHHHHHHHHHhHhhcCCh--HHHH
Q 010276 339 AEKSIRI--DER--------------------------HIPG-YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL--RSYQ 387 (514)
Q Consensus 339 ~~~~~~~--~~~--------------------------~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~ 387 (514)
....... .++ +..+ ...++.+..+.++..+++..+..--...|.. ..+.
T Consensus 339 i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~ 418 (895)
T KOG2076|consen 339 IVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYL 418 (895)
T ss_pred HHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHH
Confidence 6554431 000 1122 4455555566666666666665544444655 6789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 010276 388 GLVHSYLQFSKVKEALYAAREAMKAMPQ-SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG 466 (514)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 466 (514)
.++.++...|++.+|+.++..+....+. +..+|+.+|.||..+ |.+++|+.+|++++...|++.++...|+.++.++|
T Consensus 419 d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l-~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g 497 (895)
T KOG2076|consen 419 DLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL-GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLG 497 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcC
Confidence 9999999999999999999999987654 477999999999999 99999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhhCCCc----------hHHHHHHHHHHHhccHHHHH
Q 010276 467 RNGDAVSLLERYLKDWADD----------SLHVKLAQVFAATNMLQEAL 505 (514)
Q Consensus 467 ~~~~A~~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~A~ 505 (514)
+.++|.+.++....-++.+ .+......++.+.|+.++=+
T Consensus 498 ~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 498 NHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred CHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999876333211 47788899999999988743
No 40
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.95 E-value=7e-23 Score=184.03 Aligned_cols=377 Identities=13% Similarity=0.082 Sum_probs=326.0
Q ss_pred hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHH
Q 010276 39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCH 118 (514)
Q Consensus 39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 118 (514)
.......|..-++.+.+.+-++-|...|..+++.+| ....++.+.+..-
T Consensus 512 eed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-------------------------------~k~slWlra~~~e 560 (913)
T KOG0495|consen 512 EEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-------------------------------CKKSLWLRAAMFE 560 (913)
T ss_pred cchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-------------------------------chhHHHHHHHHHH
Confidence 345566888889999999999999999999999987 4445666666666
Q ss_pred HhcCCHHHHHHHHhcCC-CCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhc
Q 010276 119 FALGETKAAIVEMEGIP-SKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQ 197 (514)
Q Consensus 119 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 197 (514)
-..|..++-..+|++.. ..|.....|++.+..+...|+...|...+.++++.+|++.++|..-
T Consensus 561 k~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaa---------------- 624 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAA---------------- 624 (913)
T ss_pred HhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHH----------------
Confidence 67888888888888854 4488899999999999999999999999999999999999998654
Q ss_pred cCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 010276 198 TPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRS 277 (514)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 277 (514)
..+.+...+++.|..+|.++....|. ..+|+.-+.+...+++.++|+..++++++
T Consensus 625 ------------------------vKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk 679 (913)
T KOG0495|consen 625 ------------------------VKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALK 679 (913)
T ss_pred ------------------------HHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHH
Confidence 45556778899999999999887664 48888889999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHH
Q 010276 278 IDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMK 356 (514)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~ 356 (514)
..|.....|..+|.++.+.++.+.|...|...+...|..+..|..++.+-.. |..-.|...++++.-.+|++...|...
T Consensus 680 ~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~ 759 (913)
T KOG0495|consen 680 SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLES 759 (913)
T ss_pred hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHH
Confidence 9999999999999999999999999999999999999999999999998888 889999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChH
Q 010276 357 GNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGRE 435 (514)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 435 (514)
..+-.+.|+.+.|.....++++..|++ ..|..-..+.-.-++-.. ...+++....++.++...|..+... .+++
T Consensus 760 Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTk----s~DALkkce~dphVllaia~lfw~e-~k~~ 834 (913)
T KOG0495|consen 760 IRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTK----SIDALKKCEHDPHVLLAIAKLFWSE-KKIE 834 (913)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchH----HHHHHHhccCCchhHHHHHHHHHHH-HHHH
Confidence 999999999999999999999999998 455554444444444333 3445566678899999999999988 9999
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHH
Q 010276 436 KAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLA 492 (514)
Q Consensus 436 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~ 492 (514)
+|.+.|.++++.+|++.++|..+-..+...|.-++-.+++.++....|... .|....
T Consensus 835 kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 835 KAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 999999999999999999999999999999999999999999999999873 554443
No 41
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.95 E-value=2.6e-23 Score=207.88 Aligned_cols=424 Identities=12% Similarity=0.009 Sum_probs=335.9
Q ss_pred HHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCH
Q 010276 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET 124 (514)
Q Consensus 45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 124 (514)
.|..+...+.+.|++++|++.|+.+....|.. .+...+..+..++.+.+++
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~-----------------------------~~~~t~~~ll~a~~~~~~~ 139 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFT-----------------------------LPASTYDALVEACIALKSI 139 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-----------------------------CCHHHHHHHHHHHHhCCCH
Confidence 56777788889999999999999877543311 2344566677788889999
Q ss_pred HHHHHHHhcCCCC--CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcC
Q 010276 125 KAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRS 202 (514)
Q Consensus 125 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 202 (514)
+.|..++..+... ..+...+..+...|.+.|++++|.+.|+++.+ | +...|..+...+...++..+++.......
T Consensus 140 ~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~ 216 (697)
T PLN03081 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMW 216 (697)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9999988876332 45788889999999999999999999999864 3 45566677666666676666555444433
Q ss_pred CCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Q 010276 203 GRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF-PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY 281 (514)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 281 (514)
.... .+ +...+......+...|....+.+++..+.+.. ..+..++..+...|.+.|+.++|.+.|++.. +.
T Consensus 217 ~~g~----~p-~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~ 288 (697)
T PLN03081 217 EDGS----DA-EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EK 288 (697)
T ss_pred HhCC----CC-ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CC
Confidence 2211 11 11222333556677889999999888877643 3356788889999999999999999999864 45
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcC-CCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhc-ccCchhHHHHHH
Q 010276 282 IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSID-PSRPEVFVALSVLWER-KDERGALSYAEKSIRID-ERHIPGYIMKGN 358 (514)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 358 (514)
+..+|..+...|.+.|++++|..+|+++.... ..+...+..+...+.. |++++|...+..+++.. +.+..++..+..
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~ 368 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence 77899999999999999999999999997643 3345566666666666 99999999999999875 556788999999
Q ss_pred HHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcCCChHH
Q 010276 359 LLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKA--MPQSAKALKLVGDVHASNASGREK 436 (514)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~ 436 (514)
.|.+.|++++|...|+++.+ |+..+|..+...|.+.|+.++|++.|+++... .|+ ...+..+...+... |..++
T Consensus 369 ~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~-g~~~~ 444 (697)
T PLN03081 369 LYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYS-GLSEQ 444 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcC-CcHHH
Confidence 99999999999999998854 66688999999999999999999999999874 354 66677777888887 99999
Q ss_pred HHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 437 AKKFYESALRLEPG--YLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 437 A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
|..+|+...+..+- +...+..+..++.+.|++++|.+.++++ ...|+..+|..+...+...|+.+.|...+++.++
T Consensus 445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 99999998864322 2457888999999999999999999874 3556777999999999999999999999988765
No 42
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.94 E-value=7.5e-23 Score=187.62 Aligned_cols=413 Identities=19% Similarity=0.121 Sum_probs=321.4
Q ss_pred hhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHh
Q 010276 41 LKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120 (514)
Q Consensus 41 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 120 (514)
..+..|-.+.-.+...|+|..+.+.|++++... ....+.++.++.++..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-------------------------------~~~~e~w~~~als~sa 369 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-------------------------------FGEHERWYQLALSYSA 369 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------------------------------hhhHHHHHHHHHHHHH
Confidence 345566667777788899999999999887652 3667889999999999
Q ss_pred cCCHHHHHHHHhc-CCCC--CccHHHHHHHHHH-HHhcCChhhHHHHHHHHHhcCCC-----CHHHHHHHHHhccCcccH
Q 010276 121 LGETKAAIVEMEG-IPSK--ARNLQMSLLMAKL-YRNSRHNRGAVACYKECLRHCPF-----FIEAITALAELGATPKDI 191 (514)
Q Consensus 121 ~g~~~~A~~~~~~-~~~~--~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~~~~~~~ 191 (514)
.|.-..|+.+++. +... |.++..+...+.+ ..+.|..++++.+-.+++...-. .+.++..++-.+....
T Consensus 370 ag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A-- 447 (799)
T KOG4162|consen 370 AGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA-- 447 (799)
T ss_pred hccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--
Confidence 9999999999988 4444 6677777666654 55678899999999999874311 1112222211110000
Q ss_pred hHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHH
Q 010276 192 ISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILN 271 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 271 (514)
.....+ -.+.....++++.++++++.+|+|+.+.+.++.-|...++.+.|...
T Consensus 448 ------------------~~a~~~---------seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~ 500 (799)
T KOG4162|consen 448 ------------------RQANLK---------SERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDY 500 (799)
T ss_pred ------------------hcCCCh---------HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHH
Confidence 000000 01223356889999999999999999999999999999999999999
Q ss_pred HHHHHhh-CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC
Q 010276 272 FEKVRSI-DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERH 349 (514)
Q Consensus 272 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~ 349 (514)
.+++++. ..+++.+|..++.++...+++.+|+.+.+.++...|+|.........+-.. ++.++++..+...+......
T Consensus 501 ~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~ 580 (799)
T KOG4162|consen 501 AREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAE 580 (799)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhh
Confidence 9999999 456689999999999999999999999999999999876655554444444 88889998888877765432
Q ss_pred chh---------HHHHHHHHHhcCChHHHHHHHHHhHhh---------------------cCCh------HHHHHHHHHH
Q 010276 350 IPG---------YIMKGNLLLSMKRPEAAVIAFRGAQEL---------------------RPDL------RSYQGLVHSY 393 (514)
Q Consensus 350 ~~~---------~~~~~~~~~~~~~~~~A~~~~~~~~~~---------------------~~~~------~~~~~l~~~~ 393 (514)
+.+ ....+......++..+|+..++++... .|+. ..|...+..+
T Consensus 581 ~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~ 660 (799)
T KOG4162|consen 581 YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLF 660 (799)
T ss_pred hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHH
Confidence 222 222333334444556666555554332 1111 2477889999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHH
Q 010276 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVS 473 (514)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 473 (514)
...++.++|..++.++-.++|..+..++..|.++... |..++|...|..++.++|+++.+...+|.++.+.|+..-|..
T Consensus 661 ~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~-~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~ 739 (799)
T KOG4162|consen 661 LLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVK-GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEK 739 (799)
T ss_pred HhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHH-HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHH
Confidence 9999999999999999999999999999999999998 999999999999999999999999999999999999888888
Q ss_pred --HHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHHhcC
Q 010276 474 --LLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAALRL 514 (514)
Q Consensus 474 --~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~l 514 (514)
.+..+++++|.+. +|+.+|.++.+.|+.++|.++|..|++|
T Consensus 740 ~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 740 RSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9999999999985 9999999999999999999999999875
No 43
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.94 E-value=2.7e-24 Score=178.45 Aligned_cols=303 Identities=17% Similarity=0.198 Sum_probs=265.6
Q ss_pred CchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 010276 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (514)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (514)
++.+....+.+|..++..|++.+|+..|..+++.+|++-.+++..|.+|..+|+..-|+..+.+++++.|+...+....|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 34555566777999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCChhHHHHHHHHHhhcCCCCh---HHHHHHHH-------------HHhhcChhHHHHHHHHHHHhcccCchhHH
Q 010276 291 MLLKVKCDYSKLSKLVHDLLSIDPSRP---EVFVALSV-------------LWERKDERGALSYAEKSIRIDERHIPGYI 354 (514)
Q Consensus 291 ~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~-------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 354 (514)
.++.++|.+++|..-|+.++..+|++. ++...++. .+..|+...++.+....+++.|-+...+.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 999999999999999999999999653 22222211 12228999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH----------
Q 010276 355 MKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV---------- 423 (514)
Q Consensus 355 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l---------- 423 (514)
.++.+|...|++..|+..++.+-++..++ +.++.++.+++..|+.+.++...+++++++|++...+-..
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888 8999999999999999999999999999999975443211
Q ss_pred --HHHHHhcCCChHHHHHHHHHHHhhCCCChHH----HHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-hHHHHHHHHHH
Q 010276 424 --GDVHASNASGREKAKKFYESALRLEPGYLGA----ALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFA 496 (514)
Q Consensus 424 --~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~ 496 (514)
+.-.... ++|.++++..++.++.+|..+.+ ...+..|+..-|++.+|+....++++..|++ .++...+..|.
T Consensus 274 es~e~~ie~-~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 274 ESAEQAIEE-KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHHHHHhh-hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 1223344 88999999999999999986554 3447788889999999999999999999997 59999999999
Q ss_pred HhccHHHHHHHHHHHhcC
Q 010276 497 ATNMLQEALSHYEAALRL 514 (514)
Q Consensus 497 ~~g~~~~A~~~~~~al~l 514 (514)
....|++|+..|++|.++
T Consensus 353 ~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKALEL 370 (504)
T ss_pred hhHHHHHHHHHHHHHHhc
Confidence 999999999999999763
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.94 E-value=2.9e-24 Score=185.09 Aligned_cols=441 Identities=15% Similarity=0.142 Sum_probs=340.0
Q ss_pred hhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHH
Q 010276 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF 119 (514)
Q Consensus 40 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 119 (514)
.....+++.++.-|-...-+.+|+..|+-.++.. ..|+...+...+|.+++
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknk-----------------------------mf~nag~lkmnigni~~ 248 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNK-----------------------------MFPNAGILKMNIGNIHF 248 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhccc-----------------------------ccCCCceeeeeecceee
Confidence 4456688889999888888999999888776541 12244555667888888
Q ss_pred hcCCHHHHHHHHhc----CCCC--CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCccc---
Q 010276 120 ALGETKAAIVEMEG----IPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKD--- 190 (514)
Q Consensus 120 ~~g~~~~A~~~~~~----~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~--- 190 (514)
+..+|.+|+..++- ++.. ......+..+|..+.+.|+|++|+..|+.+++..|+...++. |.-++...++
T Consensus 249 kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~n-l~i~~f~i~d~ek 327 (840)
T KOG2003|consen 249 KKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALN-LIICAFAIGDAEK 327 (840)
T ss_pred ehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhh-hhhhheecCcHHH
Confidence 99999999998775 3333 234566788899999999999999999999999997666553 4455555554
Q ss_pred HhHHHhccCCcCCCCCCC-----cCCchhHHh-HHHHHHHH--HHhcCHHHHHHHHHHHHH-----hCCCc---------
Q 010276 191 IISLFAQTPNRSGRAPFD-----HLDSSRWLH-RYVEAQCC--IASNDYKGGLELFAELLQ-----RFPNN--------- 248 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~a~~~--~~~~~~~~A~~~~~~~~~-----~~p~~--------- 248 (514)
..+++.++.........+ ..+|...+. .-.....+ +...+-..|......+.+ ..|+.
T Consensus 328 mkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle 407 (840)
T KOG2003|consen 328 MKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLE 407 (840)
T ss_pred HHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHH
Confidence 456666666655443321 223322211 11111111 112222233333222222 12221
Q ss_pred -----------HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHh--CChhHHHHHHHHHhhcCC
Q 010276 249 -----------IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM-TYMDEYAMLLKVK--CDYSKLSKLVHDLLSIDP 314 (514)
Q Consensus 249 -----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~ 314 (514)
.++-...+-.+++.|+++.|++.++-.-+.+.... .+-.++..+++.+ .++..|..+...++..+.
T Consensus 408 ~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr 487 (840)
T KOG2003|consen 408 SLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR 487 (840)
T ss_pred HHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc
Confidence 12334557778899999999999887666554432 3445565555553 478899999999999999
Q ss_pred CChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHH
Q 010276 315 SRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHS 392 (514)
Q Consensus 315 ~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~ 392 (514)
.++.+..+.|++... |++++|.+.|..++..+....++++++|..+..+|+.++|+.+|-+...+--++ .++..++.+
T Consensus 488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qiani 567 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANI 567 (840)
T ss_pred cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999986555 999999999999999999999999999999999999999999999988776666 889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHH
Q 010276 393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAV 472 (514)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 472 (514)
|....+..+|++++-++..+-|++|.++..+|.+|-+. |+..+|..++-...+..|.+.+..-.||..|....-+++|+
T Consensus 568 ye~led~aqaie~~~q~~slip~dp~ilskl~dlydqe-gdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai 646 (840)
T KOG2003|consen 568 YELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQE-GDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAI 646 (840)
T ss_pred HHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc-cchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHH
Q 010276 473 SLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAA 511 (514)
Q Consensus 473 ~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a 511 (514)
.+|+++.-+.|+.. ....++.|+.+.|++.+|.+.|+..
T Consensus 647 ~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 647 NYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99999999999876 5556799999999999999999864
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.94 E-value=2.6e-23 Score=193.54 Aligned_cols=294 Identities=14% Similarity=0.059 Sum_probs=251.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhC
Q 010276 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM-TYMDEYAMLLKVKC 297 (514)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 297 (514)
...|...+..|+++.|.+.+.++.+..|+....+...|.+....|+++.|..++.++.+..|++. .+....+.++...|
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~ 167 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN 167 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC
Confidence 45688999999999999999999999998888888889999999999999999999999989885 56666799999999
Q ss_pred ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHH----HHHHHHHhcCChHHHHHH
Q 010276 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYI----MKGNLLLSMKRPEAAVIA 372 (514)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~A~~~ 372 (514)
+++.|...++.+.+..|+++.++..++.++.. |++++|.+.+.+..+..+.++.... ....-....+..+++...
T Consensus 168 ~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 168 ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999999999999999999999999988 9999999999999987544333221 222222344455556668
Q ss_pred HHHhHhhcCC----h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHhcCCChHHHHHHHHHHH
Q 010276 373 FRGAQELRPD----L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL--KLVGDVHASNASGREKAKKFYESAL 445 (514)
Q Consensus 373 ~~~~~~~~~~----~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~--~~l~~~~~~~~~~~~~A~~~~~~a~ 445 (514)
+.++....|. + ..+..++..+...|++++|...++++++..|++.... .......... ++.+.+++.+++++
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~-~~~~~~~~~~e~~l 326 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKP-EDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCC-CChHHHHHHHHHHH
Confidence 8888877773 3 7789999999999999999999999999999987532 2233333444 78899999999999
Q ss_pred hhCCCCh--HHHHHHHHHHHHcCChhHHHHHHH--HHHhhCCCchHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 446 RLEPGYL--GAALALAELHVIEGRNGDAVSLLE--RYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 446 ~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
+..|+++ .....+|+++.+.|++++|.++|+ .+++..|++..+..+|.++.+.|+.++|.++|++++.
T Consensus 327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999 889999999999999999999999 6888899998888999999999999999999999875
No 46
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.94 E-value=6.4e-21 Score=192.48 Aligned_cols=447 Identities=12% Similarity=0.054 Sum_probs=340.0
Q ss_pred hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhh
Q 010276 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (514)
Q Consensus 4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (514)
.+.....+.+.|++..|..+.+.+.. .+..+ ...-.+..+-..+.+.|..++|...|+.... |+ ...+..+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~----~gvv~--~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd-~~Tyn~L 443 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEK----RGLLD--MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PT-LSTFNML 443 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHh----CCCCC--chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CC-HHHHHHH
Confidence 34556677788899988887775543 11111 1222333445667788999999999987764 53 3444556
Q ss_pred hhhhhhccccCCCCccccc----ccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC--CccHHHHHHHHHHHHhcCCh
Q 010276 84 SRSSLSTSNRSSSPNSFNV----SAINENEVKYKIASCHFALGETKAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHN 157 (514)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 157 (514)
...+...|+.+.|...+.. .-..+..++..+...+.+.|+.++|..+++.+... ..+...|..+...|.+.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 6667788888888887732 22346778889999999999999999999997543 45888999999999999999
Q ss_pred hhHHHHHHHHHhcC--CCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHH
Q 010276 158 RGAVACYKECLRHC--PFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGL 235 (514)
Q Consensus 158 ~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 235 (514)
++|+..|+++.... |+ ...+..+ ...+.+.|++++|.
T Consensus 524 eeAl~lf~~M~~~Gv~PD-~vTYnsL----------------------------------------I~a~~k~G~~deA~ 562 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPD-RVVFNAL----------------------------------------ISACGQSGAVDRAF 562 (1060)
T ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHH----------------------------------------HHHHHHCCCHHHHH
Confidence 99999999987543 43 3334333 77788999999999
Q ss_pred HHHHHHHHh----CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCChhHHHHHHHHHh
Q 010276 236 ELFAELLQR----FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID-PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLL 310 (514)
Q Consensus 236 ~~~~~~~~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 310 (514)
++++++... .| +...+..+...|.+.|++++|.+.|+.+.+.+ +.+...|..+...|.+.|++++|..+|.++.
T Consensus 563 ~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 563 DVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999763 34 45788889999999999999999999999876 4567899999999999999999999999998
Q ss_pred hcC-CCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhc-ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh--cCChHH
Q 010276 311 SID-PSRPEVFVALSVLWER-KDERGALSYAEKSIRID-ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRS 385 (514)
Q Consensus 311 ~~~-~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 385 (514)
... ..+...+..+...+.. |++++|..+++.+.+.. +.+...+..+...|.+.|++++|...|+++... .|+...
T Consensus 642 ~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt 721 (1060)
T PLN03218 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 752 2235567777776666 99999999999998864 334678999999999999999999999998654 677789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC-ChHHHHHHHHHH
Q 010276 386 YQGLVHSYLQFSKVKEALYAAREAMKA--MPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG-YLGAALALAELH 462 (514)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 462 (514)
|..+...|.+.|++++|.++++++... .|+ ...+..+...+... |++++|...+.++.+.... +...+..+..++
T Consensus 722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~-G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERK-DDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999998764 354 66777777888888 9999999999999885422 234444443333
Q ss_pred HHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 463 VIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
. +++++|....+..+..++. ......+..++|...|++.++
T Consensus 800 ~--~~y~ka~~l~~~v~~f~~g--------~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 800 L--RRFEKACALGEPVVSFDSG--------RPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred H--HHHHHHhhhhhhhhhhhcc--------ccccccchHHHHHHHHHHHHH
Confidence 2 3567777666555544322 222223345678888887654
No 47
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.3e-22 Score=172.63 Aligned_cols=368 Identities=13% Similarity=0.120 Sum_probs=191.8
Q ss_pred HHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccc---cccCChhHHHHHHHHHHHhc
Q 010276 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFN---VSAINENEVKYKIASCHFAL 121 (514)
Q Consensus 45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~la~~~~~~ 121 (514)
.-+.++..+-+.++-.++.-.|...+..+|--......+....+ ++.+.+..... .....+.-.....+....-.
T Consensus 132 inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v--~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~ 209 (564)
T KOG1174|consen 132 INLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV--NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFN 209 (564)
T ss_pred HHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh--cchhhhhhhhhheecCCCccHHHHHHHHHHHHHh
Confidence 33445555555555556777777777766633322222222211 12222111111 11112222223344444445
Q ss_pred CCHHHHHHHHhc--C-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhcc
Q 010276 122 GETKAAIVEMEG--I-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQT 198 (514)
Q Consensus 122 g~~~~A~~~~~~--~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (514)
++...|...+-. . ..-+.+...+..+|.+++..|++++|+..|+++.-.+|+........+-+....++....-...
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~ 289 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALM 289 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHH
Confidence 555555544333 2 3338899999999999999999999999999999999998888766644433333221111111
Q ss_pred CCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhh
Q 010276 199 PNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI 278 (514)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 278 (514)
..++... ......| +.-+...+..+++..|+.+-++.++.+|.+..++...|..+...|+.++|+-.|+.+..+
T Consensus 290 ~~Lf~~~---~~ta~~w---fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 290 DYLFAKV---KYTASHW---FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHhhh---hcchhhh---hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 1100000 0111222 222444555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHH-HHHhh--cChhHHHHHHHHHHHhcccCchhHHH
Q 010276 279 DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALS-VLWER--KDERGALSYAEKSIRIDERHIPGYIM 355 (514)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~-~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~ 355 (514)
.|...+.+..+..+|...|++.+|....+.++...|.+...+..+| .++.. ..-++|.+++++++++.|....+...
T Consensus 364 ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~ 443 (564)
T KOG1174|consen 364 APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNL 443 (564)
T ss_pred chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHH
Confidence 5555555555555555555555555555555555555555555554 22222 23345555555555555555555555
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 010276 356 KGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420 (514)
Q Consensus 356 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 420 (514)
++.++...|++++++..+++.+...|+...+..+|.++...+.+.+|+..|..++.++|++....
T Consensus 444 ~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 444 IAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 55555555555555555555555555555555555555555555555555555555555544333
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.94 E-value=6.8e-26 Score=200.81 Aligned_cols=259 Identities=24% Similarity=0.236 Sum_probs=111.0
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHh-h-CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhc
Q 010276 253 LEMAKVDAIIGKNDEAILNFEKVRS-I-DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERK 330 (514)
Q Consensus 253 ~~la~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 330 (514)
..+|.+++..|++++|++.+.+.+. . .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.++..+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~ 91 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3668888888888888888865544 3 4777888888888888888888888888888888888888877777775558
Q ss_pred ChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhc--CCh-HHHHHHHHHHHhcCCHHHHHHHHH
Q 010276 331 DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR--PDL-RSYQGLVHSYLQFSKVKEALYAAR 407 (514)
Q Consensus 331 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~ 407 (514)
++++|+.+++++.+..+ ++..+.....++...++++++...++++.... |.+ ..|..+|.++.+.|++++|+..++
T Consensus 92 ~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888877654 46667777788888899999888888876543 333 568888899999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-
Q 010276 408 EAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS- 486 (514)
Q Consensus 408 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~- 486 (514)
++++.+|+++.+...++.++... |+.+++...+....+..|+++..+..+|.++...|++++|+.+++++++..|++.
T Consensus 171 ~al~~~P~~~~~~~~l~~~li~~-~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 171 KALELDPDDPDARNALAWLLIDM-GDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHHH-TT-HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-CChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 99999999999998899888887 8888888888888887788888888899999999999999999999999888775
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 487 LHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 487 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
++..+|.++...|+.++|..+++++++
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 888889999999999999998888765
No 49
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-22 Score=179.22 Aligned_cols=425 Identities=19% Similarity=0.146 Sum_probs=309.0
Q ss_pred chHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhh
Q 010276 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (514)
Q Consensus 3 ~~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 82 (514)
...++....+..|+|+.|+......+.+.+.|. -.+.....+|...|+|.+|++--.+.++++|+.+.
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nh--------vlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~k---- 71 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNH--------VLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAK---- 71 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCcc--------chhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhh----
Confidence 345677788999999999988776666444333 35667888999999999999999999999986654
Q ss_pred hhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCccHHHHHHHHHHHHhcC------
Q 010276 83 SSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSR------ 155 (514)
Q Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g------ 155 (514)
.+.++|..+..+|+|++|+..+.+ +...|.+......++.++....
T Consensus 72 ---------------------------gy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~ 124 (539)
T KOG0548|consen 72 ---------------------------GYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLF 124 (539)
T ss_pred ---------------------------HHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhc
Confidence 455666677778888888877777 5555777777766666662220
Q ss_pred ---------------C---hhhHHHHHHHHHhcCCCCHHHHH-------HHHHh-ccCcccHhHHHhccCCcCCCCC---
Q 010276 156 ---------------H---NRGAVACYKECLRHCPFFIEAIT-------ALAEL-GATPKDIISLFAQTPNRSGRAP--- 206 (514)
Q Consensus 156 ---------------~---~~~A~~~~~~~l~~~p~~~~~~~-------~l~~~-~~~~~~~~~~~~~~~~~~~~~~--- 206 (514)
+ .+.+.....+.+..+|.+...+. .++.+ +...... .............|
T Consensus 125 ~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~-~~~~~~~~~~~~~p~~~ 203 (539)
T KOG0548|consen 125 TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLF-YASGIEILASMAEPCKQ 203 (539)
T ss_pred cCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccc-cccccccCCCCCCcccc
Confidence 0 12222223333344443322221 11111 1100000 00000000000000
Q ss_pred --CCcCCc----h------hHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHH
Q 010276 207 --FDHLDS----S------RWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEK 274 (514)
Q Consensus 207 --~~~~~~----~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 274 (514)
...... . .....-.+|...+...++..|++.+..++..+ .+...+...+.+|+..|.+.+.+.....
T Consensus 204 ~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~ 282 (539)
T KOG0548|consen 204 EHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEK 282 (539)
T ss_pred cCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHH
Confidence 000000 0 11223456888899999999999999999999 8889999999999999999999999998
Q ss_pred HHhhCCCC-------HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhc
Q 010276 275 VRSIDPYI-------MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRID 346 (514)
Q Consensus 275 ~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~ 346 (514)
+++..... ..+...+|..+...++++.++..|.+++..... ..+... ...++++...+...-++
T Consensus 283 a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~ 354 (539)
T KOG0548|consen 283 AVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYIN 354 (539)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 88765443 234445677888889999999999998775433 222223 55667777777777778
Q ss_pred ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 010276 347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD 425 (514)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 425 (514)
|.-...-...|+.++..|+|..|+..|.+++..+|++ ..|.+.+.+|.++|.+..|+...+.+++++|+....|...|.
T Consensus 355 pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 355 PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGA 434 (539)
T ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 8877777788999999999999999999999999999 889999999999999999999999999999999999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHH
Q 010276 426 VHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER 477 (514)
Q Consensus 426 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (514)
++..+ .+|++|.+.|+++++.+|++.++...+.++...+.......+..++
T Consensus 435 al~~m-k~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 435 ALRAM-KEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHH-HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 99999 9999999999999999999999999999998876555555666665
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.9e-20 Score=162.44 Aligned_cols=463 Identities=15% Similarity=0.139 Sum_probs=367.8
Q ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccc---cccCChhHHHHHHHHHHH
Q 010276 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFN---VSAINENEVKYKIASCHF 119 (514)
Q Consensus 43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~la~~~~ 119 (514)
...|..-|+--..++++..|...|++|+..+..+...+.-.+.+-++......|.+.++ ..-|.-...++....+-.
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 44788888888899999999999999999998888888888999998888888888883 244556778888888888
Q ss_pred hcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCccc---HhHHHh
Q 010276 120 ALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKD---IISLFA 196 (514)
Q Consensus 120 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~---~~~~~~ 196 (514)
.+|+...|.++|++-..-..+..+|......-.+.+..+.|...|++.+-.+| ....|...+..-...|. ...+++
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 89999999999999655566788898888999999999999999999998888 46667777666544443 345555
Q ss_pred ccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhCChH---HHH--
Q 010276 197 QTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN--IHILLEMAKVDAIIGKND---EAI-- 269 (514)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~---~A~-- 269 (514)
.+...++. +...-.....-|..-..+..++.|..+|.-+++.-|.+ .+++......--+-|+.. +++
T Consensus 232 rAie~~~~------d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 232 RAIEFLGD------DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 55554422 11111111222444556778999999999999998887 333333333333445532 332
Q ss_pred ---HHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChH---------HHHHHHHHHhh--cChhHH
Q 010276 270 ---LNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPE---------VFVALSVLWER--KDERGA 335 (514)
Q Consensus 270 ---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~--~~~~~A 335 (514)
-.|++.++.+|.+.++|..+..+....|+.+.-.+.|++++...|...+ .|.+.+..-.. .+.+.+
T Consensus 306 KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3477888999999999999999999999999999999999998776432 22222222111 899999
Q ss_pred HHHHHHHHHhcccC----chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010276 336 LSYAEKSIRIDERH----IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMK 411 (514)
Q Consensus 336 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (514)
.+.|+.++++-|.. +.+|...|....++.+...|.+.+-.++...|.+..+.....+-.+.++++....+|++.++
T Consensus 386 r~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 386 RQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999998874 56788899999999999999999999999999998888888889999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC-hH-HHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHH
Q 010276 412 AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY-LG-AALALAELHVIEGRNGDAVSLLERYLKDWADDSLHV 489 (514)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 489 (514)
..|.+..+|...|..-..+ |+.+.|...|+-|+....-+ |+ .|......-...|.++.|..+|++.++..+...+|.
T Consensus 466 ~~Pe~c~~W~kyaElE~~L-gdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWi 544 (677)
T KOG1915|consen 466 FSPENCYAWSKYAELETSL-GDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWI 544 (677)
T ss_pred cChHhhHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHH
Confidence 9999999999999999998 99999999999999865333 33 556677778889999999999999999999888888
Q ss_pred HHHHHHH-----Hhc-----------cHHHHHHHHHHHhc
Q 010276 490 KLAQVFA-----ATN-----------MLQEALSHYEAALR 513 (514)
Q Consensus 490 ~l~~~~~-----~~g-----------~~~~A~~~~~~al~ 513 (514)
..|..-. +.| ....|...|++|..
T Consensus 545 sFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 545 SFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 8887665 445 56788888888753
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.92 E-value=3.6e-25 Score=196.18 Aligned_cols=259 Identities=22% Similarity=0.237 Sum_probs=120.6
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 010276 220 VEAQCCIASNDYKGGLELFAELLQR--FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (514)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (514)
..|.+++..|++++|++++.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 3489999999999999999766544 488999999999999999999999999999999999999888888888 7999
Q ss_pred ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhc--ccCchhHHHHHHHHHhcCChHHHHHHHH
Q 010276 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRID--ERHIPGYIMKGNLLLSMKRPEAAVIAFR 374 (514)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 374 (514)
++++|..++.+..+..+ ++..+.....++.. ++++++...++++.... |.++..+..+|.++.+.|++++|+..|+
T Consensus 92 ~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999887664 45556666555555 99999999999977654 6678889999999999999999999999
Q ss_pred HhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChH
Q 010276 375 GAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG 453 (514)
Q Consensus 375 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 453 (514)
++++.+|++ .+...++.++...|+++++...++......|+++..+..+|.++... |++++|+.+|+++++.+|+++.
T Consensus 171 ~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l-g~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 171 KALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL-GRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH-T-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc-cccccccccccccccccccccc
Confidence 999999998 78899999999999999999999999988899999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276 454 AALALAELHVIEGRNGDAVSLLERYLKD 481 (514)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (514)
++..+|.++...|+.++|..+.++++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999988753
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.92 E-value=1.2e-21 Score=182.47 Aligned_cols=296 Identities=10% Similarity=0.003 Sum_probs=238.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHH
Q 010276 144 SLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQ 223 (514)
Q Consensus 144 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (514)
....|.+....|+++.|.+.+.++.+..|+....+. ..|.
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~l----------------------------------------laA~ 126 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLI----------------------------------------KAAE 126 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHH----------------------------------------HHHH
Confidence 356677888889999999998888887776544443 3377
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHH
Q 010276 224 CCIASNDYKGGLELFAELLQRFPNNI-HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKL 302 (514)
Q Consensus 224 ~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 302 (514)
.....|+++.|..++.++.+..|++. .+....+.++...|+++.|...+++..+..|+++.++..++.++...|++++|
T Consensus 127 aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a 206 (409)
T TIGR00540 127 AAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQAL 206 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Confidence 78888999999999999888888774 46666788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHH-----HhhcChhHHHHHHHHHHHhcc----cCchhHHHHHHHHHhcCChHHHHHHH
Q 010276 303 SKLVHDLLSIDPSRPEVFVALSVL-----WERKDERGALSYAEKSIRIDE----RHIPGYIMKGNLLLSMKRPEAAVIAF 373 (514)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~ 373 (514)
.+.+.+..+....++.....+-.. ...+..+++...+.++....| +++..+..++..+...|++++|.+.+
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l 286 (409)
T TIGR00540 207 DDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEII 286 (409)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 999988887755555443222111 111344455667777777777 57899999999999999999999999
Q ss_pred HHhHhhcCChHH---HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHhcCCChHHHHHHHH--HHHh
Q 010276 374 RGAQELRPDLRS---YQGLVHSYLQFSKVKEALYAAREAMKAMPQSA--KALKLVGDVHASNASGREKAKKFYE--SALR 446 (514)
Q Consensus 374 ~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~~~~~~~A~~~~~--~a~~ 446 (514)
+++++..|++.. ...........++.+.+++.++++++..|+++ ..+..+|.++... |++++|.++|+ ++++
T Consensus 287 ~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~-~~~~~A~~~le~a~a~~ 365 (409)
T TIGR00540 287 FDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKH-GEFIEAADAFKNVAACK 365 (409)
T ss_pred HHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHc-ccHHHHHHHHHHhHHhh
Confidence 999999999842 13333444556889999999999999999999 8899999999998 99999999999 5778
Q ss_pred hCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276 447 LEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD 481 (514)
Q Consensus 447 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (514)
..|+... +..+|.++.+.|+.++|.+++++++..
T Consensus 366 ~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 366 EQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8887655 669999999999999999999998764
No 53
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.92 E-value=1.4e-21 Score=180.79 Aligned_cols=292 Identities=13% Similarity=0.059 Sum_probs=239.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH-HHHHHHhCChHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHH
Q 010276 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEM-AKVDAIIGKNDEAILNFEKVRSIDPYIMTY-MDEYAMLLKV 295 (514)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l-a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 295 (514)
.+..|...+..|++++|.+.+.+..+..+ ++.+++.+ +.+....|+++.|..++.++.+.+|++... ....+.++..
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 35668888889999999988887655433 35555555 666699999999999999999999988543 3455899999
Q ss_pred hCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHH--------HHHHHHHhcCCh
Q 010276 296 KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYI--------MKGNLLLSMKRP 366 (514)
Q Consensus 296 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 366 (514)
.|++++|...++++.+..|+++.++..++.++.. |++++|+..+.+..+..+.++.... .+........+-
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999999999999999999999988 9999999999999887665443222 112222223334
Q ss_pred HHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010276 367 EAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESAL 445 (514)
Q Consensus 367 ~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~ 445 (514)
+.....++..-...|++ .....++..+...|+.++|...++++++. |.++......+.+ .. ++.++++...++.+
T Consensus 246 ~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~-~~~~~al~~~e~~l 321 (398)
T PRK10747 246 EGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KT-NNPEQLEKVLRQQI 321 (398)
T ss_pred HHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cC-CChHHHHHHHHHHH
Confidence 44555555554555655 68899999999999999999999999995 4456666555555 33 88999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHhccHHHHHHHHHHHhcC
Q 010276 446 RLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRL 514 (514)
Q Consensus 446 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~l 514 (514)
+..|+++..+..+|.++...|++++|.+.|+++++..|++..+..++.++.+.|+.++|.++|++++.+
T Consensus 322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999899999999999999999999999753
No 54
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.92 E-value=1.9e-21 Score=178.52 Aligned_cols=375 Identities=15% Similarity=0.033 Sum_probs=303.0
Q ss_pred hHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHH-HHHHHHHHh
Q 010276 42 KAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVK-YKIASCHFA 120 (514)
Q Consensus 42 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~la~~~~~ 120 (514)
..+.|+.++-.+...|.-..|+...+..+...|. |+++.+. ..-..|..+
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~-----------------------------ps~~s~~Lmasklc~e~ 406 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ-----------------------------PSDISVLLMASKLCIER 406 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccC-----------------------------CCcchHHHHHHHHHHhc
Confidence 3468888899999999989999999988887631 1222233 333455667
Q ss_pred cCCHHHHHHHHhcCCC------CCccHHHHHHHHHHHHhcC-----------ChhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 010276 121 LGETKAAIVEMEGIPS------KARNLQMSLLMAKLYRNSR-----------HNRGAVACYKECLRHCPFFIEAITALAE 183 (514)
Q Consensus 121 ~g~~~~A~~~~~~~~~------~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 183 (514)
.|..++++.+..++.. ..-.+..+..+|.+|..+- ...++++.++++++.+|.|+.+...+
T Consensus 407 l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~l-- 484 (799)
T KOG4162|consen 407 LKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYL-- 484 (799)
T ss_pred hhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHH--
Confidence 8888888888777422 1335777888888876543 24678999999999999998877665
Q ss_pred hccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHh
Q 010276 184 LGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFP-NNIHILLEMAKVDAII 262 (514)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~ 262 (514)
+.-+...++.+.|.+..+++++.++ +++.+|..++.++...
T Consensus 485 --------------------------------------alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~ 526 (799)
T KOG4162|consen 485 --------------------------------------ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQ 526 (799)
T ss_pred --------------------------------------HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence 7778888999999999999999954 6689999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh----------cCh
Q 010276 263 GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER----------KDE 332 (514)
Q Consensus 263 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~ 332 (514)
+++.+|+...+.++...|+|.........+-...++.++++..+...+......+.+...++..-.. .+.
T Consensus 527 kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~ 606 (799)
T KOG4162|consen 527 KRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQP 606 (799)
T ss_pred hhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccc
Confidence 9999999999999999999988888888888889999999999888877655443333333221111 334
Q ss_pred hHHHHHHHHHHHh-------------------cccC-------chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HH
Q 010276 333 RGALSYAEKSIRI-------------------DERH-------IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RS 385 (514)
Q Consensus 333 ~~A~~~~~~~~~~-------------------~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 385 (514)
.+|++...++... .|.. ...|...+..+...+..++|..++.++-.++|.. ..
T Consensus 607 ~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~ 686 (799)
T KOG4162|consen 607 TDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASV 686 (799)
T ss_pred cccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHH
Confidence 4555544443321 1111 1346788999999999999999999999999987 78
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHH--HHHHHHhhCCCChHHHHHHHHHHH
Q 010276 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKK--FYESALRLEPGYLGAALALAELHV 463 (514)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~--~~~~a~~~~~~~~~~~~~la~~~~ 463 (514)
|+..|.++...|+..+|.+.|..++.++|+++.....+|.++... |+..-|.. .+..+++++|.++++|+.+|.++.
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~-G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k 765 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL-GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFK 765 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 99887777 999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhhCCCch
Q 010276 464 IEGRNGDAVSLLERYLKDWADDS 486 (514)
Q Consensus 464 ~~g~~~~A~~~~~~~~~~~~~~~ 486 (514)
+.|+.++|.++|..++++.++++
T Consensus 766 ~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 766 KLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HccchHHHHHHHHHHHhhccCCC
Confidence 99999999999999999998764
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.91 E-value=5.1e-20 Score=165.99 Aligned_cols=429 Identities=16% Similarity=0.142 Sum_probs=324.7
Q ss_pred hhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHh
Q 010276 41 LKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120 (514)
Q Consensus 41 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 120 (514)
+.-..++..+.-.+..++|.+.++..+..++..|. .++..-..|..+..
T Consensus 5 ~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~e-------------------------------HgeslAmkGL~L~~ 53 (700)
T KOG1156|consen 5 PKENALFRRALKCYETKQYKKGLKLIKQILKKFPE-------------------------------HGESLAMKGLTLNC 53 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCc-------------------------------cchhHHhccchhhc
Confidence 34457788888899999999999999999998774 45556667777788
Q ss_pred cCCHHHHHHHHhc-CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccC
Q 010276 121 LGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTP 199 (514)
Q Consensus 121 ~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 199 (514)
+|+.++|...... +...+.+...|..+|.++....+|++|+++|+.++...|+|...+..++-+....+++......-.
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRN 133 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 9999999998887 556688999999999999999999999999999999999999999999988888887766665554
Q ss_pred CcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCc-----HHHHHHHHHHHHHhCChHHHHHH
Q 010276 200 NRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF---PNN-----IHILLEMAKVDAIIGKNDEAILN 271 (514)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~-----~~~~~~la~~~~~~~~~~~A~~~ 271 (514)
..+.. .+..-..++..|..+.-.|++..|..+++...+.. |+. .+.......++...|.+++|.+.
T Consensus 134 ~LLql------~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 134 QLLQL------RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 44422 23333333444888999999999999999887654 332 34566677888888999999888
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHh-hcChhHHH-HHHHHHHHhcccC
Q 010276 272 FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE-RKDERGAL-SYAEKSIRIDERH 349 (514)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~A~-~~~~~~~~~~~~~ 349 (514)
+..--..--+........+.++...+++++|..++...+..+|++...+..+-.++. -.+..+++ ..|...-+..|..
T Consensus 208 L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 208 LLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred HHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 876554444455667778999999999999999999999999999988877766664 23333444 4444443333321
Q ss_pred chh--------------------------------HHHHHHHHHhcCChHHHHHHHHHhH-------hhc----------
Q 010276 350 IPG--------------------------------YIMKGNLLLSMKRPEAAVIAFRGAQ-------ELR---------- 380 (514)
Q Consensus 350 ~~~--------------------------------~~~~~~~~~~~~~~~~A~~~~~~~~-------~~~---------- 380 (514)
... ...+-.+| .+.... ...++.+ ...
T Consensus 288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy---k~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY---KDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred ccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH---hchhHh-HHHHHHHHHHHhhcccccCCCcccccc
Confidence 110 11111111 111111 1222222 111
Q ss_pred ---CCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHH
Q 010276 381 ---PDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAA 455 (514)
Q Consensus 381 ---~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 455 (514)
|.. ..++.++.-+...|+++.|..+++.++...|.-++.+...|+++... |+.++|..++..+.+++-.+..+-
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~-G~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHA-GLLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhc-CChHHHHHHHHHHHhccchhHHHH
Confidence 111 23577899999999999999999999999999999999999999998 999999999999999987766666
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhhCCCc-------h-HHHHH--HHHHHHhccHHHHHHHHHHH
Q 010276 456 LALAELHVIEGRNGDAVSLLERYLKDWADD-------S-LHVKL--AQVFAATNMLQEALSHYEAA 511 (514)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~-~~~~l--~~~~~~~g~~~~A~~~~~~a 511 (514)
..-|....+.++.++|.+.+.+..+...+. + .|+.+ |..|.++|++..|++-|..+
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 678999999999999999998876655321 3 67666 88999999999998877654
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.91 E-value=2.2e-21 Score=187.44 Aligned_cols=244 Identities=11% Similarity=-0.007 Sum_probs=187.2
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh---------CChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChh
Q 010276 264 KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK---------CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDER 333 (514)
Q Consensus 264 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 333 (514)
.+++|+..|+++++.+|+++.++..+|.++... +++++|...++++++.+|+++.++..+|.++.. |+++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 456888888888888888888888888776543 336788888888888888888888888887766 8888
Q ss_pred HHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 010276 334 GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA 412 (514)
Q Consensus 334 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 412 (514)
+|+..++++++.+|+++.+++.+|.++...|++++|+..++++++++|.+ ..+..++.++...|++++|+..+++++..
T Consensus 356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 356 VGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ 435 (553)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888887 34455566677788888888888888876
Q ss_pred C-CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHH
Q 010276 413 M-PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVK 490 (514)
Q Consensus 413 ~-p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~ 490 (514)
. |+++..+..+|.++... |++++|...+.+.....|....+...++..+...|+ +|...+++.++...... ....
T Consensus 436 ~~p~~~~~~~~la~~l~~~-G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~ 512 (553)
T PRK12370 436 HLQDNPILLSMQVMFLSLK-GKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGL 512 (553)
T ss_pred ccccCHHHHHHHHHHHHhC-CCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchH
Confidence 4 67788888888888887 888888888888877778777788888888887773 67776776655443221 2223
Q ss_pred HHHHHHHhccHHHHHHHHHHH
Q 010276 491 LAQVFAATNMLQEALSHYEAA 511 (514)
Q Consensus 491 l~~~~~~~g~~~~A~~~~~~a 511 (514)
...+|.-.|+.+.+..+ +++
T Consensus 513 ~~~~~~~~g~~~~~~~~-~~~ 532 (553)
T PRK12370 513 LPLVLVAHGEAIAEKMW-NKF 532 (553)
T ss_pred HHHHHHHHhhhHHHHHH-HHh
Confidence 67777777777777666 544
No 57
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.91 E-value=6e-22 Score=186.01 Aligned_cols=365 Identities=13% Similarity=0.036 Sum_probs=228.6
Q ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccc-ccc----CChhHHHHHHHHH
Q 010276 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFN-VSA----INENEVKYKIASC 117 (514)
Q Consensus 43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~----~~~~~~~~~la~~ 117 (514)
+.++-.+|..|...-+...|.++|++|.++||.+..+....+..|......+.|..... ... ......+..+|..
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 45777778877777777888888888888888777777777777776666655554431 111 1123334457777
Q ss_pred HHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHh
Q 010276 118 HFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFA 196 (514)
Q Consensus 118 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 196 (514)
|...++...|+..++.. ...|.+...|..+|.+|...|++.-|++.|.++...+|.+.......+.+....+++.+++.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 77777777777777773 44577777777777777777777777777777777777776666666555555555544443
Q ss_pred ccCCcCCCCCCC-cCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHh-----
Q 010276 197 QTPNRSGRAPFD-HLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF--------PNNIHILLEMAKVDAII----- 262 (514)
Q Consensus 197 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~----- 262 (514)
............ .............+..+...|-+.+|...+++.++.. -++.-.|..++......
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~ 731 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEP 731 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcc
Confidence 332221111100 0011122223334455555666666666666655421 11222222222221110
Q ss_pred ------------------CCh------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--------hCChhHHHHHHHHHh
Q 010276 263 ------------------GKN------DEAILNFEKVRSIDPYIMTYMDEYAMLLKV--------KCDYSKLSKLVHDLL 310 (514)
Q Consensus 263 ------------------~~~------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~ 310 (514)
+.. --+.+++-..++.- ..+..|+++|..|++ +.+...|+.++.+++
T Consensus 732 ~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~-~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV 810 (1238)
T KOG1127|consen 732 SIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA-IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV 810 (1238)
T ss_pred cchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh-hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 000 01222222222211 114456777776665 223357888888999
Q ss_pred hcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHH
Q 010276 311 SIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGL 389 (514)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l 389 (514)
+...++...|..+|.+-..|++.-|..+|-+.+...|.....|.++|.++....+++.|...|.++..++|.+ ..|...
T Consensus 811 ~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~ 890 (1238)
T KOG1127|consen 811 SLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGE 890 (1238)
T ss_pred HHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHH
Confidence 8888888899998888433888888889988888889888889999999999999999999999998888887 667777
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 010276 390 VHSYLQFSKVKEALYAARE 408 (514)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~ 408 (514)
+.+....|+.-++...+..
T Consensus 891 Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 891 ALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHhHHHHHHHHHHHHHHHh
Confidence 7777777766666666665
No 58
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.91 E-value=3.2e-20 Score=171.83 Aligned_cols=257 Identities=11% Similarity=0.051 Sum_probs=198.8
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChh
Q 010276 222 AQCCIASNDYKGGLELFAELLQRFPNNIH-ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (514)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (514)
+......|+++.|...+.++.+.+|++.. .....+.++...|++++|...+++..+.+|+++.++..++.++...|+++
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence 55557778888888888888777777643 33344777778888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhcCCCChHHHHHH-HHH--------HhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHH
Q 010276 301 KLSKLVHDLLSIDPSRPEVFVAL-SVL--------WERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVI 371 (514)
Q Consensus 301 ~A~~~~~~~~~~~~~~~~~~~~l-~~~--------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 371 (514)
+|...+.++.+..+.++.....+ ... ....+.+.....++......|+++.+...++..+...|+.++|..
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 88877777777665554432211 011 111333344444555545567789999999999999999999999
Q ss_pred HHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276 372 AFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (514)
Q Consensus 372 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 451 (514)
.++++++..|+.......+.+ ..+++++++..+++.++.+|+++..+..+|.++... +++++|.++|+++++..|++
T Consensus 285 ~L~~~l~~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~-~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 285 IILDGLKRQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH-GEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHHHHHhcCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCH
Confidence 999999966655444334433 459999999999999999999999999999999998 99999999999999999985
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHhhC
Q 010276 452 LGAALALAELHVIEGRNGDAVSLLERYLKDW 482 (514)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (514)
..+..++.++.+.|+.++|..++++++...
T Consensus 362 -~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 362 -YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 556689999999999999999999998764
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.91 E-value=2e-21 Score=187.62 Aligned_cols=262 Identities=14% Similarity=0.030 Sum_probs=224.3
Q ss_pred hHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---------CChHHHHHHHHHHHhhCCCCHH
Q 010276 217 HRYVEAQCCIA---SNDYKGGLELFAELLQRFPNNIHILLEMAKVDAII---------GKNDEAILNFEKVRSIDPYIMT 284 (514)
Q Consensus 217 ~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~ 284 (514)
..+.+|..... .+++++|+..|+++++.+|+++.++..+|.++... +++++|...++++++++|+++.
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~ 339 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ 339 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence 35566765543 34578999999999999999999999999887744 3479999999999999999999
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhc
Q 010276 285 YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM 363 (514)
Q Consensus 285 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (514)
++..+|.++...|++++|+..++++++.+|+++.+++.+|.++.. |++++|+..++++++.+|.++..+..++.+++..
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~ 419 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH 419 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998888 9999999999999999999988777777778889
Q ss_pred CChHHHHHHHHHhHhhc-CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 010276 364 KRPEAAVIAFRGAQELR-PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFY 441 (514)
Q Consensus 364 ~~~~~A~~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~ 441 (514)
|++++|+..+++++... |+. ..+..+|.++...|++++|...+.++....|.+...+..++..+... | ++|...+
T Consensus 420 g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~a~~~l 496 (553)
T PRK12370 420 TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN-S--ERALPTI 496 (553)
T ss_pred cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc-H--HHHHHHH
Confidence 99999999999999875 555 56889999999999999999999999999999899999999999887 6 4777777
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhC
Q 010276 442 ESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW 482 (514)
Q Consensus 442 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (514)
++.++.....+.-...+..++.-.|+.+.+..+ +++.+..
T Consensus 497 ~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 497 REFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 776664333332233378888888998888887 7665543
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.90 E-value=1.1e-22 Score=168.01 Aligned_cols=248 Identities=16% Similarity=0.166 Sum_probs=201.2
Q ss_pred CchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 010276 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (514)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (514)
...+|.-....|.||++.|.+.+|...++..++..| .++.+..++.+|.+..++..|+..+...++..|.+...+...+
T Consensus 219 ~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~A 297 (478)
T KOG1129|consen 219 CTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQA 297 (478)
T ss_pred chHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhH
Confidence 345666666778899999999999999988888776 5688888889999999999999999999988898888888888
Q ss_pred HHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHH
Q 010276 291 MLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAA 369 (514)
Q Consensus 291 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 369 (514)
.++..+++.++|.++|+.+++.+|.+.++.-.++.-|.- ++.+-|+.+|++.++....+++.+.++|.+++..++++-+
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence 899888988888888888888888888887777765555 7788888888888888888888888888888888888888
Q ss_pred HHHHHHhHhhcC--Ch--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010276 370 VIAFRGAQELRP--DL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESAL 445 (514)
Q Consensus 370 ~~~~~~~~~~~~--~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~ 445 (514)
+..|++++.... +. ++|+++|.+....|++.-|..+|+-++..+|++..++.++|.+-.+. |+.++|..++..+-
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~-G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS-GDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc-CchHHHHHHHHHhh
Confidence 888888877643 32 56888888888888888888888888888888888888888777776 88888888888777
Q ss_pred hhCCCChHHHHHHHH
Q 010276 446 RLEPGYLGAALALAE 460 (514)
Q Consensus 446 ~~~~~~~~~~~~la~ 460 (514)
...|+-.+..++++.
T Consensus 457 s~~P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 457 SVMPDMAEVTTNLQF 471 (478)
T ss_pred hhCccccccccceeE
Confidence 777776666555543
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.90 E-value=2.8e-20 Score=153.85 Aligned_cols=267 Identities=15% Similarity=0.087 Sum_probs=231.9
Q ss_pred HHHHhcCHHHHHHHHHHHHHh---CCC-------cHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 010276 224 CCIASNDYKGGLELFAELLQR---FPN-------NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLL 293 (514)
Q Consensus 224 ~~~~~~~~~~A~~~~~~~~~~---~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 293 (514)
+++..++...|-......+.. .|. +......+|.||.++|.+.+|.+.++..++..| .++.+..++.+|
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY 266 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVY 266 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHH
Confidence 455667777776666555542 121 123445789999999999999999999998766 577889999999
Q ss_pred HHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHH
Q 010276 294 KVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIA 372 (514)
Q Consensus 294 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 372 (514)
.+..++..|+..+.+.++..|.+...+...+.++.. ++.++|.++|+.+++.+|.+.++.-.+|.-|+..++++-|+.+
T Consensus 267 ~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 267 QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH
Confidence 999999999999999999999999999999999888 9999999999999999999999999999999999999999999
Q ss_pred HHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 010276 373 FRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMP---QSAKALKLVGDVHASNASGREKAKKFYESALRLE 448 (514)
Q Consensus 373 ~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~ 448 (514)
|++.+++.-.+ +.+.++|.|++..++++-++..|++++.... .-.++|+++|.+.... |++..|..+|+-++..+
T Consensus 347 YRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~i-GD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 347 YRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTI-GDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEec-cchHHHHHHHHHHhccC
Confidence 99999998776 7899999999999999999999999998643 2378999999999998 99999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-hHHHHHH
Q 010276 449 PGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLA 492 (514)
Q Consensus 449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~ 492 (514)
|++.+++.+||.+-.+.|+.++|..++..+-...|+- +..++++
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 9999999999999999999999999999999998875 3444444
No 62
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.89 E-value=2.3e-20 Score=175.60 Aligned_cols=384 Identities=14% Similarity=0.097 Sum_probs=272.7
Q ss_pred cCCHHHHHHHHhc-CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccC
Q 010276 121 LGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTP 199 (514)
Q Consensus 121 ~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 199 (514)
.++...|+..|-+ +...+.-..++..+|.+|...-+...|.++|+++.+++|.+.+++...+..+....+++.++....
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3446677766555 566688889999999999999999999999999999999999999999999999999888877644
Q ss_pred CcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC
Q 010276 200 NRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID 279 (514)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 279 (514)
......+. ......|.. +|..+...++..+|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..++
T Consensus 551 ~~~qka~a-~~~k~nW~~---rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 551 RAAQKAPA-FACKENWVQ---RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHhhhchH-HHHHhhhhh---ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 44333321 122333433 68899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh--------cChhHHHHHHHHHHHh------
Q 010276 280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER--------KDERGALSYAEKSIRI------ 345 (514)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~A~~~~~~~~~~------ 345 (514)
|.+..+.+..+.+....|++.+|+..+...+............++.++.+ |=..+|.+++++.++.
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988887655444333333333322 4444566666555442
Q ss_pred -c-ccCchhHHHHHHHHHh-----------------------cCCh------HHHHHHHHHhHhhcCChHHHHHHHHHHH
Q 010276 346 -D-ERHIPGYIMKGNLLLS-----------------------MKRP------EAAVIAFRGAQELRPDLRSYQGLVHSYL 394 (514)
Q Consensus 346 -~-~~~~~~~~~~~~~~~~-----------------------~~~~------~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 394 (514)
. .++...|..+|....- .+.. --+.+++-..++.......|+++|..|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 1 1222222222221110 0100 1122223222222222234666666665
Q ss_pred h--------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 010276 395 Q--------FSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG 466 (514)
Q Consensus 395 ~--------~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 466 (514)
+ ..+...|+.++.++++...++...|..+|.+ ... |++.-|..+|-+.+...|.....|.++|.++.+..
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~-gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGI-GNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hcc-chhhhhhhhhhhhhhccccchhheeccceeEEecc
Confidence 5 2233467777777777777777777777776 333 67777777777777777777777777777777777
Q ss_pred ChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHH
Q 010276 467 RNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEA 510 (514)
Q Consensus 467 ~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 510 (514)
+++-|...|.++..+.|.+. .|...+.+-...|+.-++...|..
T Consensus 865 d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 77777777777777777764 676777777777777666666654
No 63
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1e-21 Score=174.92 Aligned_cols=230 Identities=14% Similarity=0.089 Sum_probs=172.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 010276 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (514)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (514)
|..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhcCCCChHHHHHHHH--------HHhhcChhHHHHHHHHHHHhcc--cCchhHHHHHHHHHhcCChHH
Q 010276 299 YSKLSKLVHDLLSIDPSRPEVFVALSV--------LWERKDERGALSYAEKSIRIDE--RHIPGYIMKGNLLLSMKRPEA 368 (514)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 368 (514)
-.+|..++.+.+...|........--. ......+..-.+.|-.+....| .++++...+|.+|...|+|+.
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999998876653221110000 0000112233445555555555 566677777777777777777
Q ss_pred HHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 010276 369 AVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL 447 (514)
Q Consensus 369 A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~ 447 (514)
|+.+|+.++...|++ ..|+.||-.+....+.++|+..|++++++.|....+++++|..+..+ |.|++|.++|-.|+.+
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl-G~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL-GAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh-hhHHHHHHHHHHHHHh
Confidence 777777777777776 56777777777777777777777777777777777777777777776 7777777777777665
Q ss_pred CC
Q 010276 448 EP 449 (514)
Q Consensus 448 ~~ 449 (514)
.+
T Consensus 528 q~ 529 (579)
T KOG1125|consen 528 QR 529 (579)
T ss_pred hh
Confidence 43
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.89 E-value=3.5e-20 Score=164.20 Aligned_cols=230 Identities=12% Similarity=0.064 Sum_probs=138.4
Q ss_pred cCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHH
Q 010276 229 NDYKGGLELFAELLQRFP----NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSK 304 (514)
Q Consensus 229 ~~~~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 304 (514)
+..+.++..+.+++...| ..+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 566777777777775333 2255677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh
Q 010276 305 LVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL 383 (514)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 383 (514)
.|+++++++|++..++..+|.++.. |++++|+..++++++.+|+++.... ...+....+++++|+..+.+.....+..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 7777777777777777777776655 7777777777777777776653211 1122334556677777775554332221
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH-------HhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC-CChHHH
Q 010276 384 RSYQGLVHSYLQFSKVKEALYAAREA-------MKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEP-GYLGAA 455 (514)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~ 455 (514)
.|. .+.+....|+..++ ..++.+ .+..|..+.+|+++|.++... |++++|+.+|+++++.+| +..+..
T Consensus 199 -~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~-g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 199 -QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSL-GDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred -ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCchHHHHH
Confidence 111 23333344444322 122222 233444555666666666665 666666666666666664 444444
Q ss_pred HHHHHHHH
Q 010276 456 LALAELHV 463 (514)
Q Consensus 456 ~~la~~~~ 463 (514)
+.+..+..
T Consensus 275 ~~~~e~~~ 282 (296)
T PRK11189 275 YALLELAL 282 (296)
T ss_pred HHHHHHHH
Confidence 44444433
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.88 E-value=6.4e-19 Score=158.98 Aligned_cols=246 Identities=14% Similarity=0.138 Sum_probs=201.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhcc
Q 010276 108 NEVKYKIASCHFALGETKAAIVEMEGIPSK-ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGA 186 (514)
Q Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 186 (514)
...++..+.-.+..++|...+..++.|... |.+++.+.+.|..+...|+.++|....+.+++.+|.+...|..+
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~----- 81 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVL----- 81 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHH-----
Confidence 345566666667899999999999997555 99999999999999999999999999999999999999888776
Q ss_pred CcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChH
Q 010276 187 TPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKND 266 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~ 266 (514)
|.++....+|++|+.+|+.++...|+|..++.-++....++++++
T Consensus 82 -----------------------------------gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 82 -----------------------------------GLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred -----------------------------------HHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence 888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcC---CCChHHHHHHHHHHh-----h-cChhHHHH
Q 010276 267 EAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSID---PSRPEVFVALSVLWE-----R-KDERGALS 337 (514)
Q Consensus 267 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~-----~-~~~~~A~~ 337 (514)
.....-.+.++..|.....|...+..+...|++..|..+.+...+.. |+....-.....++. . |.+++|++
T Consensus 127 ~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 127 GYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 99999999999999999999999999999999999999988777654 333222222222222 2 77777777
Q ss_pred HHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHH
Q 010276 338 YAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSY 393 (514)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~ 393 (514)
.+..--..--+........+.++.+++++++|...|...+..+|++ ..+..+-.++
T Consensus 207 ~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 207 HLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKAL 263 (700)
T ss_pred HHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHH
Confidence 6655433333334455678899999999999999999999999998 4344444444
No 66
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=4.7e-21 Score=170.68 Aligned_cols=254 Identities=20% Similarity=0.166 Sum_probs=216.8
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cC
Q 010276 253 LEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KD 331 (514)
Q Consensus 253 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 331 (514)
+..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..|+..|.. |.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999 66
Q ss_pred hhHHHHHHHHHHHhcccCchhHHH-------HHHHHHhcCChHHHHHHHHHhHhhcCC---hHHHHHHHHHHHhcCCHHH
Q 010276 332 ERGALSYAEKSIRIDERHIPGYIM-------KGNLLLSMKRPEAAVIAFRGAQELRPD---LRSYQGLVHSYLQFSKVKE 401 (514)
Q Consensus 332 ~~~A~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 401 (514)
-.+|++++.+-+...|........ ...-......+..-.+.|-.+....|. .++...||.+|.-.|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 679999999999887753221110 000111112233445666666666663 3789999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276 402 ALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD 481 (514)
Q Consensus 402 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (514)
|+.+|+.++...|++...|..+|..+..- .+.++|+..|.+|+++.|+...++++||..+..+|.|++|.++|-.++.+
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~-~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANG-NRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCC-cccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999987 89999999999999999999999999999999999999999999999998
Q ss_pred CCCc-----------hHHHHHHHHHHHhccHHHHHHH
Q 010276 482 WADD-----------SLHVKLAQVFAATNMLQEALSH 507 (514)
Q Consensus 482 ~~~~-----------~~~~~l~~~~~~~g~~~~A~~~ 507 (514)
.+.. .+|..|-.++..+++.+-+...
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 7541 3788887888888887755443
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.88 E-value=3.5e-20 Score=164.13 Aligned_cols=231 Identities=11% Similarity=0.011 Sum_probs=181.6
Q ss_pred CChHHHHHHHHHHHhhCC---C-CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHH
Q 010276 263 GKNDEAILNFEKVRSIDP---Y-IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALS 337 (514)
Q Consensus 263 ~~~~~A~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~ 337 (514)
+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++.. |++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 467788888888886433 3 367799999999999999999999999999999999999999998888 99999999
Q ss_pred HHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 010276 338 YAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA 417 (514)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 417 (514)
.|+++++++|++..++..+|.++...|++++|+..++++++.+|++........+....+++++|+..+.+.....+.+.
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~ 199 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ 199 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc
Confidence 99999999999999999999999999999999999999999999885322222334567889999999988775543322
Q ss_pred HHHHHHHHHHHhcCCChHHH--HHHHH----HHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc--hHHH
Q 010276 418 KALKLVGDVHASNASGREKA--KKFYE----SALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD--SLHV 489 (514)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A--~~~~~----~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~ 489 (514)
|. .+.+.... |+..++ ...+. ...++.|..+++|+.+|.++...|++++|+.+|+++++.+|.+ +..+
T Consensus 200 --~~-~~~~~~~l-g~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 200 --WG-WNIVEFYL-GKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred --cH-HHHHHHHc-cCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 22 34444455 665433 32222 2335677788999999999999999999999999999999755 2444
Q ss_pred HHHHHHHH
Q 010276 490 KLAQVFAA 497 (514)
Q Consensus 490 ~l~~~~~~ 497 (514)
.+..+...
T Consensus 276 ~~~e~~~~ 283 (296)
T PRK11189 276 ALLELALL 283 (296)
T ss_pred HHHHHHHH
Confidence 44444333
No 68
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.1e-19 Score=155.02 Aligned_cols=303 Identities=17% Similarity=0.153 Sum_probs=200.7
Q ss_pred ChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHH
Q 010276 38 SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASC 117 (514)
Q Consensus 38 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~ 117 (514)
.+...++-....|..++++.+|.+|+..|..|++.+|++...+. ..+.+
T Consensus 44 ~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~-------------------------------nRAa~ 92 (486)
T KOG0550|consen 44 EAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYS-------------------------------NRAAT 92 (486)
T ss_pred hHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhc-------------------------------hhHHH
Confidence 45566788899999999999999999999999999996654444 44555
Q ss_pred HHhcCCHHHHHHHHhc-CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHh
Q 010276 118 HFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFA 196 (514)
Q Consensus 118 ~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 196 (514)
++..|++++|.-..++ +...+..+......++++...++..+|...|+. ..|. .+. .
T Consensus 93 ~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~---~~~~--~~a-----------------n 150 (486)
T KOG0550|consen 93 LMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKS---KQAY--KAA-----------------N 150 (486)
T ss_pred HHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhh---hhhh--HHh-----------------h
Confidence 5667777777776655 444566677777888888888888777777761 1111 000 1
Q ss_pred ccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 010276 197 QTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVR 276 (514)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 276 (514)
.+...-...+.....|.-....++.+.++...|++++|.+.--.+++.++.+.++++..|.+++..++.+.|+.+|++++
T Consensus 151 al~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal 230 (486)
T KOG0550|consen 151 ALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQAL 230 (486)
T ss_pred hhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhh
Confidence 11111111222222344455567789999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHH-HhhcChhHHHHHHHHHHHhcccCc----h
Q 010276 277 SIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVL-WERKDERGALSYAEKSIRIDERHI----P 351 (514)
Q Consensus 277 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~A~~~~~~~~~~~~~~~----~ 351 (514)
.++|+...+-... ..|.--..+..-|+- +..|++.+|.++|..++.++|++. .
T Consensus 231 ~ldpdh~~sk~~~----------------------~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 231 RLDPDHQKSKSAS----------------------MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred ccChhhhhHHhHh----------------------hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 9999864321100 011112223333332 222555555555555555555543 2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 010276 352 GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ 415 (514)
Q Consensus 352 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 415 (514)
.|.+++.+..++|+..+|+...+.+++++|.. .++...|.++...++|++|++.++++++...+
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 35556666666666666666666666666665 66666666666666666666666666655443
No 69
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.87 E-value=2.2e-18 Score=142.63 Aligned_cols=292 Identities=19% Similarity=0.247 Sum_probs=234.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHH
Q 010276 145 LLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQC 224 (514)
Q Consensus 145 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (514)
+..|.-+.-..+.++|++.|..+++.+|...++...| |..
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltL----------------------------------------GnL 78 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTL----------------------------------------GNL 78 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHH----------------------------------------HHH
Confidence 4456666667888999999999999888888877666 777
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh
Q 010276 225 CIASNDYKGGLELFAELLQRFPNN-----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (514)
Q Consensus 225 ~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (514)
+.+.|..+.|+.+.+.+++. |+- ..+...+|.-|+..|-+|.|...|....+....-..++..+..+|....+|
T Consensus 79 fRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW 157 (389)
T COG2956 79 FRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREW 157 (389)
T ss_pred HHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHH
Confidence 78888889999888877653 332 457788899999999999999999988876666677888999999999999
Q ss_pred hHHHHHHHHHhhcCCCCh-----HHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHH
Q 010276 300 SKLSKLVHDLLSIDPSRP-----EVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF 373 (514)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 373 (514)
++|++..++..+..+..- ..+..++..+.. .+.+.|+..+.++++.+|++..+-..+|.+....|+|+.|++.+
T Consensus 158 ~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~ 237 (389)
T COG2956 158 EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEAL 237 (389)
T ss_pred HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHH
Confidence 999999999988877763 345556655554 88899999999999999999999999999999999999999999
Q ss_pred HHhHhhcCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276 374 RGAQELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (514)
Q Consensus 374 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 451 (514)
+.+++.+|+. .+...+..+|...|+.++....+.++.+..++ +.+...++..-... .-.+.|..++.+-+...|+.
T Consensus 238 e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~-~G~~~Aq~~l~~Ql~r~Pt~ 315 (389)
T COG2956 238 ERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQ-EGIDAAQAYLTRQLRRKPTM 315 (389)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHh-hChHHHHHHHHHHHhhCCcH
Confidence 9999999998 67888999999999999999999999998887 55566666666666 67788888888889988874
Q ss_pred hHHHHHHHHHHHH---cCChhHHHHHHHHHHh
Q 010276 452 LGAALALAELHVI---EGRNGDAVSLLERYLK 480 (514)
Q Consensus 452 ~~~~~~la~~~~~---~g~~~~A~~~~~~~~~ 480 (514)
...+.+...... .|...+.+..+++++.
T Consensus 316 -~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 316 -RGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred -HHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 444444444332 2445556666665543
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.86 E-value=1.1e-17 Score=140.26 Aligned_cols=412 Identities=15% Similarity=0.151 Sum_probs=273.6
Q ss_pred HHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhh
Q 010276 8 ITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSS 87 (514)
Q Consensus 8 ~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 87 (514)
+..++.+.+|..|+.+.++-+. ....+.-..-.++|.+++..|+|++|...|+-+...+.
T Consensus 29 Ledfls~rDytGAislLefk~~-------~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~------------- 88 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLN-------LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDD------------- 88 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhc-------cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCC-------------
Confidence 4566777888888877665442 12223334557788888888888888888887776421
Q ss_pred hhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010276 88 LSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC 167 (514)
Q Consensus 88 ~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 167 (514)
.+.++...+|-|++-+|.|.+|.++..+.+..|-..+.++.++ .+.|+-++ +-.|...
T Consensus 89 ------------------~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhla---hklndEk~-~~~fh~~ 146 (557)
T KOG3785|consen 89 ------------------APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLA---HKLNDEKR-ILTFHSS 146 (557)
T ss_pred ------------------CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHH---HHhCcHHH-HHHHHHH
Confidence 3456677778888888888888888777666555555554444 33344222 2223332
Q ss_pred HhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 010276 168 LRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPN 247 (514)
Q Consensus 168 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~ 247 (514)
+.... + ..+-+|.+.+..-.|.+|+++|.+++..+|+
T Consensus 147 LqD~~---E----------------------------------------dqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 147 LQDTL---E----------------------------------------DQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HhhhH---H----------------------------------------HHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 22111 1 1122366666777888999999999988888
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHH------------------
Q 010276 248 NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL------------------ 309 (514)
Q Consensus 248 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------------------ 309 (514)
....-..+|.||+++.-++-+.+.+.--++..|+++.+....+...++.=+-..|..-...+
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHN 263 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHN 263 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcC
Confidence 88888888999999999998988888888888888887777776665532211111111111
Q ss_pred ----------hhcCCC----ChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHH
Q 010276 310 ----------LSIDPS----RPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFR 374 (514)
Q Consensus 310 ----------~~~~~~----~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 374 (514)
++.-|. -|++..++...|.. ++..+|..... ..+|..|.-+...|.++...|+--...+.++
T Consensus 264 LVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 264 LVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred eEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 111111 25666666666655 88888877654 4678888888888888888887554444444
Q ss_pred HhHh---hcCC------h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 010276 375 GAQE---LRPD------L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESA 444 (514)
Q Consensus 375 ~~~~---~~~~------~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 444 (514)
-+-+ +-.. . +....++.+++-..++++.+.++...-...-++....++++..+... |++.+|.+.|-+.
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~at-gny~eaEelf~~i 419 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLAT-GNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHh-cChHHHHHHHhhh
Confidence 3322 2111 1 34667788888888899999888888888888888889999999988 9999999998776
Q ss_pred HhhCCCC-hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc--hHHHHHHHHHHHhccHHHHHHHHHH
Q 010276 445 LRLEPGY-LGAALALAELHVIEGRNGDAVSLLERYLKDWADD--SLHVKLAQVFAATNMLQEALSHYEA 510 (514)
Q Consensus 445 ~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 510 (514)
-..+-.+ ......|++||...|+++-|.+.+-+. ..|.. ..+..++....+.+++--|-+.|..
T Consensus 420 s~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~ 486 (557)
T KOG3785|consen 420 SGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDE 486 (557)
T ss_pred cChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 5444222 234456899999999999988877542 22332 2555567777777777666666553
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.86 E-value=5.3e-19 Score=139.60 Aligned_cols=200 Identities=17% Similarity=0.063 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-
Q 010276 251 ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER- 329 (514)
Q Consensus 251 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~- 329 (514)
+...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++++.|++.+++.+.|..+..
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3444444444444444444444444444444444444444444444444444444444444444444333333332222
Q ss_pred cChhHHHHHHHHHHHh--cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHH
Q 010276 330 KDERGALSYAEKSIRI--DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAA 406 (514)
Q Consensus 330 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~ 406 (514)
|++++|...|++++.. .|..+..+.++|.|..+.|+++.|...|+++++.+|+. .+...++..++..|++..|..++
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 3333333333333321 22223334444444444444444444444444444443 33444444444444444444444
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276 407 REAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (514)
Q Consensus 407 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 451 (514)
++.....+-....+.....+-... |+.+.+-++=.+..+..|..
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~-gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRL-GDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCc
Confidence 444433333333333333333333 44444444333333344433
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.86 E-value=4e-19 Score=140.27 Aligned_cols=202 Identities=16% Similarity=0.115 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHH
Q 010276 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLL 361 (514)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (514)
..+...+|.-|...|++..|..-++++++.+|++..+|..++.+|.. |+.+.|.+.|++++.++|++.+++++.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 35788899999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHH
Q 010276 362 SMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKA 437 (514)
Q Consensus 362 ~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A 437 (514)
.+|++++|...|++++.. |.. .++.++|.|..+.|+++.|..+|+++++.+|+.+.....++..+... |++..|
T Consensus 115 ~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~-~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKA-GDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhc-ccchHH
Confidence 999999999999999863 432 67999999999999999999999999999999999999999999998 999999
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276 438 KKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS 486 (514)
Q Consensus 438 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 486 (514)
..++++.....+-..+.+....++-...|+-+.|-++=.+.....|.+.
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 9999998888777788888888888999999999999888888888874
No 73
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=8.2e-18 Score=139.27 Aligned_cols=290 Identities=17% Similarity=0.181 Sum_probs=249.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHH
Q 010276 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI-----MTYMDEYAML 292 (514)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~ 292 (514)
-|..|.-++-.++.++|++.|..+++.+|...++...+|..+.+.|..+.|+..-+..++. |+. ..+...+|.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHH
Confidence 4677888889999999999999999999999999999999999999999999998877764 443 4578899999
Q ss_pred HHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCc-----hhHHHHHHHHHhcCCh
Q 010276 293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI-----PGYIMKGNLLLSMKRP 366 (514)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 366 (514)
|...|-++.|..+|..+.+...--..+...+..+|.. .++++|++.-++..++.+... ..+..++..+....+.
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 9999999999999999988766677888888888888 999999999999999887653 3466788888888999
Q ss_pred HHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 010276 367 EAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS-AKALKLVGDVHASNASGREKAKKFYESA 444 (514)
Q Consensus 367 ~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~a 444 (514)
+.|...+.++++.+|+. .+-..+|.+....|++..|++.++.+++.+|+. +.+...+..+|... |+.++.+..+.++
T Consensus 197 d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l-g~~~~~~~fL~~~ 275 (389)
T COG2956 197 DRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL-GKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHH
Confidence 99999999999999998 889999999999999999999999999999986 67788899999999 9999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHh---ccHHHHHHHHHH
Q 010276 445 LRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAAT---NMLQEALSHYEA 510 (514)
Q Consensus 445 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~ 510 (514)
.+..++ +.+-..++.+-....-.+.|..++.+-+...|+-...+.+-...... |...+.+..++.
T Consensus 276 ~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~ 343 (389)
T COG2956 276 METNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRD 343 (389)
T ss_pred HHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHH
Confidence 998876 56777788888888888999999999999999987666655544432 344555544444
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.86 E-value=5.5e-19 Score=153.64 Aligned_cols=199 Identities=17% Similarity=0.086 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHh
Q 010276 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (514)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (514)
+..+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|.+.+++++...|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---------- 100 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD---------- 100 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----------
Confidence 4455555555555555555555555555555555555555555555555555555555555444444444
Q ss_pred hcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhc--CCh-HHHHHHHHHHHhcCCHHHHHHH
Q 010276 329 RKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR--PDL-RSYQGLVHSYLQFSKVKEALYA 405 (514)
Q Consensus 329 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~ 405 (514)
.+..+|.++...|++++|+..+++++... |.. ..+..+|.++...|++++|...
T Consensus 101 -----------------------~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 101 -----------------------VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred -----------------------HHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444444444445555555554444322 111 3445555556666666666666
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276 406 AREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD 481 (514)
Q Consensus 406 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (514)
+.+++..+|+++..+..+|.++... |++++|...+++++...|.++..+..++.++...|+.++|..+.+.+...
T Consensus 158 ~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQIDPQRPESLLELAELYYLR-GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6666666665555666666666665 66666666666666555555555555666666666666666555554443
No 75
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5e-20 Score=157.17 Aligned_cols=267 Identities=16% Similarity=0.126 Sum_probs=233.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 010276 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (514)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (514)
...+..++...+|.+|+..+..+++..|++...|...+.+++..|++++|....+..++++|.........+.++...++
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHH
Confidence 44577888999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhHHHHHHHHHh------------hcCCCC------hHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHH
Q 010276 299 YSKLSKLVHDLL------------SIDPSR------PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNL 359 (514)
Q Consensus 299 ~~~A~~~~~~~~------------~~~~~~------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 359 (514)
..+|...++..- .+.|.+ ......-+.++.. +++++|...--..+++++.+.++++..|.+
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~ 212 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLC 212 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccc
Confidence 877775554211 111111 1222333445555 999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHhHhhcCCh-H------------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHH
Q 010276 360 LLSMKRPEAAVIAFRGAQELRPDL-R------------SYQGLVHSYLQFSKVKEALYAAREAMKAMPQS----AKALKL 422 (514)
Q Consensus 360 ~~~~~~~~~A~~~~~~~~~~~~~~-~------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~ 422 (514)
++..++.+.|+..|++++.++|+. . .|..-|.-.++.|++.+|.+.|..++.++|++ +..+.+
T Consensus 213 ~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n 292 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN 292 (486)
T ss_pred cccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence 999999999999999999999986 2 36677889999999999999999999999986 567889
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276 423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS 486 (514)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 486 (514)
++.+...+ |+..+|+.....+++++|....++...|.++..++++++|++.++++++...+..
T Consensus 293 ra~v~~rL-grl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e 355 (486)
T KOG0550|consen 293 RALVNIRL-GRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCE 355 (486)
T ss_pred hHhhhccc-CCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 99999999 9999999999999999999999999999999999999999999999999887643
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.85 E-value=8.9e-19 Score=152.35 Aligned_cols=198 Identities=14% Similarity=0.099 Sum_probs=140.5
Q ss_pred hhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 010276 213 SRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAML 292 (514)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 292 (514)
.....++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+...+..++.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 34556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCChhHHHHHHHHHhhcC--CCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHH
Q 010276 293 LKVKCDYSKLSKLVHDLLSID--PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAA 369 (514)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 369 (514)
+...|++++|...+++++... +..+..+..+|.++.. |++++|...+.+++..+|.++..+..+|.++...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999988743 2334444445544444 5555555555555555555544555555555555555555
Q ss_pred HHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010276 370 VIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAM 410 (514)
Q Consensus 370 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (514)
...+++++...|.. ..+..++.++...|+.++|..+.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555554443333 333344444444444444444444433
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1e-16 Score=143.42 Aligned_cols=448 Identities=14% Similarity=0.111 Sum_probs=263.0
Q ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccC--ChhHHHHHHHHHHHhc
Q 010276 44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAI--NENEVKYKIASCHFAL 121 (514)
Q Consensus 44 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~la~~~~~~ 121 (514)
+.++.--+.+...|+|++|.+...+.+...|++.++...-..+.++.+.+++|......... ......+..|.|.+++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 45666667788999999999999999999999999888777778888888888854432211 1112226999999999
Q ss_pred CCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCc
Q 010276 122 GETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNR 201 (514)
Q Consensus 122 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 201 (514)
+..++|+..++.+ .+.+.....+.|++++++|+|++|...|+..++.+-++.+......-+...........+.
T Consensus 93 nk~Dealk~~~~~--~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~---- 166 (652)
T KOG2376|consen 93 NKLDEALKTLKGL--DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS---- 166 (652)
T ss_pred ccHHHHHHHHhcc--cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh----
Confidence 9999999999944 4556778899999999999999999999999988776655544332111100000001111
Q ss_pred CCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCc-------HHHHHHHHHHHHHhCChH
Q 010276 202 SGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR--------FPNN-------IHILLEMAKVDAIIGKND 266 (514)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~-------~~~~~~la~~~~~~~~~~ 266 (514)
.+ ....+.+...|+.|.++...|+|.+|++.++++++. +.+. ..+...++.++..+|+.+
T Consensus 167 ---v~--~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 167 ---VP--EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred ---cc--CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 11 112446777899999999999999999999999432 1111 246778999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHh----CChh-HHHHHHHHHhhcCCC----------ChHHHHHHHHHHhh-c
Q 010276 267 EAILNFEKVRSIDPYIMTYMDEYAMLLKVK----CDYS-KLSKLVHDLLSIDPS----------RPEVFVALSVLWER-K 330 (514)
Q Consensus 267 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~-~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~-~ 330 (514)
+|...|...++.+|.+........+-+... .-++ .++..++......++ -..++.+.+.+... +
T Consensus 242 ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn 321 (652)
T KOG2376|consen 242 EASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN 321 (652)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999998887743322222111111 1111 111111111111111 01122222322222 3
Q ss_pred ChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh--HHHHHHHHHHHhcCCHHHHHHHHH-
Q 010276 331 DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL--RSYQGLVHSYLQFSKVKEALYAAR- 407 (514)
Q Consensus 331 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~- 407 (514)
.-+.+.+...+.-...|....-.............+..|...+....+..|.. .+...++.+.+.+|+++.|++.+.
T Consensus 322 k~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 322 KMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred hHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 33333333332222222222212222223333335666677776666666665 345566666677777777777666
Q ss_pred -------HHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh-------hCCCChHHHHHHHHHHHHcCChhHHHH
Q 010276 408 -------EAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR-------LEPGYLGAALALAELHVIEGRNGDAVS 473 (514)
Q Consensus 408 -------~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~ 473 (514)
...+. ...|.+...+-..+... ++.+.|...+.+++. -.+.....+...+.+-.+.|+-++|..
T Consensus 402 ~~~~~~ss~~~~-~~~P~~V~aiv~l~~~~-~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 402 FLESWKSSILEA-KHLPGTVGAIVALYYKI-KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred Hhhhhhhhhhhh-ccChhHHHHHHHHHHhc-cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 22222 12233333333333433 444444444444433 222223345556666666677777777
Q ss_pred HHHHHHhhCCCc-hHHHHHHHHHHHhccHHHHH
Q 010276 474 LLERYLKDWADD-SLHVKLAQVFAATNMLQEAL 505 (514)
Q Consensus 474 ~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 505 (514)
.+++.++.+|++ ++...+...|... +.+.|.
T Consensus 480 ~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 480 LLEELVKFNPNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHH
Confidence 777777766665 3555555554433 234443
No 78
>PLN02789 farnesyltranstransferase
Probab=99.85 E-value=9.8e-19 Score=153.88 Aligned_cols=222 Identities=11% Similarity=0.054 Sum_probs=160.9
Q ss_pred hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC-ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cC--hhHHHH
Q 010276 262 IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC-DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KD--ERGALS 337 (514)
Q Consensus 262 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~--~~~A~~ 337 (514)
.+++++|+..+.++++++|.+..+|...+.++...| ++++++..+.+++..+|++..+|...+.++.. ++ .++++.
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 456667777777777777777777777777777776 46777777777777777777777777766655 43 256677
Q ss_pred HHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhc---CCH----HHHHHHHHHH
Q 010276 338 YAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF---SKV----KEALYAAREA 409 (514)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~---~~~----~~A~~~~~~~ 409 (514)
+++++++.+|++..+|..++.++...|+++++++.+.++++.+|.+ .+|...+.+.... |.+ ++++.+..++
T Consensus 130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~a 209 (320)
T PLN02789 130 FTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDA 209 (320)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence 7777888888888888888888877888888888888888887776 6777777776654 222 4677777788
Q ss_pred HhhCCCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC------------------Ch
Q 010276 410 MKAMPQSAKALKLVGDVHASNA---SGREKAKKFYESALRLEPGYLGAALALAELHVIEG------------------RN 468 (514)
Q Consensus 410 ~~~~p~~~~~~~~l~~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g------------------~~ 468 (514)
+..+|++..+|..++.++.... +...+|+..+.+++..+|.++.++..|+.++.... ..
T Consensus 210 I~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (320)
T PLN02789 210 ILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDS 289 (320)
T ss_pred HHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccH
Confidence 8888888888888888887620 44566888888888888888888888888887532 23
Q ss_pred hHHHHHHHHHHhhCC
Q 010276 469 GDAVSLLERYLKDWA 483 (514)
Q Consensus 469 ~~A~~~~~~~~~~~~ 483 (514)
++|..+++..-+.+|
T Consensus 290 ~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 290 TLAQAVCSELEVADP 304 (320)
T ss_pred HHHHHHHHHHHhhCc
Confidence 567777777644444
No 79
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=2.9e-16 Score=136.81 Aligned_cols=424 Identities=14% Similarity=0.063 Sum_probs=301.4
Q ss_pred hhhhhhhhhhccccCCCCccc---ccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcC
Q 010276 80 NSTSSRSSLSTSNRSSSPNSF---NVSAINENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSR 155 (514)
Q Consensus 80 ~~~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 155 (514)
+.-.+.--..+++...|...+ ......+..+++..+.+-++..+...|..++++. ..-|.....|+-....-...|
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg 155 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLG 155 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc
Confidence 333333333444444444444 1123346778888888888989999999888884 334777888888888888889
Q ss_pred ChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHH
Q 010276 156 HNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGL 235 (514)
Q Consensus 156 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 235 (514)
+..-|.+.|++-+...|+ ..+|......-....++..+-.-... ....++...+|+.+ |..-...|+..-|.
T Consensus 156 Ni~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYer----fV~~HP~v~~wiky---arFE~k~g~~~~aR 227 (677)
T KOG1915|consen 156 NIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYER----FVLVHPKVSNWIKY---ARFEEKHGNVALAR 227 (677)
T ss_pred ccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHH----HheecccHHHHHHH---HHHHHhcCcHHHHH
Confidence 999999999999988884 45665555554444444333222221 12223455566655 77778888888888
Q ss_pred HHHHHHHHhCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhCChh---HHH----
Q 010276 236 ELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI--MTYMDEYAMLLKVKCDYS---KLS---- 303 (514)
Q Consensus 236 ~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~---~A~---- 303 (514)
.+|+++++...++ ..++...|..-..+..++.|...|+-++..-|.+ ...+..+...--+-|+.. +++
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 8998888765544 2344455666666778888888888888888877 334444444444445543 232
Q ss_pred -HHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCch---------hHHHHHH-HHHhcCChHHHHH
Q 010276 304 -KLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIP---------GYIMKGN-LLLSMKRPEAAVI 371 (514)
Q Consensus 304 -~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~A~~ 371 (514)
-.|+..+..+|.+-++|+..-.+... |+.+.-.+.|++++..-|.... .|.+.+. .-....+.+.+.+
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 23677788889898888887777666 8888888999999887665322 1222221 1245678888889
Q ss_pred HHHHhHhhcCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 010276 372 AFRGAQELRPDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR 446 (514)
Q Consensus 372 ~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~ 446 (514)
.|+.++++-|.. ..|...+....++.+...|.+.+-.++...|. ...+-....+-.++ ++++.....|++-++
T Consensus 388 vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-~KlFk~YIelElqL-~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 388 VYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK-DKLFKGYIELELQL-REFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc-hhHHHHHHHHHHHH-hhHHHHHHHHHHHHh
Confidence 999999988874 46888888888899999999999999998888 44455555556666 889999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc--h-HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 447 LEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD--S-LHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 447 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~-~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
.+|.+..+|...|.+-..+|+.+.|..+|+-+++...-+ . .|-...+.-...|.++.|...|++.|+
T Consensus 466 ~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 466 FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888765332 3 666677777888999999999998775
No 80
>PLN02789 farnesyltranstransferase
Probab=99.82 E-value=1.5e-17 Score=146.51 Aligned_cols=232 Identities=12% Similarity=0.043 Sum_probs=201.8
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh--h
Q 010276 224 CCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG-KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY--S 300 (514)
Q Consensus 224 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 300 (514)
++...+++++|+..+.+++..+|++..+|..++.++...| ++++++..++++++.+|++..+|...+.++...|+. +
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 3556789999999999999999999999999999999998 689999999999999999999999999999998874 7
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhc---CCh----HHHHHH
Q 010276 301 KLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM---KRP----EAAVIA 372 (514)
Q Consensus 301 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~A~~~ 372 (514)
+++.++.++++.+|.+..+|...+.++.. |++++++.+++++++.+|.+..+|..++.+.... |.+ ++++.+
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 88999999999999999999999998888 9999999999999999999999999999998776 333 478888
Q ss_pred HHHhHhhcCCh-HHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC---------------
Q 010276 373 FRGAQELRPDL-RSYQGLVHSYLQ----FSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS--------------- 432 (514)
Q Consensus 373 ~~~~~~~~~~~-~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--------------- 432 (514)
..+++..+|++ .+|..++.++.. .++..+|...+.+++...|.++.++..++.++.....
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~ 285 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEE 285 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccc
Confidence 88999999999 889999999988 4566789999999999999999999999999986311
Q ss_pred --ChHHHHHHHHHHHhhCCCChHHH
Q 010276 433 --GREKAKKFYESALRLEPGYLGAA 455 (514)
Q Consensus 433 --~~~~A~~~~~~a~~~~~~~~~~~ 455 (514)
..++|...++..-+.+|=....|
T Consensus 286 ~~~~~~a~~~~~~l~~~d~ir~~yw 310 (320)
T PLN02789 286 LSDSTLAQAVCSELEVADPMRRNYW 310 (320)
T ss_pred cccHHHHHHHHHHHHhhCcHHHHHH
Confidence 23567777776655555443333
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.81 E-value=2.7e-16 Score=145.51 Aligned_cols=307 Identities=15% Similarity=0.052 Sum_probs=198.4
Q ss_pred CCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHH
Q 010276 137 KARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWL 216 (514)
Q Consensus 137 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (514)
+|+.+.++..+|.++...|+.+.+...+.++.+..|.+.....
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e------------------------------------- 44 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERE------------------------------------- 44 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHH-------------------------------------
Confidence 4777888888888888888888888888888877775432221
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCh----HHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 010276 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKN----DEAILNFEKVRSIDPYIMTYMDEYAML 292 (514)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~~l~~~ 292 (514)
..+..+..+...|++++|...+++++..+|++..++.. +..+...|++ ..+.+.+......+|........+|.+
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 123 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG 123 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH
Confidence 12345777888888888888888888888888766654 4455444443 344444433334556666677777888
Q ss_pred HHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCch----hHHHHHHHHHhcCChH
Q 010276 293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIP----GYIMKGNLLLSMKRPE 367 (514)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 367 (514)
+...|++++|...++++++..|+++..+..+|.++.. |++++|+.++++++...|..+. .+..+|.++...|+++
T Consensus 124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence 8888888888888888888888888888888877766 8888888888888877664332 3456788888888888
Q ss_pred HHHHHHHHhHhhcCCh--HHHH----HHHHHHHhcCCHHHHHHH--H-HHHHhhCCC--CHHHHHHHHHHHHhcCCChHH
Q 010276 368 AAVIAFRGAQELRPDL--RSYQ----GLVHSYLQFSKVKEALYA--A-REAMKAMPQ--SAKALKLVGDVHASNASGREK 436 (514)
Q Consensus 368 ~A~~~~~~~~~~~~~~--~~~~----~l~~~~~~~~~~~~A~~~--~-~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~ 436 (514)
+|+..|++++...|.. .... .+...+...|....+... . .......|. ........+.++... |+.++
T Consensus 204 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~ 282 (355)
T cd05804 204 AALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA-GDKDA 282 (355)
T ss_pred HHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC-CCHHH
Confidence 8888888876655522 1111 222222333322222222 1 111111111 112223455666666 77777
Q ss_pred HHHHHHHHHhhCCC---------ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhC
Q 010276 437 AKKFYESALRLEPG---------YLGAALALAELHVIEGRNGDAVSLLERYLKDW 482 (514)
Q Consensus 437 A~~~~~~a~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (514)
|...++........ ...+....+.++...|++++|...+..++...
T Consensus 283 a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 283 LDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 77777766543211 13355667777778888888888888777654
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.81 E-value=4e-16 Score=144.37 Aligned_cols=300 Identities=12% Similarity=-0.027 Sum_probs=223.7
Q ss_pred chhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHH
Q 010276 212 SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288 (514)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 288 (514)
|+..+.++.+|..+...|+.+.+...+.++....|.+ .+.....+.++...|++++|...++++++.+|.+..++..
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4445555666888888899999999999988876644 5677788999999999999999999999999999877765
Q ss_pred HHHHHHHhCC----hhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhc
Q 010276 289 YAMLLKVKCD----YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM 363 (514)
Q Consensus 289 l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (514)
+..+...|+ ...+.+.+.......|........+|.++.. |++++|...++++++..|+++..+..+|.++...
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 555555544 4444444444334566666677777777777 9999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhHhhcCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHH---HHHHHhcCCC
Q 010276 364 KRPEAAVIAFRGAQELRPDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ--SAKALKLV---GDVHASNASG 433 (514)
Q Consensus 364 ~~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l---~~~~~~~~~~ 433 (514)
|++++|+..+++++...|.. ..+..++.++...|++++|+..+++++...|. ........ ...+... |.
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~ 240 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA-GH 240 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc-CC
Confidence 99999999999999987643 24678999999999999999999999876662 22211111 2222222 43
Q ss_pred hHHHHHH--H-HHHHhhCCC--ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC----------chHHHHHHHHHHHh
Q 010276 434 REKAKKF--Y-ESALRLEPG--YLGAALALAELHVIEGRNGDAVSLLERYLKDWAD----------DSLHVKLAQVFAAT 498 (514)
Q Consensus 434 ~~~A~~~--~-~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~l~~~~~~~ 498 (514)
...+..+ . .......|. ........+.++...|+.++|...++........ ..+....+.++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3333333 1 111111122 2233346888889999999999999887664422 13667778999999
Q ss_pred ccHHHHHHHHHHHhc
Q 010276 499 NMLQEALSHYEAALR 513 (514)
Q Consensus 499 g~~~~A~~~~~~al~ 513 (514)
|++++|.+.+..++.
T Consensus 321 g~~~~A~~~L~~al~ 335 (355)
T cd05804 321 GNYATALELLGPVRD 335 (355)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999875
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.79 E-value=4.8e-17 Score=149.41 Aligned_cols=237 Identities=22% Similarity=0.261 Sum_probs=164.7
Q ss_pred hCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcC--
Q 010276 244 RFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI--------DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSID-- 313 (514)
Q Consensus 244 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 313 (514)
..|.-..+...++..|...|+++.|+..++.+++. .|.-......+|.+|..++++.+|+.+|++++.+.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34555566666777777777777777777777776 33334444457777777777777777777776541
Q ss_pred ---CCC---hHHHHHHHHHHhh-cChhHHHHHHHHHHHhc--------ccCchhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 010276 314 ---PSR---PEVFVALSVLWER-KDERGALSYAEKSIRID--------ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQE 378 (514)
Q Consensus 314 ---~~~---~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 378 (514)
+++ ..++.+|+.+|.. |++++|..++++++++. |.-...+..++.++..++++++|+.+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 222 3456666666655 77777777777776653 22334567788888888888888888888877
Q ss_pred hcC-----Ch----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 010276 379 LRP-----DL----RSYQGLVHSYLQFSKVKEALYAAREAMKAM--------PQSAKALKLVGDVHASNASGREKAKKFY 441 (514)
Q Consensus 379 ~~~-----~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~~~A~~~~ 441 (514)
+.- ++ ..+.++|.+|..+|++++|.+++++++.+. +.....+..+|..+.+. +.+.+|...|
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~-k~~~~a~~l~ 432 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL-KKYEEAEQLF 432 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh-cccchHHHHH
Confidence 631 22 347788888888888888888888888754 22355677788888777 8888888888
Q ss_pred HHHHhh----C---CCChHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276 442 ESALRL----E---PGYLGAALALAELHVIEGRNGDAVSLLERYLKD 481 (514)
Q Consensus 442 ~~a~~~----~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (514)
.++..+ . |+....+.+|+.+|..+|++++|+++.++++..
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 877654 2 333457778888888888888888888887743
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.79 E-value=6.5e-17 Score=148.56 Aligned_cols=235 Identities=17% Similarity=0.124 Sum_probs=196.7
Q ss_pred hCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhc--------CCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHh---
Q 010276 278 IDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI--------DPSRPEVFVALSVLWER-KDERGALSYAEKSIRI--- 345 (514)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~--- 345 (514)
.+|....+...++..|...|+++.|...++.++.. .|.-......+|.+|.. +++.+|+..|++++.+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 35666777888999999999999999999999987 33334445557888888 9999999999999986
Q ss_pred -----cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCC-----h----HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010276 346 -----DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-----L----RSYQGLVHSYLQFSKVKEALYAAREAMK 411 (514)
Q Consensus 346 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (514)
+|....++.++|.+|...|++++|..++++++++... . ..+..++.++...+++++|..+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3444567899999999999999999999999887322 1 3478899999999999999999999987
Q ss_pred hC-----C---CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHHcCChhHHHHHH
Q 010276 412 AM-----P---QSAKALKLVGDVHASNASGREKAKKFYESALRLE--------PGYLGAALALAELHVIEGRNGDAVSLL 475 (514)
Q Consensus 412 ~~-----p---~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~ 475 (514)
+. + .-+....++|.+|... |++++|.++|++++... +.....+..+|..+.+.+++.+|...|
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~-gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKM-GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 53 2 2367789999999999 99999999999999863 233457889999999999999999999
Q ss_pred HHHHhhC----CCc----hHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 476 ERYLKDW----ADD----SLHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 476 ~~~~~~~----~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
..+..+. |+. ..+.+|+.+|..+|++++|+++-++++.
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 9988764 332 3899999999999999999999888763
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.78 E-value=1.8e-15 Score=141.09 Aligned_cols=292 Identities=14% Similarity=0.117 Sum_probs=229.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 010276 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (514)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (514)
.+.++.++...|++++|++.+++....-++...+.-..|.++..+|++++|...|...++.+|++...+..+..+.....
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence 34568888999999999999999988889999999999999999999999999999999999999999999888874433
Q ss_pred -----ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChh-HHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHH
Q 010276 298 -----DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDER-GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV 370 (514)
Q Consensus 298 -----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 370 (514)
..+.-..+|++.....|....+.... ..+.. ..+. .+..++...+.. .-|.....+-.+|....+..-..
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~-L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLP-LDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhh-cccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHH
Confidence 56777888888888887754432221 11112 3344 344455555443 34556666666665444433333
Q ss_pred HHHHHhHhh----------------cCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 010276 371 IAFRGAQEL----------------RPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS 432 (514)
Q Consensus 371 ~~~~~~~~~----------------~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 432 (514)
.++...... .|.. .+++.++..|...|++++|+.++++++...|..++.+...|.++... |
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~-G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHA-G 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC-C
Confidence 333333211 1222 35688899999999999999999999999999999999999999998 9
Q ss_pred ChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-------h-HHHH--HHHHHHHhccHH
Q 010276 433 GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-------S-LHVK--LAQVFAATNMLQ 502 (514)
Q Consensus 433 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~-~~~~--l~~~~~~~g~~~ 502 (514)
++.+|...++.+..+++.+-.+....+..+.+.|+.++|.+.+....+.+.+. + +|+. .|.+|.+.|++.
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999998899999999999999999999999886655221 2 5554 499999999999
Q ss_pred HHHHHHHHHhc
Q 010276 503 EALSHYEAALR 513 (514)
Q Consensus 503 ~A~~~~~~al~ 513 (514)
.|++.|..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=4.2e-15 Score=122.05 Aligned_cols=392 Identities=13% Similarity=0.054 Sum_probs=267.0
Q ss_pred HHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhh
Q 010276 7 QITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRS 86 (514)
Q Consensus 7 ~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 86 (514)
.+..++....|..++.+...-....+ ..-..+..+|.+|+...+|..|..+|++.-...|
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~p--------~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P------------ 75 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERSP--------RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP------------ 75 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCc--------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh------------
Confidence 35567888889988886554333211 1233678899999999999999999999888866
Q ss_pred hhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-ccHHHHHHHHHHHHhcCChhhHHHHHH
Q 010276 87 SLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKA-RNLQMSLLMAKLYRNSRHNRGAVACYK 165 (514)
Q Consensus 87 ~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 165 (514)
.....++.-+..+++.+.+.+|+.....+...+ -..+..-+-+-+.+..+++..+....+
T Consensus 76 -------------------~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLve 136 (459)
T KOG4340|consen 76 -------------------ELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVE 136 (459)
T ss_pred -------------------HHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHH
Confidence 344456667788888888888888887775542 234445555666777777777766555
Q ss_pred HHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 010276 166 ECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF 245 (514)
Q Consensus 166 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 245 (514)
+.-..+ .... ....|...++.|+++.|++-|+.+++..
T Consensus 137 Qlp~en--~Ad~----------------------------------------~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 137 QLPSEN--EADG----------------------------------------QINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred hccCCC--ccch----------------------------------------hccchheeeccccHHHHHHHHHHHHhhc
Confidence 532111 1111 1223777788899999999999999888
Q ss_pred CCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhh----CCCC-------------------------HHHHHHHHHHHHHh
Q 010276 246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI----DPYI-------------------------MTYMDEYAMLLKVK 296 (514)
Q Consensus 246 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~-------------------------~~~~~~l~~~~~~~ 296 (514)
.-++-+-+.++.++++.|+++.|+++..++++. .|.. .+++...+.++++.
T Consensus 175 GyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~ 254 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL 254 (459)
T ss_pred CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence 888888889999999999999999888777654 2321 34566778889999
Q ss_pred CChhHHHHHHHHHhhcC--CCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHH
Q 010276 297 CDYSKLSKLVHDLLSID--PSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFR 374 (514)
Q Consensus 297 ~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 374 (514)
|+++.|.+.+..+-... .-+|..+.+++..-..+++.+...-+.-.+.++|-.++.+-++-.+|++..-|+.|...+-
T Consensus 255 ~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 255 RNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred ccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 99999987654432221 1247788888877777889999999999999999878888888899999888888877654
Q ss_pred HhHhhcCCh------HHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC----ChHHHHHHHHH
Q 010276 375 GAQELRPDL------RSYQGLVHSYL-QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS----GREKAKKFYES 443 (514)
Q Consensus 375 ~~~~~~~~~------~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----~~~~A~~~~~~ 443 (514)
+ +|+. +..+.+-..+. .+-..++|.+-+...-...-+ .....-..+...... ....|++.|++
T Consensus 335 E----n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~--kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~ 408 (459)
T KOG4340|consen 335 E----NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTE--KLRKLAIQVQEARHNRDDEAIRKAVNEYDE 408 (459)
T ss_pred h----CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3 3442 22334433333 344666666655554322111 011111112111101 12445566666
Q ss_pred HHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHH
Q 010276 444 ALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLH 488 (514)
Q Consensus 444 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 488 (514)
++++. ..+....+++++...+|..+.+.|....+...++.+|
T Consensus 409 ~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~W 450 (459)
T KOG4340|consen 409 TLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDVW 450 (459)
T ss_pred HHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhccccee
Confidence 66653 5677889999999999999999999999888776654
No 87
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=2.9e-15 Score=125.90 Aligned_cols=378 Identities=15% Similarity=0.074 Sum_probs=267.0
Q ss_pred hhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHH
Q 010276 51 DSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVE 130 (514)
Q Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 130 (514)
+-+....||..|+..++-.+..+.. ....+...+|.|++.+|+|++|+..
T Consensus 30 edfls~rDytGAislLefk~~~~~E------------------------------EE~~~~lWia~C~fhLgdY~~Al~~ 79 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDRE------------------------------EEDSLQLWIAHCYFHLGDYEEALNV 79 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchh------------------------------hhHHHHHHHHHHHHhhccHHHHHHH
Confidence 3456778999999999887754321 2345777899999999999999999
Q ss_pred HhcCCCC-CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCc
Q 010276 131 MEGIPSK-ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDH 209 (514)
Q Consensus 131 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (514)
++.+... ..+.+.+..++.+++-.|.|.+|...-.+ .|+++-....+.
T Consensus 80 Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k----a~k~pL~~RLlf--------------------------- 128 (557)
T KOG3785|consen 80 YTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK----APKTPLCIRLLF--------------------------- 128 (557)
T ss_pred HHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh----CCCChHHHHHHH---------------------------
Confidence 9986444 56778899999999999999999875544 466555444332
Q ss_pred CCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276 210 LDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEY 289 (514)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 289 (514)
....+.++-++-...-+.+- +..+-...+|.+++..-.|.+|++.|.+++..+|+....-..+
T Consensus 129 -------------hlahklndEk~~~~fh~~Lq----D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ 191 (557)
T KOG3785|consen 129 -------------HLAHKLNDEKRILTFHSSLQ----DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYM 191 (557)
T ss_pred -------------HHHHHhCcHHHHHHHHHHHh----hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHH
Confidence 22233344444433333332 2235566788888888999999999999999999998888999
Q ss_pred HHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh---cChhHH----------------HHHHH----------
Q 010276 290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER---KDERGA----------------LSYAE---------- 340 (514)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~A----------------~~~~~---------- 340 (514)
+.+|.+..-++-+.+++.-.+...|+++-+....+....+ |+..++ ...++
T Consensus 192 ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngE 271 (557)
T KOG3785|consen 192 ALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGE 271 (557)
T ss_pred HHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCc
Confidence 9999999999999999999999999998887776654443 333221 11111
Q ss_pred HHHHhccc----CchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHH---Hhh
Q 010276 341 KSIRIDER----HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREA---MKA 412 (514)
Q Consensus 341 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~ 412 (514)
.+++.-|. -|++..++...|.++++..+|+...+. ++|.. .-+...|.+....|+--...+.++-+ +.+
T Consensus 272 gALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffql 348 (557)
T KOG3785|consen 272 GALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQL 348 (557)
T ss_pred cHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Confidence 12222222 356678888888999999998887765 46665 44666677777777654444443333 222
Q ss_pred CC------CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276 413 MP------QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS 486 (514)
Q Consensus 413 ~p------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 486 (514)
-. +.......++.+++-. .++++.+.++...-...-++....++++......|++.+|.+.|-+.-...-.+.
T Consensus 349 VG~Sa~ecDTIpGRQsmAs~fFL~-~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~ 427 (557)
T KOG3785|consen 349 VGESALECDTIPGRQSMASYFFLS-FQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNK 427 (557)
T ss_pred hcccccccccccchHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhh
Confidence 21 2233345566666665 7888888888776666667778889999999999999999999887644332333
Q ss_pred --HHHHHHHHHHHhccHHHHHHHHHH
Q 010276 487 --LHVKLAQVFAATNMLQEALSHYEA 510 (514)
Q Consensus 487 --~~~~l~~~~~~~g~~~~A~~~~~~ 510 (514)
....++.||...|+++-|-+.|-+
T Consensus 428 ~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 428 ILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 556789999999999888877643
No 88
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.75 E-value=4.3e-14 Score=121.23 Aligned_cols=291 Identities=17% Similarity=0.096 Sum_probs=229.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhC
Q 010276 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY-IMTYMDEYAMLLKVKC 297 (514)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 297 (514)
...|..-+..|+|.+|.....+.-+..+...-.+..-+...-..|+.+.|-.++.++-+..++ ........+.++...|
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 345777788899999999999987777766667777788999999999999999999998444 3567788999999999
Q ss_pred ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCch---hHHHHHH--HHHhcCChHHHH-
Q 010276 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIP---GYIMKGN--LLLSMKRPEAAV- 370 (514)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~A~- 370 (514)
+++.|..-..++++..|.++.+......+|.. |++.....++.+.-+..--+.. -+-..+. ++.+.++-..+.
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 99999999999999999999999999999988 9999999888887664332221 1111111 122222222222
Q ss_pred --HHHHHhHhhcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 010276 371 --IAFRGAQELRPD-LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL 447 (514)
Q Consensus 371 --~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~ 447 (514)
.+++..-..-.. ......++.-+...|+.++|.+..+++++..-+.. ....++.+ . .++...=++..++.++.
T Consensus 248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l--~-~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRL--R-PGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhc--C-CCCchHHHHHHHHHHHh
Confidence 233332222112 24567778888999999999999999998765533 33333322 2 28888999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 448 EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
.|++|..+..||.++.+.+.+.+|..+|+.+++..|+...+..+|.++.+.|+..+|.+.++.++.
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999873
No 89
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.73 E-value=9.9e-14 Score=119.06 Aligned_cols=299 Identities=17% Similarity=0.075 Sum_probs=229.4
Q ss_pred hhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHh
Q 010276 41 LKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120 (514)
Q Consensus 41 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 120 (514)
..+.....-|-.-+..|+|.+|.+...++-+..+ .+.-.+..-++.--.
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e-------------------------------~p~l~~l~aA~AA~q 130 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGE-------------------------------QPVLAYLLAAEAAQQ 130 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCc-------------------------------chHHHHHHHHHHHHh
Confidence 3345566667777888999999999988665532 233344455677778
Q ss_pred cCCHHHHHHHHhcCCCC--CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhcc
Q 010276 121 LGETKAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQT 198 (514)
Q Consensus 121 ~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (514)
.|+++.|-.++.++.+. ..+......++++....|+++.|.....++++..|.++.+....
T Consensus 131 rgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa----------------- 193 (400)
T COG3071 131 RGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLA----------------- 193 (400)
T ss_pred cccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHH-----------------
Confidence 99999999999997555 45666778889999999999999999999999999999888654
Q ss_pred CCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHH--HHHHHHH--HHHhCC---hHHHHH
Q 010276 199 PNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN-IHI--LLEMAKV--DAIIGK---NDEAIL 270 (514)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~--~~~la~~--~~~~~~---~~~A~~ 270 (514)
..+|...|++.....++.++.+..--+ .+. +-..+.. +-+.++ .+.-..
T Consensus 194 -----------------------~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 194 -----------------------LRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred -----------------------HHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 677888899998888888887643322 111 1111111 112222 222233
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCc
Q 010276 271 NFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHI 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~ 350 (514)
+++..-..-..++.....++.-+...|+.++|.++.+.+++..-+.. +..+.-...-++...=++..++.++..|++|
T Consensus 251 ~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 251 WWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred HHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 55555444455678888999999999999999999999998654433 2222222333888899999999999999999
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 010276 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKA 412 (514)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 412 (514)
..+..+|..+++.+.|.+|..+|+.+++..|+...+..+|.++.++|+..+|.+..++++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998853
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.72 E-value=1.3e-13 Score=128.71 Aligned_cols=302 Identities=17% Similarity=0.110 Sum_probs=203.4
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhc
Q 010276 107 ENEVKYKIASCHFALGETKAAIVEMEGIPSK-ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELG 185 (514)
Q Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 185 (514)
..++.+..+.++...|++++|+..+++.... .+.....-..|.++.+.|++++|...|+..++.+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 4677788889999999999999999986444 677888899999999999999999999999999999999998885543
Q ss_pred cCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCh
Q 010276 186 ATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKN 265 (514)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~ 265 (514)
.... -....+.+.-..+|++.....|....... +...+..-..+
T Consensus 83 g~~~-----------------------------------~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~~g~~F 126 (517)
T PF12569_consen 83 GLQL-----------------------------------QLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFLEGDEF 126 (517)
T ss_pred hhhc-----------------------------------ccccccHHHHHHHHHHHHHhCccccchhH-hhcccCCHHHH
Confidence 1110 01113455666777777777776532221 11111111122
Q ss_pred H-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhc---------------CCCCh--HHHHHHHHHH
Q 010276 266 D-EAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI---------------DPSRP--EVFVALSVLW 327 (514)
Q Consensus 266 ~-~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~--~~~~~l~~~~ 327 (514)
. .+..++...+.. .-|.....+-.+|....+..-...++...... .|... .+++.++..+
T Consensus 127 ~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhy 204 (517)
T PF12569_consen 127 KERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHY 204 (517)
T ss_pred HHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHH
Confidence 2 233333333332 23344444444444333332223333332211 11111 3446667777
Q ss_pred hh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHH-HHHHHHHHHhcCCHHHHHHH
Q 010276 328 ER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRS-YQGLVHSYLQFSKVKEALYA 405 (514)
Q Consensus 328 ~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~ 405 (514)
.. |++++|+.++++++...|..++.+...|.++...|++.+|...++.+..+++.++. -...+..+++.|+.++|...
T Consensus 205 d~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 205 DYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 66 88889999999999999998888999999999999999999999999888888844 44557778888899998888
Q ss_pred HHHHHhhC--CCC-------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 010276 406 AREAMKAM--PQS-------AKALKLVGDVHASNASGREKAKKFYESALRL 447 (514)
Q Consensus 406 ~~~~~~~~--p~~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~ 447 (514)
+......+ |.. .+.....|.+|.+. |++..|++.|..+.+.
T Consensus 285 ~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~-~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 285 ASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ-GDYGLALKRFHAVLKH 334 (517)
T ss_pred HHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence 87765543 211 23335678888887 8888888888877764
No 91
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.71 E-value=3.2e-15 Score=129.21 Aligned_cols=186 Identities=17% Similarity=0.107 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCCh---HHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCch---h
Q 010276 280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP---EVFVALSVLWER-KDERGALSYAEKSIRIDERHIP---G 352 (514)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~---~ 352 (514)
+..+..++.+|..+...|++++|+..+++++...|+++ .+++.+|.++.. |++++|+..++++++..|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 33455566666666666666666666666666555544 344555555544 5555555555555555555444 3
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276 353 YIMKGNLLLSM--------KRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV 423 (514)
Q Consensus 353 ~~~~~~~~~~~--------~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 423 (514)
++.+|.++... |++++|+..|++++..+|++ .++..+..+... ... .......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~----~~~-------------~~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL----RNR-------------LAGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH----HHH-------------HHHHHHHH
Confidence 45555555443 44445555555555444443 111111100000 000 01112344
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCC
Q 010276 424 GDVHASNASGREKAKKFYESALRLEPGY---LGAALALAELHVIEGRNGDAVSLLERYLKDWA 483 (514)
Q Consensus 424 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 483 (514)
|.++... |++.+|+..++++++..|+. +.+++.+|.++...|++++|..+++......|
T Consensus 173 a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 173 ARFYLKR-GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHc-CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4555554 55555555555555554432 24555555555555555555555555444433
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=8.9e-13 Score=118.64 Aligned_cols=362 Identities=15% Similarity=0.061 Sum_probs=207.3
Q ss_pred ccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHH
Q 010276 103 SAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALA 182 (514)
Q Consensus 103 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 182 (514)
..|++.++......+++..++|++|+.+.+.-..........+..+.|.++.++.++|+..++ ..++.+...
T Consensus 41 ~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~l----- 112 (652)
T KOG2376|consen 41 IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKL----- 112 (652)
T ss_pred cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHH-----
Confidence 346777777778888888888888886666533222222233677888888888888888877 233332222
Q ss_pred HhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q 010276 183 ELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAII 262 (514)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 262 (514)
..+.|.++++.|+|++|+.+|+.+.+.+.++.+............
T Consensus 113 -----------------------------------l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a 157 (652)
T KOG2376|consen 113 -----------------------------------LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA 157 (652)
T ss_pred -----------------------------------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 234588888899999999999888765444432222111111000
Q ss_pred CChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHhhc--------CCCCh-------HHHHHHHHH
Q 010276 263 GKNDEAILNFEKVRSIDPY-IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI--------DPSRP-------EVFVALSVL 326 (514)
Q Consensus 263 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~-------~~~~~l~~~ 326 (514)
. ..+ . ..+.+...|. ..+.+++.+.++...|+|.+|++.+++++.+ +.+.. .+...++.+
T Consensus 158 ~--l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 158 A--LQV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred h--hhH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 0 000 0 1111122222 3344455555555555555555555554211 00100 112222322
Q ss_pred Hhh-cChhHHHHHHHHHHHhcccCch-------------------------------------------------hHHHH
Q 010276 327 WER-KDERGALSYAEKSIRIDERHIP-------------------------------------------------GYIMK 356 (514)
Q Consensus 327 ~~~-~~~~~A~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~ 356 (514)
+.. |+..+|...|...++.+|.+.. ++.+.
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~ 313 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN 313 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 222 5555555555555554443322 23334
Q ss_pred HHHHHhcCChHHHHHHHHHhHhhcCChHH-HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCCh
Q 010276 357 GNLLLSMKRPEAAVIAFRGAQELRPDLRS-YQGLVHSYLQFSKVKEALYAAREAMKAMPQS-AKALKLVGDVHASNASGR 434 (514)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~ 434 (514)
+.+.+..+.-+.+.+.....-...|.... -........+...+.+|.+++....+.+|.+ ..+...++.+.... |++
T Consensus 314 ~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~-gn~ 392 (652)
T KOG2376|consen 314 ALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ-GNP 392 (652)
T ss_pred HHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCH
Confidence 44444444444444444443333444411 1122222223336889999999999999987 66778888888888 999
Q ss_pred HHHHHHHHHH--------HhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC----c----hHHHHHHHHHHHh
Q 010276 435 EKAKKFYESA--------LRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD----D----SLHVKLAQVFAAT 498 (514)
Q Consensus 435 ~~A~~~~~~a--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----~----~~~~~l~~~~~~~ 498 (514)
+.|++.+... .+.. ..|.+.-.+-.++++.++.+.|...+..++..... . ..+...+.+-.+.
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 9999999833 3322 23555566677778888888888888887765421 1 3666678888888
Q ss_pred ccHHHHHHHHHHHhc
Q 010276 499 NMLQEALSHYEAALR 513 (514)
Q Consensus 499 g~~~~A~~~~~~al~ 513 (514)
|+.++|...+++.++
T Consensus 472 G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 472 GNEEEASSLLEELVK 486 (652)
T ss_pred CchHHHHHHHHHHHH
Confidence 999999999998764
No 93
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.70 E-value=6.5e-15 Score=127.31 Aligned_cols=187 Identities=20% Similarity=0.138 Sum_probs=119.8
Q ss_pred chhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH---H
Q 010276 212 SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI---HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT---Y 285 (514)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~ 285 (514)
+.....++..|..++..|++++|+..+++++..+|+++ .+++.+|.++...|++++|+..++++++.+|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 44455667778888888888888888888888888765 57788888888888888888888888888887765 6
Q ss_pred HHHHHHHHHHh--------CChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHH
Q 010276 286 MDEYAMLLKVK--------CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKG 357 (514)
Q Consensus 286 ~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 357 (514)
++.+|.++... |++++|++.+++++..+|+++..+..+..+... .. ........+|
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~---~~-------------~~~~~~~~~a 173 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL---RN-------------RLAGKELYVA 173 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH---HH-------------HHHHHHHHHH
Confidence 77778877765 566666666666666666665444332221110 00 0011123455
Q ss_pred HHHHhcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 010276 358 NLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMP 414 (514)
Q Consensus 358 ~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 414 (514)
..+...|++.+|+..++++++..|+. .++..+|.++...|++++|..+++.+....|
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 55566666666666666666555432 3455555566556666655555555544443
No 94
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.69 E-value=1.3e-15 Score=118.77 Aligned_cols=122 Identities=15% Similarity=0.021 Sum_probs=68.0
Q ss_pred HHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 010276 371 IAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~ 450 (514)
..++++++.+|+. +..+|.++...|++++|+..|++++..+|.+..++..+|.++... |++++|+..|++++.++|+
T Consensus 14 ~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML-KEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCC
Confidence 3455555555553 334455555555555555555555555555555555555555555 5555555555555555555
Q ss_pred ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHH
Q 010276 451 YLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVF 495 (514)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~ 495 (514)
++.+++.+|.++...|++++|+..|+++++..|++. .+..++.+.
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 555555555555555555555555555555555543 444444443
No 95
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.69 E-value=1.2e-15 Score=119.08 Aligned_cols=126 Identities=11% Similarity=0.072 Sum_probs=112.4
Q ss_pred HHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 010276 336 LSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMP 414 (514)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 414 (514)
...++++++.+|++ +..+|.++...|++++|+..|++++..+|.+ .+|..+|.++...|++++|+..|++++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46788888888875 5678999999999999999999999999988 8899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 010276 415 QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE 465 (514)
Q Consensus 415 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 465 (514)
+++.+++.+|.++... |++++|+..|+++++..|+++..+..++.+....
T Consensus 90 ~~~~a~~~lg~~l~~~-g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMM-GEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 9999999999999998 9999999999999999999999988888776543
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.67 E-value=1.3e-12 Score=136.31 Aligned_cols=366 Identities=15% Similarity=0.060 Sum_probs=237.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCc
Q 010276 109 EVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATP 188 (514)
Q Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 188 (514)
.++...+..+...|++.+|+.........+.........+......|++..+...+..+ |....
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~l----p~~~~------------ 405 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNAL----PWEVL------------ 405 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhC----CHHHH------------
Confidence 34445566666777777777766665433333344444556666666666554444332 11000
Q ss_pred ccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHH
Q 010276 189 KDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPN---------NIHILLEMAKVD 259 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~la~~~ 259 (514)
..++. .....+..+...|++++|...+..+....+. .......++.++
T Consensus 406 --------------------~~~~~---l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 406 --------------------LENPR---LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred --------------------hcCcc---hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 00010 1123466667788888888888877654221 133445567788
Q ss_pred HHhCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC------hHHHHHHHHHHh
Q 010276 260 AIIGKNDEAILNFEKVRSIDPYI-----MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR------PEVFVALSVLWE 328 (514)
Q Consensus 260 ~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~ 328 (514)
...|++++|...+++++...|.. ..+...+|.++...|++++|...+.+++...... ...+..++.++.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 88899999999998888754432 1345667888888999999998888887653321 123445566555
Q ss_pred h-cChhHHHHHHHHHHHhccc--------CchhHHHHHHHHHhcCChHHHHHHHHHhHhhcC----Ch--HHHHHHHHHH
Q 010276 329 R-KDERGALSYAEKSIRIDER--------HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP----DL--RSYQGLVHSY 393 (514)
Q Consensus 329 ~-~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~--~~~~~l~~~~ 393 (514)
. |++++|...+++++..... ....+..+|.++...|++++|...+.+++.... .. ..+..++.++
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 5 8999999988888775322 112345678888888999999999888876532 11 3456678888
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCC---HHHHH----HHHHHHHhcCCChHHHHHHHHHHHhhCCCChH----HHHHHHHHH
Q 010276 394 LQFSKVKEALYAAREAMKAMPQS---AKALK----LVGDVHASNASGREKAKKFYESALRLEPGYLG----AALALAELH 462 (514)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~p~~---~~~~~----~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~la~~~ 462 (514)
...|++++|...+.++....+.. ..... .....+... |+.+.|...+.......+.... .+..++.++
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT-GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC-CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 89999999999888887653321 11111 112333444 8888888887765543322221 245788888
Q ss_pred HHcCChhHHHHHHHHHHhhCCC-----c--hHHHHHHHHHHHhccHHHHHHHHHHHhcC
Q 010276 463 VIEGRNGDAVSLLERYLKDWAD-----D--SLHVKLAQVFAATNMLQEALSHYEAALRL 514 (514)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~~~~~-----~--~~~~~l~~~~~~~g~~~~A~~~~~~al~l 514 (514)
...|++++|...+++++..... . .++..+|.++...|+.++|...+.+++++
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999988876322 1 36777889999999999999999988763
No 97
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=2.3e-14 Score=115.03 Aligned_cols=182 Identities=17% Similarity=0.122 Sum_probs=149.5
Q ss_pred CchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 010276 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (514)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (514)
.++.|..+-....+.+..|+.+-|..+++++....|++..+....|..+...|++++|+++|+..++.+|.+...+....
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 45556655555677778888889999999888888988888888888888899999999999999998998888888888
Q ss_pred HHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcC---Ch
Q 010276 291 MLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK---RP 366 (514)
Q Consensus 291 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 366 (514)
.+...+|+.-+|++.+...++.++.++++|..++.+|.. |+|++|.-++++++-+.|.++..+..+|.+++.+| +.
T Consensus 128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 888888888888888888888888888888888888888 88888888888888888888888888888887766 45
Q ss_pred HHHHHHHHHhHhhcCCh-HHHHHHHHH
Q 010276 367 EAAVIAFRGAQELRPDL-RSYQGLVHS 392 (514)
Q Consensus 367 ~~A~~~~~~~~~~~~~~-~~~~~l~~~ 392 (514)
+.|.++|.++++++|.+ .+++.+-.+
T Consensus 208 ~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 208 ELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 67788888888888854 666555443
No 98
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.66 E-value=1.1e-10 Score=106.33 Aligned_cols=492 Identities=13% Similarity=0.092 Sum_probs=303.8
Q ss_pred HHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhh
Q 010276 5 KEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSS 84 (514)
Q Consensus 5 ~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 84 (514)
+.-++.++.+|+........+..|...+ -..+-..|-..-...-..|-.+-++..|++-++..|....-+.
T Consensus 106 l~Ylq~l~~Q~~iT~tR~tfdrALraLp------vtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyi--- 176 (835)
T KOG2047|consen 106 LDYLQFLIKQGLITRTRRTFDRALRALP------VTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYI--- 176 (835)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCc------hHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHH---
Confidence 3445556666666655554444433221 1122223333334445566677888888888888876633322
Q ss_pred hhhhhccccCCCCccccc----------ccCChhHHHHHHHHHHHhcCCHHHH---HHHHhc-CCCC-CccHHHHHHHHH
Q 010276 85 RSSLSTSNRSSSPNSFNV----------SAINENEVKYKIASCHFALGETKAA---IVEMEG-IPSK-ARNLQMSLLMAK 149 (514)
Q Consensus 85 ~~~~~~~~~~~a~~~~~~----------~~~~~~~~~~~la~~~~~~g~~~~A---~~~~~~-~~~~-~~~~~~~~~l~~ 149 (514)
......++..++.+.+.. ..+.+...+..+.....+.-+.-.. -.++.. +..- ..-...|..||.
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 222233444444433311 1122333444444433332221111 122332 1111 234556788999
Q ss_pred HHHhcCChhhHHHHHHHHHhcCC---CCHHHHHHHHHh---------c------cCcc---cHhHHHhccCCcCCCCC--
Q 010276 150 LYRNSRHNRGAVACYKECLRHCP---FFIEAITALAEL---------G------ATPK---DIISLFAQTPNRSGRAP-- 206 (514)
Q Consensus 150 ~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~---------~------~~~~---~~~~~~~~~~~~~~~~~-- 206 (514)
.|.+.|.+++|...|++++..-- +...++...+.. . .+.+ +++-.+.....+..+.+
T Consensus 257 YYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 99999999999999999986542 222222211111 0 0000 00111111111111111
Q ss_pred -------CCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCc-----HHHHHHHHHHHHHhCChHHHHHHHH
Q 010276 207 -------FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQ-RFPNN-----IHILLEMAKVDAIIGKNDEAILNFE 273 (514)
Q Consensus 207 -------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~ 273 (514)
.++.....|. -.+-+..|+..+-+..|.++++ .+|.. ..+|...|..|...|+.+.|...|+
T Consensus 337 lNsVlLRQn~~nV~eW~-----kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWH-----KRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred HHHHHHhcCCccHHHHH-----hhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1111122222 2344566888888999998886 45543 4688999999999999999999999
Q ss_pred HHHhhCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCC------------------ChHHHHHHHHHHhh-c
Q 010276 274 KVRSIDPYI----MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS------------------RPEVFVALSVLWER-K 330 (514)
Q Consensus 274 ~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------------~~~~~~~l~~~~~~-~ 330 (514)
++.+..-.. ..+|...|..-....+++.|.++.+++...... +..+|...+.+... |
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 999864332 568899999999999999999999998764322 12345555555555 8
Q ss_pred ChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh---HHHHHH---HHHHHhcCCHHHHHH
Q 010276 331 DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGL---VHSYLQFSKVKEALY 404 (514)
Q Consensus 331 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~l---~~~~~~~~~~~~A~~ 404 (514)
-++.....|++.+.+.--.|....+.|..+....-+++|.+.|++.+.+.|-. +.|... ...-......+.|..
T Consensus 492 tfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 88888999999999988889999999999999999999999999999986543 555433 222334458899999
Q ss_pred HHHHHHhhCCCC-H-HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc----CChhHHHHHHHHH
Q 010276 405 AAREAMKAMPQS-A-KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE----GRNGDAVSLLERY 478 (514)
Q Consensus 405 ~~~~~~~~~p~~-~-~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~ 478 (514)
+|+++++..|.. . .++...+..-... |-...|+..|+++-..-+. .-.+.+-.+|.+. =-...-..+|+++
T Consensus 572 LFEqaL~~Cpp~~aKtiyLlYA~lEEe~-GLar~amsiyerat~~v~~--a~~l~myni~I~kaae~yGv~~TR~iYeka 648 (835)
T KOG2047|consen 572 LFEQALDGCPPEHAKTIYLLYAKLEEEH-GLARHAMSIYERATSAVKE--AQRLDMYNIYIKKAAEIYGVPRTREIYEKA 648 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Confidence 999999987742 2 3445556666666 8888999999997664332 2222333333221 1134557888999
Q ss_pred HhhCCCc---hHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 479 LKDWADD---SLHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 479 ~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
++.-|+. ......+..-.+.|..+.|...|.-+-+
T Consensus 649 Ie~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 649 IESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 9988886 3666778888899999999988875543
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.64 E-value=6.6e-12 Score=131.17 Aligned_cols=340 Identities=13% Similarity=0.037 Sum_probs=244.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC--CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC----HHHHHHHHH
Q 010276 110 VKYKIASCHFALGETKAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFF----IEAITALAE 183 (514)
Q Consensus 110 ~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~l~~ 183 (514)
.....+......|++..+...++.++.. ..++......+.++...|++++|...+..+....+.. ....
T Consensus 376 ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~----- 450 (903)
T PRK04841 376 ILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTL----- 450 (903)
T ss_pred HHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhH-----
Confidence 3445667777889999888888877432 3445566778888899999999999998886543221 0000
Q ss_pred hccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHH
Q 010276 184 LGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN-----IHILLEMAKV 258 (514)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~la~~ 258 (514)
........+.++...|++++|...+++++...|.. ..+...+|.+
T Consensus 451 ------------------------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 451 ------------------------------QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred ------------------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 01112234777888999999999999998754443 2355678888
Q ss_pred HHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCC--------ChHHHHHHH
Q 010276 259 DAIIGKNDEAILNFEKVRSIDPYI------MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS--------RPEVFVALS 324 (514)
Q Consensus 259 ~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~l~ 324 (514)
+...|++++|...+++++...... ..++..++.++...|++++|...+++++..... ....+..++
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 999999999999999998753321 245677899999999999999999988775221 122344556
Q ss_pred HHHhh-cChhHHHHHHHHHHHhccc-----CchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh---HHH-----HHHH
Q 010276 325 VLWER-KDERGALSYAEKSIRIDER-----HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSY-----QGLV 390 (514)
Q Consensus 325 ~~~~~-~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~-----~~l~ 390 (514)
.++.. |++++|...+.+++..... ....+..+|.++...|++++|...+.++....+.. ..+ ....
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 55555 9999999999998875332 23445668889999999999999999987753321 111 1122
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC------CChHHHHHHHH
Q 010276 391 HSYLQFSKVKEALYAAREAMKAMPQSA----KALKLVGDVHASNASGREKAKKFYESALRLEP------GYLGAALALAE 460 (514)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~ 460 (514)
..+...|+.+.|...+.......+... ..+..++.++... |++++|...+++++.... ....++..+|.
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL-GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 445568899999998877654332222 2246788889988 999999999999987521 22347788999
Q ss_pred HHHHcCChhHHHHHHHHHHhhCCCc
Q 010276 461 LHVIEGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (514)
++...|+.++|...+.++++.....
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999987654
No 100
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.63 E-value=8.2e-14 Score=113.22 Aligned_cols=175 Identities=17% Similarity=0.103 Sum_probs=126.4
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhc
Q 010276 302 LSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR 380 (514)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 380 (514)
+...+-.....+|++..+ ..++..+.. |+-+.+..+..++...+|.+.......|......|++..|+..++++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 555555556667777777 555554444 777777777777777777777666667777777777777777777777777
Q ss_pred CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHH
Q 010276 381 PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALA 459 (514)
Q Consensus 381 ~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 459 (514)
|++ ..|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..+.-. |+++.|..++..+....+.+..+..+++
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~-gd~~~A~~lll~a~l~~~ad~~v~~NLA 209 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR-GDLEDAETLLLPAYLSPAADSRVRQNLA 209 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc-CCHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 776 67777777777777777777777777777777777777777777776 7777777777777777776777777777
Q ss_pred HHHHHcCChhHHHHHHHHH
Q 010276 460 ELHVIEGRNGDAVSLLERY 478 (514)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~~ 478 (514)
.+....|++++|..+..+-
T Consensus 210 l~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 210 LVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHhhcCChHHHHhhcccc
Confidence 7777777777777665543
No 101
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=5.7e-12 Score=101.54 Aligned_cols=185 Identities=18% Similarity=0.154 Sum_probs=131.3
Q ss_pred CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHH
Q 010276 279 DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKG 357 (514)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 357 (514)
.|+....+-....+....|+.+-|..+++++....|+++.+....|..+.. |++++|+++|+..++-+|.+..++...-
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 334444555556666667777777777777777777777777666666666 7777777777777777777777777766
Q ss_pred HHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC--Ch
Q 010276 358 NLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS--GR 434 (514)
Q Consensus 358 ~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--~~ 434 (514)
.+...+|+.-+|++.+...++..+.+ ++|..++.+|...|++++|.-++++++-+.|.++..+..+|.++...+| +.
T Consensus 128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 67777777777777777777777776 7777777777777777777777777777777777777777777766522 34
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 010276 435 EKAKKFYESALRLEPGYLGAALALAELHV 463 (514)
Q Consensus 435 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 463 (514)
.-|.++|.++++++|.+..+++.+-.+..
T Consensus 208 ~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 208 ELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 67777888888888777666666554443
No 102
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.62 E-value=1.3e-13 Score=111.99 Aligned_cols=172 Identities=17% Similarity=0.108 Sum_probs=84.6
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhc
Q 010276 268 AILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRID 346 (514)
Q Consensus 268 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~ 346 (514)
+...+-.....+|.+..+ ..++..+...|+-+.+..+..++....|.+.......|..... |++.+|+..+.++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 333333334444444444 4445555555555555555544444445554444444444443 55555555555555555
Q ss_pred ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 010276 347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD 425 (514)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 425 (514)
|+++.+|..+|.+|.+.|++++|...|.+++++.|.. .+..++|..+.-.|+++.|..++..+....+.+..+..+++.
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 5555555555555555555555555555555555444 444555555555555555555555554444444555555555
Q ss_pred HHHhcCCChHHHHHHH
Q 010276 426 VHASNASGREKAKKFY 441 (514)
Q Consensus 426 ~~~~~~~~~~~A~~~~ 441 (514)
+.... |++++|....
T Consensus 211 ~~~~~-g~~~~A~~i~ 225 (257)
T COG5010 211 VVGLQ-GDFREAEDIA 225 (257)
T ss_pred HHhhc-CChHHHHhhc
Confidence 55444 5555444433
No 103
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.62 E-value=7e-14 Score=136.39 Aligned_cols=222 Identities=8% Similarity=-0.021 Sum_probs=142.3
Q ss_pred CCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276 210 LDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEY 289 (514)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 289 (514)
-++........++..+...+++++|+..++..++.+|+...+++.+|.++.+.+++.++... .++...+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~------ 97 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL------ 97 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc------
Confidence 34555555555566666777777777777777777777777777777777777766655544 4444333322
Q ss_pred HHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHH
Q 010276 290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEA 368 (514)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (514)
++ .+.+.+...+...+.+..+++.+|.+|.. |+.++|...++++++.+|+++.+..++|..|... +.++
T Consensus 98 --------~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 98 --------KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred --------ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 22 22333333333345555677777777766 7777777777777777777777777777777777 7777
Q ss_pred HHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH--------------------HHHHHHH
Q 010276 369 AVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALK--------------------LVGDVHA 428 (514)
Q Consensus 369 A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~--------------------~l~~~~~ 428 (514)
|+.++.+++.. +...+++.++.+++.+.+..+|++.+.+. -+-.+|.
T Consensus 168 A~~m~~KAV~~-------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~ 234 (906)
T PRK14720 168 AITYLKKAIYR-------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYK 234 (906)
T ss_pred HHHHHHHHHHH-------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 77777777654 44555666666667776666666544321 1224455
Q ss_pred hcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 010276 429 SNASGREKAKKFYESALRLEPGYLGAALALAELHV 463 (514)
Q Consensus 429 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 463 (514)
.. +++++++..++.+++.+|.+..+...++.+|.
T Consensus 235 ~~-~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 235 AL-EDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hh-hhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 55 67777777777777777777777777777776
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.62 E-value=1e-13 Score=114.29 Aligned_cols=122 Identities=20% Similarity=0.240 Sum_probs=101.1
Q ss_pred cCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HhcCCC--hHHHH
Q 010276 363 MKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH-ASNASG--REKAK 438 (514)
Q Consensus 363 ~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~~--~~~A~ 438 (514)
.++.++++..++++++.+|++ ..|..+|.++...|++++|+..|++++...|+++.++..+|.++ ... |+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~-g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQA-GQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CCCCcHHHH
Confidence 567788888888888888887 77888888888888888888888888888888888888888865 454 66 48888
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276 439 KFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 439 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (514)
..++++++.+|+++.++..+|..+...|++++|+..++++++..|.+
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 88888888888888888888888888888888888888888888765
No 105
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.61 E-value=1.1e-14 Score=124.94 Aligned_cols=265 Identities=14% Similarity=0.141 Sum_probs=149.9
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhCChHHHHHHHHHHHhh------CCCCHHHH
Q 010276 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNN----IHILLEMAKVDAIIGKNDEAILNFEKVRSI------DPYIMTYM 286 (514)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~ 286 (514)
.+-..|.-+++.|++...+.+|+.+++...++ ..+|..+|.+|+.+++|++|+++-.-=+.+ .-....+-
T Consensus 19 eLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKss 98 (639)
T KOG1130|consen 19 ELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSS 98 (639)
T ss_pred HHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccc
Confidence 34456888999999999999999999877766 457778899999999999998875432221 12234456
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHhhcCC------CChHHHHHHHHHHhh-cC--------------------hhHHHHHH
Q 010276 287 DEYAMLLKVKCDYSKLSKLVHDLLSIDP------SRPEVFVALSVLWER-KD--------------------ERGALSYA 339 (514)
Q Consensus 287 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~-~~--------------------~~~A~~~~ 339 (514)
-++|..+...|.+++|+.+..+-+.... ....+++++|.+|.. |+ ++.|.++|
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 6788888888889888888777655322 124667777777765 11 11222333
Q ss_pred HHHHHhccc------CchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHHHHH
Q 010276 340 EKSIRIDER------HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAA 406 (514)
Q Consensus 340 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~ 406 (514)
..-+++... ...++-++|+.|+-+|+|+.|+..-+.-+.+...+ .++.++|.++.-.|+++.|+++|
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 322222111 12234455555555566666655555444432221 24555555555555555555555
Q ss_pred HHHHhhC----C--CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC------CChHHHHHHHHHHHHcCChhHHHHH
Q 010276 407 REAMKAM----P--QSAKALKLVGDVHASNASGREKAKKFYESALRLEP------GYLGAALALAELHVIEGRNGDAVSL 474 (514)
Q Consensus 407 ~~~~~~~----p--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~ 474 (514)
+..+.+. . ..+...+.+|..|.-. .++++|+.++.+-+.+.. ....+++.||..+-..|..++|+.+
T Consensus 259 K~tl~LAielg~r~vEAQscYSLgNtytll-~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~f 337 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLL-KEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYF 337 (639)
T ss_pred HHHHHHHHHhcchhHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 5544321 1 1133344455555544 555555555554443311 1123445555555555555555555
Q ss_pred HHHHHhhC
Q 010276 475 LERYLKDW 482 (514)
Q Consensus 475 ~~~~~~~~ 482 (514)
.++.++..
T Consensus 338 ae~hl~~s 345 (639)
T KOG1130|consen 338 AELHLRSS 345 (639)
T ss_pred HHHHHHHH
Confidence 55444443
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.61 E-value=1.2e-13 Score=113.84 Aligned_cols=152 Identities=10% Similarity=0.096 Sum_probs=126.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChh
Q 010276 221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (514)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (514)
-+-.|+..|+++......++.. +|.. -+...++.++++..++++++.+|++.+.|..+|.++...|+++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 3567888899888655543321 2211 1112667788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHH-hh-cC--hhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHh
Q 010276 301 KLSKLVHDLLSIDPSRPEVFVALSVLW-ER-KD--ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (514)
Q Consensus 301 ~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 376 (514)
+|+..|++++...|+++.++..+|.++ .. |+ .++|...++++++.+|+++.++..+|..+...|++++|+..|+++
T Consensus 91 ~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 91 NALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999864 44 66 489999999999999999999999999999999999999999999
Q ss_pred HhhcCCh
Q 010276 377 QELRPDL 383 (514)
Q Consensus 377 ~~~~~~~ 383 (514)
++..|..
T Consensus 171 L~l~~~~ 177 (198)
T PRK10370 171 LDLNSPR 177 (198)
T ss_pred HhhCCCC
Confidence 9988775
No 107
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.60 E-value=4.7e-10 Score=102.42 Aligned_cols=280 Identities=11% Similarity=0.070 Sum_probs=213.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC----------------
Q 010276 222 AQCCIASNDYKGGLELFAELLQRFPNN----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY---------------- 281 (514)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---------------- 281 (514)
|..|...|+.+.|..+|+++.+..-.. ..+|...|..-.+..+++.|+++.+++......
T Consensus 394 aklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl 473 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL 473 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH
Confidence 899999999999999999998754322 578888899999999999999999998764211
Q ss_pred --CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcc--cCchhHHHH
Q 010276 282 --IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDE--RHIPGYIMK 356 (514)
Q Consensus 282 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~--~~~~~~~~~ 356 (514)
+...|..++......|-++.....|++++++.--.|....+.|..+.. .-++++.+.|++.+.+.| ...++|...
T Consensus 474 hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tY 553 (835)
T KOG2047|consen 474 HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTY 553 (835)
T ss_pred HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHH
Confidence 145788889999999999999999999999999999999999998888 677899999999988764 444555433
Q ss_pred ---HHHHHhcCChHHHHHHHHHhHhhcCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 010276 357 ---GNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN 430 (514)
Q Consensus 357 ---~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 430 (514)
...-+.....+.|..+|+++++..|.. ..+...+..-.+-|-...|+.+|+++-..-+.. -.+.+-.+|...
T Consensus 554 Ltkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a--~~l~myni~I~k 631 (835)
T KOG2047|consen 554 LTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEA--QRLDMYNIYIKK 631 (835)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHH
Confidence 222334457899999999999998864 346666788888899999999999987654331 111122222211
Q ss_pred ---CCChHHHHHHHHHHHhhCCCCh--HHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhccHH
Q 010276 431 ---ASGREKAKKFYESALRLEPGYL--GAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLHVKLAQVFAATNMLQ 502 (514)
Q Consensus 431 ---~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 502 (514)
.=-...-...|++|++.-|+.. ......+.+..+.|..+.|..+|..+-++.+.. ..|...-..-.+.|+-+
T Consensus 632 aae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 632 AAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 0123456788999999877653 355678899999999999999999998876432 46766677777788843
Q ss_pred H
Q 010276 503 E 503 (514)
Q Consensus 503 ~ 503 (514)
.
T Consensus 712 T 712 (835)
T KOG2047|consen 712 T 712 (835)
T ss_pred H
Confidence 3
No 108
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.60 E-value=1.2e-12 Score=127.82 Aligned_cols=283 Identities=12% Similarity=0.078 Sum_probs=184.2
Q ss_pred CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHh
Q 010276 138 ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLH 217 (514)
Q Consensus 138 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (514)
|.+..++..++..+...|++++|+...+..++..|+....+..++-++...++...+...
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------------- 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------------- 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--------------------
Confidence 444555555555555555555555555555555555555554444433333222111000
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 010276 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (514)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (514)
..+.......++ .+++.+-..+...|.+..+++.+|.||-++|+.++|...++++++.+|+++.++..+|..+...
T Consensus 88 --~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 88 --NLIDSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE- 163 (906)
T ss_pred --hhhhhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-
Confidence 012222222344 5555666666667888889999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhH
Q 010276 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377 (514)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 377 (514)
+.++|..++.+++.. .+..+++..+.+++.+.+..+|.+.+.+..+-......-.+..+.
T Consensus 164 dL~KA~~m~~KAV~~-------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~------- 223 (906)
T PRK14720 164 DKEKAITYLKKAIYR-------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLV------- 223 (906)
T ss_pred hHHHHHHHHHHHHHH-------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhH-------
Confidence 999999999998874 223378889999999999999988776544433322221122222
Q ss_pred hhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHH
Q 010276 378 ELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALA 457 (514)
Q Consensus 378 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 457 (514)
..+.-+-..|...++|++++.+++.+++.+|.+..+...++.+|... |.. ...|+..+++..
T Consensus 224 ------~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k---Y~~-~~~~ee~l~~s~-------- 285 (906)
T PRK14720 224 ------GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEK---YKD-HSLLEDYLKMSD-------- 285 (906)
T ss_pred ------HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH---ccC-cchHHHHHHHhc--------
Confidence 23445566777888999999999999999999999999999998854 222 334444443321
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276 458 LAELHVIEGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (514)
+--....+..|+..|++.+...+.+
T Consensus 286 ---l~~~~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 286 ---IGNNRKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred ---cccCCccHHHHHHHHHHHeeecCCC
Confidence 0011134567777777777776654
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.58 E-value=1.9e-13 Score=125.95 Aligned_cols=221 Identities=17% Similarity=0.132 Sum_probs=173.2
Q ss_pred CCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHH
Q 010276 246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (514)
Q Consensus 246 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (514)
|........++..+...|-...|+..|++. ..|.....+|...|+..+|..+..+-++ .|+++..|..+|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 334456667888888888888888888874 4566677888888888888888888887 7777778877777
Q ss_pred HHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHH
Q 010276 326 LWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEAL 403 (514)
Q Consensus 326 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~ 403 (514)
+... .-+++|.++.+.. +..+...+|......++|+++.++++..++++|-. ..|+.+|.+..+.+++..|.
T Consensus 466 v~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred hccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 6655 3444555554432 23355666677777888888888888888888877 78888888888888888888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhC
Q 010276 404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW 482 (514)
Q Consensus 404 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (514)
+.|..++...|++..+|.+++..|... ++..+|...++++++.+-++..+|.+...+....|.+++|++.+.+.+.+.
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~-~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRL-KKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHH-hhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 888888888888888888888888888 888888888888888887778888888888888888888888888887654
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.58 E-value=1.2e-13 Score=127.32 Aligned_cols=223 Identities=21% Similarity=0.172 Sum_probs=199.3
Q ss_pred cCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHH
Q 010276 209 HLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288 (514)
Q Consensus 209 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 288 (514)
..-|..|.....++..+...|-...|+.++++. +.|-....||...|+..+|.....+-++ .|.++..|..
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~ 462 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCL 462 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHH
Confidence 345677888889999999999999999999986 6777889999999999999999999998 6677888888
Q ss_pred HHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChH
Q 010276 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE 367 (514)
Q Consensus 289 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (514)
+|++.....-+++|.++.+... ..+...+|..... +++.++.+.++..++++|-....|+.+|.+..+.++++
T Consensus 463 LGDv~~d~s~yEkawElsn~~s------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYIS------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhh------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 8888888887888887776543 3355666664444 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 010276 368 AAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR 446 (514)
Q Consensus 368 ~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~ 446 (514)
.|...|...+..+|++ .+|++++.+|.+.++-.+|...++++++.+-++..+|-+.-.+.... |.+++|++.+.+.+.
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdv-ge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDV-GEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhc-ccHHHHHHHHHHHHH
Confidence 9999999999999999 89999999999999999999999999999988999999999999998 999999999999887
Q ss_pred h
Q 010276 447 L 447 (514)
Q Consensus 447 ~ 447 (514)
+
T Consensus 616 ~ 616 (777)
T KOG1128|consen 616 L 616 (777)
T ss_pred h
Confidence 5
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.58 E-value=6.3e-13 Score=129.05 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 010276 334 GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA 412 (514)
Q Consensus 334 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 412 (514)
+++.-........|.+++++..+|.+....|++++|...++.+++..|++ .++..++.++.+.+++++|+..+++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 44444444555678888999999999999999999999999999999998 78899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276 413 MPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD 484 (514)
Q Consensus 413 ~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 484 (514)
.|+++..++.+|.++... |++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+
T Consensus 150 ~p~~~~~~~~~a~~l~~~-g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 150 GSSSAREILLEAKSWDEI-GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred CCCCHHHHHHHHHHHHHh-cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 999999999999999998 99999999999999988999999999999999999999999999999988754
No 112
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.57 E-value=1.3e-13 Score=118.43 Aligned_cols=258 Identities=17% Similarity=0.128 Sum_probs=202.8
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhCChhHHHHHHH------HHhhcCCCChHHHHHHH
Q 010276 255 MAKVDAIIGKNDEAILNFEKVRSIDPYIM----TYMDEYAMLLKVKCDYSKLSKLVH------DLLSIDPSRPEVFVALS 324 (514)
Q Consensus 255 la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~------~~~~~~~~~~~~~~~l~ 324 (514)
-|.-+++.|+....+..|+.+++...++. ..+..+|..|...++|++|+++-. +.+.-.-......-++|
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 36678899999999999999999887763 467889999999999999998743 33332333455667888
Q ss_pred HHHhh-cChhHHHHHHHHHHHhccc------CchhHHHHHHHHHhcCC--------------------hHHHHHHHHHhH
Q 010276 325 VLWER-KDERGALSYAEKSIRIDER------HIPGYIMKGNLLLSMKR--------------------PEAAVIAFRGAQ 377 (514)
Q Consensus 325 ~~~~~-~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~~~ 377 (514)
+.+.. |.|++|+.+..+-+.+... ...+++++|.+|...|+ ++.|.++|..-+
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 88877 9999999998887765322 35689999999988775 345556665555
Q ss_pred hhcCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 010276 378 ELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESA 444 (514)
Q Consensus 378 ~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a 444 (514)
++.... .++-++|..|+-.|+|+.|+..-+.-+.+..+. -.++.++|.++.-. |+++.|+++|++.
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl-g~fe~A~ehYK~t 261 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL-GNFELAIEHYKLT 261 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh-cccHhHHHHHHHH
Confidence 543321 357889999999999999999888777654332 46788999999998 9999999999987
Q ss_pred Hhh----CCCC--hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC-------chHHHHHHHHHHHhccHHHHHHHHHHH
Q 010276 445 LRL----EPGY--LGAALALAELHVIEGRNGDAVSLLERYLKDWAD-------DSLHVKLAQVFAATNMLQEALSHYEAA 511 (514)
Q Consensus 445 ~~~----~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a 511 (514)
+.+ .... ....+.||..|.-..++++|+.++.+-+.+..+ -.+++.||..+..+|..++|+.+.+..
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 654 2222 457789999999999999999999998876532 258999999999999999999988877
Q ss_pred hc
Q 010276 512 LR 513 (514)
Q Consensus 512 l~ 513 (514)
++
T Consensus 342 l~ 343 (639)
T KOG1130|consen 342 LR 343 (639)
T ss_pred HH
Confidence 64
No 113
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.57 E-value=1.6e-13 Score=119.70 Aligned_cols=257 Identities=17% Similarity=0.154 Sum_probs=189.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChh
Q 010276 222 AQCCIASNDYKGGLELFAELLQRFPN-NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (514)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (514)
.+.++-.|+|..++.-++ ....+|. ..+....+.+++..+|+++..+..... ..+....+...++..+...++.+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchH
Confidence 667788899999998777 3333332 356777889999999998876654433 22334456667777766656777
Q ss_pred HHHHHHHHHhhcCCC--ChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhH
Q 010276 301 KLSKLVHDLLSIDPS--RPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377 (514)
Q Consensus 301 ~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 377 (514)
.++..++..+..... ++......|.++.. |++++|++.+.+. .+.+.......++...++++.|.+.++.+.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777766543322 34444455566665 9999999888764 456777788899999999999999999998
Q ss_pred hhcCCh-HHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHH
Q 010276 378 ELRPDL-RSYQGLVHSYLQFS--KVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA 454 (514)
Q Consensus 378 ~~~~~~-~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 454 (514)
+.+.+. -.....+++.+..| ++.+|...|++.....|.++..++.++.++..+ |++++|...+++++..+|+++++
T Consensus 159 ~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~-~~~~eAe~~L~~al~~~~~~~d~ 237 (290)
T PF04733_consen 159 QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL-GHYEEAEELLEEALEKDPNDPDT 237 (290)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC-T-HHHHHHHHHHHCCC-CCHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhccCCHHH
Confidence 877665 22333344444444 699999999999888889999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHcCCh-hHHHHHHHHHHhhCCCchHH
Q 010276 455 ALALAELHVIEGRN-GDAVSLLERYLKDWADDSLH 488 (514)
Q Consensus 455 ~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~ 488 (514)
+.+++.+....|+. +.+.+++.+.....|+++..
T Consensus 238 LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 238 LANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 99999999999999 66777888888888887643
No 114
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.56 E-value=3.4e-13 Score=117.61 Aligned_cols=264 Identities=17% Similarity=0.115 Sum_probs=160.6
Q ss_pred CCchHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhh
Q 010276 1 MEVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQN 80 (514)
Q Consensus 1 ~~~~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 80 (514)
|..-+-.++..+-.|.|..++.-++ + . ..++....+..+.+.+++...|+++..+...... .+....+.
T Consensus 1 ~~deLf~vrn~fy~G~Y~~~i~e~~-~-~------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av 69 (290)
T PF04733_consen 1 MSDELFTVRNQFYLGNYQQCINEAS-L-K------SFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAV 69 (290)
T ss_dssp ---TTHHHHHHHCTT-HHHHCHHHH-C-H------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHH
T ss_pred CchHHHHHHHHHHhhhHHHHHHHhh-c-c------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHH
Confidence 3444556788888999999886655 2 1 1234567788889999999999988766544331 11112222
Q ss_pred hhhhhhhhhccccCCCCccc----cc-ccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcC
Q 010276 81 STSSRSSLSTSNRSSSPNSF----NV-SAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSR 155 (514)
Q Consensus 81 ~~~~~~~~~~~~~~~a~~~~----~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 155 (514)
..++......++.+.....+ .. ....++.+....|.++...|++++|++.+.+. .+.+.......++...+
T Consensus 70 ~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~ 145 (290)
T PF04733_consen 70 RLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMN 145 (290)
T ss_dssp HHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcC
Confidence 22222222111222222111 01 11123445566677777778888887776653 55677777777888888
Q ss_pred ChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhc--CHHH
Q 010276 156 HNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASN--DYKG 233 (514)
Q Consensus 156 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~ 233 (514)
+++.|.+.++.+-+.+.+..-... ..+.+.+..| .+.+
T Consensus 146 R~dlA~k~l~~~~~~~eD~~l~qL----------------------------------------a~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 146 RPDLAEKELKNMQQIDEDSILTQL----------------------------------------AEAWVNLATGGEKYQD 185 (290)
T ss_dssp -HHHHHHHHHHHHCCSCCHHHHHH----------------------------------------HHHHHHHHHTTTCCCH
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHH----------------------------------------HHHHHHHHhCchhHHH
Confidence 888888888777766655433222 1233444433 5778
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh-hHHHHHHHHHhhc
Q 010276 234 GLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY-SKLSKLVHDLLSI 312 (514)
Q Consensus 234 A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~ 312 (514)
|..+|+++.+..|.++.++..++.+++.+|++++|.+.+.+++..+|.+++++.+++.+....|+. +.+.+++.++...
T Consensus 186 A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 186 AFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 888888877777777777788888888888888888888888888888888888888877777777 4556666776667
Q ss_pred CCCChHH
Q 010276 313 DPSRPEV 319 (514)
Q Consensus 313 ~~~~~~~ 319 (514)
+|+++.+
T Consensus 266 ~p~h~~~ 272 (290)
T PF04733_consen 266 NPNHPLV 272 (290)
T ss_dssp TTTSHHH
T ss_pred CCCChHH
Confidence 7777654
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.54 E-value=8.7e-13 Score=128.09 Aligned_cols=151 Identities=13% Similarity=0.064 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhh
Q 010276 232 KGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS 311 (514)
Q Consensus 232 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 311 (514)
.+++.-........|.+++++..+|.+....|.+++|..+++.+++..|++..++..++.++.+.+++++|...+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 34444445555678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCC
Q 010276 312 IDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD 382 (514)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 382 (514)
..|+++..++.+|.++.. |++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 999999999999999988 99999999999999999999999999999999999999999999999988654
No 116
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.53 E-value=5.5e-13 Score=104.23 Aligned_cols=114 Identities=16% Similarity=0.103 Sum_probs=75.3
Q ss_pred HHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 010276 372 AFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450 (514)
Q Consensus 372 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~ 450 (514)
.+++++..+|++ .....+|..+...|++++|...+++++..+|+++.++..+|.++... |++++|+..++++++.+|+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML-KEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCC
Confidence 455666666665 55666666666666666666666666666666666666666666666 6666666666666666666
Q ss_pred ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276 451 YLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS 486 (514)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 486 (514)
++..++.+|.++...|++++|+..++++++..|++.
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 666666666666666666666666666666666653
No 117
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=4.4e-12 Score=104.55 Aligned_cols=347 Identities=13% Similarity=0.053 Sum_probs=247.6
Q ss_pred HHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHh
Q 010276 118 HFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFA 196 (514)
Q Consensus 118 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 196 (514)
+++..+|.+|++++..- ...|.+...+..+|.||+...++..|..+|++.-...|......
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr------------------ 81 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR------------------ 81 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH------------------
Confidence 46778999999999885 44477889999999999999999999999999998888643333
Q ss_pred ccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 010276 197 QTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVR 276 (514)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 276 (514)
+..|..+++.+.+.+|+.+...+.+...-.......-+-+.+..+++..+....++.-
T Consensus 82 ----------------------lY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp 139 (459)
T KOG4340|consen 82 ----------------------LYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP 139 (459)
T ss_pred ----------------------HHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc
Confidence 2338889999999999999887754321223455556777788888888877776542
Q ss_pred hhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHh----cccC--
Q 010276 277 SIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRI----DERH-- 349 (514)
Q Consensus 277 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~----~~~~-- 349 (514)
. .+........|.+.++.|++++|.+-|+.+++...-+|..-++++.+..+ +++..|+++....++. .|..
T Consensus 140 ~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 140 S--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred C--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 1 24577888999999999999999999999999999999999999998777 9999999988887764 3431
Q ss_pred -----------------------chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCC---hHHHHHHHHHHHhcCCHHHHH
Q 010276 350 -----------------------IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD---LRSYQGLVHSYLQFSKVKEAL 403 (514)
Q Consensus 350 -----------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~ 403 (514)
.+++...+.++++.|+++.|.+.+..+--.... ...+.+++..- ..+++.+..
T Consensus 218 Gm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~ 296 (459)
T KOG4340|consen 218 GMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGF 296 (459)
T ss_pred cceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccH
Confidence 123456777888889998888776554222111 12355555432 345677777
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCh-----HHHHHHHHHHH-HcCChhHHHHHHHH
Q 010276 404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL-----GAALALAELHV-IEGRNGDAVSLLER 477 (514)
Q Consensus 404 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~la~~~~-~~g~~~~A~~~~~~ 477 (514)
.-++-.+.++|-.++.+.++-.+|.+. .-++.|...+- -+|+.. +..+.|-..+. ..-..++|.+-+..
T Consensus 297 ~KLqFLL~~nPfP~ETFANlLllyCKN-eyf~lAADvLA----En~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~ 371 (459)
T KOG4340|consen 297 EKLQFLLQQNPFPPETFANLLLLYCKN-EYFDLAADVLA----ENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDG 371 (459)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHhhh-HHHhHHHHHHh----hCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 888888888998788888888888876 66666665543 344432 23334433333 34567788777776
Q ss_pred HHhhC-----------------CCc------------------hHHHHHHHHHHHhccHHHHHHHHHHHh
Q 010276 478 YLKDW-----------------ADD------------------SLHVKLAQVFAATNMLQEALSHYEAAL 512 (514)
Q Consensus 478 ~~~~~-----------------~~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~al 512 (514)
.-... .++ ++....+.+|+...++..+.+.|+...
T Consensus 372 La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sv 441 (459)
T KOG4340|consen 372 LAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYLPVLMAQAKIYWNLEDYPMVEKIFRKSV 441 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 43211 110 345556777777777777777777654
No 118
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.52 E-value=5.5e-13 Score=104.25 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=104.3
Q ss_pred HHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 010276 337 SYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ 415 (514)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 415 (514)
..+++++..+|++......+|..+...|++++|...+++++..+|.+ ..+..+|.++...|++++|...+++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45778888899888888899999999999999999999999988887 78889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHH
Q 010276 416 SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA 454 (514)
Q Consensus 416 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 454 (514)
++..++.+|.++... |++++|+..|+++++.+|++...
T Consensus 84 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 84 DPRPYFHAAECLLAL-GEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhccccchH
Confidence 999999999999998 99999999999999999887653
No 119
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=6.5e-13 Score=110.17 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=104.8
Q ss_pred HHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 010276 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLK 294 (514)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 294 (514)
...+-..|.-++..++|.+|+..|.+++..+|.++..+..+|.+|.++|.++.|++.++.++.++|....+|..+|.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 33445678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh
Q 010276 295 VKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER 329 (514)
Q Consensus 295 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (514)
.+|++++|++.|+++++++|++...+..|..+-..
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999887777665444
No 120
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.48 E-value=2e-11 Score=104.03 Aligned_cols=186 Identities=12% Similarity=0.116 Sum_probs=140.1
Q ss_pred hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHH
Q 010276 39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCH 118 (514)
Q Consensus 39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 118 (514)
+...++.++..|..++..|+|++|+..|++++..+|..+ -...+.+.+|.++
T Consensus 28 ~~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~----------------------------~a~~a~l~la~ay 79 (243)
T PRK10866 28 PDNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP----------------------------YSQQVQLDLIYAY 79 (243)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh----------------------------HHHHHHHHHHHHH
Confidence 345678899999999999999999999999999998664 2345678999999
Q ss_pred HhcCCHHHHHHHHhcC----CCCCccHHHHHHHHHHHHhcC---------------C---hhhHHHHHHHHHhcCCCCHH
Q 010276 119 FALGETKAAIVEMEGI----PSKARNLQMSLLMAKLYRNSR---------------H---NRGAVACYKECLRHCPFFIE 176 (514)
Q Consensus 119 ~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~g---------------~---~~~A~~~~~~~l~~~p~~~~ 176 (514)
++.+++++|+..+++. +..|..+.+++.+|.++...+ + ..+|+..|++.++..|++..
T Consensus 80 y~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y 159 (243)
T PRK10866 80 YKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY 159 (243)
T ss_pred HhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh
Confidence 9999999999999884 555778889999998865443 1 35788999999999998866
Q ss_pred HHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHH
Q 010276 177 AITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILL 253 (514)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~ 253 (514)
+......+..-. .......+..|..|.+.|.|.-|+..++.+++..|+. .+++.
T Consensus 160 a~~A~~rl~~l~-----------------------~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~ 216 (243)
T PRK10866 160 TTDATKRLVFLK-----------------------DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALP 216 (243)
T ss_pred HHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHH
Confidence 543322111000 0001112355888888888888888888888887765 56788
Q ss_pred HHHHHHHHhCChHHHHHHHHHH
Q 010276 254 EMAKVDAIIGKNDEAILNFEKV 275 (514)
Q Consensus 254 ~la~~~~~~~~~~~A~~~~~~~ 275 (514)
.++..|...|..++|.+.....
T Consensus 217 ~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 217 LMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCChHHHHHHHHHH
Confidence 8888888888888887766543
No 121
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.48 E-value=2.6e-12 Score=97.60 Aligned_cols=102 Identities=12% Similarity=-0.024 Sum_probs=87.2
Q ss_pred CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHH
Q 010276 381 PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALA 459 (514)
Q Consensus 381 ~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 459 (514)
++. +..+.+|..+...|++++|...|+-+...+|.+...|+++|.++..+ |++++|+..|.+++.++|+++.+++++|
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~-g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ-KHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 444 66788888888888888888888888888888888888888888888 8888888888888888888888888888
Q ss_pred HHHHHcCChhHHHHHHHHHHhhCC
Q 010276 460 ELHVIEGRNGDAVSLLERYLKDWA 483 (514)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~~~~~~~ 483 (514)
.++...|+.+.|.+.|+.++....
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhc
Confidence 888888888888888888888763
No 122
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.46 E-value=8.4e-12 Score=103.97 Aligned_cols=179 Identities=18% Similarity=0.241 Sum_probs=130.7
Q ss_pred hhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHH
Q 010276 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF 119 (514)
Q Consensus 40 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 119 (514)
...++.++..|..++..|+|.+|+..|++++...|.++ -.+.+.+.+|.+++
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~----------------------------~a~~A~l~la~a~y 53 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP----------------------------YAPQAQLMLAYAYY 53 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST----------------------------THHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh----------------------------HHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999766 45788999999999
Q ss_pred hcCCHHHHHHHHhcC----CCCCccHHHHHHHHHHHHhcC-----------ChhhHHHHHHHHHhcCCCCHHHHHHHHHh
Q 010276 120 ALGETKAAIVEMEGI----PSKARNLQMSLLMAKLYRNSR-----------HNRGAVACYKECLRHCPFFIEAITALAEL 184 (514)
Q Consensus 120 ~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 184 (514)
..|++++|+..++.. +..|..+.+++.+|.++.... ...+|+..|+..++..|++..+......+
T Consensus 54 ~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l 133 (203)
T PF13525_consen 54 KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRL 133 (203)
T ss_dssp HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHH
Confidence 999999999998884 555677889999999876653 34589999999999999876554332111
Q ss_pred ccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHH
Q 010276 185 GATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAI 261 (514)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~ 261 (514)
..- ........+..|..|++.|.+..|+..++.+++..|+. .+++..++.++..
T Consensus 134 ~~l-----------------------~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~ 190 (203)
T PF13525_consen 134 AEL-----------------------RNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYK 190 (203)
T ss_dssp HHH-----------------------HHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred HHH-----------------------HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 100 00111122455888888888888888888888888877 4577788888888
Q ss_pred hCChHHHH
Q 010276 262 IGKNDEAI 269 (514)
Q Consensus 262 ~~~~~~A~ 269 (514)
+|..+.|.
T Consensus 191 l~~~~~a~ 198 (203)
T PF13525_consen 191 LGLKQAAD 198 (203)
T ss_dssp TT-HHHHH
T ss_pred hCChHHHH
Confidence 88877443
No 123
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.6e-12 Score=107.85 Aligned_cols=105 Identities=20% Similarity=0.230 Sum_probs=79.0
Q ss_pred cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 010276 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAARE 408 (514)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (514)
++|.+|+..|.++|.++|.++..|.+++.+|.++|.++.|++..+.++.++|.+ .+|..||.+|..+|++++|++.|++
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK 174 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence 777777777777777777777777777777777777777777777777777776 7777777777777777777777777
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCChH
Q 010276 409 AMKAMPQSAKALKLVGDVHASNASGRE 435 (514)
Q Consensus 409 ~~~~~p~~~~~~~~l~~~~~~~~~~~~ 435 (514)
+++++|++...+.++..+-... +...
T Consensus 175 aLeldP~Ne~~K~nL~~Ae~~l-~e~~ 200 (304)
T KOG0553|consen 175 ALELDPDNESYKSNLKIAEQKL-NEPK 200 (304)
T ss_pred hhccCCCcHHHHHHHHHHHHHh-cCCC
Confidence 7777777777776666665555 4443
No 124
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.42 E-value=1e-11 Score=94.34 Aligned_cols=100 Identities=12% Similarity=0.054 Sum_probs=49.5
Q ss_pred CCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHH
Q 010276 246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (514)
Q Consensus 246 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (514)
++..+..+.+|..++..|++++|...|+.+...+|.+...|+.+|.++..+|++++|+..|.+++.++|++|..+.++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 44444555555555555555555555555555555555555555555555555555555555444444444444444444
Q ss_pred HHhh-cChhHHHHHHHHHHHh
Q 010276 326 LWER-KDERGALSYAEKSIRI 345 (514)
Q Consensus 326 ~~~~-~~~~~A~~~~~~~~~~ 345 (514)
++.. |+.+.|.+.|+.++..
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 4444 4444444444444443
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.42 E-value=2.6e-10 Score=101.25 Aligned_cols=124 Identities=14% Similarity=0.154 Sum_probs=64.5
Q ss_pred CCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHH
Q 010276 246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (514)
Q Consensus 246 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (514)
|....+++..+..++..|++++|...+...+...|+|+..+...+.++...|+..+|.+.+++++..+|+.+..+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHH
Q 010276 326 LWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAA 369 (514)
Q Consensus 326 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 369 (514)
.+.. |++.+|+..++..+..+|+++..|..++..|..+|+..+|
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence 4444 4455555555555555555555555555555555544443
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.42 E-value=2.6e-10 Score=101.26 Aligned_cols=153 Identities=20% Similarity=0.200 Sum_probs=137.7
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 010276 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (514)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (514)
..|-.|..++..|++++|+..++.++...|+|+..+...+.++...|+..+|.+.+++++..+|..+..+..+|..+.+.
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Confidence 44566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHH
Q 010276 297 CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRG 375 (514)
Q Consensus 297 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 375 (514)
|++.+|+..++..+..+|+++..|..++..|.. |+..++. ...+..+...|++++|+..+..
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~-----------------~A~AE~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL-----------------LARAEGYALAGRLEQAIIFLMR 450 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH-----------------HHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999887 7655544 4557788889999999999999
Q ss_pred hHhhc-CChHHH
Q 010276 376 AQELR-PDLRSY 386 (514)
Q Consensus 376 ~~~~~-~~~~~~ 386 (514)
+.+.. .+...|
T Consensus 451 A~~~~~~~~~~~ 462 (484)
T COG4783 451 ASQQVKLGFPDW 462 (484)
T ss_pred HHHhccCCcHHH
Confidence 98775 333333
No 127
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.36 E-value=1.6e-10 Score=96.26 Aligned_cols=157 Identities=19% Similarity=0.192 Sum_probs=105.1
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHH
Q 010276 350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALKL 422 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~ 422 (514)
+..++..|..++..|++.+|+..|++++...|.. .+.+.+|.++...|++++|+..+++.+...|++ +.+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 3455666666777777777777777776666653 456666777777777777777777777766665 345666
Q ss_pred HHHHHHhcC----------CChHHHHHHHHHHHhhCCCChH-----------------HHHHHHHHHHHcCChhHHHHHH
Q 010276 423 VGDVHASNA----------SGREKAKKFYESALRLEPGYLG-----------------AALALAELHVIEGRNGDAVSLL 475 (514)
Q Consensus 423 l~~~~~~~~----------~~~~~A~~~~~~a~~~~~~~~~-----------------~~~~la~~~~~~g~~~~A~~~~ 475 (514)
+|.++.... +...+|+..|+..++..|+++. --+.+|..|.+.|.+..|+..+
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~ 164 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRF 164 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 666654320 2234677777777777777632 2245788899999999999999
Q ss_pred HHHHhhCCCc----hHHHHHHHHHHHhccHHHHHH
Q 010276 476 ERYLKDWADD----SLHVKLAQVFAATNMLQEALS 506 (514)
Q Consensus 476 ~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~ 506 (514)
+.+++..|+. +++..++..|.++|..+.|..
T Consensus 165 ~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 165 QYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 9999999986 488999999999999885543
No 128
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.34 E-value=4.5e-10 Score=95.75 Aligned_cols=176 Identities=13% Similarity=0.015 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhH---HHHHHHHHhcCChHHHHHHHHHhHhhcCCh----HHHHH
Q 010276 317 PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGY---IMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQG 388 (514)
Q Consensus 317 ~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~ 388 (514)
+..++..|..... |++++|+..|++++...|..+.+. +.+|.++++.+++++|+..+++.++..|++ .+++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 3344444443333 555555555555555555543332 455555555555555555555555555543 23444
Q ss_pred HHHHHHhcCC------------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 010276 389 LVHSYLQFSK------------------VKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450 (514)
Q Consensus 389 l~~~~~~~~~------------------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~ 450 (514)
+|.++...++ ..+|+..+++.++..|++..+ .+|...+..+-. .
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya---------------~~A~~rl~~l~~---~ 173 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT---------------TDATKRLVFLKD---R 173 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH---------------HHHHHHHHHHHH---H
Confidence 4544433320 123444444455544443211 111110000000 0
Q ss_pred ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc----hHHHHHHHHHHHhccHHHHHHHHHH
Q 010276 451 YLGAALALAELHVIEGRNGDAVSLLERYLKDWADD----SLHVKLAQVFAATNMLQEALSHYEA 510 (514)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 510 (514)
-..--+..|..|.+.|.+..|+.-++.+++..|+. ++++.++..|..+|..++|......
T Consensus 174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 01122357888899999999999999999999875 5888999999999999999876643
No 129
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.33 E-value=1.2e-09 Score=92.87 Aligned_cols=292 Identities=18% Similarity=0.181 Sum_probs=221.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHHhh----CCC--CHHHHHHH
Q 010276 219 YVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSI----DPY--IMTYMDEY 289 (514)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~l 289 (514)
...|.-++...++.+|+....+.+..-.+. ...+-.+..++.++|.+++++..--..++. ... ..+++.++
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL 89 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788889999999999999988754433 334555677888889988877664443332 221 24678889
Q ss_pred HHHHHHhCChhHHHHHHHHHhhcCCCCh-----HHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCc------hhHHHHH
Q 010276 290 AMLLKVKCDYSKLSKLVHDLLSIDPSRP-----EVFVALSVLWER-KDERGALSYAEKSIRIDERHI------PGYIMKG 357 (514)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~------~~~~~~~ 357 (514)
+..+....++.+++.+-+..+......+ .+...++..+.. +.++++++.|+++++....+. .++..+|
T Consensus 90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg 169 (518)
T KOG1941|consen 90 ARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLG 169 (518)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHH
Confidence 9999999999999999888887654433 455567776666 899999999999998754433 3578899
Q ss_pred HHHHhcCChHHHHHHHHHhHhhcCCh-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCHHHH
Q 010276 358 NLLLSMKRPEAAVIAFRGAQELRPDL-----------RSYQGLVHSYLQFSKVKEALYAAREAMKAM------PQSAKAL 420 (514)
Q Consensus 358 ~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~ 420 (514)
.++....++++|.-+..++.++..+. -+.+.++..+..+|+.-.|.++.+++.++. +-.....
T Consensus 170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 99999999999999999998774322 246788999999999999999999987753 2335667
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCChh-----HHHHHHHHHHhhCCCc----
Q 010276 421 KLVGDVHASNASGREKAKKFYESALRLEPG------YLGAALALAELHVIEGRNG-----DAVSLLERYLKDWADD---- 485 (514)
Q Consensus 421 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~-----~A~~~~~~~~~~~~~~---- 485 (514)
..+|.+|... |+.+.|..-|+++...... ..+++...+.++....-.. .|++.-++++++...-
T Consensus 250 ~~~aDIyR~~-gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~ 328 (518)
T KOG1941|consen 250 LCFADIYRSR-GDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKL 328 (518)
T ss_pred HHHHHHHHhc-ccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhH
Confidence 8899999999 9999999999999875321 2446667777766554444 4888888888876442
Q ss_pred ---hHHHHHHHHHHHhccHHHHHHHHHHH
Q 010276 486 ---SLHVKLAQVFAATNMLQEALSHYEAA 511 (514)
Q Consensus 486 ---~~~~~l~~~~~~~g~~~~A~~~~~~a 511 (514)
..+..++.+|..+|.-++=...+.++
T Consensus 329 ~vlK~hcrla~iYrs~gl~d~~~~h~~ra 357 (518)
T KOG1941|consen 329 SVLKLHCRLASIYRSKGLQDELRAHVVRA 357 (518)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 58888999999999888777776665
No 130
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.31 E-value=5.9e-10 Score=87.81 Aligned_cols=212 Identities=14% Similarity=0.050 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHh
Q 010276 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS 362 (514)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (514)
..++..|..|-..|-+.-|.-.|.+++.+.|+-|+++..+|..+.. |+++.|.+.|+..++++|....+..++|..++.
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY 145 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 145 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence 3455556666777777777777777777788888888888777666 888888888888888888887788888888888
Q ss_pred cCChHHHHHHHHHhHhhcCChH---HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHH
Q 010276 363 MKRPEAAVIAFRGAQELRPDLR---SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKK 439 (514)
Q Consensus 363 ~~~~~~A~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~ 439 (514)
-|+++-|.+.+.+-.+.+|+++ .|..+. ...-++.+|..-+.+-.+...+.-..|...+..+ |+..+ ..
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL----gkiS~-e~ 217 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL----GKISE-ET 217 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH----hhccH-HH
Confidence 8888888888888777777763 233332 2233566665544333332222233333333222 22111 12
Q ss_pred HHHHHHhhCCCC-------hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc----h-HHHHHHHHHHHhccHHH
Q 010276 440 FYESALRLEPGY-------LGAALALAELHVIEGRNGDAVSLLERYLKDWADD----S-LHVKLAQVFAATNMLQE 503 (514)
Q Consensus 440 ~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~-~~~~l~~~~~~~g~~~~ 503 (514)
.++++.....++ .++++.+|..+...|+.++|...|+-++..+--+ . +.+.++.+.....+..+
T Consensus 218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~~l~~ 293 (297)
T COG4785 218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQDDLAE 293 (297)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccchhhh
Confidence 233333322222 4577888888888888888888888887755333 2 55556655555444433
No 131
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.31 E-value=7.3e-11 Score=107.24 Aligned_cols=109 Identities=21% Similarity=0.172 Sum_probs=62.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCC
Q 010276 355 MKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASG 433 (514)
Q Consensus 355 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 433 (514)
..|...+..|++++|+..|+++++.+|++ .++..+|.++...|++++|+..+++++.++|+++.+++.+|.++... |+
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l-g~ 85 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL-EE 85 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh-CC
Confidence 44555555555555555555555555555 45555555555555555555555555555555555555555555555 55
Q ss_pred hHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 010276 434 REKAKKFYESALRLEPGYLGAALALAELHVI 464 (514)
Q Consensus 434 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 464 (514)
+++|+..|+++++++|+++.+...++.+...
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5555555555555555555555555544433
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.31 E-value=7.7e-11 Score=92.67 Aligned_cols=132 Identities=18% Similarity=0.197 Sum_probs=107.8
Q ss_pred hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhh
Q 010276 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (514)
Q Consensus 4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (514)
.++.+...+..++...+....+.+... ..+.+....+.+.+|..++..|++++|+..|+.++...|+..
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~------ 82 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE------ 82 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH------
Confidence 345555666788888887767767662 222345567889999999999999999999999999765322
Q ss_pred hhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHH
Q 010276 84 SRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVAC 163 (514)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 163 (514)
-...+.+++|.+++..|++++|+..++.+...+..+.++..+|.++...|++++|+..
T Consensus 83 ----------------------l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~ 140 (145)
T PF09976_consen 83 ----------------------LKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAA 140 (145)
T ss_pred ----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2355788999999999999999999999877778888999999999999999999999
Q ss_pred HHHHH
Q 010276 164 YKECL 168 (514)
Q Consensus 164 ~~~~l 168 (514)
|++++
T Consensus 141 y~~Al 145 (145)
T PF09976_consen 141 YQKAL 145 (145)
T ss_pred HHHhC
Confidence 99874
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.29 E-value=3.5e-07 Score=87.55 Aligned_cols=227 Identities=15% Similarity=0.112 Sum_probs=146.7
Q ss_pred HhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHh
Q 010276 53 LFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEME 132 (514)
Q Consensus 53 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 132 (514)
....++|++|.....+.++..| +..-+....|..+.++|+.++|..+++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~P-------------------------------n~~~a~vLkaLsl~r~gk~~ea~~~Le 67 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHP-------------------------------NALYAKVLKALSLFRLGKGDEALKLLE 67 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCC-------------------------------CcHHHHHHHHHHHHHhcCchhHHHHHh
Confidence 3567899999999999999977 445566777888899999999999998
Q ss_pred cCCCC-CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCC
Q 010276 133 GIPSK-ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLD 211 (514)
Q Consensus 133 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (514)
..... +.+...+-.+-.+|..+|+.++|..+|+++...+|. .+....+...+.+.+.+......+.+..+..|...
T Consensus 68 ~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~-- 144 (932)
T KOG2053|consen 68 ALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA-- 144 (932)
T ss_pred hhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc--
Confidence 86444 567778888889999999999999999999999998 77777777777777766555555555544444221
Q ss_pred chhHHhHHHHHHHHHHhcC---------HHHHHHHHHHHHHhC-CCc-HHHHHHHHHHHHHhCChHHHHHHHH-HHHh-h
Q 010276 212 SSRWLHRYVEAQCCIASND---------YKGGLELFAELLQRF-PNN-IHILLEMAKVDAIIGKNDEAILNFE-KVRS-I 278 (514)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~---------~~~A~~~~~~~~~~~-p~~-~~~~~~la~~~~~~~~~~~A~~~~~-~~~~-~ 278 (514)
---|... ..+...... ..-|...+++.++.. +-. ..-....-.++..+|++++|.+.+. ...+ .
T Consensus 145 yyfWsV~---Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l 221 (932)
T KOG2053|consen 145 YYFWSVI---SLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKL 221 (932)
T ss_pred chHHHHH---HHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhc
Confidence 0111111 111111111 122444455555443 211 1111222345566777888877773 2222 3
Q ss_pred CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC
Q 010276 279 DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR 316 (514)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 316 (514)
.+.+...-..-...+...++|.+-.++..+++...+++
T Consensus 222 ~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 222 TSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 33344444455666777777777777777777777776
No 134
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.29 E-value=1.1e-10 Score=106.18 Aligned_cols=111 Identities=15% Similarity=0.200 Sum_probs=105.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 010276 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (514)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (514)
...|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.++...|+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 45588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhcCCCChHHHHHHHHHHhh
Q 010276 299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWER 329 (514)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (514)
+++|+..|++++.++|+++.+...++.+...
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998888776544
No 135
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.25 E-value=1.3e-07 Score=81.71 Aligned_cols=257 Identities=17% Similarity=0.133 Sum_probs=192.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 010276 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNN-IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (514)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (514)
+.+.++...-.|+++.|.+-|+.++. +|.. .--+..+-.-..+.|..+.|+.+-+++....|.-+.++...-...+..
T Consensus 123 hlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~ 201 (531)
T COG3898 123 HLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAA 201 (531)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhc
Confidence 34557888888999999999998864 3432 111222222334679999999999999999999999888888888999
Q ss_pred CChhHHHHHHHHHhhcC---CCCh-----HHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHH
Q 010276 297 CDYSKLSKLVHDLLSID---PSRP-----EVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEA 368 (514)
Q Consensus 297 ~~~~~A~~~~~~~~~~~---~~~~-----~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (514)
|+|+.|+++.+...... ++-. ..+...+......+...|...-..+.++.|+....-..-+..+++.|+..+
T Consensus 202 gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rK 281 (531)
T COG3898 202 GDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRK 281 (531)
T ss_pred CChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhh
Confidence 99999999987765432 2211 112222223333677789999999999999999988899999999999999
Q ss_pred HHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHH---HHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010276 369 AVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAR---EAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESAL 445 (514)
Q Consensus 369 A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~ 445 (514)
+-.+++.+.+..|....+.. ..+.+.|+ .++.-++ +...+.|++.+....++..-..- |++..|..--+.+.
T Consensus 282 g~~ilE~aWK~ePHP~ia~l--Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda-~e~~~ARa~Aeaa~ 356 (531)
T COG3898 282 GSKILETAWKAEPHPDIALL--YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDA-GEFSAARAKAEAAA 356 (531)
T ss_pred hhhHHHHHHhcCCChHHHHH--HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhc-cchHHHHHHHHHHh
Confidence 99999999999888744322 22334444 3443343 44557799999999999988887 99999999999998
Q ss_pred hhCCCChHHHHHHHHHHHHc-CChhHHHHHHHHHHhh
Q 010276 446 RLEPGYLGAALALAELHVIE-GRNGDAVSLLERYLKD 481 (514)
Q Consensus 446 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~ 481 (514)
...|. ..++..|+.+.... |+-.+...++-++++-
T Consensus 357 r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 357 REAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 88887 46777788887766 9999999999998874
No 136
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=6e-10 Score=93.65 Aligned_cols=122 Identities=20% Similarity=0.245 Sum_probs=99.1
Q ss_pred ChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC--ChHHHHHHH
Q 010276 365 RPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS--GREKAKKFY 441 (514)
Q Consensus 365 ~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--~~~~A~~~~ 441 (514)
..+.-+.-++.-+..+|++ +.|..||.+|..+|+++.|...|.+++++.|++++.+..+|.++....| ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 3455566667777778887 7788888888888888888888888888888888888888888776533 347888889
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276 442 ESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS 486 (514)
Q Consensus 442 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 486 (514)
+++++.+|++..+.+.||..++..|+|.+|...++..++..|.+.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999999988887663
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.24 E-value=5.3e-10 Score=87.94 Aligned_cols=117 Identities=25% Similarity=0.225 Sum_probs=97.1
Q ss_pred hcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCh
Q 010276 395 QFSKVKEALYAAREAMKAMPQS---AKALKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAALALAELHVIEGRN 468 (514)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~ 468 (514)
..++...+...++..+..+|+. ..+.+.+|.++... |++++|...|++++...|+. +.+.+.++.++...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~-g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQ-GDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 5788888888899999999888 56677899999998 99999999999999887655 34788899999999999
Q ss_pred hHHHHHHHHHHhhCCCchHHHHHHHHHHHhccHHHHHHHHHHHh
Q 010276 469 GDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAAL 512 (514)
Q Consensus 469 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 512 (514)
++|+..++........+.++..+|.++...|++++|+..|++||
T Consensus 102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999997632222223588888999999999999999999885
No 138
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.24 E-value=2.9e-07 Score=79.67 Aligned_cols=284 Identities=16% Similarity=0.088 Sum_probs=216.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhCC
Q 010276 222 AQCCIASNDYKGGLELFAELLQRFPNN--IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI-MTYMDEYAMLLKVKCD 298 (514)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 298 (514)
|.+....|+-..|...-.+.-+.-..+ +-++..-++.-...|+++.|.+-|+.++. +|.. .-.+..+-.--...|.
T Consensus 91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhccc
Confidence 666777899999999988887654444 44555668888889999999999998876 3432 2223333334467899
Q ss_pred hhHHHHHHHHHhhcCCCChHHHHHHH-HHHhhcChhHHHHHHHHHHHhc---ccCch-----hHHHHHHHHHhcCChHHH
Q 010276 299 YSKLSKLVHDLLSIDPSRPEVFVALS-VLWERKDERGALSYAEKSIRID---ERHIP-----GYIMKGNLLLSMKRPEAA 369 (514)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~A~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~A 369 (514)
.+.|+.+.+++....|.-+.++...- ..+..|+++.|++..+...... ++..+ .+...+.. .-..+...|
T Consensus 170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s-~ldadp~~A 248 (531)
T COG3898 170 REAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS-LLDADPASA 248 (531)
T ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH-HhcCChHHH
Confidence 99999999999999999988776554 4444499999999998765532 22111 11122222 223468889
Q ss_pred HHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHH---HHH
Q 010276 370 VIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYE---SAL 445 (514)
Q Consensus 370 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~---~a~ 445 (514)
...-.++.++.|+. ++-..-+..+++.|+..++-.+++.+.+..|. +.++ ..|... ..-+.++.-++ +..
T Consensus 249 r~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia----~lY~~a-r~gdta~dRlkRa~~L~ 322 (531)
T COG3898 249 RDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIA----LLYVRA-RSGDTALDRLKRAKKLE 322 (531)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHH----HHHHHh-cCCCcHHHHHHHHHHHH
Confidence 99999999999998 78888899999999999999999999999887 4433 333332 22233444444 445
Q ss_pred hhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHh-ccHHHHHHHHHHHhc
Q 010276 446 RLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAAT-NMLQEALSHYEAALR 513 (514)
Q Consensus 446 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~ 513 (514)
.+.|++.+.....+..-..-|++..|..--+.+....|...++..++++-... |+-.++..++-+++.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999999999999876 999999999988764
No 139
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=4.6e-08 Score=92.30 Aligned_cols=326 Identities=17% Similarity=0.089 Sum_probs=175.3
Q ss_pred HHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHh-----------cCCCCHHHHHHHHHhcc
Q 010276 118 HFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLR-----------HCPFFIEAITALAELGA 186 (514)
Q Consensus 118 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~-----------~~p~~~~~~~~l~~~~~ 186 (514)
|...|+.+.|.+.++.| .+..+|-.++....+..+.+-|.-++-.+-. .+|+..++.
T Consensus 738 yvtiG~MD~AfksI~~I----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eak-------- 805 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAK-------- 805 (1416)
T ss_pred EEEeccHHHHHHHHHHH----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhH--------
Confidence 34578888887777766 3455677788877777777766655432211 112111111
Q ss_pred CcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChH
Q 010276 187 TPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKND 266 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~ 266 (514)
-|......|..++|..+|++.-. +-.+-..|...|.++
T Consensus 806 ----------------------------------vAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~ 843 (1416)
T KOG3617|consen 806 ----------------------------------VAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWS 843 (1416)
T ss_pred ----------------------------------HHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHH
Confidence 14445566777777777766532 223445566667777
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHH----------hhcCCC----------ChHHHHHHHHH
Q 010276 267 EAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL----------LSIDPS----------RPEVFVALSVL 326 (514)
Q Consensus 267 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----------~~~~~~----------~~~~~~~l~~~ 326 (514)
+|.+.-+.--.+. -...+++++..+...++.+.|+++|+++ +..+|. ++..|...|..
T Consensus 844 eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqY 921 (1416)
T KOG3617|consen 844 EAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQY 921 (1416)
T ss_pred HHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHH
Confidence 6666554321111 1235666666666677777777666554 222222 34455555665
Q ss_pred Hhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHH
Q 010276 327 WER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYA 405 (514)
Q Consensus 327 ~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 405 (514)
+.. |+.+.|+.+|..+-. |+.+..+.+-+|+.++|..+-++. .+..+-+.+|..|...|+..+|+..
T Consensus 922 lES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qGk~~kAa~iA~es----gd~AAcYhlaR~YEn~g~v~~Av~F 989 (1416)
T KOG3617|consen 922 LESVGEMDAALSFYSSAKD--------YFSMVRIKCIQGKTDKAARIAEES----GDKAACYHLARMYENDGDVVKAVKF 989 (1416)
T ss_pred HhcccchHHHHHHHHHhhh--------hhhheeeEeeccCchHHHHHHHhc----ccHHHHHHHHHHhhhhHHHHHHHHH
Confidence 555 777777777776532 333334444444444444333221 1123445555555555555555555
Q ss_pred HHHHHhh------CCCC--------------HHHHHHHHHHHHhcCCChHHHHHHHHHH------H--------------
Q 010276 406 AREAMKA------MPQS--------------AKALKLVGDVHASNASGREKAKKFYESA------L-------------- 445 (514)
Q Consensus 406 ~~~~~~~------~p~~--------------~~~~~~l~~~~~~~~~~~~~A~~~~~~a------~-------------- 445 (514)
|.++-.. ..++ +.-....+..|...+|....|...|.+| +
T Consensus 990 fTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen 990 FTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence 5544221 1100 0111122333333322444444433322 1
Q ss_pred ---hhCC-CChHHHHHHHHHHHHcCChhHHHHHHHHHH------hhC----------------CC------c----hHHH
Q 010276 446 ---RLEP-GYLGAALALAELHVIEGRNGDAVSLLERYL------KDW----------------AD------D----SLHV 489 (514)
Q Consensus 446 ---~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~------~~~----------------~~------~----~~~~ 489 (514)
.++| .+|..+..-+..+....+|++|...+-.+. .+. |. . .++-
T Consensus 1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLe 1149 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLE 1149 (1416)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHH
Confidence 1233 346667777778888888888877655442 221 11 0 4788
Q ss_pred HHHHHHHHhccHHHHHHHHHHH
Q 010276 490 KLAQVFAATNMLQEALSHYEAA 511 (514)
Q Consensus 490 ~l~~~~~~~g~~~~A~~~~~~a 511 (514)
.+|.++.++|.|..|-+-|.+|
T Consensus 1150 qvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1150 QVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHhccchHHHHHHHhhh
Confidence 8999999999999998888765
No 140
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=7.5e-10 Score=93.07 Aligned_cols=121 Identities=13% Similarity=0.064 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh----cChhHHHHHHHH
Q 010276 266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER----KDERGALSYAEK 341 (514)
Q Consensus 266 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~A~~~~~~ 341 (514)
+.-+.-++.-+..+|++.+.|..+|.+|...|++..|...|.++.++.|++++.+..++.++.. ....++...+++
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 3334445555556666666666666666666666666666666666666666666666664444 233477777888
Q ss_pred HHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHH
Q 010276 342 SIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSY 386 (514)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 386 (514)
++..+|.++.+.+.+|..++..|+|.+|+..++..+...|.+..+
T Consensus 219 al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 219 ALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 888888888888888888888888888888888888777766443
No 141
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.20 E-value=2.2e-08 Score=99.68 Aligned_cols=238 Identities=12% Similarity=0.090 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhc-CCCCh----HHHHHHHHHHhh-cChhHHHHHH
Q 010276 266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI-DPSRP----EVFVALSVLWER-KDERGALSYA 339 (514)
Q Consensus 266 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~----~~~~~l~~~~~~-~~~~~A~~~~ 339 (514)
.+..+.|++.+.-+|+..-.|..+.......++.++|.+..++++.. ++... .+|..+-++... |.-+.-.+.|
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 34456677777888888888888888888888888888888888863 33332 233333333333 6666777888
Q ss_pred HHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--C
Q 010276 340 EKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ--S 416 (514)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~ 416 (514)
+++.+.... ...+..+..+|...+++++|.++|+.+++...+. ..|..++..++++++-+.|...+.++++.-|. +
T Consensus 1521 eRAcqycd~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1521 ERACQYCDA-YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHHHhcch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 888765432 4567788889999999999999999998887754 78999999999999999999999999998887 6
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc---hHHHHHHH
Q 010276 417 AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLHVKLAQ 493 (514)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~ 493 (514)
.......+.+-++. |+.+.+...|+-.+.-+|...+.|.-+...-.+.|+.+.+..+|++++.+.-.. ..++..=.
T Consensus 1600 v~~IskfAqLEFk~-GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKY-GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HHHHHHHHHHHhhc-CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 77788888888888 999999999999999999999999999999999999999999999998876433 34444433
Q ss_pred HHHH-hccHHHHH
Q 010276 494 VFAA-TNMLQEAL 505 (514)
Q Consensus 494 ~~~~-~g~~~~A~ 505 (514)
-|.+ .|+-+...
T Consensus 1679 eyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1679 EYEKSHGDEKNVE 1691 (1710)
T ss_pred HHHHhcCchhhHH
Confidence 3443 35544333
No 142
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.20 E-value=2.5e-09 Score=84.38 Aligned_cols=196 Identities=15% Similarity=0.069 Sum_probs=134.3
Q ss_pred hhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 010276 213 SRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAML 292 (514)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 292 (514)
.....++.+|..|-..|-+.-|.--|.+++.+.|+-++++..+|..+...|+++.|.+.|+..++++|.+.-+..+.|..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 34445567788888888888899999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHH-HHHhcccCchhHHHHHHHHHhcCChHHHHH
Q 010276 293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEK-SIRIDERHIPGYIMKGNLLLSMKRPEAAVI 371 (514)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 371 (514)
++-.|++.-|.+-+.+..+.+|++|---..+-..-..-++.+|..-+.+ +...+.+ ...|...+ +..|+..+ ..
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e-~WG~~iV~---~yLgkiS~-e~ 217 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKE-QWGWNIVE---FYLGKISE-ET 217 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHh-hhhHHHHH---HHHhhccH-HH
Confidence 8999999999999988888888887543333222222556666654433 3332222 22222222 22233221 12
Q ss_pred HHHHhHhhcCCh--------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 010276 372 AFRGAQELRPDL--------RSYQGLVHSYLQFSKVKEALYAAREAMKAM 413 (514)
Q Consensus 372 ~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 413 (514)
.++++.....++ ++++.+|..+...|+.++|...|+-++..+
T Consensus 218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 333333322222 356777777777788888777777776543
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.19 E-value=7.5e-10 Score=84.44 Aligned_cols=100 Identities=19% Similarity=0.203 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC---hHHHHHH
Q 010276 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAALAL 458 (514)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l 458 (514)
.++.+|..+...|++++|+..+++++..+|++ +.+++.+|.++... |++++|+..|++++...|++ +.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ-GKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34555555555555555555555555555544 34555566666655 66666666666666555553 3455556
Q ss_pred HHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276 459 AELHVIEGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 459 a~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (514)
|.++...|++++|...++++++..|++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 666666666666666666666665554
No 144
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.19 E-value=3.9e-07 Score=80.06 Aligned_cols=222 Identities=25% Similarity=0.262 Sum_probs=161.3
Q ss_pred hCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhCChhHHHHHHHHHhh--cCCCChHHHHHHHHHHhh-cChhHHH
Q 010276 262 IGKNDEAILNFEKVRSIDPY--IMTYMDEYAMLLKVKCDYSKLSKLVHDLLS--IDPSRPEVFVALSVLWER-KDERGAL 336 (514)
Q Consensus 262 ~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~-~~~~~A~ 336 (514)
.+.+..+...+...+...+. ........+..+...+.+..+...+..... ..+.....+...+..... +++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35556666666666666554 255666667777777777777777777665 566666666666666655 6677777
Q ss_pred HHHHHHHHhcccCchhHHHHHH-HHHhcCChHHHHHHHHHhHhhcCC--h--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010276 337 SYAEKSIRIDERHIPGYIMKGN-LLLSMKRPEAAVIAFRGAQELRPD--L--RSYQGLVHSYLQFSKVKEALYAAREAMK 411 (514)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~--~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (514)
..+..++...+.........+. ++...|+++.|...+.+++...|. . ..+...+..+...++++.|+..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 7777777766665555555555 778888888888888888776662 2 4455566667778888888888888888
Q ss_pred hCCC-CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276 412 AMPQ-SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD 484 (514)
Q Consensus 412 ~~p~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 484 (514)
..+. ....+..++..+... ++++.|...+..++...|.....+..++..+...+.++++...+.+.+...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKL-GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHc-ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8888 688888888888887 88888888888888888876667777777777667788888888888888876
No 145
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.19 E-value=5.8e-09 Score=103.58 Aligned_cols=215 Identities=17% Similarity=0.155 Sum_probs=188.9
Q ss_pred hhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHh-cccC----chhHHHHHHHHHhcCChHHHHHH
Q 010276 299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRI-DERH----IPGYIMKGNLLLSMKRPEAAVIA 372 (514)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~A~~~ 372 (514)
-.+..+-|++.+..+|++.-.|........+ ++.++|.+..++++.. ++.. ..+|..+-++...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 3445667888888899999999887666666 9999999999999973 4432 34566666666667877888899
Q ss_pred HHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC--
Q 010276 373 FRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG-- 450 (514)
Q Consensus 373 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-- 450 (514)
|++|.+.+.....+..|..+|...+++++|.++++.+++...+...+|..+|..+... ++-+.|...+.+|++.-|.
T Consensus 1520 FeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~-ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1520 FERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ-NEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc-cHHHHHHHHHHHHHhhcchhh
Confidence 9999998877789999999999999999999999999999998899999999999998 8889999999999999888
Q ss_pred ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccHHHHHHHHHHHhcC
Q 010276 451 YLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRL 514 (514)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~l 514 (514)
+.+.....|.+.++.|+.+.+..+|+-.+..+|.- +.|..+.+.-.+.|+.+.+...|++++.+
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 67788889999999999999999999999999986 59999999999999999999999999864
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.19 E-value=8.6e-10 Score=84.10 Aligned_cols=106 Identities=25% Similarity=0.222 Sum_probs=87.2
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHH
Q 010276 350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALKL 422 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~ 422 (514)
+..++.+|..+...|++++|+..|++++...|++ .+++.+|.++...|++++|+..+++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4567788888888888888888888888888764 467888888888888888888888888887775 567888
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHH
Q 010276 423 VGDVHASNASGREKAKKFYESALRLEPGYLGAAL 456 (514)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 456 (514)
+|.++... |++++|+..++++++..|+++.+..
T Consensus 82 ~~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQEL-GDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHh-CChHHHHHHHHHHHHHCcCChhHHH
Confidence 88888887 8888899999888888888765443
No 147
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=8e-08 Score=78.74 Aligned_cols=257 Identities=14% Similarity=0.177 Sum_probs=188.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh
Q 010276 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (514)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (514)
.-.+-++-.|+|..++...++.-... ..++....+.+.|..+|++..-+......- .....+...++.....-++.
T Consensus 13 F~iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 13 FNIRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchh
Confidence 33677788899999988877764433 677888889999999998776554433322 22234556666666666666
Q ss_pred hHHHHHHHHHhh-cCCCChHHHHHHH-HHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHh
Q 010276 300 SKLSKLVHDLLS-IDPSRPEVFVALS-VLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (514)
Q Consensus 300 ~~A~~~~~~~~~-~~~~~~~~~~~l~-~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 376 (514)
++-+.-..+.+. ....+..++..++ .++.. +++++|++..... .+.++...-..++.++.+.+-|...++++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555544443 3333333444444 45555 9999999988773 33455556667888999999999999999
Q ss_pred HhhcCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCh
Q 010276 377 QELRPDLRSYQGLVHSYLQ----FSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL 452 (514)
Q Consensus 377 ~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 452 (514)
.+++.+ .....|+.++.. .+++.+|.-+|++.-+..|..+......+.++..+ |++++|...++.++..+++++
T Consensus 164 q~ided-~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~-~~~eeAe~lL~eaL~kd~~dp 241 (299)
T KOG3081|consen 164 QQIDED-ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQL-GRYEEAESLLEEALDKDAKDP 241 (299)
T ss_pred HccchH-HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHh-cCHHHHHHHHHHHHhccCCCH
Confidence 877644 344445555543 45799999999999998888899999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHH-HHHHHHhhCCCchH
Q 010276 453 GAALALAELHVIEGRNGDAVS-LLERYLKDWADDSL 487 (514)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~~~~ 487 (514)
+++.++..+-...|...++.+ .+.+.....|+...
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 999999999999998877665 45555556676653
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.17 E-value=1.7e-10 Score=77.76 Aligned_cols=67 Identities=24% Similarity=0.268 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC-ChhHHHHHHHHHHhhCC
Q 010276 416 SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG-RNGDAVSLLERYLKDWA 483 (514)
Q Consensus 416 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~ 483 (514)
++..|..+|.++... |++++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~-~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQ-GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 455666666666666 66666666666666666666666666666666666 56666666666666665
No 149
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.17 E-value=2e-09 Score=87.54 Aligned_cols=117 Identities=13% Similarity=0.066 Sum_probs=84.6
Q ss_pred cCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276 348 RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV 423 (514)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 423 (514)
.....++.+|..+...|++++|+.+|+++++..|+. .++..+|.++...|++++|+..+++++...|+++..+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 344556777777777888888888888877765542 4577777777777888888888887777777777777777
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276 424 GDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 424 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (514)
|.++... |+...+...+.+++. .+++|++.+++++...|++
T Consensus 113 g~~~~~~-g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKR-GEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHc-CChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 7777776 776665555544432 2677888888888888776
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.16 E-value=7e-10 Score=81.15 Aligned_cols=98 Identities=23% Similarity=0.193 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 010276 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464 (514)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 464 (514)
+++.+|..+...|++++|+..++++++..|.++.++..+|.++... +++++|+..+++++...|.++.++..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL-GKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 3556666667777777777777777777776666677777777776 777777777777777777766677777777777
Q ss_pred cCChhHHHHHHHHHHhhCC
Q 010276 465 EGRNGDAVSLLERYLKDWA 483 (514)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~ 483 (514)
.|++++|...+.++++..|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 7777777777777666655
No 151
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.15 E-value=1.6e-09 Score=87.88 Aligned_cols=100 Identities=23% Similarity=0.166 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 010276 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAEL 461 (514)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 461 (514)
.+..+|.++...|++++|+..|++++...|+. +.++.++|.++... |++++|+..+++++.++|.....+..+|.+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~-g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN-GEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 45555666666666666666666665554432 33566666666665 666666666666666666666555555555
Q ss_pred HH-------HcCChh-------HHHHHHHHHHhhCCCc
Q 010276 462 HV-------IEGRNG-------DAVSLLERYLKDWADD 485 (514)
Q Consensus 462 ~~-------~~g~~~-------~A~~~~~~~~~~~~~~ 485 (514)
+. ..|+++ +|+..+++++...|++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 55 555554 4455555566666653
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.14 E-value=3.8e-08 Score=86.92 Aligned_cols=167 Identities=16% Similarity=0.108 Sum_probs=106.2
Q ss_pred HHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHH
Q 010276 256 AKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGA 335 (514)
Q Consensus 256 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A 335 (514)
|.+|...|++++|.+.|.++... +.+.++...|...+ ...+.++...++++|
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~--------------~~~~~~~~~Aa~~~--------------~~Aa~~~k~~~~~~A 93 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADC--------------YEKLGDKFEAAKAY--------------EEAANCYKKGDPDEA 93 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHH--------------HHHTT-HHHHHHHH--------------HHHHHHHHHTTHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHH--------------HHHcCCHHHHHHHH--------------HHHHHHHHhhCHHHH
Confidence 66777777888887777776442 23333333332222 233334444556666
Q ss_pred HHHHHHHHHhccc------CchhHHHHHHHHHhc-CChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHH
Q 010276 336 LSYAEKSIRIDER------HIPGYIMKGNLLLSM-KRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKE 401 (514)
Q Consensus 336 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~ 401 (514)
+.++++++.+.-. -...+..+|.+|... |++++|+++|+++.+..... ..+..++.++...|+|++
T Consensus 94 i~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 94 IECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 6666666554221 134566788888888 89999999999998763211 346788899999999999
Q ss_pred HHHHHHHHHhhCCCC-------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276 402 ALYAAREAMKAMPQS-------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (514)
Q Consensus 402 A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 451 (514)
|+..|+++....-++ ...++..+.|+... ||...|...+++....+|..
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~-~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAM-GDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC
Confidence 999999888753221 13445667777777 89999999999888888754
No 153
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.3e-09 Score=95.02 Aligned_cols=130 Identities=21% Similarity=0.241 Sum_probs=112.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhhcCC----------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 010276 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPD----------------LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS 416 (514)
Q Consensus 353 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 416 (514)
....|+.+++.|+|..|...|++++..-+. ..++.+++.++.++++|.+|+..+.+++...|+|
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 345688889999999999999988765221 1258999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHH-HHHHHHHHhhCC
Q 010276 417 AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDA-VSLLERYLKDWA 483 (514)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~~~~~~~ 483 (514)
..+++..|.++... |+++.|+..|+++++++|+|..+...+..+-.+..++.+. .+.|.+++...+
T Consensus 291 ~KALyRrG~A~l~~-~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 291 VKALYRRGQALLAL-GEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred hhHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999 9999999999999999999999999999998887776555 788888887654
No 154
>PRK15331 chaperone protein SicA; Provisional
Probab=99.11 E-value=2.8e-09 Score=81.58 Aligned_cols=110 Identities=13% Similarity=0.018 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 010276 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHV 463 (514)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 463 (514)
...+..|.-++..|++++|...|+-..-.+|.+++.+..+|.++..+ +++++|+..|..+..+++++|...+..|.|+.
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~-k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l 116 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLK-KQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence 45677778888888888888888888888888888888888888887 88888888888888888888888888888888
Q ss_pred HcCChhHHHHHHHHHHhhCCCchHHHHHHHHH
Q 010276 464 IEGRNGDAVSLLERYLKDWADDSLHVKLAQVF 495 (514)
Q Consensus 464 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 495 (514)
.+|+.+.|...|+.++. .|.+......+..+
T Consensus 117 ~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~ 147 (165)
T PRK15331 117 LMRKAAKARQCFELVNE-RTEDESLRAKALVY 147 (165)
T ss_pred HhCCHHHHHHHHHHHHh-CcchHHHHHHHHHH
Confidence 88888888888888877 35544444444444
No 155
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=99.11 E-value=2.7e-08 Score=76.61 Aligned_cols=148 Identities=20% Similarity=0.182 Sum_probs=88.5
Q ss_pred cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh-cCCh-HHHHHHHHHHHhcCCHHHHHHHHH
Q 010276 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDL-RSYQGLVHSYLQFSKVKEALYAAR 407 (514)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~A~~~~~ 407 (514)
-+.+....-..+.+.+.|. ....+.+|+.+.+.|++.+|...|++++.- ..++ ..+..++...+..+++..|...++
T Consensus 70 ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe 148 (251)
T COG4700 70 LDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE 148 (251)
T ss_pred cChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3444444444444444454 334556666666666766666666666543 2222 445666666666666666666666
Q ss_pred HHHhhCCC--CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 010276 408 EAMKAMPQ--SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480 (514)
Q Consensus 408 ~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (514)
+..+.+|. .++....+|.++... |.+.+|...|+.++...|+ +.+....+..+.++|+.++|..-+....+
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~laa~-g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTLAAQ-GKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHhhcCCccCCCCchHHHHHHHHhc-CCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 66666654 355566666666666 6666666666666666665 45556666666666666666655554444
No 156
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=3.5e-07 Score=75.09 Aligned_cols=117 Identities=12% Similarity=0.035 Sum_probs=53.5
Q ss_pred HHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHH
Q 010276 49 LGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAI 128 (514)
Q Consensus 49 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 128 (514)
-.+-+|-.|+|..++..-.+.-... ..+.....+.+.|+..|....-..........+..+...++.....-++.++-+
T Consensus 14 ~iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 14 NIRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHH
Confidence 3455666799988887776654432 344444445555555555444444433333333333333444443334433333
Q ss_pred HHHhc-CCCC--CccHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010276 129 VEMEG-IPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKE 166 (514)
Q Consensus 129 ~~~~~-~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 166 (514)
..+.. +... ..+.-....-|.++...|++++|.+....
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~ 133 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL 133 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc
Confidence 33332 1111 12222333334445555555555544443
No 157
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.10 E-value=1e-07 Score=78.56 Aligned_cols=192 Identities=19% Similarity=0.216 Sum_probs=138.5
Q ss_pred hhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHH
Q 010276 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF 119 (514)
Q Consensus 40 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 119 (514)
...+..|+..|...++.|+|++|+..|+.+....|..+ -...+.+.++..++
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~----------------------------~~~qa~l~l~yA~Y 82 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSP----------------------------YSEQAQLDLAYAYY 82 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----------------------------ccHHHHHHHHHHHH
Confidence 34678999999999999999999999999999988765 44778899999999
Q ss_pred hcCCHHHHHHHHhcC----CCCCccHHHHHHHHHHHHhcC--------ChhhHHHHHHHHHhcCCCCHHHHHHHHHhccC
Q 010276 120 ALGETKAAIVEMEGI----PSKARNLQMSLLMAKLYRNSR--------HNRGAVACYKECLRHCPFFIEAITALAELGAT 187 (514)
Q Consensus 120 ~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 187 (514)
+.+++++|+..+++. +..|+-.-++++.|.++...= -..+|+..|+..+...|++.-+......+-.-
T Consensus 83 k~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~ 162 (254)
T COG4105 83 KNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKL 162 (254)
T ss_pred hcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 999999999888873 455666777888898877632 24578889999999999876555333222100
Q ss_pred cccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCC
Q 010276 188 PKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGK 264 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~ 264 (514)
. ......-+..|..|.+.|.+-.|+..++.+++..|+. .+++..+..+|..+|-
T Consensus 163 ~-----------------------d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl 219 (254)
T COG4105 163 N-----------------------DALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGL 219 (254)
T ss_pred H-----------------------HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC
Confidence 0 0000111344777888888888888888888776654 4566677777777777
Q ss_pred hHHHHHHHHHHHhhCCCC
Q 010276 265 NDEAILNFEKVRSIDPYI 282 (514)
Q Consensus 265 ~~~A~~~~~~~~~~~~~~ 282 (514)
.++|.+.-.-+-...|++
T Consensus 220 ~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 220 TDEAKKTAKVLGANYPDS 237 (254)
T ss_pred hHHHHHHHHHHHhcCCCC
Confidence 777766554444444444
No 158
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.10 E-value=7.2e-07 Score=85.47 Aligned_cols=284 Identities=13% Similarity=0.030 Sum_probs=190.7
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHH
Q 010276 224 CCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLS 303 (514)
Q Consensus 224 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 303 (514)
-....+++.+|.....++++.+|+.+.+....|.++.++|+.++|..+++..-...+++...+..+..+|..+|+.++|.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 34567899999999999999999999999999999999999999999988888888888889999999999999999999
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHH-HHHHHHhcCChH---------HHHHH
Q 010276 304 KLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIM-KGNLLLSMKRPE---------AAVIA 372 (514)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------~A~~~ 372 (514)
.+|+++...+|+ .+....+-.+|.+ ++|.+-.+.--+..+..|+.+..+.. +..+.......+ -|...
T Consensus 98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 98 HLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 999999999999 7777776667766 66665544444555567777665444 333333333332 34455
Q ss_pred HHHhHhhc-CCh--HHHHHHHHHHHhcCCHHHHHHHHHH-HHhhCC-CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 010276 373 FRGAQELR-PDL--RSYQGLVHSYLQFSKVKEALYAARE-AMKAMP-QSAKALKLVGDVHASNASGREKAKKFYESALRL 447 (514)
Q Consensus 373 ~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~p-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~ 447 (514)
.++.++.. +-. .-....-.++..+|++++|.+.+.. ..+..+ .+...-......+... +++.+-.+...+++..
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l-~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLL-NRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh-cChHHHHHHHHHHHHh
Confidence 55555554 221 1123334566778999999999843 333333 3444444555566666 8999999999999988
Q ss_pred CCCChHHHHH-HHHHH------------HHcCChhHHHHHHHHHHhhCCCch--HHHHHHHHHHHhccHHHHHHHHH
Q 010276 448 EPGYLGAALA-LAELH------------VIEGRNGDAVSLLERYLKDWADDS--LHVKLAQVFAATNMLQEALSHYE 509 (514)
Q Consensus 448 ~~~~~~~~~~-la~~~------------~~~g~~~~A~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~ 509 (514)
++++-.++.. .-.+. ...+..+.-++..++.+......+ ++..+-.-+...|+.+++...|-
T Consensus 256 ~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~ 332 (932)
T KOG2053|consen 256 GNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYF 332 (932)
T ss_pred CCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHH
Confidence 8887211111 11111 122333444444444443322222 44444444456788888776664
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.10 E-value=3.2e-09 Score=86.35 Aligned_cols=116 Identities=19% Similarity=0.198 Sum_probs=98.3
Q ss_pred CChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC---chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHH
Q 010276 315 SRPEVFVALSVLWER-KDERGALSYAEKSIRIDERH---IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGL 389 (514)
Q Consensus 315 ~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l 389 (514)
.....++.+|..+.. |++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|++ ..+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 446678888988877 99999999999999887764 3589999999999999999999999999999988 788999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276 390 VHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (514)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 451 (514)
|.++...|+...+...+..++ ..+++|..++++++..+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~---------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE---------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH---------------------HHHHHHHHHHHHHHhhCchh
Confidence 999999999877776655543 34677888888888888876
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.10 E-value=6e-09 Score=98.69 Aligned_cols=122 Identities=9% Similarity=0.026 Sum_probs=83.3
Q ss_pred hHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhc--------CCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcCCCh
Q 010276 366 PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF--------SKVKEALYAAREAMKA--MPQSAKALKLVGDVHASNASGR 434 (514)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~ 434 (514)
...|+.+|+++++.+|++ .++-.++.++... ++...+....++++.. +|.++.++..+|...... |++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~-g~~ 436 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK-GKT 436 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc-CCH
Confidence 455666666666666665 4444444444322 1234455555555553 666677777788877776 888
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHH
Q 010276 435 EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHV 489 (514)
Q Consensus 435 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 489 (514)
++|...+++++.++|+ ..++..+|.++...|++++|++.|++++.++|.++.|+
T Consensus 437 ~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 437 DEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 8888888888888884 67888888888888888888888888888888765433
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.09 E-value=3.8e-10 Score=79.26 Aligned_cols=78 Identities=28% Similarity=0.392 Sum_probs=41.1
Q ss_pred CChHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccHHHHHHHH
Q 010276 432 SGREKAKKFYESALRLEPG--YLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHY 508 (514)
Q Consensus 432 ~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 508 (514)
|+++.|+..++++++.+|. +...++.+|.++++.|++++|+.++++ .+..|.+ ...+.+|.++.++|++++|+++|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5555555555555555553 233445555555555555555555555 4444444 34445555555555555555555
Q ss_pred HH
Q 010276 509 EA 510 (514)
Q Consensus 509 ~~ 510 (514)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.09 E-value=5.2e-09 Score=84.83 Aligned_cols=121 Identities=16% Similarity=0.090 Sum_probs=88.9
Q ss_pred ChhHHHHHHHHHHHhcccC--chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHH
Q 010276 331 DERGALSYAEKSIRIDERH--IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALY 404 (514)
Q Consensus 331 ~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~ 404 (514)
.+..+...+...++..+.. ...++.+|.++...|++++|+..|++++.+.|+. .++.++|.++...|++++|+.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444445554444444333 4567888888888888888888888888776653 368888899999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHH-------hcCCChH-------HHHHHHHHHHhhCCCCh
Q 010276 405 AAREAMKAMPQSAKALKLVGDVHA-------SNASGRE-------KAKKFYESALRLEPGYL 452 (514)
Q Consensus 405 ~~~~~~~~~p~~~~~~~~l~~~~~-------~~~~~~~-------~A~~~~~~a~~~~~~~~ 452 (514)
.+++++...|.....+..+|.++. .. |+++ +|...|++++..+|.+.
T Consensus 94 ~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~-g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 94 YYFQALERNPFLPQALNNMAVICHYRGEQAIEQ-GDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHc-ccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999998888888888888888887 65 6766 55566666777777543
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.08 E-value=6.4e-10 Score=73.78 Aligned_cols=63 Identities=22% Similarity=0.349 Sum_probs=46.3
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q 010276 221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM 283 (514)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 283 (514)
+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 467777777777777777777777777777777777777777777777777777777777653
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.08 E-value=5.3e-10 Score=78.51 Aligned_cols=81 Identities=23% Similarity=0.262 Sum_probs=71.1
Q ss_pred hcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHH
Q 010276 228 SNDYKGGLELFAELLQRFPN--NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKL 305 (514)
Q Consensus 228 ~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 305 (514)
.|++++|+..++++++..|. +...++.+|.++++.|++++|+..+++ .+.+|.++.....+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 58999999999999999885 566788899999999999999999999 888888888888999999999999999999
Q ss_pred HHHH
Q 010276 306 VHDL 309 (514)
Q Consensus 306 ~~~~ 309 (514)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8864
No 165
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.08 E-value=5.2e-07 Score=79.20 Aligned_cols=222 Identities=27% Similarity=0.314 Sum_probs=192.0
Q ss_pred hcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhCChhHHH
Q 010276 228 SNDYKGGLELFAELLQRFPN--NIHILLEMAKVDAIIGKNDEAILNFEKVRS--IDPYIMTYMDEYAMLLKVKCDYSKLS 303 (514)
Q Consensus 228 ~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~ 303 (514)
.+.+..+...+.......+. ........+..+...+++..+...+..... ..+.....+...+......+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 46777888888888887776 378888899999999999999999999987 67888889999999999999999999
Q ss_pred HHHHHHhhcCCCChHHHHHHHH-HHhh-cChhHHHHHHHHHHHhcc---cCchhHHHHHHHHHhcCChHHHHHHHHHhHh
Q 010276 304 KLVHDLLSIDPSRPEVFVALSV-LWER-KDERGALSYAEKSIRIDE---RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQE 378 (514)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~-~~~~-~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 378 (514)
..+..+....+.........+. ++.. ++++.|...+.+++...| .........+..+...++++.|+..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 9999999988877555555554 4444 999999999999988776 3455566677778889999999999999999
Q ss_pred hcCC-h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 010276 379 LRPD-L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450 (514)
Q Consensus 379 ~~~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~ 450 (514)
..+. . ..+..++..+...+++++|...+..++...|.....+...+..+... +..+++...+.+++...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL-GRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHc-CCHHHHHHHHHHHHHhCcc
Confidence 9988 4 78999999999999999999999999999999888888888888854 8899999999999999987
No 166
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.07 E-value=7.1e-10 Score=74.67 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC-ChhHHHHHHHHHhhcCC
Q 010276 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC-DYSKLSKLVHDLLSIDP 314 (514)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~ 314 (514)
+..+..+|.+++..|++++|+..|+++++.+|+++.++..+|.++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4455555555555555555555555555555555555555555555555 45555555555555444
No 167
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.07 E-value=1.7e-07 Score=80.19 Aligned_cols=300 Identities=14% Similarity=0.084 Sum_probs=189.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHH
Q 010276 143 MSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEA 222 (514)
Q Consensus 143 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 222 (514)
-...-|.-++...++++|+..+.+.+..-.+...-+..++ ...
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG-------------------------------------~l~ 50 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLG-------------------------------------CLV 50 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------------------------cch
Confidence 3455566667777788888877777765443322222221 113
Q ss_pred HHHHHhcCHHHHHHHHHHHHHh----CCC--cHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC-----HHHHHHHHH
Q 010276 223 QCCIASNDYKGGLELFAELLQR----FPN--NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI-----MTYMDEYAM 291 (514)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~~~~~----~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~ 291 (514)
.+....|.|++++..--..++. ... .-+++..+++.+....++.+++.+-+..+...... ......++.
T Consensus 51 ~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~ 130 (518)
T KOG1941|consen 51 TAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGN 130 (518)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHH
Confidence 4444556666555443333321 111 13567777777777778888887777776653322 245666788
Q ss_pred HHHHhCChhHHHHHHHHHhhcCCCC------hHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC----------chhHH
Q 010276 292 LLKVKCDYSKLSKLVHDLLSIDPSR------PEVFVALSVLWER-KDERGALSYAEKSIRIDERH----------IPGYI 354 (514)
Q Consensus 292 ~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~----------~~~~~ 354 (514)
.+...+.++++++.|+.++....++ -.++..+|.++.. .++++|.-+..++.++.... ..+.+
T Consensus 131 Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly 210 (518)
T KOG1941|consen 131 AHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY 210 (518)
T ss_pred HhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH
Confidence 8888888888888888887754332 2456677777777 88888888888777653221 23456
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhhcC--Ch-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHH
Q 010276 355 MKGNLLLSMKRPEAAVIAFRGAQELRP--DL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ------SAKALK 421 (514)
Q Consensus 355 ~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~ 421 (514)
.++..+..+|+.-.|.++.+++.++.- .+ .....+|.+|...|+.+.|..-|+++...... ...++.
T Consensus 211 hmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~ 290 (518)
T KOG1941|consen 211 HMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALD 290 (518)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 788888888999999888888876632 12 34567889999999999998888888764321 134445
Q ss_pred HHHHHHHhcCCCh-----HHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 010276 422 LVGDVHASNASGR-----EKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLK 480 (514)
Q Consensus 422 ~l~~~~~~~~~~~-----~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (514)
..+.+.... .-. =.|++.-++++++...- ......++.+|..+|.-++=...+.++-+
T Consensus 291 g~Akc~~~~-r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 291 GAAKCLETL-RLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred HHHHHHHHH-HHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 555555443 222 34777777776654321 23566788888888877776666665433
No 168
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.07 E-value=3.7e-09 Score=77.24 Aligned_cols=96 Identities=21% Similarity=0.287 Sum_probs=80.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 010276 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (514)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (514)
+..|..+...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+...+..++.++...|+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 45577888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhHHHHHHHHHhhcCC
Q 010276 299 YSKLSKLVHDLLSIDP 314 (514)
Q Consensus 299 ~~~A~~~~~~~~~~~~ 314 (514)
+++|...+.+++...|
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 8888888888877665
No 169
>PRK15331 chaperone protein SicA; Provisional
Probab=99.06 E-value=6.3e-09 Score=79.67 Aligned_cols=96 Identities=15% Similarity=0.101 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHH
Q 010276 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLL 361 (514)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (514)
.+..+..|.-++..|++++|..+|+-+.-.+|.+++.|..+|.++.. +++++|+..|..+..+++++|...+..|.++.
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l 116 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence 44445555555555555555555555555555555555555555544 55555555555555555666666666666666
Q ss_pred hcCChHHHHHHHHHhHh
Q 010276 362 SMKRPEAAVIAFRGAQE 378 (514)
Q Consensus 362 ~~~~~~~A~~~~~~~~~ 378 (514)
..|+.+.|..+|+.++.
T Consensus 117 ~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 LMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 66666666666666655
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.06 E-value=9.3e-10 Score=72.98 Aligned_cols=62 Identities=29% Similarity=0.432 Sum_probs=27.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276 389 LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (514)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 451 (514)
+|..+...|++++|+..|+++++.+|+++.+++.+|.++... |++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ-GRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCC
Confidence 344444444444444444444444444444444444444444 44444444444444444443
No 171
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.05 E-value=1.2e-05 Score=72.99 Aligned_cols=364 Identities=13% Similarity=0.069 Sum_probs=165.7
Q ss_pred CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccH---hHHHhccCCcCCCCCCCcC
Q 010276 134 IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDI---ISLFAQTPNRSGRAPFDHL 210 (514)
Q Consensus 134 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 210 (514)
+...|.+.++|+.+.+-+..+ .+++....|++.+...|..+.+|..........+++ +..+.++... ..
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-------vL 84 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK-------VL 84 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------Hh
Confidence 344566666666666655554 666666666666666666666665554433333222 2222222111 01
Q ss_pred CchhHHhHHHHHHHHHHhcCHHHHHHH----HHHHHH---hCCCcHHHHHHHHHHHH---------HhCChHHHHHHHHH
Q 010276 211 DSSRWLHRYVEAQCCIASNDYKGGLEL----FAELLQ---RFPNNIHILLEMAKVDA---------IIGKNDEAILNFEK 274 (514)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~----~~~~~~---~~p~~~~~~~~la~~~~---------~~~~~~~A~~~~~~ 274 (514)
+-+.|..+. ..+-...|+...+... |+-++. .++.+..+|...+..+. ...+.+.-...|++
T Consensus 85 nlDLW~lYl--~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqr 162 (656)
T KOG1914|consen 85 NLDLWKLYL--SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQR 162 (656)
T ss_pred hHhHHHHHH--HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHH
Confidence 122232221 2222234444444333 333333 24455555655554432 23345556677888
Q ss_pred HHhhCCCCHH-HHHHHH-------------HHHHHhCChhHHHHHHHHHhhc-------CCC-----C------hHHHHH
Q 010276 275 VRSIDPYIMT-YMDEYA-------------MLLKVKCDYSKLSKLVHDLLSI-------DPS-----R------PEVFVA 322 (514)
Q Consensus 275 ~~~~~~~~~~-~~~~l~-------------~~~~~~~~~~~A~~~~~~~~~~-------~~~-----~------~~~~~~ 322 (514)
++...-.+.+ .|..+- .+-.....|..|...+++.... .|. . .+.|.+
T Consensus 163 al~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n 242 (656)
T KOG1914|consen 163 ALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKN 242 (656)
T ss_pred HhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHH
Confidence 8765333321 221111 1112233455566555554332 111 0 122322
Q ss_pred HHHHHhh-------cCh--hHHHHHHHHHHHhcccCchhHHHHHHHHHhcCC--------------hHHHHHHHHHhHhh
Q 010276 323 LSVLWER-------KDE--RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR--------------PEAAVIAFRGAQEL 379 (514)
Q Consensus 323 l~~~~~~-------~~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~ 379 (514)
+...-.. |.. ..-.-.+++++..-+..+++|+..+..+...++ .+++..+|++++..
T Consensus 243 ~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~ 322 (656)
T KOG1914|consen 243 WIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG 322 (656)
T ss_pred HHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 2222211 111 123334566666666666666655555544444 56677777776654
Q ss_pred cCCh--HHHHH--------------------------------------HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q 010276 380 RPDL--RSYQG--------------------------------------LVHSYLQFSKVKEALYAAREAMKAMPQSAKA 419 (514)
Q Consensus 380 ~~~~--~~~~~--------------------------------------l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 419 (514)
.-.. ..++. +...-.+..-...|..+|.++-+..-....+
T Consensus 323 l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhV 402 (656)
T KOG1914|consen 323 LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHV 402 (656)
T ss_pred HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchh
Confidence 2221 11222 2222222233333444444443322111222
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhh--CCCc--hHHHHHHHHH
Q 010276 420 LKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD--WADD--SLHVKLAQVF 495 (514)
Q Consensus 420 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~--~~~~~l~~~~ 495 (514)
+..-|.+-....++..-|.+.|+-.++..++.+..-......+...++-..|..+|++++.. .|+. ++|..+-..-
T Consensus 403 fVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE 482 (656)
T KOG1914|consen 403 FVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE 482 (656)
T ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH
Confidence 22222222211256666666666666666666665555666666666666666666666655 2221 3555555544
Q ss_pred HHhccHHHHHHH
Q 010276 496 AATNMLQEALSH 507 (514)
Q Consensus 496 ~~~g~~~~A~~~ 507 (514)
..-|+....++.
T Consensus 483 S~vGdL~si~~l 494 (656)
T KOG1914|consen 483 SNVGDLNSILKL 494 (656)
T ss_pred HhcccHHHHHHH
Confidence 555555544443
No 172
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.05 E-value=9.6e-11 Score=98.72 Aligned_cols=232 Identities=9% Similarity=0.057 Sum_probs=172.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh
Q 010276 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (514)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (514)
.+|..|+.+|.|++|+.+|.+.+..+|.++..+.+.|.+|++...+..|...+..++.++.....++...+..-..+|..
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 44999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchh---------HHHHHHHHHhcCChHHHH
Q 010276 300 SKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPG---------YIMKGNLLLSMKRPEAAV 370 (514)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~A~ 370 (514)
.+|.+.++.++.+.|++.+..-.++.+-.. .++ +. +.+..|....+ ....|..+...|.++.++
T Consensus 182 ~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl---~E~-~I---~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i 254 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIELKKSLARINSL---RER-KI---ATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPV 254 (536)
T ss_pred HHHHHhHHHHHhhCcccHHHHHHHHHhcch---Hhh-hH---HhhcCCCCCccccchhhhccccCcchhhhhhhccccce
Confidence 999999999999999987766655544321 000 00 11111221111 223466777888888888
Q ss_pred HHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 010276 371 IAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~ 450 (514)
.++.+-+....++..+..-+..+.+.-+++.++....+.+...|.........+..-.-. |...++...++.++.+.|.
T Consensus 255 ~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~-~~~~E~K~~~~T~~~~~P~ 333 (536)
T KOG4648|consen 255 VDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIA-KTSKEVKPTKQTAVKVAPA 333 (536)
T ss_pred eEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHH-hhhhhcCcchhheeeeccc
Confidence 888776655444422211266677777888888888888777766555444444444444 6777788888888888887
Q ss_pred ChHHHHHHH
Q 010276 451 YLGAALALA 459 (514)
Q Consensus 451 ~~~~~~~la 459 (514)
+..+...+.
T Consensus 334 ~~~~~~~~s 342 (536)
T KOG4648|consen 334 VETPKETET 342 (536)
T ss_pred cccchhhhh
Confidence 755444443
No 173
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=7.7e-09 Score=90.27 Aligned_cols=126 Identities=13% Similarity=0.036 Sum_probs=109.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 010276 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQS---------------AKALKLVGDVHASNASGREKAKKFYESALRLEPG 450 (514)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~ 450 (514)
....|..+++.|+|..|...|++++..-+.. ..++.+++.|+.++ +++.+|+....+++.++|+
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl-~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKL-KEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhh-hhHHHHHHHHHHHHhcCCC
Confidence 4556899999999999999999998754311 35789999999999 9999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHH-HHHHHHHh
Q 010276 451 YLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEA-LSHYEAAL 512 (514)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A-~~~~~~al 512 (514)
|..+++..|.++..+|+++.|+..|++++++.|++. +...+..+..+..++.+. .+.|.+++
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999995 888888888777666554 66666654
No 174
>PRK11906 transcriptional regulator; Provisional
Probab=99.03 E-value=4.9e-08 Score=87.68 Aligned_cols=132 Identities=8% Similarity=0.032 Sum_probs=72.0
Q ss_pred HHHHHHHHHhcC---HHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHh---------CChHHHHHHHHHHHhhCCCCH
Q 010276 219 YVEAQCCIASND---YKGGLELFAELL---QRFPNNIHILLEMAKVDAII---------GKNDEAILNFEKVRSIDPYIM 283 (514)
Q Consensus 219 ~~~a~~~~~~~~---~~~A~~~~~~~~---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~~~~~ 283 (514)
+++|...+..+. ...|..+|.+++ ..+|+...++..++.|++.. ....+|....+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 455555544332 345666666666 56666666666666665543 122345555555555555555
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCc
Q 010276 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI 350 (514)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~ 350 (514)
.++..+|.+....++++.|...|++++.++|+.+.+++..|.+... |+.++|+..++++++++|.-.
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 5555555555555555555555555555555555555555554444 555555555555555555443
No 175
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=1.6e-06 Score=82.38 Aligned_cols=153 Identities=18% Similarity=0.110 Sum_probs=98.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHH----------HhcCCCCHHHHHHHH
Q 010276 113 KIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC----------LRHCPFFIEAITALA 182 (514)
Q Consensus 113 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------l~~~p~~~~~~~~l~ 182 (514)
.+-..|...|.+++|.++.+.-.. -.-...++..+.-+...++.+.|+++|+++ +..+|...+-+..-
T Consensus 831 LlNKlyQs~g~w~eA~eiAE~~DR-iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~- 908 (1416)
T KOG3617|consen 831 LLNKLYQSQGMWSEAFEIAETKDR-IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR- 908 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHhhccc-eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh-
Confidence 355677789999999988775211 123456788888888999999999999874 22233222222211
Q ss_pred HhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q 010276 183 ELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAII 262 (514)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 262 (514)
..++..|. .-|......|+.+.|+.+|..+- -|+.+.++..-+
T Consensus 909 --------------------------~~d~~L~~---WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI~C~q 951 (1416)
T KOG3617|consen 909 --------------------------KRDESLYS---WWGQYLESVGEMDAALSFYSSAK--------DYFSMVRIKCIQ 951 (1416)
T ss_pred --------------------------ccchHHHH---HHHHHHhcccchHHHHHHHHHhh--------hhhhheeeEeec
Confidence 11222221 22667777889999998888763 355566666667
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 010276 263 GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL 309 (514)
Q Consensus 263 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 309 (514)
|+.++|...-++ ..+..+.+.+|+.|...|++.+|+..|.++
T Consensus 952 Gk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 952 GKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred cCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 777777655443 345566777777777777777777776655
No 176
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.02 E-value=2.4e-07 Score=76.47 Aligned_cols=186 Identities=16% Similarity=0.107 Sum_probs=94.4
Q ss_pred HHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH---HHHH
Q 010276 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT---YMDE 288 (514)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~ 288 (514)
...++..|...++.|++++|+..|+.+...+|.+ ..+...++.++++.+++++|+...++.+.+.|.++. +++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3444555666666666666666666666665544 345566666666666666666666666666665532 3333
Q ss_pred HHHHHHHh--------CChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHH
Q 010276 289 YAMLLKVK--------CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLL 360 (514)
Q Consensus 289 l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (514)
.|.++... .-...|...++..+...|++.-+-.....+ ..+... -..--..+|..|
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i----------~~~~d~------LA~~Em~IaryY 177 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI----------VKLNDA------LAGHEMAIARYY 177 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH----------HHHHHH------HHHHHHHHHHHH
Confidence 33332221 011223333333344444332211111000 000000 011123456666
Q ss_pred HhcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 010276 361 LSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS 416 (514)
Q Consensus 361 ~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 416 (514)
.+.|.+..|+.-++.+++..|+. +++..+..+|...|-.++|...-.-.-...|++
T Consensus 178 ~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 178 LKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 77777777777777776665553 456666666666666666655544333334443
No 177
>PRK11906 transcriptional regulator; Provisional
Probab=99.02 E-value=4.3e-08 Score=88.02 Aligned_cols=108 Identities=16% Similarity=0.105 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 010276 334 GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA 412 (514)
Q Consensus 334 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 412 (514)
+|....+++++++|.++.++..+|.+....++++.|...|++++.++|+. .+|+..|.+..-.|+.++|.+.+++++++
T Consensus 322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 322 KALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 55666666666666666666666666666666666666666666666666 55666666666666666666666666666
Q ss_pred CCCCHHHHHHHHH--HHHhcCCChHHHHHHHHH
Q 010276 413 MPQSAKALKLVGD--VHASNASGREKAKKFYES 443 (514)
Q Consensus 413 ~p~~~~~~~~l~~--~~~~~~~~~~~A~~~~~~ 443 (514)
+|.-..+-...-. .|.. ...++|+..|-+
T Consensus 402 sP~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 432 (458)
T PRK11906 402 EPRRRKAVVIKECVDMYVP--NPLKNNIKLYYK 432 (458)
T ss_pred CchhhHHHHHHHHHHHHcC--CchhhhHHHHhh
Confidence 6654333222222 2222 445556655544
No 178
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.01 E-value=1.6e-08 Score=86.81 Aligned_cols=105 Identities=15% Similarity=0.208 Sum_probs=91.6
Q ss_pred hHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC---HHHHHHH
Q 010276 217 HRYVEAQCC-IASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI---MTYMDEY 289 (514)
Q Consensus 217 ~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l 289 (514)
..|..|..+ +..|+|++|+..|+..++.+|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 345556665 56799999999999999999988 5899999999999999999999999999888775 7888999
Q ss_pred HHHHHHhCChhHHHHHHHHHhhcCCCChHHHH
Q 010276 290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFV 321 (514)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 321 (514)
|.++...|++++|...|+++++..|++..+..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 99999999999999999999999998875543
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.00 E-value=2.8e-08 Score=94.20 Aligned_cols=73 Identities=18% Similarity=0.027 Sum_probs=42.7
Q ss_pred cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 010276 346 DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAK 418 (514)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 418 (514)
+|.++.++..+|......|++++|...+++++.++|+..+|..+|.++...|++++|++.|++++.++|.++.
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 4444455555555555556666666666666666664455566666666666666666666666666665543
No 180
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.99 E-value=1.6e-08 Score=86.76 Aligned_cols=102 Identities=15% Similarity=0.240 Sum_probs=69.5
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC---hHHHH
Q 010276 384 RSYQGLVHSY-LQFSKVKEALYAAREAMKAMPQS---AKALKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAAL 456 (514)
Q Consensus 384 ~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~ 456 (514)
..++..+..+ ...|++++|+..|+..++.+|++ +.+++.+|.+|... |++++|+..|+++++..|++ +++++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~-g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNK-GKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 3444444443 45567777777777777777766 46777777777776 77777777777777666653 55677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276 457 ALAELHVIEGRNGDAVSLLERYLKDWADDS 486 (514)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 486 (514)
.+|.++...|++++|...|+++++..|++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 777777777777777777777777777654
No 181
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.99 E-value=2.1e-08 Score=90.67 Aligned_cols=118 Identities=25% Similarity=0.262 Sum_probs=73.5
Q ss_pred HHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHH
Q 010276 358 NLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKA 437 (514)
Q Consensus 358 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A 437 (514)
..+...++++.|+..+++..+.+|+. ...++.++...++-.+|+..+.+++...|.+...+...+..+... ++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k-~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK-KKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHH
Confidence 33444556666666666666555542 334556666666666666666666666666666666666666665 666666
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHH
Q 010276 438 KKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY 478 (514)
Q Consensus 438 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 478 (514)
+...++++...|++...|+.|+.+|...|+++.|+..++.+
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 66666666666666666666666666666666666555543
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.98 E-value=5e-08 Score=86.17 Aligned_cols=126 Identities=22% Similarity=0.253 Sum_probs=71.0
Q ss_pred HHHHHHh-cCHHHHHHHHHHHHHhCCC--c----HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC-------HHHHH
Q 010276 222 AQCCIAS-NDYKGGLELFAELLQRFPN--N----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI-------MTYMD 287 (514)
Q Consensus 222 a~~~~~~-~~~~~A~~~~~~~~~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~ 287 (514)
|.++... |++++|++.|+++...... . ..++..+|.++...|+|++|++.|+++....-.+ ...+.
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 5566666 6777777777777653211 1 3456677777888888888888887776643211 12345
Q ss_pred HHHHHHHHhCChhHHHHHHHHHhhcCCCCh---H--HHHHHHHHHhh---cChhHHHHHHHHHHHhcc
Q 010276 288 EYAMLLKVKCDYSKLSKLVHDLLSIDPSRP---E--VFVALSVLWER---KDERGALSYAEKSIRIDE 347 (514)
Q Consensus 288 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~--~~~~l~~~~~~---~~~~~A~~~~~~~~~~~~ 347 (514)
..+.++...|++..|...+++....+|... + ....+-..+.. ..+.+++.-|++..+++|
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 566677777788888888877777766432 2 22233333443 334466666665554444
No 183
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.95 E-value=2.1e-08 Score=83.40 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=100.3
Q ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCC
Q 010276 44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGE 123 (514)
Q Consensus 44 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 123 (514)
.-.|..|-.++..|+|..|...|..-++.+|+++ -.+.++|.||.+++.+|+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~----------------------------~~~nA~yWLGe~~y~qg~ 193 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNST----------------------------YTPNAYYWLGESLYAQGD 193 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc----------------------------ccchhHHHHHHHHHhccc
Confidence 3489999999999999999999999999999876 558899999999999999
Q ss_pred HHHHHHHHhcC----CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHH
Q 010276 124 TKAAIVEMEGI----PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITAL 181 (514)
Q Consensus 124 ~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 181 (514)
+++|...|..+ +..|..+++++-+|.+...+|+.++|...|+++++..|+...+...-
T Consensus 194 y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 194 YEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred chHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999988874 56688999999999999999999999999999999999988877654
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.94 E-value=4.3e-08 Score=72.49 Aligned_cols=95 Identities=19% Similarity=0.134 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 010276 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ---SAKALKLV 423 (514)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l 423 (514)
.+++.+|.++-..|+.++|+..|++++....+. .++..+|..+...|++++|+..+++.+...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 456777777777788888888888777764332 46777777777777777777777777777776 56666777
Q ss_pred HHHHHhcCCChHHHHHHHHHHHh
Q 010276 424 GDVHASNASGREKAKKFYESALR 446 (514)
Q Consensus 424 ~~~~~~~~~~~~~A~~~~~~a~~ 446 (514)
+.++... |+.++|+..+-.++.
T Consensus 82 Al~L~~~-gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNL-GRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHC-CCHHHHHHHHHHHHH
Confidence 7777776 777777777766654
No 185
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.92 E-value=5.2e-08 Score=81.17 Aligned_cols=106 Identities=15% Similarity=0.162 Sum_probs=97.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q 010276 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI---MTYMDEYAM 291 (514)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~ 291 (514)
.|..|.-++..|+|..|...|...++..|++ +.++++||.+++.+|++++|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6788999999999999999999999999987 7899999999999999999999999999988776 689999999
Q ss_pred HHHHhCChhHHHHHHHHHhhcCCCChHHHHHH
Q 010276 292 LLKVKCDYSKLSKLVHDLLSIDPSRPEVFVAL 323 (514)
Q Consensus 292 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 323 (514)
+...+|+.++|...++++++..|+.+.+....
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999987765443
No 186
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.91 E-value=5.7e-08 Score=87.87 Aligned_cols=120 Identities=14% Similarity=0.117 Sum_probs=108.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Q 010276 387 QGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG 466 (514)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 466 (514)
..+...+...++++.|+..+++..+.+|+ +...++.++... ++..+|++.+.++++..|.+...+...+..+...+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~-~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLM-NEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhc-CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 34556666788999999999999988875 556789999887 89999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccHHHHHHHHHH
Q 010276 467 RNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEA 510 (514)
Q Consensus 467 ~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 510 (514)
+++.|+...+++++..|++ ..|+.|+.+|..+|++++|+..+..
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 9999999999999999998 4999999999999999999987653
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.90 E-value=4.9e-07 Score=69.89 Aligned_cols=151 Identities=18% Similarity=0.219 Sum_probs=106.9
Q ss_pred HHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHhcCCChHHH
Q 010276 359 LLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMK-AMPQSAKALKLVGDVHASNASGREKA 437 (514)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~~~~~~~A 437 (514)
...+.=+++.......+.+...|.....+.++....+.|++.+|...|++++. +.-+++..+..++...... +++..|
T Consensus 65 a~~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~-~~~A~a 143 (251)
T COG4700 65 ALQQKLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI-QEFAAA 143 (251)
T ss_pred HHHHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh-ccHHHH
Confidence 33444455555555666666667777777777777777777777777777775 5566677777777777777 777777
Q ss_pred HHHHHHHHhhCCC--ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHhccHHHHHHHHHH
Q 010276 438 KKFYESALRLEPG--YLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEA 510 (514)
Q Consensus 438 ~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 510 (514)
...+++..+.+|. .++....+|+.+...|++.+|...|+.++...|+.......+..+.++|+..+|...+..
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 7777777777664 355667777777777777777777777777777777777777777777776666655443
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.90 E-value=8e-09 Score=69.30 Aligned_cols=66 Identities=30% Similarity=0.356 Sum_probs=47.9
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 010276 226 IASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM 291 (514)
Q Consensus 226 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 291 (514)
+..|++++|+..|++++..+|+++.+++.+|.++...|++++|...+++++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456777777777777777777777777777777777777777777777777777776666655543
No 189
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=4.5e-05 Score=68.43 Aligned_cols=434 Identities=14% Similarity=0.101 Sum_probs=262.2
Q ss_pred hHHHHHHHHhhHhhhh--hHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHH
Q 010276 42 KAENLIILGDSLFRDR--EYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF 119 (514)
Q Consensus 42 ~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 119 (514)
-+.++.-+|+.+...| +.+.++++++..+...|.+. -....+.++|..++
T Consensus 6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~----------------------------veart~LqLg~lL~ 57 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFL----------------------------VEARTHLQLGALLL 57 (629)
T ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHH----------------------------HHHHHHHHHHHHHH
Confidence 3557778889888899 99999999999887755221 12334556776665
Q ss_pred h-cCCHHHHHHHHhcC----CCCCc----cHHHHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCHH----HHHHHHHhc
Q 010276 120 A-LGETKAAIVEMEGI----PSKAR----NLQMSLLMAKLYRNSR-HNRGAVACYKECLRHCPFFIE----AITALAELG 185 (514)
Q Consensus 120 ~-~g~~~~A~~~~~~~----~~~~~----~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~ 185 (514)
. ..+++.|...+++. ..-|. ..++..+++.+|.... .+..|...++++++.....+. ....|+++.
T Consensus 58 ~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~ 137 (629)
T KOG2300|consen 58 RYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLH 137 (629)
T ss_pred HHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Confidence 4 67888888887772 11133 3456678899988877 788999999999987655442 235567777
Q ss_pred cCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHH--HHHHHHHhcC---HHHHHHHHHHHHHhCCCcH---H----HHH
Q 010276 186 ATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYV--EAQCCIASND---YKGGLELFAELLQRFPNNI---H----ILL 253 (514)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~---~~~A~~~~~~~~~~~p~~~---~----~~~ 253 (514)
.-..++..+.+-...-..... ..........+. .+.+.....+ ...+.....++.+....++ + .+.
T Consensus 138 ~idkD~~sA~elLavga~sAd--~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl 215 (629)
T KOG2300|consen 138 IIDKDFPSALELLAVGAESAD--HICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYL 215 (629)
T ss_pred hhhccchhHHHHHhccccccc--hhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHH
Confidence 777777666655322211111 111122222222 2333333333 3344555555555433332 1 222
Q ss_pred HHHHH-HHHhCChHHHHHHHHHH---Hh-hCCC-----------C------------HHHHHHHHHH--HHHhCChhHHH
Q 010276 254 EMAKV-DAIIGKNDEAILNFEKV---RS-IDPY-----------I------------MTYMDEYAML--LKVKCDYSKLS 303 (514)
Q Consensus 254 ~la~~-~~~~~~~~~A~~~~~~~---~~-~~~~-----------~------------~~~~~~l~~~--~~~~~~~~~A~ 303 (514)
.+-.+ |...|+...+...+++. ++ +.+. + ..++..+..+ -...|-+++|.
T Consensus 216 ~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~ 295 (629)
T KOG2300|consen 216 VLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQ 295 (629)
T ss_pred HHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHH
Confidence 33333 33457766665555543 22 1221 0 0111111111 12346677777
Q ss_pred HHHHHHhhcC------CCChHHHHHHHH--------HHhh-cChhHHHHHHHHHHHhc---cc-------CchhHHHHHH
Q 010276 304 KLVHDLLSID------PSRPEVFVALSV--------LWER-KDERGALSYAEKSIRID---ER-------HIPGYIMKGN 358 (514)
Q Consensus 304 ~~~~~~~~~~------~~~~~~~~~l~~--------~~~~-~~~~~A~~~~~~~~~~~---~~-------~~~~~~~~~~ 358 (514)
++-++++... |....+...+-. +-.. |++.+|++....+.+.. |. .+.++..+|.
T Consensus 296 K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGl 375 (629)
T KOG2300|consen 296 KYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGL 375 (629)
T ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhh
Confidence 7777766432 112222222211 1111 99999988887776643 33 2345677888
Q ss_pred HHHhcCChHHHHHHHHHhHhhcCCh--H--HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----------HHHHHHHH
Q 010276 359 LLLSMKRPEAAVIAFRGAQELRPDL--R--SYQGLVHSYLQFSKVKEALYAAREAMKAMPQS----------AKALKLVG 424 (514)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~~~~--~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----------~~~~~~l~ 424 (514)
.....+.++.|...|..+.+..... . .-.+++..|.+.|+-+.-.+.++. +.|.+ ..+++..|
T Consensus 376 ys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~g 452 (629)
T KOG2300|consen 376 YSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYG 452 (629)
T ss_pred HhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHH
Confidence 8888899999999999998876554 2 346789999998877655554443 34442 34567777
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHcCChhHHHHHHHHHHhhC---CCch----HHHHH
Q 010276 425 DVHASNASGREKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLKDW---ADDS----LHVKL 491 (514)
Q Consensus 425 ~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~l 491 (514)
...+.. +++.+|...+.+.++..... .-.+..|+.+....|+..++.+...-++... |+.. ....+
T Consensus 453 lfaf~q-n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~ 531 (629)
T KOG2300|consen 453 LFAFKQ-NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSIL 531 (629)
T ss_pred HHHHHh-ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHH
Confidence 777787 99999999999999875211 2255668889999999999999988887765 4443 22234
Q ss_pred HHHHHHhcc--HHHHHHHHH
Q 010276 492 AQVFAATNM--LQEALSHYE 509 (514)
Q Consensus 492 ~~~~~~~g~--~~~A~~~~~ 509 (514)
-.+|...|+ .++..+.|.
T Consensus 532 ~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 532 TDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred HHHHHHhCcchhhHHHHHHH
Confidence 566777777 555554443
No 190
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.88 E-value=2.7e-09 Score=90.22 Aligned_cols=226 Identities=11% Similarity=0.040 Sum_probs=160.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHH
Q 010276 144 SLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQ 223 (514)
Q Consensus 144 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (514)
.-..|.-|+++|+|++|+.+|.+++..+|.++..+... |.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NR----------------------------------------A~ 139 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINR----------------------------------------AL 139 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhH----------------------------------------HH
Confidence 35678999999999999999999999999887666543 88
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHH
Q 010276 224 CCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLS 303 (514)
Q Consensus 224 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 303 (514)
.|++...|..|..-++.++..+.....+|...+.+-..+|...+|.+.++.++.+.|.+.+..-.++.+-. ..++.
T Consensus 140 AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~ 215 (536)
T KOG4648|consen 140 AYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS----LRERK 215 (536)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhh
Confidence 89999999999999999999998889999999999999999999999999999999998776655554432 11111
Q ss_pred HHHHHHhhcCCCChHHHHHH---------HHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHH
Q 010276 304 KLVHDLLSIDPSRPEVFVAL---------SVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF 373 (514)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l---------~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 373 (514)
-+....|....+.... |..+.. |.++.++.++.+-+.....+.....+ +..+.+..+++.++...
T Consensus 216 ----I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~ 290 (536)
T KOG4648|consen 216 ----IATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEE 290 (536)
T ss_pred ----HHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHH
Confidence 1111222222222222 222223 56666666665554444333333333 66677778888888888
Q ss_pred HHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q 010276 374 RGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAK 418 (514)
Q Consensus 374 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 418 (514)
.+++..+|.. ......+.+-.-.|...++...++.++...|.+..
T Consensus 291 ~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~ 336 (536)
T KOG4648|consen 291 VKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVET 336 (536)
T ss_pred HHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeecccccc
Confidence 8887777765 44444555555566777788888888777776543
No 191
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.86 E-value=8e-08 Score=72.05 Aligned_cols=114 Identities=15% Similarity=0.200 Sum_probs=98.4
Q ss_pred ChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHH
Q 010276 38 SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASC 117 (514)
Q Consensus 38 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~ 117 (514)
.+...+..++..|...++.|+|++|++.|+......|..+ -...+.+.++.+
T Consensus 5 ~~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~----------------------------ya~qAqL~l~ya 56 (142)
T PF13512_consen 5 VPDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE----------------------------YAEQAQLDLAYA 56 (142)
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc----------------------------ccHHHHHHHHHH
Confidence 4556677899999999999999999999999999998655 456788999999
Q ss_pred HHhcCCHHHHHHHHhcC----CCCCccHHHHHHHHHHHHhcCC---------------hhhHHHHHHHHHhcCCCCHHHH
Q 010276 118 HFALGETKAAIVEMEGI----PSKARNLQMSLLMAKLYRNSRH---------------NRGAVACYKECLRHCPFFIEAI 178 (514)
Q Consensus 118 ~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~---------------~~~A~~~~~~~l~~~p~~~~~~ 178 (514)
++..|++++|+..+++. +..|.-+-+++..|.++..+.. ..+|...|+++++..|++..+.
T Consensus 57 yy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 57 YYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 99999999999998883 4456677789999999998876 8899999999999999987665
Q ss_pred H
Q 010276 179 T 179 (514)
Q Consensus 179 ~ 179 (514)
.
T Consensus 137 d 137 (142)
T PF13512_consen 137 D 137 (142)
T ss_pred H
Confidence 4
No 192
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=5.2e-08 Score=76.03 Aligned_cols=112 Identities=22% Similarity=0.198 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhhcCCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 010276 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDV 426 (514)
Q Consensus 353 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 426 (514)
+..-|+-++..|+|++|..-|..++.+.|.. ..|.+.|.+.++++.++.|+..+.++++++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 3445778889999999999999999998875 1367888999999999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 010276 427 HASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE 465 (514)
Q Consensus 427 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 465 (514)
|.+. ..+++|+..|.+.++.+|...++....+++--..
T Consensus 178 yek~-ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i 215 (271)
T KOG4234|consen 178 YEKM-EKYEEALEDYKKILESDPSRREAREAIARLPPKI 215 (271)
T ss_pred HHhh-hhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence 9998 9999999999999999998877766666554433
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.85 E-value=9.2e-08 Score=70.75 Aligned_cols=95 Identities=21% Similarity=0.132 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC---ChHHHHHH
Q 010276 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALKLVGDVHASNASGREKAKKFYESALRLEPG---YLGAALAL 458 (514)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l 458 (514)
+++.++.++...|+.++|+.+|++++...+.. ..++..+|..+... |++++|+..+++++...|+ +..+...+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L-G~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNL-GRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 56788888888888888888888888865443 56778888888888 8888888888888888777 66677778
Q ss_pred HHHHHHcCChhHHHHHHHHHHh
Q 010276 459 AELHVIEGRNGDAVSLLERYLK 480 (514)
Q Consensus 459 a~~~~~~g~~~~A~~~~~~~~~ 480 (514)
+.++...|+.++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888877654
No 194
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.83 E-value=3.2e-05 Score=72.94 Aligned_cols=232 Identities=16% Similarity=0.136 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHH------Hhh----CCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChH
Q 010276 250 HILLEMAKVDAIIGKNDEAILNFEKV------RSI----DPYI-MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPE 318 (514)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~------~~~----~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 318 (514)
+.+-..|.++.+..++++|+++|++. +++ .|.. ...-...|.-+...|+++.|+..|-.+-..
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~------ 735 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL------ 735 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH------
Confidence 34555566777777788888877653 222 2322 223344577778888888888877654221
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCC
Q 010276 319 VFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSK 398 (514)
Q Consensus 319 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 398 (514)
...+-.....+++.+|+..++..-..... ...|-.++.-|...|+|+-|.+.|.++-. ...-...|.+.|+
T Consensus 736 -~kaieaai~akew~kai~ildniqdqk~~-s~yy~~iadhyan~~dfe~ae~lf~e~~~-------~~dai~my~k~~k 806 (1636)
T KOG3616|consen 736 -IKAIEAAIGAKEWKKAISILDNIQDQKTA-SGYYGEIADHYANKGDFEIAEELFTEADL-------FKDAIDMYGKAGK 806 (1636)
T ss_pred -HHHHHHHhhhhhhhhhHhHHHHhhhhccc-cccchHHHHHhccchhHHHHHHHHHhcch-------hHHHHHHHhcccc
Confidence 00111122227778888877765443322 34456678888999999999988877621 2233466778889
Q ss_pred HHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHH
Q 010276 399 VKEALYAAREAMKAMPQS-AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER 477 (514)
Q Consensus 399 ~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (514)
|.+|.+.-.++.. |+. ...+...+.-+... |++.+|.+.|-..- .|+. -...|-+.|.+++-+...++
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldeh-gkf~eaeqlyiti~--~p~~------aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEH-GKFAEAEQLYITIG--EPDK------AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhh-cchhhhhheeEEcc--CchH------HHHHHHhhCcchHHHHHHHH
Confidence 9888887776643 433 34445555556666 77766666553210 1111 11233344444444433332
Q ss_pred HHhhCCCc--hHHHHHHHHHHHhccHHHHHHHHHH
Q 010276 478 YLKDWADD--SLHVKLAQVFAATNMLQEALSHYEA 510 (514)
Q Consensus 478 ~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 510 (514)
..|+. +.+..+|.-+...|+...|...|-+
T Consensus 876 ---~h~d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 876 ---HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred ---hChhhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 22332 3555555555555555555555543
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.83 E-value=1.6e-08 Score=67.81 Aligned_cols=53 Identities=34% Similarity=0.406 Sum_probs=25.3
Q ss_pred CChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276 432 SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD 484 (514)
Q Consensus 432 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 484 (514)
|++++|+..|++++..+|+++.+++.+|.++.+.|++++|...+++++...|+
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 44444444444444444444444444444444444444444444444444444
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=1.4e-05 Score=65.79 Aligned_cols=224 Identities=17% Similarity=0.115 Sum_probs=141.5
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC-------------------HHHHHHHHHHHHHhCChhHHHHHHHH
Q 010276 248 NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI-------------------MTYMDEYAMLLKVKCDYSKLSKLVHD 308 (514)
Q Consensus 248 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------~~~~~~l~~~~~~~~~~~~A~~~~~~ 308 (514)
+...|...-.++.+...+++|...+...-+.+..+ .......+.+....|...+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34566666667777777777776666554443211 12233445556666666665544443
Q ss_pred HhhcCCCChHHHHHHHHHHhhcCh-hHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh--HH
Q 010276 309 LLSIDPSRPEVFVALSVLWERKDE-RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL--RS 385 (514)
Q Consensus 309 ~~~~~~~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~ 385 (514)
+.... ..+-.....+.. +..+..+++-+ ..+.+.+..++.-.|.|.-....+.+.++.+|.. ..
T Consensus 148 L~~~V-------~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L 214 (366)
T KOG2796|consen 148 LKTVV-------SKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL 214 (366)
T ss_pred HHHHH-------HHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence 32210 011111111222 33444444432 3345667777777888888888888888877554 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHH
Q 010276 386 YQGLVHSYLQFSKVKEALYAAREAMKAM------PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALA 459 (514)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 459 (514)
...+|.+..+.|+.+.|..++++.-+.. .....+..+.+.++.-. +++.+|...|.+.+..+|.++.+..+.|
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~-nn~a~a~r~~~~i~~~D~~~~~a~NnKA 293 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQ-NNFAEAHRFFTEILRMDPRNAVANNNKA 293 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecc-cchHHHHHHHhhccccCCCchhhhchHH
Confidence 5677888888888888888887554322 23345566677777776 7888888888888888888888888888
Q ss_pred HHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276 460 ELHVIEGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (514)
.|....|+..+|++.++.++...|..
T Consensus 294 LcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 294 LCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 88888888888888888888888865
No 197
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.79 E-value=4.3e-07 Score=68.20 Aligned_cols=83 Identities=18% Similarity=0.225 Sum_probs=69.9
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH---HHHHHH
Q 010276 216 LHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM---TYMDEY 289 (514)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l 289 (514)
..++..|...+..|+|.+|++.|+.+....|.. ..+.+.++.+|+..+++++|+..+++.++++|.++ .+++..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 345677999999999999999999999988865 67888999999999999999999999999998874 467777
Q ss_pred HHHHHHhCC
Q 010276 290 AMLLKVKCD 298 (514)
Q Consensus 290 ~~~~~~~~~ 298 (514)
|.++..+..
T Consensus 91 gL~~~~~~~ 99 (142)
T PF13512_consen 91 GLSYYEQDE 99 (142)
T ss_pred HHHHHHHhh
Confidence 777776654
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.78 E-value=5.3e-08 Score=66.37 Aligned_cols=65 Identities=25% Similarity=0.179 Sum_probs=35.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHH
Q 010276 391 HSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAAL 456 (514)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 456 (514)
.+|...+++++|+.++++++..+|+++..+..+|.++... |++.+|...|+++++..|+++.+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQL-GRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHh-ccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 3455555555555555555555555555555555555555 5555555555555555555544433
No 199
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=2.3e-07 Score=72.47 Aligned_cols=107 Identities=16% Similarity=0.082 Sum_probs=94.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHH
Q 010276 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQS-----AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAE 460 (514)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 460 (514)
+..-|.-++..|+|++|..-|..++...|.. ...+.+.|.++.++ +.++.|+....++++++|.+..++...|.
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl-~k~e~aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKL-RKWESAIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHh-hhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence 4455888899999999999999999999875 45678899999998 99999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHH
Q 010276 461 LHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQ 493 (514)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~ 493 (514)
+|.++..+++|++-|+++++.+|... +.-..+.
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 99999999999999999999999863 4443333
No 200
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=1.9e-05 Score=70.84 Aligned_cols=246 Identities=14% Similarity=0.024 Sum_probs=143.9
Q ss_pred HHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHh---hcccCchhhhhhhhhh
Q 010276 11 LIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQ---YYKIVPKQNSTSSRSS 87 (514)
Q Consensus 11 l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~ 87 (514)
++....|.+|+.+...+++....- .....+...++.-..+.....-++|+.+..-.-+ .....+.....-+...
T Consensus 110 ~yh~~~~g~a~~~~~~lv~r~e~l---e~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~ 186 (696)
T KOG2471|consen 110 FYHHEENGSAMQLSSNLVSRTESL---ESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNL 186 (696)
T ss_pred eeeHhhcchHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhh
Confidence 344556777777777666533211 1112222334445556666667777765543222 1111110000011111
Q ss_pred hhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CccHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010276 88 LSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSK-ARNLQMSLLMAKLYRNSRHNRGAVACYKE 166 (514)
Q Consensus 88 ~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 166 (514)
.+.+....|...+.... ...++.....+.++...+...+....+.+... .+++.+.++.++.++..|++.+|.+.+..
T Consensus 187 ~kt~s~~aAe~s~~~a~-~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~ 265 (696)
T KOG2471|consen 187 LKTLSPSAAERSFSTAD-LKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLV 265 (696)
T ss_pred cccCCcchhcccchhhc-cchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHh
Confidence 22222222333221111 12344455566777788888888777775333 67888999999999999999999998765
Q ss_pred HH-hcCCC---CHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHH
Q 010276 167 CL-RHCPF---FIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELL 242 (514)
Q Consensus 167 ~l-~~~p~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 242 (514)
.- ...|. .++... .+....+|.+.++.|.|.-+..+|.+++
T Consensus 266 sni~~~~g~~~T~q~~~-----------------------------------cif~NNlGcIh~~~~~y~~~~~~F~kAL 310 (696)
T KOG2471|consen 266 SNIHKEAGGTITPQLSS-----------------------------------CIFNNNLGCIHYQLGCYQASSVLFLKAL 310 (696)
T ss_pred cccccccCccccchhhh-----------------------------------heeecCcceEeeehhhHHHHHHHHHHHH
Confidence 32 22222 111110 0111233677777788888888887777
Q ss_pred Hh---------CC---------CcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 010276 243 QR---------FP---------NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV 295 (514)
Q Consensus 243 ~~---------~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (514)
+. .| ..-+++++.|..+...|++-.|.++|.++......+|..|..++.+...
T Consensus 311 ~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 311 RNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 40 11 2356888889999999999999999999999888889999999888765
No 201
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.74 E-value=8.7e-08 Score=65.27 Aligned_cols=68 Identities=21% Similarity=0.302 Sum_probs=48.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEY 289 (514)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 289 (514)
..++...+++++|+.++++++..+|+++..+..+|.++...|++++|...++++++..|+++.+....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 34566677777777777777777777777777777777777777777777777777777766554433
No 202
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=2.9e-05 Score=69.65 Aligned_cols=316 Identities=15% Similarity=0.122 Sum_probs=188.4
Q ss_pred ChhHHHHHHHHHHHhcCCHHHHHHHHhcC--CCCCc--------cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCH
Q 010276 106 NENEVKYKIASCHFALGETKAAIVEMEGI--PSKAR--------NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFI 175 (514)
Q Consensus 106 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~--~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 175 (514)
+.+...+..+..++..|++..|.+.+... ...+. .--.|..+|.++++.|.|.-+..+|.++++.
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N----- 312 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRN----- 312 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHH-----
Confidence 55677888899999999999999998874 22222 2234578999999999999999999999971
Q ss_pred HHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 010276 176 EAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEM 255 (514)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 255 (514)
....|.. +.... ..-...........|..|..++..|+.-.|.++|.++...+..+|.+|..+
T Consensus 313 -~c~qL~~-g~~~~---------------~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRl 375 (696)
T KOG2471|consen 313 -SCSQLRN-GLKPA---------------KTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRL 375 (696)
T ss_pred -HHHHHhc-cCCCC---------------cceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 1111111 00000 000112234455678889999999999999999999999999999999999
Q ss_pred HHHHHHhCC---hHHHHHHHHH--------------HHhh-------CCCC---HHHHHHHHHHHHHhCCh-----hHHH
Q 010276 256 AKVDAIIGK---NDEAILNFEK--------------VRSI-------DPYI---MTYMDEYAMLLKVKCDY-----SKLS 303 (514)
Q Consensus 256 a~~~~~~~~---~~~A~~~~~~--------------~~~~-------~~~~---~~~~~~l~~~~~~~~~~-----~~A~ 303 (514)
|.+.+...+ .++......+ .+-+ .|.. +..-..++.+..+.+-+ ..--
T Consensus 376 AEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~ 455 (696)
T KOG2471|consen 376 AECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLG 455 (696)
T ss_pred HHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcch
Confidence 998875322 1111111111 0000 0000 11112222222221100 0000
Q ss_pred HHHHHHh-----------------------------hcCCCCh----H-------HHHHHHHHHhh-cChhHHHHHHHHH
Q 010276 304 KLVHDLL-----------------------------SIDPSRP----E-------VFVALSVLWER-KDERGALSYAEKS 342 (514)
Q Consensus 304 ~~~~~~~-----------------------------~~~~~~~----~-------~~~~l~~~~~~-~~~~~A~~~~~~~ 342 (514)
..+.-+. ...|..| + ++-..+.+-.. |+.-.|+..-++.
T Consensus 456 ~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kL 535 (696)
T KOG2471|consen 456 SILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKL 535 (696)
T ss_pred hhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHH
Confidence 0000000 0000111 1 11222222222 8888888888888
Q ss_pred HHhcccCchhHHHHHHH-----HHhcCChHHHHHHHHHhH------h-----------------hcCCh-----------
Q 010276 343 IRIDERHIPGYIMKGNL-----LLSMKRPEAAVIAFRGAQ------E-----------------LRPDL----------- 383 (514)
Q Consensus 343 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~A~~~~~~~~------~-----------------~~~~~----------- 383 (514)
++. |+...++..+|.+ ++.+.+..+|...+.--. . ++|..
T Consensus 536 Lq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv 614 (696)
T KOG2471|consen 536 LQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSV 614 (696)
T ss_pred Hhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCH
Confidence 765 3445565555554 456788888877665411 0 11110
Q ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010276 384 -----RSYQGLVHSYLQFSKVKEALYAAREAMKAMP--QSAKALKLVGDVHASNASGREKAKKFYESAL 445 (514)
Q Consensus 384 -----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~ 445 (514)
..++++|.++.-+|++++|..++..+..+-| .++.+....-.+-... |+...|...+++.-
T Consensus 615 ~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~-G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 615 EEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLML-GRSQDALARLKQCT 682 (696)
T ss_pred HHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhc-CCCcchHHHHHhcc
Confidence 1368999999999999999999999988777 3455554444444555 99999998888753
No 203
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.67 E-value=7.9e-07 Score=64.26 Aligned_cols=99 Identities=16% Similarity=0.025 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCh----HHHHHHHHH
Q 010276 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYL----GAALALAEL 461 (514)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~ 461 (514)
+-.-|......|+.+.|++.|.+++.+.|..+.++++.+..+.-. |+.++|+..+.+++++..+.. .++...|.+
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq-~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQ-GDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHc-CChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 455688888899999999999999999999999999999999988 999999999999999864432 367788999
Q ss_pred HHHcCChhHHHHHHHHHHhhCCCc
Q 010276 462 HVIEGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 462 ~~~~g~~~~A~~~~~~~~~~~~~~ 485 (514)
|...|+.+.|..-|+.+.++...-
T Consensus 125 yRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhCCHH
Confidence 999999999999999998887553
No 204
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.67 E-value=7e-05 Score=70.77 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=43.2
Q ss_pred HhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010276 119 FALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC 167 (514)
Q Consensus 119 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 167 (514)
+..|+++.|...++.....|.....|..++.+....|+.--|..+|..+
T Consensus 455 id~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai 503 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI 503 (1636)
T ss_pred cccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4678999999999999888999999999999999999988888887654
No 205
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=6.3e-05 Score=60.87 Aligned_cols=136 Identities=15% Similarity=0.167 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHhcccCch------hHHHHHHHHHhc-CChHHHHHHHHHhHhhcCCh-------
Q 010276 318 EVFVALSVLWERKDERGALSYAEKSIRIDERHIP------GYIMKGNLLLSM-KRPEAAVIAFRGAQELRPDL------- 383 (514)
Q Consensus 318 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~------- 383 (514)
..+...+.+|...++.+|+.++++++++..+-.. .+..+|.+|... .++++|+.+|+++-+.....
T Consensus 75 t~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN 154 (288)
T KOG1586|consen 75 TTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN 154 (288)
T ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 3445556677778888888888888887655332 345778887665 88999999999987764432
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHH
Q 010276 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA-------KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA 454 (514)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 454 (514)
..+...+..-...++|.+|+..|++.....-+++ ..++.-|.|+... .+.-.+...+++-.+++|.....
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~-~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK-ADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc-ccHHHHHHHHHHHHhcCCccccc
Confidence 3456667777888999999999999887655543 3445667777776 88888888888888899976553
No 206
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=0.0005 Score=62.03 Aligned_cols=368 Identities=15% Similarity=0.063 Sum_probs=222.8
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHhcCCCC--Cc--cHHHHHHHHHHHH-hcCChhhHHHHHHHHHhcCCCCHHHHHHH
Q 010276 109 EVKYKIASCHFALG--ETKAAIVEMEGIPSK--AR--NLQMSLLMAKLYR-NSRHNRGAVACYKECLRHCPFFIEAITAL 181 (514)
Q Consensus 109 ~~~~~la~~~~~~g--~~~~A~~~~~~~~~~--~~--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 181 (514)
.++..+|..+...| +...++..++.+... |. .......+|.+++ ...+.+.|...++++..+...-+..+.
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fyd-- 85 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYD-- 85 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHh--
Confidence 45677888888888 889999999986332 22 3445677777654 578999999999998754322111110
Q ss_pred HHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCcH----HHHHHHH
Q 010276 182 AELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASN-DYKGGLELFAELLQRFPNNI----HILLEMA 256 (514)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~----~~~~~la 256 (514)
..+...-.++.++.... .+..+...++++++.....| ...+.++
T Consensus 86 -------------------------------vKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLa 134 (629)
T KOG2300|consen 86 -------------------------------VKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLA 134 (629)
T ss_pred -------------------------------hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 01111234477776665 78889999999998766654 4667889
Q ss_pred HHHHHhCChHHHHHHHHHHHhh-CCCC---HHHHHHH--HHHHHHhCC---hhHHHHHHHHHhhcCCCChH-------HH
Q 010276 257 KVDAIIGKNDEAILNFEKVRSI-DPYI---MTYMDEY--AMLLKVKCD---YSKLSKLVHDLLSIDPSRPE-------VF 320 (514)
Q Consensus 257 ~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~l--~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~-------~~ 320 (514)
.++.-..++..|++.+.-..+. ++.. ....+.+ +.++....+ ...+.....++.+....++. .+
T Consensus 135 ql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFy 214 (629)
T KOG2300|consen 135 QLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFY 214 (629)
T ss_pred HHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHH
Confidence 9999999999998885433221 1111 1122222 223333333 34445555555554433332 22
Q ss_pred HHHHHHHhh--cChhHHHHHHH---HHHHh-ccc-----------C-ch--hHHH----HHHHH-------HhcCChHHH
Q 010276 321 VALSVLWER--KDERGALSYAE---KSIRI-DER-----------H-IP--GYIM----KGNLL-------LSMKRPEAA 369 (514)
Q Consensus 321 ~~l~~~~~~--~~~~~A~~~~~---~~~~~-~~~-----------~-~~--~~~~----~~~~~-------~~~~~~~~A 369 (514)
..+...|.. |+...+...++ +.+.. .+. + +. .|.- -+.+| ...|-+++|
T Consensus 215 l~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~ 294 (629)
T KOG2300|consen 215 LVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKA 294 (629)
T ss_pred HHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHH
Confidence 233333333 66654444444 33332 111 0 00 0110 01111 234667777
Q ss_pred HHHHHHhHhhcCC-------hH--------HHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCC-------CHHHHHHHH
Q 010276 370 VIAFRGAQELRPD-------LR--------SYQGLVHSYLQFSKVKEALYAAREAMKA---MPQ-------SAKALKLVG 424 (514)
Q Consensus 370 ~~~~~~~~~~~~~-------~~--------~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p~-------~~~~~~~l~ 424 (514)
.++-++++..... .+ .+-.++.+-.-.|++.+|++....+.+. .|. .+.+++.+|
T Consensus 295 ~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlG 374 (629)
T KOG2300|consen 295 QKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLG 374 (629)
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHh
Confidence 7777777654211 12 1345566777789999999888777653 344 245667788
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhCCC-C--hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-----------hHHHH
Q 010276 425 DVHASNASGREKAKKFYESALRLEPG-Y--LGAALALAELHVIEGRNGDAVSLLERYLKDWADD-----------SLHVK 490 (514)
Q Consensus 425 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~ 490 (514)
...... +.++.|...|..+.+.-.. + .....++|..|.+.|+-+.-.+.++.. .|.+ .+++.
T Consensus 375 lys~sv-~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l~a~~~~v 450 (629)
T KOG2300|consen 375 LYSHSV-NCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRLEASILYV 450 (629)
T ss_pred hHhhhc-chHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHHHHHHHHHHH
Confidence 777777 8899999999999886432 2 224567899999988776655555543 3331 47777
Q ss_pred HHHHHHHhccHHHHHHHHHHHhc
Q 010276 491 LAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 491 l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
.|...+.+|++.||.....+.++
T Consensus 451 ~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 451 YGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHHHHhccHHHHHHHHHHHHh
Confidence 88888899999999998888775
No 207
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.54 E-value=2.4e-06 Score=61.87 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHH
Q 010276 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS----AKALKLVGDVH 427 (514)
Q Consensus 353 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~ 427 (514)
+-..|..+...|+.+.|++.|.+++.+.|.. .+|++.+..+.-+|+.++|+..+++++++..+. ..++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 3456888888999999999999999999988 789999999999999999999999999876543 35678889999
Q ss_pred HhcCCChHHHHHHHHHHHhhCCC
Q 010276 428 ASNASGREKAKKFYESALRLEPG 450 (514)
Q Consensus 428 ~~~~~~~~~A~~~~~~a~~~~~~ 450 (514)
... |+.+.|...|+.+-++...
T Consensus 126 Rl~-g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLL-GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHh-CchHHHHHhHHHHHHhCCH
Confidence 988 9999999999999888654
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.53 E-value=9.7e-07 Score=79.44 Aligned_cols=67 Identities=24% Similarity=0.175 Sum_probs=52.3
Q ss_pred cCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 010276 380 RPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKA---LKLVGDVHASNASGREKAKKFYESALRL 447 (514)
Q Consensus 380 ~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~~~~~~~A~~~~~~a~~~ 447 (514)
+|++ .+|+++|.+|...|++++|+..|+++++++|++..+ |+++|.+|..+ |+.++|+.++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L-Gr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYR-EEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 4555 677888888888888888888888888888887744 78888888887 8888888888888876
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=0.00023 Score=58.80 Aligned_cols=216 Identities=12% Similarity=0.062 Sum_probs=152.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-------------CCc-----H-HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC
Q 010276 222 AQCCIASNDYKGGLELFAELLQRF-------------PNN-----I-HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI 282 (514)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~-------------p~~-----~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 282 (514)
-.++.+...+++|..-+...-+.+ |+. | ......|.+....|+..+.+.-+......
T Consensus 76 ~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~~---- 151 (366)
T KOG2796|consen 76 LALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKTV---- 151 (366)
T ss_pred HHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH----
Confidence 445556666777766655544322 221 1 22334466666777777776655554332
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhc-ccCchhHHHHHHHH
Q 010276 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRID-ERHIPGYIMKGNLL 360 (514)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 360 (514)
..............+..++.+++-+. .+.+.+..++.. |.|.-.+..+.+.++.+ |..+.....+|.+.
T Consensus 152 ---V~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~ 222 (366)
T KOG2796|consen 152 ---VSKILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRIS 222 (366)
T ss_pred ---HHHHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 11222233333333555555555433 334444444444 88999999999999988 56677788899999
Q ss_pred HhcCChHHHHHHHHHhHhhcCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCC
Q 010276 361 LSMKRPEAAVIAFRGAQELRPD-------LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASG 433 (514)
Q Consensus 361 ~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 433 (514)
++.|+.+.|..+|+++-+.... ..+..+.+.++.-.+++.+|...+.+++..+|.++.+.++.|.|+... |+
T Consensus 223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl-g~ 301 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL-GK 301 (366)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH-HH
Confidence 9999999999999976543221 145677888899999999999999999999999999999999999998 99
Q ss_pred hHHHHHHHHHHHhhCCCC
Q 010276 434 REKAKKFYESALRLEPGY 451 (514)
Q Consensus 434 ~~~A~~~~~~a~~~~~~~ 451 (514)
...|++..+.++...|..
T Consensus 302 l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 302 LKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHhccCCcc
Confidence 999999999999999875
No 210
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.52 E-value=0.00069 Score=60.73 Aligned_cols=148 Identities=12% Similarity=0.126 Sum_probs=91.1
Q ss_pred HHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHH-HHHHHHHhcCC
Q 010276 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKY-KIASCHFALGE 123 (514)
Q Consensus 45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~la~~~~~~g~ 123 (514)
.+...|-++-+++++.+|.+.|.++.+...+.+.... .++.. ++-.++ -+++
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lk--------------------------eEvl~grilnAf-fl~n 60 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLK--------------------------EEVLGGRILNAF-FLNN 60 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHH--------------------------HHHHhhHHHHHH-HHhh
Confidence 4456788899999999999999999877543332211 12222 122222 2333
Q ss_pred HHHHHHHHhcCC-CCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcC
Q 010276 124 TKAAIVEMEGIP-SKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRS 202 (514)
Q Consensus 124 ~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 202 (514)
.+.-...+..+. ..|..+......|...++.|.+.+|++.+......-......|... ++.
T Consensus 61 ld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~-ni~----------------- 122 (549)
T PF07079_consen 61 LDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDT-NIQ----------------- 122 (549)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhh-hHH-----------------
Confidence 333332222221 2356777778889999999999999999887765533333333221 000
Q ss_pred CCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 010276 203 GRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR 244 (514)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 244 (514)
.--+++..-...|.++...|++.++..++++++..
T Consensus 123 -------~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 123 -------QLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred -------HHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 00122233346689999999999999999998863
No 211
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.51 E-value=5.1e-07 Score=81.19 Aligned_cols=70 Identities=24% Similarity=0.185 Sum_probs=66.4
Q ss_pred hCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHH---HHHHHHHHHHcCChhHHHHHHHHHHhhC
Q 010276 412 AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA---ALALAELHVIEGRNGDAVSLLERYLKDW 482 (514)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (514)
.+|+++..++++|.+|... |++++|+..|+++++++|++.++ |+++|.+|..+|++++|+..++++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~l-GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSK-GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5788999999999999998 99999999999999999999865 9999999999999999999999999974
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.51 E-value=1.5e-07 Score=64.96 Aligned_cols=62 Identities=27% Similarity=0.263 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHhhC---CCc-----hHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 452 LGAALALAELHVIEGRNGDAVSLLERYLKDW---ADD-----SLHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
..++.++|.++..+|++++|+.+|++++++. +++ .++.++|.++..+|++++|+++|+++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4566667777777777777777777776542 111 3666777777777777777777777765
No 213
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.51 E-value=0.00086 Score=61.48 Aligned_cols=407 Identities=13% Similarity=0.101 Sum_probs=245.1
Q ss_pred hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHH
Q 010276 39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCH 118 (514)
Q Consensus 39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 118 (514)
.+.+..+|+.+-+.+-.+ -+++..+.|++.+...|..+.+|... ....
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~y-------------------------------i~~E 63 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLY-------------------------------IERE 63 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHH-------------------------------HHHH
Confidence 345677899998887777 99999999999999988766655443 3444
Q ss_pred HhcCCHHHHHHHHhcCCCCCccHHHHHHH-HHHHHhcCChhhHH----HHHHHHH---hcCCCCHHHHHHHHHhccCcc-
Q 010276 119 FALGETKAAIVEMEGIPSKARNLQMSLLM-AKLYRNSRHNRGAV----ACYKECL---RHCPFFIEAITALAELGATPK- 189 (514)
Q Consensus 119 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~----~~~~~~l---~~~p~~~~~~~~l~~~~~~~~- 189 (514)
++.++|+....+|.+.....-+.+.|... ..+-...|+...+. +.|+-++ ..++.+..+|...........
T Consensus 64 l~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea 143 (656)
T KOG1914|consen 64 LASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEA 143 (656)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccc
Confidence 56677777777777654444456666433 33333344433322 2333333 345666667766554432211
Q ss_pred --cH---------hHHHhccCCcCCCCCCCcCCchhHHhH------H--HHHH--HHHHhcCHHHHHHHHHHHHHh----
Q 010276 190 --DI---------ISLFAQTPNRSGRAPFDHLDSSRWLHR------Y--VEAQ--CCIASNDYKGGLELFAELLQR---- 244 (514)
Q Consensus 190 --~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~a~--~~~~~~~~~~A~~~~~~~~~~---- 244 (514)
.+ ...+.++... |. +.-..-|..+ . ..|. +.-....|-.|...+++....
T Consensus 144 ~gk~ee~QRI~~vRriYqral~t----Pm-~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL 218 (656)
T KOG1914|consen 144 VGKYEENQRITAVRRIYQRALVT----PM-HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGL 218 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHhcC----cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhh
Confidence 11 1112222211 10 0001111111 0 1111 122334566777777766541
Q ss_pred ---CCC----c-------HHHHHHHHHHHHHhC------C--hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC----
Q 010276 245 ---FPN----N-------IHILLEMAKVDAIIG------K--NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD---- 298 (514)
Q Consensus 245 ---~p~----~-------~~~~~~la~~~~~~~------~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 298 (514)
+|. . .+.|..+...-...+ . ...-.-.+++++..-+..++.|+..+..+...++
T Consensus 219 ~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~ 298 (656)
T KOG1914|consen 219 NRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTE 298 (656)
T ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH
Confidence 111 1 122322222111111 0 1123334667777777778888777776666665
Q ss_pred ----------hhHHHHHHHHHhhcCC-CChHHHHHHHHHHhh----cChhHHHHHHHHHHHhcccCch-hHHHHHHHHHh
Q 010276 299 ----------YSKLSKLVHDLLSIDP-SRPEVFVALSVLWER----KDERGALSYAEKSIRIDERHIP-GYIMKGNLLLS 362 (514)
Q Consensus 299 ----------~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 362 (514)
.+++..++++++.... .+...++.++..-.. .+++.....+++++.+...++. ++..+-+.-.+
T Consensus 299 ~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR 378 (656)
T KOG1914|consen 299 KGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRR 378 (656)
T ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHH
Confidence 5778888888776432 233344444443332 2355667777777776544433 45556666666
Q ss_pred cCChHHHHHHHHHhHhhcCCh-HHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHH
Q 010276 363 MKRPEAAVIAFRGAQELRPDL-RSYQGLV-HSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKF 440 (514)
Q Consensus 363 ~~~~~~A~~~~~~~~~~~~~~-~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~ 440 (514)
..-...|...|.++-+..-.. .++..-| .-|..+++..-|..+|+-.++..++++..-......+... ++-..+...
T Consensus 379 ~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~l-Ndd~N~R~L 457 (656)
T KOG1914|consen 379 AEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHL-NDDNNARAL 457 (656)
T ss_pred hhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHh-CcchhHHHH
Confidence 677888888998886653332 3443333 2345689999999999999999999999999999999998 999999999
Q ss_pred HHHHHhh--CCC-ChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCC
Q 010276 441 YESALRL--EPG-YLGAALALAELHVIEGRNGDAVSLLERYLKDWA 483 (514)
Q Consensus 441 ~~~a~~~--~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 483 (514)
|++++.. .|+ ..++|..+-.....-|+....+++-++-....|
T Consensus 458 FEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 458 FERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 9999986 333 246888888888899999999988888777666
No 214
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.0018 Score=64.00 Aligned_cols=255 Identities=15% Similarity=0.124 Sum_probs=138.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhH
Q 010276 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (514)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (514)
|...++.|...+|++.|-++ ++|..+.....+..+.|.|++-+.++..+-+... .+..-..+...|.+.++..+
T Consensus 1111 akAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1111 AKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAYAKTNRLTE 1184 (1666)
T ss_pred HHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHHHHhchHHH
Confidence 56666666666666666544 4455566666666666677666666665544321 12222334445555555544
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcC
Q 010276 302 LSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP 381 (514)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 381 (514)
-.+.. ..|+.......--.++..+.|+.|.-+|.. ...|..++..+...|+|+.|...-+++-
T Consensus 1185 lE~fi-----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAn---- 1247 (1666)
T KOG0985|consen 1185 LEEFI-----AGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKAN---- 1247 (1666)
T ss_pred HHHHh-----cCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhcc----
Confidence 43332 234444443333335555666666555543 3446667777788888888887777662
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 010276 382 DLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAEL 461 (514)
Q Consensus 382 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 461 (514)
+...|...+.++...+.+.-|.-+=-.. --+++-+-.+...|... |-+++-+..++.++.+...+...+..||.+
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlAQiCGL~i----ivhadeLeeli~~Yq~r-GyFeElIsl~Ea~LGLERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLAQICGLNI----IVHADELEELIEYYQDR-GYFEELISLLEAGLGLERAHMGMFTELAIL 1322 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHHHhcCceE----EEehHhHHHHHHHHHhc-CcHHHHHHHHHhhhchhHHHHHHHHHHHHH
Confidence 2245555555555555444332211000 01233444555566666 777777777777777766666666666666
Q ss_pred HHHcCChhHHHHHHHHHHhhC--C-------CchHHHHHHHHHHHhccHHHHH
Q 010276 462 HVIEGRNGDAVSLLERYLKDW--A-------DDSLHVKLAQVFAATNMLQEAL 505 (514)
Q Consensus 462 ~~~~g~~~~A~~~~~~~~~~~--~-------~~~~~~~l~~~~~~~g~~~~A~ 505 (514)
|.+- ++++-.+.++-....- | ....|..+..+|.+-..++.|.
T Consensus 1323 Ysky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1323 YSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 6543 3444444444333321 1 1135666666666666665554
No 215
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.47 E-value=2.7e-06 Score=66.08 Aligned_cols=64 Identities=22% Similarity=0.204 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 010276 366 PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSK----------VKEALYAAREAMKAMPQSAKALKLVGDVHAS 429 (514)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 429 (514)
|+.|.+.++.....+|.+ +.+++-|.++..+.+ +++|+.-|++++.++|+..++++++|.++..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 344445555555555554 444444444443321 2333444444444444444444444444443
No 216
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.46 E-value=0.0021 Score=63.81 Aligned_cols=416 Identities=14% Similarity=0.033 Sum_probs=223.0
Q ss_pred CCCCChhhhHHHHHHHHhhHh-hhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHH
Q 010276 34 NGETSPHLKAENLIILGDSLF-RDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKY 112 (514)
Q Consensus 34 ~~~~~~~~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 112 (514)
....+|...+.+.+.+|.+++ ...+++.|..++++++.+... ++.... .....+
T Consensus 50 ~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~------------------------k~~~~~ 104 (608)
T PF10345_consen 50 QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDL------------------------KFRCQF 104 (608)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHH------------------------HHHHHH
Confidence 455678899999999999999 568999999999999888643 211111 122344
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCC----CccHHHH---HHHHHHHHhcCChhhHHHHHHHHHhcC--CCCHHHHHHHHH
Q 010276 113 KIASCHFALGETKAAIVEMEGIPSK----ARNLQMS---LLMAKLYRNSRHNRGAVACYKECLRHC--PFFIEAITALAE 183 (514)
Q Consensus 113 ~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~ 183 (514)
.+++++.+.+... |...+++.... +.....+ +.....+...+++..|+..++.+.... +.++.+....
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~-- 181 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA-- 181 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH--
Confidence 5678887777766 88887773211 2222222 222444444589999999999988665 3444444322
Q ss_pred hccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHh------C----CCcHHHHH
Q 010276 184 LGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR------F----PNNIHILL 253 (514)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~----p~~~~~~~ 253 (514)
.+..+.+....+..+++++..+++... + +....++.
T Consensus 182 ----------------------------------~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~ 227 (608)
T PF10345_consen 182 ----------------------------------SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALF 227 (608)
T ss_pred ----------------------------------HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHH
Confidence 122244444444444555554444221 0 11122222
Q ss_pred HHHH--HHHHhCChHHHHHHHHHHH---h---hCC--------------------------CC----------HHHHHHH
Q 010276 254 EMAK--VDAIIGKNDEAILNFEKVR---S---IDP--------------------------YI----------MTYMDEY 289 (514)
Q Consensus 254 ~la~--~~~~~~~~~~A~~~~~~~~---~---~~~--------------------------~~----------~~~~~~l 289 (514)
.+-. ++...|+++.+...++..- + ..| .. .-++..-
T Consensus 228 lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS 307 (608)
T PF10345_consen 228 LLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLS 307 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHH
Confidence 2222 2333444444433333221 1 010 00 0112222
Q ss_pred HHHHHHhCChhHHHHHHHHHhhcC-------CCC---h-------HHH---------HHHHHHHhh-cChhHHHHHHHHH
Q 010276 290 AMLLKVKCDYSKLSKLVHDLLSID-------PSR---P-------EVF---------VALSVLWER-KDERGALSYAEKS 342 (514)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~~~~~~-------~~~---~-------~~~---------~~l~~~~~~-~~~~~A~~~~~~~ 342 (514)
|......|..++|.+++.++++.- +.. + ..| ...+..... +++..+......+
T Consensus 308 ~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~ 387 (608)
T PF10345_consen 308 GLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFM 387 (608)
T ss_pred HHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 344444555556666655554321 111 0 111 111111111 8888888888877
Q ss_pred HHhc---cc------CchhHHHHHHHHHhcCChHHHHHHHH--------HhHhhcCChH----HHHHHHHHHHhcCCHHH
Q 010276 343 IRID---ER------HIPGYIMKGNLLLSMKRPEAAVIAFR--------GAQELRPDLR----SYQGLVHSYLQFSKVKE 401 (514)
Q Consensus 343 ~~~~---~~------~~~~~~~~~~~~~~~~~~~~A~~~~~--------~~~~~~~~~~----~~~~l~~~~~~~~~~~~ 401 (514)
.... |. .+..++..|..+...|+.+.|...|. .+....+..+ +..++..++...+....
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 388 RQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDD 467 (608)
T ss_pred HHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccch
Confidence 6543 22 35678889999999999999999998 4444444443 24556666665554333
Q ss_pred ----HHHHHHHHHhhCCCCHH-----HHHHHHHHHHhc-CCChHHHHHHHHHHHhhC-C--CC----hHHHHHHHHHHHH
Q 010276 402 ----ALYAAREAMKAMPQSAK-----ALKLVGDVHASN-ASGREKAKKFYESALRLE-P--GY----LGAALALAELHVI 464 (514)
Q Consensus 402 ----A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~-~~~~~~A~~~~~~a~~~~-~--~~----~~~~~~la~~~~~ 464 (514)
....+++.-....+.+. .+..+-.++... .-...++...+..+++.. . ++ .-++.-++..++
T Consensus 468 ~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf- 546 (608)
T PF10345_consen 468 SESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF- 546 (608)
T ss_pred hhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-
Confidence 33444333222111111 122221112111 123357777777777654 1 11 124445666666
Q ss_pred cCChhHHHHHHHHHHhhCC---Cc--hHHH-----HHHHHHHHhccHHHHHHHHHHHh
Q 010276 465 EGRNGDAVSLLERYLKDWA---DD--SLHV-----KLAQVFAATNMLQEALSHYEAAL 512 (514)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~---~~--~~~~-----~l~~~~~~~g~~~~A~~~~~~al 512 (514)
.|+..+.......+..... +. ..|. .+...+...|+.++|.....+.-
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 7888887777777666543 22 2442 34566888899999998877653
No 217
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.46 E-value=0.0014 Score=61.26 Aligned_cols=338 Identities=13% Similarity=0.011 Sum_probs=189.0
Q ss_pred CCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhH
Q 010276 136 SKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRW 215 (514)
Q Consensus 136 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (514)
.-|.....|...|..-.+.|..+.+.++|++++..-|.+...|..+.
T Consensus 74 kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~--------------------------------- 120 (577)
T KOG1258|consen 74 KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYL--------------------------------- 120 (577)
T ss_pred hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH---------------------------------
Confidence 34666666777777777777777777777777777776666665441
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 010276 216 LHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAML 292 (514)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 292 (514)
+.+--..|+...-...|+++......+ ...|-.....-..++++..-...|++.++..-.....++..-.-
T Consensus 121 ------~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~ 194 (577)
T KOG1258|consen 121 ------AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQ 194 (577)
T ss_pred ------HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHH
Confidence 222235567777777777776644332 34555555555666777777777777776533322222221111
Q ss_pred HHH------hCChhHHHHHHHHHhhc--CCCC--h-HH------------------HHHHHHHHhh--------cChhHH
Q 010276 293 LKV------KCDYSKLSKLVHDLLSI--DPSR--P-EV------------------FVALSVLWER--------KDERGA 335 (514)
Q Consensus 293 ~~~------~~~~~~A~~~~~~~~~~--~~~~--~-~~------------------~~~l~~~~~~--------~~~~~A 335 (514)
+.. .-..+++.+.-...... .+.. + +. ...+...... ....+.
T Consensus 195 ~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~k 274 (577)
T KOG1258|consen 195 LLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEK 274 (577)
T ss_pred HHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 111 22334444333333321 0000 0 00 0000000000 011111
Q ss_pred HHHHHHHHHh-----cc---cCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHH
Q 010276 336 LSYAEKSIRI-----DE---RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAA 406 (514)
Q Consensus 336 ~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~ 406 (514)
+-.++..+.. .| .+...|..........|+++...-.|++++--.... ..|...+......|+.+-|...+
T Consensus 275 r~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~ 354 (577)
T KOG1258|consen 275 RWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVL 354 (577)
T ss_pred HHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence 2222222211 11 112335555666677788888888888877666555 67777777777778888887777
Q ss_pred HHHHhhC-CCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHH---HHHHHHhhC
Q 010276 407 REAMKAM-PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVS---LLERYLKDW 482 (514)
Q Consensus 407 ~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~~~~~~ 482 (514)
.++.+.. |..+.+...-+.+-... |++..|...+++..+--|+...+-...+....+.|+.+.+.. ++.....-.
T Consensus 355 ~~~~~i~~k~~~~i~L~~a~f~e~~-~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~ 433 (577)
T KOG1258|consen 355 ARACKIHVKKTPIIHLLEARFEESN-GNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK 433 (577)
T ss_pred HhhhhhcCCCCcHHHHHHHHHHHhh-ccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc
Confidence 7777654 55566666666666666 888888888888887778877777777777777788777773 333222222
Q ss_pred CCc----hHHHHHHHHH-HHhccHHHHHHHHHHHhc
Q 010276 483 ADD----SLHVKLAQVF-AATNMLQEALSHYEAALR 513 (514)
Q Consensus 483 ~~~----~~~~~l~~~~-~~~g~~~~A~~~~~~al~ 513 (514)
.+. ..+...+... .-.++.+.|...+.++++
T Consensus 434 ~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~ 469 (577)
T KOG1258|consen 434 ENNGILEKLYVKFARLRYKIREDADLARIILLEAND 469 (577)
T ss_pred cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 122 2333344332 334677777777776654
No 218
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.0002 Score=58.05 Aligned_cols=191 Identities=17% Similarity=0.218 Sum_probs=118.0
Q ss_pred hhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhc
Q 010276 54 FRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEG 133 (514)
Q Consensus 54 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 133 (514)
...+.|++|.++|.++-.... ++.... ....+....|.++.+.|.-.+|
T Consensus 25 gg~~k~eeAadl~~~Aan~yk--------laK~w~-----------------~AG~aflkaA~~h~k~~skhDa------ 73 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAANMYK--------LAKNWS-----------------AAGDAFLKAADLHLKAGSKHDA------ 73 (288)
T ss_pred CCCcchHHHHHHHHHHHHHHH--------HHHhHH-----------------HHHHHHHHHHHHHHhcCCchhH------
Confidence 344689999999999866521 000000 1233444555555554443333
Q ss_pred CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCch
Q 010276 134 IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSS 213 (514)
Q Consensus 134 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (514)
...+...+.+|. .+++.+|+.++++++++..+-......- .
T Consensus 74 -------at~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aA-k------------------------------ 114 (288)
T KOG1586|consen 74 -------ATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAA-K------------------------------ 114 (288)
T ss_pred -------HHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHH-h------------------------------
Confidence 334455555654 4589999999999887654322211100 0
Q ss_pred hHHhHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH---
Q 010276 214 RWLHRYVEAQCCIAS-NDYKGGLELFAELLQRFPNN------IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM--- 283 (514)
Q Consensus 214 ~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--- 283 (514)
.....|.+|-.. .++++|+..|+++-+..... ...+...+..-...++|.+|+..|+++....-++.
T Consensus 115 ---~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLK 191 (288)
T KOG1586|consen 115 ---HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLK 191 (288)
T ss_pred ---hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 012236666554 78888999998887644322 34666777778888999999999999887655543
Q ss_pred ----HHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCCh
Q 010276 284 ----TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP 317 (514)
Q Consensus 284 ----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 317 (514)
..++.-|.++....+.-.+...+++..+.+|...
T Consensus 192 ys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 192 YSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred hHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 3345556677777777777777777778888654
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.43 E-value=3.5e-07 Score=63.20 Aligned_cols=65 Identities=20% Similarity=0.189 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh----CCCC---hHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276 416 SAKALKLVGDVHASNASGREKAKKFYESALRL----EPGY---LGAALALAELHVIEGRNGDAVSLLERYLKD 481 (514)
Q Consensus 416 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~----~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (514)
-..++.++|.++... |++++|+.+|++++++ .+++ ..++.++|.++...|++++|++++++++++
T Consensus 4 ~a~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYREL-GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345566666666666 6666666666666653 1111 335666777777777777777777777654
No 220
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.43 E-value=0.00013 Score=69.15 Aligned_cols=154 Identities=19% Similarity=0.145 Sum_probs=119.9
Q ss_pred HHHHHhcCChHHHHHHHHHhHhhcCCh-HH--------HHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 010276 357 GNLLLSMKRPEAAVIAFRGAQELRPDL-RS--------YQGLVHSYL----QFSKVKEALYAAREAMKAMPQSAKALKLV 423 (514)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~--------~~~l~~~~~----~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 423 (514)
-.+.--.|+-+.++..+.++.+ .++. .. |+....... .....+.|.+.++......|+.+-.++..
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~ 273 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFE 273 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 3334456899999999999876 3332 11 222222222 24577889999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhhCCCCh----HHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch--HHHHHHHHHHH
Q 010276 424 GDVHASNASGREKAKKFYESALRLEPGYL----GAALALAELHVIEGRNGDAVSLLERYLKDWADDS--LHVKLAQVFAA 497 (514)
Q Consensus 424 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~l~~~~~~ 497 (514)
|+++... |+.++|++.|++++......+ -.++.+++++..+++|++|...+.+..+...-+. ..+..|.|+..
T Consensus 274 gR~~~~~-g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 274 GRLERLK-GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM 352 (468)
T ss_pred HHHHHHh-cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 9999998 999999999999886443332 3678899999999999999999999998776554 55566899999
Q ss_pred hccH-------HHHHHHHHHHh
Q 010276 498 TNML-------QEALSHYEAAL 512 (514)
Q Consensus 498 ~g~~-------~~A~~~~~~al 512 (514)
.|+. ++|.+.|+++-
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHH
Confidence 9999 88888888764
No 221
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=1.3e-05 Score=68.35 Aligned_cols=155 Identities=13% Similarity=0.030 Sum_probs=107.4
Q ss_pred HHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh-cCChHH----HHHHHHHHHhcCC
Q 010276 324 SVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDLRS----YQGLVHSYLQFSK 398 (514)
Q Consensus 324 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~----~~~l~~~~~~~~~ 398 (514)
+.+..+|++.+|....++.++..|.+.-++..--.+++..|+...-...+++++.. +|+.+. .-.++..+...|-
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred HHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 33444477778888888888888888777777777778888888888888777766 555432 2344666677788
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHcCChhHHHHH
Q 010276 399 VKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY----LGAALALAELHVIEGRNGDAVSL 474 (514)
Q Consensus 399 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~ 474 (514)
+++|.+..+++++++|.+..+....+.++... |++.++.++..+.-..-... ..-|...+.++...+.|+.|+++
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~-~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMN-GRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhc-chhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 88888888888888888888878888887776 88888877776643221110 12344566667777788888887
Q ss_pred HHHHH
Q 010276 475 LERYL 479 (514)
Q Consensus 475 ~~~~~ 479 (514)
|.+-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 77643
No 222
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.003 Score=62.50 Aligned_cols=286 Identities=13% Similarity=0.111 Sum_probs=182.5
Q ss_pred HHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHH
Q 010276 49 LGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAI 128 (514)
Q Consensus 49 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 128 (514)
.|.+....+-|++|...|++-- .+..-...+. ...+..+.|.+ -....+.+.++.++|...+..|...+|+
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~-~n~~A~~VLi------e~i~~ldRA~e--fAe~~n~p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD-MNVSAIQVLI------ENIGSLDRAYE--FAERCNEPAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc-ccHHHHHHHH------HHhhhHHHHHH--HHHhhCChHHHHHHHHHHHhcCchHHHH
Confidence 4667777888888888887621 1000000000 00001111100 0123467899999999999999999999
Q ss_pred HHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC--CCC-HHHHHHHHHhccCcccHhHHHhccCCcCCCC
Q 010276 129 VEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHC--PFF-IEAITALAELGATPKDIISLFAQTPNRSGRA 205 (514)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 205 (514)
+.+-+. ++|..+.....+..+.|.|++-++++..+-+.. |.- .+....++... ...+.++.+.
T Consensus 1125 eSyika----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~-rl~elE~fi~--------- 1190 (1666)
T KOG0985|consen 1125 ESYIKA----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTN-RLTELEEFIA--------- 1190 (1666)
T ss_pred HHHHhc----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhc-hHHHHHHHhc---------
Confidence 987654 678888888999999999999999998876543 322 22222232221 1111111110
Q ss_pred CCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCC-----
Q 010276 206 PFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP----- 280 (514)
Q Consensus 206 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----- 280 (514)
..+....-..|.-++..|.|+.|.-+|..+ .-|..++..+..+|+|..|...-+++-....
T Consensus 1191 ------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1191 ------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVC 1256 (1666)
T ss_pred ------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 011111223488889999999998888754 4567888888999999999888877643210
Q ss_pred ------C--------------CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHH
Q 010276 281 ------Y--------------IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAE 340 (514)
Q Consensus 281 ------~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~ 340 (514)
. +.+-+-.+...|...|-+++-+.+++.++.+..-+-..+..+|.+|..-++++-.+.++
T Consensus 1257 faCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~ 1336 (1666)
T KOG0985|consen 1257 FACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLK 1336 (1666)
T ss_pred HHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 0 13445567788888999999999999998888888888888898888866666655555
Q ss_pred HHHHh--------cccCchhHHHHHHHHHhcCChHHHHH
Q 010276 341 KSIRI--------DERHIPGYIMKGNLLLSMKRPEAAVI 371 (514)
Q Consensus 341 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~ 371 (514)
-.... ..+....|..+..+|.+-..|+.|.-
T Consensus 1337 LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1337 LFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 43321 11224456667777777777776643
No 223
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.0001 Score=60.12 Aligned_cols=205 Identities=12% Similarity=0.085 Sum_probs=122.5
Q ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcC
Q 010276 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALG 122 (514)
Q Consensus 43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 122 (514)
+..+..-+..|...++|++|..++.+|++-..++. .++.- .+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--------------------------------slfhA------AK 72 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--------------------------------SLFHA------AK 72 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--------------------------------cHHHH------HH
Confidence 44556666777777889999999988886543222 11111 12
Q ss_pred CHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcC
Q 010276 123 ETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRS 202 (514)
Q Consensus 123 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 202 (514)
-++.|.-+++.+..-+.-.+.+..-...|...|..+-|-..++++-+
T Consensus 73 ayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak--------------------------------- 119 (308)
T KOG1585|consen 73 AYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAK--------------------------------- 119 (308)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH---------------------------------
Confidence 23344444444433333334444444556666666666665555432
Q ss_pred CCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 010276 203 GRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN------IHILLEMAKVDAIIGKNDEAILNFEKVR 276 (514)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~ 276 (514)
.....+.++|+++|++++.....+ .+.+...++++.+...+++|-..+.+-.
T Consensus 120 ----------------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~ 177 (308)
T KOG1585|consen 120 ----------------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEG 177 (308)
T ss_pred ----------------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhh
Confidence 233456667777777766532221 3456667788888888888887776643
Q ss_pred hh------CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhc----CCCChHHHHHHHHHHhhcChhHHHHHHH
Q 010276 277 SI------DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI----DPSRPEVFVALSVLWERKDERGALSYAE 340 (514)
Q Consensus 277 ~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~A~~~~~ 340 (514)
.. .|+....+.....++....++..|..+++...+. .|++..+..+|-..|..|+.++..+.+.
T Consensus 178 ~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 178 VAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKVLS 251 (308)
T ss_pred hHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHHHHc
Confidence 32 2333445555566667777888998888886654 3445566666666777788777666554
No 224
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=9.6e-05 Score=63.23 Aligned_cols=156 Identities=13% Similarity=0.028 Sum_probs=109.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHhC
Q 010276 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI-DPYI---MTYMDEYAMLLKVKC 297 (514)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~ 297 (514)
+......|++.+|....+++++..|.+.-++..--.+++..|+...-...+++++.. +|+. ..+.-.++..+...|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 455566778888888888888888887777766667777778887777778877765 5544 345556677777788
Q ss_pred ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccC----chhHHHHHHHHHhcCChHHHHHH
Q 010276 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERH----IPGYIMKGNLLLSMKRPEAAVIA 372 (514)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~ 372 (514)
-+++|.+..+++++++|.+..+....+.++.. +++.++.++..+.-..-... ...|..-+.++...+.|+.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 88888888888888888887777777777766 77777777766543221110 12244566677777888888888
Q ss_pred HHHhH
Q 010276 373 FRGAQ 377 (514)
Q Consensus 373 ~~~~~ 377 (514)
|.+-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 76543
No 225
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.37 E-value=2.8e-05 Score=68.48 Aligned_cols=137 Identities=12% Similarity=0.116 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh--cChhHHHHHHHHHHHhcccCchhHHHHHHHHHh
Q 010276 285 YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER--KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS 362 (514)
Q Consensus 285 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (514)
+|..+.....+.+..+.|..+|.++....+....+|...|.+... ++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566666777777778888888888876666667777777776444 555568888888888888888888888888888
Q ss_pred cCChHHHHHHHHHhHhhcCChH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 010276 363 MKRPEAAVIAFRGAQELRPDLR----SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALK 421 (514)
Q Consensus 363 ~~~~~~A~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 421 (514)
.|+.+.|..+|++++..-|... .|......-...|+.+....+.+++.+..|++.....
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 8888888888888887766654 6777777778888888888888888888877554443
No 226
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=6.5e-06 Score=66.59 Aligned_cols=91 Identities=22% Similarity=0.268 Sum_probs=66.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCh
Q 010276 356 KGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR 434 (514)
Q Consensus 356 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 434 (514)
-|+.++.-.+|..|+.+|.+++.++|.. ..|.+.+.++++.++++.+....++++++.|+....++.+|...... ..+
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s-~~~ 94 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS-KGY 94 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh-ccc
Confidence 4555666667777777777777777776 45666777777777777777777777777777777777777777776 777
Q ss_pred HHHHHHHHHHHhh
Q 010276 435 EKAKKFYESALRL 447 (514)
Q Consensus 435 ~~A~~~~~~a~~~ 447 (514)
++|+..++++..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 7777777777554
No 227
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.32 E-value=1e-05 Score=62.88 Aligned_cols=67 Identities=12% Similarity=0.073 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCC----------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 010276 231 YKGGLELFAELLQRFPNNIHILLEMAKVDAIIGK----------NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (514)
Q Consensus 231 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (514)
|+.|.+.++.....+|.+++.++..|.++..+.+ +++|+.-|++++.++|+..+++..+|.++...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 5778888888888899999988888888776644 345666667777777777777777777776654
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00034 Score=57.20 Aligned_cols=191 Identities=15% Similarity=0.093 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCChhHHHHHHHHHhhcC-----CCC-
Q 010276 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI------MTYMDEYAMLLKVKCDYSKLSKLVHDLLSID-----PSR- 316 (514)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~- 316 (514)
...+..-+.+|....++++|..++.++.+-..++ ..++-..+.+......+.++..+++++.... |+.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 3445555667777778888888887777543333 2344555666666777777777777776542 111
Q ss_pred hHHHHHHHHHHhhcChhHHHHHHHHHHHhcccC------chhHHHHHHHHHhcCChHHHHHHHHHhHhh------cCCh-
Q 010276 317 PEVFVALSVLWERKDERGALSYAEKSIRIDERH------IPGYIMKGNLLLSMKRPEAAVIAFRGAQEL------RPDL- 383 (514)
Q Consensus 317 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~- 383 (514)
..++-..+.+....++++|+.+|++++.+-..+ .+.+...++++.+..++++|-..+.+-... .|+.
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~ 190 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC 190 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence 122333344555577778888887776653332 233455667777777777777666654332 1222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 010276 384 RSYQGLVHSYLQFSKVKEALYAAREAMKA----MPQSAKALKLVGDVHASNASGREKAKKFY 441 (514)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~~A~~~~ 441 (514)
..+.....+++...+|..|..+++...++ .|++..+.-++-..|.. |+.++....+
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~--gD~E~~~kvl 250 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE--GDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc--CCHHHHHHHH
Confidence 34555556666667777777777776553 24455556666555553 6666555544
No 229
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.32 E-value=9.1e-05 Score=67.21 Aligned_cols=191 Identities=12% Similarity=0.041 Sum_probs=115.1
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChh
Q 010276 254 EMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDER 333 (514)
Q Consensus 254 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 333 (514)
.+..-..+..+...-++.-.++++++|+.+.++..++.- ......++.++++++++.....-..-. .....|..-
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~---~~~~~g~~~ 247 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQ---FLQHHGHFW 247 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhh---hhhcccchh
Confidence 334444556666666666677777777666666655431 122345566666665543211100000 000001100
Q ss_pred HHHHHHHHHHHhcccC--chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh---HHHHHHHHHHHhcCCHHHHHHHHHH
Q 010276 334 GALSYAEKSIRIDERH--IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKVKEALYAARE 408 (514)
Q Consensus 334 ~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (514)
+ .....+.+ ..+...+|.+..+.|+.++|++.++..++..|.. .+..++..++...+.+.++...+.+
T Consensus 248 e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 248 E-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred h-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 0 01001111 3345678999999999999999999999887763 5789999999999999999999988
Q ss_pred HHhh-CCCCHHHHHHHHHHHHhcCCC---------------hHHHHHHHHHHHhhCCCChHHHH
Q 010276 409 AMKA-MPQSAKALKLVGDVHASNASG---------------REKAKKFYESALRLEPGYLGAAL 456 (514)
Q Consensus 409 ~~~~-~p~~~~~~~~l~~~~~~~~~~---------------~~~A~~~~~~a~~~~~~~~~~~~ 456 (514)
.-+. -|.++...+..+..-.+..++ -..|.+.+.+|++.+|..+..+.
T Consensus 321 YdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 321 YDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred hccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 6544 366666666555544332122 13467889999999988765443
No 230
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.31 E-value=1.9e-05 Score=69.59 Aligned_cols=136 Identities=15% Similarity=0.059 Sum_probs=109.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 010276 352 GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQ-FSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS 429 (514)
Q Consensus 352 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 429 (514)
+|..+.....+.+..+.|..+|.++.+..+.. ..|...|.+-.. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 56777777788888999999999998554433 788888888666 5666669999999999999999999999999998
Q ss_pred cCCChHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHH
Q 010276 430 NASGREKAKKFYESALRLEPGYL---GAALALAELHVIEGRNGDAVSLLERYLKDWADDSLH 488 (514)
Q Consensus 430 ~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 488 (514)
. ++.+.|...|++++..-|... .+|........+.|+.+....+.+++.+..|+....
T Consensus 83 ~-~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 83 L-NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp T-T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred h-CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 8 999999999999998766654 588888899999999999999999999998886533
No 231
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.30 E-value=5.3e-05 Score=68.67 Aligned_cols=188 Identities=18% Similarity=0.164 Sum_probs=116.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhc-cCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHH
Q 010276 146 LMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELG-ATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQC 224 (514)
Q Consensus 146 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (514)
.+..-..+..+...-++.-+++++++|+...++..|++-. ....+....++++.+. |..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkA--------------------gE~ 232 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKA--------------------GEA 232 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHH--------------------HHH
Confidence 3444456778889999999999999999999999886532 2222333333222221 111
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhCChh
Q 010276 225 CIASNDYKGGLELFAELLQRFPNN--IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY--IMTYMDEYAMLLKVKCDYS 300 (514)
Q Consensus 225 ~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 300 (514)
.+......+...-+-......+.+ ..+...+|.|..+.|+.++|++.++..++..|. +..++..+..++...+.+.
T Consensus 233 ~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 233 SLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred hhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH
Confidence 111111111111111111111111 345677899999999999999999999987775 4568889999999999999
Q ss_pred HHHHHHHHHhhc-CCCChHHHHHHHHHHhh--cC---------------hhHHHHHHHHHHHhcccCchhH
Q 010276 301 KLSKLVHDLLSI-DPSRPEVFVALSVLWER--KD---------------ERGALSYAEKSIRIDERHIPGY 353 (514)
Q Consensus 301 ~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~--~~---------------~~~A~~~~~~~~~~~~~~~~~~ 353 (514)
++..++.+--+. -|++....+..+.+-.+ ++ -..|++.+.++++.+|..+..+
T Consensus 313 d~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 313 DVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred HHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 999888886443 35566666555554333 22 1245677778888888766543
No 232
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.29 E-value=2e-06 Score=51.27 Aligned_cols=43 Identities=28% Similarity=0.178 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 010276 141 LQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAE 183 (514)
Q Consensus 141 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 183 (514)
|.+++.+|..|...|++++|++.|+++++.+|+++.++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578999999999999999999999999999999999988864
No 233
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.25 E-value=0.0001 Score=58.19 Aligned_cols=106 Identities=15% Similarity=0.127 Sum_probs=87.4
Q ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcC
Q 010276 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALG 122 (514)
Q Consensus 43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 122 (514)
.-+.+.++..+...|++++|+..++.++..-. +.. -..-+..++|++.+..|
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-De~---------------------------lk~l~~lRLArvq~q~~ 140 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTK-DEN---------------------------LKALAALRLARVQLQQK 140 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccch-hHH---------------------------HHHHHHHHHHHHHHHhh
Confidence 34567789999999999999999999986522 110 12346679999999999
Q ss_pred CHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHH
Q 010276 123 ETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIE 176 (514)
Q Consensus 123 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 176 (514)
.+++|+..++.+......+......|.++...|+.++|+..|++++..+++...
T Consensus 141 k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 141 KADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred hHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 999999999998776667777889999999999999999999999999865433
No 234
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.23 E-value=0.0035 Score=56.35 Aligned_cols=143 Identities=13% Similarity=0.058 Sum_probs=84.3
Q ss_pred HHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccH---hHHHhccCCcCCCC
Q 010276 129 VEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDI---ISLFAQTPNRSGRA 205 (514)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~ 205 (514)
.+-+++...|.+...|+.+.+.+..+|.+++-.+.|++...-.|--+.+|.....-....+++ ...+.++...
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k---- 105 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK---- 105 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh----
Confidence 445567788999999999999999999999999999999999998888886553322222222 2233333221
Q ss_pred CCCcCCchhHHhHHHHHHHHHHhcC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---------hCChH
Q 010276 206 PFDHLDSSRWLHRYVEAQCCIASND----------YKGGLELFAELLQRFPNNIHILLEMAKVDAI---------IGKND 266 (514)
Q Consensus 206 ~~~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~---------~~~~~ 266 (514)
....+.|..+. .|.+.-+ .-+|.+..-...-.+|.....|...+..+.. +.+.+
T Consensus 106 ---~l~ldLW~lYl----~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid 178 (660)
T COG5107 106 ---SLNLDLWMLYL----EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRID 178 (660)
T ss_pred ---hccHhHHHHHH----HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHH
Confidence 11233343332 2222211 1222222222223567776777777665442 33455
Q ss_pred HHHHHHHHHHhhCCCC
Q 010276 267 EAILNFEKVRSIDPYI 282 (514)
Q Consensus 267 ~A~~~~~~~~~~~~~~ 282 (514)
.-...|.+++...-.+
T Consensus 179 ~iR~~Y~ral~tP~~n 194 (660)
T COG5107 179 KIRNGYMRALQTPMGN 194 (660)
T ss_pred HHHHHHHHHHcCcccc
Confidence 6667788888754444
No 235
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.22 E-value=0.00013 Score=67.11 Aligned_cols=109 Identities=14% Similarity=0.073 Sum_probs=59.2
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHH--HHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHh
Q 010276 140 NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIE--AITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLH 217 (514)
Q Consensus 140 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (514)
+...+..-+..+..+|+..+|..++..++-..|.... +...++.+....|-..++---+.......+.. ...
T Consensus 212 sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~------t~n 285 (886)
T KOG4507|consen 212 SWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFF------TSN 285 (886)
T ss_pred hHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccc------ccc
Confidence 3333334444455689999999999999987775433 33344444433333222211111111111110 011
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 010276 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLE 254 (514)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 254 (514)
.+..+.++...+++......|..+.+..|......-.
T Consensus 286 ~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q 322 (886)
T KOG4507|consen 286 YYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQ 322 (886)
T ss_pred ceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHH
Confidence 3455777777777777777777777777765444433
No 236
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.21 E-value=3.7e-06 Score=50.04 Aligned_cols=41 Identities=22% Similarity=0.211 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 010276 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (514)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (514)
.++..+|.+|...|++++|++.|+++++.+|+++.++..+|
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 34555555555555555555555555555555555555554
No 237
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.20 E-value=1.6e-06 Score=47.86 Aligned_cols=32 Identities=31% Similarity=0.451 Sum_probs=22.6
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCChhHHH
Q 010276 441 YESALRLEPGYLGAALALAELHVIEGRNGDAV 472 (514)
Q Consensus 441 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 472 (514)
|+++++++|+++.+|+++|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56677777777777777777777777777664
No 238
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.19 E-value=0.0019 Score=58.03 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHH---hCChhHHHHHHHH-HhhcCCCChHHH
Q 010276 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSI----DPYIMTYMDEYAMLLKV---KCDYSKLSKLVHD-LLSIDPSRPEVF 320 (514)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~-~~~~~~~~~~~~ 320 (514)
+++...+-.+|....+|+.-++..+..-.. -++.+.+...+|.++.+ .|+.++|+.++.. +....+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 566677777899999999999998887766 45567778888988888 8999999999988 556677889999
Q ss_pred HHHHHHHhh----------cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCC
Q 010276 321 VALSVLWER----------KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR 365 (514)
Q Consensus 321 ~~l~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (514)
..+|.+|.. ...++|+..|.++.+.+|+ ...-.+++.++...|.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCC
Confidence 999988865 1234666666666666643 2223344444444443
No 239
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=8.4e-06 Score=65.97 Aligned_cols=94 Identities=11% Similarity=0.151 Sum_probs=87.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 010276 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (514)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (514)
-..|..++....|+.|+..|.+++..+|..+..+.+.+.++++..+++.+.....++++++|+.....+.+|........
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 34477888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhc
Q 010276 299 YSKLSKLVHDLLSI 312 (514)
Q Consensus 299 ~~~A~~~~~~~~~~ 312 (514)
+++|+..+.++..+
T Consensus 94 ~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSL 107 (284)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999999654
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=0.00051 Score=58.26 Aligned_cols=147 Identities=22% Similarity=0.225 Sum_probs=93.4
Q ss_pred HHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCH
Q 010276 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET 124 (514)
Q Consensus 45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 124 (514)
.-+..+......|++.+|...|..++...| ...++...++.|+...|+.
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~-------------------------------~~~~~~~~la~~~l~~g~~ 184 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAP-------------------------------ENSEAKLLLAECLLAAGDV 184 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCc-------------------------------ccchHHHHHHHHHHHcCCh
Confidence 445667788899999999999999999977 4467788899999999999
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHH--HHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcC
Q 010276 125 KAAIVEMEGIPSKARNLQMSLLMA--KLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRS 202 (514)
Q Consensus 125 ~~A~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 202 (514)
+.|..++..++....+....-..+ ..+.+.....+. ..+++.+..+|++..+...+
T Consensus 185 e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~l--------------------- 242 (304)
T COG3118 185 EAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALAL--------------------- 242 (304)
T ss_pred HHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHH---------------------
Confidence 999999999876644333333222 233333322222 23444555666666665554
Q ss_pred CCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhC
Q 010276 203 GRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPN--NIHILLEMAKVDAIIG 263 (514)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~ 263 (514)
|..+...|+.+.|.+.+-.+++.+.. +..+...+-.++...|
T Consensus 243 -------------------A~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 243 -------------------ADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred -------------------HHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 55666666666666666666654332 2334444444444444
No 241
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.11 E-value=0.0086 Score=56.16 Aligned_cols=80 Identities=13% Similarity=0.056 Sum_probs=55.1
Q ss_pred CChhHHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCccHHHHHHH-HHHHHhcCChhhHHHHHHHHHhcCCC---CHHHHH
Q 010276 105 INENEVKYKIASCHFALGETKAAIVEMEG-IPSKARNLQMSLLM-AKLYRNSRHNRGAVACYKECLRHCPF---FIEAIT 179 (514)
Q Consensus 105 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~ 179 (514)
|.-...+-..|..-.+.|..+.+..++++ +..-|.+.+.|... +.+-...|+...-...|+++...... +...|.
T Consensus 76 Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWd 155 (577)
T KOG1258|consen 76 PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWD 155 (577)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHH
Confidence 33344555778888899999999999999 55558888887544 44444677888888888888876543 334444
Q ss_pred HHHHh
Q 010276 180 ALAEL 184 (514)
Q Consensus 180 ~l~~~ 184 (514)
.....
T Consensus 156 kyie~ 160 (577)
T KOG1258|consen 156 KYIEF 160 (577)
T ss_pred HHHHH
Confidence 44333
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.11 E-value=0.0034 Score=59.75 Aligned_cols=172 Identities=16% Similarity=0.057 Sum_probs=119.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC-hHHHH-HHH----HHHh------hcChhHHHHHH
Q 010276 272 FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR-PEVFV-ALS----VLWE------RKDERGALSYA 339 (514)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~-~l~----~~~~------~~~~~~A~~~~ 339 (514)
|.-++.+-|. ....+..+.--.|+-+.+++.+.++.+...-. +-+-. .++ .... ..+.+.|.+.+
T Consensus 180 f~L~lSlLPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL 256 (468)
T PF10300_consen 180 FNLVLSLLPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELL 256 (468)
T ss_pred HHHHHHhCCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHH
Confidence 4444444442 22333444445688899999998887632211 21111 111 1111 13456899999
Q ss_pred HHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 010276 340 EKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMP 414 (514)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 414 (514)
.......|+.+-..+..|.++...|+.++|++.|++++....+. -.++.++.++.-+.+|++|..++.+..+.+.
T Consensus 257 ~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 257 EEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 99999999998889999999999999999999999887543332 3578899999999999999999999998665
Q ss_pred CCHH-HHHHHHHHHHhcCCCh-------HHHHHHHHHHHhh
Q 010276 415 QSAK-ALKLVGDVHASNASGR-------EKAKKFYESALRL 447 (514)
Q Consensus 415 ~~~~-~~~~l~~~~~~~~~~~-------~~A~~~~~~a~~~ 447 (514)
-+.. ..+..|.++... ++. ++|...|.++-..
T Consensus 337 WSka~Y~Y~~a~c~~~l-~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLML-GREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred cHHHHHHHHHHHHHHhh-ccchhhhhhHHHHHHHHHHHHHH
Confidence 5433 345667777776 888 8888888877554
No 243
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.07 E-value=6e-06 Score=46.04 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=30.0
Q ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhccc
Q 010276 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKI 75 (514)
Q Consensus 43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 75 (514)
+.+|+.+|.+++..|++++|+..|+++++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 468999999999999999999999999999985
No 244
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.07 E-value=8.7e-06 Score=45.43 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=30.5
Q ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccC
Q 010276 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIV 76 (514)
Q Consensus 43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 76 (514)
++.++.+|.+++..|+|++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4688999999999999999999999999999864
No 245
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.06 E-value=0.011 Score=57.69 Aligned_cols=247 Identities=14% Similarity=0.066 Sum_probs=170.9
Q ss_pred hcCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHhC-----ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 010276 228 SNDYKGGLELFAELLQR-----FPNNIHILLEMAKVDAIIG-----KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (514)
Q Consensus 228 ~~~~~~A~~~~~~~~~~-----~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (514)
..|.+.|+.+++.+... .-..+.+.+.+|.+|.... +...|..++.++.+.. ++.+.+.+|.++....
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGT 339 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCC
Confidence 36788888888887661 1124567788999998853 6788999999988764 5667888888887766
Q ss_pred ---ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-----cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhc-CChHH
Q 010276 298 ---DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-----KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM-KRPEA 368 (514)
Q Consensus 298 ---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 368 (514)
+...|.++|..+.. ..+..+.+.++.++.. .+...|..++.++.+.+ .+.+...++..+..- +++..
T Consensus 340 ~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~ 415 (552)
T KOG1550|consen 340 KERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDT 415 (552)
T ss_pred ccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccH
Confidence 56789999988876 4678889999999888 46779999999998887 355555555554332 77777
Q ss_pred HHHHHHHhHhhcCCh----HHHHHH-HHHHHhc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc---CCChHH
Q 010276 369 AVIAFRGAQELRPDL----RSYQGL-VHSYLQF----SKVKEALYAAREAMKAMPQSAKALKLVGDVHASN---ASGREK 436 (514)
Q Consensus 369 A~~~~~~~~~~~~~~----~~~~~l-~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---~~~~~~ 436 (514)
+...+....+..-+. .++... ....... .+...+...+.++.. +.++.+...+|.+|..- ..+++.
T Consensus 416 ~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~ 493 (552)
T KOG1550|consen 416 ALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEK 493 (552)
T ss_pred HHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHH
Confidence 777666655543222 111111 1111111 245556666666543 45678888888888753 246789
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHc---CChhHHHHHHHHHHhhCCCc
Q 010276 437 AKKFYESALRLEPGYLGAALALAELHVIE---GRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 437 A~~~~~~a~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~ 485 (514)
|...|.++.... ....+++|.++..- .....|..++.++.+.....
T Consensus 494 a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 494 AAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRA 542 (552)
T ss_pred HHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchh
Confidence 999999888776 78889999888642 12678888888887766544
No 246
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.0037 Score=51.97 Aligned_cols=167 Identities=13% Similarity=0.133 Sum_probs=106.2
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC-ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChh-HHHHHH
Q 010276 263 GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC-DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDER-GALSYA 339 (514)
Q Consensus 263 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-~A~~~~ 339 (514)
.....|+..-..++.++|.+..+|...-.++..++ +..+-++.+.++++.+|.+-.+|...-.+... |++. .-+++.
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~ 136 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFT 136 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHH
Confidence 44567777777777777777777666655555443 45566677777777777777777766655555 6665 666777
Q ss_pred HHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHh-cC-----CHHHHHHHHHHHHhh
Q 010276 340 EKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQ-FS-----KVKEALYAAREAMKA 412 (514)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~-~~-----~~~~A~~~~~~~~~~ 412 (514)
..++..+.++-.+|..+-.+....+.++.-+.+..+.++.+--+ .+|...-.+... .| ..+.-+.+..+.+..
T Consensus 137 ~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~ 216 (318)
T KOG0530|consen 137 KLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILL 216 (318)
T ss_pred HHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777665444 455443222222 11 223344555666667
Q ss_pred CCCCHHHHHHHHHHHHh
Q 010276 413 MPQSAKALKLVGDVHAS 429 (514)
Q Consensus 413 ~p~~~~~~~~l~~~~~~ 429 (514)
.|++..+|..+..++..
T Consensus 217 vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 217 VPNNESAWNYLKGLLEL 233 (318)
T ss_pred CCCCccHHHHHHHHHHh
Confidence 77777777777666664
No 247
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=0.026 Score=61.55 Aligned_cols=386 Identities=13% Similarity=0.034 Sum_probs=210.3
Q ss_pred HHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHH-HHHHHHHHhcCCHHH
Q 010276 48 ILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVK-YKIASCHFALGETKA 126 (514)
Q Consensus 48 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~ 126 (514)
.+|.+-++.|.|.+|+.++++- ...+... +-.+.. +.+-.+|...++++.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~----------------------------~~~e~l~fllq~lY~~i~dpDg 1438 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEK----------------------------ETEEALYFLLQNLYGSIHDPDG 1438 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchh----------------------------HHHHHHHHHHHHHHHhcCCcch
Confidence 6888999999999999999985 1111100 112233 334448888999887
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCC
Q 010276 127 AIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAP 206 (514)
Q Consensus 127 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (514)
-..........| .....-......|++..|..+|+++++.+|+......+........+.....+..........+
T Consensus 1439 V~Gv~~~r~a~~----sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~s 1514 (2382)
T KOG0890|consen 1439 VEGVSARRFADP----SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRS 1514 (2382)
T ss_pred hhhHHHHhhcCc----cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccC
Confidence 666554211111 1233344566789999999999999999999877776655554455554444443332221111
Q ss_pred CCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHH-----HHHHHHHHHhhCCC
Q 010276 207 FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDE-----AILNFEKVRSIDPY 281 (514)
Q Consensus 207 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~-----A~~~~~~~~~~~~~ 281 (514)
...+.|...-. .+..+.++++.-..... ..+.++..+.. +|.+.....+-+. .++..+... ..|-
T Consensus 1515 ---e~~~~~~s~~~--eaaW~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~-i~~l 1584 (2382)
T KOG0890|consen 1515 ---EEVDELNSLGV--EAAWRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELV-IENL 1584 (2382)
T ss_pred ---HHHHHHHHHHH--HHHhhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHh-hhhH
Confidence 11222322222 23367777777666554 22222222221 5555555443222 111111111 1110
Q ss_pred --------CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC-----hHHHHHHHHHH-hhcChhHHHHHHHHHHH---
Q 010276 282 --------IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR-----PEVFVALSVLW-ERKDERGALSYAEKSIR--- 344 (514)
Q Consensus 282 --------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~-~~~~~~~A~~~~~~~~~--- 344 (514)
....+..+..++. .-+.+... +......+++ .+-|.+....- ...+..+-+-.+++++-
T Consensus 1585 sa~s~~~Sy~~~Y~~~~kLH~-l~el~~~~---~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~ 1660 (2382)
T KOG0890|consen 1585 SACSIEGSYVRSYEILMKLHL-LLELENSI---EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLR 1660 (2382)
T ss_pred HHhhccchHHHHHHHHHHHHH-HHHHHHHH---HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHh
Confidence 0111111111111 01111111 1111112221 12222222111 11333444444554432
Q ss_pred hc----ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CC----
Q 010276 345 ID----ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAM-PQ---- 415 (514)
Q Consensus 345 ~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~---- 415 (514)
.+ ....+.|...|.+....|+++.|-..+-.+.+.. ...++...|..+...|+-..|+..+++.++.+ |+
T Consensus 1661 ~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~ 1739 (2382)
T KOG0890|consen 1661 MRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTP 1739 (2382)
T ss_pred ccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCC
Confidence 12 2345678999999999999999999888887766 34678889999999999999999999999654 32
Q ss_pred ------C------HHHHHHHHHHHHhcCCCh--HHHHHHHHHHHhhCCCChHHHHHHHHHHH------------HcCChh
Q 010276 416 ------S------AKALKLVGDVHASNASGR--EKAKKFYESALRLEPGYLGAALALAELHV------------IEGRNG 469 (514)
Q Consensus 416 ------~------~~~~~~l~~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~la~~~~------------~~g~~~ 469 (514)
. ..+...++...... +++ +.-++.|..+.+..|.....++.+|..|. +.|++.
T Consensus 1740 ~~~~p~~~n~~i~~~~~L~~~~~~~es-~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~ 1818 (2382)
T KOG0890|consen 1740 YTDTPQSVNLLIFKKAKLKITKYLEES-GNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVL 1818 (2382)
T ss_pred ccccchhhhhhhhhhHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHH
Confidence 1 12233444444444 554 56678899999999977777777775442 334554
Q ss_pred H---HHHHHHHHHhhC
Q 010276 470 D---AVSLLERYLKDW 482 (514)
Q Consensus 470 ~---A~~~~~~~~~~~ 482 (514)
. ++-.|.+++...
T Consensus 1819 ~~l~~~~~~~~sl~yg 1834 (2382)
T KOG0890|consen 1819 SLLKAIYFFGRALYYG 1834 (2382)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4 455555665544
No 248
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.05 E-value=0.016 Score=57.00 Aligned_cols=193 Identities=15% Similarity=0.075 Sum_probs=132.7
Q ss_pred hhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHH
Q 010276 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF 119 (514)
Q Consensus 40 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 119 (514)
+...+.+..-+..+...|...+|+..--.|-+ | . .-.+..-+.+.-++
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d--~---~---------------------------~aa~lle~~~~~L~ 391 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAGD--P---E---------------------------MAADLLEQLEWQLF 391 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhCCC--H---H---------------------------HHHHHHHhhhhhhh
Confidence 34456777777888888999988876544321 1 0 01223334456667
Q ss_pred hcCCHHHHHHHHhcCCCC--CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC--HHHHHHHHHhccCcccHhHHH
Q 010276 120 ALGETKAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFF--IEAITALAELGATPKDIISLF 195 (514)
Q Consensus 120 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~~~~~~~~ 195 (514)
..++..--+...+.++.. -.+|......+.......++.+|.....++...-|.. ...-..++
T Consensus 392 ~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~a------------- 458 (894)
T COG2909 392 NGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLA------------- 458 (894)
T ss_pred cccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHH-------------
Confidence 777777777777777654 5678888888999999999999999998887654431 11111111
Q ss_pred hccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHhCChHHHHH
Q 010276 196 AQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN-----IHILLEMAKVDAIIGKNDEAIL 270 (514)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~la~~~~~~~~~~~A~~ 270 (514)
...-..|.+....|+.+.|.+..+.++..-|.+ ..+....|.+..-.|++++|..
T Consensus 459 --------------------e~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~ 518 (894)
T COG2909 459 --------------------EFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALA 518 (894)
T ss_pred --------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHH
Confidence 112345888889999999999999999887765 4567778899999999999999
Q ss_pred HHHHHHhhC----CCC--HHHHHHHHHHHHHhC
Q 010276 271 NFEKVRSID----PYI--MTYMDEYAMLLKVKC 297 (514)
Q Consensus 271 ~~~~~~~~~----~~~--~~~~~~l~~~~~~~~ 297 (514)
+...+.+.. ... ..+....+.++..+|
T Consensus 519 ~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 519 LMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 988887762 222 233344566777777
No 249
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.02 E-value=0.00035 Score=64.49 Aligned_cols=89 Identities=24% Similarity=0.234 Sum_probs=76.8
Q ss_pred HHHhcCCChHHHHHHHHHHHhhCCCChH-HHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHH
Q 010276 426 VHASNASGREKAKKFYESALRLEPGYLG-AALALAELHVIEGRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQE 503 (514)
Q Consensus 426 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 503 (514)
+|.+..|+...|+.++..|+...|.... ...+||.++.+.|-..+|-..+.+++.+..+.+ .++.+|..+..+.+.+.
T Consensus 615 lywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 615 LYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred ceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 3444348999999999999999887544 677899999999999999999999999885544 88899999999999999
Q ss_pred HHHHHHHHhcC
Q 010276 504 ALSHYEAALRL 514 (514)
Q Consensus 504 A~~~~~~al~l 514 (514)
|++.|+.|+++
T Consensus 695 a~~~~~~a~~~ 705 (886)
T KOG4507|consen 695 ALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHHhc
Confidence 99999999864
No 250
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.00 E-value=0.0012 Score=59.28 Aligned_cols=167 Identities=17% Similarity=0.113 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHhhc----CCCChHHHHHHHHHHhh----cChhHHHHHHHH-HHHhcccCchhH
Q 010276 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSI----DPSRPEVFVALSVLWER----KDERGALSYAEK-SIRIDERHIPGY 353 (514)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~----~~~~~A~~~~~~-~~~~~~~~~~~~ 353 (514)
++....+-..|....+|+.-+++.+.+-.. .++.+.+....|.++.+ |+.++|+..+.. .....+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 456667777899999999999999887766 45566777777776665 899999999999 445566778889
Q ss_pred HHHHHHHHhc---------CChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-h-------h----
Q 010276 354 IMKGNLLLSM---------KRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAM-K-------A---- 412 (514)
Q Consensus 354 ~~~~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-------~---- 412 (514)
...|.+|... ...++|+..|.++.+.+|+...-.+++.++...|...+....+++.. . .
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 8899887432 24678888888888888776555666666666665333332222221 0 0
Q ss_pred CCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 010276 413 MPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450 (514)
Q Consensus 413 ~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~ 450 (514)
.-.+-.....++.+..-. |++++|+..++++++..|.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~-~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLA-GDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccccHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhcCCc
Confidence 011222333344444444 6666666666666655443
No 251
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.00038 Score=56.92 Aligned_cols=104 Identities=14% Similarity=0.090 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHH--------hCCCcH----------HHHHHHHHHHHHhCChHHHHHHHHHHHhh
Q 010276 217 HRYVEAQCCIASNDYKGGLELFAELLQ--------RFPNNI----------HILLEMAKVDAIIGKNDEAILNFEKVRSI 278 (514)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~--------~~p~~~----------~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 278 (514)
.+...|+-++..|+|.+|...|+.++. ..|..+ ..+.+.++|+...|++-++++....++..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 345668899999999999999998864 345543 46678889999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHH
Q 010276 279 DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVF 320 (514)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 320 (514)
+|.+..+++..|......-+..+|..-+.++++.+|.-..+.
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 999999999999999998899999999999999888765443
No 252
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.00027 Score=57.76 Aligned_cols=104 Identities=22% Similarity=0.253 Sum_probs=79.3
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHhHhh--------cCCh-----------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010276 350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQEL--------RPDL-----------RSYQGLVHSYLQFSKVKEALYAAREAM 410 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (514)
..++...|+-++..|+|.+|...|+.++.. .|.. +.+.+.+.|+...|++-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 445667788888899999998888887643 2332 235677788888888888888888888
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHH
Q 010276 411 KAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA 454 (514)
Q Consensus 411 ~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 454 (514)
...|.+..+++..|...... -+..+|...|.++++++|.-..+
T Consensus 258 ~~~~~nvKA~frRakAhaa~-Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAV-WNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred hcCCchHHHHHHHHHHHHhh-cCHHHHHHHHHHHHhcChhhHHH
Confidence 88888888888888888776 77788888888888888765443
No 253
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.0057 Score=50.89 Aligned_cols=202 Identities=11% Similarity=0.070 Sum_probs=150.7
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChh-HHH
Q 010276 226 IASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG-KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS-KLS 303 (514)
Q Consensus 226 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~ 303 (514)
.+...-+.|+.+.+.++..+|.+-.+|...-.++..++ +..+-++++.++++.+|.+..+|.-.-.+....|++. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 34567789999999999999999888887777776654 6778899999999999999999999999999999888 788
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHh-cC-----ChHHHHHHHHHh
Q 010276 304 KLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS-MK-----RPEAAVIAFRGA 376 (514)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~A~~~~~~~ 376 (514)
+..+.++..+..+-.+|...-.+... +.++.-+.+....++.+-.+-.+|..+-.+... .| ..+.-+.+..+.
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~ 213 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDK 213 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHH
Confidence 89999999999999999888877777 889999999999999888777777554333222 22 233445677778
Q ss_pred HhhcCCh-HHHHHHHHHHHh-cC--CHHHHHHHHHHHH-hhCCCCHHHHHHHHHHH
Q 010276 377 QELRPDL-RSYQGLVHSYLQ-FS--KVKEALYAAREAM-KAMPQSAKALKLVGDVH 427 (514)
Q Consensus 377 ~~~~~~~-~~~~~l~~~~~~-~~--~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~ 427 (514)
+...|++ .+|..|.-++.. .| .+.+-........ .....+|..+..+..+|
T Consensus 214 I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 214 ILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred HHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 8899999 789888777764 44 2333333333333 22233455555555554
No 254
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.94 E-value=0.026 Score=57.68 Aligned_cols=106 Identities=11% Similarity=0.141 Sum_probs=85.9
Q ss_pred HHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHh----
Q 010276 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA---- 120 (514)
Q Consensus 45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~---- 120 (514)
..+...++++..+.|++|+..|++.....|+-... .++.++.|...+.
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~ 528 (932)
T PRK13184 477 SCLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEG----------------------------YEAQFRLGITLLEKASE 528 (932)
T ss_pred ecccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccc----------------------------hHHHHHhhHHHHHHHHh
Confidence 34556788899999999999999999998866533 3444555444432
Q ss_pred c---CCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHH
Q 010276 121 L---GETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAI 178 (514)
Q Consensus 121 ~---g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 178 (514)
. ..+++|+..|+.+-..+..|--|...|.+|.+.|++++-+++|.-+++..|..+..-
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 529 QGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred cCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 2 258999999999988888898999999999999999999999999999998876654
No 255
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.92 E-value=0.018 Score=53.28 Aligned_cols=182 Identities=17% Similarity=0.134 Sum_probs=101.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC--------CCCHHHHHHHHHH
Q 010276 222 AQCCIASNDYKGGLELFAELLQRFP-NNIHILLEMAKVDAIIGKNDEAILNFEKVRSID--------PYIMTYMDEYAML 292 (514)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~ 292 (514)
+.+..+.|+++.- ...+...+ +.++..+..+......++++++....+++...- +......+..-..
T Consensus 5 ~eaaWrl~~Wd~l----~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 5 AEAAWRLGDWDLL----EEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHhcCChhhH----HHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 6677788888883 33333222 234566666777778899998888888776531 1111112222222
Q ss_pred HHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh------cChh--HHHHHHHHHHHh----cccCchhHHHHHHHH
Q 010276 293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER------KDER--GALSYAEKSIRI----DERHIPGYIMKGNLL 360 (514)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~--~A~~~~~~~~~~----~~~~~~~~~~~~~~~ 360 (514)
+....+.+++..+....... +.....+-..... .+++ +-+-.++..+-. .......|...+.+.
T Consensus 81 lq~L~Elee~~~~~~~~~~~----~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~a 156 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQN----PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLA 156 (352)
T ss_pred HhHHHHHHHHHHHHHhhccc----HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 22333334444333211110 1111111111111 1221 112222222222 334466788888899
Q ss_pred HhcCChHHHHHHHHHhHhhcCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010276 361 LSMKRPEAAVIAFRGAQELRPD-----LRSYQGLVHSYLQFSKVKEALYAAREAMK 411 (514)
Q Consensus 361 ~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (514)
.+.|+++.|...+.++....+. .......+......|+..+|+..++..+.
T Consensus 157 Rk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 157 RKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999988888776532 24566778888889999999988888777
No 256
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.91 E-value=0.014 Score=51.58 Aligned_cols=162 Identities=10% Similarity=0.007 Sum_probs=108.6
Q ss_pred HHhcCChhhHHHHHHHHHhcC-CCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhc
Q 010276 151 YRNSRHNRGAVACYKECLRHC-PFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASN 229 (514)
Q Consensus 151 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (514)
...+|+.+.|..++.++-... ..++.....++.++ |..|......+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~---------------------------------yn~G~~l~~~~ 49 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVC---------------------------------YNIGKSLLSKK 49 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHH---------------------------------HHHHHHHHHcC
Confidence 357899999999999987655 44455555554443 56688888889
Q ss_pred -CHHHHHHHHHHHHHhC----C---Cc-------HHHHHHHHHHHHHhCChH---HHHHHHHHHHhhCCCCHHHHHHHHH
Q 010276 230 -DYKGGLELFAELLQRF----P---NN-------IHILLEMAKVDAIIGKND---EAILNFEKVRSIDPYIMTYMDEYAM 291 (514)
Q Consensus 230 -~~~~A~~~~~~~~~~~----p---~~-------~~~~~~la~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~l~~ 291 (514)
+++.|..+++++.+.- + .. ..++..++.++...+.++ +|....+.+-...|+.+..+...-.
T Consensus 50 ~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~ 129 (278)
T PF08631_consen 50 DKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLE 129 (278)
T ss_pred CChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 9999999999988752 1 11 346677888888877755 4555566666667887777766666
Q ss_pred HHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHH---HhhcChhHHHHHHHHHHHh
Q 010276 292 LLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVL---WERKDERGALSYAEKSIRI 345 (514)
Q Consensus 292 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~A~~~~~~~~~~ 345 (514)
++...++.+++.+.+.+++...+-....+...... +.......+...+...+..
T Consensus 130 il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 130 ILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred HHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 77778889999999998887654222222222222 2224555676777666543
No 257
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.91 E-value=2.3e-05 Score=70.62 Aligned_cols=107 Identities=12% Similarity=0.140 Sum_probs=100.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChh
Q 010276 221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (514)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (514)
.+...+..+.|+.|+..|.++++.+|+++..+...+..+.+.+++..|+.-+.++++.+|....+++..|......+++.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 37777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHH
Q 010276 301 KLSKLVHDLLSIDPSRPEVFVALSVLW 327 (514)
Q Consensus 301 ~A~~~~~~~~~~~~~~~~~~~~l~~~~ 327 (514)
+|...|+......|+++.+...+..+-
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 999999999999999998877766543
No 258
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.91 E-value=0.016 Score=52.32 Aligned_cols=372 Identities=15% Similarity=0.087 Sum_probs=179.8
Q ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCC
Q 010276 44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGE 123 (514)
Q Consensus 44 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 123 (514)
-..+..|-..+++|+|.+|++.+..--..-.+....+.... ++ ...++...-...|.|+...|+
T Consensus 80 ~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~n-i~---------------~l~~df~l~~i~a~sLIe~g~ 143 (549)
T PF07079_consen 80 YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTN-IQ---------------QLFSDFFLDEIEAHSLIETGR 143 (549)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhh-HH---------------HHhhHHHHHHHHHHHHHhcCC
Confidence 35566788889999999999988776544222111111110 00 011333344567899999999
Q ss_pred HHHHHHHHhcCCCC------CccHHHH----HHHHHHHHhc----CChhhHHHHHHHHH---------hc------CCCC
Q 010276 124 TKAAIVEMEGIPSK------ARNLQMS----LLMAKLYRNS----RHNRGAVACYKECL---------RH------CPFF 174 (514)
Q Consensus 124 ~~~A~~~~~~~~~~------~~~~~~~----~~l~~~~~~~----g~~~~A~~~~~~~l---------~~------~p~~ 174 (514)
+.++..+++++... ..+.+.+ .++|+.|.-. ...+-+..+|+.++ +. .|..
T Consensus 144 f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~pee 223 (549)
T PF07079_consen 144 FSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEE 223 (549)
T ss_pred cchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHH
Confidence 99999999885221 2455554 3566666531 12233333333322 11 1221
Q ss_pred HHHHHHHHHhccCcccH----hHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhC--C--
Q 010276 175 IEAITALAELGATPKDI----ISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF--P-- 246 (514)
Q Consensus 175 ~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p-- 246 (514)
.-.-..+-.+..-..+. ..+++...+.. .+|..- ....+..-.-..+.+++..+++.+.... +
T Consensus 224 eL~s~imqhlfi~p~e~l~~~mq~l~~We~~y-------v~p~~~--LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lk 294 (549)
T PF07079_consen 224 ELFSTIMQHLFIVPKERLPPLMQILENWENFY-------VHPNYD--LVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLK 294 (549)
T ss_pred HHHHHHHHHHHhCCHhhccHHHHHHHHHHhhc-------cCCchh--HHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHH
Confidence 11111111111111111 11111111110 011100 0111111111224444444444433221 0
Q ss_pred -CcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH------HHHHHHH-HhCChhHH---HHHHHHHhhcCCC
Q 010276 247 -NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMD------EYAMLLK-VKCDYSKL---SKLVHDLLSIDPS 315 (514)
Q Consensus 247 -~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------~l~~~~~-~~~~~~~A---~~~~~~~~~~~~~ 315 (514)
.-......+-....+.++...|..++.-...++|+.....- .+-.+.. ....+..- +..++..-..+-+
T Consensus 295 e~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD 374 (549)
T PF07079_consen 295 EELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID 374 (549)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc
Confidence 11222333334445678888888888888788887642111 1111111 11112222 2223333223333
Q ss_pred ChHHHHH---HHH-HHhhcC-hhHHHHHHHHHHHhcccCchhHHHH----HHHHH---hcCChHHHHHHHHHhH---hhc
Q 010276 316 RPEVFVA---LSV-LWERKD-ERGALSYAEKSIRIDERHIPGYIMK----GNLLL---SMKRPEAAVIAFRGAQ---ELR 380 (514)
Q Consensus 316 ~~~~~~~---l~~-~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~A~~~~~~~~---~~~ 380 (514)
....... -+. +...|. -++|+..++.+++..|.+....... -..|. ....+..-+. ++..+ .+.
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlk-Le~fi~e~gl~ 453 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLK-LEDFITEVGLT 453 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHhcCCC
Confidence 3222222 222 233344 6788898888888877765432111 11111 0111111111 11111 222
Q ss_pred CCh----HHHHHH--HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 010276 381 PDL----RSYQGL--VHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYES 443 (514)
Q Consensus 381 ~~~----~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 443 (514)
|-. +.-+.+ |..++.+|++.++.-+-.-..++.| ++.++..+|.++... .+|++|..++..
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~-k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMEN-KRYQEAWEYLQK 520 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHH-hhHHHHHHHHHh
Confidence 221 222333 5667789999999988888888999 799999999999998 999999998875
No 259
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.90 E-value=0.032 Score=55.60 Aligned_cols=308 Identities=14% Similarity=0.064 Sum_probs=181.7
Q ss_pred HHHHHHHhcCCCC---C--ccHHHHHHHHHHHH-hcCChhhHHHHHHHHHhcCCC--CHHHHHHHHHhccCcccHhHHHh
Q 010276 125 KAAIVEMEGIPSK---A--RNLQMSLLMAKLYR-NSRHNRGAVACYKECLRHCPF--FIEAITALAELGATPKDIISLFA 196 (514)
Q Consensus 125 ~~A~~~~~~~~~~---~--~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~~~~ 196 (514)
..|+..++.+... + ....+.+.+|.++. ...+++.|...+++++.+... ..+....
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~---------------- 101 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFR---------------- 101 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHH----------------
Confidence 3455666654322 2 24566788899888 688999999999999876643 2222221
Q ss_pred ccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---c-HHHHHHH--HHHHHHhCChHHHHH
Q 010276 197 QTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPN---N-IHILLEM--AKVDAIIGKNDEAIL 270 (514)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~-~~~~~~l--a~~~~~~~~~~~A~~ 270 (514)
..+.++.++.+.+... |...+++.++.... . ....+.+ .......+++..|++
T Consensus 102 --------------------~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~ 160 (608)
T PF10345_consen 102 --------------------CQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALE 160 (608)
T ss_pred --------------------HHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHH
Confidence 2234577777777766 88888888765433 2 2222222 233333478888998
Q ss_pred HHHHHHhhC--CCCHH----HHHHHHHHHHHhCChhHHHHHHHHHhhcC------CC----ChHHHHHHHHHHhh---cC
Q 010276 271 NFEKVRSID--PYIMT----YMDEYAMLLKVKCDYSKLSKLVHDLLSID------PS----RPEVFVALSVLWER---KD 331 (514)
Q Consensus 271 ~~~~~~~~~--~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~----~~~~~~~l~~~~~~---~~ 331 (514)
.++.+.... +.++. +....+.+....+..+++++.++++.... |. ...++..+-.+... |+
T Consensus 161 ~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~ 240 (608)
T PF10345_consen 161 NLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGD 240 (608)
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 888887764 23432 22333556666677777777777663321 11 12333333332222 66
Q ss_pred hhHHHHHH---HHHHHhcccC--------------------------ch-------------hHHHHHHHHHhcCChHHH
Q 010276 332 ERGALSYA---EKSIRIDERH--------------------------IP-------------GYIMKGNLLLSMKRPEAA 369 (514)
Q Consensus 332 ~~~A~~~~---~~~~~~~~~~--------------------------~~-------------~~~~~~~~~~~~~~~~~A 369 (514)
++.+...+ +..+....+. +. .+..-|......+..+.|
T Consensus 241 ~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks 320 (608)
T PF10345_consen 241 VKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKS 320 (608)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHH
Confidence 55444433 3333221110 00 123344555666777688
Q ss_pred HHHHHHhHhhc-------CCh-----------H---------HHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CC----
Q 010276 370 VIAFRGAQELR-------PDL-----------R---------SYQGLVHSYLQFSKVKEALYAAREAMKAM---PQ---- 415 (514)
Q Consensus 370 ~~~~~~~~~~~-------~~~-----------~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~---- 415 (514)
.++++++++.- |.. . .....+.+.+-.+++..|....+.+.... |.
T Consensus 321 ~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 400 (608)
T PF10345_consen 321 EKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYE 400 (608)
T ss_pred HHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhh
Confidence 88887776531 110 0 13456777778899999999888777643 22
Q ss_pred --CHHHHHHHHHHHHhcCCChHHHHHHHH--------HHHhhCCCCh---HHHHHHHHHHHHcCChhH
Q 010276 416 --SAKALKLVGDVHASNASGREKAKKFYE--------SALRLEPGYL---GAALALAELHVIEGRNGD 470 (514)
Q Consensus 416 --~~~~~~~l~~~~~~~~~~~~~A~~~~~--------~a~~~~~~~~---~~~~~la~~~~~~g~~~~ 470 (514)
.+..++..|..+... |+.+.|...|. .+....+.+. -+..++..++...+....
T Consensus 401 ~~~~~~~yL~gl~~q~~-g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 401 SLYPLLHYLLGLYYQST-GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDD 467 (608)
T ss_pred hhhHHHHHHHHHHHHHc-CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccch
Confidence 367788889888888 99999999998 3334444332 255667777776665444
No 260
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.90 E-value=1.4e-05 Score=44.12 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=24.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHH
Q 010276 406 AREAMKAMPQSAKALKLVGDVHASNASGREKAK 438 (514)
Q Consensus 406 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~ 438 (514)
|+++++.+|+++.+|+++|.+|... |++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~-g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQ-GDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHC-cCHHhhc
Confidence 5677777777777777777777776 7777765
No 261
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.89 E-value=0.015 Score=53.94 Aligned_cols=145 Identities=15% Similarity=0.120 Sum_probs=77.3
Q ss_pred CCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCC----ChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCc---h
Q 010276 280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS----RPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI---P 351 (514)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~---~ 351 (514)
......+...+.+..+.|.++.|...+.++....+. .+.+.+..+.+... |+..+|+..++..+....... .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 344567778888888888888888888877765422 34555555555544 777788877777766221111 0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhh-cCC--hHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCCHHHHHH
Q 010276 352 GYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPD--LRSYQGLVHSYLQF------SKVKEALYAAREAMKAMPQSAKALKL 422 (514)
Q Consensus 352 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~ 422 (514)
....+...... ..+... ...... .+. ..++..+|...... +..+++...|+++.+..|+....|+.
T Consensus 223 ~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVIS---STNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred cHHHHhhcccc--cccccc---ccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 00001000000 000000 000000 000 02345555555555 66777777777777777777777777
Q ss_pred HHHHHHh
Q 010276 423 VGDVHAS 429 (514)
Q Consensus 423 l~~~~~~ 429 (514)
.|..+..
T Consensus 298 ~a~~~~~ 304 (352)
T PF02259_consen 298 WALFNDK 304 (352)
T ss_pred HHHHHHH
Confidence 7666554
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0025 Score=54.30 Aligned_cols=147 Identities=14% Similarity=0.030 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHH--HH
Q 010276 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALS--VL 326 (514)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~--~~ 326 (514)
.+.-+..+.-....|++.+|...|..++...|.+.++...++.++...|+.+.|..++...=....... .....+ .+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~~~l~a~i~l 212 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-AHGLQAQIEL 212 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-HHHHHHHHHH
Confidence 344555666777788888888888888888888888888888888888888888777655322221111 111111 12
Q ss_pred Hhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh---HHHHHHHHHHHhcC
Q 010276 327 WER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFS 397 (514)
Q Consensus 327 ~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~~ 397 (514)
+.+ ....+. ..+++.+..+|++..+-+.++..+...|+.++|.+.+-..++.+... .+...+..++...|
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 222 222221 23455566788888888889999999999999988888877765442 44555555554444
No 263
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.80 E-value=4.2e-05 Score=68.99 Aligned_cols=99 Identities=18% Similarity=0.186 Sum_probs=77.3
Q ss_pred cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 010276 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAARE 408 (514)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (514)
+.++.|+..|.++++++|+++..+-+++..+.+.+++..|+..+.++++.+|.. .+|+..|.+....+++.+|+..|+.
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEK 97 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHH
Confidence 777788888888888888877777777778888888888888888888888776 7777778888888888888888888
Q ss_pred HHhhCCCCHHHHHHHHHHHH
Q 010276 409 AMKAMPQSAKALKLVGDVHA 428 (514)
Q Consensus 409 ~~~~~p~~~~~~~~l~~~~~ 428 (514)
.....|+++.+...+-.|-.
T Consensus 98 ~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 98 VKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred hhhcCcCcHHHHHHHHHHHH
Confidence 88888887777666655533
No 264
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=0.064 Score=58.78 Aligned_cols=313 Identities=15% Similarity=0.128 Sum_probs=184.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCC--C-c-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCc
Q 010276 113 KIASCHFALGETKAAIVEMEGIPSK--A-R-NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATP 188 (514)
Q Consensus 113 ~la~~~~~~g~~~~A~~~~~~~~~~--~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 188 (514)
.++..-++.|.|..|+-.+++-... + . ....++.+-.+|...++++.-..+... ...+|.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~s--------------- 1451 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPS--------------- 1451 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCcc---------------
Confidence 6777888888888888888883211 1 1 222334444577777777766655543 112221
Q ss_pred ccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHH
Q 010276 189 KDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEA 268 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A 268 (514)
...+.......|++..|..+|+++++.+|+....+...-......|.++..
T Consensus 1452 -----------------------------l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~ 1502 (2382)
T KOG0890|consen 1452 -----------------------------LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTE 1502 (2382)
T ss_pred -----------------------------HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHH
Confidence 112233445669999999999999999999888888888888889999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHH-HHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh---cChh---HHHHHHHH
Q 010276 269 ILNFEKVRSIDPYIMTYMDEYA-MLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER---KDER---GALSYAEK 341 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~---~A~~~~~~ 341 (514)
+...+-.....++...-+..++ .+.++.++++.-..... ..+.....+.. +|.+... .+.- +.++..+.
T Consensus 1503 i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~ 1578 (2382)
T KOG0890|consen 1503 ILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRE 1578 (2382)
T ss_pred HhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHH
Confidence 9988877776666665555553 45588888888776654 22222222221 5555444 1111 12221111
Q ss_pred HHHhccc--------CchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh------HHHHHHHHHHHhcCCHHHHHHHHH
Q 010276 342 SIRIDER--------HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL------RSYQGLVHSYLQFSKVKEALYAAR 407 (514)
Q Consensus 342 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~ 407 (514)
.. +.|- ....|-.+..++.. -+.+..++...+ ..++. .-|.+....-....+..+-+-.++
T Consensus 1579 ~~-i~~lsa~s~~~Sy~~~Y~~~~kLH~l-~el~~~~~~l~~---~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~R 1653 (2382)
T KOG0890|consen 1579 LV-IENLSACSIEGSYVRSYEILMKLHLL-LELENSIEELKK---VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFR 1653 (2382)
T ss_pred Hh-hhhHHHhhccchHHHHHHHHHHHHHH-HHHHHHHHHhhc---cCccccccccchhHHHHHHHhchhHHHHhHHHHHH
Confidence 11 1110 00111111111110 111111111111 11211 224443333222333444444555
Q ss_pred HHHh---hCC----CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 010276 408 EAMK---AMP----QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480 (514)
Q Consensus 408 ~~~~---~~p----~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (514)
+++- .+| .-...|...|.+.... |.++.|..+.-+|.+.. -+.+....|..++..|+-..|+..+++.++
T Consensus 1654 Rs~l~~~~~~~~~~~~ge~wLqsAriaR~a-G~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1654 RSMLDLRMRSNLKSRLGECWLQSARIARLA-GHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHhccccccchhHHHHHHHHHHHHhc-ccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 5432 222 3367889999998887 99999999998888776 468888999999999999999999999986
Q ss_pred hC
Q 010276 481 DW 482 (514)
Q Consensus 481 ~~ 482 (514)
.+
T Consensus 1731 ~~ 1732 (2382)
T KOG0890|consen 1731 KN 1732 (2382)
T ss_pred hh
Confidence 54
No 265
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.79 E-value=7.4e-05 Score=41.56 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC
Q 010276 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI 282 (514)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 282 (514)
.+++.+|.++...|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456677777777777777777777777776653
No 266
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.78 E-value=6.8e-05 Score=41.68 Aligned_cols=31 Identities=23% Similarity=0.149 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhCCC
Q 010276 454 AALALAELHVIEGRNGDAVSLLERYLKDWAD 484 (514)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 484 (514)
+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555544
No 267
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.74 E-value=0.032 Score=54.60 Aligned_cols=273 Identities=16% Similarity=0.070 Sum_probs=188.1
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-----CChHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHhC--
Q 010276 230 DYKGGLELFAELLQRFPNNIHILLEMAKVDAII-----GKNDEAILNFEKVRSI-----DPYIMTYMDEYAMLLKVKC-- 297 (514)
Q Consensus 230 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~-- 297 (514)
....|..+++.+.+. .+......+|.++..- .+.+.|+.+|+.+... .-..+.+...+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888877554 4677788888888764 5899999999998771 1124557888999998854
Q ss_pred ---ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcC----hhHHHHHHHHHHHhcccCchhHHHHHHHHHhc----CCh
Q 010276 298 ---DYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKD----ERGALSYAEKSIRIDERHIPGYIMKGNLLLSM----KRP 366 (514)
Q Consensus 298 ---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 366 (514)
+.+.|..++.++... .++...+.+|.++..|. ...|..+|..+... .+..+.+.++.+|..- .+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence 667799999988765 56778888999888854 56999999988754 4577888888887643 478
Q ss_pred HHHHHHHHHhHhhcCChHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhc---CCChHHHH
Q 010276 367 EAAVIAFRGAQELRPDLRSYQGLVHSYLQ-FSKVKEALYAAREAMKAMPQS----AKALKLVGDVHASN---ASGREKAK 438 (514)
Q Consensus 367 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~---~~~~~~A~ 438 (514)
..|..++.++.+..+ ..+...++..+.. .+.++.+...+.......-.. ...+.......... ..+...+.
T Consensus 381 ~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKGN-PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred HHHHHHHHHHHHccC-hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHH
Confidence 999999999988872 2333333333322 277777766665554432221 11111122111111 02445666
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHc----CChhHHHHHHHHHHhhCCCchHHHHHHHHHHHh-c--cHHHHHHHHHHH
Q 010276 439 KFYESALRLEPGYLGAALALAELHVIE----GRNGDAVSLLERYLKDWADDSLHVKLAQVFAAT-N--MLQEALSHYEAA 511 (514)
Q Consensus 439 ~~~~~a~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~a 511 (514)
..+.++.. ..++.+...+|.+|..- .+++.|...|.++.... ....+++|.++..- | ....|..+|.++
T Consensus 460 ~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~ 535 (552)
T KOG1550|consen 460 SLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQALFNLGYMHEHGEGIKVLHLAKRYYDQA 535 (552)
T ss_pred HHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHHhhhhhHHhcCcCcchhHHHHHHHHHH
Confidence 66666554 45678888999998765 35899999999998877 67889999988752 1 268888888877
Q ss_pred hc
Q 010276 512 LR 513 (514)
Q Consensus 512 l~ 513 (514)
.+
T Consensus 536 ~~ 537 (552)
T KOG1550|consen 536 SE 537 (552)
T ss_pred Hh
Confidence 54
No 268
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.73 E-value=0.0018 Score=51.41 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC-hHHHHHHHHH
Q 010276 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALKLVGDVHASNASGREKAKKFYESALRLEPGY-LGAALALAEL 461 (514)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~ 461 (514)
-..++..+...+++++|...++.++....+. +-+-..++.+.... |.+++|+..+..... ++. +..-...|.+
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~-~k~D~AL~~L~t~~~--~~w~~~~~elrGDi 168 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQ-KKADAALKTLDTIKE--ESWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHh-hhHHHHHHHHhcccc--ccHHHHHHHHhhhH
Confidence 3455666666666666666666666433222 23345566666666 666666665554221 111 1223445666
Q ss_pred HHHcCChhHHHHHHHHHHhhCCCc
Q 010276 462 HVIEGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 462 ~~~~g~~~~A~~~~~~~~~~~~~~ 485 (514)
+...|+-++|+..|++++...+++
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCCh
Confidence 666666666666666666665443
No 269
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.72 E-value=0.0014 Score=51.66 Aligned_cols=109 Identities=24% Similarity=0.156 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-CCh-HHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 010276 388 GLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNA-SGR-EKAKKFYESALRLEPGYLGAALALAELHVIE 465 (514)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 465 (514)
..+......++.+.++..+++++.+...+. +.... ..+ ......++.. ...+...++..+...
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~---------l~~~~~~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~ 75 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDF---------LPDLDDEEWVEPERERLREL------YLDALERLAEALLEA 75 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SST---------TGGGTTSTTHHHHHHHHHHH------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCC---------CCCCCccHHHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 335555667788888888888887653220 00000 011 1111111111 123444455555555
Q ss_pred CChhHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccHHHHHHHHHHH
Q 010276 466 GRNGDAVSLLERYLKDWADDS-LHVKLAQVFAATNMLQEALSHYEAA 511 (514)
Q Consensus 466 g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a 511 (514)
|++++|+..+++++..+|.++ ++..+..+|...|+..+|+..|++.
T Consensus 76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 76 GDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 566666666666666655554 5555555566666666665555544
No 270
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.71 E-value=3.9e-05 Score=65.87 Aligned_cols=89 Identities=26% Similarity=0.263 Sum_probs=46.8
Q ss_pred HHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHH
Q 010276 359 LLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKA 437 (514)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A 437 (514)
-.+..|.+++|++.|..++.++|.. ..+...+.++.++++...|+..+..++.++|+...-+-..|.....+ |++++|
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll-g~~e~a 201 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL-GNWEEA 201 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHh-hchHHH
Confidence 3344455555555555555555554 34444555555555555555555555555555555555555555544 555555
Q ss_pred HHHHHHHHhhC
Q 010276 438 KKFYESALRLE 448 (514)
Q Consensus 438 ~~~~~~a~~~~ 448 (514)
...+..+.+++
T Consensus 202 a~dl~~a~kld 212 (377)
T KOG1308|consen 202 AHDLALACKLD 212 (377)
T ss_pred HHHHHHHHhcc
Confidence 55555555543
No 271
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.71 E-value=0.023 Score=50.97 Aligned_cols=146 Identities=19% Similarity=0.144 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHHhcccCchhHHHHHHHHHh----cCChHHHHHHHHHhHhhcCC--hHHHHHHHHHHHhcC-------C
Q 010276 332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLS----MKRPEAAVIAFRGAQELRPD--LRSYQGLVHSYLQFS-------K 398 (514)
Q Consensus 332 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~-------~ 398 (514)
..+|..+|..+ ....++.+.+.+|.++.. ..+..+|...|+++.+.... ..+...++..|..-+ +
T Consensus 93 ~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~ 170 (292)
T COG0790 93 KTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYD 170 (292)
T ss_pred HHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHH
Confidence 44555555522 222334445555555544 23556666666666554222 223445555554431 2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC---------
Q 010276 399 VKEALYAAREAMKAMPQSAKALKLVGDVHASNA---SGREKAKKFYESALRLEPGYLGAALALAELHVIEG--------- 466 (514)
Q Consensus 399 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--------- 466 (514)
...|...|.++.... ++.+.+.+|.+|..-. .+..+|..+|.++.+... ..+.+.++ ++...|
T Consensus 171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhc
Confidence 236777777766654 6778888887776521 367888888888888765 77778888 666655
Q ss_pred ------ChhHHHHHHHHHHhhCCC
Q 010276 467 ------RNGDAVSLLERYLKDWAD 484 (514)
Q Consensus 467 ------~~~~A~~~~~~~~~~~~~ 484 (514)
+...|...+..+....+.
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCCh
Confidence 666777777776665544
No 272
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.65 E-value=9.6e-05 Score=41.08 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=30.2
Q ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhccc
Q 010276 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKI 75 (514)
Q Consensus 43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 75 (514)
+++|+.+|.++...|++++|+.+|+++++.+|+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 357999999999999999999999999999884
No 273
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00045 Score=59.23 Aligned_cols=114 Identities=23% Similarity=0.267 Sum_probs=95.8
Q ss_pred ChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHH
Q 010276 38 SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASC 117 (514)
Q Consensus 38 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~ 117 (514)
.+...++.+..-|+-|++.++|..|+..|.++|+..-.+++. +...+...|-|
T Consensus 76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dl---------------------------navLY~NRAAa 128 (390)
T KOG0551|consen 76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDL---------------------------NAVLYTNRAAA 128 (390)
T ss_pred ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccH---------------------------HHHHHhhHHHH
Confidence 567788999999999999999999999999999985444422 23456678899
Q ss_pred HHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHH
Q 010276 118 HFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAI 178 (514)
Q Consensus 118 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 178 (514)
.+..|+|..|+..+... .-.|.+..+++.-+.|++...++++|..+.+..+..+.....+.
T Consensus 129 ~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~ 190 (390)
T KOG0551|consen 129 QLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAI 190 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 99999999999999985 44599999999999999999999999999999988776554444
No 274
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.62 E-value=0.049 Score=49.33 Aligned_cols=210 Identities=17% Similarity=0.096 Sum_probs=107.8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHh-----
Q 010276 272 FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRI----- 345 (514)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~----- 345 (514)
+++++...|-.++.|+.....+...++-+.|+....+.+...|. ....++.++.. .+-+.-..+|+++.+.
T Consensus 291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~y 367 (660)
T COG5107 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKY 367 (660)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHH
Confidence 45555555666667777776667777777777666666554444 44445555544 2322333333333221
Q ss_pred -------------cccC-ch-----------hHHHHHHHHHhcCChHHHHHHHHHhHhhc-CChHHHHHHH-HHHHhcCC
Q 010276 346 -------------DERH-IP-----------GYIMKGNLLLSMKRPEAAVIAFRGAQELR-PDLRSYQGLV-HSYLQFSK 398 (514)
Q Consensus 346 -------------~~~~-~~-----------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~l~-~~~~~~~~ 398 (514)
+|.. ++ +|...-+.-.+..-.+.|...|-++-+.. -.+.++..-+ .-+..+|+
T Consensus 368 s~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d 447 (660)
T COG5107 368 SMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGD 447 (660)
T ss_pred hhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCC
Confidence 0100 00 11111122223333455555555554332 1112222221 22344667
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHcCChhHHHHHHH
Q 010276 399 VKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY--LGAALALAELHVIEGRNGDAVSLLE 476 (514)
Q Consensus 399 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~ 476 (514)
+.-|..+|+-.+...|+++......-..+... ++-+.|...|++++..-... ..+|..+......-|+...+...=+
T Consensus 448 ~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~i-nde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~ 526 (660)
T COG5107 448 RATAYNIFELGLLKFPDSTLYKEKYLLFLIRI-NDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEE 526 (660)
T ss_pred cchHHHHHHHHHHhCCCchHHHHHHHHHHHHh-CcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHH
Confidence 77777777777777777665555555555555 66677777777665432222 3455555555566666666666666
Q ss_pred HHHhhCCCc
Q 010276 477 RYLKDWADD 485 (514)
Q Consensus 477 ~~~~~~~~~ 485 (514)
+.....|..
T Consensus 527 rf~e~~pQe 535 (660)
T COG5107 527 RFRELVPQE 535 (660)
T ss_pred HHHHHcCcH
Confidence 666666653
No 275
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.60 E-value=0.0024 Score=50.29 Aligned_cols=92 Identities=17% Similarity=0.218 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----------------------HHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 010276 219 YVEAQCCIASNDYKGGLELFAELLQRFPNN----------------------IHILLEMAKVDAIIGKNDEAILNFEKVR 276 (514)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~ 276 (514)
...|......|+...++..+++++...... ..+...++..+...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 334556667788899999999888753221 1233445556666677777777777777
Q ss_pred hhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHh
Q 010276 277 SIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLL 310 (514)
Q Consensus 277 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 310 (514)
..+|.+..++..+..++...|+..+|++.|+++.
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 7777777777777777777777777776666553
No 276
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.58 E-value=0.0089 Score=53.95 Aligned_cols=145 Identities=17% Similarity=0.176 Sum_probs=106.0
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhCC------------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHH
Q 010276 236 ELFAELLQRFPNNIHILLEMAKVDAIIGK------------NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLS 303 (514)
Q Consensus 236 ~~~~~~~~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 303 (514)
.-+++.++.+|.+.++|..+....-..-. .+.-+.++++|++.+|++...+..+-....+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35677888999999999888766554422 456678899999999999999988888888888889999
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHhh----cChhHHHHHHHHHHHhccc------------------CchhHHHHHHHHH
Q 010276 304 KLVHDLLSIDPSRPEVFVALSVLWER----KDERGALSYAEKSIRIDER------------------HIPGYIMKGNLLL 361 (514)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~A~~~~~~~~~~~~~------------------~~~~~~~~~~~~~ 361 (514)
+.+++++..+|+++..|...-..... -.++.....|.+++..-.. ...++..+.....
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999988876654444 3456777777777653211 0122345555566
Q ss_pred hcCChHHHHHHHHHhHhhc
Q 010276 362 SMKRPEAAVIAFRGAQELR 380 (514)
Q Consensus 362 ~~~~~~~A~~~~~~~~~~~ 380 (514)
..|-.+.|+..++-.++.+
T Consensus 166 ~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEFN 184 (321)
T ss_pred HCCchHHHHHHHHHHHHHH
Confidence 6777777777777776653
No 277
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.58 E-value=0.097 Score=51.88 Aligned_cols=227 Identities=12% Similarity=0.014 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCC--Ch-------HHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCc--
Q 010276 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS--RP-------EVFVALSVLWER-KDERGALSYAEKSIRIDERHI-- 350 (514)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~-------~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~-- 350 (514)
+......+.......++.+|..+..++...-|. .+ +..-..+.+... +++++|.+..+.++..-|.+.
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 455667788888899999999888887664333 11 111222333333 899999999999998777653
Q ss_pred ---hhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-----HH--HHHHHHHHHhcCCHHH--HHHHHHHH----HhhCC
Q 010276 351 ---PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-----RS--YQGLVHSYLQFSKVKE--ALYAAREA----MKAMP 414 (514)
Q Consensus 351 ---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~--~~~l~~~~~~~~~~~~--A~~~~~~~----~~~~p 414 (514)
......|.+..-.|++++|..+...+.+..... .. ....+.++..+|+... ....+... +...|
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~ 574 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP 574 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 346778888999999999999999888774332 22 3445777788884333 33333222 22234
Q ss_pred CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh----CCCCh--H-HHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc--
Q 010276 415 QSAKALKLVGDVHASNASGREKAKKFYESALRL----EPGYL--G-AALALAELHVIEGRNGDAVSLLERYLKDWADD-- 485 (514)
Q Consensus 415 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~----~~~~~--~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-- 485 (514)
-+.......+.++... -+.+.+..-..+.++. .|... . +...|+.+....|++++|...+........++
T Consensus 575 ~~~f~~~~r~~ll~~~-~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~ 653 (894)
T COG2909 575 RHEFLVRIRAQLLRAW-LRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY 653 (894)
T ss_pred cchhHHHHHHHHHHHH-HHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence 4333444444444433 3355555555554443 23322 2 33479999999999999999999887765332
Q ss_pred h------HHHHHHHHHHHhccHHHHHHHHHH
Q 010276 486 S------LHVKLAQVFAATNMLQEALSHYEA 510 (514)
Q Consensus 486 ~------~~~~l~~~~~~~g~~~~A~~~~~~ 510 (514)
. ++..........|+.++|.....+
T Consensus 654 ~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 654 HVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 1 222222334457888888877665
No 278
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.58 E-value=0.091 Score=53.95 Aligned_cols=328 Identities=13% Similarity=-0.041 Sum_probs=161.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHH
Q 010276 147 MAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCI 226 (514)
Q Consensus 147 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (514)
...++...+.|++|+..|+++....|.-.+.+..+.+.++.. ..++...-
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~ 530 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITL------------------------------LEKASEQG 530 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHH------------------------------HHHHHhcC
Confidence 456777888999999999999999998877776665554211 11111111
Q ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC-----ChhH
Q 010276 227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC-----DYSK 301 (514)
Q Consensus 227 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~ 301 (514)
....+++|+..|+++- ..|.-|--+...|.+|.+.|++++-++++.-+++..|.++..-...-.+-.++. +-..
T Consensus 531 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (932)
T PRK13184 531 DPRDFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRRE 609 (932)
T ss_pred ChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 1134666777776643 345556667777777778888888888888888777776543222211111111 1112
Q ss_pred HHHHHHHHhhcCCCChH-----------------------------H---HHHHHHHHhhcChhHHHHHHHHHHHhcccC
Q 010276 302 LSKLVHDLLSIDPSRPE-----------------------------V---FVALSVLWERKDERGALSYAEKSIRIDERH 349 (514)
Q Consensus 302 A~~~~~~~~~~~~~~~~-----------------------------~---~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~ 349 (514)
+....--++...|.... . .+.+-..+..|...--...++++....|-
T Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 688 (932)
T PRK13184 610 ALVFMLLALWIAPEKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDY- 688 (932)
T ss_pred HHHHHHHHHHhCcccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccH-
Confidence 22222222222232210 0 01111111123333334445555444332
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHhHhh-----cCChH---------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 010276 350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-----RPDLR---------SYQGLVHSYLQFSKVKEALYAAREAMKAMPQ 415 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 415 (514)
.+....-.+....|.++-+.......-+. .|... .+..-..+......++++.+.+. ...|.
T Consensus 689 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 764 (932)
T PRK13184 689 -RALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLD---NTDPT 764 (932)
T ss_pred -HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhh---hCCHH
Confidence 44444444556778877665554433221 11111 12222333344446666654332 22232
Q ss_pred CHHHHH-HHHHHHHhcCCChHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCChhHHHHHHHHHHhh---CCCchH
Q 010276 416 SAKALK-LVGDVHASNASGREKAKKFYESALRLEPG----YLGAALALAELHVIEGRNGDAVSLLERYLKD---WADDSL 487 (514)
Q Consensus 416 ~~~~~~-~l~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~ 487 (514)
.....+ ..+.-.... ++.+ .+-.+.+.+...+. +........++|....++++|-+.+...-.. ...+.+
T Consensus 765 ~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (932)
T PRK13184 765 LILYAFDLFAIQALLD-EEGE-SIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEA 842 (932)
T ss_pred HHHHHHHHHHHHHHHh-ccch-HHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchH
Confidence 221111 111111111 2222 22222222222111 1223344566777778888888887443211 112347
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh
Q 010276 488 HVKLAQVFAATNMLQEALSHYEAAL 512 (514)
Q Consensus 488 ~~~l~~~~~~~g~~~~A~~~~~~al 512 (514)
+...|..+...++.+-|..+|..+.
T Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 843 FVLYGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred HHHHHHHHHhcCchhHHHHHHhhcc
Confidence 7777777777888888888776654
No 279
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.55 E-value=0.086 Score=50.56 Aligned_cols=123 Identities=9% Similarity=0.006 Sum_probs=72.7
Q ss_pred hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchh---------hhhhhhhhhhccccCCCCcccccccCChhH
Q 010276 39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQ---------NSTSSRSSLSTSNRSSSPNSFNVSAINENE 109 (514)
Q Consensus 39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 109 (514)
..++++.|.++|+.....-+++-|...|-++-.. |...-. ....+.+...-|.+++|+..+....
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~d----- 761 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDAD----- 761 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccc-----
Confidence 3456789999999999999999998888775332 211000 0112333333455555555442111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC---CccHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010276 110 VKYKIASCHFALGETKAAIVEMEGIPSK---ARNLQMSLLMAKLYRNSRHNRGAVACYKEC 167 (514)
Q Consensus 110 ~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 167 (514)
-+-.-...+.+.|++-...++++.=... ..-..++..+|..+.....+++|.++|...
T Consensus 762 rrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 762 RRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1112224455667777777766652222 234567778888888888888888887764
No 280
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0014 Score=56.37 Aligned_cols=96 Identities=23% Similarity=0.276 Sum_probs=67.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHhhc---CCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 010276 352 GYIMKGNLLLSMKRPEAAVIAFRGAQELR---PDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDV 426 (514)
Q Consensus 352 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 426 (514)
.+..-|+-|++..+|..|+..|.+.++.. |+. ..|.+.+-+....|+|..|+..+.+++..+|.+..+++.-+.|
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 34456777777777777777777777653 332 2367777777777777777777777777777777777777777
Q ss_pred HHhcCCChHHHHHHHHHHHhhC
Q 010276 427 HASNASGREKAKKFYESALRLE 448 (514)
Q Consensus 427 ~~~~~~~~~~A~~~~~~a~~~~ 448 (514)
+..+ ..+.+|..+.+..+.++
T Consensus 163 ~~eL-e~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 163 LLEL-ERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHH-HHHHHHHHHHhhhhhhh
Confidence 7777 77777777777765554
No 281
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.47 E-value=0.00027 Score=38.87 Aligned_cols=33 Identities=18% Similarity=0.382 Sum_probs=30.4
Q ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccC
Q 010276 44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKIV 76 (514)
Q Consensus 44 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 76 (514)
++++.+|.++.+.|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999864
No 282
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.46 E-value=0.07 Score=47.21 Aligned_cols=159 Identities=15% Similarity=0.070 Sum_probs=74.4
Q ss_pred HHHHHHHHHhcCChH---HHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHH
Q 010276 353 YIMKGNLLLSMKRPE---AAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS-AKALKLVGDVH 427 (514)
Q Consensus 353 ~~~~~~~~~~~~~~~---~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~ 427 (514)
+..++.++...+.++ +|....+.+....|+. ..+...-.+..+.++.+++.+.+.+++...+-. ...-..+..+.
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~ 166 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIK 166 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 455666666666544 3334444444445554 233233344444677777777777777654311 11111122221
Q ss_pred HhcCCChHHHHHHHHHHHhh--CCCChHHHHH---HHHHHHHcC--ChhHH--HHHHHHHHh----hC--CCc-------
Q 010276 428 ASNASGREKAKKFYESALRL--EPGYLGAALA---LAELHVIEG--RNGDA--VSLLERYLK----DW--ADD------- 485 (514)
Q Consensus 428 ~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~---la~~~~~~g--~~~~A--~~~~~~~~~----~~--~~~------- 485 (514)
.-.......|...+...+.. .|.... +.. +..++...+ +.... ++.+...+. .. |-+
T Consensus 167 ~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~ 245 (278)
T PF08631_consen 167 QLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAI 245 (278)
T ss_pred HHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 11113345566666555542 222211 222 111222111 11122 222222222 11 111
Q ss_pred -hHHHHHHHHHHHhccHHHHHHHHHHHh
Q 010276 486 -SLHVKLAQVFAATNMLQEALSHYEAAL 512 (514)
Q Consensus 486 -~~~~~l~~~~~~~g~~~~A~~~~~~al 512 (514)
...++.|...++.++|.+|..+|+-++
T Consensus 246 ~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 246 HTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 356677888889999999999998765
No 283
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.43 E-value=0.082 Score=47.40 Aligned_cols=157 Identities=11% Similarity=0.070 Sum_probs=82.3
Q ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh----CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCC
Q 010276 227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAII----GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV----KCD 298 (514)
Q Consensus 227 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 298 (514)
..+++..+...+..+-.. .++.....++.++... .+..+|..+|..+. ...++.+.+.+|.++.. ..+
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccC
Confidence 446677777777766542 2235566666666543 34666777777433 34456666667777665 336
Q ss_pred hhHHHHHHHHHhhcCCCC-hHHHHHHHHHHhhcC--------hhHHHHHHHHHHHhcccCchhHHHHHHHHHh----cCC
Q 010276 299 YSKLSKLVHDLLSIDPSR-PEVFVALSVLWERKD--------ERGALSYAEKSIRIDERHIPGYIMKGNLLLS----MKR 365 (514)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 365 (514)
..+|..+|.++....-.. ......++..+..|. ...|...|.++-... ++.+...+|.+|.. ..+
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcC
Confidence 677777777766653322 233555666555542 124444444444333 34444444544432 224
Q ss_pred hHHHHHHHHHhHhhcCChHHHHHHH
Q 010276 366 PEAAVIAFRGAQELRPDLRSYQGLV 390 (514)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~~~~~~l~ 390 (514)
+.+|...|.++.+... ....+.++
T Consensus 207 ~~~A~~wy~~Aa~~g~-~~a~~~~~ 230 (292)
T COG0790 207 LKKAFRWYKKAAEQGD-GAACYNLG 230 (292)
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 4555555555544433 33344444
No 284
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.42 E-value=0.019 Score=52.39 Aligned_cols=144 Identities=18% Similarity=0.143 Sum_probs=93.2
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhh--------------C------------CCC---HHHHHHHH
Q 010276 240 ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI--------------D------------PYI---MTYMDEYA 290 (514)
Q Consensus 240 ~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------------~------------~~~---~~~~~~l~ 290 (514)
..+..+|-+.+++..++.++..+|+.+.|.+.+++++=. + +.| ..+.....
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 345789999999999999999999999999998888531 1 111 23445556
Q ss_pred HHHHHhCChhHHHHHHHHHhhcCCC-ChHHHHHHHHHHhh--cChhHHHHHHHHHHHhcc-----cCchhHHHHHHHHHh
Q 010276 291 MLLKVKCDYSKLSKLVHDLLSIDPS-RPEVFVALSVLWER--KDERGALSYAEKSIRIDE-----RHIPGYIMKGNLLLS 362 (514)
Q Consensus 291 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~--~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 362 (514)
..+.+.|-+..|.++.+-++.++|. ||-........+.. ++++--++.++....... .-|..-+..+.++..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR 190 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence 6677777777777777777777777 55544444443333 666655555555433111 123455566666666
Q ss_pred cCCh---------------HHHHHHHHHhHhhcCCh
Q 010276 363 MKRP---------------EAAVIAFRGAQELRPDL 383 (514)
Q Consensus 363 ~~~~---------------~~A~~~~~~~~~~~~~~ 383 (514)
.++. ++|...+.+|+...|..
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 6666 66667777776666653
No 285
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.41 E-value=0.02 Score=51.77 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=43.4
Q ss_pred HHHHHHHHhcccCchhHHHHHHHHHhcCC------------hHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHH
Q 010276 337 SYAEKSIRIDERHIPGYIMKGNLLLSMKR------------PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEAL 403 (514)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~ 403 (514)
.-+++.++.+|.+..+|..+....-..-. .+.-+.+|++|++.+|++ ..+..+-....+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34667777788888887777665433322 223334444444444444 33333333334444444444
Q ss_pred HHHHHHHhhCCCCHHHHHH
Q 010276 404 YAAREAMKAMPQSAKALKL 422 (514)
Q Consensus 404 ~~~~~~~~~~p~~~~~~~~ 422 (514)
..+++++..+|+++..|..
T Consensus 86 ~~we~~l~~~~~~~~LW~~ 104 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWRE 104 (321)
T ss_pred HHHHHHHHHCCCChHHHHH
Confidence 4444444444444444433
No 286
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.32 E-value=0.021 Score=52.12 Aligned_cols=100 Identities=15% Similarity=0.009 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-CC----CChHHHHHH
Q 010276 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQ-SAKALKLVGDVHASNASGREKAKKFYESALRL-EP----GYLGAALAL 458 (514)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-~~----~~~~~~~~l 458 (514)
+.+.....+.+.|-+..|.++.+-.+.++|. |+-........|.-..++++--+..++..... .+ .-|...+..
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 3456677778888888999988888888888 77666666665555547777666666654442 11 134566777
Q ss_pred HHHHHHcCCh---------------hHHHHHHHHHHhhCCC
Q 010276 459 AELHVIEGRN---------------GDAVSLLERYLKDWAD 484 (514)
Q Consensus 459 a~~~~~~g~~---------------~~A~~~~~~~~~~~~~ 484 (514)
+-++...++. ++|...+.+++...|.
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 7777777777 7888888888776653
No 287
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.29 E-value=0.022 Score=44.35 Aligned_cols=136 Identities=15% Similarity=0.104 Sum_probs=90.3
Q ss_pred hcCCHHHHHHHHhcCCCC---CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHh
Q 010276 120 ALGETKAAIVEMEGIPSK---ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFA 196 (514)
Q Consensus 120 ~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 196 (514)
..|..++|+.-|..+... ....-+.+..+.+..+.|+...|+..|.++-...|- +.....++++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARl------------ 136 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARL------------ 136 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHH------------
Confidence 567778888888776433 233445677788999999999999999998766552 2233233222
Q ss_pred ccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 010276 197 QTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQ-RFPNNIHILLEMAKVDAIIGKNDEAILNFEKV 275 (514)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 275 (514)
.-+..+...|.|++-....+.+-. .+|-...+.-.+|..-++.|++.+|..+|..+
T Consensus 137 -----------------------raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 137 -----------------------RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred -----------------------HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 226667778888887776665532 34445566777888888888888888888887
Q ss_pred HhhCCCCHHHHHHHHHH
Q 010276 276 RSIDPYIMTYMDEYAML 292 (514)
Q Consensus 276 ~~~~~~~~~~~~~l~~~ 292 (514)
.. +...+......+.+
T Consensus 194 a~-Da~aprnirqRAq~ 209 (221)
T COG4649 194 AN-DAQAPRNIRQRAQI 209 (221)
T ss_pred Hc-cccCcHHHHHHHHH
Confidence 76 33334444444433
No 288
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.26 E-value=0.00014 Score=62.52 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=86.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh
Q 010276 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (514)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (514)
..+.-.+..|.+++|++.|..++..+|.....+...+.++..+++...|+..+..++.++|+....+-..+.....+|+|
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 34666778899999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred hHHHHHHHHHhhcCC
Q 010276 300 SKLSKLVHDLLSIDP 314 (514)
Q Consensus 300 ~~A~~~~~~~~~~~~ 314 (514)
++|...+..+.+++-
T Consensus 199 e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 199 EEAAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999887653
No 289
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.23 E-value=0.00078 Score=37.31 Aligned_cols=30 Identities=20% Similarity=0.166 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhCC
Q 010276 454 AALALAELHVIEGRNGDAVSLLERYLKDWA 483 (514)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 483 (514)
+++.+|.++..+|++++|...|++++++.|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 444455555555555555555555555544
No 290
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.22 E-value=0.056 Score=51.26 Aligned_cols=51 Identities=18% Similarity=0.335 Sum_probs=36.3
Q ss_pred HHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 9 TALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 9 ~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
..+++.|+|..|..++..-+. ...|..+|...+..=+++-|.+.|.++-.+
T Consensus 564 ~q~Ieag~f~ea~~iaclgVv-------------~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl 614 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGVT-------------DTDWRELAMEALEALDFETARKAYIRVRDL 614 (1081)
T ss_pred hhhhhccchhhhhccccccee-------------cchHHHHHHHHHhhhhhHHHHHHHHHHhcc
Confidence 456778888887776553222 125778888888888899999988886543
No 291
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.21 E-value=0.00073 Score=37.10 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276 454 AALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (514)
+++.+|.++.+.|++++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56677777777777777777777777777653
No 292
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.19 E-value=0.0007 Score=38.01 Aligned_cols=29 Identities=34% Similarity=0.449 Sum_probs=24.7
Q ss_pred HHHHHHhhHhhhhhHHHHHHHHHHHHhhc
Q 010276 45 NLIILGDSLFRDREYRRAIHTYKQALQYY 73 (514)
Q Consensus 45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 73 (514)
++..+|.++.+.|+|++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999999977654
No 293
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.065 Score=49.91 Aligned_cols=237 Identities=17% Similarity=0.098 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhCChhHHHHHHH
Q 010276 232 KGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI----MTYMDEYAMLLKVKCDYSKLSKLVH 307 (514)
Q Consensus 232 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~ 307 (514)
....+.+.......|+++-.....+..+...|+.+.|+..++..++ +.. .-.++.++.++.-+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4445555555667898888888889999999998888888888877 222 2245677888888889999999998
Q ss_pred HHhhcCCCChHHHHHHH-HHHhh---------cChhHHHHHHHHH---HHhcccCchhH---HHHHHHHHhcCChHHHHH
Q 010276 308 DLLSIDPSRPEVFVALS-VLWER---------KDERGALSYAEKS---IRIDERHIPGY---IMKGNLLLSMKRPEAAVI 371 (514)
Q Consensus 308 ~~~~~~~~~~~~~~~l~-~~~~~---------~~~~~A~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~A~~ 371 (514)
.+.+...-+.-.+..++ .++.. |+-+.+..+++.. +...|.+...- ...+.-+...+.
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~------ 401 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP------ 401 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc------
Confidence 88877655554444444 34433 3444444433332 23333332211 111111221111
Q ss_pred HHHHhHhhcCCh---HHHHHHHHHHHhc--CCHHHHHHHHHHHH---hh-CCCCH-HHHHHHHHHHHhcCCChHHHHHHH
Q 010276 372 AFRGAQELRPDL---RSYQGLVHSYLQF--SKVKEALYAAREAM---KA-MPQSA-KALKLVGDVHASNASGREKAKKFY 441 (514)
Q Consensus 372 ~~~~~~~~~~~~---~~~~~l~~~~~~~--~~~~~A~~~~~~~~---~~-~p~~~-~~~~~l~~~~~~~~~~~~~A~~~~ 441 (514)
.++.. ..+..++..+..- ....+.. -++... .. ++++. --...+|.++..+ |+...|..+|
T Consensus 402 -------~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~L-g~~~~a~~~f 472 (546)
T KOG3783|consen 402 -------LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNL-GDSEVAPKCF 472 (546)
T ss_pred -------ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 11111 0123333222211 1122222 111111 11 23322 2346788888888 9999999999
Q ss_pred HHHHhh---CCC----ChHHHHHHHHHHHHcCC-hhHHHHHHHHHHhhCCCc
Q 010276 442 ESALRL---EPG----YLGAALALAELHVIEGR-NGDAVSLLERYLKDWADD 485 (514)
Q Consensus 442 ~~a~~~---~~~----~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~ 485 (514)
..+++. ... .|.+++.+|.++..+|. ..++..++.+|-+...+.
T Consensus 473 ~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 473 KIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 988743 111 26699999999999998 999999999998887664
No 294
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.15 E-value=0.26 Score=47.46 Aligned_cols=200 Identities=12% Similarity=0.006 Sum_probs=104.4
Q ss_pred hcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccC
Q 010276 120 ALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTP 199 (514)
Q Consensus 120 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 199 (514)
..-..++|++..+ ...+++.|.+++......-.++-|...|-++-. .|. ......|..+...
T Consensus 675 e~vgledA~qfiE----dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~G-ik~vkrl~~i~s~------------ 736 (1189)
T KOG2041|consen 675 EAVGLEDAIQFIE----DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAG-IKLVKRLRTIHSK------------ 736 (1189)
T ss_pred HHhchHHHHHHHh----cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccc-hhHHHHhhhhhhH------------
Confidence 3344566766665 346889999999988887777777777766422 121 1111122111100
Q ss_pred CcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC
Q 010276 200 NRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID 279 (514)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 279 (514)
...+|.+-.--|++++|...|-.+-.. + .....+...|+|-...+.++..-.-+
T Consensus 737 ------------------~~q~aei~~~~g~feeaek~yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~d~ 790 (1189)
T KOG2041|consen 737 ------------------EQQRAEISAFYGEFEEAEKLYLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGSDD 790 (1189)
T ss_pred ------------------HHHhHhHhhhhcchhHhhhhhhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCCCc
Confidence 012244444447777777777544221 1 11234445566655555554432211
Q ss_pred CC--CHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHH
Q 010276 280 PY--IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMK 356 (514)
Q Consensus 280 ~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~ 356 (514)
.+ -..++..+|..+.....|++|.++|...-... ....++.. ..+++ ++.....-|++...+-.+
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e--------~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~ 858 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTE--------NQIECLYRLELFGE----LEVLARTLPEDSELLPVM 858 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH--------hHHHHHHHHHhhhh----HHHHHHhcCcccchHHHH
Confidence 11 13566777777777777777777766542211 11222222 22222 222333446666666667
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 010276 357 GNLLLSMKRPEAAVIAFRG 375 (514)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~ 375 (514)
|.++...|--++|.+.|-+
T Consensus 859 a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 859 ADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHhhchHHHHHHHHHh
Confidence 7777777777776666544
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.15 E-value=0.00059 Score=38.32 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh
Q 010276 488 HVKLAQVFAATNMLQEALSHYEAAL 512 (514)
Q Consensus 488 ~~~l~~~~~~~g~~~~A~~~~~~al 512 (514)
+..||.+|...|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666654
No 296
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.08 E-value=0.0099 Score=41.67 Aligned_cols=73 Identities=23% Similarity=0.253 Sum_probs=44.9
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc---hHHHHHHHHHHHhccHHHHHHHHHH
Q 010276 438 KKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLHVKLAQVFAATNMLQEALSHYEA 510 (514)
Q Consensus 438 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 510 (514)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++. .+...+-.++..+|.-+.-...|++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 455666677777777777777777777777777777777777766543 3666666666666665444444443
No 297
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.06 E-value=0.012 Score=42.13 Aligned_cols=90 Identities=19% Similarity=0.119 Sum_probs=55.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhCC-----------hHHHHHHHHHHHhhCCCCHHHHH
Q 010276 222 AQCCIASNDYKGGLELFAELLQRFPNNI---HILLEMAKVDAIIGK-----------NDEAILNFEKVRSIDPYIMTYMD 287 (514)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~~~-----------~~~A~~~~~~~~~~~~~~~~~~~ 287 (514)
|..++..|++-+|+++.+..+...+++. ..+..-|.++..+.. .-.++++|.++..+.|..+..++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 6778899999999999999999887765 455555666654432 12345555555555555555555
Q ss_pred HHHHHHHHhCChhHHHHHHHHHhh
Q 010276 288 EYAMLLKVKCDYSKLSKLVHDLLS 311 (514)
Q Consensus 288 ~l~~~~~~~~~~~~A~~~~~~~~~ 311 (514)
.+|.-+.....|+++..-.++.+.
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhc
Confidence 555444444444555444444443
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.03 E-value=0.085 Score=41.05 Aligned_cols=82 Identities=15% Similarity=0.073 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q 010276 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE 465 (514)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 465 (514)
+..+..+-...++.+++...+..+--+.|+.+..-..-|.++... |++.+|+..++.+....|..+.+.-.++.|+..+
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r-~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVR-GDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-CCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 344444445555666666666655556666666666666666665 6666666666666555555555555566666555
Q ss_pred CCh
Q 010276 466 GRN 468 (514)
Q Consensus 466 g~~ 468 (514)
|+.
T Consensus 92 ~D~ 94 (160)
T PF09613_consen 92 GDP 94 (160)
T ss_pred CCh
Confidence 554
No 299
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.90 E-value=0.024 Score=39.78 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhCChh
Q 010276 234 GLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI--MTYMDEYAMLLKVKCDYS 300 (514)
Q Consensus 234 A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 300 (514)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.++.. ..+...+..++...|.-+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 3556777888899999999999999999999999999999999887765 445555555555555543
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.80 E-value=0.045 Score=42.53 Aligned_cols=80 Identities=15% Similarity=0.027 Sum_probs=67.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh
Q 010276 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (514)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (514)
....+-...++.+++..++..+.-..|..+++-..-|.++...|++.+|+..|+.+....|..+.+--.++.|+...|+.
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33555667788888888888888889999998888999999999999999999998888888888888888888887775
No 301
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.74 E-value=0.011 Score=36.33 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q 010276 251 ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMD 287 (514)
Q Consensus 251 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 287 (514)
.++.+|..+++.|+|++|..+.+.+++.+|++..+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4555666666666666666666666666666655443
No 302
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.70 E-value=0.31 Score=41.18 Aligned_cols=94 Identities=13% Similarity=0.064 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhhcCCh-------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HH
Q 010276 354 IMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS--AK 418 (514)
Q Consensus 354 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~ 418 (514)
..+|.+++..|+|..-.+.+++.-..+... +.|..-...|..+++-.+-...|++++.+...- |.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 468999999999988888887776543221 134444677888888888888899988764322 22
Q ss_pred HH----HHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 010276 419 AL----KLVGDVHASNASGREKAKKFYESALRLE 448 (514)
Q Consensus 419 ~~----~~l~~~~~~~~~~~~~A~~~~~~a~~~~ 448 (514)
+. -.=|..+.+. |++++|...|-.|++..
T Consensus 229 ImGvIRECGGKMHlre-g~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLRE-GEFEKAHTDFFEAFKNY 261 (440)
T ss_pred HHhHHHHcCCcccccc-chHHHHHhHHHHHHhcc
Confidence 22 2234456665 88999998888888753
No 303
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.63 E-value=0.0068 Score=51.64 Aligned_cols=66 Identities=18% Similarity=0.081 Sum_probs=36.1
Q ss_pred HHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 010276 360 LLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD 425 (514)
Q Consensus 360 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 425 (514)
..+.|+.++|...|+.++.+.|++ +++..+|......++.-+|-.+|-+++.+.|.+.+++.+.+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 344555555555555555555555 455555555555555555555555555555555555554443
No 304
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.61 E-value=0.011 Score=50.44 Aligned_cols=73 Identities=22% Similarity=0.194 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 010276 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM 291 (514)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 291 (514)
...|.-....|+.++|..+|+.++...|++++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+.
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 3445666778899999999999999999999999999998888888889999999999999988887766544
No 305
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.54 E-value=0.0043 Score=33.60 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=29.1
Q ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHhhccc
Q 010276 44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKI 75 (514)
Q Consensus 44 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 75 (514)
..++.+|.+++..|++++|+..|+++++.+|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46789999999999999999999999998774
No 306
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.50 E-value=0.043 Score=39.45 Aligned_cols=92 Identities=16% Similarity=0.105 Sum_probs=52.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhcC---CC-------hHHHHHHHHHHHhhCCCChHHHH
Q 010276 390 VHSYLQFSKVKEALYAAREAMKAMPQSA---KALKLVGDVHASNA---SG-------REKAKKFYESALRLEPGYLGAAL 456 (514)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~---~~-------~~~A~~~~~~a~~~~~~~~~~~~ 456 (514)
+.-++..|++-+|+++.+..+...+++. ..+..-|.++..+. .+ .-.++++|.++..+.|..+..++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 4455666666666666666666665554 33344455544331 11 13456666677777776666666
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhh
Q 010276 457 ALAELHVIEGRNGDAVSLLERYLKD 481 (514)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~~~~~ 481 (514)
.+|.-+....-|+++..-.++++..
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 6666555555566666666665554
No 307
>PRK10941 hypothetical protein; Provisional
Probab=96.49 E-value=0.042 Score=47.66 Aligned_cols=76 Identities=9% Similarity=-0.047 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHH
Q 010276 251 ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVL 326 (514)
Q Consensus 251 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 326 (514)
.+..+-.++.+.++++.|+.+.+.++...|+++.-+...|.+|.+.|.+..|..-++..++..|++|.+-.....+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4455667788888888888888888888888888888888888888888888888888888888888765554443
No 308
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.47 E-value=0.016 Score=35.61 Aligned_cols=40 Identities=13% Similarity=-0.134 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHH
Q 010276 142 QMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITAL 181 (514)
Q Consensus 142 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 181 (514)
+.++.+|..+.+.|+|++|....+.+++..|++..+....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 4678899999999999999999999999999999887654
No 309
>PRK10941 hypothetical protein; Provisional
Probab=96.44 E-value=0.05 Score=47.19 Aligned_cols=70 Identities=13% Similarity=0.049 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHH
Q 010276 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAAL 456 (514)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 456 (514)
..++-.++.+.++++.|+.+.+.++...|+++.-+.-.|.+|.+. |.+..|...++..++..|+++.+-.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL-~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQL-DCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHhCCCchhHHH
Confidence 445566666777777777777777777777777777777777776 7777777777777777776665443
No 310
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.42 E-value=0.073 Score=38.49 Aligned_cols=82 Identities=17% Similarity=0.149 Sum_probs=49.8
Q ss_pred CChHHHHHHHHHHHhhCCCC------------hHHHHHHHHHHHHcCChhHHHHHHHHHHhhC-------CCc-----hH
Q 010276 432 SGREKAKKFYESALRLEPGY------------LGAALALAELHVIEGRNGDAVSLLERYLKDW-------ADD-----SL 487 (514)
Q Consensus 432 ~~~~~A~~~~~~a~~~~~~~------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~~-----~~ 487 (514)
|-+++|...+++++.....- ...+-.|+..+..+|+|++++...++++... .+. .+
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa 102 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA 102 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence 66667777777766643221 2245557777777777777776666665533 222 24
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 488 HVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 488 ~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
.+..+..+..+|+.++|+..|+.+-+
T Consensus 103 Vfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 103 VFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 55667777788888888888887643
No 311
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.42 E-value=0.64 Score=44.56 Aligned_cols=81 Identities=12% Similarity=-0.023 Sum_probs=40.9
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC-------------CCCHHHHHHH
Q 010276 223 QCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID-------------PYIMTYMDEY 289 (514)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~~l 289 (514)
..+...|.+++|...---.+ - ..-|..+|.-....=+++-|.+.|.++-.+. .....--..+
T Consensus 564 ~q~Ieag~f~ea~~iaclgV--v---~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl 638 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGV--T---DTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL 638 (1081)
T ss_pred hhhhhccchhhhhcccccce--e---cchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH
Confidence 34556677777654321111 0 1234555665556666677776666553210 0000112345
Q ss_pred HHHHHHhCChhHHHHHHHH
Q 010276 290 AMLLKVKCDYSKLSKLVHD 308 (514)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~ 308 (514)
+.++.-.|++.+|.++|.+
T Consensus 639 A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 639 ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHhhhhHHHHHHHHHH
Confidence 6666666777776666654
No 312
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.41 E-value=0.03 Score=46.82 Aligned_cols=91 Identities=19% Similarity=0.109 Sum_probs=51.9
Q ss_pred hcCCHHHHHHHHHHHHhh----CCCC---HHHHHHHHHHHHhcCCChH-------HHHHHHHHHHhhCC--CC----hHH
Q 010276 395 QFSKVKEALYAAREAMKA----MPQS---AKALKLVGDVHASNASGRE-------KAKKFYESALRLEP--GY----LGA 454 (514)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~~~~~~-------~A~~~~~~a~~~~~--~~----~~~ 454 (514)
....+++|++.|.-++-. .+.. +..+..+|++|... |+.+ .|...|.++++... .. ..+
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~-~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDL-GDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcc-CCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 344677777777766532 1111 44556677777776 6643 34444444443321 11 235
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276 455 ALALAELHVIEGRNGDAVSLLERYLKDWADDS 486 (514)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 486 (514)
.+.+|.+..+.|++++|..+|.+++.....+.
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 66677777777777777777777766655554
No 313
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.31 E-value=0.93 Score=42.20 Aligned_cols=78 Identities=10% Similarity=-0.030 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCccHHHHHHHHHHHHhcCC-hhhHHHHHHHHHhcCCCCHHHHHHHHHh
Q 010276 107 ENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRH-NRGAVACYKECLRHCPFFIEAITALAEL 184 (514)
Q Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 184 (514)
++..+........+.+.+.+--.++.++ ...|.+++.|..-|.-.+..+. .+.|...|.++++.+|+++..|....++
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence 3444444444444555577777777774 5569999999998887777665 8999999999999999999998765544
No 314
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.15 E-value=0.19 Score=40.72 Aligned_cols=105 Identities=12% Similarity=0.122 Sum_probs=78.0
Q ss_pred hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHH
Q 010276 39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCH 118 (514)
Q Consensus 39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 118 (514)
...--.++..+|+.|.+.|++++|++.|.++........ ...++.+.+.++.
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~----------------------------~~id~~l~~irv~ 83 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG----------------------------HKIDMCLNVIRVA 83 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH----------------------------HHHHHHHHHHHHH
Confidence 445567899999999999999999999999877642111 2356777888888
Q ss_pred HhcCCHHHHHHHHhcCC---CCCcc----HHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 010276 119 FALGETKAAIVEMEGIP---SKARN----LQMSLLMAKLYRNSRHNRGAVACYKECLRHC 171 (514)
Q Consensus 119 ~~~g~~~~A~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 171 (514)
+..|++......+.++. ..+.+ .......|..+...++|..|...|-.+....
T Consensus 84 i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 84 IFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 89999999888887742 22222 2234556778888999999999988876444
No 315
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.14 E-value=0.11 Score=47.58 Aligned_cols=128 Identities=12% Similarity=0.092 Sum_probs=101.3
Q ss_pred HHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcC-ChHHHHHHHHHHHhcCCHHH
Q 010276 323 LSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP-DLRSYQGLVHSYLQFSKVKE 401 (514)
Q Consensus 323 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 401 (514)
+-..+..|+.-.|-.-+..++...|.+|......+.+....|.|+.+...+..+-..-. .+.+...+-......|++++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 33344448888888888889999999999888999999999999999888877655433 33566667777888999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276 402 ALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (514)
Q Consensus 402 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 451 (514)
|.....-++...-+++++...-+...... |-++++..++++.+.++|..
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l-~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADAL-QLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHH-hHHHHHHHHHHHHhccCChh
Confidence 99998888877777777776666666666 88899999999999888754
No 316
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.11 E-value=0.1 Score=47.77 Aligned_cols=129 Identities=10% Similarity=0.030 Sum_probs=104.0
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHH
Q 010276 223 QCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKL 302 (514)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 302 (514)
.-....|+.-.|-+....++...|..|......+.+....|+|+.+...+..+-..-.....+...+-......|++++|
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 34566799999999999999999999999999999999999999999888766554444445566667778889999999
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCch
Q 010276 303 SKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIP 351 (514)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~ 351 (514)
.....-++...-.++++....+..... |-++++..++++.+.++|....
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 999999988777777776655544444 8889999999999998876443
No 317
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.99 E-value=0.014 Score=31.38 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhCC
Q 010276 454 AALALAELHVIEGRNGDAVSLLERYLKDWA 483 (514)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 483 (514)
++..+|.++...|++++|...++++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555555444
No 318
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.98 E-value=0.58 Score=36.81 Aligned_cols=140 Identities=18% Similarity=0.126 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC----HHHHHHHHHH
Q 010276 219 YVEAQCCIASNDYKGGLELFAELLQRFPNN--IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI----MTYMDEYAML 292 (514)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~ 292 (514)
|..+.-+.+.+..++|+..|..+-+..-.+ .-+....+.+....|+...|+..|..+-...|.. -.+...-+.+
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l 141 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence 444666667788888888888877654443 3355667788888888888888888876644322 1244555666
Q ss_pred HHHhCChhHHHHHHHHHh-hcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHH
Q 010276 293 LKVKCDYSKLSKLVHDLL-SIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNL 359 (514)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 359 (514)
+...|.|+......+.+- ..+|-...+...||..-.+ |++.+|...|.+... +...|......+.+
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 777777777665554432 2233344455555554444 777777777766654 33334444444443
No 319
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.98 E-value=1.9 Score=42.83 Aligned_cols=406 Identities=13% Similarity=0.075 Sum_probs=210.1
Q ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcC
Q 010276 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALG 122 (514)
Q Consensus 43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 122 (514)
...+..+-..+++.|++++-...=+++..+.|..+..|.....-. ...-..+
T Consensus 113 ~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~----------------------------~~mt~s~ 164 (881)
T KOG0128|consen 113 YAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDE----------------------------LSMTQSE 164 (881)
T ss_pred hHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHH----------------------------HhhccCc
Confidence 344555666667777777666666666666664443332211100 0111235
Q ss_pred CHHHHHHHHhcCCCCCccHHHHHHHHHHH-------HhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHH
Q 010276 123 ETKAAIVEMEGIPSKARNLQMSLLMAKLY-------RNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLF 195 (514)
Q Consensus 123 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~-------~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~ 195 (514)
...++...+++......++..|...+... ...++++....+|.++++.--....
T Consensus 165 ~~~~v~~~~ekal~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t------------------- 225 (881)
T KOG0128|consen 165 ERKEVEELFEKALGDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT------------------- 225 (881)
T ss_pred chhHHHHHHHHHhcccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-------------------
Confidence 55666666666544444444444433333 3345667777777777654321111
Q ss_pred hccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH----HHHHHH--H-HHHHhCChHHH
Q 010276 196 AQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIH----ILLEMA--K-VDAIIGKNDEA 268 (514)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~la--~-~~~~~~~~~~A 268 (514)
.....|..+...-..+...-..++-+.++...+... -+.+ -+.... . ......+++.|
T Consensus 226 --------------~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a 290 (881)
T KOG0128|consen 226 --------------EGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDA 290 (881)
T ss_pred --------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHH
Confidence 011122222222333333344455556665555433 2211 111111 1 11122334444
Q ss_pred HHH-------HHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh--cChhHHHHHH
Q 010276 269 ILN-------FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER--KDERGALSYA 339 (514)
Q Consensus 269 ~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~A~~~~ 339 (514)
... +++.++..|.....|..+.......|++..-...+++++...+.++..|...+..... +-...+...+
T Consensus 291 ~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~ 370 (881)
T KOG0128|consen 291 LKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVH 370 (881)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhccccccccccccccc
Confidence 433 4444555555566777778888888988888888889888888888888888776554 4444566666
Q ss_pred HHHHHhcccCchhHHHHHHHHHhcCCh-HHHHHHHHHhHhhcC----ChHHHHHHHHHHHh-------cCCHHHHHHHHH
Q 010276 340 EKSIRIDERHIPGYIMKGNLLLSMKRP-EAAVIAFRGAQELRP----DLRSYQGLVHSYLQ-------FSKVKEALYAAR 407 (514)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~-------~~~~~~A~~~~~ 407 (514)
.+++...|.....|-..-..+.+.+.. ..-...+.+++...- +...+.....-... ...+..|...+.
T Consensus 371 ~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt 450 (881)
T KOG0128|consen 371 PRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELT 450 (881)
T ss_pred chhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH
Confidence 667776666555443322222222221 112222222222100 00000000000001 112344444444
Q ss_pred HHHhh-CCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChH-HHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276 408 EAMKA-MPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG-AALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 408 ~~~~~-~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (514)
..... .......+...|.+.....++.+.++......+.....+.. .|+....+-...|+...+..++++++....++
T Consensus 451 ~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~ 530 (881)
T KOG0128|consen 451 ELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDP 530 (881)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCc
Confidence 44433 12224556667777666657888888888877766555544 77777888888888888888888887654332
Q ss_pred ----hHHHHHHHHHHHhccHHHHHHHHHH
Q 010276 486 ----SLHVKLAQVFAATNMLQEALSHYEA 510 (514)
Q Consensus 486 ----~~~~~l~~~~~~~g~~~~A~~~~~~ 510 (514)
.++..+-..-...|.++.....-++
T Consensus 531 ~~~~ev~~~~~r~Ere~gtl~~~~~~~~~ 559 (881)
T KOG0128|consen 531 EDALEVLEFFRRFEREYGTLESFDLCPEK 559 (881)
T ss_pred hhHHHHHHHHHHHHhccccHHHHhhhHHh
Confidence 2444445555556666665554443
No 320
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.98 E-value=0.14 Score=39.15 Aligned_cols=78 Identities=18% Similarity=-0.000 Sum_probs=64.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCh
Q 010276 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (514)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (514)
.......++.+++..++..+--..|+.+++-..-|.++...|++++|+..|+...+..+..+...-.++.|+..+|+.
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 344445788888888888888889999888888899999999999999999998888777777777788888777764
No 321
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.94 E-value=0.89 Score=38.59 Aligned_cols=188 Identities=12% Similarity=0.106 Sum_probs=118.3
Q ss_pred HhcCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHhCChHHHHHHHHHHHhhC-----CCC-HHHHHHHHHHHHHh
Q 010276 227 ASNDYKGGLELFAELLQRFPNNI----HILLEMAKVDAIIGKNDEAILNFEKVRSID-----PYI-MTYMDEYAMLLKVK 296 (514)
Q Consensus 227 ~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~~~~l~~~~~~~ 296 (514)
.....++|+..|+++++..|... .++-.+..+.+++|++++-.+.|.+.+..- .+. ......+-..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34578999999999999888663 467778899999999999999988876521 111 11222222222233
Q ss_pred CChhHHHHHHHHHhhc--CCCChHHH----HHHHHHHhh-cChhHHHHHHHHHHHhccc------------CchhHHHHH
Q 010276 297 CDYSKLSKLVHDLLSI--DPSRPEVF----VALSVLWER-KDERGALSYAEKSIRIDER------------HIPGYIMKG 357 (514)
Q Consensus 297 ~~~~~A~~~~~~~~~~--~~~~~~~~----~~l~~~~~~-~~~~~A~~~~~~~~~~~~~------------~~~~~~~~~ 357 (514)
.+.+--...|+..+.. +..+...| ..+|.++.. ++|.+-.+.+.+.-..... -.+++..-.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 3344444445544432 23333344 357888777 7777666666554432211 123344455
Q ss_pred HHHHhcCChHHHHHHHHHhHhhc---CChHH----HHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 010276 358 NLLLSMKRPEAAVIAFRGAQELR---PDLRS----YQGLVHSYLQFSKVKEALYAAREAMKAMP 414 (514)
Q Consensus 358 ~~~~~~~~~~~A~~~~~~~~~~~---~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 414 (514)
.+|..+.+-..-...|++++.+. |.... .-.=|..+.+.|++++|-..|-++.+...
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence 67777788788888899988764 33321 22336778899999999999888887543
No 322
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.93 E-value=0.15 Score=38.93 Aligned_cols=73 Identities=11% Similarity=-0.040 Sum_probs=38.0
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCh
Q 010276 395 QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRN 468 (514)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 468 (514)
..++.+++...+..+--+.|+.+..-..-|.++... |++.+|+..++...+-.+..+...-.++.|+..+|+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~r-g~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIAR-GNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHc-CCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 345555555555555555555555555555555555 5555555555555544444444444455555444443
No 323
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=1.6 Score=41.49 Aligned_cols=49 Identities=22% Similarity=0.210 Sum_probs=30.7
Q ss_pred hcCHHHHHHHHHHHHHh------------CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 010276 228 SNDYKGGLELFAELLQR------------FPNNIHILLEMAKVDAIIGKNDEAILNFEKVR 276 (514)
Q Consensus 228 ~~~~~~A~~~~~~~~~~------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 276 (514)
...|++|...|.-+... .|-+.+.+..++.+...+|+.+-|....++++
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 34567777777666543 24445666666666666676666666666654
No 324
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.76 E-value=2.5 Score=42.40 Aligned_cols=314 Identities=10% Similarity=0.053 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCc
Q 010276 109 EVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATP 188 (514)
Q Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 188 (514)
.-.+.-+.-.++.|++..+......+...|-.+ +.....+....+.. ....+...++.+|+.+........
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l~d~pL~~--yl~y~~L~~~l~~~--~~~ev~~Fl~~~~~~P~~~~Lr~~----- 104 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTLKDYPLYP--YLEYRQLTQDLMNQ--PAVQVTNFIRANPTLPPARSLQSR----- 104 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhccCCCcHh--HHHHHHHHhccccC--CHHHHHHHHHHCCCCchHHHHHHH-----
Confidence 345677788888999988888877775444322 22222222222221 122455556666765544322110
Q ss_pred ccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHH
Q 010276 189 KDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEA 268 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A 268 (514)
| -..+...+++..-+..+ ...|.+.......+......|+.++|
T Consensus 105 --------------------------~------l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A 148 (644)
T PRK11619 105 --------------------------F------VNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEA 148 (644)
T ss_pred --------------------------H------HHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 0 11122345555544422 23466777777777777778887777
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhC------------------ChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-
Q 010276 269 ILNFEKVRSIDPYIMTYMDEYAMLLKVKC------------------DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER- 329 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~- 329 (514)
.....++-......+.....+-..+...| +...|..+...+ +.+... ++.....
T Consensus 149 ~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l----~~~~~~---~a~a~~al 221 (644)
T PRK11619 149 WQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQL----PADYQT---IASALIKL 221 (644)
T ss_pred HHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhc----ChhHHH---HHHHHHHH
Confidence 76666665544433433333333333333 333332222211 111000 1111111
Q ss_pred -cChhHHHHHHHHHHHhcccC-chhHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh-----HHHHHHHHHHHhcCCHHHH
Q 010276 330 -KDERGALSYAEKSIRIDERH-IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-----RSYQGLVHSYLQFSKVKEA 402 (514)
Q Consensus 330 -~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A 402 (514)
.+.......+.. ..|.. ......++..-....+.+.|...+.+.....+-. ..+..++.-....+...+|
T Consensus 222 ~~~p~~~~~~~~~---~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a 298 (644)
T PRK11619 222 QNDPNTVETFART---TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQ 298 (644)
T ss_pred HHCHHHHHHHhhc---cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHH
Confidence 222222111111 01111 0111222333334555666777766543333211 2233444333333324556
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 010276 403 LYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYL 479 (514)
Q Consensus 403 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 479 (514)
...+..+..... +....-....+.... ++++.....+...-....+.....+-+|+.+...|+.++|...|+++.
T Consensus 299 ~~w~~~~~~~~~-~~~~~e~r~r~Al~~-~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 299 AKWRDDVIMRSQ-STSLLERRVRMALGT-GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcccccC-CcHHHHHHHHHHHHc-cCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 666655443222 223333333333344 677666666655433233345566667777666777777777777763
No 325
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.65 E-value=2.8 Score=42.09 Aligned_cols=202 Identities=10% Similarity=-0.003 Sum_probs=96.9
Q ss_pred HHhCChhHHHHHHHHHhhcCCCChH----HHHHHHHHHhhcC-hhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHH
Q 010276 294 KVKCDYSKLSKLVHDLLSIDPSRPE----VFVALSVLWERKD-ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEA 368 (514)
Q Consensus 294 ~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (514)
....+.+.|...+.+.....+-+.+ ++..++.-..... .+++...+..+..... +....-....+....++++.
T Consensus 252 lar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 252 VARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHccCHHH
Confidence 3444555666666554333332222 1222222222232 4555555555432221 22223333334446666666
Q ss_pred HHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCh-H--HH-HHHHHH
Q 010276 369 AVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGR-E--KA-KKFYES 443 (514)
Q Consensus 369 A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-~--~A-~~~~~~ 443 (514)
+...+..+-....+. ...+-+|.++...|+.++|...|+++.. +.+ .|-.++.-.. |.. . .. ...-..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~~--fYG~LAa~~L---g~~~~~~~~~~~~~~~ 403 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QRG--FYPMVAAQRL---GEEYPLKIDKAPKPDS 403 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--cHHHHHHHHc---CCCCCCCCCCCCchhh
Confidence 655555542211111 4456666666667777777777777633 221 2212221111 111 0 00 000000
Q ss_pred HHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHhccHHHHHHHHH
Q 010276 444 ALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYE 509 (514)
Q Consensus 444 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 509 (514)
.+ +. ......+..+...|+...|...+..++.. .++.-...++.+....|.++.|+....
T Consensus 404 ~~---~~--~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 404 AL---TQ--GPEMARVRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred hh---cc--ChHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 00 01 12345566777888888888888877765 444556677777778888777765543
No 326
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=1.8 Score=40.89 Aligned_cols=231 Identities=12% Similarity=-0.007 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChH----HHHHHHHHHhh-cChhHHHHHHH
Q 010276 266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPE----VFVALSVLWER-KDERGALSYAE 340 (514)
Q Consensus 266 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~-~~~~~A~~~~~ 340 (514)
+...+.+.......|.++......+..+...|+.+.|+..+...++ +.-.. .++.++.++.- .+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444445555566777777777778888888887777777776665 22111 12233333333 66777777777
Q ss_pred HHHHhcccCchhHHHHH-HHHHh--------cCChHHHHHHHHHhH---hhcCCh----HHHHHHHHHHHhcCCHHHHHH
Q 010276 341 KSIRIDERHIPGYIMKG-NLLLS--------MKRPEAAVIAFRGAQ---ELRPDL----RSYQGLVHSYLQFSKVKEALY 404 (514)
Q Consensus 341 ~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~A~~~~~~~~---~~~~~~----~~~~~l~~~~~~~~~~~~A~~ 404 (514)
...+.+.-.--.|..++ -++.. .|+-+.|-..++... ...|.+ .-....+.-+...+.
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~------ 401 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP------ 401 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc------
Confidence 76665544333333333 22221 223333333333222 222222 111111222221111
Q ss_pred HHHHHHhhCCCCHH--HHHHHHHHHHhcC-CChHHHHHHHHHHHh---h-CCCChH-HHHHHHHHHHHcCChhHHHHHHH
Q 010276 405 AAREAMKAMPQSAK--ALKLVGDVHASNA-SGREKAKKFYESALR---L-EPGYLG-AALALAELHVIEGRNGDAVSLLE 476 (514)
Q Consensus 405 ~~~~~~~~~p~~~~--~~~~l~~~~~~~~-~~~~~A~~~~~~a~~---~-~~~~~~-~~~~la~~~~~~g~~~~A~~~~~ 476 (514)
.++..+. .+..++.++.... ...++.. -++...+ . ++++.- -+..+|.++..+|+...|..+|.
T Consensus 402 -------~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~ 473 (546)
T KOG3783|consen 402 -------LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFK 473 (546)
T ss_pred -------ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0111111 1222222222210 1122222 1111121 2 222222 44568999999999999999999
Q ss_pred HHHhhC---CC-----chHHHHHHHHHHHhcc-HHHHHHHHHHHh
Q 010276 477 RYLKDW---AD-----DSLHVKLAQVFAATNM-LQEALSHYEAAL 512 (514)
Q Consensus 477 ~~~~~~---~~-----~~~~~~l~~~~~~~g~-~~~A~~~~~~al 512 (514)
..++.. .+ +-+++.+|..|..+|. ..++.+++.+|-
T Consensus 474 i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr 518 (546)
T KOG3783|consen 474 IQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAR 518 (546)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 988542 11 2499999999999998 999999999874
No 327
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.62 E-value=0.58 Score=34.09 Aligned_cols=84 Identities=21% Similarity=0.134 Sum_probs=41.3
Q ss_pred HhcCChHHHHHHHHHhHhhcCC---h----------HHHHHHHHHHHhcCCHHHHHHHHHHHHh-------hCCCCHH--
Q 010276 361 LSMKRPEAAVIAFRGAQELRPD---L----------RSYQGLVHSYLQFSKVKEALYAAREAMK-------AMPQSAK-- 418 (514)
Q Consensus 361 ~~~~~~~~A~~~~~~~~~~~~~---~----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~-- 418 (514)
...|-|++|...++++.+.... . -.+-.|+..+..+|+|++++....+++. ++.+...
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence 4456666666666666654321 1 1245566666666666666655555543 2222222
Q ss_pred --HHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010276 419 --ALKLVGDVHASNASGREKAKKFYESAL 445 (514)
Q Consensus 419 --~~~~l~~~~~~~~~~~~~A~~~~~~a~ 445 (514)
+.+..+..+... |+.++|+..|+.+-
T Consensus 100 IaaVfsra~Al~~~-Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 100 IAAVFSRAVALEGL-GRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHHT-T-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CChHHHHHHHHHHH
Confidence 223444455554 55555555555543
No 328
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.66 Score=44.03 Aligned_cols=129 Identities=17% Similarity=0.133 Sum_probs=87.1
Q ss_pred hHHHHHHHHHhhcCCCChHHHHHH--HHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHH-
Q 010276 300 SKLSKLVHDLLSIDPSRPEVFVAL--SVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRG- 375 (514)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l--~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~- 375 (514)
.-++..+...+..+|.++..+... ...+.. ++...+.......+..+|.+..+..+++......|....+...+..
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~ 127 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEI 127 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 335555566666777777765443 222222 6666777788888888888888888888887777777666666555
Q ss_pred hHhhcCCh-HH------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 010276 376 AQELRPDL-RS------YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHA 428 (514)
Q Consensus 376 ~~~~~~~~-~~------~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (514)
+....|++ .. ++.++......|+..++....+++....|.++.+...+.....
T Consensus 128 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~ 187 (620)
T COG3914 128 AEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQ 187 (620)
T ss_pred HHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHH
Confidence 66667766 22 2335777777888888888888888888887665555544433
No 329
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.57 E-value=0.46 Score=39.84 Aligned_cols=34 Identities=18% Similarity=0.091 Sum_probs=22.9
Q ss_pred hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 39 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
+...+..++.+|..|...|+-+....++++|+..
T Consensus 114 ~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~ 147 (214)
T PF09986_consen 114 PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEF 147 (214)
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 4466677777788887777766666666666554
No 330
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.54 E-value=0.92 Score=36.83 Aligned_cols=103 Identities=12% Similarity=-0.037 Sum_probs=64.6
Q ss_pred ccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhH
Q 010276 139 RNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHR 218 (514)
Q Consensus 139 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (514)
.-..++..+|..|.+.|+.++|++.|.++............ ..
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id-------------------------------------~~ 76 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKID-------------------------------------MC 76 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHH-------------------------------------HH
Confidence 34567788999999999999999999997765543222221 12
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHH----HHHHHHHHHHHhCChHHHHHHHHHHHhh
Q 010276 219 YVEAQCCIASNDYKGGLELFAELLQRF--PNNIH----ILLEMAKVDAIIGKNDEAILNFEKVRSI 278 (514)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~----~~~~la~~~~~~~~~~~A~~~~~~~~~~ 278 (514)
+....+.+..+++......+.++-... +.+.+ .....|..+...++|.+|.+.|-.+...
T Consensus 77 l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 77 LNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 333666667788888877777765432 22222 2333455556667777777766665443
No 331
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=2 Score=40.80 Aligned_cols=136 Identities=18% Similarity=0.163 Sum_probs=69.5
Q ss_pred ccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh---------------------cCChH----HHHHHHHHHHhcCCHHH
Q 010276 347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL---------------------RPDLR----SYQGLVHSYLQFSKVKE 401 (514)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------------------~~~~~----~~~~l~~~~~~~~~~~~ 401 (514)
|-+.+.+..++.+...+|+.+-|....++++-. .|.+. +.+.....+.+.|-+..
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT 360 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT 360 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Confidence 444555666666666666666666655555421 11221 12223344455667777
Q ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCCChHHHHHHHHHH-----HhhCCCChHHHHHHHHHHHHcCC---hhHHH
Q 010276 402 ALYAAREAMKAMPQ-SAKALKLVGDVHASNASGREKAKKFYESA-----LRLEPGYLGAALALAELHVIEGR---NGDAV 472 (514)
Q Consensus 402 A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~~~~la~~~~~~g~---~~~A~ 472 (514)
|.++++-.++++|. +|-....+..+|.-...+|.=-+..++.. +..-|+. ..-..+|..|..... ...|.
T Consensus 361 A~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~-~yS~AlA~f~l~~~~~~~rqsa~ 439 (665)
T KOG2422|consen 361 ALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNF-GYSLALARFFLRKNEEDDRQSAL 439 (665)
T ss_pred HHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCc-hHHHHHHHHHHhcCChhhHHHHH
Confidence 77777777777776 55555555555444334444444444433 2223332 122234444444443 35566
Q ss_pred HHHHHHHhhCC
Q 010276 473 SLLERYLKDWA 483 (514)
Q Consensus 473 ~~~~~~~~~~~ 483 (514)
..+.+|+...|
T Consensus 440 ~~l~qAl~~~P 450 (665)
T KOG2422|consen 440 NALLQALKHHP 450 (665)
T ss_pred HHHHHHHHhCc
Confidence 66666666555
No 332
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.48 E-value=0.026 Score=46.11 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=39.2
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 010276 393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (514)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 451 (514)
..+.++.+.|.+.|.+++...|+....|+.+|....+. |+++.|.+.|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~eka-g~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKA-GEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhc-ccHHHHHHHHHHHHcCCccc
Confidence 44556666666777777777677666677777666665 67777777777777766655
No 333
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.21 Score=47.52 Aligned_cols=95 Identities=8% Similarity=0.036 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 010276 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNN------IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM 291 (514)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 291 (514)
++..|...++..+|..+++.|...+...|.+ ......++.||....+.|.|.++++++-+.+|.++-.......
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3566888899999999999999999877765 4566788999999999999999999999999999988888888
Q ss_pred HHHHhCChhHHHHHHHHHhhc
Q 010276 292 LLKVKCDYSKLSKLVHDLLSI 312 (514)
Q Consensus 292 ~~~~~~~~~~A~~~~~~~~~~ 312 (514)
+....|.-++|+.+.......
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhh
Confidence 899999999999988776654
No 334
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.35 E-value=0.42 Score=35.75 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCh
Q 010276 420 LKLVGDVHASNASGREKAKKFYESALRLEPGYL 452 (514)
Q Consensus 420 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 452 (514)
.+.++.-+.+. ++|+.++.+....++..|++.
T Consensus 74 lyYLAvg~yRl-keY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 74 LYYLAVGHYRL-KEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred hhhhHHHHHHH-hhHHHHHHHHHHHHhhCCCcH
Confidence 33444444444 444444444444444444443
No 335
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.25 E-value=0.036 Score=45.34 Aligned_cols=60 Identities=22% Similarity=0.205 Sum_probs=54.8
Q ss_pred HHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q 010276 358 NLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA 417 (514)
Q Consensus 358 ~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 417 (514)
....+.++.+.|.+.|.+++.+.|+. ..|+.+|....+.|+++.|...|++.++++|++.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34567889999999999999999998 7899999999999999999999999999999864
No 336
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.25 E-value=0.84 Score=34.25 Aligned_cols=77 Identities=17% Similarity=0.110 Sum_probs=58.6
Q ss_pred cHHHHHHHHHHHHHhCC---hHHHHHHHHHHHh-hCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHH
Q 010276 248 NIHILLEMAKVDAIIGK---NDEAILNFEKVRS-IDPYI-MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVA 322 (514)
Q Consensus 248 ~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 322 (514)
..+..+.+++++....+ ..+.+.+++..++ -.|.. .+..+.++..+++.++|+.++.+.+.+++..|++..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 45677888888877654 4567888888886 44433 5677888888999999999999999999999988877654
Q ss_pred HH
Q 010276 323 LS 324 (514)
Q Consensus 323 l~ 324 (514)
.-
T Consensus 111 k~ 112 (149)
T KOG3364|consen 111 KE 112 (149)
T ss_pred HH
Confidence 43
No 337
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=95.11 E-value=2.1 Score=37.40 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=23.0
Q ss_pred CchHHHHHHHHhhhhhhHHHhHHHHHHHhhccC
Q 010276 2 EVPKEQITALIDQGLYDSAQMLGCFLVSSSAIN 34 (514)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~ 34 (514)
|.+.+-+..+++.|++.++..++..++.+....
T Consensus 11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~ 43 (260)
T PF04190_consen 11 DLLYSGALILLKHGQYGSGADLALLLIEVYEKS 43 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc
Confidence 345566777888888888888888777755543
No 338
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=2.1 Score=36.85 Aligned_cols=162 Identities=14% Similarity=0.101 Sum_probs=94.2
Q ss_pred HHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhh-h
Q 010276 5 KEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST-S 83 (514)
Q Consensus 5 ~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-~ 83 (514)
++.++..+..++++.++.....++............++-.+...++..|...|++..--+.....-+.-.+....... .
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 567788899999999999888887643333333344556678889999999998765444333222111111111000 0
Q ss_pred hhhhhhccccCCCCccc--------ccccCC--------hhHHHHHHHHHHHhcCCHHHHHHHHhcC-------CCCCcc
Q 010276 84 SRSSLSTSNRSSSPNSF--------NVSAIN--------ENEVKYKIASCHFALGETKAAIVEMEGI-------PSKARN 140 (514)
Q Consensus 84 ~~~~~~~~~~~~a~~~~--------~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~-------~~~~~~ 140 (514)
.+... ..++.....+ ...++. ..+.-..++..++..|.|.+|+..+..+ ...+.-
T Consensus 87 irtLi--ekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~L 164 (421)
T COG5159 87 IRTLI--EKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINL 164 (421)
T ss_pred HHHHH--HhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccce
Confidence 00000 0111111111 001111 1233446788889999999999776543 334566
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010276 141 LQMSLLMAKLYRNSRHNRGAVACYKECL 168 (514)
Q Consensus 141 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l 168 (514)
...+..-..+|....+..++...+..+-
T Consensus 165 i~vhllESKvyh~irnv~KskaSLTaAr 192 (421)
T COG5159 165 ITVHLLESKVYHEIRNVSKSKASLTAAR 192 (421)
T ss_pred eehhhhhHHHHHHHHhhhhhhhHHHHHH
Confidence 6777888888888888888877776554
No 339
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=2.4 Score=37.48 Aligned_cols=272 Identities=15% Similarity=0.149 Sum_probs=153.8
Q ss_pred HHHHHHHHhhhhhhHHHhHHHHHHHhhc--cCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhh
Q 010276 5 KEQITALIDQGLYDSAQMLGCFLVSSSA--INGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (514)
Q Consensus 5 ~~~~~~l~~~~~~~~a~~~~~~ll~~~~--~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 82 (514)
.+.++.+...++++.++.+...++.-.. .++...-...-.+...+|+.+.+.|++.+=....+..-......+.+...
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 5677888888888888888887776311 11111223445678899999999999876655554432221111111111
Q ss_pred -----hhhhhhhc-cccCCCCccc-ccccCC--------hhHHHHHHHHHHHhcCCHHHHHHHHhcC-------CCCCcc
Q 010276 83 -----SSRSSLST-SNRSSSPNSF-NVSAIN--------ENEVKYKIASCHFALGETKAAIVEMEGI-------PSKARN 140 (514)
Q Consensus 83 -----~~~~~~~~-~~~~~a~~~~-~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~-------~~~~~~ 140 (514)
+....... ++...-.... .+..+. ...+-.++...|...++|.+|+.....+ ...+.-
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL 167 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL 167 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence 11111110 0011000000 111111 1223347788899999999999765543 233445
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhc-----CCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhH
Q 010276 141 LQMSLLMAKLYRNSRHNRGAVACYKECLRH-----CPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRW 215 (514)
Q Consensus 141 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (514)
.+++..-...|....+..+|...+..+-.. +|....+...|
T Consensus 168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDL---------------------------------- 213 (411)
T KOG1463|consen 168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDL---------------------------------- 213 (411)
T ss_pred eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHH----------------------------------
Confidence 666777788888889988888888766532 12222222211
Q ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CcHH---HHHHHHHHHHHhCChHHHHHHH--HHHHhhCCCCHHHHH
Q 010276 216 LHRYVEAQCCIASNDYKGGLELFAELLQRFP---NNIH---ILLEMAKVDAIIGKNDEAILNF--EKVRSIDPYIMTYMD 287 (514)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~---~~~~la~~~~~~~~~~~A~~~~--~~~~~~~~~~~~~~~ 287 (514)
.-|..+....+|..|..+|-++++-+. ++.. .+-.+-.|-...+..++--..+ +.+++....+.+++.
T Consensus 214 ----qSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amk 289 (411)
T KOG1463|consen 214 ----QSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMK 289 (411)
T ss_pred ----hccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHH
Confidence 124555556889999999988887432 1222 3333444445556666544443 345555666677777
Q ss_pred HHHHHHHH--hCChhHHHHHHHHHhhcCC
Q 010276 288 EYAMLLKV--KCDYSKLSKLVHDLLSIDP 314 (514)
Q Consensus 288 ~l~~~~~~--~~~~~~A~~~~~~~~~~~~ 314 (514)
..+..+.+ ..+|+.|+.-|..-+..+|
T Consensus 290 avAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 290 AVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 77777654 4567777777776665443
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.98 E-value=1.4 Score=41.83 Aligned_cols=54 Identities=11% Similarity=0.216 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010276 107 ENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC 167 (514)
Q Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 167 (514)
+++.++.| .++.|+.+.|.+..+.+ .++..|..+|.....+|+++-|..+|+++
T Consensus 320 D~~~rFeL---Al~lg~L~~A~~~a~~~----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 320 DPDHRFEL---ALQLGNLDIALEIAKEL----DDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp -HHHHHHH---HHHCT-HHHHHHHCCCC----STHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred ChHHHhHH---HHhcCCHHHHHHHHHhc----CcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 44455544 45789999999998766 47889999999999999999999999985
No 341
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.98 E-value=0.068 Score=45.92 Aligned_cols=86 Identities=13% Similarity=0.077 Sum_probs=63.2
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHhCChhHHHHHHHHHhhcCCCC
Q 010276 238 FAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE-YAMLLKVKCDYSKLSKLVHDLLSIDPSR 316 (514)
Q Consensus 238 ~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 316 (514)
|.+.....|+++..|...+......|.+.+--..|.++++..|.+++.|.. -+.-+...++++.+...+.+.+..+|.+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 334445677777777777777777777777778888888888888777766 4445666778888888888888888888
Q ss_pred hHHHHHH
Q 010276 317 PEVFVAL 323 (514)
Q Consensus 317 ~~~~~~l 323 (514)
|..|...
T Consensus 176 p~iw~ey 182 (435)
T COG5191 176 PRIWIEY 182 (435)
T ss_pred chHHHHH
Confidence 7776653
No 342
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.96 E-value=0.054 Score=31.41 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=26.9
Q ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhc
Q 010276 43 AENLIILGDSLFRDREYRRAIHTYKQALQYY 73 (514)
Q Consensus 43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 73 (514)
+.++..+|..+...|++++|+.++++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3478899999999999999999999999874
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.86 E-value=2 Score=40.70 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 010276 248 NIHILLEMAKVDAIIGKNDEAILNFEKV 275 (514)
Q Consensus 248 ~~~~~~~la~~~~~~~~~~~A~~~~~~~ 275 (514)
++..|..+|......|+++-|.++|+++
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3444444455444555554444444443
No 344
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=2.8 Score=40.08 Aligned_cols=130 Identities=18% Similarity=0.096 Sum_probs=99.3
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-cChh-HHHHH
Q 010276 263 GKNDEAILNFEKVRSIDPYIMTYMDE--YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDER-GALSY 338 (514)
Q Consensus 263 ~~~~~A~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-~A~~~ 338 (514)
|...-++..+...+.++|.++..+.. +...+...+....+.-.....+..+|.+.....+++..... |... -+...
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444777777777788888876544 46777778888889999999999999999999999987777 4444 55555
Q ss_pred HHHHHHhcccCchhHHHH------HHHHHhcCChHHHHHHHHHhHhhcCCh-HHHHHHHHH
Q 010276 339 AEKSIRIDERHIPGYIMK------GNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHS 392 (514)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~ 392 (514)
.+.+....|.+......+ +......|+..++....+++....|.+ .....+...
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 555888888887765555 888888999999999999999999987 444444333
No 345
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.76 E-value=0.063 Score=46.11 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=71.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh--cChhHHHHHHHHHHHhcccC
Q 010276 272 FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER--KDERGALSYAEKSIRIDERH 349 (514)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~A~~~~~~~~~~~~~~ 349 (514)
|.++....|.++..|...+......|.+.+.-.+|.+++..+|.+.+.|...+..-.. ++++.+...+.++++.+|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 3445556788999999999999999999999999999999999999999875443222 99999999999999999999
Q ss_pred chhHHH
Q 010276 350 IPGYIM 355 (514)
Q Consensus 350 ~~~~~~ 355 (514)
|..|..
T Consensus 176 p~iw~e 181 (435)
T COG5191 176 PRIWIE 181 (435)
T ss_pred chHHHH
Confidence 998754
No 346
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.68 E-value=0.046 Score=31.72 Aligned_cols=26 Identities=38% Similarity=0.395 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH
Q 010276 454 AALALAELHVIEGRNGDAVSLLERYL 479 (514)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~~~ 479 (514)
++.++|.+|...|++++|..++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34455555555555555555555544
No 347
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.63 E-value=1.3 Score=36.12 Aligned_cols=56 Identities=16% Similarity=0.039 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCChhHHH
Q 010276 415 QSAKALKLVGDVHASNASGREKAKKFYESALRLEPG----YLGAALALAELHVIEGRNGDAV 472 (514)
Q Consensus 415 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~ 472 (514)
+++...+.+|..|.+ .+.++++..+-+++++.+. +++++..|+.++.++|+++.|.
T Consensus 139 ~t~elq~aLAtyY~k--rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYTK--RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 346666666666664 4666677776666665332 2556666666666666666654
No 348
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=0.49 Score=45.24 Aligned_cols=91 Identities=14% Similarity=0.097 Sum_probs=52.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhhcCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 010276 355 MKGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH 427 (514)
Q Consensus 355 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (514)
+-|.-.++..+|..+++.|...+...|.+ .....+..||....+.+.|.++++++-+.+|.++-....+-.+.
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 34444555666666666666666555543 12445566666666666666666666666666655555555555
Q ss_pred HhcCCChHHHHHHHHHHHh
Q 010276 428 ASNASGREKAKKFYESALR 446 (514)
Q Consensus 428 ~~~~~~~~~A~~~~~~a~~ 446 (514)
... +.-++|+....+...
T Consensus 439 ~~E-~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 439 LAE-DKSEEALTCLQKIKS 456 (872)
T ss_pred HHh-cchHHHHHHHHHHHh
Confidence 554 566666666555444
No 349
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.41 E-value=0.25 Score=45.96 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=81.1
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 010276 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAII---GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (514)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (514)
+.-.+..+....++..|.+++...|.....+...+.++++. |+.-.|+.-...+++++|....+++.++.++...++
T Consensus 381 gnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r 460 (758)
T KOG1310|consen 381 GNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR 460 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh
Confidence 44444455678899999999999999999999999888875 566678888888999999999999999999999999
Q ss_pred hhHHHHHHHHHhhcCCCCh
Q 010276 299 YSKLSKLVHDLLSIDPSRP 317 (514)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~ 317 (514)
+.+|+++...+....|.+.
T Consensus 461 ~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 461 YLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHhhhhHHHHhhcCchhh
Confidence 9999999988888888553
No 350
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.36 E-value=0.56 Score=38.16 Aligned_cols=78 Identities=10% Similarity=0.100 Sum_probs=50.2
Q ss_pred HHHhCChhHHHHHHHHHhhc-CCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhccc----CchhHHHHHHHHHhcCChH
Q 010276 293 LKVKCDYSKLSKLVHDLLSI-DPSRPEVFVALSVLWERKDERGALSYAEKSIRIDER----HIPGYIMKGNLLLSMKRPE 367 (514)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 367 (514)
++....-+.|...|-++-.. .-++++..+.+|..|...+.++++..+.++++..+. +++++..++.++...|+++
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34443445555555444332 224577777777777777777888888887776443 3667777777777777777
Q ss_pred HHH
Q 010276 368 AAV 370 (514)
Q Consensus 368 ~A~ 370 (514)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 663
No 351
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=4 Score=37.24 Aligned_cols=127 Identities=12% Similarity=0.018 Sum_probs=99.3
Q ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCC--hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh----CChhHH
Q 010276 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGK--NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK----CDYSKL 302 (514)
Q Consensus 229 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A 302 (514)
.-.++-+.+...+++.+|++-.+|+.+..++.+.+. +..=+...+++++.+|.+..+|...=.+.... ....+=
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E 168 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE 168 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence 356777888999999999999999999999998764 57889999999999999987776554444333 234666
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHhh-------cC------hhHHHHHHHHHHHhcccCchhHHH
Q 010276 303 SKLVHDLLSIDPSRPEVFVALSVLWER-------KD------ERGALSYAEKSIRIDERHIPGYIM 355 (514)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~------~~~A~~~~~~~~~~~~~~~~~~~~ 355 (514)
+++..+++..++.+..+|.....++.. |+ ...-++....++-.+|++..+|+.
T Consensus 169 l~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 788889999999999999988877764 42 124556667788889999888765
No 352
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.28 E-value=0.16 Score=47.19 Aligned_cols=88 Identities=13% Similarity=-0.022 Sum_probs=64.9
Q ss_pred CChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh----cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHH
Q 010276 297 CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER----KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIA 372 (514)
Q Consensus 297 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 372 (514)
+....++..|.+++...|.....+.+.+.++.. |+.-.|+.-...+++++|....+++.++.++...+++.+|+.+
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 345566777777777777777777766666655 5555777777778888888888888888888888888888888
Q ss_pred HHHhHhhcCChH
Q 010276 373 FRGAQELRPDLR 384 (514)
Q Consensus 373 ~~~~~~~~~~~~ 384 (514)
...+....|.+.
T Consensus 468 ~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 468 HWALQMSFPTDV 479 (758)
T ss_pred HHHHhhcCchhh
Confidence 877777777553
No 353
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.03 E-value=0.88 Score=41.27 Aligned_cols=58 Identities=19% Similarity=0.107 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010276 387 QGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESAL 445 (514)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~ 445 (514)
..+..||.+.++.+-|+....+.+..+|....-+...|.++..+ .+|.+|-+.+--+.
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~L-eRy~eAarSamia~ 289 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRL-ERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 46788999999999999999999999999888888999998888 88888877665543
No 354
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=94.01 E-value=3.9 Score=35.75 Aligned_cols=26 Identities=12% Similarity=-0.106 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHhCChhHHHHHH
Q 010276 281 YIMTYMDEYAMLLKVKCDYSKLSKLV 306 (514)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~A~~~~ 306 (514)
.++..+..+|..+++.|++.+|..++
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 34677777777777777777776655
No 355
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.00 E-value=0.1 Score=29.36 Aligned_cols=30 Identities=23% Similarity=0.499 Sum_probs=27.6
Q ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHhhc
Q 010276 44 ENLIILGDSLFRDREYRRAIHTYKQALQYY 73 (514)
Q Consensus 44 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 73 (514)
+.+..+|.+.+..++|++|+.-|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999874
No 356
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.89 E-value=0.89 Score=47.59 Aligned_cols=158 Identities=20% Similarity=0.161 Sum_probs=106.6
Q ss_pred HHHHHHHHhcCChHHHHH------HHHHhH-hhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCH
Q 010276 354 IMKGNLLLSMKRPEAAVI------AFRGAQ-ELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA--------MPQSA 417 (514)
Q Consensus 354 ~~~~~~~~~~~~~~~A~~------~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~ 417 (514)
...|......|.+.+|.+ .+.... .+.|+. ..+..++.++...|+.++|+..-.++.-+ .|+..
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 445555566667776666 333222 234554 56788888888999998888887776532 24456
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCC-----C
Q 010276 418 KALKLVGDVHASNASGREKAKKFYESALRL--------EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA-----D 484 (514)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----~ 484 (514)
..+.+++...... ++...|...+.++..+ .|.......+++.++...++++.|+.+++.+..... .
T Consensus 1016 ~~y~nlal~~f~~-~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~ 1094 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAV-KNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPK 1094 (1236)
T ss_pred HHhhHHHHHHHhc-cCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcc
Confidence 6677777777776 7778888888777663 233334556788888888899999999998887542 2
Q ss_pred c----hHHHHHHHHHHHhccHHHHHHHHHHHh
Q 010276 485 D----SLHVKLAQVFAATNMLQEALSHYEAAL 512 (514)
Q Consensus 485 ~----~~~~~l~~~~~~~g~~~~A~~~~~~al 512 (514)
. ..+..++..+..+|++..|..+.+...
T Consensus 1095 ~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1095 ELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred chhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 1 355666777777777777776665543
No 357
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.87 E-value=5.9 Score=37.35 Aligned_cols=93 Identities=15% Similarity=0.039 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhh
Q 010276 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER 329 (514)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (514)
..+..+-.++.....+.-....+.+++... .+..++..++.+|... ..++-..++++..+.+-++...-..++..|..
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk 144 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK 144 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 344444444444444444445555555543 3445566666666655 45555666666666666666666666666666
Q ss_pred cChhHHHHHHHHHHH
Q 010276 330 KDERGALSYAEKSIR 344 (514)
Q Consensus 330 ~~~~~A~~~~~~~~~ 344 (514)
++...+..+|.+++.
T Consensus 145 ik~sk~a~~f~Ka~y 159 (711)
T COG1747 145 IKKSKAAEFFGKALY 159 (711)
T ss_pred hchhhHHHHHHHHHH
Confidence 666666666666654
No 358
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.63 E-value=4.8 Score=35.51 Aligned_cols=142 Identities=16% Similarity=0.102 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhcc-CcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHH
Q 010276 145 LLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGA-TPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQ 223 (514)
Q Consensus 145 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (514)
+.+.+...+..+..+-++.-..+++++|....++..|++-.. ...+.+..++++.+. +.
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka--------------------~e 247 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEATTIVDAERLFKQALKA--------------------GE 247 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhhHHHHHHHHHHHHHH--------------------HH
Confidence 445555667777888888889999999999999888754321 111222222222111 11
Q ss_pred HHHHh-cCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhCCh
Q 010276 224 CCIAS-NDYKGGLELFAELLQRFPNN-IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI--MTYMDEYAMLLKVKCDY 299 (514)
Q Consensus 224 ~~~~~-~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 299 (514)
..++. .+...--...+...+.+-+- ..+...++.|..++|+..+|++.++...+..|-. ...+.++...+....-|
T Consensus 248 ~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAY 327 (556)
T KOG3807|consen 248 TIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAY 327 (556)
T ss_pred HHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 11110 00000000011111111111 2344567888888888888888888877766632 12333444444444444
Q ss_pred hHHHHHH
Q 010276 300 SKLSKLV 306 (514)
Q Consensus 300 ~~A~~~~ 306 (514)
.+...++
T Consensus 328 ADvqavL 334 (556)
T KOG3807|consen 328 ADVQAVL 334 (556)
T ss_pred HHHHHHH
Confidence 4444333
No 359
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=93.60 E-value=8.8 Score=38.53 Aligned_cols=283 Identities=11% Similarity=-0.014 Sum_probs=145.3
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH----HHHHHH--H
Q 010276 225 CIASNDYKGGLELFAELLQRFPN-------NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT----YMDEYA--M 291 (514)
Q Consensus 225 ~~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~--~ 291 (514)
+...++++.....|.+++..-.. ....+...-..+...-..++-+.++...+... -+.+ .+.... .
T Consensus 200 ~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h 278 (881)
T KOG0128|consen 200 AKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAH 278 (881)
T ss_pred ccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcc
Confidence 34557788888888888763221 13344444555555555566777777766653 2211 111111 1
Q ss_pred -HHHHhCChhHHHHHH-------HHHhhcCCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHhcccCchhHHHHHHHH-H
Q 010276 292 -LLKVKCDYSKLSKLV-------HDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLL-L 361 (514)
Q Consensus 292 -~~~~~~~~~~A~~~~-------~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~ 361 (514)
......+++.+..-+ ++.+...|.....|..+...... |+...-...+++++...+.+...|...|... .
T Consensus 279 ~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~ 358 (881)
T KOG0128|consen 279 VYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDT 358 (881)
T ss_pred hHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhccc
Confidence 112233444444333 33333333333333333333333 7777777778888888887777887776554 2
Q ss_pred hcCChHHHHHHHHHhHhhcCChHHHHHHHHHHH-hcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC--------
Q 010276 362 SMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYL-QFSK-VKEALYAAREAMKAMPQSAKALKLVGDVHASNA-------- 431 (514)
Q Consensus 362 ~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-------- 431 (514)
.++-.+.+...+.+++..+|-...+...+.+-+ +.+. ...-...+.+.+.. ...+.+....+....
T Consensus 359 eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~----~~~l~~~~~~~rr~~~~~~~s~~ 434 (881)
T KOG0128|consen 359 ELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSM----TVELHNDYLAYRRRCTNIIDSQD 434 (881)
T ss_pred ccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHhhcccchhhh
Confidence 344455556667777777776533322222222 2221 11222223332221 111222222222211
Q ss_pred -----CChHHHHHHHHHHHhhC-CCChHHHHHHHHHHH-HcCChhHHHHHHHHHHhhCCCc-h-HHHHHHHHHHHhccHH
Q 010276 432 -----SGREKAKKFYESALRLE-PGYLGAALALAELHV-IEGRNGDAVSLLERYLKDWADD-S-LHVKLAQVFAATNMLQ 502 (514)
Q Consensus 432 -----~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~-~-~~~~l~~~~~~~g~~~ 502 (514)
..+..|...|....... ......+-..|.++. .+++.+.++.+++..+...... . .|+....+-...|+..
T Consensus 435 ~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~ 514 (881)
T KOG0128|consen 435 YSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGP 514 (881)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCch
Confidence 22344444444433321 111234445555554 3577888888888776655444 2 5777777777779999
Q ss_pred HHHHHHHHHh
Q 010276 503 EALSHYEAAL 512 (514)
Q Consensus 503 ~A~~~~~~al 512 (514)
.+..++++|+
T Consensus 515 ~~R~~~R~ay 524 (881)
T KOG0128|consen 515 SARKVLRKAY 524 (881)
T ss_pred hHHHHHHHHH
Confidence 9988888775
No 360
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.46 E-value=0.13 Score=26.11 Aligned_cols=21 Identities=38% Similarity=0.457 Sum_probs=9.3
Q ss_pred HHHHHHHHHHcCChhHHHHHH
Q 010276 455 ALALAELHVIEGRNGDAVSLL 475 (514)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~ 475 (514)
...+|.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 334444444444444444443
No 361
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.45 E-value=0.39 Score=34.15 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=50.2
Q ss_pred HHHhhhhhhHHHhHHHHHHHhhccCCCCC-hhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcc
Q 010276 10 ALIDQGLYDSAQMLGCFLVSSSAINGETS-PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYK 74 (514)
Q Consensus 10 ~l~~~~~~~~a~~~~~~ll~~~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 74 (514)
.-+..|+|..|.......+.......... ......+++.+|..+...|++++|+..+++++++..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34678999999888887776655444432 224456788899999999999999999999999854
No 362
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.31 E-value=0.099 Score=26.56 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=21.8
Q ss_pred HHHHHHHhhHhhhhhHHHHHHHHHH
Q 010276 44 ENLIILGDSLFRDREYRRAIHTYKQ 68 (514)
Q Consensus 44 ~~~~~~g~~~~~~g~~~~A~~~~~~ 68 (514)
.+.+.+|..+...|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4678899999999999999998763
No 363
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.20 E-value=0.62 Score=33.13 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhh
Q 010276 353 YIMKGNLLLSMKRPEAAVIAFRGAQEL 379 (514)
Q Consensus 353 ~~~~~~~~~~~~~~~~A~~~~~~~~~~ 379 (514)
...+|.++...|++++|+..+++++++
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344555555555555555555555544
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.12 E-value=0.63 Score=31.12 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=46.2
Q ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcC
Q 010276 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALG 122 (514)
Q Consensus 43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 122 (514)
+......|--++.+.+.++|+..++++++..++.+.. ..++-.+..++...|
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~r----------------------------f~~lG~l~qA~~e~G 57 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDR----------------------------FRVLGYLIQAHMEWG 57 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHH----------------------------HHHHHHHHHHHHHHH
Confidence 4456777888899999999999999999997755432 223345667888888
Q ss_pred CHHHHHHHH
Q 010276 123 ETKAAIVEM 131 (514)
Q Consensus 123 ~~~~A~~~~ 131 (514)
++++.+...
T Consensus 58 kyr~~L~fA 66 (80)
T PF10579_consen 58 KYREMLAFA 66 (80)
T ss_pred HHHHHHHHH
Confidence 888888654
No 365
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=92.98 E-value=5.6 Score=34.49 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhhCCCc-------hHHHHHHHHHHHhccHHHHHHHH
Q 010276 455 ALALAELHVIEGRNGDAVSLLERYLKDWADD-------SLHVKLAQVFAATNMLQEALSHY 508 (514)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~ 508 (514)
...+|..|+..|++++|.++|+.+....... .+...+..|+...|+.++.+...
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3445555555555555555555554433221 34555555555555555555443
No 366
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.95 E-value=3 Score=38.04 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=70.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC--------CC-----c-----HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Q 010276 220 VEAQCCIASNDYKGGLELFAELLQRF--------PN-----N-----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY 281 (514)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~-----~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 281 (514)
..|...+++++|..|..-|..+++.. |. + ..+-..+..||.++++.+-|+....+.+..+|.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 44666777777777777777776532 11 1 124456889999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHHHH
Q 010276 282 IMTYMDEYAMLLKVKCDYSKLSKLVH 307 (514)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~A~~~~~ 307 (514)
...-+...+.++..+.+|.+|.+-+-
T Consensus 261 ~frnHLrqAavfR~LeRy~eAarSam 286 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERYSEAARSAM 286 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876543
No 367
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.93 E-value=1.4 Score=46.31 Aligned_cols=128 Identities=20% Similarity=0.257 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCHHHHHH------HHHHHH-HhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhh--------CCCC
Q 010276 218 RYVEAQCCIASNDYKGGLE------LFAELL-QRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI--------DPYI 282 (514)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~------~~~~~~-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~ 282 (514)
.+..+......|.+.+|.+ ++.... ...|.....+..++.++...|+.++|+..-.++.-+ .|+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 3455667777778887777 555333 357778888889999999999999988887766543 2333
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHhhc--------CCCChHHHHHHHHHHhh-cChhHHHHHHHHHHHh
Q 010276 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSI--------DPSRPEVFVALSVLWER-KDERGALSYAEKSIRI 345 (514)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~ 345 (514)
...+..++......++...|...+.++... .|.......+++.++.. ++++.|+++.+.+...
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666555432 12222233344444333 5555666666655553
No 368
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.60 E-value=6.3 Score=34.06 Aligned_cols=211 Identities=13% Similarity=0.055 Sum_probs=113.1
Q ss_pred HHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHH
Q 010276 47 IILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKA 126 (514)
Q Consensus 47 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 126 (514)
+.+|+-..+.+++++|+..|.+.+......-+. ...........++..|...|++..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek-----------------------~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEK-----------------------TLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhh-----------------------hhhHHHHHHHHHHHHHHhcCCcch
Confidence 667888899999999999999998762110000 000234456788889988888876
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC---CCHHHHHHHHHhccCcc--cHhHHHhccCCc
Q 010276 127 AIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCP---FFIEAITALAELGATPK--DIISLFAQTPNR 201 (514)
Q Consensus 127 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~ 201 (514)
--+..... .+++... .. .+-.+..+..++..| ++.+-...+..-.+... +-...+...
T Consensus 64 l~~~i~~s------re~m~~f-----tk---~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~--- 126 (421)
T COG5159 64 LGDTITSS------REAMEDF-----TK---PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLE--- 126 (421)
T ss_pred HHHHHHhh------HHHHHHh-----cc---hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 55544332 1111100 00 111222233333332 22222222211111000 000000000
Q ss_pred CCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 010276 202 SGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR------FPNNIHILLEMAKVDAIIGKNDEAILNFEKV 275 (514)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 275 (514)
....++..++..|.|.+|+.....++.. .|.-..++..-..+|....+..++...+..+
T Consensus 127 ---------------Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaA 191 (421)
T COG5159 127 ---------------LECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred ---------------HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHH
Confidence 0123467788899999999888877642 2333567777788888888877777766655
Q ss_pred Hhh-----CCCCHHHH--HHHHHHHHHhCChhHHHHHHHHHhhc
Q 010276 276 RSI-----DPYIMTYM--DEYAMLLKVKCDYSKLSKLVHDLLSI 312 (514)
Q Consensus 276 ~~~-----~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~ 312 (514)
-.. .|....+. ..-|...+...+|.-|..+|-++++-
T Consensus 192 rt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 192 RTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred HHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 432 12222222 22255566667788888888777764
No 369
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.54 E-value=0.54 Score=26.14 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHcCChhHHHHH
Q 010276 454 AALALAELHVIEGRNGDAVSL 474 (514)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~ 474 (514)
.++.+|-.+..+|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 445555555666666666665
No 370
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.50 E-value=1.5 Score=38.14 Aligned_cols=63 Identities=21% Similarity=0.212 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhh
Q 010276 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS 311 (514)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 311 (514)
..++..++..+...|+++.+++.+++.+..+|.+...+..+...|...|+...|+..|+++-.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 457777888888888888888888888888888888888888888888888888888887755
No 371
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.48 E-value=0.23 Score=27.96 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 487 LHVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 487 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
++..||.+-...++|++|++-|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344555555555555555555555554
No 372
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.33 E-value=0.65 Score=25.83 Aligned_cols=21 Identities=38% Similarity=0.173 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhCChHHHHHH
Q 010276 251 ILLEMAKVDAIIGKNDEAILN 271 (514)
Q Consensus 251 ~~~~la~~~~~~~~~~~A~~~ 271 (514)
.++.+|-.+..+|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344455555555555555555
No 373
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.32 E-value=1.7 Score=35.77 Aligned_cols=125 Identities=14% Similarity=0.021 Sum_probs=80.4
Q ss_pred HHHHhcCCHHHHHHHHhc-CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHH---HHHHhccCcccH
Q 010276 116 SCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAIT---ALAELGATPKDI 191 (514)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~---~l~~~~~~~~~~ 191 (514)
.-+++.+...+|+...+. +..+|.+......+-+++.-.|++++|...++-+-+..|+...-.. .+..+.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e------ 82 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE------ 82 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH------
Confidence 445678889999998877 7778999999999999999999999999999999999997644332 221211
Q ss_pred hHHHhccCCcCCCCCCCcC-CchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 010276 192 ISLFAQTPNRSGRAPFDHL-DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN 248 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~ 248 (514)
++....-..+..|.... .+..|...+..+..+...|.-+.+..+-+.+++..|..
T Consensus 83 --a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 83 --AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred --HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 11111111222232222 34556665555555555555555555566666665543
No 374
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.31 E-value=1.4 Score=37.83 Aligned_cols=73 Identities=8% Similarity=-0.033 Sum_probs=58.3
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHH
Q 010276 253 LEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (514)
Q Consensus 253 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (514)
..+=..+...++++.|..+.++.+.++|.++.-+...|.+|.+.|.+.-|++.+...++..|+++.+-.....
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 3444567778888888888888888888888888888888888888888888888888888888776554443
No 375
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.21 E-value=1.5 Score=37.65 Aligned_cols=54 Identities=20% Similarity=0.083 Sum_probs=28.6
Q ss_pred CChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276 432 SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 432 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (514)
++++.|..+.++.+.++|.++.-+...|.+|.++|.+.-|++.++..++..|++
T Consensus 195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 455555555555555555555555555555555555555555555555555544
No 376
>PF12854 PPR_1: PPR repeat
Probab=92.20 E-value=0.35 Score=26.48 Aligned_cols=29 Identities=31% Similarity=0.540 Sum_probs=19.4
Q ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010276 380 RPDLRSYQGLVHSYLQFSKVKEALYAARE 408 (514)
Q Consensus 380 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (514)
.|+..+|..+...+.+.|+.++|.+.+++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 35556666777777777777777776654
No 377
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.16 E-value=11 Score=35.74 Aligned_cols=83 Identities=16% Similarity=0.028 Sum_probs=62.8
Q ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHH
Q 010276 227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLV 306 (514)
Q Consensus 227 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 306 (514)
..-.+.-...++.+++... .+-.+++.++.+|... ..++-...+++.++.+-++...-..++..|.+ ++.+.+...|
T Consensus 78 ~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f 154 (711)
T COG1747 78 DNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFF 154 (711)
T ss_pred cchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHH
Confidence 3334445556677776654 3557888899999887 66777888999999888888777888888776 8888888898
Q ss_pred HHHhhc
Q 010276 307 HDLLSI 312 (514)
Q Consensus 307 ~~~~~~ 312 (514)
.+++..
T Consensus 155 ~Ka~yr 160 (711)
T COG1747 155 GKALYR 160 (711)
T ss_pred HHHHHH
Confidence 888764
No 378
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.14 E-value=15 Score=37.19 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=50.4
Q ss_pred hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
+-..+..+....+|.-|+.++.. ...++....+.+..-|..++++|+|++|...|-+.+..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~--------~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS--------QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh--------cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 45677888899999999887762 33456677888999999999999999999999998865
No 379
>PF12854 PPR_1: PPR repeat
Probab=92.07 E-value=0.39 Score=26.29 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=20.1
Q ss_pred CCCchHHHHHHHHHHHhccHHHHHHHHHH
Q 010276 482 WADDSLHVKLAQVFAATNMLQEALSHYEA 510 (514)
Q Consensus 482 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 510 (514)
.|+...|..+...|.+.|+.++|.+.|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 35555677777777777777777777765
No 380
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.07 E-value=9 Score=35.11 Aligned_cols=157 Identities=16% Similarity=0.129 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------------hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC-
Q 010276 232 KGGLELFAELLQRFPNNIHILLEMAKVDAI------------IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD- 298 (514)
Q Consensus 232 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 298 (514)
.++++.-.+++..+|+...+|...-.++.. ..-.++-+.+...+++.+|+...+|..+..++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 467777778888888876666554333322 2245667788889999999999999999999987764
Q ss_pred -hhHHHHHHHHHhhcCCCChHHHHHHHHHHhh-----cChhHHHHHHHHHHHhcccCchhHHHHHHHHHh------cCC-
Q 010276 299 -YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-----KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS------MKR- 365 (514)
Q Consensus 299 -~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~- 365 (514)
+..=+++.+++++.+|.+...|...-.+... ....+-+++..+++..++.+..+|..+..++.. .|+
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~ 205 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNF 205 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCcc
Confidence 5778899999999999998888766555444 235577889999999999999999888777652 231
Q ss_pred -----hHHHHHHHHHhHhhcCCh-HHHHH
Q 010276 366 -----PEAAVIAFRGAQELRPDL-RSYQG 388 (514)
Q Consensus 366 -----~~~A~~~~~~~~~~~~~~-~~~~~ 388 (514)
...-+..-..++-.+|++ .+|+.
T Consensus 206 ~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 206 MPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred CCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 223344555666678887 44443
No 381
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.90 E-value=11 Score=35.47 Aligned_cols=97 Identities=12% Similarity=0.071 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 010276 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN-ASGREKAKKFYESALRLEPGYLGAALALAELHV 463 (514)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 463 (514)
.-..+...+.+.|-+.+|...|.+.....|-+...+..+..+-... .-+...+..+|..++.....+++.|...-....
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~ 541 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEEL 541 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhc
Confidence 3445566777888889999999998888887766665554443221 134677888899888877788889988888888
Q ss_pred HcCChhHHHHHHHHHHhh
Q 010276 464 IEGRNGDAVSLLERYLKD 481 (514)
Q Consensus 464 ~~g~~~~A~~~~~~~~~~ 481 (514)
..|..+.+-.++.++.+.
T Consensus 542 ~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 542 PLGRPENCGQIYWRAMKT 559 (568)
T ss_pred cCCCcccccHHHHHHHHh
Confidence 889888888888888764
No 382
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.76 E-value=2.4 Score=36.97 Aligned_cols=62 Identities=10% Similarity=0.135 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 010276 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR 446 (514)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~ 446 (514)
.++..++..+...|+++.+...+++.+..+|.+...|..+-..|... |+...|+..|++.-+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~-g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVN-GRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence 35566677777777777777777777777777777777777777776 777777777766554
No 383
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=91.17 E-value=10 Score=33.65 Aligned_cols=184 Identities=13% Similarity=0.029 Sum_probs=95.2
Q ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhCChhHHHHHHH
Q 010276 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI-MTYMDEYAMLLKVKCDYSKLSKLVH 307 (514)
Q Consensus 229 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 307 (514)
+-.++|+.+-+-+....|..|+++-.++.+.+...+... ..+++- +..+...-...+..+-.+++...+.
T Consensus 210 ~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~A---------R~~~~G~~vlL~dQDr~lW~r~lI~eg~all~ 280 (415)
T COG4941 210 DLCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPA---------RFDADGEPVLLEDQDRSLWDRALIDEGLALLD 280 (415)
T ss_pred hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhh---------ccCCCCCeeeccccchhhhhHHHHHHHHHHHH
Confidence 345677777777778888888888777776665432211 111110 1111111122334445566677777
Q ss_pred HHhhcCCCCh-HHHHHHHHHHhh------cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhc
Q 010276 308 DLLSIDPSRP-EVFVALSVLWER------KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR 380 (514)
Q Consensus 308 ~~~~~~~~~~-~~~~~l~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 380 (514)
+++.....-| ...-.++.++.. -++..-..+|+-.....|+ |.+-.+.+....+..-.+.++...+......
T Consensus 281 rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~ 359 (415)
T COG4941 281 RALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARP 359 (415)
T ss_pred HHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhccc
Confidence 7765443222 222233333332 3344444445544445554 5555566666655555666665555443321
Q ss_pred --CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 010276 381 --PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL 422 (514)
Q Consensus 381 --~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 422 (514)
..+ ..+...|..+.+.|+.++|...|++++.+.++..+..+.
T Consensus 360 ~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l 404 (415)
T COG4941 360 RLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFL 404 (415)
T ss_pred ccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHH
Confidence 111 334555666666777777777777776666655444333
No 384
>PF13041 PPR_2: PPR repeat family
Probab=91.13 E-value=1.1 Score=27.21 Aligned_cols=43 Identities=16% Similarity=0.019 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHcCChhHHHHHHHHHHhhC--CCchHHHHHHHH
Q 010276 452 LGAALALAELHVIEGRNGDAVSLLERYLKDW--ADDSLHVKLAQV 494 (514)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 494 (514)
...|..+-..+.+.|++++|.++|++..+.. |+...+..+-..
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4567777788888888888888888887754 444455444433
No 385
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=91.09 E-value=7.1 Score=36.38 Aligned_cols=61 Identities=20% Similarity=0.182 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH--HHHH--HHHHHHHhCChHHHHHHHHHHHhh
Q 010276 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIH--ILLE--MAKVDAIIGKNDEAILNFEKVRSI 278 (514)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~--la~~~~~~~~~~~A~~~~~~~~~~ 278 (514)
.+..+..++..++|..|.+.++.+...-|.+.. .+.. .|..++..-++.+|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 356688889999999999999999886454433 3333 355567788899999999988765
No 386
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=91.06 E-value=9.2 Score=32.82 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHhhcCCCC-hHHHHHHHHHHhh--cChhHHHHHHHHHHH
Q 010276 286 MDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR-PEVFVALSVLWER--KDERGALSYAEKSIR 344 (514)
Q Consensus 286 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~A~~~~~~~~~ 344 (514)
+..++.+..+.|++++...++++++..+|.- .+-...+..+|.. |....+...+.....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3445666666666666666666666654432 2333344444443 444444444444433
No 387
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.74 E-value=23 Score=36.75 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=42.0
Q ss_pred hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHH
Q 010276 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQAL 70 (514)
Q Consensus 4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 70 (514)
+-.++..++....|+.++.+++.... .++..............|-.++.+|+|++|...|.+..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~---~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDS---PNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCC---CChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 45688899999999999998775533 01111111111122222677999999999999999853
No 388
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=90.74 E-value=6.4 Score=30.45 Aligned_cols=48 Identities=13% Similarity=0.249 Sum_probs=26.0
Q ss_pred HHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHH
Q 010276 293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAE 340 (514)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~ 340 (514)
+...+.......+++.++..++.++..+..+..++..-+..+.+..+.
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~~~ll~~l~ 64 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEIERLD 64 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCHHHHHHHHH
Confidence 334456666666666666655555555555555555444444444443
No 389
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.68 E-value=2.6 Score=28.32 Aligned_cols=32 Identities=13% Similarity=0.041 Sum_probs=15.4
Q ss_pred HHhCChhHHHHHHHHHhhcCCCChHHHHHHHH
Q 010276 294 KVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (514)
Q Consensus 294 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (514)
+..++.++|+..++++++..++.++.+..+|.
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~ 48 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGY 48 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence 34444455555555555554444444444443
No 390
>PF13041 PPR_2: PPR repeat family
Probab=90.42 E-value=2.1 Score=25.85 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010276 385 SYQGLVHSYLQFSKVKEALYAAREAMK 411 (514)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (514)
+|..+...+.+.|++++|.++|+++.+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 391
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=90.26 E-value=13 Score=33.18 Aligned_cols=282 Identities=12% Similarity=0.067 Sum_probs=144.9
Q ss_pred HHHHHhhHhhhhhHHHHHHHHHHHHhh--cccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCC
Q 010276 46 LIILGDSLFRDREYRRAIHTYKQALQY--YKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGE 123 (514)
Q Consensus 46 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 123 (514)
....++......++++++..|.+.+.. .|.+.+.... ........++..+...|+
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~-----------------------~kE~~Ilel~~ll~~~~~ 63 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIK-----------------------EKEQSILELGDLLAKEGD 63 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHH-----------------------HHHHHHHHHHHHHHhccc
Confidence 366677777888899999999998874 1211111000 124456788999999999
Q ss_pred HHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC---CCCHHHHHHHHHhccC--cccHhHHHhcc
Q 010276 124 TKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHC---PFFIEAITALAELGAT--PKDIISLFAQT 198 (514)
Q Consensus 124 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~--~~~~~~~~~~~ 198 (514)
.++-...++.+.. .+...+. .+|.+..+..++.. |+.......+..-++. ..+-...+.+.
T Consensus 64 ~~~lr~li~~~Rp------f~~~v~K--------akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~ 129 (411)
T KOG1463|consen 64 AEELRDLITSLRP------FLSSVSK--------AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQS 129 (411)
T ss_pred hhHHHHHHHHHHH------HHHHhhh--------HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9888777765411 1111111 12222333332222 1222211111111100 00000011100
Q ss_pred CCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHh----CC--CcHHHHHHHHHHHHHhCChHHHHHHH
Q 010276 199 PNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR----FP--NNIHILLEMAKVDAIIGKNDEAILNF 272 (514)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~p--~~~~~~~~la~~~~~~~~~~~A~~~~ 272 (514)
..-.++..|+..++|.+|+.....++.. +. .-.+++..-..+|+...+..+|...+
T Consensus 130 ------------------Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasL 191 (411)
T KOG1463|consen 130 ------------------LEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASL 191 (411)
T ss_pred ------------------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHH
Confidence 0113367788889999999888877652 21 12456666778888888888888777
Q ss_pred HHHHhhC-----CCCHH--HHHHHHHHHHHhCChhHHHHHHHHHhhcCC---CChHHHHHHHHHHhh----cChhH--HH
Q 010276 273 EKVRSID-----PYIMT--YMDEYAMLLKVKCDYSKLSKLVHDLLSIDP---SRPEVFVALSVLWER----KDERG--AL 336 (514)
Q Consensus 273 ~~~~~~~-----~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~----~~~~~--A~ 336 (514)
..+-... |.... .-..-|.++....+|.-|..+|-++++-.. ++..+...+-..... +..++ ++
T Consensus 192 TsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~l 271 (411)
T KOG1463|consen 192 TSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAAL 271 (411)
T ss_pred HHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7664431 11111 112235555666778888888777776321 223444333322211 44432 22
Q ss_pred HHHHHHHHhcccCchhHHHHHHHHHh--cCChHHHHHHHHHhHhhcCC
Q 010276 337 SYAEKSIRIDERHIPGYIMKGNLLLS--MKRPEAAVIAFRGAQELRPD 382 (514)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~~~~~~ 382 (514)
-.-..+++....+.++....+..+.+ +.+|+.|+..|..-+..+|-
T Consensus 272 ls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 272 LSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 22233444444445555555555543 23566666666655554443
No 392
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=89.85 E-value=12 Score=35.44 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=20.0
Q ss_pred HHHHH-HHHHHHhccHHHHHHHHHHHhc
Q 010276 487 LHVKL-AQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 487 ~~~~l-~~~~~~~g~~~~A~~~~~~al~ 513 (514)
.|..| |.-|.+.|+...|..+|.+|+.
T Consensus 371 f~~vLAg~~~~~~~~~~~a~rcy~~a~~ 398 (414)
T PF12739_consen 371 FHMVLAGHRYSKAGQKKHALRCYKQALQ 398 (414)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444 6778888888888888888764
No 393
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=89.74 E-value=14 Score=32.78 Aligned_cols=192 Identities=13% Similarity=0.019 Sum_probs=100.2
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHH-HHhhcC
Q 010276 253 LEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV-LWERKD 331 (514)
Q Consensus 253 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~ 331 (514)
+.+.+..++..+..+-++.-..+++++|....++..++.- ...-..+|.++++++++.... .+...+ +...|.
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~----~yr~sqq~qh~~~ 261 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGET----IYRQSQQCQHQSP 261 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHH----HHhhHHHHhhhcc
Confidence 3445555666667777777777777777777666665542 122345566666666553211 111111 111121
Q ss_pred hhHHHHHHHHHHHhcccCch--hHHHHHHHHHhcCChHHHHHHHHHhHhhcCCh---HHHHHHHHHHHhcCCHHHHHHHH
Q 010276 332 ERGALSYAEKSIRIDERHIP--GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKVKEALYAA 406 (514)
Q Consensus 332 ~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~ 406 (514)
..+|. .+. ..+.. +-..++.+..++|+..+|++.++...+..|-. ...-++...+....-|.+....+
T Consensus 262 ~~da~------~rR-Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 262 QHEAQ------LRR-DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred chhhh------hhc-ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 111 11222 23468888899999999999999888777743 34455666655555454444443
Q ss_pred HHHHhh-CCCCHHHHHHHHHHH-------------HhcCCC---hHHHHHHHHHHHhhCCCChHHHHHH
Q 010276 407 REAMKA-MPQSAKALKLVGDVH-------------ASNASG---REKAKKFYESALRLEPGYLGAALAL 458 (514)
Q Consensus 407 ~~~~~~-~p~~~~~~~~l~~~~-------------~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~l 458 (514)
-+.-++ .|.+...-+.-+..- .+. |- -..|++...++++.+|.-|..+..+
T Consensus 335 akYDdislPkSA~icYTaALLK~RAVa~kFspd~asrR-GLS~AE~~AvEAihRAvEFNPHVPkYLLE~ 402 (556)
T KOG3807|consen 335 AKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRR-GLSTAEINAVEAIHRAVEFNPHVPKYLLEM 402 (556)
T ss_pred HhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhc-cccHHHHHHHHHHHHHhhcCCCCcHHHHHH
Confidence 333222 133332222211111 111 11 1356777888888888876655443
No 394
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=89.58 E-value=0.81 Score=42.17 Aligned_cols=59 Identities=19% Similarity=0.212 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCC---------CccHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010276 111 KYKIASCHFALGETKAAIVEMEGIPSK---------ARNLQMSLLMAKLYRNSRHNRGAVACYKECLR 169 (514)
Q Consensus 111 ~~~la~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 169 (514)
...+.+++.-+|+|..|++.++.+... +-....++..|-+|+..++|.+|++.|..++-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778889999999999999987332 23556779999999999999999999999873
No 395
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.44 E-value=0.9 Score=26.63 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276 455 ALALAELHVIEGRNGDAVSLLERYLKD 481 (514)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (514)
.+.||..|..+|+.+.|.+.++.++..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 357899999999999999999998853
No 396
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=89.20 E-value=1 Score=23.96 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=25.8
Q ss_pred CChhhHHHHHHHHHhcCCCCHHHHHHHHHh
Q 010276 155 RHNRGAVACYKECLRHCPFFIEAITALAEL 184 (514)
Q Consensus 155 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 184 (514)
|+.+.|...|++++...|.+...|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567899999999999999999999877543
No 397
>PRK12798 chemotaxis protein; Reviewed
Probab=88.74 E-value=20 Score=33.24 Aligned_cols=90 Identities=9% Similarity=0.086 Sum_probs=49.7
Q ss_pred hhhhhhccccCCCCccc-ccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC--CccHHHHHHHHH-HHHhcCChhh
Q 010276 84 SRSSLSTSNRSSSPNSF-NVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSK--ARNLQMSLLMAK-LYRNSRHNRG 159 (514)
Q Consensus 84 ~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~-~~~~~g~~~~ 159 (514)
+.+|..+|+-+.....+ ......+.+....-|..-+-.|+-.++.+.+..+... |.....+..|.. ......+..+
T Consensus 87 a~iy~lSGGnP~vlr~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~ 166 (421)
T PRK12798 87 ALIYLLSGGNPATLRKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPAT 166 (421)
T ss_pred HHhhHhcCCCHHHHHHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHH
Confidence 44555555554444433 2222234455555555555677777777777776333 444444444433 2334556777
Q ss_pred HHHHHHHHHhcCCC
Q 010276 160 AVACYKECLRHCPF 173 (514)
Q Consensus 160 A~~~~~~~l~~~p~ 173 (514)
|+..|+.+-=..|.
T Consensus 167 Al~~lD~aRLlaPG 180 (421)
T PRK12798 167 ALKLLDQARLLAPG 180 (421)
T ss_pred HHHHHHHHHHhCCc
Confidence 77777777666664
No 398
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.44 E-value=0.87 Score=26.70 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhc
Q 010276 488 HVKLAQVFAATNMLQEALSHYEAALR 513 (514)
Q Consensus 488 ~~~l~~~~~~~g~~~~A~~~~~~al~ 513 (514)
.+.+|..|..+|+.+.|.+.++.++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36789999999999999999998763
No 399
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.21 E-value=12 Score=32.99 Aligned_cols=100 Identities=16% Similarity=0.123 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhcCCCCC--c------cHHHHHHHHHHHHhcCChhhHHHHHHHHH--hcCCCCHHH
Q 010276 108 NEVKYKIASCHFALGETKAAIVEMEGIPSKA--R------NLQMSLLMAKLYRNSRHNRGAVACYKECL--RHCPFFIEA 177 (514)
Q Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~ 177 (514)
..++..+|.+|.+.++++.|-..+..++... . ....+..+|++|...++..+|..+..++- ..+..|...
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Confidence 4467899999999999999999999986542 1 12345778999999999999998887753 223344444
Q ss_pred HHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 010276 178 ITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQ 243 (514)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 243 (514)
...+--| .|+++-..++|-+|...|.++..
T Consensus 183 qie~kvc------------------------------------~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 183 QIEYKVC------------------------------------YARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433222 27777777888888777776643
No 400
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=88.13 E-value=1.8 Score=22.94 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHH
Q 010276 399 VKEALYAAREAMKAMPQSAKALKL 422 (514)
Q Consensus 399 ~~~A~~~~~~~~~~~p~~~~~~~~ 422 (514)
.+.+...|++++...|.++.+|..
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHH
Confidence 344444444444444444444433
No 401
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=88.12 E-value=19 Score=32.18 Aligned_cols=86 Identities=12% Similarity=0.004 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 010276 366 PEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKA--MPQSAKALKLVGDVHASNASGREKAKKFYES 443 (514)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 443 (514)
|..-..+|.-.....|+..+-.+.+.......-.+.++...+..... -......+...|..+.+. |+.++|...|++
T Consensus 312 W~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rL-gr~~eAr~aydr 390 (415)
T COG4941 312 WPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARL-GRVEEARAAYDR 390 (415)
T ss_pred hHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHh-CChHHHHHHHHH
Confidence 44444444444444444433333333333333333444433333322 112223334444444444 444555555555
Q ss_pred HHhhCCCCh
Q 010276 444 ALRLEPGYL 452 (514)
Q Consensus 444 a~~~~~~~~ 452 (514)
++.+.++..
T Consensus 391 Ai~La~~~a 399 (415)
T COG4941 391 AIALARNAA 399 (415)
T ss_pred HHHhcCChH
Confidence 544444433
No 402
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=87.66 E-value=17 Score=31.21 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhhcCC
Q 010276 354 IMKGNLLLSMKRPEAAVIAFRGAQELRPD 382 (514)
Q Consensus 354 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 382 (514)
..++.+....|+|++.+.++++++..+|+
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 34455555556666666666665555544
No 403
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.31 E-value=4 Score=40.29 Aligned_cols=114 Identities=19% Similarity=0.157 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCCh------HHHHHHHHHHhh----cChhHHHHHHHHHHHh-cccCch
Q 010276 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP------EVFVALSVLWER----KDERGALSYAEKSIRI-DERHIP 351 (514)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~A~~~~~~~~~~-~~~~~~ 351 (514)
++....+-..|....+|+.-+++.+.+-.+ |+.. .+.+..+-.+.+ |+-++|+...-.+++. .|-.++
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 445555555666666666666655544332 2211 111111212222 6666777666666654 334455
Q ss_pred hHHHHHHHHHh---------cCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcC
Q 010276 352 GYIMKGNLLLS---------MKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFS 397 (514)
Q Consensus 352 ~~~~~~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 397 (514)
.+...|.+|.. .+..+.|+..|+++++..|...+-.+++.++...|
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhh
Confidence 55555555532 34456677777777777776655455555555444
No 404
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.91 E-value=6.9 Score=33.93 Aligned_cols=84 Identities=14% Similarity=-0.023 Sum_probs=62.3
Q ss_pred hcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC------hHHHHHHHHHH
Q 010276 395 QFSKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALAELH 462 (514)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~ 462 (514)
........++.+.++....... ..+...+|..|... |++++|.++|+.+....... ..+...+..|.
T Consensus 150 ~~~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~-g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca 228 (247)
T PF11817_consen 150 GVDHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRL-GDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECA 228 (247)
T ss_pred ccchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 3445567788889888765432 34557899999998 99999999999997653322 34677788899
Q ss_pred HHcCChhHHHHHHHHHH
Q 010276 463 VIEGRNGDAVSLLERYL 479 (514)
Q Consensus 463 ~~~g~~~~A~~~~~~~~ 479 (514)
...|+.+..+.+.-+.+
T Consensus 229 ~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 229 KRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 99999988877665543
No 405
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=86.85 E-value=2.9 Score=37.06 Aligned_cols=61 Identities=16% Similarity=0.081 Sum_probs=36.7
Q ss_pred HHHHHHHhHhhcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 010276 369 AVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS 429 (514)
Q Consensus 369 A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 429 (514)
|..+|.+|..+.|+. ..|+.+|.++...|+.-.|+-+|-+++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 456667777777766 6667777777666776666666666665443335566666655554
No 406
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.84 E-value=3.6 Score=35.66 Aligned_cols=58 Identities=21% Similarity=0.117 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 010276 252 LLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL 309 (514)
Q Consensus 252 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 309 (514)
+...+..|...|.+.+|+++.++++..+|-+...+..+..++...|+--.+.+.|++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444566667777777777777777777777777777777777777766666655544
No 407
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=86.11 E-value=14 Score=28.57 Aligned_cols=37 Identities=11% Similarity=-0.041 Sum_probs=21.4
Q ss_pred HHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 010276 260 AIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (514)
Q Consensus 260 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (514)
...+.....+.+++.++..++.++.....+..++...
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 3445566666666666666555555555555555543
No 408
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=85.80 E-value=21 Score=33.32 Aligned_cols=58 Identities=19% Similarity=0.067 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHhhcCCh-H--HHHHH--HHHHHhcCCHHHHHHHHHHHHh
Q 010276 354 IMKGNLLLSMKRPEAAVIAFRGAQELRPDL-R--SYQGL--VHSYLQFSKVKEALYAAREAMK 411 (514)
Q Consensus 354 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~--~~~~l--~~~~~~~~~~~~A~~~~~~~~~ 411 (514)
...+..++..++|..|...++.....-|.. . .+..+ |..+...-++.+|.+.++..+.
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345555667777777777777766642222 2 23333 3333455566666666666554
No 409
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.40 E-value=7.4 Score=32.29 Aligned_cols=62 Identities=10% Similarity=0.135 Sum_probs=54.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q 010276 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM 283 (514)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 283 (514)
...+++.+...+++...+.-++..|.+......+-..+.-.|+|++|...++-+-++.|+..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 44567788999999999999999999988888889999999999999999999999988763
No 410
>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8). This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex
Probab=85.18 E-value=2.9 Score=32.38 Aligned_cols=67 Identities=28% Similarity=0.366 Sum_probs=50.5
Q ss_pred hHHHHHHHHhhhhhhHHHhHHHHHHHhhccCC--------------CCC---h-----hhhHHHHHHHHhhHhhhhhHHH
Q 010276 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAING--------------ETS---P-----HLKAENLIILGDSLFRDREYRR 61 (514)
Q Consensus 4 ~~~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~--------------~~~---~-----~~~~~~~~~~g~~~~~~g~~~~ 61 (514)
+...+..+-..|++.++.+.+++|..++.... ... + ...-...+.+|..||..++|++
T Consensus 13 L~~a~~~~s~RgL~~saKWaaElL~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~yllAksyFD~kEy~R 92 (142)
T PF04049_consen 13 LRQAIRECSERGLYQSAKWAAELLNGLPPPWRDDTPDDPSSSPSSSQLSPSSPSEDQLESKEYDKYLLAKSYFDCKEYDR 92 (142)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHcCCCCcccccccccccCCCccccCCCChhhhhhhhhHHHHHHHHHHHhchhHHHH
Confidence 55667788899999999999999988872111 000 0 1122467889999999999999
Q ss_pred HHHHHHHHH
Q 010276 62 AIHTYKQAL 70 (514)
Q Consensus 62 A~~~~~~al 70 (514)
|..+++...
T Consensus 93 aA~~L~~~~ 101 (142)
T PF04049_consen 93 AAHVLKDCK 101 (142)
T ss_pred HHHHHccCC
Confidence 999998865
No 411
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.01 E-value=5.5 Score=34.58 Aligned_cols=55 Identities=22% Similarity=0.190 Sum_probs=30.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHH
Q 010276 423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY 478 (514)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 478 (514)
.+..|... |.+.+|+.+.++++.++|-+...+..+-.++...|+--.|.+.|++.
T Consensus 285 va~~yle~-g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEA-GKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHc-CChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34444444 55555555555555555555555555555555555555555554443
No 412
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.85 E-value=11 Score=36.43 Aligned_cols=50 Identities=10% Similarity=-0.021 Sum_probs=41.5
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010276 116 SCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLR 169 (514)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 169 (514)
.+.++.|+++.|.++..+. ++..-|-.||.+....|++..|.++|.++-.
T Consensus 645 elal~lgrl~iA~~la~e~----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA----NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3445789999998887654 5677899999999999999999999998754
No 413
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.58 E-value=48 Score=33.47 Aligned_cols=150 Identities=16% Similarity=0.120 Sum_probs=55.3
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHH---Hhh--
Q 010276 255 MAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVL---WER-- 329 (514)
Q Consensus 255 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~---~~~-- 329 (514)
.-.++.-.|+++.|+.++-+ .+.+..--.-+|.++...|-.......-...+...+.++.. .+++.+ |..
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHHHH
Confidence 34677788999999998877 22222212223333333333322222224555555554332 333332 222
Q ss_pred --cChhHHHHHHHHHHHhc-ccCch-hHHHHHHHHHhcCC--------------hHHHHHHHHHhHhhcCCh----HHHH
Q 010276 330 --KDERGALSYAEKSIRID-ERHIP-GYIMKGNLLLSMKR--------------PEAAVIAFRGAQELRPDL----RSYQ 387 (514)
Q Consensus 330 --~~~~~A~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~----~~~~ 387 (514)
.+..+|++++--+-... |.... .+..+..+....++ ....++-..+.+...... ....
T Consensus 339 ~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~ 418 (613)
T PF04097_consen 339 EITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIE 418 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHH
Confidence 56667777765432221 11111 11222222222222 222233323333333221 2345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 010276 388 GLVHSYLQFSKVKEALYAAREA 409 (514)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~ 409 (514)
..|.-....|++++|+.+|.-+
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La 440 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLA 440 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 5566667777777777776644
No 414
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=83.87 E-value=38 Score=31.71 Aligned_cols=58 Identities=12% Similarity=0.089 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhH-------hhcCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010276 354 IMKGNLLLSMKRPEAAVIAFRGAQ-------ELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMK 411 (514)
Q Consensus 354 ~~~~~~~~~~~~~~~A~~~~~~~~-------~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (514)
..+.+++.-.|+|..|++.++..- ..-|.. ..++.+|-+|..+++|.+|+..|..++-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777788888877765431 111221 3577788888888888888888877664
No 415
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=83.32 E-value=2.3 Score=22.13 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 010276 386 YQGLVHSYLQFSKVKEALYAAREAM 410 (514)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (514)
|..+...|.+.|++++|...+++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3444555555555555555555543
No 416
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=82.90 E-value=6 Score=35.05 Aligned_cols=61 Identities=10% Similarity=0.182 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 010276 234 GLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLK 294 (514)
Q Consensus 234 A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 294 (514)
|..+|.++....|++...+..+|.++...|+.-.|+-+|-+++-.....+.+..++...+.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~ 61 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFE 61 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555554432222334444444333
No 417
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.59 E-value=61 Score=33.14 Aligned_cols=204 Identities=13% Similarity=0.033 Sum_probs=102.1
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhc-CCCCHHHHHHHHHhccCcccHhH
Q 010276 116 SCHFALGETKAAIVEMEGIPSKAR-NLQMSLLMAKLYRNSRHNRGAVACYKECLRH-CPFFIEAITALAELGATPKDIIS 193 (514)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~~~~~~ 193 (514)
..+.+..-|+-|+.+.+.-...+. ....+...|..++..|++++|...|-+.+.. +|... ... +.....+.+
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~V-i~k-----fLdaq~Ikn 415 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEV-IKK-----FLDAQRIKN 415 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHH-HHH-----hcCHHHHHH
Confidence 445567778999999887544433 4556677899999999999999999998854 33211 110 011111111
Q ss_pred HHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHhCChHHHHHH
Q 010276 194 LFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHI--LLEMAKVDAIIGKNDEAILN 271 (514)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--~~~la~~~~~~~~~~~A~~~ 271 (514)
....+..+..... ...++. .++-.+|.+.++.++-.+..+ ..+..... .-..-.++.+.+-.++|.-.
T Consensus 416 Lt~YLe~L~~~gl---a~~dht---tlLLncYiKlkd~~kL~efI~----~~~~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 416 LTSYLEALHKKGL---ANSDHT---TLLLNCYIKLKDVEKLTEFIS----KCDKGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHccc---ccchhH---HHHHHHHHHhcchHHHHHHHh----cCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 1111111110000 001111 123455666666555433333 22211000 01112233333444444333
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHhhcCCCC-hHHHHHHHHHHhhcChhHHHHHHHHHHHh
Q 010276 272 FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR-PEVFVALSVLWERKDERGALSYAEKSIRI 345 (514)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~A~~~~~~~~~~ 345 (514)
-.+.- .+.. .+-.++...+++++|++++..+ .|.. .......|..+....+++-...+-+.+..
T Consensus 486 A~k~~----~he~---vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h~P~~t~~ili~~~t~ 550 (933)
T KOG2114|consen 486 ATKFK----KHEW---VLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEHDPEETMKILIELITE 550 (933)
T ss_pred HHHhc----cCHH---HHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence 32221 1221 2334566788999999887653 2222 23445567777777777777777666653
No 418
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=81.27 E-value=45 Score=30.79 Aligned_cols=98 Identities=11% Similarity=0.010 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh-----CC-CcHHHHHHHHHHHHHhCChHHHHHHHHHHHh--hCCC--CHHHHHH
Q 010276 219 YVEAQCCIASNDYKGGLELFAELLQR-----FP-NNIHILLEMAKVDAIIGKNDEAILNFEKVRS--IDPY--IMTYMDE 288 (514)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~--~~~~~~~ 288 (514)
+....++-..|+...-...+...+.. +. ........+-+.|...+.|+.|.....+..- ...+ ....++.
T Consensus 173 fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY 252 (493)
T KOG2581|consen 173 FYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYY 252 (493)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHH
Confidence 33455555556655555555444431 11 1133445556666667777777666665531 1111 1345566
Q ss_pred HHHHHHHhCChhHHHHHHHHHhhcCCCC
Q 010276 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSR 316 (514)
Q Consensus 289 l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 316 (514)
+|.+..-+++|..|.+++-+++...|.+
T Consensus 253 ~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 253 LGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 6777777777777777777777777764
No 419
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=80.67 E-value=3 Score=21.71 Aligned_cols=26 Identities=12% Similarity=0.042 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHh
Q 010276 144 SLLMAKLYRNSRHNRGAVACYKECLR 169 (514)
Q Consensus 144 ~~~l~~~~~~~g~~~~A~~~~~~~l~ 169 (514)
|..+-..|.+.|++++|.+.|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45556667777777777777776654
No 420
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=80.60 E-value=54 Score=31.21 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 010276 219 YVEAQCCIASNDYKGGLELFAELLQRFPNN 248 (514)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~ 248 (514)
..+|...+..|+|+-|...|+.+.+...++
T Consensus 212 R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D 241 (414)
T PF12739_consen 212 RRLADLAFMLRDYELAYSTYRLLKKDFKND 241 (414)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHhhc
Confidence 456999999999999999999988755433
No 421
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=80.52 E-value=5.3 Score=21.44 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=18.4
Q ss_pred ChhHHHHHHHHHHhhCCCchHHHHHHH
Q 010276 467 RNGDAVSLLERYLKDWADDSLHVKLAQ 493 (514)
Q Consensus 467 ~~~~A~~~~~~~~~~~~~~~~~~~l~~ 493 (514)
.++.|..+|++.+...|+...|...|.
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 456777777777777777666666554
No 422
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=78.36 E-value=33 Score=36.42 Aligned_cols=18 Identities=6% Similarity=0.045 Sum_probs=11.9
Q ss_pred HHhcCCHHHHHHHHhcCC
Q 010276 118 HFALGETKAAIVEMEGIP 135 (514)
Q Consensus 118 ~~~~g~~~~A~~~~~~~~ 135 (514)
...+.++++=+..++++.
T Consensus 861 q~SqkDPkEyLP~L~el~ 878 (1265)
T KOG1920|consen 861 QKSQKDPKEYLPFLNELK 878 (1265)
T ss_pred HHhccChHHHHHHHHHHh
Confidence 345677777777777664
No 423
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=77.97 E-value=5.9 Score=21.11 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010276 386 YQGLVHSYLQFSKVKEALYAAREAMK 411 (514)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (514)
|..+...|.+.|++++|...|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555666666666666666666544
No 424
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=77.91 E-value=59 Score=30.16 Aligned_cols=55 Identities=18% Similarity=0.111 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----HHHHH--HHHHHHHHhCChHHHHHHHHH
Q 010276 220 VEAQCCIASNDYKGGLELFAELLQRFPNN-----IHILL--EMAKVDAIIGKNDEAILNFEK 274 (514)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~--~la~~~~~~~~~~~A~~~~~~ 274 (514)
..+..+++.++|..|...|+++....+.. ...+. ..|..++..-++++|.+.+++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 45678899999999999999999875422 22333 335556678889999999986
No 425
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=76.89 E-value=6.1 Score=26.73 Aligned_cols=32 Identities=16% Similarity=0.358 Sum_probs=26.5
Q ss_pred hhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 41 LKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 41 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
..+..+...|...-+.|+|++|+.+|.++++.
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34456777888889999999999999999876
No 426
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.84 E-value=6.5 Score=32.54 Aligned_cols=52 Identities=21% Similarity=0.167 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCch
Q 010276 434 REKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS 486 (514)
Q Consensus 434 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 486 (514)
.+..++..++.++..|+ +.++..++.++...|+.++|.....++....|.+.
T Consensus 127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~ 178 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPADE 178 (193)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHH
Confidence 45566677777777775 78899999999999999999999999999999543
No 427
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=76.72 E-value=6 Score=26.47 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=23.5
Q ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 43 AENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
+..+...|-.+-+.|++.+|+.+|+++++.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 445667778888889999888888888765
No 428
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=76.12 E-value=0.85 Score=44.55 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHhcCCCC----CccHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010276 107 ENEVKYKIASCHFALGETKAAIVEMEGIPSK----ARNLQMSLLMAKLYRNSRHNRGAVACYKE 166 (514)
Q Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 166 (514)
....++.-+..++..|++..|..++..+... ..........+++....|++++|+..+..
T Consensus 23 ~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~ 86 (536)
T PF04348_consen 23 RAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNA 86 (536)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhcc
Confidence 3455667778888999999999999887532 23445557778888999999999988875
No 429
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.68 E-value=85 Score=30.85 Aligned_cols=100 Identities=13% Similarity=0.045 Sum_probs=60.8
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHh
Q 010276 117 CHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFA 196 (514)
Q Consensus 117 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 196 (514)
.....|+++.|...+..+++. .....+..+..+|-.++| ++..|+...-
T Consensus 595 t~vmrrd~~~a~~vLp~I~k~-----~rt~va~Fle~~g~~e~A-------L~~s~D~d~r------------------- 643 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIPKE-----IRTKVAHFLESQGMKEQA-------LELSTDPDQR------------------- 643 (794)
T ss_pred HHhhhccccccccccccCchh-----hhhhHHhHhhhccchHhh-------hhcCCChhhh-------------------
Confidence 555678888888877766532 233445555666655554 4444432211
Q ss_pred ccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 010276 197 QTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVR 276 (514)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 276 (514)
-.+..+.|+++.|.++..++ ++..-|..+|......+++..|.++|.++.
T Consensus 644 -------------------------Felal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 644 -------------------------FELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred -------------------------hhhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 11223457777776665544 455667777888888888888888877764
Q ss_pred h
Q 010276 277 S 277 (514)
Q Consensus 277 ~ 277 (514)
.
T Consensus 694 d 694 (794)
T KOG0276|consen 694 D 694 (794)
T ss_pred c
Confidence 4
No 430
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=75.64 E-value=41 Score=27.20 Aligned_cols=182 Identities=15% Similarity=0.041 Sum_probs=99.4
Q ss_pred CCChHHHHHHHHHHhh--cChhHHHHHHHHHHHhcccCchhHHHHHHHHH-----hcCChHHHHHHHHHhHhhcCChHHH
Q 010276 314 PSRPEVFVALSVLWER--KDERGALSYAEKSIRIDERHIPGYIMKGNLLL-----SMKRPEAAVIAFRGAQELRPDLRSY 386 (514)
Q Consensus 314 ~~~~~~~~~l~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~A~~~~~~~~~~~~~~~~~ 386 (514)
...|+....|+..+.. .++++|..+|..--..+. .+...+.+|..++ ..+++..|++.+..+-..+ ...+-
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n-~~~aC 108 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDAN-IPQAC 108 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccC-CHHHH
Confidence 4568888888887766 888888888876554332 3555566665443 2346778888888776532 12445
Q ss_pred HHHHHHHHhc-----C--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC--CChHHHHH
Q 010276 387 QGLVHSYLQF-----S--KVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEP--GYLGAALA 457 (514)
Q Consensus 387 ~~l~~~~~~~-----~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~ 457 (514)
..+|.++..- + +..+|.+++.++-.. ++..+-+++...+..- .++ +....| ..|...
T Consensus 109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g---~~k-------~~t~ap~~g~p~~~-- 174 (248)
T KOG4014|consen 109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDL--EDGEACFLLSTMYMGG---KEK-------FKTNAPGEGKPLDR-- 174 (248)
T ss_pred hhhhhhhccCcCCccCCCCcHHHHHHHHHhccC--CCchHHHHHHHHHhcc---chh-------hcccCCCCCCCcch--
Confidence 5555555432 2 366788888887654 3455666666666532 111 111123 112111
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHh----ccHHHHHHHHHHHhc
Q 010276 458 LAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAAT----NMLQEALSHYEAALR 513 (514)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~ 513 (514)
+..+.-..+.+.|.++--++-++.. ..+.-++.+.|..- .+.++|..+=.+|.+
T Consensus 175 -~~~~~~~kDMdka~qfa~kACel~~-~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e 232 (248)
T KOG4014|consen 175 -AELGSLSKDMDKALQFAIKACELDI-PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKE 232 (248)
T ss_pred -hhhhhhhHhHHHHHHHHHHHHhcCC-hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHH
Confidence 2222333456666666666655531 12334444444321 245666666555544
No 431
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.60 E-value=20 Score=31.03 Aligned_cols=125 Identities=15% Similarity=0.094 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh--CChHHHHHHHHHHHhhCCCCHHHHHHHHHHH------HHhCChhHH
Q 010276 231 YKGGLELFAELLQRFPNNIHILLEMAKVDAII--GKNDEAILNFEKVRSIDPYIMTYMDEYAMLL------KVKCDYSKL 302 (514)
Q Consensus 231 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~A 302 (514)
.+.-+..+..+++.+|.+-.+|...-.++... .++..-....++.++.||.|...|...-.+. ....++..-
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 34556678888899999988888887777665 5677777888889999998876665443333 333344444
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHhh----cC------hhHHHHHHHHHHHhcccCchhHHH
Q 010276 303 SKLVHDLLSIDPSRPEVFVALSVLWER----KD------ERGALSYAEKSIRIDERHIPGYIM 355 (514)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~------~~~A~~~~~~~~~~~~~~~~~~~~ 355 (514)
.++-..++..++.++.+|...-..... |+ +++-+++.-..+-.+|++..+|..
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y 232 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGY 232 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhH
Confidence 556666777788888887765332221 22 234444555555566766666543
No 432
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=75.55 E-value=4.7 Score=36.02 Aligned_cols=63 Identities=19% Similarity=0.091 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCc
Q 010276 422 LVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (514)
Q Consensus 422 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (514)
+++.+-... +.+..|+..-..+++.++....+++..+..+....++++|++.++.+....|++
T Consensus 280 n~~~~~lk~-~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d 342 (372)
T KOG0546|consen 280 NLAAVGLKV-KGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPND 342 (372)
T ss_pred chHHhcccc-cCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcch
Confidence 345555554 555555555555555555555566666666666666666666666666666655
No 433
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=75.52 E-value=12 Score=28.97 Aligned_cols=42 Identities=29% Similarity=0.310 Sum_probs=25.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC
Q 010276 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG 263 (514)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~ 263 (514)
+...+..|++.-|.++.+.++..+|++..+...++.++..+|
T Consensus 77 A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 77 AQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 555566666666666666666666666666666666665554
No 434
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=74.17 E-value=8 Score=20.56 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhh
Q 010276 455 ALALAELHVIEGRNGDAVSLLERYLKD 481 (514)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (514)
|..+-..+.+.|++++|.+.|.+..+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 445666677777777777777766543
No 435
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=73.82 E-value=11 Score=19.95 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010276 386 YQGLVHSYLQFSKVKEALYAAREAMK 411 (514)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (514)
|..+..++.+.|+++.|..+++...+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555556666666666666655543
No 436
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=73.70 E-value=8.3 Score=25.35 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=24.3
Q ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 44 ENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 44 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
..+...|...-+.|+|++|+.+|.+++..
T Consensus 6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 6 IELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35566778888899999999999999876
No 437
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=73.66 E-value=35 Score=26.47 Aligned_cols=47 Identities=15% Similarity=0.008 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 010276 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN 430 (514)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 430 (514)
+.....+...+..|++.-|.++...++..+|++..+....+.++..+
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l 117 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL 117 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 34455555566677777777777777777777777776666666655
No 438
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.14 E-value=1.1e+02 Score=30.98 Aligned_cols=152 Identities=13% Similarity=0.059 Sum_probs=61.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH---H---H
Q 010276 355 MKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDV---H---A 428 (514)
Q Consensus 355 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~---~---~ 428 (514)
..-.++.-.|+|+.|+.++-+ ....+-+.+++.++..+...=+...... ...+...|.++.. .+++.+ | +
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~-~~~~~~dAVH~AIaL~~~gLL~~~~~~~--~~lls~~~~~~~~-ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR-NEFNRVDAVHFAIALAYYGLLRVSDSSS--APLLSVDPGDPPP-LNFARLIGQYTRSF 338 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT---T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHh-hccCcccHHHHHHHHHHcCCCCCCCccc--cceeeecCCCCCC-cCHHHHHHHHHHHH
Confidence 345667788999999998877 1112222445555555443222221111 4555555544322 222222 1 2
Q ss_pred hcCCChHHHHHHHHHHHhh-CCCChH-HHHHHHHHHHHcCCh--------------hHHHHHHHHHHhhCCCc----hHH
Q 010276 429 SNASGREKAKKFYESALRL-EPGYLG-AALALAELHVIEGRN--------------GDAVSLLERYLKDWADD----SLH 488 (514)
Q Consensus 429 ~~~~~~~~A~~~~~~a~~~-~~~~~~-~~~~la~~~~~~g~~--------------~~A~~~~~~~~~~~~~~----~~~ 488 (514)
.. .+..+|..+|--.-.. +|+... .+..+..+....+++ .-.++-..+.+...... .+.
T Consensus 339 ~~-td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~ 417 (613)
T PF04097_consen 339 EI-TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREII 417 (613)
T ss_dssp TT-T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHH
T ss_pred hc-cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHH
Confidence 23 5777888877543322 222222 222344444333322 22222222233333222 355
Q ss_pred HHHHHHHHHhccHHHHHHHHHHH
Q 010276 489 VKLAQVFAATNMLQEALSHYEAA 511 (514)
Q Consensus 489 ~~l~~~~~~~g~~~~A~~~~~~a 511 (514)
...|.-....|++++|+..|.-|
T Consensus 418 ~~~A~~~e~~g~~~dAi~Ly~La 440 (613)
T PF04097_consen 418 EQAAREAEERGRFEDAILLYHLA 440 (613)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 56677777788888888877654
No 439
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=72.94 E-value=39 Score=25.62 Aligned_cols=78 Identities=10% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCc
Q 010276 63 IHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI---PSKAR 139 (514)
Q Consensus 63 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~---~~~~~ 139 (514)
...+++++...++++.. .+..-++.+-..|...-+ ++..+++.+ .....
T Consensus 46 ~~lLer~~~~f~~~~~Y--------------------------~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~ 97 (126)
T PF08311_consen 46 LELLERCIRKFKDDERY--------------------------KNDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTK 97 (126)
T ss_dssp HHHHHHHHHHHTTSGGG--------------------------TT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHhhhHhh--------------------------cCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHH
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010276 140 NLQMSLLMAKLYRNSRHNRGAVACYKECL 168 (514)
Q Consensus 140 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 168 (514)
.+..|...|..+...|++.+|.++|+.++
T Consensus 98 ~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 98 LALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp BHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhhC
No 440
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.69 E-value=1.3e+02 Score=31.60 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHhCCh--hHHHHHHHHHhhcCCC
Q 010276 251 ILLEMAKVDAIIGKNDEAILNFEKVRSID----PYIMTYMDEYAMLLKVKCDY--SKLSKLVHDLLSIDPS 315 (514)
Q Consensus 251 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~ 315 (514)
-+..++..|...|+.++|++.+.+....+ +.....+-.....+...+.. +-..++-.-.+..+|.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~ 576 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPE 576 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCch
Confidence 34567778888888888888888877632 23333444444444444444 4444444444444443
No 441
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.51 E-value=8.6 Score=25.89 Aligned_cols=31 Identities=26% Similarity=0.295 Sum_probs=26.2
Q ss_pred hHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 42 KAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 42 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
.+..+...|-..-+.|+|++|+.+|..+++.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3446677888888999999999999999986
No 442
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.09 E-value=8.1 Score=25.90 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=8.9
Q ss_pred CChHHHHHHHHHHHh
Q 010276 432 SGREKAKKFYESALR 446 (514)
Q Consensus 432 ~~~~~A~~~~~~a~~ 446 (514)
|++++|+.+|..+++
T Consensus 20 gny~eA~~lY~~ale 34 (75)
T cd02680 20 GNAEEAIELYTEAVE 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 556666666655554
No 443
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.74 E-value=18 Score=29.93 Aligned_cols=44 Identities=20% Similarity=0.117 Sum_probs=23.3
Q ss_pred HHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 010276 371 IAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMP 414 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 414 (514)
+..++.+...|+...+..++.++...|+.++|....+++....|
T Consensus 132 ~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 132 EWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33344444445555555555555555555555555555555555
No 444
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=70.76 E-value=56 Score=28.64 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 010276 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHC 171 (514)
Q Consensus 121 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 171 (514)
...++++++..+.........+++..+|..|.+.++.+.+.+...+.++..
T Consensus 95 i~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a 145 (412)
T COG5187 95 IEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDA 145 (412)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 344555555555443334567889999999999999999999988877543
No 445
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=70.76 E-value=9.8 Score=25.83 Aligned_cols=15 Identities=33% Similarity=0.569 Sum_probs=8.5
Q ss_pred CChHHHHHHHHHHHh
Q 010276 432 SGREKAKKFYESALR 446 (514)
Q Consensus 432 ~~~~~A~~~~~~a~~ 446 (514)
|+.++|+.+|++++.
T Consensus 22 g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 22 GDKEQALAHYRKGLR 36 (79)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555554
No 446
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=69.26 E-value=86 Score=28.15 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=41.2
Q ss_pred HHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 010276 118 HFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHC 171 (514)
Q Consensus 118 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 171 (514)
-.+..+.+++++-.++-.....-.+++...|..|.+.|+.+.|.+.+++..+..
T Consensus 81 eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~kt 134 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKT 134 (393)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 344556667776666654445678889999999999999999999998876543
No 447
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.91 E-value=11 Score=25.45 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=7.6
Q ss_pred CChHHHHHHHHHHHh
Q 010276 432 SGREKAKKFYESALR 446 (514)
Q Consensus 432 ~~~~~A~~~~~~a~~ 446 (514)
|++++|+.+|..+++
T Consensus 20 g~y~eA~~~Y~~aie 34 (76)
T cd02681 20 GRYSEAVFYYKEAAQ 34 (76)
T ss_pred cCHHHHHHHHHHHHH
Confidence 555555555554443
No 448
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=68.00 E-value=10 Score=24.94 Aligned_cols=14 Identities=29% Similarity=0.517 Sum_probs=7.2
Q ss_pred CChHHHHHHHHHHH
Q 010276 432 SGREKAKKFYESAL 445 (514)
Q Consensus 432 ~~~~~A~~~~~~a~ 445 (514)
|++++|+.+|.+++
T Consensus 19 g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 19 GNYEEALELYKEAI 32 (69)
T ss_dssp TSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554443
No 449
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=67.53 E-value=36 Score=25.39 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=26.1
Q ss_pred HHHHHHhhHhhhhhHHHHHHHHHHHHhhc
Q 010276 45 NLIILGDSLFRDREYRRAIHTYKQALQYY 73 (514)
Q Consensus 45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 73 (514)
-+.++|+..++.+++-.++-.|++|+...
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~s 31 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLS 31 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999873
No 450
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=66.97 E-value=88 Score=27.39 Aligned_cols=141 Identities=9% Similarity=0.028 Sum_probs=76.6
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHhh---cChhHHHHHHHHHHHhcccCchhHHHHHHHH------HhcCChHHHHHH
Q 010276 302 LSKLVHDLLSIDPSRPEVFVALSVLWER---KDERGALSYAEKSIRIDERHIPGYIMKGNLL------LSMKRPEAAVIA 372 (514)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~A~~~ 372 (514)
-...+..++.-+|.+-.+|...-.++.. .++..-....++.++.++.+...|..+-.+. .....+..-.++
T Consensus 93 eld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~ey 172 (328)
T COG5536 93 ELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEY 172 (328)
T ss_pred HHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHh
Confidence 3444566666677776666666555554 4455666666777777777666554333222 222333333444
Q ss_pred HHHhHhhcCCh-HHHHHH---HHHHHhcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCChHHHH
Q 010276 373 FRGAQELRPDL-RSYQGL---VHSYLQFSK------VKEALYAAREAMKAMPQSAKALKLVGDVHAS----NASGREKAK 438 (514)
Q Consensus 373 ~~~~~~~~~~~-~~~~~l---~~~~~~~~~------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~A~ 438 (514)
-..++..++.+ .+|... ....+..|+ +++-+++.-..+-.+|++..+|..+-.+... . -.+.+-+
T Consensus 173 tt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~~~~d~-~~~~e~v 251 (328)
T COG5536 173 TTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSEFATDI-VMIGEKV 251 (328)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhccchHHH-HHHHHHH
Confidence 45556666665 455433 222233333 3445555666666788888777665544332 1 2345555
Q ss_pred HHHHH
Q 010276 439 KFYES 443 (514)
Q Consensus 439 ~~~~~ 443 (514)
+.+.+
T Consensus 252 ~~L~k 256 (328)
T COG5536 252 EDLGK 256 (328)
T ss_pred HHHHh
Confidence 55544
No 451
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=66.41 E-value=14 Score=24.76 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=24.9
Q ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHhhc
Q 010276 43 AENLIILGDSLFRDREYRRAIHTYKQALQYY 73 (514)
Q Consensus 43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 73 (514)
+..+...|..--..|+|++|+.+|.++++..
T Consensus 6 ai~Lv~~A~~eD~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 6 AHFLVTQAFDEDEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHhhHhhhHHHHHHHHHHHHHHH
Confidence 3445666677778899999999999999874
No 452
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=64.00 E-value=1.1e+02 Score=27.49 Aligned_cols=162 Identities=18% Similarity=0.150 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHH----HhcCCCCHHHHHHH
Q 010276 107 ENEVKYKIASCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC----LRHCPFFIEAITAL 181 (514)
Q Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----l~~~p~~~~~~~~l 181 (514)
+.+..-.+-..+ ..+++.+.++.+++ +...|--.+..+..+.+..+.| ++.+......- +...|.-
T Consensus 99 ~ad~~~~~~~~~-~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L------- 169 (301)
T TIGR03362 99 PADRVADYQELL-AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGL------- 169 (301)
T ss_pred CHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcCh-------
Confidence 334444443444 67788888888887 3446888889999999999999 45555554433 3444431
Q ss_pred HHhccCcc------cHhHHHhccCCcCC---CCC-CCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---
Q 010276 182 AELGATPK------DIISLFAQTPNRSG---RAP-FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN--- 248 (514)
Q Consensus 182 ~~~~~~~~------~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--- 248 (514)
..+.+..+ ....-+........ ..+ ........|......+......+..+.|+..++..+...++.
T Consensus 170 ~~L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~r 249 (301)
T TIGR03362 170 LELKFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRER 249 (301)
T ss_pred hhcccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHH
Confidence 11111111 11111111100000 000 000111224444455666777777777777777654432221
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 010276 249 IHILLEMAKVDAIIGKNDEAILNFEKVRS 277 (514)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 277 (514)
....+.+++++...|..+-|...+....+
T Consensus 250 f~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 250 FHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33445567777777777777777776654
No 453
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=63.16 E-value=3.8e+02 Score=33.33 Aligned_cols=143 Identities=15% Similarity=0.096 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHhhcCCh--HHH---HHHHHHHHhcC-CHHHHHHHHHHHH-hhCC--CCHHHHHHH
Q 010276 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL--RSY---QGLVHSYLQFS-KVKEALYAAREAM-KAMP--QSAKALKLV 423 (514)
Q Consensus 353 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~---~~l~~~~~~~~-~~~~A~~~~~~~~-~~~p--~~~~~~~~l 423 (514)
....|.+....|-++.++..+.+...+..-. ++. ..-+.+|.... ....+++..+..- ...+ ..+..+...
T Consensus 2739 in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lk 2818 (3550)
T KOG0889|consen 2739 INRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLK 2818 (3550)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhh
Confidence 3445556666666776666666665442111 222 22344444433 3344444433221 1111 125667778
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc----CC----hhHHHHHHHHHHhhCCCchHHHHHHHHH
Q 010276 424 GDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE----GR----NGDAVSLLERYLKDWADDSLHVKLAQVF 495 (514)
Q Consensus 424 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~----g~----~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 495 (514)
|....+. |+.++|-..|..|++++...+.+|..-|...... +. -..|+.+|-++.....+..+.-.++.+.
T Consensus 2819 G~f~~kL-~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaRk~iakvL 2897 (3550)
T KOG0889|consen 2819 GMFLEKL-GKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKARKLIAKVL 2897 (3550)
T ss_pred hHHHHHh-cCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence 8888888 9999999999999998888788888777665432 22 2356666666666555554555555544
Q ss_pred H
Q 010276 496 A 496 (514)
Q Consensus 496 ~ 496 (514)
.
T Consensus 2898 w 2898 (3550)
T KOG0889|consen 2898 W 2898 (3550)
T ss_pred H
Confidence 4
No 454
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.44 E-value=2.3e+02 Score=30.65 Aligned_cols=214 Identities=14% Similarity=0.104 Sum_probs=117.8
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC--CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhH
Q 010276 116 SCHFALGETKAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIIS 193 (514)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~ 193 (514)
++++-..++..-..++.-.... -..+...+.+|.+|...|+.-+|+.+|.++..-..... ++..+......
T Consensus 893 e~lfg~cqy~~lqdy~~llh~wc~vlk~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~-aL~~lv~~~~p------ 965 (1480)
T KOG4521|consen 893 ERLFGQCQYKVLQDYLNLLHSWCRVLKPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGN-ALRKLVYFLLP------ 965 (1480)
T ss_pred hhhhcchhHHHHHHHHHHhhhhhhhhHHHHHHhhheeeecCCchHHHHHHHHHHhhccccHH-HHHHHHHHhcC------
Confidence 3444444555555555543222 24566678999999999999999999999987655433 44433222111
Q ss_pred HHhccCCcCCCCCCCcC-CchhHHhHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhCChHH
Q 010276 194 LFAQTPNRSGRAPFDHL-DSSRWLHRYVEAQCC-IASNDYKGGLELFAELLQRFPNN----IHILLEMAKVDAIIGKNDE 267 (514)
Q Consensus 194 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~ 267 (514)
....-..+... .+.....+|..+.-. ...+-.+.+.++...+++.-|++ +.....+-.-+...|.+-+
T Consensus 966 ------~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~q 1039 (1480)
T KOG4521|consen 966 ------KRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQ 1039 (1480)
T ss_pred ------CCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHH
Confidence 00000011111 111224555555444 45577888888888888865543 3344445555667788777
Q ss_pred HHHHHHHHHhhCCCC---HHHHHHHHHHHHHhCChhHH------------HH-HHHHHhhcCCCChHHHHHHHHHHhh--
Q 010276 268 AILNFEKVRSIDPYI---MTYMDEYAMLLKVKCDYSKL------------SK-LVHDLLSIDPSRPEVFVALSVLWER-- 329 (514)
Q Consensus 268 A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A------------~~-~~~~~~~~~~~~~~~~~~l~~~~~~-- 329 (514)
|.+.+- .+|+. ...+..+..+++..|.++.- .. +++.+-...|....-++.+-.++..
T Consensus 1040 Ay~ai~----~npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~R 1115 (1480)
T KOG4521|consen 1040 AYKAIL----RNPDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVAR 1115 (1480)
T ss_pred HHHHHH----cCCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhh
Confidence 765433 34553 34666777778887776432 33 3344444444433333333333332
Q ss_pred cChhH-HHHHHHHHHHhc
Q 010276 330 KDERG-ALSYAEKSIRID 346 (514)
Q Consensus 330 ~~~~~-A~~~~~~~~~~~ 346 (514)
+++.+ |-..|+.+..+.
T Consensus 1116 hN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1116 HNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred cchhHHHHHHHHHHHHhc
Confidence 77764 445666666554
No 455
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=62.07 E-value=17 Score=24.56 Aligned_cols=14 Identities=14% Similarity=0.238 Sum_probs=6.9
Q ss_pred CChHHHHHHHHHHH
Q 010276 432 SGREKAKKFYESAL 445 (514)
Q Consensus 432 ~~~~~A~~~~~~a~ 445 (514)
|++++|+.+|.+++
T Consensus 20 g~y~eAl~~Y~~ai 33 (77)
T cd02683 20 GRFQEALVCYQEGI 33 (77)
T ss_pred ccHHHHHHHHHHHH
Confidence 55555555544443
No 456
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=61.59 E-value=21 Score=30.30 Aligned_cols=103 Identities=13% Similarity=0.036 Sum_probs=55.9
Q ss_pred hHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHH--HHH
Q 010276 52 SLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKA--AIV 129 (514)
Q Consensus 52 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~ 129 (514)
-.+..|+|+.|++....||+.+-.-|+.+..-..+.+ .+-...-+......|..-+ -..
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v-------------------aeev~~~A~~~~~ag~~~e~~~~~ 152 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV-------------------AEEVANAALKAASAGESVEPYFLR 152 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH-------------------HHHHHHHHHHHHHcCCCCChHHHH
Confidence 3477899999999999999986444432221111111 1111122222333333210 111
Q ss_pred HHhcCC---CCCcc--HHHHHHHHHHHH---------hcCChhhHHHHHHHHHhcCCC
Q 010276 130 EMEGIP---SKARN--LQMSLLMAKLYR---------NSRHNRGAVACYKECLRHCPF 173 (514)
Q Consensus 130 ~~~~~~---~~~~~--~~~~~~l~~~~~---------~~g~~~~A~~~~~~~l~~~p~ 173 (514)
.+..+. .-|+. ...+-..|..+. ..++...|+..+++++.++|.
T Consensus 153 ~~~~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 153 VFLDLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 222221 11433 344556677663 456778999999999999985
No 457
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=61.03 E-value=62 Score=31.93 Aligned_cols=77 Identities=13% Similarity=0.037 Sum_probs=37.5
Q ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHH
Q 010276 229 NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVH 307 (514)
Q Consensus 229 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 307 (514)
...+.+....+.-+.....+....+..+..+-..+..+.|-.+|++.+..+|+ ..++..+.-+.+.|-...|...++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 22 KKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 33444444444433333333344444455555555555555555555555555 344455555555555555554444
No 458
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=60.96 E-value=14 Score=27.67 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=27.2
Q ss_pred HHHHHhhHhhhhhHHHHHHHHHHHHhhcccCc
Q 010276 46 LIILGDSLFRDREYRRAIHTYKQALQYYKIVP 77 (514)
Q Consensus 46 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 77 (514)
...+|+.+..+|++++|...|-+|+..+|...
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 35689999999999999999999999988543
No 459
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=60.02 E-value=64 Score=24.12 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHh
Q 010276 454 AALALAELHVIEGRNGDAVSLLERYLK 480 (514)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (514)
...+||..+..+|+.+=.+++++-+-+
T Consensus 52 sCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 52 SCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 456788888888988888888876544
No 460
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=59.90 E-value=9.9 Score=34.09 Aligned_cols=72 Identities=14% Similarity=0.100 Sum_probs=52.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 010276 221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAML 292 (514)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 292 (514)
.+.+-+..+.+..|+.....++..++....+++..+..+....++++|++.++.+....|.+......+...
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred hHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 366666777777777777777777777777888888888888888888888888888888776555444433
No 461
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.87 E-value=38 Score=24.07 Aligned_cols=53 Identities=23% Similarity=0.107 Sum_probs=41.4
Q ss_pred HHHhcCCCC--CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHH
Q 010276 129 VEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITAL 181 (514)
Q Consensus 129 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 181 (514)
+.++++... +-.|-.+..+|.+|.+.|+.+.|.+.|+.--...|.+......|
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFL 112 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFL 112 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHH
Confidence 455555322 55677788999999999999999999999999999877666544
No 462
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=58.95 E-value=24 Score=23.70 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=24.3
Q ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 43 AENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
+..++..|...-..|+|++|..+|..+++.
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345566777777889999999999999886
No 463
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=58.80 E-value=22 Score=23.88 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=24.4
Q ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 43 AENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
+..+...|...-..|+|++|+.+|.++++.
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345566777788899999999999999876
No 464
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=58.36 E-value=1.2e+02 Score=26.18 Aligned_cols=160 Identities=19% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhh-CC--CCHHHHHHHHHHHHH-hCChhHHHHHHHHHhhc-CCCChHHHHHHHHH
Q 010276 252 LLEMAKVDAIIGKNDEAILNFEKVRSI-DP--YIMTYMDEYAMLLKV-KCDYSKLSKLVHDLLSI-DPSRPEVFVALSVL 326 (514)
Q Consensus 252 ~~~la~~~~~~~~~~~A~~~~~~~~~~-~~--~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~ 326 (514)
+..+|.+..+.++|++.+.+.+++++. +| -+.+-...+..+|-. .|....+.+.+..+-.. ..........+..-
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~~~~ 83 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVASIKE 83 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHHHHH
Q ss_pred Hhh-------cChhHHHHHHHHHHHhcccCchh----HHHHHHHHHhcCChH----------HHHHHHHHhHh-----hc
Q 010276 327 WER-------KDERGALSYAEKSIRIDERHIPG----YIMKGNLLLSMKRPE----------AAVIAFRGAQE-----LR 380 (514)
Q Consensus 327 ~~~-------~~~~~A~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----------~A~~~~~~~~~-----~~ 380 (514)
|.. .--.+.+..++..+--...++.. +...|..|...-.+. .|...|+.+.+ +.
T Consensus 84 yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~ 163 (244)
T smart00101 84 YRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELP 163 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCC
Q ss_pred CChHHHHHHH-----HHHHhcCCHHHHHHHHHHHHh
Q 010276 381 PDLRSYQGLV-----HSYLQFSKVKEALYAAREAMK 411 (514)
Q Consensus 381 ~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~~~~ 411 (514)
|.++....++ ..|.-.++.++|..+.++++.
T Consensus 164 pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 164 PTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 465
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=57.91 E-value=48 Score=25.84 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=33.8
Q ss_pred CCCCChhhhHHHH----HHHHhhHhhhh-hHHHHHHHHHHHHhhcccCc
Q 010276 34 NGETSPHLKAENL----IILGDSLFRDR-EYRRAIHTYKQALQYYKIVP 77 (514)
Q Consensus 34 ~~~~~~~~~~~~~----~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~ 77 (514)
.+..++....+.+ ..+|+.+...| +..+|...|-+|+..+|.-.
T Consensus 77 ~p~p~d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~ 125 (148)
T TIGR00985 77 APDPTDPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQ 125 (148)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHH
Confidence 3444455555555 46899999999 99999999999999998543
No 466
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=57.39 E-value=25 Score=23.64 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=23.9
Q ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 43 AENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
+..+...|...-..|++++|+.+|.++++.
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344566777777889999999999999876
No 467
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=57.09 E-value=1.1e+02 Score=25.01 Aligned_cols=79 Identities=13% Similarity=0.009 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHHHH-hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-----hCChhHHHHHHHHHhhcCCCChHHHH
Q 010276 248 NIHILLEMAKVDAI-IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV-----KCDYSKLSKLVHDLLSIDPSRPEVFV 321 (514)
Q Consensus 248 ~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~ 321 (514)
.|+....++..+.- ..++++|..+|..--..+ ..+...+.+|..+.. .++...|++.+..+-. .+.+.+..
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~ 109 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACR 109 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHh
Confidence 45555555554432 245555555555433322 123334444433322 2344555555554443 34455555
Q ss_pred HHHHHHhh
Q 010276 322 ALSVLWER 329 (514)
Q Consensus 322 ~l~~~~~~ 329 (514)
.+|.+...
T Consensus 110 ~~gLl~~~ 117 (248)
T KOG4014|consen 110 YLGLLHWN 117 (248)
T ss_pred hhhhhhcc
Confidence 55554443
No 468
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=56.61 E-value=75 Score=31.40 Aligned_cols=54 Identities=6% Similarity=-0.101 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 010276 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYE 442 (514)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 442 (514)
.+..+..+...+..++|-.+|++.+..+|+ ..++..+.-+.+. |-...|...++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~ 98 (578)
T PRK15490 45 MLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNT-GLAKDAQLILK 98 (578)
T ss_pred HHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhh-hhhhHHHHHHH
Confidence 444556666666666666666666666666 4445555555555 55555555554
No 469
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=56.28 E-value=31 Score=18.98 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHhh
Q 010276 58 EYRRAIHTYKQALQY 72 (514)
Q Consensus 58 ~~~~A~~~~~~al~~ 72 (514)
|+++|+.+|+++.+.
T Consensus 23 d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 23 DYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHc
Confidence 789999999998764
No 470
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=56.27 E-value=1.4e+02 Score=26.33 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCh
Q 010276 434 REKAKKFYESALRLEPGYLGAALALAELHVIEGRN 468 (514)
Q Consensus 434 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 468 (514)
.+.|...+.+++.++|....+...+..+-...|.+
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 35667777777777777776666666665554443
No 471
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=56.20 E-value=1.5e+02 Score=26.32 Aligned_cols=135 Identities=13% Similarity=0.009 Sum_probs=68.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHH---HHHhCChH----HHHHHHHHHHhhCCCCHHHHHHHHHH
Q 010276 222 AQCCIASNDYKGGLELFAELLQRFPN--NIHILLEMAKV---DAIIGKND----EAILNFEKVRSIDPYIMTYMDEYAML 292 (514)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~---~~~~~~~~----~A~~~~~~~~~~~~~~~~~~~~l~~~ 292 (514)
...++..++|++=...+.+......+ ..+..+..+.. ........ .-...++.=++..|++..++..+|..
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 66777888888888888877653222 11111222211 11221111 23444555556677777777776666
Q ss_pred HHHhCChhHHHHHHHHHhhcCCCChHHHHHHHHHHhhcChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChH
Q 010276 293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE 367 (514)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (514)
+....---.....- +.-...-|.... .-.+.|...+.+++.++|....+...+-.+-...|.++
T Consensus 87 ~~~~Aw~~RG~~~A------~~V~~~~W~~~~-----~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 87 WVHRAWDIRGSGYA------STVTEAQWLGAH-----QACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHccchh------cccCHHHHHHHH-----HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 55422100000000 000112221111 12356777788888888887777777777666666654
No 472
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=56.19 E-value=27 Score=23.50 Aligned_cols=30 Identities=27% Similarity=0.273 Sum_probs=24.9
Q ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 43 AENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 43 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
+..++..|...-..|+|++|+.+|.++++.
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 445666777788899999999999999886
No 473
>PF13934 ELYS: Nuclear pore complex assembly
Probab=54.75 E-value=1.1e+02 Score=26.18 Aligned_cols=88 Identities=9% Similarity=-0.065 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCc
Q 010276 109 EVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATP 188 (514)
Q Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 188 (514)
-.....|..++..+++++|+..+......|..+ ..+..++...|+...|+.+++. .+-.+.+.++...+... ...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~~~~---~~Il~~L~~~~~~~lAL~y~~~-~~p~l~s~~~~~~~~~~-La~ 153 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHPSLIPWFP---DKILQALLRRGDPKLALRYLRA-VGPPLSSPEALTLYFVA-LAN 153 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCCCCCcccH---HHHHHHHHHCCChhHHHHHHHh-cCCCCCCHHHHHHHHHH-HHc
Confidence 344445555555666666666664432212111 2233334445666655555544 22233333333332222 333
Q ss_pred ccHhHHHhccCCc
Q 010276 189 KDIISLFAQTPNR 201 (514)
Q Consensus 189 ~~~~~~~~~~~~~ 201 (514)
+.+.+++......
T Consensus 154 ~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 154 GLVTEAFSFQRSY 166 (226)
T ss_pred CCHHHHHHHHHhC
Confidence 4444544444433
No 474
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=54.66 E-value=27 Score=23.50 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=7.5
Q ss_pred CChHHHHHHHHHHHh
Q 010276 432 SGREKAKKFYESALR 446 (514)
Q Consensus 432 ~~~~~A~~~~~~a~~ 446 (514)
|++++|..+|..+++
T Consensus 20 g~y~eA~~lY~~ale 34 (75)
T cd02684 20 GDAAAALSLYCSALQ 34 (75)
T ss_pred ccHHHHHHHHHHHHH
Confidence 555555555544443
No 475
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=53.84 E-value=29 Score=23.22 Aligned_cols=28 Identities=36% Similarity=0.493 Sum_probs=22.5
Q ss_pred HHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 45 NLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 45 ~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
.+...|...-..|+|++|+.+|..+++.
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455666677789999999999999876
No 476
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=53.79 E-value=75 Score=29.93 Aligned_cols=187 Identities=12% Similarity=0.019 Sum_probs=94.1
Q ss_pred hhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhhhhhhccc----c--CCCCcccccccCChhHHHHHH
Q 010276 41 LKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSN----R--SSSPNSFNVSAINENEVKYKI 114 (514)
Q Consensus 41 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~----~--~~a~~~~~~~~~~~~~~~~~l 114 (514)
......+.-|...+..+++.+++..++++|+..-...+ ..+.|...-.+ . ......+......-..-+...
T Consensus 29 ~p~~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~---~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~ 105 (471)
T KOG4459|consen 29 VPHELAYSHGLESYEEENWPEAVRFLERALRLFRALRD---SEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLER 105 (471)
T ss_pred CCHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhh---hHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHH
Confidence 34566778899999999999999999999986321110 01112211111 0 000010000000011122233
Q ss_pred HHHHHhcCCHHHHHHHH-hcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhH
Q 010276 115 ASCHFALGETKAAIVEM-EGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIIS 193 (514)
Q Consensus 115 a~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~ 193 (514)
+.|..+...---+...= .....+-..-..+..+-.+|.+.|+..+|++.-...+-.+|++..+...+.......+....
T Consensus 106 a~Cl~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s~d 185 (471)
T KOG4459|consen 106 AACLRRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVSED 185 (471)
T ss_pred HHHHHHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCCcc
Confidence 33332211110000000 00000001113456677889999999999999999999999998888776333211111111
Q ss_pred HHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHHhcCHHHHHHHHHHHH
Q 010276 194 LFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELL 242 (514)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 242 (514)
.+. ..........|.++......+++..+...++.++
T Consensus 186 ~l~------------DlE~~~~~~~Fir~v~~y~~~d~~~~v~~ve~AL 222 (471)
T KOG4459|consen 186 ELT------------DLERREHEQWFIRGVRLYSGEDPRQCVPEVELAL 222 (471)
T ss_pred ccc------------ccccchHHHHHHHHhhhccccCchhcchhHHHHH
Confidence 110 1123344455666766677777777666555554
No 477
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=53.47 E-value=30 Score=23.21 Aligned_cols=14 Identities=36% Similarity=0.584 Sum_probs=7.1
Q ss_pred CChHHHHHHHHHHH
Q 010276 432 SGREKAKKFYESAL 445 (514)
Q Consensus 432 ~~~~~A~~~~~~a~ 445 (514)
|++++|+.+|.+++
T Consensus 20 g~y~eA~~~Y~~ai 33 (75)
T cd02678 20 GNYEEALRLYQHAL 33 (75)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554443
No 478
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=53.01 E-value=82 Score=23.01 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC
Q 010276 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG 263 (514)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~ 263 (514)
..|...+..|++..|.+.+.++.+..+..+-.+..-++.-...|
T Consensus 64 ~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 64 SRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 34556666666666666666665443333333333344444433
No 479
>PRK12798 chemotaxis protein; Reviewed
Probab=52.76 E-value=2e+02 Score=27.02 Aligned_cols=164 Identities=12% Similarity=0.015 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHhhc-CCCChHHHHH--HHHHHhhcChhHHHHHHHHHHHhcccCc--h-hHHHH
Q 010276 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSI-DPSRPEVFVA--LSVLWERKDERGALSYAEKSIRIDERHI--P-GYIMK 356 (514)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~--l~~~~~~~~~~~A~~~~~~~~~~~~~~~--~-~~~~~ 356 (514)
.+.-..-|..-+-.|+-.++.+.+..+-.. .|.....+.. .+.++...+..+|+..|+.+--..|... + ++..-
T Consensus 112 ~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRs 191 (421)
T PRK12798 112 FDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRS 191 (421)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHh
Confidence 344444555555666666666555443221 1112222222 2333334566666666666655555531 1 12222
Q ss_pred HHHHHhcCChHHHHHHHHHhHhhcCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCC-HHHHHHHHHHHHhc
Q 010276 357 GNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKA-MPQS-AKALKLVGDVHASN 430 (514)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~-~~~~~~l~~~~~~~ 430 (514)
..+....|+.+++..+-.+.+...... ..+...+....+.++-. -...+..++.. +|.. ..+|..++..-...
T Consensus 192 i~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~ 270 (421)
T PRK12798 192 LFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI-RDARLVEILSFMDPERQRELYLRIARAALID 270 (421)
T ss_pred hHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc-cHHHHHHHHHhcCchhHHHHHHHHHHHHHHc
Confidence 223345566666555555555544332 11222223333322111 11223333433 2221 34455555555554
Q ss_pred CCChHHHHHHHHHHHhhC
Q 010276 431 ASGREKAKKFYESALRLE 448 (514)
Q Consensus 431 ~~~~~~A~~~~~~a~~~~ 448 (514)
|+.+-|...-++++.+.
T Consensus 271 -Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 271 -GKTELARFASERALKLA 287 (421)
T ss_pred -CcHHHHHHHHHHHHHhc
Confidence 66666666666665553
No 480
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=52.64 E-value=43 Score=28.47 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=11.2
Q ss_pred CChHHHHHHHHHHHhhCCC
Q 010276 432 SGREKAKKFYESALRLEPG 450 (514)
Q Consensus 432 ~~~~~A~~~~~~a~~~~~~ 450 (514)
++...|..++++|+.++|.
T Consensus 192 ~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 192 ETLQLALALLQRAFQLNDK 210 (230)
T ss_pred ccHHHHHHHHHHHHHhCCC
Confidence 4455666666666666654
No 481
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=52.35 E-value=2.5e+02 Score=27.88 Aligned_cols=279 Identities=11% Similarity=0.021 Sum_probs=0.0
Q ss_pred chhHHhHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHH---
Q 010276 212 SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE--- 288 (514)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--- 288 (514)
.......+..+..++.+|+.+++...+...+.... ......++.++.-.-.|..-.+-.-+..+....+. .
T Consensus 130 ~~~~~V~LE~al~ll~qG~ie~~~~~lt~~~~~~~--~~~~~pl~~~~~GL~~Y~~W~~~lpe~~q~~~~d~----~~~~ 203 (547)
T PF14929_consen 130 EEKLAVSLEHALFLLSQGNIEEAAYQLTIYLEQSR--QFDWEPLINAYHGLISYRLWYSKLPEEMQLEDFDR----YGSK 203 (547)
T ss_pred hhhhHHHHHHHHHHHhCCchHHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHHhccHHHhhccccch----hhhc
Q ss_pred ---------------HHHHHHHhCChhHHHHHHHHHhhcCCCC-----------hHHHHHHHHHHhh-cChhHHHHHHHH
Q 010276 289 ---------------YAMLLKVKCDYSKLSKLVHDLLSIDPSR-----------PEVFVALSVLWER-KDERGALSYAEK 341 (514)
Q Consensus 289 ---------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~-~~~~~A~~~~~~ 341 (514)
...+-...-...-....-...+-..|.- .+..........- +..+++......
T Consensus 204 m~~~~~~~~v~~~~~~~s~~~d~~~~s~~~s~se~sI~~~~gv~~~~~~~~d~~id~~lk~~~~~~f~~~qee~~~~~s~ 283 (547)
T PF14929_consen 204 MSSTSFSNTVGQSERYNSMSSDMVSSSWQASDSESSIMNIPGVNTLQMRNIDVKIDEFLKSVEMLEFYQPQEEYRESLSN 283 (547)
T ss_pred ccccccccccccccchhhHHHHhhhhhhhccccHHHHhcCcCcccccccccccccchHhhhhhcccCCCcHHHHHHHHhh
Q ss_pred HHHhcccCchhHHHHHHHHHhcCChHHHHHHHHHhHhhcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 010276 342 SIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALK 421 (514)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 421 (514)
.-...|.++..... .-|..|.++++.++...|.- ++..-|+.++|+..+++.....+. .-...
T Consensus 284 ~~ek~~s~p~~~~f--------n~yk~a~KYLR~al~s~p~v--------lLl~~~~l~eal~~~e~~c~~~~~-~lpi~ 346 (547)
T PF14929_consen 284 YAEKFPSNPGRSIF--------NAYKYAVKYLRLALQSNPPV--------LLLIGGRLKEALNELEKFCISSTC-ALPIR 346 (547)
T ss_pred ccccccCccccchh--------HHHHHHHHHHHHHhcCCCCe--------EEeccccHHHHHHHHHHhccCCCc-cchHH
Q ss_pred HHHHHHHhcCC--ChHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHH-h
Q 010276 422 LVGDVHASNAS--GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAA-T 498 (514)
Q Consensus 422 ~l~~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 498 (514)
..+.++... + ....=..+|+..++.+|........+...+...-...+=++...--+...|+.++|..++.++.+ .
T Consensus 347 ~~~~lle~~-d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~~~~~~~Lle~i~~~l~~~~s~~iwle~~~~~l~~~ 425 (547)
T PF14929_consen 347 LRAHLLEYF-DQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQKDYSAEQLLEMIALHLDLVPSHPIWLEFVSCFLKNP 425 (547)
T ss_pred HHHHHHHHh-CcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhcc
Q ss_pred ccHHHHHHHHHHHhcC
Q 010276 499 NMLQEALSHYEAALRL 514 (514)
Q Consensus 499 g~~~~A~~~~~~al~l 514 (514)
++++.-.+..+.++++
T Consensus 426 ~~~~~~~e~~~~~l~v 441 (547)
T PF14929_consen 426 SRFEDKEEDHKSALKV 441 (547)
T ss_pred ccccccHHHHHHHHhc
No 482
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=52.20 E-value=42 Score=24.57 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhh
Q 010276 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (514)
Q Consensus 40 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 72 (514)
..+.......|-..+..||+..|.+...++-+.
T Consensus 56 ~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 56 RRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 344667788899999999999999999999665
No 483
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=51.99 E-value=87 Score=31.69 Aligned_cols=131 Identities=13% Similarity=0.109 Sum_probs=74.1
Q ss_pred hcCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH---------hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 010276 228 SNDYKGGLELFAELLQR-FPNNIHILLEMAKVDAI---------IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (514)
Q Consensus 228 ~~~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (514)
.|+-++|+...-.+++. .|-.++.+..-|++|-. .+..+.|+++|+++.+..|... +-.+++.++...|
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAG 334 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhh
Confidence 37888888888877764 44456777777777654 3556789999999999988653 2234444444444
Q ss_pred C-hhHHHHHHHHHhhc------CCC--ChHHHHHHHHHH----hhcChhHHHHHHHHHHHhcccCchhHHHHHHH
Q 010276 298 D-YSKLSKLVHDLLSI------DPS--RPEVFVALSVLW----ERKDERGALSYAEKSIRIDERHIPGYIMKGNL 359 (514)
Q Consensus 298 ~-~~~A~~~~~~~~~~------~~~--~~~~~~~l~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 359 (514)
+ ++...++-.-.+.+ ... ....+...|..+ ..+++.+|+..-+.+.++.|.....-..+..+
T Consensus 335 ~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~meni 409 (1226)
T KOG4279|consen 335 EHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMENI 409 (1226)
T ss_pred hhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHHH
Confidence 3 23332221111111 110 111122223222 22888888888888888776644433333333
No 484
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.29 E-value=1.9e+02 Score=26.27 Aligned_cols=155 Identities=10% Similarity=-0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcccCchhHHH---HHHHHHhcCChHHHHHHHHHhHhhcCChH---------------------------
Q 010276 335 ALSYAEKSIRIDERHIPGYIM---KGNLLLSMKRPEAAVIAFRGAQELRPDLR--------------------------- 384 (514)
Q Consensus 335 A~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------------------- 384 (514)
+...|++..+.-|+.....+. .|.++...++|.+....+..+-.......
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g 119 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGG 119 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCc
Q ss_pred -------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC------
Q 010276 385 -------SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY------ 451 (514)
Q Consensus 385 -------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~------ 451 (514)
..+.+|.-|...++++.|.-.++++. ..-+.|.+.+.+.++.....
T Consensus 120 ~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan---------------------~rQ~~AKe~~~~ei~ka~~e~ds~k~ 178 (449)
T COG3014 120 NIYEGVLINYYKALNYMLLNDSAKARVEFNRAN---------------------ERQRRAKEFYYEEVQKAIKEIDSSKH 178 (449)
T ss_pred hhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHhccC
Q ss_pred ---------------hHHHHHHHHHHHHcCChhHHHHHHHHHHhhCCCchHHHHHHHHHHHhccHHHHHHHHHH
Q 010276 452 ---------------LGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEA 510 (514)
Q Consensus 452 ---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 510 (514)
...+.++...|....++-.+...|..++-..|+....-..+.+-...|-..+=...+++
T Consensus 179 ~~N~~~~~ae~s~~i~n~Y~ny~~~yea~~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~~q 252 (449)
T COG3014 179 NINMERSRAEVSEILNNTYSNYLDKYEAYQGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPFVAQ 252 (449)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHHHHH
No 485
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=51.10 E-value=52 Score=33.25 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCChH
Q 010276 397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG 453 (514)
Q Consensus 397 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 453 (514)
|++..++.-..-++...|....++...+.+|... +.++-|.+...-.....|.++.
T Consensus 107 ~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al-~k~d~a~rdl~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 107 GEYPKAIPECELALESQPRISKALLKRARKYEAL-NKLDLAVRDLRIVEKMDPSNVS 162 (748)
T ss_pred cchhhhcCchhhhhhccchHHHHHhhhhhHHHHH-HHHHHHHHHHHHHhcCCCCcch
Confidence 4555555555555555555555555555555554 4455555554444444555433
No 486
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=50.55 E-value=76 Score=21.38 Aligned_cols=26 Identities=4% Similarity=0.089 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 010276 218 RYVEAQCCIASNDYKGGLELFAELLQ 243 (514)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~ 243 (514)
+...|.-+-..|++.+|+.+|+++++
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34456667777777777777666543
No 487
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=50.20 E-value=40 Score=18.05 Aligned_cols=11 Identities=36% Similarity=0.431 Sum_probs=4.6
Q ss_pred hhHHHHHHHHH
Q 010276 332 ERGALSYAEKS 342 (514)
Q Consensus 332 ~~~A~~~~~~~ 342 (514)
..+|..+++++
T Consensus 21 ~~~A~~~~~~A 31 (36)
T smart00671 21 LEKALEYYKKA 31 (36)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 488
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=49.84 E-value=36 Score=22.89 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=6.9
Q ss_pred CChHHHHHHHHHHH
Q 010276 432 SGREKAKKFYESAL 445 (514)
Q Consensus 432 ~~~~~A~~~~~~a~ 445 (514)
|++++|+.+|.+++
T Consensus 22 g~~~eAl~~Y~~a~ 35 (77)
T smart00745 22 GDYEEALELYKKAI 35 (77)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555544443
No 489
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=49.84 E-value=2.9e+02 Score=30.86 Aligned_cols=81 Identities=17% Similarity=0.148 Sum_probs=58.5
Q ss_pred CChHHHHHHHHHHHhh----CCCC--hHHHHHHHHHHHHcC--------------------ChhHHHHHHHHHHhhCCC-
Q 010276 432 SGREKAKKFYESALRL----EPGY--LGAALALAELHVIEG--------------------RNGDAVSLLERYLKDWAD- 484 (514)
Q Consensus 432 ~~~~~A~~~~~~a~~~----~~~~--~~~~~~la~~~~~~g--------------------~~~~A~~~~~~~~~~~~~- 484 (514)
..+++++.+|.++... .|.. .++...++.++.... ...++...+.+++.....
T Consensus 359 ~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~ 438 (1185)
T PF08626_consen 359 DLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD 438 (1185)
T ss_pred HHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh
Confidence 4568899999988633 2322 346677777777777 777888888888776543
Q ss_pred ----c--hHHHHHHHHHHHhccHHHHHHHHHHHh
Q 010276 485 ----D--SLHVKLAQVFAATNMLQEALSHYEAAL 512 (514)
Q Consensus 485 ----~--~~~~~l~~~~~~~g~~~~A~~~~~~al 512 (514)
+ .++..+|.+|...|-..++.=+.+.++
T Consensus 439 l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~ 472 (1185)
T PF08626_consen 439 LSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELA 472 (1185)
T ss_pred CCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 2 488899999999998877766666554
No 490
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=49.57 E-value=1.4e+02 Score=24.33 Aligned_cols=66 Identities=17% Similarity=0.120 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhCCCcH--------HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 010276 231 YKGGLELFAELLQRFPNNI--------HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (514)
Q Consensus 231 ~~~A~~~~~~~~~~~p~~~--------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (514)
.+.|+.+++.+-+..|... -+......++.+.|.+++|.+.+++... +|++......+..+-...+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccc
Confidence 4567777777666544321 1222335567888999999999988888 7776655555555544433
No 491
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.36 E-value=3.1e+02 Score=28.19 Aligned_cols=324 Identities=10% Similarity=-0.005 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhHHHhHHHHHHHhhccCCCCChhhhHHHHHHHHhhHhhhhhHHHHHHHHHHHHhhcccCchhhhhhhh
Q 010276 6 EQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSR 85 (514)
Q Consensus 6 ~~~~~l~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 85 (514)
+.++=+++.+.|++|..++.......+...... .....-+-+...|+|++|-...-+.+.. +...|..-..
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~k------v~~~yI~HLl~~~~y~~Aas~~p~m~gn---~~~eWe~~V~ 431 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNEERFVIKK------VGKTYIDHLLFEGKYDEAASLCPKMLGN---NAAEWELWVF 431 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCccccchHH------HHHHHHHHHHhcchHHHHHhhhHHHhcc---hHHHHHHHHH
Q ss_pred hhhhccccCCCCcccccccCChhHHHHHHHHHHHhcCCHHHHHHHHhcCCC------------------CCccHHHHHHH
Q 010276 86 SSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPS------------------KARNLQMSLLM 147 (514)
Q Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------------------~~~~~~~~~~l 147 (514)
.....++...-....-...+.-....+.+....+-..+...=.+.....+. ...+....-.|
T Consensus 432 ~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~L 511 (846)
T KOG2066|consen 432 KFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLASDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVL 511 (846)
T ss_pred HhccccccchhhccCCCCCcccCchHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHH
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCHHHHHHHHHhccCcccHhHHHhccCCcCCCCCCCcCCchhHHhHHHHHHHHHH
Q 010276 148 AKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIA 227 (514)
Q Consensus 148 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (514)
+..|...++|.+|+..|-++....--+......| ..................+ +..+..
T Consensus 512 a~LYl~d~~Y~~Al~~ylklk~~~vf~lI~k~nL------~d~i~~~Iv~Lmll~skka---------------~~lLld 570 (846)
T KOG2066|consen 512 AHLYLYDNKYEKALPIYLKLQDKDVFDLIKKHNL------FDQIKDQIVLLMLLDSKKA---------------IDLLLD 570 (846)
T ss_pred HHHHHHccChHHHHHHHHhccChHHHHHHHHHhh------HHHHHHHHHHHHccchhhH---------------HHHHhh
Q ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCChhHHHHHHH
Q 010276 228 SNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVH 307 (514)
Q Consensus 228 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 307 (514)
..+.-.-..++++.. ++|..++..-.-+..... ...-++-.+.+++......-...=-.--.+.-+.++|.+++.
T Consensus 571 n~d~ip~a~Vveql~----~~P~~l~~YL~kl~~rd~-~~~~~y~dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~ 645 (846)
T KOG2066|consen 571 NRDSISPSEVVEQLE----DNPKLLYCYLHKLFKRDH-FMGSEYHDKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICS 645 (846)
T ss_pred ccccCCHHHHHHHHh----cChHHHHHHHHHHhhcCc-cccchhhhHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHH
Q ss_pred HHhhcCCCChHHHHHHHHHHhh--------cChhHHHHHHHHHHHhcccCchhHHHHHHHHHhcCChHHHH
Q 010276 308 DLLSIDPSRPEVFVALSVLWER--------KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV 370 (514)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 370 (514)
-....+.....+-.+|+.... ++.++|+++...- ++++.|..+.......-.+-.++
T Consensus 646 -q~~~~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq-----~D~eLWe~LI~~~ldkPe~~~~l 710 (846)
T KOG2066|consen 646 -QKNFYEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQ-----DDSELWEDLINYSLDKPEFIKAL 710 (846)
T ss_pred -hhCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhc-----CCHHHHHHHHHHhhcCcHHHHHH
No 492
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.00 E-value=69 Score=20.51 Aligned_cols=26 Identities=27% Similarity=0.204 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010276 386 YQGLVHSYLQFSKVKEALYAAREAMK 411 (514)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (514)
.......+...|++++|.+++.+...
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445555666666666666655543
No 493
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=48.44 E-value=1.2e+02 Score=30.83 Aligned_cols=95 Identities=16% Similarity=0.173 Sum_probs=57.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHh--CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 010276 222 AQCCIASNDYKGGLELFAELLQRFPNN----IHILLEMAKVDAII--GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV 295 (514)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (514)
+...++.+++..+.--|...+..-|.+ .......+.+++.. |++..++.-..-++...|....++...+.+|..
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a 139 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA 139 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH
Confidence 555666666666655566555555522 33344445554443 566666666666677777766666666667766
Q ss_pred hCChhHHHHHHHHHhhcCCCC
Q 010276 296 KCDYSKLSKLVHDLLSIDPSR 316 (514)
Q Consensus 296 ~~~~~~A~~~~~~~~~~~~~~ 316 (514)
.+.++-|.+.+.-.....|.+
T Consensus 140 l~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 140 LNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred HHHHHHHHHHHHHHhcCCCCc
Confidence 666666666655555555655
No 494
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=48.26 E-value=2.5e+02 Score=27.67 Aligned_cols=25 Identities=12% Similarity=-0.047 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHH
Q 010276 454 AALALAELHVIEGRNGDAVSLLERY 478 (514)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~~ 478 (514)
.|..+|-.+++.+++.+|+..+-.+
T Consensus 320 PYty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 320 PYTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cceehhhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 495
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=48.07 E-value=1.6e+02 Score=28.88 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHh-----cccCchhHHHHHHHHHhcCChHHHHHHHHHhHhh
Q 010276 333 RGALSYAEKSIRI-----DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL 379 (514)
Q Consensus 333 ~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 379 (514)
..++.+|.+++.. +..+...|..+|..+++.+++.+|+..+-.+-..
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADV 347 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666543 2234566778888889999999998888777543
No 496
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=48.00 E-value=1.7e+02 Score=28.76 Aligned_cols=65 Identities=8% Similarity=-0.034 Sum_probs=45.5
Q ss_pred HHhcCCHHHHHHHHhcCCCCCccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCHHHHHHHHHh
Q 010276 118 HFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCP-FFIEAITALAEL 184 (514)
Q Consensus 118 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~ 184 (514)
++...+|.-|....++.. -+...+|...|..+.+.+++..|..-|+++++... +-+.+...+.++
T Consensus 566 Lie~ErYqlaV~mckKc~--iD~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ 631 (1141)
T KOG1811|consen 566 LIEAERYQLAVEMCKKCG--IDTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINL 631 (1141)
T ss_pred HHHHHHHHHHHHHHhhcC--CCcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHh
Confidence 344555666666666542 24566899999999999999999999999998753 334444444433
No 497
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=47.77 E-value=1.5e+02 Score=24.16 Aligned_cols=41 Identities=15% Similarity=0.046 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 010276 388 GLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS 429 (514)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 429 (514)
....++.+.|.+++|.+.+++... +|++......+..+-..
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHc
Confidence 335566777777777777777776 66655554445444443
No 498
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.44 E-value=58 Score=24.77 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=34.6
Q ss_pred CCCChhhhHHHHH----HHHhhHhhhhhHHHHHHHHHHHHhhcccCchh
Q 010276 35 GETSPHLKAENLI----ILGDSLFRDREYRRAIHTYKQALQYYKIVPKQ 79 (514)
Q Consensus 35 ~~~~~~~~~~~~~----~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 79 (514)
++.+.+...+.+| .+|+.++.+|+++++...+-.|+..+|.....
T Consensus 69 pd~~d~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqL 117 (143)
T KOG4056|consen 69 PDPSDAEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQPAQL 117 (143)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHH
Confidence 3334455555554 58999999999999999999999998865443
No 499
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.16 E-value=2.2e+02 Score=25.70 Aligned_cols=94 Identities=11% Similarity=0.085 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC------cHHHHHHHHHHHHHhCChHHHHHHHHHHH--hhCCCCHHHHH
Q 010276 217 HRYVEAQCCIASNDYKGGLELFAELLQRF-PN------NIHILLEMAKVDAIIGKNDEAILNFEKVR--SIDPYIMTYMD 287 (514)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~ 287 (514)
....+|.+|-..++|..|.+.+.-+-... |. ....+..+|+.|...++..+|..+..++- ..+..|.....
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqi 184 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQI 184 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHH
Confidence 34567888888888888887776542211 11 13456677888888888888887777652 22334444333
Q ss_pred ----HHHHHHHHhCChhHHHHHHHHHh
Q 010276 288 ----EYAMLLKVKCDYSKLSKLVHDLL 310 (514)
Q Consensus 288 ----~l~~~~~~~~~~~~A~~~~~~~~ 310 (514)
..++++-..+++-+|...|-++.
T Consensus 185 e~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 185 EYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666665555443
No 500
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=45.98 E-value=3e+02 Score=26.94 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCCC--CccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 010276 109 EVKYKIASCHFALGETKAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCP 172 (514)
Q Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 172 (514)
+.....+++.....++..|...+.++... +.+....+..+++-...++ ..++...+.-+..+|
T Consensus 100 ~~~LL~ael~la~~q~~~Al~~L~~~~~~~ls~~Qq~Ry~q~~a~a~ea~-~~~~~a~rari~~~~ 164 (604)
T COG3107 100 EKSLLAAELALAQKQPAAALQQLAKLLPADLSQNQQARYYQARADALEAR-GDSIDAARARIAQDP 164 (604)
T ss_pred HHHHHHHHHHHhccChHHHHHHHhhcchhhcCHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHhhh
Confidence 34456678888899999999999986433 4554555555444443333 123344444444444
Done!